Citrus Sinensis ID: 042324

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550----
FLLAIVSMEDASIGSAAGQEPVPGTPGIREVRSETNESGIFGFSEAGGGGIRKVGLRAEIDTSPPFGSVKEAVTRFGGSESWPPLYKLAEYHGVGEFDIKKVEEQAAELEKDLIVKELETLDVLEELGTTKKIVEELKLQLQKEALKCMTTPEIKEMNKEHQRNFVSNNNDQQQIMVGCSSPCPASSPDLILMELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRERLTSKFASAGVPTLGEELKQVREKQQIDGSGFKNCSNFSQGEQLKKLADASKAMLVNEQSNKACIKTAEMRWVAAKKMEEAAKAAEALALAEIKGLSSSSHEKPSGFLLPEPEGQFSPLSFKSQKAEEEAVAEVKHSKQALEEALNRVENANRKQLAAGEALIRWTPDYDTIKRTQPQPMYSPNRFKIIHPTDHYHPQKSPLNKISNPELVTDDQPKPVLRPTVSMRDILSRKQVQPEECVVRRQAEKHPAERQKVALSQMLQELREDLSFPKKTENIECDDDHQQKQFFAQRRKFGFIHISLPLTKQSKKKMQALNPM
ccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccHHHHHHHHHHccccHHHHcccHHHHHHHHHHccccccccccccccccccHHHHHcccccccEEEEccccccccHHHHHHcccc
cEEEEEEccccccccHcccccccccccEEEEccccccccccccccccccccEEEcEEEEEcccccHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccEEHHHHHHHHHcccccccccccccccccccccccHHHHHHHccccccccccHcccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccc
FLLAIVSMedasigsaagqepvpgtpgirevrsetnesgifgfseaggggirkvglraeidtsppfgsvKEAVTrfggseswpplyklaeyhgvgefdIKKVEEQAAELEKDLIVKELETLDVLEELGTTKKIVEELKLQLQKEALKCMTTPEIKEMNKEHQRnfvsnnndqqqimvgcsspcpasspdLILMELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRERLTSKfasagvptlGEELKQVREKqqidgsgfkncsnfsqgEQLKKLADASKAMLVNEQSNKACIKTAEMRWVAAKKMEEAAKAAEALALAEIKglsssshekpsgfllpepegqfsplsfksQKAEEEAVAEVKHSKQALEEALNRVENANRKQLAAGEALirwtpdydtikrtqpqpmyspnrfkiihptdhyhpqksplnkisnpelvtddqpkpvlrptvsmrdilsrkqvqpeECVVRRQAEKHPAERQKVALSQMLQELREdlsfpkkteniecdddHQQKQFFAQRRKFgfihislpltkqSKKKMQALNPM
FLLAIVSMedasigsaagqepvpgtpGIREVRSETNESgifgfseaggggIRKVGLRaeidtsppfgsVKEAVTRfggseswpPLYKLAEYHGVGEFDIKKVEEQAAELEKDLIVKELETLDVLEELGTTKKIVEELKLQLQKEALKCMTTPEIKEMNKEHQRNFVSNNNDQQQIMVGCSSPCPASSPDLILMELKQAKLNlgrtindlgviqtsveslnkrmkKEKRMLETTrerltskfasagvptlgEELKQVREKQQidgsgfkncsnfSQGEQLKKLADASKAMLVNEQSNKACIKTAEMRWVAAKKMEEAAKAAEALALAEIKGLSSSSHEKPSGFLLPEPEGQFSPLSFKSQKAEEEAVAEVKHSKQALEEALNRVENANRKQlaagealirwtpdydtikrtqpqpmySPNRFKIIHPTDHYHPQKSPLNKISNPELVTDDQPKPVLRPTvsmrdilsrkqvqpeecvvrrqaekhpaerqKVALSQMLQELREDLSFPKKTENIECDDDHQQKQFFAQRRKFGFIhislpltkqskkkmqalnpm
FLLAIVSMEDASIGSAAGQEPVPGTPGIREVRSETNesgifgfseaggggiRKVGLRAEIDTSPPFGSVKEAVTRFGGSESWPPLYKLAEYHGVGEFDIKKVEEQAAELEKDLIVKELETLDVLEELGTTKKIVeelklqlqkealkCMTTPEIKEMNKEHQRNFVSNNNDQQQIMVGCSSPCPASSPDLILMELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRERLTSKFASAGVPTLGEELKQVREKQQIDGSGFKNCSNFSQGEQLKKLADASKAMLVNEQSNKACIKTAEMRWVaakkmeeaakaaealalaeikGLSSSSHEKPSGFLLPEPEGQFSPLSFKSQKaeeeavaevKHSKQALEEALNRVENANRKQLAAGEALIRWTPDYDTIKRTQPQPMYSPNRFKIIHPTDHYHPQKSPLNKISNPELVTDDQPKPVLRPTVSMRDILSRKQVQPEECVVRRQAEKHPAERQKVALSQMLQELREDLSFPKKTENIECDDDHqqkqffaqrrkfgfIHISLPLTKQSKKKMQALNPM
***************************************IFGFSEAGGGGIRKVGLRAEID****FGSVKEAVTRFGGSESWPPLYKLAEYHGVGEFDIKKVEEQAAELEKDLIVKELETLDVLEELGTTKKIVEELKLQLQKEALKCM***************************************DLILMELKQAKLNLGRTINDLGVIQT***********************************************************************************ACIKTAEMRWVAA*********************************************************************************AAGEALIRWTPDYDTI*************FKII**************************************************************************************************QFFAQRRKFGFIHISLP***************
FLLAI******************************************************IDTSPPFGSVKEAVTRFGGSES*****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************FGFIHISL****************
FLLAIVSMEDASIGSAAGQEPVPGTPGIREVRSETNESGIFGFSEAGGGGIRKVGLRAEIDTSPPFGSVKEAVTRFGGSESWPPLYKLAEYHGVGEFDIKKVEEQAAELEKDLIVKELETLDVLEELGTTKKIVEELKLQLQKEALKCMTTPEIKEMNKEHQRNFVSNNNDQQQIMVGCSSPCPASSPDLILMELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRERLTSKFASAGVPTLGEELKQVREKQQIDGSGFKNCSNFSQGEQLKKLADASKAMLVNEQSNKACIKTAEMRWVAAKKMEEAAKAAEALALAEIKG**********GFLLPEPEGQFSPLSF*****************QALEEALNRVENANRKQLAAGEALIRWTPDYDTIKRTQPQPMYSPNRFKIIHPTDHYHPQKSPLNKISNPELVTDDQPKPVLRPTVSMRDILSRK*********************KVALSQMLQELREDLSFPKKTENIECDDDHQQKQFFAQRRKFGFIHISLPLTK************
FLLAIVSMEDASIGS**GQEPVPGTPGIREVRSETNE***********GGIRKVGLRAEIDTSPPFGSVKEAVTRFGGSESWPPLYKLA***GVGEFDIKKVEEQAAELEKDLIVKELETLDVLEELGTTKKIVEELKLQLQKEALKCM***********************************ASSPDLILMELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRERLTSKFASAGVPTLGEELKQVREKQ*I**S*****SNFSQGEQLKKLADASKAMLVNEQSNKACIKTAEMRWVAAKKMEEAAKAAEALALAEIKGLS******************FSPLSFKSQKAEEEAVAEVKHSKQALEEALNRVENANRKQLAAGEALIRWTPDYDTIKRT********************************PELVTDDQPKPVLRPTVSMRDILSRKQVQPEEC********************************K*************KQFFAQRRKFGFIHISLPLTKQSKK********
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FLLAIVSMEDASIGSAAGQEPVPGTPGIREVRSETNESGIFGFSEAGGGGIRKVGLRAEIDTSPPFGSVKEAVTRFGGSESWPPLYKLAEYHGVGEFDxxxxxxxxxxxxxxxxxxxxxTLDVxxxxxxxxxxxxxxxxxxxxxALKCMTTPEIKEMNKEHQRNFVSNNNDQQQIMVGCSSPCPASSPDLILMELKQAKLNLGRTINDLGVIQTSxxxxxxxxxxxxxxxxxxxxxxxxxFASAGVPTLGEELKQVREKQQIDGSGFKNCSNFSQGEQLKKLADASKAMLVNEQSNKACIKTAEMRWVAAKKMEEAAKAAEALALAEIKGLSSSSHEKPSGFLLPEPEGQFSPLSFKSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGEALIRWTPDYDTIKRTQPQPMYSPNRFKIIHPTDHYHPQKSPLNKISNPELVTDDQPKPVLRPTVSMRDILSRKQVQPEECVVRRQAEKHPAERQKVALSQMLQELREDLSFPKKTENIECDDDHQQKQFFAQRRKFGFIHISLPLTKQSKKKMQALNPM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query554 2.2.26 [Sep-21-2011]
Q5XVC7518 WEB family protein At2g40 yes no 0.857 0.916 0.501 1e-109
Q9LYL6446 WEB family protein At3g56 no no 0.694 0.863 0.400 2e-58
F4ISY0522 WEB family protein At2g38 no no 0.772 0.819 0.323 3e-32
Q9SCT6407 WEB family protein At3g51 no no 0.658 0.896 0.294 8e-23
Q9SZB6 779 Protein WEAK CHLOROPLAST no no 0.176 0.125 0.383 1e-09
O48724 807 Protein WEAK CHLOROPLAST no no 0.157 0.107 0.409 4e-08
Q9FMN1751 Protein WEAK CHLOROPLAST no no 0.330 0.243 0.288 4e-05
>sp|Q5XVC7|Y2048_ARATH WEB family protein At2g40480 OS=Arabidopsis thaliana GN=At2g40480 PE=2 SV=1 Back     alignment and function desciption
 Score =  397 bits (1020), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 278/554 (50%), Positives = 346/554 (62%), Gaps = 79/554 (14%)

Query: 20  EPVPGTPGIREVRSE-TNESGIFGFSEAGGG---GIRKVGLRAEIDTSPPFGSVKEAVTR 75
           E +PGTPGI +VR +  +E+  F     G     GIR+VGLRAEIDTSPPFGSV+EAVTR
Sbjct: 15  EAIPGTPGIHDVRIQPGSENSGFCVDPVGVSNVPGIRRVGLRAEIDTSPPFGSVQEAVTR 74

Query: 76  FGGSESWPPLYKLAEYHGVGEFDIKKVEEQAAELEKDLIVKELETLDVLEELGTTKKIVE 135
           FGG   W P +KL +    GEFDIK++EE AAELEKDLIVKELETLDVLE LG+TK+IVE
Sbjct: 75  FGGRGYWVP-FKLDDTFN-GEFDIKRMEEHAAELEKDLIVKELETLDVLEALGSTKRIVE 132

Query: 136 ELKLQLQKEALKC--MTTPEIKEMNKEHQRNFVSNNNDQQQIMVGCSSPCPASSPDLILM 193
           +LK QLQ+EAL+C    + +IKEMN EH                 C    P SSPDLILM
Sbjct: 133 DLKRQLQQEALRCSDQLSSDIKEMNDEH-----------------CHH-NPMSSPDLILM 174

Query: 194 ELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRERLTSKFASAGVPTLGEEL 253
           ELKQAK+NLG+T+++L VIQ+SVESLNK+MK+EK  LE TR +LT  F   G  +L EEL
Sbjct: 175 ELKQAKMNLGKTMDNLVVIQSSVESLNKKMKEEKDFLEKTRAKLTYGF--GGPVSLAEEL 232

Query: 254 KQVREKQQIDGSGFKNCSNFSQGEQLKKLADASKAMLVNEQSNKACIKTAEMRWVAAKKM 313
            +++ K Q+     +        EQ+K +A+A +  L N Q NK  ++TAEMR VAA+KM
Sbjct: 233 SRIKVKPQVQDEPLR--------EQVKMVAEADETGL-NLQ-NKNSLRTAEMRLVAARKM 282

Query: 314 EEAAKAAEALALAEIKGLSSS--SHEKPSGFLLPEPEGQFSPLS---------FKSQKAE 362
           EEAAKAAEALA+AEI  LSS+  S +  S F  PEP    SP++         F + K+ 
Sbjct: 283 EEAAKAAEALAIAEITMLSSNGESQDDDSEFCFPEPPR--SPVTPRGLRIDNDFSTDKSS 340

Query: 363 --------EEAVAEVKHSKQALEEALNRVENANRKQLAAGEALIRWTPDYDTIKRTQPQP 414
                   EEA   VK SKQALE ALNRVE AN KQLAA  A   WT   D++K     P
Sbjct: 341 RRGILKKLEEATEGVKQSKQALEAALNRVEIANVKQLAAENAFRGWT--KDSLKGDNFTP 398

Query: 415 MYSPNRFKIIHPTDHYHPQKSPLNKISNPELVTDDQPKPVLRPTVSMRDILSRKQVQPEE 474
           +    R    H   H+ P               D  PKPVL+  +SMRD+L RKQV  E+
Sbjct: 399 LNHTRRSFFSHLNKHHEP--------------LDILPKPVLKSNISMRDVLRRKQVPKED 444

Query: 475 CVV-RRQAEKHPAERQKVALSQMLQELREDLSFPKKTENIECDDDHQQKQFFAQRRKFGF 533
            V  +RQ+ +    R+ V LSQML+EL++D+ F  + E  E    H++KQ+  QRRKFGF
Sbjct: 445 VVAPQRQSLEGQIPRRNVNLSQMLKELKQDVKFSARGEKEEV---HEEKQYVTQRRKFGF 501

Query: 534 IHISLPLTKQSKKK 547
           IHI+LPL KQSKKK
Sbjct: 502 IHITLPLQKQSKKK 515

Arabidopsis thaliana (taxid: 3702)
>sp|Q9LYL6|Y3270_ARATH WEB family protein At3g56270 OS=Arabidopsis thaliana GN=At3g56270 PE=2 SV=1 Back     alignment and function description
>sp|F4ISY0|Y2837_ARATH WEB family protein At2g38370 OS=Arabidopsis thaliana GN=At2g38370 PE=2 SV=1 Back     alignment and function description
>sp|Q9SCT6|Y3172_ARATH WEB family protein At3g51720 OS=Arabidopsis thaliana GN=At3g51720 PE=2 SV=1 Back     alignment and function description
>sp|Q9SZB6|WEL1_ARATH Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like 1 OS=Arabidopsis thaliana GN=WEL1 PE=2 SV=1 Back     alignment and function description
>sp|O48724|WEB1_ARATH Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1 OS=Arabidopsis thaliana GN=WEB1 PE=1 SV=1 Back     alignment and function description
>sp|Q9FMN1|WEL3_ARATH Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like 3 OS=Arabidopsis thaliana GN=WEL3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query554
255559639561 conserved hypothetical protein [Ricinus 0.907 0.896 0.591 1e-150
356540046559 PREDICTED: uncharacterized protein LOC10 0.900 0.892 0.517 1e-122
118481019538 unknown [Populus trichocarpa] 0.853 0.879 0.513 1e-119
356569266561 PREDICTED: uncharacterized protein LOC10 0.879 0.868 0.504 1e-119
297823979518 hypothetical protein ARALYDRAFT_483106 [ 0.862 0.922 0.500 1e-108
79572219518 uncharacterized protein [Arabidopsis tha 0.857 0.916 0.501 1e-108
2651308541 hypothetical protein [Arabidopsis thalia 0.861 0.881 0.485 1e-106
449441566551 PREDICTED: WEB family protein At2g40480- 0.873 0.878 0.476 1e-103
449499224551 PREDICTED: LOW QUALITY PROTEIN: WEB fami 0.873 0.878 0.476 1e-103
356553741587 PREDICTED: uncharacterized protein LOC10 0.889 0.839 0.472 3e-96
>gi|255559639|ref|XP_002520839.1| conserved hypothetical protein [Ricinus communis] gi|223539970|gb|EEF41548.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  539 bits (1388), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 343/580 (59%), Positives = 393/580 (67%), Gaps = 77/580 (13%)

Query: 20  EPVPGTPGIREVRSETNESGIFGFSEAGGGGIRKVGLRAEIDTSPPFGSVKEAVTRFGGS 79
           EPVPGTPGIRE+RS+T   G+         G RKVGLRAEIDTSPPFGSVKEAVTRFGGS
Sbjct: 8   EPVPGTPGIRELRSDTG-PGLCNQQNGANQGTRKVGLRAEIDTSPPFGSVKEAVTRFGGS 66

Query: 80  ESWPPLYKLAEYHGVGEFDIKKVEEQAAELEKDLIVKELETLDVLEELGTTKKIVEELKL 139
            SW P YK+ E     E DIKKVEEQAAELEKDLIVKELETLDVLEELGTTK+IVEELKL
Sbjct: 67  GSWMPYYKIFE-----EIDIKKVEEQAAELEKDLIVKELETLDVLEELGTTKRIVEELKL 121

Query: 140 QLQKEALKCMTTPE-------IKEMNKEHQRNFVSNNNDQQQIMVGCSSPCPASSPDLIL 192
           QLQKEA++CMT P+       IKEMNKE+ R F  N+ +Q+   +G  SPCP SSPD+IL
Sbjct: 122 QLQKEAMRCMTIPDEPMSSPAIKEMNKENCR-FHVNSREQR---MGSLSPCPTSSPDMIL 177

Query: 193 MELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRERLTSKFASAGVPTLGEE 252
           MELKQAKLNLG+TINDLGVIQTS++SLNK+MKKEK  L+ TRERLTSKF  AGV +L EE
Sbjct: 178 MELKQAKLNLGKTINDLGVIQTSIDSLNKKMKKEKTFLQKTRERLTSKF--AGVLSLEEE 235

Query: 253 LKQVREKQQIDGSGFKNCSNFSQGEQLKKLADA-----SKAMLVNEQSNKACIKTAEMRW 307
           LK  R K  I      N     + EQLKK+  A     SKAML NE + K  +KTAE+R 
Sbjct: 236 LKHARVKPHISD----NAVTDYKAEQLKKMVAAEKTEVSKAMLANEHT-KTNLKTAELRL 290

Query: 308 VAAKKMEEAAKAAEALALAEIKGLSSSSHEKPSGFLLPEPEGQFS-----PLSFKSQKAE 362
           +AAKKMEEAA+AAEA+ALAEIK L  S ++  SGF+LPEPE   S     PL+ K+QKAE
Sbjct: 291 LAAKKMEEAARAAEAVALAEIKAL--SGNDSSSGFVLPEPEKVSSFDARTPLTPKAQKAE 348

Query: 363 ---------------------------EEAVAEVKHSKQALEEALNRVENANRKQLAAGE 395
                                       EA  EVK SKQ LEEALN+VE ANRKQ AA E
Sbjct: 349 GLAKKVEVARLQRREANITKMSILRKLREATEEVKQSKQVLEEALNKVEMANRKQSAAEE 408

Query: 396 ALIRWTPDYDTIKRTQPQPMYSPNRFKIIH---PTDHYHPQKSPLNKISNPELVTDDQPK 452
           A+ +W P+ D   +      Y   RF   H   P +H   Q SPL++     LV +D+ K
Sbjct: 409 AIRKWMPEND---QEGQAAAYCTTRFSNYHLHQPNNH---QDSPLHEAKESNLVNEDR-K 461

Query: 453 PVLRPTVSMRDILSRKQVQPEECVVRRQAEKHPAERQKVALSQMLQELREDLSFPKKTEN 512
           PVL+ TVSMRD+LSRKQVQPEE V+ R   +   ERQKVALSQML ELREDL+F  + E 
Sbjct: 462 PVLKSTVSMRDVLSRKQVQPEEYVMARPTSEVREERQKVALSQMLHELREDLTFHPRAEK 521

Query: 513 IECDDDHQQKQFFAQRRKFGFIHISLPLTKQSKKKMQALN 552
               D   QKQFFAQRRKFGFIHISLP+TK SKKK Q  N
Sbjct: 522 ----DGGDQKQFFAQRRKFGFIHISLPMTKPSKKKTQDFN 557

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356540046|ref|XP_003538502.1| PREDICTED: uncharacterized protein LOC100818214 [Glycine max] Back     alignment and taxonomy information
>gi|118481019|gb|ABK92463.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356569266|ref|XP_003552824.1| PREDICTED: uncharacterized protein LOC100776514 [Glycine max] Back     alignment and taxonomy information
>gi|297823979|ref|XP_002879872.1| hypothetical protein ARALYDRAFT_483106 [Arabidopsis lyrata subsp. lyrata] gi|297325711|gb|EFH56131.1| hypothetical protein ARALYDRAFT_483106 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|79572219|ref|NP_181580.2| uncharacterized protein [Arabidopsis thaliana] gi|75111145|sp|Q5XVC7.1|Y2048_ARATH RecName: Full=WEB family protein At2g40480 gi|52354289|gb|AAU44465.1| hypothetical protein AT2G40480 [Arabidopsis thaliana] gi|330254742|gb|AEC09836.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|2651308|gb|AAB87588.1| hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449441566|ref|XP_004138553.1| PREDICTED: WEB family protein At2g40480-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449499224|ref|XP_004160757.1| PREDICTED: LOW QUALITY PROTEIN: WEB family protein At2g40480-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356553741|ref|XP_003545211.1| PREDICTED: uncharacterized protein LOC100806885 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query554
TAIR|locus:2061913518 AT2G40480 "AT2G40480" [Arabido 0.732 0.783 0.403 2.7e-61
TAIR|locus:2078361446 AT3G56270 "AT3G56270" [Arabido 0.357 0.443 0.406 3.3e-32
TAIR|locus:2057191522 AT2G38370 "AT2G38370" [Arabido 0.140 0.149 0.543 3.4e-28
TAIR|locus:2098247407 AT3G51720 "AT3G51720" [Arabido 0.135 0.184 0.5 1.2e-18
TAIR|locus:2066301 807 WEB1 "WEAK CHLOROPLAST MOVEMEN 0.140 0.096 0.379 7.1e-08
TAIR|locus:2119206 779 AT4G33390 "AT4G33390" [Arabido 0.140 0.100 0.367 7.1e-05
UNIPROTKB|E1BF47 2360 TPR "Uncharacterized protein" 0.178 0.041 0.245 0.00013
UNIPROTKB|F6UV28 2127 TPR "Uncharacterized protein" 0.178 0.046 0.245 0.00017
UNIPROTKB|E2QSE6 2366 TPR "Uncharacterized protein" 0.178 0.041 0.245 0.00021
TAIR|locus:2825751 752 AT1G45545 "AT1G45545" [Arabido 0.133 0.098 0.350 0.0003
TAIR|locus:2061913 AT2G40480 "AT2G40480" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 627 (225.8 bits), Expect = 2.7e-61, P = 2.7e-61
 Identities = 190/471 (40%), Positives = 242/471 (51%)

Query:    95 GEFDIKKVEEQAAELEKDLIVKELETLDVLEELGTTKKIVXXXXXXXXXXXXXCMTTPEI 154
             GEFDIK++EE AAELEKDLIVKELETLDVLE LG+TK+IV             C      
Sbjct:    92 GEFDIKRMEEHAAELEKDLIVKELETLDVLEALGSTKRIVEDLKRQLQQEALRCSD---- 147

Query:   155 KEMNKEHQRNFVSNNNDQQQIMVGCSSPCPASSPDLILMELKQAKLNLGRTINDLGVIQT 214
              +++ +     +   ND+      C    P SSPDLILMELKQAK+NLG+T+++L VIQ+
Sbjct:   148 -QLSSD-----IKEMNDEH-----CHHN-PMSSPDLILMELKQAKMNLGKTMDNLVVIQS 195

Query:   215 SVESLNKRMKKEKRMLETTRERLTSKFASAGVPTLGEELKQVREKQQIDGSGFKNCSNFS 274
             SVESLNK+MK+EK  LE TR +LT  F   G  +L EEL +++ K Q+     +      
Sbjct:   196 SVESLNKKMKEEKDFLEKTRAKLTYGFG--GPVSLAEELSRIKVKPQVQDEPLR------ 247

Query:   275 QGEQLKKLADASKAMLVNEQSNKACIKTAEMRWVXXXXXXXXXXXXXXXXXXXXXGLSSS 334
               EQ+K +A+A +  L N Q NK  ++TAEMR V                      LSS+
Sbjct:   248 --EQVKMVAEADETGL-NLQ-NKNSLRTAEMRLVAARKMEEAAKAAEALAIAEITMLSSN 303

Query:   335 --SHEKPSGFLLPEP-EGQFSPLSF---------KSQ-----KXXXXXXXXXKHSKQALE 377
               S +  S F  PEP     +P            KS      K         K SKQALE
Sbjct:   304 GESQDDDSEFCFPEPPRSPVTPRGLRIDNDFSTDKSSRRGILKKLEEATEGVKQSKQALE 363

Query:   378 EALNRVENANRKQLAAGEALIRWTPDYDTIKRTQPQPMYSPNRFKIIHPTDHYHPQKSPL 437
              ALNRVE AN KQLAA  A   WT D  ++K     P+    R    H   H+ P     
Sbjct:   364 AALNRVEIANVKQLAAENAFRGWTKD--SLKGDNFTPLNHTRRSFFSHLNKHHEP----- 416

Query:   438 NKISNPELVTDDQPKPVLRPTVSMRDILSRKQVQPEECVV-RRQAEKHPAERQKVALSQM 496
                       D  PKPVL+  +SMRD+L RKQV  E+ V  +RQ+ +    R+ V LSQM
Sbjct:   417 ---------LDILPKPVLKSNISMRDVLRRKQVPKEDVVAPQRQSLEGQIPRRNVNLSQM 467

Query:   497 LQELREDLSFPKKTENIECDDDHXXXXXXXXXXXXXXIHISLPLTKQSKKK 547
             L+EL++D+ F  + E  E    H              IHI+LPL KQSKKK
Sbjct:   468 LKELKQDVKFSARGEKEEV---HEEKQYVTQRRKFGFIHITLPLQKQSKKK 515
GO:0003674 "molecular_function" evidence=ND
GO:0005575 "cellular_component" evidence=ND
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2078361 AT3G56270 "AT3G56270" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057191 AT2G38370 "AT2G38370" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2098247 AT3G51720 "AT3G51720" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2066301 WEB1 "WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2119206 AT4G33390 "AT4G33390" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E1BF47 TPR "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F6UV28 TPR "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E2QSE6 TPR "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
TAIR|locus:2825751 AT1G45545 "AT1G45545" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5XVC7Y2048_ARATHNo assigned EC number0.50180.85740.9169yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query554
pfam05701484 pfam05701, DUF827, Plant protein of unknown functi 2e-22
pfam05701484 pfam05701, DUF827, Plant protein of unknown functi 8e-15
smart0045570 smart00455, RBD, Raf-like Ras-binding domain 0.001
pfam0219671 pfam02196, RBD, Raf-like Ras-binding domain 0.004
>gnl|CDD|218704 pfam05701, DUF827, Plant protein of unknown function (DUF827) Back     alignment and domain information 
 Score =  100 bits (250), Expect = 2e-22
 Identities = 88/319 (27%), Positives = 155/319 (48%), Gaps = 36/319 (11%)

Query: 100 KKVEEQAAELEKDLIVKELETLDVLEELGTTKKIVEELKLQLQKEALKCMTTPEIKEMNK 159
           K  E++  EL K++I   ++           +   E +   L+K+  +     E+KE  K
Sbjct: 159 KVNEKKVEELTKEII--AMKESLERAHAAHLEAEEERIGAALEKDQDRETYEKELKEAEK 216

Query: 160 EHQR---NFVSNNNDQQ------QIMVGCSSPCPASSPDLILMELKQAKLNLGRTINDLG 210
           E +R   +     + ++      ++          +S   +L EL++AK NL +   +  
Sbjct: 217 ELERLKQDLDPEKDLEKLAEASAELESLQKEISIMASVASVLKELEEAKANLEKAAEEEK 276

Query: 211 VIQTSVESLNKRMKKEKRMLETTRERLTSKFASAGVPTLGEELKQVREKQQIDGSG---- 266
            ++  VESL + +++EK+ LE  RE+      +A   +L  EL + + +++         
Sbjct: 277 SLRNLVESLKQELEEEKKELEELREKEGEAEEAAS--SLEAELNRTKSEKESKAREKMVE 334

Query: 267 --FKNCSNFSQGEQLKKLADASK---AMLVNE-QSNKACIKTAEMRWVAAKKMEEAAKAA 320
              K     S+ E+ +K A+A++     L  E +  KA ++TAE+R  AA K  EAAKAA
Sbjct: 335 IPLKLQQASSEAEEARKEAEAAREELRKLKEEAEQTKAALETAELRLEAALKEAEAAKAA 394

Query: 321 EALALAEIKGLS----SSSHEKPSGFLLPEPEGQFSPLSFKSQKAEE-------EAVAEV 369
           EALALAEIK L     S+  + P    L   E  +  LS K+++AEE        A+A+V
Sbjct: 395 EALALAEIKALQESEESAKADSPRKITLSLEE--YEELSKKAEEAEELAEKKVAAALAQV 452

Query: 370 KHSKQALEEALNRVENANR 388
           + +K++  E+L ++E A++
Sbjct: 453 EEAKESENESLKKLEEASK 471

This family consists of several plant proteins of unknown function. Several sequences in this family are described as being "myosin heavy chain-like". Length = 484
>gnl|CDD|218704 pfam05701, DUF827, Plant protein of unknown function (DUF827) Back     alignment and domain information
>gnl|CDD|128731 smart00455, RBD, Raf-like Ras-binding domain Back     alignment and domain information
>gnl|CDD|202147 pfam02196, RBD, Raf-like Ras-binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 554
PF05701522 WEMBL: Weak chloroplast movement under blue light; 100.0
PF05701522 WEMBL: Weak chloroplast movement under blue light; 98.17
TIGR021681179 SMC_prok_B chromosome segregation protein SMC, com 95.87
TIGR021691164 SMC_prok_A chromosome segregation protein SMC, pri 94.98
KOG0971 1243 consensus Microtubule-associated protein dynactin 94.41
COG4942420 Membrane-bound metallopeptidase [Cell division and 94.37
TIGR021681179 SMC_prok_B chromosome segregation protein SMC, com 93.77
KOG0996 1293 consensus Structural maintenance of chromosome pro 93.68
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 92.66
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 92.0
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 90.74
COG11961163 Smc Chromosome segregation ATPases [Cell division 89.44
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 88.8
COG11961163 Smc Chromosome segregation ATPases [Cell division 88.49
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 86.81
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 85.74
KOG0971 1243 consensus Microtubule-associated protein dynactin 84.03
PRK11637428 AmiB activator; Provisional 83.15
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 83.13
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information 
Probab=100.00  E-value=9.9e-46  Score=398.56  Aligned_cols=325  Identities=36%  Similarity=0.404  Sum_probs=263.5

Q ss_pred             CCCCccHHHHHHhhcCcccCCcccchhhhcCCChhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHH
Q 042324           63 SPPFGSVKEAVTRFGGSESWPPLYKLAEYHGVGEFDIKKVEEQAAELEKDLIVKELETLDVLEELGTTKKIVEELKLQLQ  142 (554)
Q Consensus        63 ~~pf~sVkeAv~~FGg~~~w~~~~~~~e~~~~~~~el~kv~eq~~ele~~l~~~E~et~~vl~ELe~TKr~iEeLK~~Lq  142 (554)
                      ++||+|||+||++|||+++|+++ +..++....+.+|.++++++++|+++|..+|.++++||.||+.||++|++|+++|+
T Consensus         1 ~apf~SVk~Avs~FG~~~~~k~~-~~~e~~~~~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe   79 (522)
T PF05701_consen    1 SAPFESVKEAVSLFGGSIDWKKH-QSLERVKEKETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLE   79 (522)
T ss_pred             CCCChHHHHHHHHcCCccccccC-CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999998 33355555678999999999999999999999999999999999999999999998


Q ss_pred             HHHHh--------------c--cC--c--------------------hh-------------------------------
Q 042324          143 KEALK--------------C--MT--T--------------------PE-------------------------------  153 (554)
Q Consensus       143 k~a~e--------------~--~~--~--------------------~d-------------------------------  153 (554)
                      +....              +  +.  .                    .+                               
T Consensus        80 ~~~~~~~~a~~~~e~~k~r~~e~e~~~~~~~~~~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~  159 (522)
T PF05701_consen   80 KAQAEEKQAEEDSELAKFRAKELEQGIAEEASVAWKAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQ  159 (522)
T ss_pred             HHHHHHHHHHHhhHHhHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77411              0  00  0                    00                               


Q ss_pred             --------------hhhhh------hhhhh-ccccCccchhhhhc-----------------------------------
Q 042324          154 --------------IKEMN------KEHQR-NFVSNNNDQQQIMV-----------------------------------  177 (554)
Q Consensus       154 --------------ikEm~------ke~~~-~~~~~~~aee~~~~-----------------------------------  177 (554)
                                    +.+++      ++.++ .|.+|.+++++.++                                   
T Consensus       160 aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~~k~  239 (522)
T PF05701_consen  160 AEEAVSAAEENEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEELEAAKD  239 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          00011      33333 57777777766551                                   


Q ss_pred             ------------------------cCCCC----CC-----CCChHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHH
Q 042324          178 ------------------------GCSSP----CP-----ASSPDLILMELKQAKLNLGRTINDLGVIQTSVESLNKRMK  224 (554)
Q Consensus       178 ------------------------~~~~~----~~-----~~~p~~i~~ELeeAK~nL~Ka~~El~sLrssveSLr~ELe  224 (554)
                                              +....    ..     ......++.||+++|.+|+++++|+++|+..|+||+++|+
T Consensus       240 Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe  319 (522)
T PF05701_consen  240 LESKLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELE  319 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                    00000    00     0124678999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhccCCCChHHHHHHHHHhhhhcccc------------cccCccchHHHHHHHHHHH-----HH
Q 042324          225 KEKRMLETTRERLTSKFASAGVPTLGEELKQVREKQQIDGSG------------FKNCSNFSQGEQLKKLADA-----SK  287 (554)
Q Consensus       225 kEK~eLe~lrEKl~e~~As~~VssLeaEL~ktr~~l~v~~~~------------~e~~~~s~EaEq~k~~aE~-----~k  287 (554)
                      ++|.++.+++++  +.++++.|++|+.+|++++++|++....            ..+.++++|+++++.+++.     .+
T Consensus       320 ~~K~el~~lke~--e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~  397 (522)
T PF05701_consen  320 KEKEELERLKER--EKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEK  397 (522)
T ss_pred             HHHHHHHHHHHH--HHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999996  4555559999999999999999654311            1125679999999999988     68


Q ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-------CCCCCcccCCCcccccccchhHHH
Q 042324          288 AMLVNEQSNKACIKTAEMRWVAAKKMEEAAKAAEALALAEIKGLSSSSH-------EKPSGFLLPEPEGQFSPLSFKSQK  360 (554)
Q Consensus       288 ak~EaEq~tKa~i~TAE~RL~AA~Ke~EAAKAAEalALaeIKaLses~~-------ess~~itls~~e~EY~~Ls~KA~E  360 (554)
                      ++.|+++ +++.+.|+|.||++|++|++||||+|++|+++|++|+++.+       +++++||||.++  |++|++||++
T Consensus       398 ~k~E~e~-~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~l~e~~~~~~~~~~~~~~~Vtls~eE--y~~L~~ka~e  474 (522)
T PF05701_consen  398 AKEEAEQ-TKAAIKTAEERLEAALKEAEAAKASEALALAEIKALSESESSSRASDSESSSKVTLSLEE--YESLSKKAEE  474 (522)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCCCeeecHHH--HHHHHHHHHH
Confidence            8999999 99999999999999999999999999999999999998641       366889999996  9999999984


Q ss_pred             -------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 042324          361 -------AEEEAVAEVKHSKQALEEALNRVENANRKQLAA  393 (554)
Q Consensus       361 -------KLEEa~kEvE~~K~ALeeAL~rAE~An~~KlAv  393 (554)
                             |+..+..||+..|.+-.++|+|.|.+.+--...
T Consensus       475 ~ee~a~kkva~A~aqve~ak~se~e~l~kle~~~~e~~~~  514 (522)
T PF05701_consen  475 AEELAEKKVAAAMAQVEAAKASEKEILEKLEEAMKEIEER  514 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   888888888888888888888888877654333

Several sequences in this family are described as being myosin heavy chain-like.
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query554
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-14
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 73.7 bits (180), Expect = 8e-14
 Identities = 81/534 (15%), Positives = 151/534 (28%), Gaps = 153/534 (28%)

Query: 94  VGEFDIKKVEEQAAEL----EKDLIVKE-------LETLDVLEELGTT--KKIVEE---- 136
           V  FD K V++    +    E D I+         L     L        +K VEE    
Sbjct: 30  VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI 89

Query: 137 ----LKLQLQKEALKCMTTPEIKEMNKEHQRNFVSNNNDQQQIMVGCSSPCPASSPDLIL 192
               L   ++ E  +    P +       QR+ + N+N   Q+     +    S     L
Sbjct: 90  NYKFLMSPIKTEQRQ----PSMMTRMYIEQRDRLYNDN---QVF----AKYNVSRLQPYL 138

Query: 193 MELKQAKLNL--------------GRTI------NDLGVIQTSVE-----SLNKRMKKEK 227
            +L+QA L L              G+T           V           +L      E 
Sbjct: 139 -KLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET 197

Query: 228 --RMLETTRERLTSKFA-----SAGVPTLGEELKQVREKQQIDGSGFKNC----SNFSQG 276
              ML+    ++   +      S+ +      ++    ++ +    ++NC     N    
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA-ELRRLLKSKPYENCLLVLLNVQNA 256

Query: 277 EQLKKLADASKAMLV--NEQSNKACIKTAEMRWVAAKKMEEAAKAAEALALAEIKGLSSS 334
           +       + K +L+    +     +  A    ++           E  +L     L   
Sbjct: 257 KAWNAFNLSCK-ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL-----LLKY 310

Query: 335 SHEKPSGFLLPEPEGQFSPLSFKSQKAEEEAVAEVKHSKQALEEALNRVEN---ANRKQL 391
              +P    LP      +P            +AE      ++ + L   +N    N  +L
Sbjct: 311 LDCRPQD--LPREVLTTNPRRLSI-------IAE------SIRDGLATWDNWKHVNCDKL 355

Query: 392 AAGEALIRWTPDYDTIKRTQPQPMYS-----PNRFKIIHPT----------DHYHPQKSP 436
                +I  +   + ++  + + M+      P    I  PT                   
Sbjct: 356 ---TTIIESS--LNVLEPAEYRKMFDRLSVFPPSAHI--PTILLSLIWFDVIKSDVMVV- 407

Query: 437 LNKISNPELVTDDQPKPVLRPTVSMRDILSRKQVQPEECVVRRQAEKHPAERQKVALSQM 496
           +NK+    LV + QPK     T+S+  I    +V+ E      +   H           +
Sbjct: 408 VNKLHKYSLV-EKQPKE---STISIPSIYLELKVKLEN-----EYALH---------RSI 449

Query: 497 LQELREDLSFPKKTENIECDDD--------H----QQKQFFAQRRK----FGFI 534
           +       +F          D         H    +  +     R     F F+
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL 503

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query554
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 95.05
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 92.27
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 91.28
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 90.26
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 86.84
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 81.78
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 81.0
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
Probab=95.05  E-value=0.57  Score=45.83  Aligned_cols=92  Identities=11%  Similarity=0.043  Sum_probs=46.2

Q ss_pred             HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccCCCcccccccchhHHHHHHHHHHHH
Q 042324          290 LVNEQSNKACIKTAEMRWVAAKKMEEAAKAAEALALAEIKGLSSSSHEKPSGFLLPEPEGQFSPLSFKSQKAEEEAVAEV  369 (554)
Q Consensus       290 ~EaEq~tKa~i~TAE~RL~AA~Ke~EAAKAAEalALaeIKaLses~~ess~~itls~~e~EY~~Ls~KA~EKLEEa~kEv  369 (554)
                      .|++. .+..+..+|.++..+...+++.++.-.-+-+.+..+..                ++..+.......+.+..+++
T Consensus        97 kEie~-~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~----------------~l~~~~~~~~~~~~e~~~e~  159 (256)
T 3na7_A           97 IEEDI-AKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEK----------------LALELESLVENEVKNIKETQ  159 (256)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHH
Confidence            34555 55556666666666666666655544444444443332                13334444445566666665


Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcc
Q 042324          370 KHSKQALEEALNRVENANRKQLAAGEALIRWT  401 (554)
Q Consensus       370 E~~K~ALeeAL~rAE~An~~KlAvEeeLRrWR  401 (554)
                      ......-+......   ...=++.=+-+|+|+
T Consensus       160 ~~l~~~r~~l~~~i---~~~lL~~Yerir~~~  188 (256)
T 3na7_A          160 QIIFKKKEDLVEKT---EPKIYSFYERIRRWA  188 (256)
T ss_dssp             HHHHHHHHHHHHTS---CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcC---CHHHHHHHHHHHHhC
Confidence            54443322222221   234455556688886
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00