Citrus Sinensis ID: 042318

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------
MRRIKPSLRSPKSIPSIFRALHNQNDRSNAGPLASQLKSRSVVRFSGPDTIKYLQGLLTNDVRKFGEPAGKREKTSTLTTPNLPYESASPVYAALLTPQGKFLYDLFLYAPPPPEEKLDRTGWSGPSSGSHDRSVEVFADVDGSVLDELLHTFKKYRLRSKVEIENVAEDFSCWQRFGGKLSENSSLQKNQRLPQLAGVLALIVLACRLHMVMMLDGNGLRILDWIVLDLGESSNLVEYVTPLVEADKETDEMNYLLCRLEQGVAEGSTEIPKGEAMPLEYNLAGLNAISFDKGCYVGQELIARTHHRGVIRKRLLPLRFLDNRGNELEQKVAPGSEVIDAESGKKAGKVTTALGCRGLGVLRLEEVLKESGALTIQGQEDVRVEAIRPNWWPAEWLQENQQHSVAA
ccccccccccccccccccccccccccccccccEEEEccccEEEEEEcccHHHHHHHHHHccccccccccccccccccccccccccccccccEEccccccccEEEEEEEEccccccccccccccccccccccccccEEEEEEcccHHHHHHHHHHHcccccccEEEEccccEEEEEEEccccccccHHHcccccccccccHHHEEHHcccEEEEEcccccEEEEEEEEccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccEEEEEEEEccccccccccccccccEEEcccccccEEEEEEEccEEEEEEEEcccccccccEEEccccccEEEEEcccccccccccccccccccc
ccccccccccccccccccccHccccccccccccHccccccEEEEEEcccHHHHHHHHcHccHHHccccccccccccccccccccccccccHEEEEEcccccEEEEEEEEEccccccccccccccccccccccccccEEEEccHHHHHHHHHHHHHHHHHcEEEEcccccccEEEEEEcccccccccccccccHHHHHcccccccccccccccccccccccccccccHHHccHHHHHHcccccHHHccccccHHHHHHHHHHcccccccccccccccccHHHHHHHHcccEcccccEccEEEEEEEccccEEEEEEEEEEEcccccccccccccccccEEEcccccEEEEEEEcccccEEEEEEHHHHHHHHHcccccccccEEEEEEccccccHHHHHHcccccccc
mrrikpslrspksiPSIFRALHnqndrsnagplasqlksrsvvrfsgpdTIKYLQGLLTNDvrkfgepagkrektstlttpnlpyesaspvYAALLtpqgkflydlflyappppeekldrtgwsgpssgshdrsvevfadVDGSVLDELLHTFKKYRLRSKVEIENVAEDFScwqrfggklsensslqknqrlpQLAGVLALIVLACRLHMVMMLDGNGLRILDWIVLDlgessnlvEYVTPlveadketDEMNYLLCRLEQgvaegsteipkgeampleynlaglnaisfdkgcyvGQELIarthhrgvirkrllplrfldnrgneleqkvapgsevidaesgkkagkvttalgcrglgvLRLEEVLKEsgaltiqgqedvrveairpnwwpaewlqenqqhsvaa
mrrikpslrspksipSIFRALHNQNDRSNAGPLASQLKSRSVVRFSGPDTIKYLQGLLTNDVRKfgepagkrektstlttpnlpyesASPVYAALLTPQGKFLYDLFLYAPPPPEEKLDRTGWSGPSSGSHDRSVEVFADVDGSVLDELLHTFKKYRLRSKVEIENVAEDFSCWQRFGGKLSENSSLQKNQRLPQLAGVLALIVLACRLHMVMMLDGNGLRILDWIVLDLGESSNLVEYVTPLVEADKETDEMNYLLCRLEQGVAEGSTEIPKGEAMPLEYNLAGLNAISFDKGCYVGQELiarthhrgvirkrllplrfldnrgneleqkvapgsevidaesgkkagkvttalgcrglgVLRLEEVLKEsgaltiqgqedvRVEAIRPNWwpaewlqenqqhsvaa
MRRIKPSLRSPKSIPSIFRALHNQNDRSNAGPLASQLKSRSVVRFSGPDTIKYLQGLLTNDVRKFGEPAGKREKTSTLTTPNLPYESASPVYAALLTPQGKFLYDLFLYAPPPPEEKLDRTGWSGPSSGSHDRSVEVFADVDGSVLDELLHTFKKYRLRSKVEIENVAEDFSCWQRFGGKLSENSSLQKNQRLPQLAGVLALIVLACRLHMVMMLDGNGLRILDWIVLDLGESSNLVEYVTPLVEADKETDEMNYLLCRLEQGVAEGSTEIPKGEAMPLEYNLAGLNAISFDKGCYVGQELIARTHHRGVIRKRLLPLRFLDNRGNELEQKVAPGSEVIDAESGKKAGKVTTALGCRGLGVLRLEEVLKESGALTIQGQEDVRVEAIRPNWWPAEWLQENQQHSVAA
******************************************VRFSGPDTIKYLQGLLTNDVR************************ASPVYAALLTPQGKFLYDLFLYA*************************EVFADVDGSVLDELLHTFKKYRLRSKVEIENVAEDFSCWQRFGGKL***********LPQLAGVLALIVLACRLHMVMMLDGNGLRILDWIVLDLGESSNLVEYVTPLVEADKETDEMNYLLCRLEQGVAEGSTEIPKGEAMPLEYNLAGLNAISFDKGCYVGQELIARTHHRGVIRKRLLPLRFLDNR***********************GKVTTALGCRGLGVLRLEEVLKESGALTIQGQEDVRVEAIRPNWWPAEWL**********
********************************LASQLKSRSVVRFSGPDTIKYLQGLLTNDVRKFGEP**************LPYESASPVYAALLTPQGKFLYDLFLYAPPPPEEKLDRTGWSGPSSGSHDRSVEVFADVDGSVLDELLHTFKKYRLRSKVEIENVAEDFSCWQRFGGKLSENSSLQKNQRLPQLAGVLALIVLACRLHMVMMLDGNGLRILDWIVLDLGESSNLVEYVTPLVEADKETDEMNYLLCRLEQGVAEGSTEIPKGEAMPLEYNLAGLNAISFDKGCYVGQELIARTHHRGVIRKRLLPLRFLDN*************EVIDAESGKKAGKVTTALGCRGLGVLRLEEVLKES*******QEDVRVEAIRPNWWPA*************
MRRIKPSLRSPKSIPSIFRALHNQNDRSNAGPLASQLKSRSVVRFSGPDTIKYLQGLLTNDVRKFGEPAGKREKTSTLTTPNLPYESASPVYAALLTPQGKFLYDLFLYAPPPPEE****************RSVEVFADVDGSVLDELLHTFKKYRLRSKVEIENVAEDFSCWQRFGGKLSENSSLQKNQRLPQLAGVLALIVLACRLHMVMMLDGNGLRILDWIVLDLGESSNLVEYVTPLVEADKETDEMNYLLCRLEQGVAEGSTEIPKGEAMPLEYNLAGLNAISFDKGCYVGQELIARTHHRGVIRKRLLPLRFLDNRGNELEQKVAPGSEVIDAESGKKAGKVTTALGCRGLGVLRLEEVLKESGALTIQGQEDVRVEAIRPNWWPAEWLQ*********
*************I*SIFRA*********AGPLASQLKSRSVVRFSGPDTIKYLQGLLTNDVRKFGE******KTSTLTTPNLPYESASPVYAALLTPQGKFLYDLFLYAPPP********************SVEVFADVDGSVLDELLHTFKKYRLRSKVEIENVAEDFSCWQRFGGK**********QRLPQLAGVLALIVLACRLHMVMMLDGNGLRILDWIVLDLGESSNLVEYVTPLVEADKETDEMNYLLCRLEQGVAEGSTEIPKGEAMPLEYNLAGLNAISFDKGCYVGQELIARTHHRGVIRKRLLPLRFLDNRGNELEQKVAPGSEVIDAESGKKAGKVTTALGCRGLGVLRLEEVLKESGALTIQGQEDVRVEAIRPNWWPAEWLQEN*******
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MRRIKPSLRSPKSIPSIFRALHNQNDRSNAGPLASQLKSRSVVRFSGPDTIKYLQGLLTNDVRKFGEPAGKREKTSTLTTPNLPYESASPVYAALLTPQGKFLYDLFLYAPPPPEEKLDRTGWSGPSSGSHDRSVEVFADVDGSVLDELLHTFKKYRLRSKVEIENVAEDFSCWQRFGGKLSENSSLQKNQRLPQLAGVLALIVLACRLHMVMMLDGNGLRILDWIVLDLGESSNLVEYVTPLVEADKETDEMNYLLCRLEQGVAEGSTEIPKGEAMPLEYNLAGLNAISFDKGCYVGQELIARTHHRGVIRKRLLPLRFLDNRGNELEQKVAPGSEVIDAESGKKAGKVTTALGCRGLGVLRLEEVLKESGALTIQGQEDVRVEAIRPNWWPAEWLQENQQHSVAA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query407 2.2.26 [Sep-21-2011]
Q4P7A4403 Putative transferase CAF1 N/A no 0.766 0.774 0.283 8e-37
Q8CAK1358 Putative transferase CAF1 yes no 0.734 0.835 0.323 6e-36
B8JMH0354 Putative transferase CAF1 yes no 0.727 0.836 0.321 2e-35
Q5T440356 Putative transferase CAF1 yes no 0.734 0.839 0.319 2e-32
Q54NS1408 Putative transferase caf1 yes no 0.592 0.590 0.327 7e-30
A4R8F9389 Putative transferase CAF1 N/A no 0.714 0.748 0.290 2e-27
Q2H6N9437 Putative transferase CAF1 N/A no 0.832 0.775 0.288 3e-27
Q7RYZ1439 Putative transferase caf- N/A no 0.678 0.628 0.297 3e-24
A2R472444 Putative transferase caf1 yes no 0.786 0.720 0.292 5e-24
A1CBI9450 Putative transferase caf1 N/A no 0.732 0.662 0.268 2e-23
>sp|Q4P7A4|CAF17_USTMA Putative transferase CAF17, mitochondrial OS=Ustilago maydis (strain 521 / FGSC 9021) GN=CAF17 PE=3 SV=1 Back     alignment and function desciption
 Score =  155 bits (391), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 116/409 (28%), Positives = 184/409 (44%), Gaps = 97/409 (23%)

Query: 26  DRSNAGPLASQLKSRSVVRFSGPDTIKYLQGLLTNDVRKFGEPAGKREKTSTLTTPNLPY 85
           D++++    +++  R VV+ SG DT+K LQGL++NDV+           T T   PN+  
Sbjct: 44  DKTSSTWKLAKVPHRGVVQVSGRDTVKLLQGLVSNDVKALDS------TTLTHQPPNM-- 95

Query: 86  ESASPVYAALLTPQGKFLYDLFLYAPPPPEEKLDRTGWSGPSSGSHDRSVEVFADVDGSV 145
                VYA  + PQG+ L D+F++  P                 + D S     D+D   
Sbjct: 96  -----VYAGFMNPQGRMLADVFIHRQP----------------ANQDGSPRWLLDIDSRT 134

Query: 146 LDELLHTFKKYRLRSKVEIENVAEDFSCWQRFGGKLSENSSLQKNQRLPQLAGVLALIVL 205
           L  L+   KK++LRSKV++ +++ D+   Q +            +Q  P +A  L++   
Sbjct: 135 LPSLVAFIKKFKLRSKVKLTDLSTDYHVVQAWDSN---------SQAPPTIAEKLSIDPR 185

Query: 206 ACRLHMVMMLDGNGLRILDWIVLDLGESSNLVEYVTPLVEADKETDEMNYLLCRLEQGVA 265
           +  +    +L           +LD+  +++ V             D + Y L R+  GVA
Sbjct: 186 SPSIGYRGVLSAAE-------ILDVAAAASTV-------------DGLEYTLHRITNGVA 225

Query: 266 EGSTEIPKGEAMPLEYNLAGLNAISFDKGCYVGQELIARTHHRGVIRKRLLPLRF----- 320
           EG+ + P+  ++PLE NL  ++ + F KGCYVGQEL ARTHH GV+RKR++PL F     
Sbjct: 226 EGALDFPQASSLPLENNLDYMHGVDFRKGCYVGQELTARTHHTGVVRKRIVPLSFYLAGT 285

Query: 321 ----------------LDNRGNELEQK-VAPGSEVIDAES-GKKAGKVTTALGCRGLGVL 362
                           L     E+  K ++  SE     + GK AGK T+ +   GL  L
Sbjct: 286 PPPASIHDVDPAFPHQLPTHLAEIRSKPISTASEAATKPARGKAAGKFTSGVYNVGLACL 345

Query: 363 RLEEVLK----------------ESGALTIQGQEDVRVEAIRPNWWPAE 395
           RLE+V +                E   L+  G+  +      P+WWP +
Sbjct: 346 RLEQVRRWADSSSADPNSKHDALEFSVLSADGETTLLARPWIPSWWPHD 394

Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631)
EC: 2EC: .EC: 1EC: .EC: -EC: .EC: -
>sp|Q8CAK1|CAF17_MOUSE Putative transferase CAF17 homolog, mitochondrial OS=Mus musculus GN=Iba57 PE=2 SV=1 Back     alignment and function description
>sp|B8JMH0|CAF17_DANRE Putative transferase CAF17 homolog, mitochondrial OS=Danio rerio GN=iba57 PE=2 SV=1 Back     alignment and function description
>sp|Q5T440|CAF17_HUMAN Putative transferase CAF17, mitochondrial OS=Homo sapiens GN=IBA57 PE=1 SV=1 Back     alignment and function description
>sp|Q54NS1|CAF17_DICDI Putative transferase caf17 homolog, mitochondrial OS=Dictyostelium discoideum GN=caf17 PE=3 SV=1 Back     alignment and function description
>sp|A4R8F9|CAF17_MAGO7 Putative transferase CAF17, mitochondrial OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=CAF17 PE=3 SV=1 Back     alignment and function description
>sp|Q2H6N9|CAF17_CHAGB Putative transferase CAF17, mitochondrial OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=CAF17 PE=3 SV=1 Back     alignment and function description
>sp|Q7RYZ1|CAF17_NEUCR Putative transferase caf-17, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=caf-17 PE=3 SV=1 Back     alignment and function description
>sp|A2R472|CAF17_ASPNC Putative transferase caf17, mitochondrial OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=caf17 PE=3 SV=1 Back     alignment and function description
>sp|A1CBI9|CAF17_ASPCL Putative transferase caf17, mitochondrial OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=caf17 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query407
356540496410 PREDICTED: putative transferase CAF17 ho 0.958 0.951 0.615 1e-129
356497167411 PREDICTED: LOW QUALITY PROTEIN: putative 0.958 0.948 0.606 1e-127
255537089391 aminomethyltransferase, putative [Ricinu 0.923 0.961 0.636 1e-126
224124952392 predicted protein [Populus trichocarpa] 0.933 0.969 0.621 1e-125
297809523393 aminomethyltransferase [Arabidopsis lyra 0.933 0.966 0.608 1e-124
296082848370 unnamed protein product [Vitis vinifera] 0.904 0.994 0.652 1e-124
79470337393 glycine cleavage T-protein family protei 0.899 0.931 0.613 1e-123
449494308402 PREDICTED: LOW QUALITY PROTEIN: putative 0.884 0.895 0.623 1e-120
449460429402 PREDICTED: putative transferase CAF17 ho 0.884 0.895 0.623 1e-120
4586118363 putative protein [Arabidopsis thaliana] 0.756 0.848 0.601 1e-111
>gi|356540496|ref|XP_003538724.1| PREDICTED: putative transferase CAF17 homolog, mitochondrial-like [Glycine max] Back     alignment and taxonomy information
 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 253/411 (61%), Positives = 294/411 (71%), Gaps = 21/411 (5%)

Query: 11  PKSIPSIFRALHN-------QNDRS-----NAGPLASQLKSRSVVRFSGPDTIKYLQGLL 58
           PKSI   FR +H+        N+R      +AGP+ S LKSRSV+RF GPDT+K+LQGLL
Sbjct: 7   PKSIAQRFRGIHHSPCKQLCNNNRCEGQVQSAGPVGSLLKSRSVIRFRGPDTLKFLQGLL 66

Query: 59  TNDVRKFGEPAGKREKTSTLTTPNLPYESASPVYAALLTPQGKFLYDLFLYAPPPPEEKL 118
           TNDVR FGE  G R  T  L TPN+P  S  P+YAALLTPQG+FLYDLFLY PP    KL
Sbjct: 67  TNDVRNFGEAVGDR--TENLPTPNVPATSVPPIYAALLTPQGRFLYDLFLYKPPTCHTKL 124

Query: 119 DRTGWSGPSSGSHDRSVEVFADVDGSVLDELLHTFKKYRLRSKVEIENVAEDFSCWQRFG 178
           D TG +GP S  H+    +FADVD SVLDELL T  KYRLRSKVEI++V+ DFSCWQR+G
Sbjct: 125 DHTG-TGPDSKPHE-PFHMFADVDASVLDELLQTLNKYRLRSKVEIDDVSSDFSCWQRYG 182

Query: 179 GKLSENSSLQKNQRLPQLAGV-LALIVLACRLHMVMMLDGNGLRILDWIVLDLGESSNLV 237
             LSE SS  +    P+ A V  A  V    +      D       D  ++ LG      
Sbjct: 183 AGLSEKSSQVEE---PEAASVGWAAGVDRTAMSSSQGSDQGWQWFKDPRLVCLGFRGIFP 239

Query: 238 EYVTP-LVEADKETDEMNYLLCRLEQGVAEGSTEIPKGEAMPLEYNLAGLNAISFDKGCY 296
             +TP L+E DKETDE N+LL R+E+GVAEGSTEIPKGEA+PLEYNLAGLNAISFDKGCY
Sbjct: 240 SNITPPLIEVDKETDEQNFLLWRIEKGVAEGSTEIPKGEAVPLEYNLAGLNAISFDKGCY 299

Query: 297 VGQELIARTHHRGVIRKRLLPLRFLDNRGNELEQKVAPGSEVIDAESGKKAGKVTTALGC 356
           VGQELIARTHHRGVIRKR++PLRFLDN G EL  KV PGSEV++  SGKKAG VTTALGC
Sbjct: 300 VGQELIARTHHRGVIRKRIVPLRFLDNDGKELVNKVIPGSEVMNTASGKKAGTVTTALGC 359

Query: 357 RGLGVLRLEEVLKESGALTIQGQEDVRVEAIRPNWWPAEWLQENQQHSVAA 407
           RGLG+LR+EE LK S AL+IQGQEDV+V A RP+WWP+EWLQ+  QH+  A
Sbjct: 360 RGLGLLRVEEALKGSSALSIQGQEDVKVVASRPDWWPSEWLQDQGQHAAFA 410

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356497167|ref|XP_003517434.1| PREDICTED: LOW QUALITY PROTEIN: putative transferase CAF17 homolog, mitochondrial-like [Glycine max] Back     alignment and taxonomy information
>gi|255537089|ref|XP_002509611.1| aminomethyltransferase, putative [Ricinus communis] gi|223549510|gb|EEF50998.1| aminomethyltransferase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224124952|ref|XP_002329854.1| predicted protein [Populus trichocarpa] gi|222871091|gb|EEF08222.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297809523|ref|XP_002872645.1| aminomethyltransferase [Arabidopsis lyrata subsp. lyrata] gi|297318482|gb|EFH48904.1| aminomethyltransferase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|296082848|emb|CBI22149.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|79470337|ref|NP_192950.2| glycine cleavage T-protein family protein [Arabidopsis thaliana] gi|22655070|gb|AAM98126.1| putative protein [Arabidopsis thaliana] gi|30725630|gb|AAP37837.1| At4g12130 [Arabidopsis thaliana] gi|332657699|gb|AEE83099.1| glycine cleavage T-protein family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449494308|ref|XP_004159509.1| PREDICTED: LOW QUALITY PROTEIN: putative transferase CAF17 homolog, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449460429|ref|XP_004147948.1| PREDICTED: putative transferase CAF17 homolog, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|4586118|emb|CAB40954.1| putative protein [Arabidopsis thaliana] gi|7267914|emb|CAB78256.1| putative protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query407
TAIR|locus:2118041393 AT4G12130 [Arabidopsis thalian 0.407 0.422 0.710 7.5e-120
ZFIN|ZDB-GENE-060929-712354 iba57 "IBA57, iron-sulfur clus 0.353 0.406 0.456 1.2e-38
UNIPROTKB|E1BC94358 IBA57 "Uncharacterized protein 0.353 0.402 0.477 1.3e-36
UNIPROTKB|Q5T440356 IBA57 "Putative transferase CA 0.353 0.404 0.457 1.4e-36
RGD|2323418358 LOC100363222 "hypothetical pro 0.336 0.382 0.441 7.2e-36
MGI|MGI:3041174358 Iba57 "IBA57, iron-sulfur clus 0.356 0.405 0.437 3.9e-35
UNIPROTKB|F1S5S1354 IBA57 "Uncharacterized protein 0.353 0.406 0.470 8.1e-35
FB|FBgn0037610348 CG8043 [Drosophila melanogaste 0.341 0.399 0.417 5.8e-34
UNIPROTKB|F1NMF9332 IBA57 "Uncharacterized protein 0.390 0.478 0.408 6.2e-33
WB|WBGene00009563280 F39H2.3 [Caenorhabditis elegan 0.312 0.453 0.426 5.9e-27
TAIR|locus:2118041 AT4G12130 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 639 (230.0 bits), Expect = 7.5e-120, Sum P(2) = 7.5e-120
 Identities = 118/166 (71%), Positives = 138/166 (83%)

Query:   242 PLVEADKETDEMNYLLCRLEQGVAEGSTEIPKGEAMPLEYNLAGLNAISFDKGCYVGQEL 301
             PLVEADKETDE NYLL RLE GVAEGS EIPKGEA+PLEYN  GLNAISFDKGCYVGQEL
Sbjct:   228 PLVEADKETDESNYLLWRLEHGVAEGSAEIPKGEAIPLEYNFVGLNAISFDKGCYVGQEL 287

Query:   302 IARTHHRGVIRKRLLPLRFLDNRGNELEQKVAPGSEVIDAESGKKAGKVTTALGCRGLGV 361
             IARTHHRGVIRKRL+PLRF+D+ G EL QK+A G+EV+++ +GKK G V+TALG RG+GV
Sbjct:   288 IARTHHRGVIRKRLIPLRFIDSNGKELNQKIAAGAEVVESGTGKKMGTVSTALGSRGMGV 347

Query:   362 LRLEEVLKESGALTIQGQEDVRVEAIRPNWWPAEWLQENQQHSVAA 407
             +R+EE  K S  L ++  E+V+VEAI+P WWPAEW Q+NQ    AA
Sbjct:   348 MRVEEAFKPSAELAVKDSEEVKVEAIKPTWWPAEWFQQNQSGVAAA 393
GO:0004047 "aminomethyltransferase activity" evidence=IEA;ISS
GO:0005739 "mitochondrion" evidence=ISM
GO:0005759 "mitochondrial matrix" evidence=IDA
GO:0016226 "iron-sulfur cluster assembly" evidence=IGI
GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA
ZFIN|ZDB-GENE-060929-712 iba57 "IBA57, iron-sulfur cluster assembly homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1BC94 IBA57 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q5T440 IBA57 "Putative transferase CAF17, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|2323418 LOC100363222 "hypothetical protein LOC100363222" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:3041174 Iba57 "IBA57, iron-sulfur cluster assembly homolog (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1S5S1 IBA57 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
FB|FBgn0037610 CG8043 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1NMF9 IBA57 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
WB|WBGene00009563 F39H2.3 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query407
COG0354305 COG0354, COG0354, Predicted aminomethyltransferase 1e-39
TIGR0331767 TIGR03317, ygfZ_signature, folate-binding protein 1e-26
pfam01571212 pfam01571, GCV_T, Aminomethyltransferase folate-bi 1e-11
pfam0866995 pfam08669, GCV_T_C, Glycine cleavage T-protein C-t 1e-08
PRK09559327 PRK09559, PRK09559, putative global regulator; Rev 7e-07
>gnl|CDD|223431 COG0354, COG0354, Predicted aminomethyltransferase related to GcvT [General function prediction only] Back     alignment and domain information 
 Score =  143 bits (362), Expect = 1e-39
 Identities = 93/342 (27%), Positives = 130/342 (38%), Gaps = 76/342 (22%)

Query: 37  LKSRSVVRFSGPDTIKYLQGLLTNDVRKFGEPAGKREKTSTLTTPNLPYESASPVYAALL 96
           L  R+++R SG D  K+LQG LTNDV    E                         AALL
Sbjct: 19  LSDRALIRVSGADAEKFLQGQLTNDVSALAEGQ--------------------STLAALL 58

Query: 97  TPQGKFLYDLFLYAPPPPEEKLDRTGWSGPSSGSHDRSVEVFADVDGSVLDELLHTFKKY 156
           TPQG+ L+D  LY                           ++ D D SVL+ LL   KKY
Sbjct: 59  TPQGRVLFDFRLYRRGD----------------------GLYLDTDKSVLEALLKRLKKY 96

Query: 157 RLRSKVEIENVAEDFSCWQRFGGKLSENSSLQKNQRLPQLAGVLALIVLACRLHMVMMLD 216
            LRSKV I     D       G + +E  ++      P L                    
Sbjct: 97  ALRSKVTIAP--SDLVLIGVAGEEAAEALAVD----FPALPKQWRAAG------------ 138

Query: 217 GNGLRILDWIVLDLGESSNLVEYVTPLVEADKETDEMNYLLCRLEQGVAEGSTEIPKGEA 276
               R L  + +               +    E     +L  R+  G+  G  +    + 
Sbjct: 139 ----RFLLDLPVPRLLQ----LVPKLALPQALEASLDQWLALRIRAGI-PGIDDATSEDF 189

Query: 277 MPLEYNLAGLNAISFDKGCYVGQELIARTHHRGVIRKRLLPLRFLDNRGNELEQKVAPGS 336
           +P E NL  L  ISF KGCYVGQE +AR  +RG  ++RL+ L  LD            G 
Sbjct: 190 IPQEVNLDALGGISFKKGCYVGQETVARAKYRGTNKRRLVLLA-LDA------SLPEAGE 242

Query: 337 EVIDAESGKKAGKVTTALGCRGLGVLRLEEVLKESGALTIQG 378
           E++        G V +A+G   + ++RL+ VL    A+ + G
Sbjct: 243 EILAGGEEVGLGTVLSAVGLGPVALIRLKVVLDNGLAIDVGG 284

Length = 305
>gnl|CDD|234167 TIGR03317, ygfZ_signature, folate-binding protein YgfZ Back     alignment and domain information
>gnl|CDD|216578 pfam01571, GCV_T, Aminomethyltransferase folate-binding domain Back     alignment and domain information
>gnl|CDD|219963 pfam08669, GCV_T_C, Glycine cleavage T-protein C-terminal barrel domain Back     alignment and domain information
>gnl|CDD|236567 PRK09559, PRK09559, putative global regulator; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 407
KOG2929348 consensus Transcription factor, component of CCR4 100.0
TIGR00528361 gcvT glycine cleavage system T protein. Eukaryotic 100.0
PRK13579370 gcvT glycine cleavage system aminomethyltransferas 100.0
PRK00389359 gcvT glycine cleavage system aminomethyltransferas 100.0
PLN02319404 aminomethyltransferase 100.0
PRK09559327 putative global regulator; Reviewed 100.0
TIGR01372985 soxA sarcosine oxidase, alpha subunit family, hete 100.0
COG0404379 GcvT Glycine cleavage system T protein (aminomethy 100.0
PRK12486368 dmdA putative dimethyl sulfoniopropionate demethyl 100.0
COG0354305 Predicted aminomethyltransferase related to GcvT [ 100.0
KOG2770401 consensus Aminomethyl transferase [Amino acid tran 100.0
KOG2844856 consensus Dimethylglycine dehydrogenase precursor 100.0
PF01571211 GCV_T: Aminomethyltransferase folate-binding domai 100.0
TIGR0331767 ygfZ_signature folate-binding protein YgfZ. YgfZ i 99.83
PF0866995 GCV_T_C: Glycine cleavage T-protein C-terminal bar 99.51
TIGR01375152 soxG sarcosine oxidase, gamma subunit family, hete 98.29
TIGR01375152 soxG sarcosine oxidase, gamma subunit family, hete 95.3
PF04268147 SoxG: Sarcosine oxidase, gamma subunit family ; In 94.04
PF10396114 TrmE_N: GTP-binding protein TrmE N-terminus; Inter 93.88
COG0486 454 ThdF Predicted GTPase [General function prediction 88.83
>KOG2929 consensus Transcription factor, component of CCR4 transcriptional complex [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=4.9e-55  Score=415.65  Aligned_cols=341  Identities=40%  Similarity=0.607  Sum_probs=261.8

Q ss_pred             cCCCCcCCCCCcCchhhhhhhccCCCCCCCeeeecCCceEEEEECCChhhHhhhhhhccccCCCCCCCCcccccccCCCC
Q 042318            3 RIKPSLRSPKSIPSIFRALHNQNDRSNAGPLASQLKSRSVVRFSGPDTIKYLQGLLTNDVRKFGEPAGKREKTSTLTTPN   82 (407)
Q Consensus         3 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~dls~~~~i~V~G~Da~~fLq~l~T~dv~~l~~~~~~~~~~~~~~~~~   82 (407)
                      ..++..++-|+|=+.+.....+.++   +..++.|++|++|+|+|+|+++|||||+||||.+-.            |+.+
T Consensus         4 ~~~~~~~~~~t~~sp~~~~~~~~~~---~~~~~~L~~RsliRv~GpDtvkFLqGL~TNdv~~~~------------p~~~   68 (348)
T KOG2929|consen    4 AVRSRSRNFFTMRSPDASPSGQPDA---NFNLSLLESRSLIRVRGPDTVKFLQGLLTNDVTRHF------------PGIQ   68 (348)
T ss_pred             chhhhheeeeeeecCCccccccccc---cceeeecCCceEEEEeCccHHHHHhhhhcccccccC------------cccc
Confidence            3456666677776666665556554   566899999999999999999999999999998752            5566


Q ss_pred             CCCCCCccccccccCCCCcEEEEEEEeCCCCCCccccCCCCCCCCCCCCCCCceEEEEecCcchHHHHHHHHhcccCCCc
Q 042318           83 LPYESASPVYAALLTPQGKFLYDLFLYAPPPPEEKLDRTGWSGPSSGSHDRSVEVFADVDGSVLDELLHTFKKYRLRSKV  162 (407)
Q Consensus        83 ~~~~~~~~~yt~~Ln~kGrv~~D~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~L~~~~~~~kV  162 (407)
                      .+++++.+.|++|||.|||+++|+++|+.+.+.      +           +++++|+|+++...++++||++|+++.||
T Consensus        69 ~a~~t~~~~Ya~fLN~qGR~LyD~iLY~~~~~~------~-----------~~~~llE~d~~~~~~~~khl~~yrLr~kv  131 (348)
T KOG2929|consen   69 GAPITRNGLYAAFLNTQGRLLYDTILYPTPVPV------S-----------EPELLLECDGSVVGDFLKHLQKYRLRRKV  131 (348)
T ss_pred             cCCCCCchhhhhhhccCccEEEEEEEecCCCCC------C-----------CCceEEEecCccchHHHHHHHHhhhhhcc
Confidence            788888899999999999999999999986321      1           47999999999999999999999999999


Q ss_pred             EEeecCCceeEEEEec-CCccccchhhcccccccchhHHHHHHHhhhhhhhhhcCCCceEEEecCccc-cCccccccccc
Q 042318          163 EIENVAEDFSCWQRFG-GKLSENSSLQKNQRLPQLAGVLALIVLACRLHMVMMLDGNGLRILDWIVLD-LGESSNLVEYV  240 (407)
Q Consensus       163 ~i~~~s~~~~~~~~~G-p~a~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~G~~~~~~~~~  240 (407)
                      +|+.+++++..|.+.- |+...            ...+    |.....         ....-+|||.+ .||+.+-.+-.
T Consensus       132 ~v~~id~el~tw~v~~~p~~~~------------d~~~----~~~~~~---------~~~~~rdpr~s~~~~~~l~~~f~  186 (348)
T KOG2929|consen  132 EVEKIDHELKTWKVEVLPKNSI------------DANV----FEENVL---------NVLYNRDPRFSGMGWRLLPQDFA  186 (348)
T ss_pred             eeeeCchhhceeeeeecccccc------------chhh----cchhhh---------hhhhccCCccccccccccceeec
Confidence            9999988888888663 11110            0000    000000         01122688887 77775532222


Q ss_pred             ccccccccccChHHHHHHHHHhCCccCCCCCCCCCCCccccCcccCCccccCCCCCcchhHHHHhhhcCccCceEEeEEE
Q 042318          241 TPLVEADKETDEMNYLLCRLEQGVAEGSTEIPKGEAMPLEYNLAGLNAISFDKGCYVGQELIARTHHRGVIRKRLLPLRF  320 (407)
Q Consensus       241 ~~l~~~~~~~g~~~~~~lRiE~G~~~~g~d~~~~~~~P~E~nl~~l~aIsf~KGCYvGQE~vaR~~~~G~~rKrLv~l~~  320 (407)
                      ..+.+.....+...|+.+|+++|++++.+|++++..+|+|+|+|++|+|||+||||+|||++||+|++|.+||||+++++
T Consensus       187 ~~~~~~~~~~d~~~Y~~~Ry~~Gv~EG~~el~pg~~lPLE~N~d~lngISf~KGCYVGQELTARThhtGViRKRl~P~r~  266 (348)
T KOG2929|consen  187 VPTSEQVSEGDESDYRLLRYQQGVAEGSQELIPGTLLPLESNFDFLNGISFDKGCYVGQELTARTHHTGVIRKRLFPFRL  266 (348)
T ss_pred             CcccccccccchhHHHHHHHHcCcccchhhcCcccccceeccccccccccccCcceechhheehhhhcceeeeeeeeEEe
Confidence            33334445556677999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCcccccc-CCCCCceeeCCCCeeeeEEEeccCceEEEEEEehhhhcCCCcEEEecCceeEEEEeCCCCCCccchhh
Q 042318          321 LDNRGNELEQK-VAPGSEVIDAESGKKAGKVTTALGCRGLGVLRLEEVLKESGALTIQGQEDVRVEAIRPNWWPAEWLQE  399 (407)
Q Consensus       321 ~~~~g~~~~~~-~~~g~~v~~~~~g~~vG~vtS~~~~igLAlvr~~~~~~~~~~l~v~~~~~~~v~~~~p~~~~~~~~~~  399 (407)
                      .+.++.++... +.++..|. ...|++||+|.++.+..|||+++.+...+.-..+.++| +...+++.+|.||| +|..-
T Consensus       267 ~~~e~~p~~~~~~~~~~~v~-~~~g~kvG~~~~~~g~~glgllr~e~~~~~~~~l~~~g-~~i~i~~~~p~W~p-~~~~~  343 (348)
T KOG2929|consen  267 DLAENEPLLVGFTNAPPEVE-KKKGRKVGRVISGEGLRGLGLLRLEKFKAQFYKLTTKG-ENIKIKPQKPEWWP-DWSNG  343 (348)
T ss_pred             cccCCCccccCCCCCcccee-cccCceeeeeeccCcceeeeeeehhhhhccchhhhccC-ccceeccCCCcccc-cccCC
Confidence            65444333222 12333333 35799999999999999999999999843323456665 56889999999986 57777


Q ss_pred             hhhh
Q 042318          400 NQQH  403 (407)
Q Consensus       400 ~~~~  403 (407)
                      ++||
T Consensus       344 ~~~~  347 (348)
T KOG2929|consen  344 NGPH  347 (348)
T ss_pred             CCCC
Confidence            7766

>TIGR00528 gcvT glycine cleavage system T protein Back     alignment and domain information
>PRK13579 gcvT glycine cleavage system aminomethyltransferase T; Provisional Back     alignment and domain information
>PRK00389 gcvT glycine cleavage system aminomethyltransferase T; Reviewed Back     alignment and domain information
>PLN02319 aminomethyltransferase Back     alignment and domain information
>PRK09559 putative global regulator; Reviewed Back     alignment and domain information
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form Back     alignment and domain information
>COG0404 GcvT Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism] Back     alignment and domain information
>PRK12486 dmdA putative dimethyl sulfoniopropionate demethylase; Reviewed Back     alignment and domain information
>COG0354 Predicted aminomethyltransferase related to GcvT [General function prediction only] Back     alignment and domain information
>KOG2770 consensus Aminomethyl transferase [Amino acid transport and metabolism] Back     alignment and domain information
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism] Back     alignment and domain information
>PF01571 GCV_T: Aminomethyltransferase folate-binding domain; InterPro: IPR006222 This is a family of glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes Back     alignment and domain information
>TIGR03317 ygfZ_signature folate-binding protein YgfZ Back     alignment and domain information
>PF08669 GCV_T_C: Glycine cleavage T-protein C-terminal barrel domain; InterPro: IPR013977 This entry shows glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes Back     alignment and domain information
>TIGR01375 soxG sarcosine oxidase, gamma subunit family, heterotetrameric form Back     alignment and domain information
>TIGR01375 soxG sarcosine oxidase, gamma subunit family, heterotetrameric form Back     alignment and domain information
>PF04268 SoxG: Sarcosine oxidase, gamma subunit family ; InterPro: IPR007375 Sarcosine oxidase is a hetero-tetrameric enzyme that contains both covalently bound FMN and non-covalently bound FAD and NAD+ Back     alignment and domain information
>PF10396 TrmE_N: GTP-binding protein TrmE N-terminus; InterPro: IPR018948 This family represents the shorter, B, chain of the homo-dimeric structure which is a guanine nucleotide-binding protein that binds and hydrolyses GTP Back     alignment and domain information
>COG0486 ThdF Predicted GTPase [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query407
1vly_A338 Crystal Structure Of A Putative Aminomethyltransfer 3e-05
1nrk_A328 Ygfz Protein Length = 328 3e-05
3ttg_A355 Crystal Structure Of Putative Aminomethyltransferas 4e-04
>pdb|1VLY|A Chain A, Crystal Structure Of A Putative Aminomethyltransferase (Ygfz) From Escherichia Coli At 1.30 A Resolution Length = 338 Back     alignment and structure 
Iteration: 1

 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 25/42 (59%)
Query: 274 GEAMPLEYNLAGLNAISFDKGCYVGQELIARTHHRGVIRKRL 315
           G+ +P   NL  L  ISF KGCY GQE +AR   RG  ++ L
Sbjct: 219 GQFIPQATNLQALGGISFKKGCYTGQEXVARAKFRGANKRAL 260
>pdb|1NRK|A Chain A, Ygfz Protein Length = 328 Back     alignment and structure
>pdb|3TTG|A Chain A, Crystal Structure Of Putative Aminomethyltransferase From Leptospirillum Rubarum Length = 355 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query407
1vly_A338 SPOT PR51, unknown protein from 2D-PAGE; structura 2e-58
3ttg_A355 Putative aminomethyltransferase; structural genomi 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>1vly_A SPOT PR51, unknown protein from 2D-PAGE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.30A {Escherichia coli} SCOP: b.44.2.1 d.250.1.1 PDB: 1nrk_A Length = 338 Back     alignment and structure
 Score =  192 bits (491), Expect = 2e-58
 Identities = 72/364 (19%), Positives = 115/364 (31%), Gaps = 65/364 (17%)

Query: 27  RSNAGPLA-SQLKSRSVVRFSGPDTIKYLQGLLTNDVRKFGEPAGKREKTSTLTTPNLPY 85
            S   PL    L   ++   +G D+ KY+QG +T DV +  E                  
Sbjct: 25  ASARLPLTLMTLDDWALATITGADSEKYMQGQVTADVSQMAEDQH--------------- 69

Query: 86  ESASPVYAALLTPQGKFLYDLFLYAPPPPEEKLDRTGWSGPSSGSHDRSVEVFADVDGSV 145
                + AA    +GK   +L L+                                  SV
Sbjct: 70  -----LLAAHCDAKGKMWSNLRLFRDGD----------------------GFAWIERRSV 102

Query: 146 LDELLHTFKKYRLRSKVEIENVAEDFSCWQRFGGKLSENSSLQKNQRLPQLAGVLALIVL 205
            +  L   KKY + SKV I    E         G  +  +       LP     +     
Sbjct: 103 REPQLTELKKYAVFSKVTIAPDDERVLLG--VAGFQARAALANLFSELPSKEKQVVKEGA 160

Query: 206 ACRLHMVMMLDGNGLRILDWIVLDLGESSNLVEYVTPLVEADKETDEMNYLLCRLEQGVA 265
              L      +    R    IV D   ++ L +    L    +  +   +L   +E G  
Sbjct: 161 TTLLW----FEHPAER--FLIVTDEATANMLTD---KLRGEAELNNSQQWLALNIEAGFP 211

Query: 266 EGSTEIPKGEAMPLEYNLAGLNAISFDKGCYVGQELIARTHHRGVIRKRLLPLRFLDNRG 325
                   G+ +P   NL  L  ISF KGCY GQE++AR   RG  ++ L  L       
Sbjct: 212 VIDAANS-GQFIPQATNLQALGGISFKKGCYTGQEMVARAKFRGANKRALWLLAG----- 265

Query: 326 NELEQKVAPGSEVI--DAESGKKAGKVTTALGCRGLGVLRLEEVLK--ESGALTIQGQED 381
               +    G ++     E+ ++ G V  A+      V+    +    E  ++     + 
Sbjct: 266 -SASRLPEAGEDLELKMGENWRRTGTVLAAVKLEDGQVVVQVVMNNDMEPDSIFRVRDDA 324

Query: 382 VRVE 385
             + 
Sbjct: 325 NTLH 328
>3ttg_A Putative aminomethyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Leptospirillum rubarum} Length = 355 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query407
1yx2_A365 Aminomethyltransferase; glycine cleavage system T 100.0
3ttg_A355 Putative aminomethyltransferase; structural genomi 100.0
1wos_A364 Aminomethyltransferase; T-protein; 1.84A {Thermoto 100.0
1vlo_A381 Aminomethyltransferase; NP417381, tetrahydrofolat 100.0
3gir_A393 Aminomethyltransferase; glycine cleavage system, a 100.0
1wsr_A375 Aminomethyltransferase; glycine-cleavage sytem; 2. 100.0
1v5v_A401 Aminomethyltransferase; glycine-cleavage sytem, st 100.0
1vly_A338 SPOT PR51, unknown protein from 2D-PAGE; structura 100.0
3tfi_A369 GCVT-like aminomethyltransferase protein; demethyl 100.0
1pj5_A830 N,N-dimethylglycine oxidase; channelling, FAD bind 100.0
2gag_A965 Heterotetrameric sarcosine oxidase alpha-subunit; 100.0
2gag_C210 Heterotetrameric sarcosine oxidase gamma-subunit; 99.53
1x31_C206 Sarcosine oxidase gamma subunit; heterotetrameric 99.52
2gag_C210 Heterotetrameric sarcosine oxidase gamma-subunit; 94.71
1x31_C206 Sarcosine oxidase gamma subunit; heterotetrameric 94.42
3geh_A 462 MNME, tRNA modification GTPase MNME; G protein, U3 81.53
>1yx2_A Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis} Back     alignment and structure
Probab=100.00  E-value=5.6e-57  Score=453.43  Aligned_cols=318  Identities=19%  Similarity=0.256  Sum_probs=261.1

Q ss_pred             CCcCchhhhhhhccCCCCCCCeeeecCCceEEEEECCChhhHhhhhhhccccCCCCCCCCcccccccCCCCCCCCCCccc
Q 042318           12 KSIPSIFRALHNQNDRSNAGPLASQLKSRSVVRFSGPDTIKYLQGLLTNDVRKFGEPAGKREKTSTLTTPNLPYESASPV   91 (407)
Q Consensus        12 ~~~p~~~~~~~~~~~~~~~~~~~~dls~~~~i~V~G~Da~~fLq~l~T~dv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (407)
                      ++||.+|.+...||.++|++++++|+|++++|+|+|+||.+|||+++||||.++.+++                    +.
T Consensus        27 ~~~p~~y~~~~~E~~a~r~~~gl~dls~~~~i~v~G~da~~fLq~l~t~dv~~l~~g~--------------------~~   86 (365)
T 1yx2_A           27 WELPVQFSSIKKEHEAVRTAAGLFDVSHMGEVEVSGNDSLSFLQRLMTNDVSALTPGR--------------------AQ   86 (365)
T ss_dssp             EEEEEESSCHHHHHHHHHHSEEEEECTTSEEEEEESTTHHHHHHHHBSSCGGGCCTTB--------------------EE
T ss_pred             EEhhhhcCCHHHHHHHHHhCcEEEECCCeEEEEEECCCHHHHHHHhcccccccCCCCC--------------------EE
Confidence            5699999999999999999999999999999999999999999999999999997766                    69


Q ss_pred             cccccCCCCcEEEEEEEeCCCCCCccccCCCCCCCCCCCCCCCceEEEEecCcchHHHHHHHHhcccCCCcEEeecCCce
Q 042318           92 YAALLTPQGKFLYDLFLYAPPPPEEKLDRTGWSGPSSGSHDRSVEVFADVDGSVLDELLHTFKKYRLRSKVEIENVAEDF  171 (407)
Q Consensus        92 yt~~Ln~kGrv~~D~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~L~~~~~~~kV~i~~~s~~~  171 (407)
                      |++|||++|||++|++||+++                     +++|||+++++..+++++||++|.. .||+|+++++++
T Consensus        87 y~~~ln~~G~i~~d~~v~r~~---------------------~d~~ll~~~a~~~~~~~~~L~~~~~-~~V~i~d~s~~~  144 (365)
T 1yx2_A           87 YTAMCYPDGGTVDDLLIYQKG---------------------ENRYLLVINASNIDKDLAWMKEHAA-GDVQIDNQSDQI  144 (365)
T ss_dssp             EEEEECTTSCEEEEEEEEEEE---------------------TTEEEEEECGGGHHHHHHHHHHTCC-SSCEEEECTTTE
T ss_pred             EEEEECCCCeEEEEEEEEEEe---------------------CCEEEEEECcccHHHHHHHHHhhcc-CCeEEEECcCCE
Confidence            999999999999999999984                     4789999999999999999999988 899999999999


Q ss_pred             eEEEEecCCccccchhhcccccccchhHHHHHHHhhh-hhhhhhcCCCceEEEecCccc-cCccccc-ccccccccc---
Q 042318          172 SCWQRFGGKLSENSSLQKNQRLPQLAGVLALIVLACR-LHMVMMLDGNGLRILDWIVLD-LGESSNL-VEYVTPLVE---  245 (407)
Q Consensus       172 ~~~~~~Gp~a~~~l~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~r~~-~G~~~~~-~~~~~~l~~---  245 (407)
                      ++++++||++.++++.+...++...      .|.... .   ...++..+.+.+..... .||++++ .+....+|+   
T Consensus       145 ~~lal~Gp~a~~~L~~l~~~dl~~~------~~~~~~~~---~~~~g~~~~i~R~g~tge~G~el~~~~~~a~~l~~~L~  215 (365)
T 1yx2_A          145 ALLAVQGPKAEAILKNLTDADVSAL------KPFAFIDE---ADISGRKALISRTGYTGEDGYEIYCRSDDAMHIWKKII  215 (365)
T ss_dssp             EEEEEESTTHHHHHHTTBSSCGGGC------CTTBEEEE---EEETTEEEEEESCCSSSSSEEEEEEEGGGHHHHHHHHH
T ss_pred             EEEEEECcCHHHHHHHhhCCChhhC------CcceeEEE---EEECCeEEEEEeCcccCCCEEEEEEcHHHHHHHHHHHH
Confidence            9999999999988765543222211      111100 0   01122234444444445 7888887 444444433   


Q ss_pred             -c-----ccccChHHHHHHHHHhCCccCCCCCCCCCCCccccCcccCCccccCCCC-CcchhHHHHhhhcCccCceEEeE
Q 042318          246 -A-----DKETDEMNYLLCRLEQGVAEGSTEIPKGEAMPLEYNLAGLNAISFDKGC-YVGQELIARTHHRGVIRKRLLPL  318 (407)
Q Consensus       246 -~-----~~~~g~~~~~~lRiE~G~~~~g~d~~~~~~~P~E~nl~~l~aIsf~KGC-YvGQE~vaR~~~~G~~rKrLv~l  318 (407)
                       .     ..++|..+|+++|||+|+|.+++|+. ++++|+|+||+|  +|||+||| |+|||+++|++++| ++|||+++
T Consensus       216 ~ag~~~g~~~~g~~a~~~lRieaG~p~~g~d~~-~~~~P~e~~l~~--~V~~~Kgc~yiGqe~lar~~~~g-~~rrlv~l  291 (365)
T 1yx2_A          216 DAGDAYGLIPCGLGARDTLRFEANIPLYGQELT-RDITPIEAGIGF--AVKHKKESDFFGKSVLSEQKENG-AKRKLVGL  291 (365)
T ss_dssp             HHHGGGTEEEECHHHHHHHHHHTTCCCBTTTBS-TTCCTTTTTCGG--GCCTTCSSCCTTHHHHHHHHHHC-CSEEEEEE
T ss_pred             hcchhcCceeCCHHHHHHhHHhcCCCcCccccC-CCCCHHHCCccc--eecCCCCCCCcCHHHHHHHHhcC-CCeEEEEE
Confidence             2     36889999999999999999999995 689999999998  79999998 99999999999999 58999999


Q ss_pred             EEecCCCccccccCCCCCceeeCCCCeeeeEEEecc------CceEEEEEEehhhhcCCCcEEEec-CceeEEEEeCCCC
Q 042318          319 RFLDNRGNELEQKVAPGSEVIDAESGKKAGKVTTAL------GCRGLGVLRLEEVLKESGALTIQG-QEDVRVEAIRPNW  391 (407)
Q Consensus       319 ~~~~~~g~~~~~~~~~g~~v~~~~~g~~vG~vtS~~------~~igLAlvr~~~~~~~~~~l~v~~-~~~~~v~~~~p~~  391 (407)
                      ++..      ...+.+|++|+  .+|+.||+|||++      .++|||||+.+++ ..|+++.|.- ++.+.+++.++||
T Consensus       292 ~~~~------~~~~~~g~~v~--~~g~~vG~vtS~~~sp~~~~~iala~v~~~~~-~~g~~~~v~~~g~~~~a~v~~~Pf  362 (365)
T 1yx2_A          292 EMIE------KGIPRHGYEVF--QNGKSVGKVTTGTQSPTLGKNVGLALIDSETS-EIGTVVDVEIRKKLVKAKVVKTPF  362 (365)
T ss_dssp             EESS------SCCCCTTCEEE--ETTEEEEEEEEEEEETTTTEEEEEEEEEGGGC-STTCEEEEEETTEEEEEEEECCCC
T ss_pred             EECC------CcCCCCCCEEE--ECCeeEEEEEeccccCCCCceEEEEEEChHHc-CCCCEEEEEECCEEEEEEEEcCCC
Confidence            9753      23578899999  4689999999986      2699999999887 4788877652 3568999999999


Q ss_pred             CC
Q 042318          392 WP  393 (407)
Q Consensus       392 ~~  393 (407)
                      ++
T Consensus       363 ~~  364 (365)
T 1yx2_A          363 YK  364 (365)
T ss_dssp             --
T ss_pred             CC
Confidence            75
>3ttg_A Putative aminomethyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Leptospirillum rubarum} Back     alignment and structure
>1wos_A Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} SCOP: b.44.2.1 d.250.1.1 PDB: 1woo_A* 1wop_A* 1wor_A Back     alignment and structure
>1vlo_A Aminomethyltransferase; NP417381, tetrahydrofolat dependent) of glycine cleavage system, structural genomics, protein structure initiative; HET: MSE; 1.70A {Escherichia coli K12} SCOP: b.44.2.1 d.250.1.1 PDB: 3a8j_A* 3a8i_A* 3a8k_A* Back     alignment and structure
>3gir_A Aminomethyltransferase; glycine cleavage system, aminotransferase, structural genomics; 1.60A {Bartonella henselae} Back     alignment and structure
>1wsr_A Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo sapiens} PDB: 1wsv_A* Back     alignment and structure
>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} SCOP: b.44.2.1 d.250.1.1 Back     alignment and structure
>1vly_A SPOT PR51, unknown protein from 2D-PAGE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.30A {Escherichia coli} SCOP: b.44.2.1 d.250.1.1 PDB: 1nrk_A Back     alignment and structure
>3tfi_A GCVT-like aminomethyltransferase protein; demethylase, THF; 1.60A {Candidatus pelagibacter ubique} PDB: 3tfh_A 3tfj_A* Back     alignment and structure
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* Back     alignment and structure
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* Back     alignment and structure
>2gag_C Heterotetrameric sarcosine oxidase gamma-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_C* Back     alignment and structure
>1x31_C Sarcosine oxidase gamma subunit; heterotetrameric sarcosine oxidase, flavoenzyme, oxidoreduct; HET: FAD NAD FMN; 2.15A {Corynebacterium SP} PDB: 1vrq_C* 3ad7_C* 3ad8_C* 3ad9_C* 3ada_C* Back     alignment and structure
>2gag_C Heterotetrameric sarcosine oxidase gamma-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_C* Back     alignment and structure
>1x31_C Sarcosine oxidase gamma subunit; heterotetrameric sarcosine oxidase, flavoenzyme, oxidoreduct; HET: FAD NAD FMN; 2.15A {Corynebacterium SP} PDB: 1vrq_C* 3ad7_C* 3ad8_C* 3ad9_C* 3ada_C* Back     alignment and structure
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 407
d1vlya2241 d.250.1.1 (A:3-243) Hypothetical protein YgfZ, N-t 4e-25
>d1vlya2 d.250.1.1 (A:3-243) Hypothetical protein YgfZ, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 241 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Folate-binding domain
superfamily: Folate-binding domain
family: Aminomethyltransferase folate-binding domain
domain: Hypothetical protein YgfZ, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  100 bits (249), Expect = 4e-25
 Identities = 54/273 (19%), Positives = 85/273 (31%), Gaps = 54/273 (19%)

Query: 37  LKSRSVVRFSGPDTIKYLQGLLTNDVRKFGEPAGKREKTSTLTTPNLPYESASPVYAALL 96
           L   ++   +G D+ KY+QG +T DV +  E                         AA  
Sbjct: 22  LDDWALATITGADSEKYMQGQVTADVSQMAEDQHL--------------------LAAHC 61

Query: 97  TPQGKFLYDLFLYAPPPPEEKLDRTGWSGPSSGSHDRSVEVFADVDGSVLDELLHTFKKY 156
             +GK   +L L+        ++R                          +  L   KKY
Sbjct: 62  DAKGKMWSNLRLFRDGDGFAWIERRSVR----------------------EPQLTELKKY 99

Query: 157 RLRSKVEIENVAEDFSCWQRFGGKLSENSSLQKNQRLPQLAGVLALIVLACRLHMVMMLD 216
            + SKV I    E           ++   +      L          V+      ++  +
Sbjct: 100 AVFSKVTIAPDDERVLLG------VAGFQARAALANLFSELPSKEKQVVKEGATTLLWFE 153

Query: 217 GNGLRILDWIVLDLGESSNLVEYVTPLVEADKETDEMNYLLCRLEQGVAEGSTEIPKGEA 276
               R L        + +        L    +  +   +L   +E G          G+ 
Sbjct: 154 HPAERFLIVT-----DEATANMLTDKLRGEAELNNSQQWLALNIEAGFPVIDAAN-SGQF 207

Query: 277 MPLEYNLAGLNAISFDKGCYVGQELIARTHHRG 309
           +P   NL  L  ISF KGCY GQE++AR   RG
Sbjct: 208 IPQATNLQALGGISFKKGCYTGQEMVARAKFRG 240

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query407
d1vlya2241 Hypothetical protein YgfZ, N-terminal domain {Esch 100.0
d1wosa2278 Glycine cleavage system T protein, GcvT {Thermotog 100.0
d1vloa2274 Glycine cleavage system T protein, GcvT {Escherich 100.0
d1pj5a4315 N,N-dimethylglycine oxidase domain 3 {Arthrobacter 100.0
d1v5va2310 Glycine cleavage system T protein, GcvT {Pyrococcu 100.0
d1v5va189 Glycine cleavage system T protein, GcvT {Pyrococcu 98.81
d1pj5a188 N,N-dimethylglycine oxidase, C-terminal domain {Ar 98.71
d1wosa183 Glycine cleavage system T protein, GcvT {Thermotog 98.64
d1vloa190 Glycine cleavage system T protein, GcvT {Escherich 98.3
d1vlya182 Hypothetical protein YgfZ, C-terminal domain {Esch 96.44
d1xzpa3117 TrmE formyl-THF-binding domain {Thermotoga maritim 90.54
>d1vlya2 d.250.1.1 (A:3-243) Hypothetical protein YgfZ, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Folate-binding domain
superfamily: Folate-binding domain
family: Aminomethyltransferase folate-binding domain
domain: Hypothetical protein YgfZ, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.9e-46  Score=349.07  Aligned_cols=229  Identities=24%  Similarity=0.291  Sum_probs=178.2

Q ss_pred             hhccCCCCCCCeeeecCCceEEEEECCChhhHhhhhhhccccCCCCCCCCcccccccCCCCCCCCCCccccccccCCCCc
Q 042318           22 HNQNDRSNAGPLASQLKSRSVVRFSGPDTIKYLQGLLTNDVRKFGEPAGKREKTSTLTTPNLPYESASPVYAALLTPQGK  101 (407)
Q Consensus        22 ~~~~~~~~~~~~~~dls~~~~i~V~G~Da~~fLq~l~T~dv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~yt~~Ln~kGr  101 (407)
                      ..+..++|.+++++||+++++|+|+|+||.+|||+|+||||.++.+++                    ++||+|||+|||
T Consensus         7 ~~~~~~~~~~~~l~~L~~~~~i~v~G~Da~~fLq~l~T~di~~l~~g~--------------------~~~t~~ln~kGr   66 (241)
T d1vlya2           7 RQPTASARLPLTLMTLDDWALATITGADSEKYMQGQVTADVSQMAEDQ--------------------HLLAAHCDAKGK   66 (241)
T ss_dssp             CCCCCGGGCCSEEEECTTEEEEEEESTTHHHHHHTTBSSCGGGCCTTC--------------------EEEEEEECTTSC
T ss_pred             CCcCccccCCeeEEECCCceEEEEECCCHHHHHhHHhhhcccccCCCC--------------------EEeeeeecccCe
Confidence            345557788999999999999999999999999999999999998776                    599999999999


Q ss_pred             EEEEEEEeCCCCCCccccCCCCCCCCCCCCCCCceEEEEecCcchHHHHHHHHhcccCCCcEEeecCCceeEEEEecCCc
Q 042318          102 FLYDLFLYAPPPPEEKLDRTGWSGPSSGSHDRSVEVFADVDGSVLDELLHTFKKYRLRSKVEIENVAEDFSCWQRFGGKL  181 (407)
Q Consensus       102 v~~D~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~L~~~~~~~kV~i~~~s~~~~~~~~~Gp~a  181 (407)
                      |++|++|++.                      ++.|+|.++.+..+.+++||++|+++.+|+|++ ++++.+++++||++
T Consensus        67 i~~d~~i~~~----------------------~~~~~l~~~~~~~~~~~~~l~~~~~~~~v~i~~-~~~~~~~~l~gp~a  123 (241)
T d1vlya2          67 MWSNLRLFRD----------------------GDGFAWIERRSVREPQLTELKKYAVFSKVTIAP-DDERVLLGVAGFQA  123 (241)
T ss_dssp             EEEEEEEEEE----------------------TTEEEEEEEHHHHHHHHHHHHTTCSSSSCEEEE-ECSSEEEEEESTTH
T ss_pred             EEEEEEEeec----------------------cccceeehhhhhhHHHHHHHhhhcccceeeeec-chhheeeeecCccH
Confidence            9999999997                      378999999999999999999999999999988 46788999999999


Q ss_pred             cccchhhcccccccchhHHHHHHHhhhhhhhhhcCCCceEEEecCccccCccccc-c-ccc----ccccccccccChHHH
Q 042318          182 SENSSLQKNQRLPQLAGVLALIVLACRLHMVMMLDGNGLRILDWIVLDLGESSNL-V-EYV----TPLVEADKETDEMNY  255 (407)
Q Consensus       182 ~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~G~~~~~-~-~~~----~~l~~~~~~~g~~~~  255 (407)
                      .+.++.............             ... ..  ..........++..++ . ...    ..+.....+.+..+|
T Consensus       124 ~~~l~~~~~~~~~~~~~~-------------~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (241)
T d1vlya2         124 RAALANLFSELPSKEKQV-------------VKE-GA--TTLLWFEHPAERFLIVTDEATANMLTDKLRGEAELNNSQQW  187 (241)
T ss_dssp             HHHHHTTSSCCCBTTBCE-------------EEE-TT--EEEEEECSSSCEEEEEECHHHHHHHHHHHBTTBEEECHHHH
T ss_pred             HHHHHhccccccccccce-------------eee-ee--eeeeeccCCCcceeeeCCHHHHHHHHHHhhhhccccchhHH
Confidence            877654321110000000             000 00  0111111112222222 1 111    112233567899999


Q ss_pred             HHHHHHhCCccCCCCCCCCCCCccccCcccCCccccCCCCCcchhHHHHhhhcCc
Q 042318          256 LLCRLEQGVAEGSTEIPKGEAMPLEYNLAGLNAISFDKGCYVGQELIARTHHRGV  310 (407)
Q Consensus       256 ~~lRiE~G~~~~g~d~~~~~~~P~E~nl~~l~aIsf~KGCYvGQE~vaR~~~~G~  310 (407)
                      +.+|||+|+|.++.|+ .++++|+|+||+++++|||+||||+|||+|||+|++|.
T Consensus       188 ~~lRie~g~p~~~~e~-~~~~~P~E~gLd~~~~Vsf~KGCY~GQE~vAR~~~rG~  241 (241)
T d1vlya2         188 LALNIEAGFPVIDAAN-SGQFIPQATNLQALGGISFKKGCYTGQEMVARAKFRGA  241 (241)
T ss_dssp             HHHHHHHTCCCCCGGG-TTSCCGGGGTGGGTTCCCSSSCCCTTHHHHHHTTSTTS
T ss_pred             HHHHHHcCCcccCccC-CCCCcHHHcCchhccCCCCCCCCcCcHHHHHHHHhcCC
Confidence            9999999999999998 47899999999999999999999999999999999994
>d1wosa2 d.250.1.1 (A:1-278) Glycine cleavage system T protein, GcvT {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vloa2 d.250.1.1 (A:4-277) Glycine cleavage system T protein, GcvT {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pj5a4 d.250.1.1 (A:428-742) N,N-dimethylglycine oxidase domain 3 {Arthrobacter globiformis [TaxId: 1665]} Back     information, alignment and structure
>d1v5va2 d.250.1.1 (A:3-312) Glycine cleavage system T protein, GcvT {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1v5va1 b.44.2.1 (A:313-401) Glycine cleavage system T protein, GcvT {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1pj5a1 b.44.2.1 (A:743-830) N,N-dimethylglycine oxidase, C-terminal domain {Arthrobacter globiformis [TaxId: 1665]} Back     information, alignment and structure
>d1wosa1 b.44.2.1 (A:279-361) Glycine cleavage system T protein, GcvT {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vloa1 b.44.2.1 (A:278-367) Glycine cleavage system T protein, GcvT {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vlya1 b.44.2.1 (A:244-325) Hypothetical protein YgfZ, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xzpa3 d.250.1.2 (A:1-117) TrmE formyl-THF-binding domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure