Citrus Sinensis ID: 042287

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------
Protein Sequence
TLTLDSCCLPQFGRERVSQQQQQQQRPTRLLKRSAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Secondary Structure (PSIPRED)
cEEEcccccccccHHHHHHHHHHcccHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHccccEEEcEEccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHcccHHHcHHHHccccccEEEEEEccccEcccHHHccccccccccccHHHccccccccHHHHHHHHcEEEEEEcccccccccccccc
Coil and Loop (DISEMBL)
tltldscclpqfgrerVSQQQQQQQRPTRLLKRSAMGKVHGslaragkvrgqtpkvakqdkkkkprgrahkrmqyNRRFVTAVVGfgkkrgpnssek
Flexible Loop (DISEMBL)
tltldscclpqfgrervsqqqqqqqrptrllkrsaMGKVHgslaragkvrgqtpkvakqdkkkkprgrahkrmqynrrfvtavvgfgkkrgpnssek
Low Complexity Region (SEG)
TLTLDSCCLPQFGRERVSqqqqqqqRPTRLLKRSAMGKVHGSLARAGKVRGQTPkvakqdkkkkPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Disordered region (IsUnstruct)
***************************************************************************NRRFVTAVVGF***********
Disordered Region (DISOPRED)
TLTLDSCCLPQFGRERVSQQQQQQQRPTRLLKRSAMGKVHGSLARAGK***********************RMQYNRRFVTAV**************
Disordered Region (DISEMBL)
TLTLDSCCLPQFG*****************LKRSAMGKVHGSLARA*************************RMQYNRRFVTAVVGFGK*********
Disordered Region (DISPRO)
TLTLDSCCLPQFGRERVSQQQQQQQRPTRLLKRSAMGKVHGSLARAGKVRGQTPKVA*********GRAHKRMQYNRRFVTAVVGF***********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
TLTLDSCCLPQFGRERVSQQQQQQQRPTRLLKRSAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	97	2.2.26 [Sep-21-2011]
P49689	62	40S ribosomal protein S30	yes	no	0.639	1.0	0.967	1e-21
O42952	61	40S ribosomal protein S30	yes	no	0.618	0.983	0.65	3e-13
P62864	59	40S ribosomal protein S30	no	no	0.608	1.0	0.779	3e-13
P0C2F0	59	40S ribosomal protein S30	no	no	0.608	1.0	0.779	3e-13
P62863	59	40S ribosomal protein S30	no	no	0.608	1.0	0.779	3e-13
P62867	59	40S ribosomal protein S30	N/A	no	0.608	1.0	0.779	3e-13
P62862	59	40S ribosomal protein S30	no	no	0.608	1.0	0.779	3e-13
P62861	59	40S ribosomal protein S30	no	no	0.608	1.0	0.779	3e-13
P62860	59	40S ribosomal protein S30	no	no	0.608	1.0	0.779	3e-13
P62866	59	40S ribosomal protein S30	no	no	0.608	1.0	0.779	3e-13

>sp|P49689|RS30_ARATH 40S ribosomal protein S30 OS=Arabidopsis thaliana GN=RPS30A PE=1 SV=3

 Score =  101 bits (251), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/62 (96%), Positives = 62/62 (100%)

Query: 36 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 95
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60

Query: 96 EK 97
          EK
Sbjct: 61 EK 62

Arabidopsis thaliana (taxid: 3702)

>sp|O42952|RS30_SCHPO 40S ribosomal protein S30 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rps30a PE=3 SV=2

 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/60 (65%), Positives = 45/60 (75%)

Query: 36 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 95
          MGKVHGSLARAGKV+ QTPKV KQ+K K+P+GRA+KR+ Y RRFV      G KR  N S
Sbjct: 1  MGKVHGSLARAGKVKSQTPKVEKQEKPKQPKGRAYKRLLYVRRFVNVTNMVGGKRRMNPS 60

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P62864|RS30_RAT 40S ribosomal protein S30 OS=Rattus norvegicus GN=Fau PE=1 SV=1

 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/59 (77%), Positives = 51/59 (86%)

Query: 38 KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSE 96
          KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++ 
Sbjct: 1  KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS 59

Rattus norvegicus (taxid: 10116)

>sp|P0C2F0|RS30_PONAB 40S ribosomal protein S30 OS=Pongo abelii GN=FAU PE=3 SV=1

 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/59 (77%), Positives = 51/59 (86%)

Query: 38 KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSE 96
          KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++ 
Sbjct: 1  KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS 59

Pongo abelii (taxid: 9601)

>sp|P62863|RS30_PIG 40S ribosomal protein S30 OS=Sus scrofa GN=FAU PE=2 SV=1

 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/59 (77%), Positives = 51/59 (86%)

Query: 38 KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSE 96
          KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++ 
Sbjct: 1  KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS 59

Sus scrofa (taxid: 9823)

>sp|P62867|RS30_MUSSI 40S ribosomal protein S30 OS=Mus spicilegus GN=Fau PE=3 SV=1

 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/59 (77%), Positives = 51/59 (86%)

Query: 38 KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSE 96
          KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++ 
Sbjct: 1  KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS 59

Mus spicilegus (taxid: 10103)

>sp|P62862|RS30_MOUSE 40S ribosomal protein S30 OS=Mus musculus GN=Fau PE=3 SV=1

 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/59 (77%), Positives = 51/59 (86%)

Query: 38 KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSE 96
          KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++ 
Sbjct: 1  KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS 59

Mus musculus (taxid: 10090)

>sp|P62861|RS30_HUMAN 40S ribosomal protein S30 OS=Homo sapiens GN=FAU PE=1 SV=1

 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/59 (77%), Positives = 51/59 (86%)

Query: 38 KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSE 96
          KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++ 
Sbjct: 1  KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS 59

Homo sapiens (taxid: 9606)

>sp|P62860|RS30_CRIGR 40S ribosomal protein S30 OS=Cricetulus griseus GN=FAU PE=3 SV=1

 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/59 (77%), Positives = 51/59 (86%)

Query: 38 KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSE 96
          KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++ 
Sbjct: 1  KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS 59

Cricetulus griseus (taxid: 10029)

>sp|P62866|RS30_BOVIN 40S ribosomal protein S30 OS=Bos taurus GN=FAU PE=3 SV=1

 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/59 (77%), Positives = 51/59 (86%)

Query: 38 KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSE 96
          KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++ 
Sbjct: 1  KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS 59

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	97
115466684	62	Os06g0172600 [Oryza sativa Japonica Grou	0.639	1.0	1.0	6e-27
297721651	85	Os02g0804150 [Oryza sativa Japonica Grou	0.639	0.729	0.983	7e-27
222635048	174	hypothetical protein OsJ_20291 [Oryza sa	0.628	0.350	1.0	8e-27
357476845	62	40S ribosomal protein S30 [Medicago trun	0.639	1.0	0.983	1e-26
226509527	62	LOC100284182 [Zea mays] gi|226958587|ref	0.639	1.0	0.983	2e-26
449446564	76	PREDICTED: 40S ribosomal protein S30-lik	0.628	0.802	1.0	2e-26
357125116	62	PREDICTED: 40S ribosomal protein S30-lik	0.639	1.0	0.967	4e-26
168007494	61	predicted protein [Physcomitrella patens	0.628	1.0	0.983	8e-26
218191764	73	hypothetical protein OsI_09334 [Oryza sa	0.618	0.821	1.0	9e-26
222623869	73	hypothetical protein OsJ_08768 [Oryza sa	0.618	0.821	1.0	1e-25

>gi|115466684|ref|NP_001056941.1| Os06g0172600 [Oryza sativa Japonica Group] gi|226499664|ref|NP_001149323.1| LOC100282946 [Zea mays] gi|224119458|ref|XP_002318077.1| predicted protein [Populus trichocarpa] gi|224131468|ref|XP_002321092.1| predicted protein [Populus trichocarpa] gi|224135953|ref|XP_002322202.1| predicted protein [Populus trichocarpa] gi|225442365|ref|XP_002281376.1| PREDICTED: 40S ribosomal protein S30-like [Vitis vinifera] gi|225445010|ref|XP_002283033.1| PREDICTED: 40S ribosomal protein S30-like [Vitis vinifera] gi|242066882|ref|XP_002454730.1| hypothetical protein SORBIDRAFT_04g036360 [Sorghum bicolor] gi|242092158|ref|XP_002436569.1| hypothetical protein SORBIDRAFT_10g004940 [Sorghum bicolor] gi|255546235|ref|XP_002514177.1| 40S ribosomal protein S30, putative [Ricinus communis] gi|255549688|ref|XP_002515895.1| 40S ribosomal protein S30, putative [Ricinus communis] gi|356497139|ref|XP_003517420.1| PREDICTED: 40S ribosomal protein S30 [Glycine max] gi|356514308|ref|XP_003525848.1| PREDICTED: 40S ribosomal protein S30-like [Glycine max] gi|356540686|ref|XP_003538817.1| PREDICTED: 40S ribosomal protein S30-like [Glycine max] gi|449435804|ref|XP_004135684.1| PREDICTED: 40S ribosomal protein S30-like [Cucumis sativus] gi|449446568|ref|XP_004141043.1| PREDICTED: 40S ribosomal protein S30-like isoform 3 [Cucumis sativus] gi|449488007|ref|XP_004157910.1| PREDICTED: 40S ribosomal protein S30-like isoform 2 [Cucumis sativus] gi|449489835|ref|XP_004158430.1| PREDICTED: 40S ribosomal protein S30-like [Cucumis sativus] gi|313103647|pdb|3IZ6|Z Chain Z, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome gi|47497376|dbj|BAD19414.1| 40S ribosomal protein S30-like [Oryza sativa Japonica Group] gi|51090595|dbj|BAD36047.1| 40S ribosomal protein S30-like [Oryza sativa Japonica Group] gi|55773694|dbj|BAD72277.1| 40S ribosomal protein S30-like [Oryza sativa Japonica Group] gi|113594981|dbj|BAF18855.1| Os06g0172600 [Oryza sativa Japonica Group] gi|118482205|gb|ABK93031.1| unknown [Populus trichocarpa] gi|118483097|gb|ABK93458.1| unknown [Populus trichocarpa] gi|118483320|gb|ABK93562.1| unknown [Populus trichocarpa] gi|118484154|gb|ABK93960.1| unknown [Populus trichocarpa] gi|118484319|gb|ABK94037.1| unknown [Populus trichocarpa] gi|118487828|gb|ABK95737.1| unknown [Populus trichocarpa] gi|195607768|gb|ACG25714.1| 40S ribosomal protein S30 [Zea mays] gi|195610010|gb|ACG26835.1| 40S ribosomal protein S30 [Zea mays] gi|195616154|gb|ACG29907.1| 40S ribosomal protein S30 [Zea mays] gi|195617990|gb|ACG30825.1| 40S ribosomal protein S30 [Zea mays] gi|195618464|gb|ACG31062.1| 40S ribosomal protein S30 [Zea mays] gi|195619280|gb|ACG31470.1| 40S ribosomal protein S30 [Zea mays] gi|195626382|gb|ACG35021.1| 40S ribosomal protein S30 [Zea mays] gi|195639864|gb|ACG39400.1| 40S ribosomal protein S30 [Zea mays] gi|222858750|gb|EEE96297.1| predicted protein [Populus trichocarpa] gi|222861865|gb|EEE99407.1| predicted protein [Populus trichocarpa] gi|222869198|gb|EEF06329.1| predicted protein [Populus trichocarpa] gi|223544800|gb|EEF46315.1| 40S ribosomal protein S30, putative [Ricinus communis] gi|223546633|gb|EEF48131.1| 40S ribosomal protein S30, putative [Ricinus communis] gi|241914792|gb|EER87936.1| hypothetical protein SORBIDRAFT_10g004940 [Sorghum bicolor] gi|241934561|gb|EES07706.1| hypothetical protein SORBIDRAFT_04g036360 [Sorghum bicolor] gi|255640004|gb|ACU20293.1| unknown [Glycine max] gi|388512567|gb|AFK44345.1| unknown [Lotus japonicus] gi|388520079|gb|AFK48101.1| unknown [Lotus japonicus] gi|413939361|gb|AFW73912.1| 40S ribosomal protein S30 [Zea mays] gi|413944459|gb|AFW77108.1| 40S ribosomal protein S30 [Zea mays]

 Score =  124 bits (312), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 62/62 (100%), Positives = 62/62 (100%)

Query: 36 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 95
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60

Query: 96 EK 97
          EK
Sbjct: 61 EK 62

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297721651|ref|NP_001173188.1| Os02g0804150 [Oryza sativa Japonica Group] gi|255671325|dbj|BAH91917.1| Os02g0804150, partial [Oryza sativa Japonica Group]

 Score =  124 bits (311), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 61/62 (98%), Positives = 61/62 (98%)

Query: 36 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 95
           GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 24 WGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 83

Query: 96 EK 97
          EK
Sbjct: 84 EK 85

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222635048|gb|EEE65180.1| hypothetical protein OsJ_20291 [Oryza sativa Japonica Group]

 Score =  124 bits (311), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 61/61 (100%), Positives = 61/61 (100%)

Query: 37  GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSE 96
           GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSE
Sbjct: 114 GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSE 173

Query: 97  K 97
           K
Sbjct: 174 K 174

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357476845|ref|XP_003608708.1| 40S ribosomal protein S30 [Medicago truncatula] gi|357482045|ref|XP_003611308.1| 40S ribosomal protein S30 [Medicago truncatula] gi|355509763|gb|AES90905.1| 40S ribosomal protein S30 [Medicago truncatula] gi|355512643|gb|AES94266.1| 40S ribosomal protein S30 [Medicago truncatula]

 Score =  123 bits (308), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 61/62 (98%), Positives = 62/62 (100%)

Query: 36 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 95
          MGKVHGSLARAGKVRGQTPKVAKQDKKK+PRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKQPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60

Query: 96 EK 97
          EK
Sbjct: 61 EK 62

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226509527|ref|NP_001150550.1| LOC100284182 [Zea mays] gi|226958587|ref|NP_001152931.1| 40S ribosomal protein S30 [Zea mays] gi|350537285|ref|NP_001232823.1| 40S ribosomal protein S30 [Zea mays] gi|195611292|gb|ACG27476.1| 40S ribosomal protein S30 [Zea mays] gi|195618628|gb|ACG31144.1| 40S ribosomal protein S30 [Zea mays] gi|195618890|gb|ACG31275.1| 40S ribosomal protein S30 [Zea mays] gi|195640126|gb|ACG39531.1| 40S ribosomal protein S30 [Zea mays] gi|195651375|gb|ACG45155.1| 40S ribosomal protein S30 [Zea mays] gi|195656311|gb|ACG47623.1| 40S ribosomal protein S30 [Zea mays] gi|413924173|gb|AFW64105.1| 40S ribosomal protein S30 [Zea mays] gi|413952980|gb|AFW85629.1| 40S ribosomal protein S30 [Zea mays]

 Score =  122 bits (307), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 61/62 (98%), Positives = 62/62 (100%)

Query: 36 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 95
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRA+KRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAYKRMQYNRRFVTAVVGFGKKRGPNSS 60

Query: 96 EK 97
          EK
Sbjct: 61 EK 62

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446564|ref|XP_004141041.1| PREDICTED: 40S ribosomal protein S30-like isoform 1 [Cucumis sativus] gi|449446566|ref|XP_004141042.1| PREDICTED: 40S ribosomal protein S30-like isoform 2 [Cucumis sativus] gi|449488005|ref|XP_004157909.1| PREDICTED: 40S ribosomal protein S30-like isoform 1 [Cucumis sativus]

 Score =  122 bits (307), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 61/61 (100%), Positives = 61/61 (100%)

Query: 37 GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSE 96
          GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSE
Sbjct: 16 GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSE 75

Query: 97 K 97
          K
Sbjct: 76 K 76

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357125116|ref|XP_003564241.1| PREDICTED: 40S ribosomal protein S30-like [Brachypodium distachyon] gi|357137539|ref|XP_003570358.1| PREDICTED: 40S ribosomal protein S30-like [Brachypodium distachyon] gi|326525289|dbj|BAK07914.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  121 bits (304), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 60/62 (96%), Positives = 62/62 (100%)

Query: 36 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 95
          MGKVHGSLARAGKVRGQTPKVAKQDKKK+PRGRAHKR+QYNRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKQPRGRAHKRIQYNRRFVTAVVGFGKKRGPNSS 60

Query: 96 EK 97
          EK
Sbjct: 61 EK 62

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168007494|ref|XP_001756443.1| predicted protein [Physcomitrella patens subsp. patens] gi|162692482|gb|EDQ78839.1| predicted protein [Physcomitrella patens subsp. patens]

 Score =  120 bits (302), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 60/61 (98%), Positives = 61/61 (100%)

Query: 37 GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSE 96
          GKVHGSLARAGKVRGQTPKVAKQDKKKKP+GRAHKRMQYNRRFVTAVVGFGKKRGPNSSE
Sbjct: 1  GKVHGSLARAGKVRGQTPKVAKQDKKKKPKGRAHKRMQYNRRFVTAVVGFGKKRGPNSSE 60

Query: 97 K 97
          K
Sbjct: 61 K 61

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218191764|gb|EEC74191.1| hypothetical protein OsI_09334 [Oryza sativa Indica Group]

 Score =  120 bits (301), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 60/60 (100%), Positives = 60/60 (100%)

Query: 38 KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK 97
          KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Sbjct: 14 KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK 73

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222623869|gb|EEE58001.1| hypothetical protein OsJ_08768 [Oryza sativa Japonica Group]

 Score =  120 bits (300), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 60/60 (100%), Positives = 60/60 (100%)

Query: 38 KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK 97
          KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Sbjct: 14 KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK 73

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	97
TAIR|locus:2051985	62	AT2G19750 [Arabidopsis thalian	0.639	1.0	0.806	5.5e-22
TAIR|locus:2118244	62	AT4G29390 [Arabidopsis thalian	0.639	1.0	0.806	5.5e-22
TAIR|locus:2164986	62	AT5G56670 [Arabidopsis thalian	0.639	1.0	0.806	5.5e-22
UNIPROTKB|H7BWV9	133	H7BWV9 "Uncharacterized protei	0.608	0.443	0.644	4.2e-15
UNIPROTKB|E2RC86	133	FAU "Uncharacterized protein"	0.608	0.443	0.644	4.2e-15
UNIPROTKB|E9PR30	98	FAU "40S ribosomal protein S30	0.608	0.602	0.644	4.2e-15
UNIPROTKB|F1RQU9	133	FAU "Ubiquitin-like protein FU	0.608	0.443	0.644	4.2e-15
FB|FBgn0038834	147	RpS30 "Ribosomal protein S30"	0.608	0.401	0.610	1.4e-14
ZFIN|ZDB-GENE-040426-1700	136	faua "Finkel-Biskis-Reilly mur	0.608	0.433	0.627	1.4e-14
UNIPROTKB|P62866	59	FAU "40S ribosomal protein S30	0.597	0.983	0.637	1.8e-14

TAIR|locus:2051985 AT2G19750 [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 50/62 (80%), Positives = 52/62 (83%)

Query:    36 MGKVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 95
             MGKVHGSLARAGKVRGQTP          PRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSS
Sbjct:     1 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60

Query:    96 EK 97
             EK
Sbjct:    61 EK 62

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

TAIR|locus:2118244 AT4G29390 [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 50/62 (80%), Positives = 52/62 (83%)

Query:    36 MGKVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 95
             MGKVHGSLARAGKVRGQTP          PRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSS
Sbjct:     1 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60

Query:    96 EK 97
             EK
Sbjct:    61 EK 62

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

GO:0001510 "RNA methylation" evidence=RCA

TAIR|locus:2164986 AT5G56670 [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 50/62 (80%), Positives = 52/62 (83%)

Query:    36 MGKVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 95
             MGKVHGSLARAGKVRGQTP          PRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSS
Sbjct:     1 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60

Query:    96 EK 97
             EK
Sbjct:    61 EK 62

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

GO:0001510 "RNA methylation" evidence=RCA

UNIPROTKB|H7BWV9 H7BWV9 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 38/59 (64%), Positives = 42/59 (71%)

Query:    37 GKVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 95
             GKVHGSLARAGKVRGQTP            GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct:    74 GKVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 132

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|E2RC86 FAU "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 38/59 (64%), Positives = 42/59 (71%)

Query:    37 GKVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 95
             GKVHGSLARAGKVRGQTP            GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct:    74 GKVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 132

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|E9PR30 FAU "40S ribosomal protein S30" [Homo sapiens (taxid:9606)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 38/59 (64%), Positives = 42/59 (71%)

Query:    37 GKVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 95
             GKVHGSLARAGKVRGQTP            GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct:    39 GKVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 97

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|F1RQU9 FAU "Ubiquitin-like protein FUBI" [Sus scrofa (taxid:9823)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 38/59 (64%), Positives = 42/59 (71%)

Query:    37 GKVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 95
             GKVHGSLARAGKVRGQTP            GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct:    74 GKVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 132

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

FB|FBgn0038834 RpS30 "Ribosomal protein S30" [Drosophila melanogaster (taxid:7227)]

 Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 36/59 (61%), Positives = 43/59 (72%)

Query:    37 GKVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 95
             GKVHGSLARAGKV+GQTP            GRA +R+QYNRRFV  V GFG++RGPN++
Sbjct:    87 GKVHGSLARAGKVKGQTPKVEKQEKKKKKTGRAKRRIQYNRRFVNFVQGFGRRRGPNAN 145

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0006412 "translation" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0000022 "mitotic spindle elongation" evidence=IMP

GO:0007052 "mitotic spindle organization" evidence=IMP

ZFIN|ZDB-GENE-040426-1700 faua "Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a" [Danio rerio (taxid:7955)]

 Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 37/59 (62%), Positives = 42/59 (71%)

Query:    37 GKVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 95
             GKVHGSLARAGKVRGQTP            GRA +R+QYNRRFV  V  FGKK+GPN++
Sbjct:    77 GKVHGSLARAGKVRGQTPKVDKQEKKKKKTGRAKRRIQYNRRFVNVVPTFGKKKGPNAN 135

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

UNIPROTKB|P62866 FAU "40S ribosomal protein S30" [Bos taurus (taxid:9913)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 37/58 (63%), Positives = 41/58 (70%)

Query:    38 KVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 95
             KVHGSLARAGKVRGQTP            GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct:     1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q556Y1	RS30_DICDI	No assigned EC number	0.6440	0.6082	0.8939	yes	no
P62867	RS30_MUSSI	No assigned EC number	0.7796	0.6082	1.0	N/A	no
P49689	RS30_ARATH	No assigned EC number	0.9677	0.6391	1.0	yes	no
O42952	RS30_SCHPO	No assigned EC number	0.65	0.6185	0.9836	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	97
pfam04758	53	pfam04758, Ribosomal_S30, Ribosomal protein S30	2e-20
PTZ00467	66	PTZ00467, PTZ00467, 40S ribosomal protein S30; Pro	4e-11
PRK09336	50	PRK09336, PRK09336, 30S ribosomal protein S30e; Pr	2e-04

>gnl|CDD|218248 pfam04758, Ribosomal_S30, Ribosomal protein S30

 Score = 76.3 bits (188), Expect = 2e-20
 Identities = 44/53 (83%), Positives = 46/53 (86%)

Query: 38 KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKR 90
          KVHGSLARAGKVR QTPKV KQ+KKKKP GRA KR+QYNRRFV  V GFGKKR
Sbjct: 1  KVHGSLARAGKVRNQTPKVEKQEKKKKPTGRAKKRLQYNRRFVNVVPGFGKKR 53

Length = 53

>gnl|CDD|185646 PTZ00467, PTZ00467, 40S ribosomal protein S30; Provisional

 Score = 53.2 bits (127), Expect = 4e-11
 Identities = 37/54 (68%), Positives = 45/54 (83%)

Query: 36 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKK 89
          MGK+HGSLARAGKV+ QTPKVAKQ+K K+PRGRA KR++Y RRF+   V  G+K
Sbjct: 1  MGKIHGSLARAGKVKNQTPKVAKQEKPKQPRGRALKRLKYTRRFLAKTVKPGEK 54

Length = 66

>gnl|CDD|181786 PRK09336, PRK09336, 30S ribosomal protein S30e; Provisional

 Score = 35.5 bits (82), Expect = 2e-04
 Identities = 21/43 (48%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 40 HGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTA 82
          HGSL +AGKVR QTPK+  + KK +   R   R +Y RR + A
Sbjct: 4  HGSLTKAGKVRSQTPKIPPKPKKNEVP-RVRNRREYERRVLKA 45

Length = 50

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	97
KOG0009	62	consensus Ubiquitin-like/40S ribosomal S30 protein	100.0
PF04758	59	Ribosomal_S30: Ribosomal protein S30; InterPro: IP	99.97
PTZ00467	66	40S ribosomal protein S30; Provisional	99.97
PRK09336	50	30S ribosomal protein S30e; Provisional	99.9
COG4919	54	Ribosomal protein S30 [Translation, ribosomal stru	99.54

>KOG0009 consensus Ubiquitin-like/40S ribosomal S30 protein fusion [Translation, ribosomal structure and biogenesis; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.9e-36  Score=196.89  Aligned_cols=62  Identities=79%  Similarity=1.188  Sum_probs=60.8

Q ss_pred             ccchhhhhhccCcccCCCccccccccccCCChhhhhhhhcccceeeceecCCccCCCCCCCC
Q 042287           36 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK   97 (97)
Q Consensus        36 ~GKvHGSLarAGKVR~QTPKV~kqeKkK~~~gRak~R~qYnrRfvnv~~~~g~krgpN~~~~   97 (97)
                      |||||||||+|||||+|||||++|||+|+++|||++|+||||||||++.+||+|++||+||.
T Consensus         1 ~gkvhgslarAGKVr~QTPKv~kqeK~kkk~GRa~~Rlqy~rR~vn~~~~~g~Kr~~N~~s~   62 (62)
T KOG0009|consen    1 MGKVHGSLARAGKVRGQTPKVEKQEKKKKKRGRAKKRLQYNRRFVNVVFGVGGKRGPNPNSK   62 (62)
T ss_pred             CCceeeehhhcccccccCCcchhhhhcccccchHHHHhhhheeeEEeeeccccccCCCCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999984

>PF04758 Ribosomal_S30: Ribosomal protein S30; InterPro: IPR006846 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.97  E-value=6.2e-34  Score=184.68  Aligned_cols=59  Identities=78%  Similarity=1.187  Sum_probs=54.0

Q ss_pred             chhhhhhccCcccCCCccccccccccCCChhhhhhhhcccceeeceecCCccCCCCCCC
Q 042287           38 KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSE   96 (97)
Q Consensus        38 KvHGSLarAGKVR~QTPKV~kqeKkK~~~gRak~R~qYnrRfvnv~~~~g~krgpN~~~   96 (97)
                      |||||||+|||||+||||||++||+|.++|||++|++||+||++++++||+|++||+||
T Consensus         1 KvHGSLarAGKVR~QTPKV~k~~k~k~~~gRak~R~~Y~rRfv~~~~~~g~k~~~N~~s   59 (59)
T PF04758_consen    1 KVHGSLARAGKVRGQTPKVEKQEKKKKPTGRAKKRIQYNRRFVNVVPTFGKKKGPNANS   59 (59)
T ss_dssp             HHCCCCTTTTHHHHHSSSSS--HHHHHHHCHHHHHHHHHHHCSTTHHHSCTTTTTTS--
T ss_pred             CcccchhhcccccccCCCcCccccccCCchhHHHHHhhhhheeeecccCCCccCCCCCC
Confidence            79999999999999999999999998999999999999999999999999999999986

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry is for the ribosomal protein S30.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XZN_X 2XZM_X 3IZB_Z 3U5G_e 3U5C_e 3J16_E 3IZ6_Z.

>PTZ00467 40S ribosomal protein S30; Provisional

Probab=99.97  E-value=1.7e-32  Score=181.42  Aligned_cols=61  Identities=62%  Similarity=0.927  Sum_probs=57.5

Q ss_pred             ccchhhhhhccCcccCCCccccccccccCCChhhhhhhhcccceeeceecCCccCCCCCCC
Q 042287           36 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSE   96 (97)
Q Consensus        36 ~GKvHGSLarAGKVR~QTPKV~kqeKkK~~~gRak~R~qYnrRfvnv~~~~g~krgpN~~~   96 (97)
                      |||||||||+||||++|||||+++||+|.++|||++|+||||||+|++.+||+|+..|+++
T Consensus         1 mgKvHGSLarAGKVr~QTPkv~k~eKkk~~~gRA~~R~qYnrRfv~~~~~~g~kr~~~~~~   61 (66)
T PTZ00467          1 MGKIHGSLARAGKVKNQTPKVAKQEKPKQPRGRALKRLKYTRRFLAKTVKPGEKVHMNKQP   61 (66)
T ss_pred             CcchhhhhhhcccccCCCCCchhhhcccCCCchHHHHHHHHhhhhhccccCCcccccCCCC
Confidence            8999999999999999999999999999999999999999999999999999887666654

>PRK09336 30S ribosomal protein S30e; Provisional

Probab=99.90  E-value=1.8e-25  Score=141.38  Aligned_cols=45  Identities=47%  Similarity=0.699  Sum_probs=41.8

Q ss_pred             hhhhhhccCcccCCCccccccccccCCChhhhhhhhcccceeecee
Q 042287           39 VHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVV   84 (97)
Q Consensus        39 vHGSLarAGKVR~QTPKV~kqeKkK~~~gRak~R~qYnrRfvnv~~   84 (97)
                      +|||||+|||||+|||||+++||+ +++|||++|++|||||+|+..
T Consensus         3 ~HGSLarAGKVr~qTPkv~k~ekk-k~~gra~~R~qynrRf~~~~~   47 (50)
T PRK09336          3 SHGSLTKAGKVRSQTPKIPPKPKK-NEVPRVRNRREYERRVLKARQ   47 (50)
T ss_pred             cchhhhhcccccCCCCCcchhhhc-cCCchhHHHHHHHHHHhhhhc
Confidence            899999999999999999999985 457999999999999999874

>COG4919 Ribosomal protein S30 [Translation, ribosomal structure and biogenesis]

Probab=99.54  E-value=8.8e-16  Score=98.56  Aligned_cols=45  Identities=44%  Similarity=0.654  Sum_probs=41.5

Q ss_pred             hhhhhhccCcccCCCccccccccccCCChhhhhhhhcccceeecee
Q 042287           39 VHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVV   84 (97)
Q Consensus        39 vHGSLarAGKVR~QTPKV~kqeKkK~~~gRak~R~qYnrRfvnv~~   84 (97)
                      +||||++|||||+||||++.++| |+-++|.|+|..|.+|++.+..
T Consensus         3 sHGSLTKAGKVR~QTPkipaK~k-kn~~PR~rNr~~Y~~Rv~ka~s   47 (54)
T COG4919           3 SHGSLTKAGKVRKQTPKIPAKQK-KNYPPRLRNRLKYQVRVEKAAS   47 (54)
T ss_pred             CccccccccchhccCCCCCcccc-ccCChhHHHHHHHHHHHHHHHh
Confidence            69999999999999999998887 5889999999999999988764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	97
3iz6_Z	62	Localization Of The Small Subunit Ribosomal Protein		7e-23
3zey_Y	66	High-resolution Cryo-electron Microscopy Structure		6e-10
3izb_Z	63	Localization Of The Small Subunit Ribosomal Protein		8e-09
2xzm_X	80	Crystal Structure Of The Eukaryotic 40s Ribosomal S		1e-07
3j0l_X	68	Core Of Mammalian 80s Pre-Ribosome In Complex With		1e-04

>pdb|3IZ6|Z Chain Z, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 62

Iteration: 1
 Score =  102 bits (253), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 52/62 (83%), Positives = 52/62 (83%)
Query: 36 MGKVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 95
          MGKVHGSLARAGKVRGQTP          PRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
Query: 96 EK 97
          EK
Sbjct: 61 EK 62

>pdb|3ZEY|Y Chain Y, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 66

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 36/54 (66%)
Query: 36 MGKVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKK 89
          MGKVHGSLARAGKV+ QTP          PRGRA KR++Y +R++   +  G+K
Sbjct: 1  MGKVHGSLARAGKVKNQTPKVSKQEKKKQPRGRAFKRLKYTQRYLAKTLKAGEK 54

>pdb|3IZB|Z Chain Z, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 63

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 36/55 (65%)
Query: 36 MGKVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKR 90
          M KVHGSLARAGKV+ QTP          P+GRA+KR+ Y RRFV   +  GK+R
Sbjct: 1  MAKVHGSLARAGKVKSQTPKVEKTEKPKKPKGRAYKRLLYTRRFVNVTLVNGKRR 55

>pdb|2XZM|X Chain X, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 80

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 36 MGKVHGSLARAGKVRGQTPXXXXXXX-XXXPRGRAHKRMQYNRRFVTAVVGFG--KKRGP 92
          MG++HG+LA+AGKVR QTP           P+GR++KR+ YNRR+   ++     K++ P
Sbjct: 1  MGRMHGTLAKAGKVRKQTPKVEKKDKPRKTPKGRSYKRILYNRRYAPHILATDPKKRKSP 60
Query: 93 N 93
          N
Sbjct: 61 N 61

>pdb|3J0L|X Chain X, Core Of Mammalian 80s Pre-Ribosome In Complex With Trnas Fitted To A 9.8a Cryo-Em Map: Classic Pre State 1 Length = 68

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 42 SLARAGKVRGQTPXXXXXXX-XXXPRGRAHKRMQYNRRFVTAVVGFG--KKRGPN 93
          +LA+AGKVR QTP           P+GR++KR+ YNRR+   ++     K++ PN
Sbjct: 1  TLAKAGKVRKQTPKVEKKDKPRKTPKGRSYKRILYNRRYAPHILATDPKKRKSPN 55
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	97
3iz6_Z	62	40S ribosomal protein S30 (S30E); eukaryotic ribos	1e-17
3u5c_E	261	RP5, S7, YS6, 40S ribosomal protein S4-A; translat	4e-17
2xzm_X	80	RPS30E; ribosome, translation; 3.93A {Tetrahymena	3e-14

>3iz6_Z 40S ribosomal protein S30 (S30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 62

 Score = 69.3 bits (169), Expect = 1e-17
 Identities = 62/62 (100%), Positives = 62/62 (100%)

Query: 36 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 95
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60

Query: 96 EK 97
          EK
Sbjct: 61 EK 62

>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E Length = 261

 Score = 68.1 bits (166), Expect = 4e-17
 Identities = 2/63 (3%), Positives = 11/63 (17%), Gaps = 1/63 (1%)

Query: 36 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKR-GPNS 94
          M +      +                          +++ +   +  +    K       
Sbjct: 1  MARGPKKHLKRLAAPHHWLLDKLSGCYAPRPSAGPHKLRESLPLIVFLRNRLKYALNGRE 60

Query: 95 SEK 97
           + 
Sbjct: 61 VKA 63

>2xzm_X RPS30E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_X 3j0o_X 3j0l_X 3j0p_X 3j0q_X Length = 80

 Score = 60.9 bits (147), Expect = 3e-14
 Identities = 32/63 (50%), Positives = 47/63 (74%), Gaps = 3/63 (4%)

Query: 36 MGKVHGSLARAGKVRGQTPKVAKQDK-KKKPRGRAHKRMQYNRRFVTAVVGFG--KKRGP 92
          MG++HG+LA+AGKVR QTPKV K+DK +K P+GR++KR+ YNRR+   ++     K++ P
Sbjct: 1  MGRMHGTLAKAGKVRKQTPKVEKKDKPRKTPKGRSYKRILYNRRYAPHILATDPKKRKSP 60

Query: 93 NSS 95
          N  
Sbjct: 61 NWH 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	97
3iz6_Z	62	40S ribosomal protein S30 (S30E); eukaryotic ribos	100.0
3u5c_e	63	40S ribosomal protein S30-A, 40S ribosomal protein	100.0
2xzm_X	80	RPS30E; ribosome, translation; 3.93A {Tetrahymena	99.97
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	98.28
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	94.08
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	93.78
1we6_A	111	Splicing factor, putative; structural genomics, ub	93.47
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	91.24
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	90.19
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	89.86
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	89.51
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	88.9
3u5c_f	152	40S ribosomal protein S31; translation, ribosome,	86.7

>3iz6_Z 40S ribosomal protein S30 (S30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=4.2e-38  Score=205.14  Aligned_cols=62  Identities=100%  Similarity=1.428  Sum_probs=60.4

Q ss_pred             ccchhhhhhccCcccCCCccccccccccCCChhhhhhhhcccceeeceecCCccCCCCCCCC
Q 042287           36 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK   97 (97)
Q Consensus        36 ~GKvHGSLarAGKVR~QTPKV~kqeKkK~~~gRak~R~qYnrRfvnv~~~~g~krgpN~~~~   97 (97)
                      |||||||||+|||||+||||||+|||+|+++|||++|++|||||+||+++||+|++||+|++
T Consensus         1 mGKvHGSLarAGKVR~QTPKV~kqeKkk~~~gRak~R~~YnrRfvnv~~~~g~kr~~n~n~~   62 (62)
T 3iz6_Z            1 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK   62 (62)
T ss_dssp             CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHCCCCCCSCHHHHHHTTTCCCCCCC
T ss_pred             CCcccchhhccccccCCCCCcchhhhccCCchHHHHHHHhhhhhhhcccccCCccCCCCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999974

>3u5c_e 40S ribosomal protein S30-A, 40S ribosomal protein S29-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_Z* 3j16_E 3u5g_e

Probab=100.00  E-value=3.5e-36  Score=196.53  Aligned_cols=61  Identities=61%  Similarity=0.902  Sum_probs=56.4

Q ss_pred             ccchhhhhhccCcccCCCccccccccccCCChhhhhhhhcccceeeceecCCc-cCCCCCCC
Q 042287           36 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGK-KRGPNSSE   96 (97)
Q Consensus        36 ~GKvHGSLarAGKVR~QTPKV~kqeKkK~~~gRak~R~qYnrRfvnv~~~~g~-krgpN~~~   96 (97)
                      |||||||||+|||||+||||||+|||+|+++|||++|++|||||+|++++||+ +++||++.
T Consensus         1 mgKvHGSLarAGKVR~QTPKV~k~eKkk~~~gRak~R~~YnrRfvnv~~~~gkrk~~pn~~~   62 (63)
T 3u5c_e            1 MAKVHGSLARAGKVKSQTPKVEKTEKPKKPKGRAYKRLLYTRRFVNVTLVNGKRRMNPGPSV   62 (63)
T ss_dssp             -CCCBCCCTTTTHHHHHSCCCCCCCCCCCCCTHHHHHHHHHHHHTSCCCCSSSCCSSCCCC-
T ss_pred             CCcccchhhhcccccCCCCCCcccccccCCchhHHHHHHhhhhheeecccCCcccCCCCCCC
Confidence            89999999999999999999999999999999999999999999999999995 67888864

>2xzm_X RPS30E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_X 3j0o_X 3j0l_X 3j0p_X 3j0q_X

Probab=99.97  E-value=4.9e-33  Score=188.36  Aligned_cols=61  Identities=56%  Similarity=0.889  Sum_probs=52.1

Q ss_pred             ccchhhhhhccCcccCCCccccccccc-cCCChhhhhhhhcccceeecee-cCCccCC-CCCCC
Q 042287           36 MGKVHGSLARAGKVRGQTPKVAKQDKK-KKPRGRAHKRMQYNRRFVTAVV-GFGKKRG-PNSSE   96 (97)
Q Consensus        36 ~GKvHGSLarAGKVR~QTPKV~kqeKk-K~~~gRak~R~qYnrRfvnv~~-~~g~krg-pN~~~   96 (97)
                      |||||||||+|||||+|||||++|||+ |.++|||++|++|||||+|+++ +||++++ ||+++
T Consensus         1 mGkvHGSLarAGKVR~QTPKV~kqeKk~K~~~GRak~R~~YnrRfv~~~~~~~gkrk~npn~~~   64 (80)
T 2xzm_X            1 MGRMHGTLAKAGKVRKQTPKVEKKDKPRKTPKGRSYKRILYNRRYAPHILATDPKKRKSPNWHA   64 (80)
T ss_dssp             ------CCTTTTHHHHHSCCCCCCCCSSCCCCSHHHHHHHHHHHSSTTTTTSCSSSCCCTTTCS
T ss_pred             CccchhhhhccccccccCCCcchhhhcccCCchhHHHHHHHHHhhhhhcccccccccCCCCcch
Confidence            899999999999999999999999998 8999999999999999999999 8998886 88876

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9

Probab=98.28  E-value=1.8e-07  Score=69.83  Aligned_cols=58  Identities=21%  Similarity=0.070  Sum_probs=24.1

Q ss_pred             ccccCCCCCCCcccchhhhhhhhhhhhHhhhhcccchhhhhhccCcccCCCccccccccccCCChhhh
Q 042287            3 TLDSCCLPQFGRERVSQQQQQQQRPTRLLKRSAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAH   70 (97)
Q Consensus         3 ~l~s~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~GKvHGSLarAGKVR~QTPKV~kqeKkK~~~gRak   70 (97)
                      +|...|-++.|+..++     ....++|+.++++|++|    |+ ||..||||+++++++|.+.+..+
T Consensus        42 RLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG~~k----rk-K~~~~tPK~~k~~kKkvkl~~Lk   99 (189)
T 2xzm_9           42 TLVNNGFIAPNTELVT-----DDVTYYLSLKLLGGKKK----KK-KKSYTTKKKTKHRHVHTKLGALA   99 (189)
T ss_dssp             -----------------------------------CCC----CC-CCCCCSSSCCCCCCCCCCCSCCC
T ss_pred             EEEecCeECCCCCccc-----CCCEEEEEEecCCCccc----cc-ccccCCCccccccccccCCceee
Confidence            5667788888888888     44556788899999999    88 99999999999998877775544

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p

Probab=94.08  E-value=0.0094  Score=39.91  Aligned_cols=43  Identities=19%  Similarity=0.065  Sum_probs=7.2

Q ss_pred             ccccCCCCCCCcccchhhhhhhhhhhhHhhhhcccchhhhhhc
Q 042287            3 TLDSCCLPQFGRERVSQQQQQQQRPTRLLKRSAMGKVHGSLAR   45 (97)
Q Consensus         3 ~l~s~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~GKvHGSLar   45 (97)
                      .|...|-.+.|+..++++.-..-....|..++.+|++|+||+.
T Consensus        42 rLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG~~~~sl~~   84 (128)
T 3u5e_m           42 RLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKA   84 (128)
T ss_dssp             -----------------------------------CCCHHHHH
T ss_pred             EEEECCEECCCCCchhhhccCCCCEEEEEEEcCCCCCChhHHH
Confidence            4566778888888999998888888899999999999999984

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=93.78  E-value=0.0051  Score=37.46  Aligned_cols=39  Identities=15%  Similarity=0.008  Sum_probs=32.1

Q ss_pred             ccccCCCCCCCcccchhhhhhhhhhhhHhhhhcccchhh
Q 042287            3 TLDSCCLPQFGRERVSQQQQQQQRPTRLLKRSAMGKVHG   41 (97)
Q Consensus         3 ~l~s~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~GKvHG   41 (97)
                      .|...|-++.|+..++++.-..-...+|..++++|++||
T Consensus        49 rL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG~~~g   87 (87)
T 1wh3_A           49 QLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSGPSSG   87 (87)
T ss_dssp             EEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCCSCCC
T ss_pred             EEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCCCCCC
Confidence            455667778888889998877777788888999999998

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=93.47  E-value=0.0099  Score=38.69  Aligned_cols=39  Identities=13%  Similarity=-0.018  Sum_probs=32.5

Q ss_pred             ccccCCCCCCCcccchhhhhhhhhhhhHhhhhcccchhh
Q 042287            3 TLDSCCLPQFGRERVSQQQQQQQRPTRLLKRSAMGKVHG   41 (97)
Q Consensus         3 ~l~s~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~GKvHG   41 (97)
                      .|...|-.+.|+..++++.-..-....|..++.+||+||
T Consensus        73 rL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~~GGk~h~  111 (111)
T 1we6_A           73 KLSGKAGFLKDNMSLAHYNVGAGEILTLSLRERSGPSSG  111 (111)
T ss_dssp             EEECSSSBCCTTSBTTTTTCSSSCEEEEECSSCCSSCCC
T ss_pred             EEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCCCCC
Confidence            455677788888889988877777788888999999998

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}

Probab=91.24  E-value=0.0044  Score=41.11  Aligned_cols=57  Identities=14%  Similarity=0.083  Sum_probs=45.8

Q ss_pred             ccccCCCCCCCcccchhhhhhhhhhhhHhhhhcccchhhhhhccCcccCCCccccccc
Q 042287            3 TLDSCCLPQFGRERVSQQQQQQQRPTRLLKRSAMGKVHGSLARAGKVRGQTPKVAKQD   60 (97)
Q Consensus         3 ~l~s~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~GKvHGSLarAGKVR~QTPKV~kqe   60 (97)
                      .|...|-++.|+..++++.-.......|..++.+|+ ++++..++.+.+||++++-++
T Consensus        51 rLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~-~~~~~~~~~~~g~~~~~~v~~  107 (114)
T 2kdi_A           51 RLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGS-MGGAADEEELIRKAIELSLKE  107 (114)
T ss_dssp             EEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSC-CCSSCSSSHHHHHHHHSSSHH
T ss_pred             EEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCc-eeeccccccccCceEEEEecc
Confidence            455567788888889988877777777778888885 789999999999999988653

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=90.19  E-value=0.021  Score=34.15  Aligned_cols=40  Identities=18%  Similarity=0.013  Sum_probs=27.2

Q ss_pred             ccccCCCCCCCcccchhhhhhhhhhhhHhhhhcccchhhh
Q 042287            3 TLDSCCLPQFGRERVSQQQQQQQRPTRLLKRSAMGKVHGS   42 (97)
Q Consensus         3 ~l~s~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~GKvHGS   42 (97)
                      .|...|-++.|+..++++.-..-...+|..++.+|+.|||
T Consensus        45 rL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~g~~~   84 (85)
T 3n3k_B           45 RLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGGGGGGS   84 (85)
T ss_dssp             EEEETBEECCTTCBTTTTTCCTTCEEEEEECCC-------
T ss_pred             EEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCCCCCCC
Confidence            4566777888888999988777788888889999999986

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1

Probab=89.86  E-value=0.033  Score=33.22  Aligned_cols=40  Identities=23%  Similarity=0.003  Sum_probs=28.8

Q ss_pred             ccccCCCCCCCcccchhhhhhhhhhhhHhhhhcccchhhh
Q 042287            3 TLDSCCLPQFGRERVSQQQQQQQRPTRLLKRSAMGKVHGS   42 (97)
Q Consensus         3 ~l~s~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~GKvHGS   42 (97)
                      .|...|-.+.|+..++++.-..-...+|..++.+|+.+||
T Consensus        45 rL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG~ggg~   84 (85)
T 3mtn_B           45 RLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGGGGGGS   84 (85)
T ss_dssp             EEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC-----
T ss_pred             EEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCCCCCCC
Confidence            4556777888888999988777778888889999999987

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B

Probab=89.51  E-value=0.03  Score=34.87  Aligned_cols=42  Identities=7%  Similarity=-0.167  Sum_probs=27.4

Q ss_pred             ccccCCCCCCCcccchhhhhhhhhhhhHhhhhcccchhhhhh
Q 042287            3 TLDSCCLPQFGRERVSQQQQQQQRPTRLLKRSAMGKVHGSLA   44 (97)
Q Consensus         3 ~l~s~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~GKvHGSLa   44 (97)
                      +|...|-.+.|+..++++.-..-....|..++.+|+++||-+
T Consensus        42 rLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~~~~~~~   83 (88)
T 4fbj_B           42 RLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGGGLRQKH   83 (88)
T ss_dssp             EEEETTEECCTTSBTTTTTCCTTCEEEEECBCC---------
T ss_pred             EEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCCCCCccc
Confidence            456678888898899999877777888888999999999865

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A

Probab=88.90  E-value=0.028  Score=36.82  Aligned_cols=39  Identities=10%  Similarity=0.014  Sum_probs=31.3

Q ss_pred             ccccCCCCCCCcccchhhhhhhhhhhhHhhhhcccchhh
Q 042287            3 TLDSCCLPQFGRERVSQQQQQQQRPTRLLKRSAMGKVHG   41 (97)
Q Consensus         3 ~l~s~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~GKvHG   41 (97)
                      .|...|-.+.|+..++++.-..-...+|..++.+||+||
T Consensus        77 rL~~~Gk~L~D~~tL~~y~i~~g~~i~lv~rl~GGk~~~  115 (115)
T 1we7_A           77 KLQYEGIFIKDSNSLAYYNMASGAVIHLALKERSGPSSG  115 (115)
T ss_dssp             EEEETTEEECTTSBHHHHTCCSSCEEEEEECCCSCCSCC
T ss_pred             EEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCCCCC
Confidence            355567777888889988877777788888999999997

>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f

Probab=86.70  E-value=0.25  Score=34.75  Aligned_cols=59  Identities=10%  Similarity=-0.031  Sum_probs=13.7

Q ss_pred             ccccCCCCCCCcccchhhhhhhhhhhhHhhhhcccchhhhhhccCcccCCCccccccccccCCC
Q 042287            3 TLDSCCLPQFGRERVSQQQQQQQRPTRLLKRSAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPR   66 (97)
Q Consensus         3 ~l~s~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~GKvHGSLarAGKVR~QTPKV~kqeKkK~~~   66 (97)
                      .|...|-.+.|+..++++.-..-...+|..++.+|.-     +--|..-.|||..+..+||-+-
T Consensus        42 rLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GGgK-----krkKk~~t~Pkk~~~~~~~~~~  100 (152)
T 3u5c_f           42 RLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGK-----KRKXXXXXXXXXXXXXXXXXXX  100 (152)
T ss_dssp             ---------------------------------------------CCCCCCCSCCCCCCCCCCC
T ss_pred             EEEECCEEccccCcHHHcCCCCCCEEEEEeeccCCCc-----Cccccccccccccccccccccc
Confidence            4666788888988999998777778888888887731     2235667889998887655443

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00