Citrus Sinensis ID: 042331

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------38
MRIVRKDLIPNGPGSVKMIPVDSDDLWFAYNLVNAGDSVLAVTVRKVVRQTKSGGKDAERVKLKLEIKVEALDYDKEGSALRISGKNILENEHVKIGAFHSLEIELHRPFVLTKDVWDSVALDTLHQASDSAATADLAVVLMQEGLANIFLVGRSMTITRSRIETSIPRKHGPAVARYESALNKFFDSVLHAFLKHVDFNVVRCAVIASPGFTKDQFHRYLLLEAERTQLRPIIANKSRIVIVHTSSGYKHSLREVLDASNVMNLIKETKAAQEVKVLKEFFNMLSNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRNFEIATRKKYVDLVNSVKDSGGTAHIFSSMHFSGEQLGQLTGVAAILRFPLPDLEDIEM
cEEEEEEccccccEEEEEEcccccHHHHHHHccccccEEEEEEEEEEEEcccccccccEEEEEEEEEEEEEEEccccccEEEEEEEEEEccccccccEEEEEEEcccccEEEEEEcccHHHHHHHHHHHcccccccEEEEEEEccEEEEEEEEccEEEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHHHHHHcccHHHHHccccEEEEEcccccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHHHHHHHHcccEEEEEccccccHHHHcccccEEEEEEccccccccccc
cEEEEEEccccccEEEEEEcccHHHHHHHHHHHccccEEEEEEEEEEEEccccccccEEEEEEEEEEEEEEEEEcccccEEEEEEEEEEcccccccccEEEEEEEcccEEEEEEccccHHHHHHHHHHccHcccccEEEEEEccccEEEEEEEcccEEEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEcccccHHHHHHHHHHHHHHHccccHHHHcccEEEEEcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEccHHHHHHHHHcccHcEEEEEHHHHccccHHHHHHHHHHHHHHHHcccEEEEEEcccccHHHHHHHccHEEEEEccccccHHccc
mrivrkdlipngpgsvkmipvdsddLWFAYNLVNAGDSVLAVTVRKVVRQtksggkdaERVKLKLEIKVEALdydkegsalrisgknilenehvkiGAFHSleielhrpfvltkdvwdSVALDtlhqasdsaATADLAVVLMQEGLANIFLVGRSMTITRsrietsiprkhgpavARYESALNKFFDSVLHAFLKHVDFNVVRCaviaspgftkdQFHRYLLLEAERtqlrpiianksRIVIVHTSSGYKHSLREVLDASNVMNLIKETKAAQEVKVLKEFFNMlsndptracygpkhvEVAHERMAVQTLLITDDLFRNFEIATRKKYVDLVNSVkdsggtahifssmhfsgeqlgqLTGVAAilrfplpdlediem
mrivrkdlipngpgsvkmiPVDSDDLWFAYNLVNAGDSVLAVTVRKVVrqtksggkdaervklkleikvealdydkegsalrisgknilenEHVKIGAFHSLEIELHRPFVLTKDVWDSVALDTLHQASDSAATADLAVVLMQEGLANIFLVGRSMTITrsrietsiprkhgpAVARYESALNKFFDSVLHAFLKHVDFNVVRCAVIASPGFTKDQFHRYLLLEAERtqlrpiianksrivIVHTSSGYKHSLREVLDASNVMNLIKETKAAQEVKVLKEFFNMLSNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRNFEIATRKKYVDLVNSVKDSGGTAHIFSSMHFSGEQLGQLTGVAAILRfplpdlediem
MRIVRKDLIPNGPGSVKMIPVDSDDLWFAYNLVNAGDSVLAVTVRKVVRQTKSGGKDAERVKLKLEIKVEALDYDKEGSALRISGKNILENEHVKIGAFHSLEIELHRPFVLTKDVWDSVALDTLHQASDSAATADLAVVLMQEGLANIFLVGRSMTITRSRIETSIPRKHGPAVARYESALNKFFDSVLHAFLKHVDFNVVRCAVIASPGFTKDQFHRYLLLEAERTQLRPIIANKSRIVIVHTSSGYKHSLREVLDASNVMNLIKETKAAQEVKVLKEFFNMLSNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRNFEIATRKKYVDLVNSVKDSGGTAHIFSSMHFSGEQLGQLTGVAAILRFPLPDLEDIEM
***************VKMIPVDSDDLWFAYNLVNAGDSVLAVTVRKVV****************LEIKVEALDYDKEGSALRISGKNILENEHVKIGAFHSLEIELHRPFVLTKDVWDSVALDTLHQASDSAATADLAVVLMQEGLANIFLVGRSMTITRSRIETSIPRKHGPAVARYESALNKFFDSVLHAFLKHVDFNVVRCAVIASPGFTKDQFHRYLLLEAERTQLRPIIANKSRIVIVHTSSGYKHSLREVLDASNVMNLIKETKAAQEVKVLKEFFNMLSNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRNFEIATRKKYVDLVNSVKDSGGTAHIFSSMHFSGEQLGQLTGVAAILRFPL********
MRIVR**L**NGPGSVKMIPVDSDDLWFAYNLVNAGDSVLAVTV*******************KLEIKVEALDYDKEGSALRISGKNILENEHVKIGAFHSLEIELHRPFVLTKDVWDSVALDTLHQASDSAATADLAVVLMQEGLANIFLVGRSMTITRS***********************FFDSVLHAFLKHVDFNVVRCAVIASPGFTKDQFHRYLLLEAERTQLRPIIANKSRIVIVHTSSGYKHSLREVLDASNVMNLIKETKAAQEVKVLKEFFNMLSNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRNFEIATRKKYVDLVNSVKDSGGTAHIFSSMHFSGEQLGQLTGVAAILRFPLPDLED*E*
MRIVRKDLIPNGPGSVKMIPVDSDDLWFAYNLVNAGDSVLAVTVRKVV*********AERVKLKLEIKVEALDYDKEGSALRISGKNILENEHVKIGAFHSLEIELHRPFVLTKDVWDSVALDTLHQASDSAATADLAVVLMQEGLANIFLVGRSMTITRSRIETSIPRKHGPAVARYESALNKFFDSVLHAFLKHVDFNVVRCAVIASPGFTKDQFHRYLLLEAERTQLRPIIANKSRIVIVHTSSGYKHSLREVLDASNVMNLIKETKAAQEVKVLKEFFNMLSNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRNFEIATRKKYVDLVNSVKDSGGTAHIFSSMHFSGEQLGQLTGVAAILRFPLPDLEDIEM
MRIVRKDLIPNGPGSVKMIPVDSDDLWFAYNLVNAGDSVLAVTVRKVVRQTKSGGKDAERVKLKLEIKVEALDYDKEGSALRISGKNILENEHVKIGAFHSLEIELHRPFVLTKDVWDSVALDTLHQASDSAATADLAVVLMQEGLANIFLVGRSMTITRSRIETSIPRKHGPAVARYESALNKFFDSVLHAFLKHVDFNVVRCAVIASPGFTKDQFHRYLLLEAERTQLRPIIANKSRIVIVHTSSGYKHSLREVLDASNVMNLIKETKAAQEVKVLKEFFNMLSNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRNFEIATRKKYVDLVNSVKDSGGTAHIFSSMHFSGEQLGQLTGVAAILRFPLPDL*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRIVRKDLIPNGPGSVKMIPVDSDDLWFAYNLVNAGDSVLAVTVRKVVRQTKSGGKDAERVKLKLEIKVEALDYDKEGSALRISGKNILENEHVKIGAFHSLEIELHRPFVLTKDVWDSVALDTLHQASDSAATADLAVVLMQEGLANIFLVGRSMTITRSRIETSIPRKHGPAVARYESALNKFFDSVLHAFLKHVDFNVVRCAVIASPGFTKDQFHRYLLLEAERTQLRPIIANKSRIVIVHTSSGYKHSLREVLDASNVMNLIKETKAAQEVKVLKEFFNMLSNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRNFEIATRKKYVDLVNSVKDSGGTAHIFSSMHFSGEQLGQLTGVAAILRFPLPDLEDIEM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query378 2.2.26 [Sep-21-2011]
Q5XIP1385 Protein pelota homolog OS yes no 0.997 0.979 0.488 1e-110
P48612395 Protein pelota OS=Drosoph yes no 0.981 0.939 0.482 1e-109
Q58DV0385 Protein pelota homolog OS yes no 0.997 0.979 0.485 1e-109
Q80X73385 Protein pelota homolog OS yes no 0.997 0.979 0.482 1e-109
Q9BRX2385 Protein pelota homolog OS yes no 0.997 0.979 0.488 1e-108
Q7ZWC4385 Protein pelota homolog OS yes no 0.997 0.979 0.482 1e-108
Q5RCE3385 Protein pelota homolog OS yes no 0.997 0.979 0.488 1e-108
Q5ZK01385 Protein pelota homolog OS yes no 0.997 0.979 0.482 1e-108
Q5U567383 Protein pelota homolog OS N/A no 0.986 0.973 0.490 1e-107
P50444381 Uncharacterized protein R yes no 1.0 0.992 0.436 9e-90
>sp|Q5XIP1|PELO_RAT Protein pelota homolog OS=Rattus norvegicus GN=Pelo PE=2 SV=1 Back     alignment and function desciption
 Score =  397 bits (1020), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 184/377 (48%), Positives = 274/377 (72%)

Query: 1   MRIVRKDLIPNGPGSVKMIPVDSDDLWFAYNLVNAGDSVLAVTVRKVVRQTKSGGKDAER 60
           M++VRKD+  +  G V ++P + +D+W  YNLV  GDS+ A T+RKV  ++ +G   + R
Sbjct: 1   MKLVRKDIEKDNAGQVTLVPEEPEDMWHTYNLVQVGDSLRASTIRKVQTESSTGSVGSNR 60

Query: 61  VKLKLEIKVEALDYDKEGSALRISGKNILENEHVKIGAFHSLEIELHRPFVLTKDVWDSV 120
           V+  L + VEA+D+D +   LR+ G NI ENE+VK+GA+H++E+E +R F L K  WDSV
Sbjct: 61  VRTTLTLCVEAIDFDSQACQLRVKGTNIQENEYVKMGAYHTIELEPNRQFTLAKKQWDSV 120

Query: 121 ALDTLHQASDSAATADLAVVLMQEGLANIFLVGRSMTITRSRIETSIPRKHGPAVARYES 180
            L+ + QA D A +AD+A V+MQEGLA++ LV  SMT+TR+++E +IPRK     ++++ 
Sbjct: 121 VLERIEQACDPAWSADVAAVVMQEGLAHVCLVTPSMTLTRAKVEVNIPRKRKGNCSQHDR 180

Query: 181 ALNKFFDSVLHAFLKHVDFNVVRCAVIASPGFTKDQFHRYLLLEAERTQLRPIIANKSRI 240
           AL +F++ V+ A  +H++F VV+C ++ASPGF ++QF  Y+  +A +T  + ++ N+S+ 
Sbjct: 181 ALERFYEQVVQAIQRHINFEVVKCILVASPGFVREQFCDYMFQQAVKTDNKVLLENRSKF 240

Query: 241 VIVHTSSGYKHSLREVLDASNVMNLIKETKAAQEVKVLKEFFNMLSNDPTRACYGPKHVE 300
           + VH SSG+K+SL+EVL    V + + +TKAA EVK L +F+ ML ++P RA YG K VE
Sbjct: 241 LQVHASSGHKYSLKEVLCDPTVASRLSDTKAAGEVKALDDFYKMLQHEPDRAFYGLKQVE 300

Query: 301 VAHERMAVQTLLITDDLFRNFEIATRKKYVDLVNSVKDSGGTAHIFSSMHFSGEQLGQLT 360
            A+E +A+ TLLI+D+LFR+ ++ATR +YV LV+SVK++ GT  IFSS+H SGEQLGQLT
Sbjct: 301 RANEALAIDTLLISDELFRHQDVATRSRYVRLVDSVKENAGTVRIFSSLHVSGEQLGQLT 360

Query: 361 GVAAILRFPLPDLEDIE 377
           GVAAILRFP+P+L D E
Sbjct: 361 GVAAILRFPVPELSDQE 377
Required for normal chromosome segregation during cell division and genomic stability (By similarity). May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non-functional ribosomes and degrade damaged mRNAs. May have ribonuclease activity.
Rattus norvegicus (taxid: 10116)
EC: 3EC: .EC: 1EC: .EC: -EC: .EC: -
>sp|P48612|PELO_DROME Protein pelota OS=Drosophila melanogaster GN=pelo PE=2 SV=2 Back     alignment and function description
>sp|Q58DV0|PELO_BOVIN Protein pelota homolog OS=Bos taurus GN=PELO PE=2 SV=2 Back     alignment and function description
>sp|Q80X73|PELO_MOUSE Protein pelota homolog OS=Mus musculus GN=Pelo PE=2 SV=3 Back     alignment and function description
>sp|Q9BRX2|PELO_HUMAN Protein pelota homolog OS=Homo sapiens GN=PELO PE=1 SV=2 Back     alignment and function description
>sp|Q7ZWC4|PELO_DANRE Protein pelota homolog OS=Danio rerio GN=pelo PE=2 SV=1 Back     alignment and function description
>sp|Q5RCE3|PELO_PONAB Protein pelota homolog OS=Pongo abelii GN=PELO PE=2 SV=1 Back     alignment and function description
>sp|Q5ZK01|PELO_CHICK Protein pelota homolog OS=Gallus gallus GN=PELO PE=2 SV=1 Back     alignment and function description
>sp|Q5U567|PELO_XENLA Protein pelota homolog OS=Xenopus laevis GN=pelo PE=2 SV=1 Back     alignment and function description
>sp|P50444|YNU6_CAEEL Uncharacterized protein R74.6 OS=Caenorhabditis elegans GN=R74.6 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query378
255543102378 pelota, putative [Ricinus communis] gi|2 1.0 1.0 0.822 0.0
225431029378 PREDICTED: protein pelota [Vitis vinifer 1.0 1.0 0.820 0.0
449442249379 PREDICTED: protein pelota-like [Cucumis 1.0 0.997 0.815 0.0
363807988379 uncharacterized protein LOC100793935 [Gl 1.0 0.997 0.802 0.0
356535240379 PREDICTED: protein pelota-like [Glycine 1.0 0.997 0.799 0.0
224082576377 predicted protein [Populus trichocarpa] 0.997 1.0 0.814 0.0
297799208378 hypothetical protein ARALYDRAFT_492022 [ 1.0 1.0 0.767 1e-174
30687676378 Eukaryotic release factor 1 (eRF1) famil 1.0 1.0 0.764 1e-173
116310865378 OSIGBa0132E09-OSIGBa0108L24.21 [Oryza sa 1.0 1.0 0.708 1e-161
38345200378 OSJNBa0015K02.10 [Oryza sativa Japonica 1.0 1.0 0.708 1e-161
>gi|255543102|ref|XP_002512614.1| pelota, putative [Ricinus communis] gi|223548575|gb|EEF50066.1| pelota, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  666 bits (1718), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/378 (82%), Positives = 351/378 (92%)

Query: 1   MRIVRKDLIPNGPGSVKMIPVDSDDLWFAYNLVNAGDSVLAVTVRKVVRQTKSGGKDAER 60
           M++ RK ++P+GPGSVK+ P+DSDDLWFAYNL++ GDSV+AVTVRKV+RQ  SGG+DAER
Sbjct: 1   MKVARKGIVPDGPGSVKLTPIDSDDLWFAYNLISPGDSVMAVTVRKVLRQAASGGRDAER 60

Query: 61  VKLKLEIKVEALDYDKEGSALRISGKNILENEHVKIGAFHSLEIELHRPFVLTKDVWDSV 120
           VKLKLEIKVEA+DYDK GSALRI GKN+LENEHVKIGAFH+LE+ELHRPFVL K++WDS+
Sbjct: 61  VKLKLEIKVEAIDYDKVGSALRIRGKNVLENEHVKIGAFHTLELELHRPFVLRKEIWDSL 120

Query: 121 ALDTLHQASDSAATADLAVVLMQEGLANIFLVGRSMTITRSRIETSIPRKHGPAVARYES 180
           ALD L QASD  A+ADLAVVLMQEGLA+IFLVG+SMT TRSRIETSIPRKHGPA+A YES
Sbjct: 121 ALDILSQASDPGASADLAVVLMQEGLAHIFLVGKSMTSTRSRIETSIPRKHGPAIAGYES 180

Query: 181 ALNKFFDSVLHAFLKHVDFNVVRCAVIASPGFTKDQFHRYLLLEAERTQLRPIIANKSRI 240
           ALNKFF+ +L AFLKH+DF+V+RCAVIASPGFTKDQFHR+LLLEAER QLRPII NKSRI
Sbjct: 181 ALNKFFEHILQAFLKHIDFSVIRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRI 240

Query: 241 VIVHTSSGYKHSLREVLDASNVMNLIKETKAAQEVKVLKEFFNMLSNDPTRACYGPKHVE 300
           V+VHTSSGYKHSL+EVLDA N+MN+IK+TKAAQEV+ L+EFF+MLSNDP RACYGPKHVE
Sbjct: 241 VLVHTSSGYKHSLKEVLDAPNIMNMIKDTKAAQEVRALEEFFDMLSNDPARACYGPKHVE 300

Query: 301 VAHERMAVQTLLITDDLFRNFEIATRKKYVDLVNSVKDSGGTAHIFSSMHFSGEQLGQLT 360
           VAHERMAVQTLLITDDLFRN +I TRKKYV+LVNSVKDSGG AHIFSSMH SGEQL QLT
Sbjct: 301 VAHERMAVQTLLITDDLFRNADIPTRKKYVNLVNSVKDSGGNAHIFSSMHVSGEQLAQLT 360

Query: 361 GVAAILRFPLPDLEDIEM 378
           G+AAILRFPLPDLEDIEM
Sbjct: 361 GIAAILRFPLPDLEDIEM 378

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225431029|ref|XP_002279875.1| PREDICTED: protein pelota [Vitis vinifera] gi|297735305|emb|CBI17667.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449442249|ref|XP_004138894.1| PREDICTED: protein pelota-like [Cucumis sativus] gi|449477765|ref|XP_004155116.1| PREDICTED: protein pelota-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|363807988|ref|NP_001242204.1| uncharacterized protein LOC100793935 [Glycine max] gi|255640054|gb|ACU20318.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356535240|ref|XP_003536156.1| PREDICTED: protein pelota-like [Glycine max] Back     alignment and taxonomy information
>gi|224082576|ref|XP_002306749.1| predicted protein [Populus trichocarpa] gi|222856198|gb|EEE93745.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297799208|ref|XP_002867488.1| hypothetical protein ARALYDRAFT_492022 [Arabidopsis lyrata subsp. lyrata] gi|297313324|gb|EFH43747.1| hypothetical protein ARALYDRAFT_492022 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30687676|ref|NP_194495.3| Eukaryotic release factor 1 (eRF1) family protein [Arabidopsis thaliana] gi|3941543|gb|AAC82379.1| pelota [Arabidopsis thaliana] gi|4469016|emb|CAB38277.1| pelota (PEL1) [Arabidopsis thaliana] gi|7269619|emb|CAB81415.1| pelota (PEL1) [Arabidopsis thaliana] gi|18377690|gb|AAL66995.1| putative pelota (PEL1) protein [Arabidopsis thaliana] gi|20465995|gb|AAM20219.1| putative pelota protein (PEL1) [Arabidopsis thaliana] gi|332659974|gb|AEE85374.1| Eukaryotic release factor 1 (eRF1) family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|116310865|emb|CAH67807.1| OSIGBa0132E09-OSIGBa0108L24.21 [Oryza sativa Indica Group] gi|125550079|gb|EAY95901.1| hypothetical protein OsI_17764 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|38345200|emb|CAE02893.2| OSJNBa0015K02.10 [Oryza sativa Japonica Group] gi|38346417|emb|CAE54582.1| OSJNBa0011F23.23 [Oryza sativa Japonica Group] gi|222629704|gb|EEE61836.1| hypothetical protein OsJ_16488 [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query378
TAIR|locus:2137732378 PEL1 "AT4G27650" [Arabidopsis 1.0 1.0 0.764 1e-155
TAIR|locus:2085465395 AT3G58390 "AT3G58390" [Arabido 0.846 0.810 0.75 1.8e-142
FB|FBgn0011207395 pelo "pelota" [Drosophila mela 0.992 0.949 0.485 2.4e-99
RGD|1359591385 Pelo "pelota homolog (Drosophi 0.997 0.979 0.488 1e-98
UNIPROTKB|Q58DV0385 PELO "Protein pelota homolog" 0.997 0.979 0.485 4.5e-98
MGI|MGI:2145154385 Pelo "pelota homolog (Drosophi 0.997 0.979 0.482 5.8e-98
UNIPROTKB|Q9BRX2385 PELO "Protein pelota homolog" 0.997 0.979 0.488 1.2e-97
UNIPROTKB|F2Z5N9385 PELO "Uncharacterized protein" 0.997 0.979 0.482 1.2e-97
ZFIN|ZDB-GENE-040426-1074385 pelo "pelota homolog (Drosophi 0.997 0.979 0.482 1.2e-97
UNIPROTKB|Q5ZK01385 PELO "Protein pelota homolog" 0.997 0.979 0.482 4.1e-97
TAIR|locus:2137732 PEL1 "AT4G27650" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1518 (539.4 bits), Expect = 1.0e-155, P = 1.0e-155
 Identities = 289/378 (76%), Positives = 338/378 (89%)

Query:     1 MRIVRKDLIPNGPGSVKMIPVDSDDLWFAYNLVNAGDSVLAVTVRKVVRQTKSGGKDAER 60
             M+IVR+D + NGPGSVKM+  DSDDLW+AYNL+  GDSV+AVT RKV R+   GG+D+ER
Sbjct:     1 MKIVRRDFVRNGPGSVKMVAEDSDDLWYAYNLIAVGDSVMAVTFRKVQREIPGGGRDSER 60

Query:    61 VKLKLEIKVEALDYDKEGSALRISGKNILENEHVKIGAFHSLEIELHRPFVLTKDVWDSV 120
             VKLKLE++VE +DYDK+GS LRI GKNILENEHVKIGAFH+LE+EL RPFVL K++WDS+
Sbjct:    61 VKLKLEVQVEEVDYDKDGSVLRIRGKNILENEHVKIGAFHTLELELKRPFVLRKEMWDSM 120

Query:   121 ALDTLHQASDSAATADLAVVLMQEGLANIFLVGRSMTITRSRIETSIPRKHGPAVARYES 180
             ALDTL QASD AA+ADLAVVLMQEGLA IFLVGRS+T +R+RIETSIPRKHGPA+A YES
Sbjct:   121 ALDTLKQASDPAASADLAVVLMQEGLAQIFLVGRSVTSSRARIETSIPRKHGPAIAGYES 180

Query:   181 ALNKFFDSVLHAFLKHVDFNVVRCAVIASPGFTKDQFHRYLLLEAERTQLRPIIANKSRI 240
             AL KFF++VL AF+KHVDF+VVRCAV+ASPGFTKDQFHR+LLLEAER QLRPII NKSRI
Sbjct:   181 ALKKFFENVLQAFVKHVDFSVVRCAVVASPGFTKDQFHRHLLLEAERRQLRPIIENKSRI 240

Query:   241 VIVHTSSGYKHSLREVLDASNVMNLIKETKAAQEVKVLKEFFNMLSNDPTRACYGPKHVE 300
             ++VHT+SGY+HSL EVL A NVMN+IK+TKAA+EVK L +F NMLS +P RACYGPKHVE
Sbjct:   241 ILVHTNSGYRHSLGEVLHAPNVMNMIKDTKAAKEVKALNDFHNMLSTEPDRACYGPKHVE 300

Query:   301 VAHERMAVQTLLITDDLFRNFEIATRKKYVDLVNSVKDSGGTAHIFSSMHFSGEQLGQLT 360
             VA+ERMA+QTLLITD+LFRN ++ TRKKYV+LV SVKDSGG A IFS+MH SGEQL QLT
Sbjct:   301 VANERMAIQTLLITDELFRNSDVKTRKKYVNLVESVKDSGGDAFIFSAMHVSGEQLAQLT 360

Query:   361 GVAAILRFPLPDLEDIEM 378
             G+AA+LRFPLP+LEDIEM
Sbjct:   361 GIAALLRFPLPELEDIEM 378
GO:0003747 "translation release factor activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006415 "translational termination" evidence=ISS
GO:0007126 "meiosis" evidence=ISS
TAIR|locus:2085465 AT3G58390 "AT3G58390" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0011207 pelo "pelota" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
RGD|1359591 Pelo "pelota homolog (Drosophila)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q58DV0 PELO "Protein pelota homolog" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:2145154 Pelo "pelota homolog (Drosophila)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BRX2 PELO "Protein pelota homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z5N9 PELO "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1074 pelo "pelota homolog (Drosophila)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZK01 PELO "Protein pelota homolog" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5XIP1PELO_RAT3, ., 1, ., -, ., -0.48800.99730.9792yesno
Q5RCE3PELO_PONAB3, ., 1, ., -, ., -0.48800.99730.9792yesno
Q80X73PELO_MOUSE3, ., 1, ., -, ., -0.48270.99730.9792yesno
Q9BRX2PELO_HUMAN3, ., 1, ., -, ., -0.48800.99730.9792yesno
Q5ZK01PELO_CHICK3, ., 1, ., -, ., -0.48270.99730.9792yesno
O27679PELO_METTH3, ., 1, ., -, ., -0.30150.91000.9745yesno
P33309DOM34_YEAST3, ., 1, ., -, ., -0.30800.98670.9663yesno
Q7ZWC4PELO_DANRE3, ., 1, ., -, ., -0.48270.99730.9792yesno
P48612PELO_DROME3, ., 1, ., -, ., -0.48240.98140.9392yesno
Q58DV0PELO_BOVIN3, ., 1, ., -, ., -0.48540.99730.9792yesno
Q9USL5DOM34_SCHPO3, ., 1, ., -, ., -0.40540.97880.9487yesno
P50444YNU6_CAEELNo assigned EC number0.43651.00.9921yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query378
COG1537352 COG1537, PelA, Predicted RNA-binding proteins [Gen 9e-90
TIGR00111351 TIGR00111, pelota, mRNA surveillance protein pelot 9e-65
pfam03463133 pfam03463, eRF1_1, eRF1 domain 1 1e-38
pfam03465100 pfam03465, eRF1_3, eRF1 domain 3 2e-38
pfam03464129 pfam03464, eRF1_2, eRF1 domain 2 2e-34
TIGR03676357 TIGR03676, aRF1/eRF1, peptide chain release factor 4e-15
PRK04011411 PRK04011, PRK04011, peptide chain release factor 1 6e-10
COG1503411 COG1503, eRF1, Peptide chain release factor 1 (eRF 3e-05
>gnl|CDD|224454 COG1537, PelA, Predicted RNA-binding proteins [General function prediction only] Back     alignment and domain information 
 Score =  273 bits (701), Expect = 9e-90
 Identities = 123/371 (33%), Positives = 204/371 (54%), Gaps = 19/371 (5%)

Query: 1   MRIVRKDLIPNGPGSVKMIPVDSDDLWFAYNLVNAGDSVLAVTVRKVVRQTKSGGKDAER 60
           MRI+ +D      G +K++P   DDLW  YN++  GD V A T R+         K  ER
Sbjct: 1   MRILEEDKKR---GVIKLVPETLDDLWHLYNIIEKGDKVFAKTTRRDESSDVIRSKKGER 57

Query: 61  VKLKLEIKVEALDYDKEGSALRISGKNILENEHVKIGAFHSLEIELHRPFVLTKDVWDSV 120
           + + L IKVE +++DK  + LRI G  +   E V  G++H++ + +     + K+ W+  
Sbjct: 58  IPMTLGIKVEKIEFDKFANRLRIKGPIVEGPEEVVKGSYHTINVTIGTEIEIEKEEWNKD 117

Query: 121 ALDTLHQASDSAATADLAVVLMQEGLANIFLVGRSMTITRSRIETSIPRKHGPAVARYES 180
            L+ L +A +++   ++A+V++ EG A I +V     I   +I + IP K    +     
Sbjct: 118 QLERLKEAVEASKRPEVAIVVVDEGEAAIAIVRDYGIIILGKIRSGIPGKREGDIRAER- 176

Query: 181 ALNKFFDSVLHAFLKHVDFNVVRCAVIASPGFTKDQFHRYLLLEAERTQLRPIIANKSRI 240
              KFFD +  A  ++ + +++   ++A PGF K+ F+ +L       +  P +AN   I
Sbjct: 177 ---KFFDEIAKALKEYANLDII---IVAGPGFAKEDFYDFL------RERYPELAN---I 221

Query: 241 VIVHTSSGYKHSLREVLDASNVMNLIKETKAAQEVKVLKEFFNMLSNDPTRACYGPKHVE 300
           VI  TS+G +  + EVL    V  ++ ET+ A+E+++++EF   L+ D  +  YG + VE
Sbjct: 222 VIEDTSTGGRAGINEVLKRGAVDKILSETRIAEEIELVEEFLERLAKDDDKVAYGLEEVE 281

Query: 301 VAHERMAVQTLLITDDLFRNFEIATRKKYVDLVNSVKDSGGTAHIFSSMHFSGEQLGQLT 360
            A E  AV+TLL+TD+L R+ ++  R+   +L+  V+  GG   I S+ H  GE+L  L 
Sbjct: 282 KAAEYGAVETLLVTDELLRSDDVEEREDVEELLEEVESMGGKVVIVSTEHEPGERLKALG 341

Query: 361 GVAAILRFPLP 371
           G+AAILRFP+P
Sbjct: 342 GIAAILRFPVP 352

Length = 352
>gnl|CDD|129217 TIGR00111, pelota, mRNA surveillance protein pelota Back     alignment and domain information
>gnl|CDD|217574 pfam03463, eRF1_1, eRF1 domain 1 Back     alignment and domain information
>gnl|CDD|146221 pfam03465, eRF1_3, eRF1 domain 3 Back     alignment and domain information
>gnl|CDD|217575 pfam03464, eRF1_2, eRF1 domain 2 Back     alignment and domain information
>gnl|CDD|234307 TIGR03676, aRF1/eRF1, peptide chain release factor 1, archaeal and eukaryotic forms Back     alignment and domain information
>gnl|CDD|235198 PRK04011, PRK04011, peptide chain release factor 1; Provisional Back     alignment and domain information
>gnl|CDD|224420 COG1503, eRF1, Peptide chain release factor 1 (eRF1) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 378
KOG2869379 consensus Meiotic cell division protein Pelota/DOM 100.0
TIGR00111351 pelota probable translation factor pelota. This mo 100.0
COG1537352 PelA Predicted RNA-binding proteins [General funct 100.0
TIGR00108409 eRF peptide chain release factor eRF/aRF, subunit 100.0
TIGR03676403 aRF1/eRF1 peptide chain release factor 1, archaeal 100.0
PRK04011411 peptide chain release factor 1; Provisional 100.0
COG1503411 eRF1 Peptide chain release factor 1 (eRF1) [Transl 100.0
PF03463132 eRF1_1: eRF1 domain 1; InterPro: IPR005140 This do 100.0
KOG0688431 consensus Peptide chain release factor 1 (eRF1) [T 100.0
PF03465113 eRF1_3: eRF1 domain 3; InterPro: IPR005142 This do 99.96
PF03464133 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This do 99.93
PF10116138 Host_attach: Protein required for attachment to ho 96.68
PF0803276 SpoU_sub_bind: RNA 2'-O ribose methyltransferase s 95.92
PRK1360084 putative ribosomal protein L7Ae-like; Provisional 94.96
PRK1360282 putative ribosomal protein L7Ae-like; Provisional 94.34
PRK0668382 hypothetical protein; Provisional 93.01
PF0124895 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/G 92.96
PRK0728398 hypothetical protein; Provisional 92.65
PRK07714100 hypothetical protein; Provisional 92.22
PRK0101899 50S ribosomal protein L30e; Reviewed 91.25
PTZ00106108 60S ribosomal protein L30; Provisional 91.0
PRK04175122 rpl7ae 50S ribosomal protein L7Ae; Validated 90.91
COG1358116 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Tr 90.55
PRK1360182 putative L7Ae-like ribosomal protein; Provisional 90.07
TIGR03677117 rpl7ae 50S ribosomal protein L7Ae. Multifunctional 89.07
PRK05583104 ribosomal protein L7Ae family protein; Provisional 86.79
>KOG2869 consensus Meiotic cell division protein Pelota/DOM34 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=1.4e-104  Score=737.35  Aligned_cols=378  Identities=56%  Similarity=0.924  Sum_probs=372.3

Q ss_pred             CeeeeeecCCCCCceEEEecCChhhHHHHHHhhcCCCeEEEEEEEeEeeccCCCCcceeEEEEEEEEEEEEeeccCCCCe
Q 042331            1 MRIVRKDLIPNGPGSVKMIPVDSDDLWFAYNLVNAGDSVLAVTVRKVVRQTKSGGKDAERVKLKLEIKVEALDYDKEGSA   80 (378)
Q Consensus         1 Mki~~~~~~~~~~g~v~l~~e~~dDlw~Lynli~~gD~V~~~t~Rkv~~~~~~g~~~~~r~~~~L~i~Ve~i~~~~~~~~   80 (378)
                      ||++++++.++|+|+|+++||+.|||||+||+|++||.|+|.|.|||+.+.++|++++.|++++|+|.||+++||+.+..
T Consensus         1 MKli~K~~~rng~G~vtmvpEe~eDmw~~ynli~~gD~v~a~T~rkvq~e~a~G~~~s~rv~~~L~i~VesidfD~~~~~   80 (379)
T KOG2869|consen    1 MKLIRKDIERNGSGSVTMVPEESEDLWHLYNLIQVGDSVIASTIRKVQKEEATGKTKSSRVLLKLKIKVESIDFDTKACV   80 (379)
T ss_pred             CccchhhhhcCCCceEEECcCchhHHHHHHhhccCCceeEEEEEEEeeeccccCcccceEEEEEEEEEEEEeeccccccE
Confidence            99999999999999999999999999999999999999999999999999888988889999999999999999999999


Q ss_pred             EEEEEEEeecccccccccEEEEEEccCCcEEEEeccCChhhHHHHHHhhcccCCCcEEEEEEECCeeEEEEEecceEEEE
Q 042331           81 LRISGKNILENEHVKIGAFHSLEIELHRPFVLTKDVWDSVALDTLHQASDSAATADLAVVLMQEGLANIFLVGRSMTITR  160 (378)
Q Consensus        81 Lri~G~i~~~~~~v~~G~~ht~~l~~~~~v~i~k~~wd~~~l~~L~~a~~~~~~~~~~~vvvd~g~A~i~~l~~~~~~~~  160 (378)
                      ||++|+++.+|+||++|+||||+|+|+++|++.|.+||++.+++|++||++..++++++|++++|.|+||+++.+++...
T Consensus        81 L~~KGrti~eNe~Vk~GaYHTidlel~r~FtL~K~ewds~al~~l~~A~dp~~~ad~aaVvlqEGla~IcLvt~s~tilr  160 (379)
T KOG2869|consen   81 LRLKGRTIEENEYVKMGAYHTIDLELNRPFTLRKEEWDSMALKLLKEACDPAPSADVAAVVLQEGLAHICLVTKSSTILR  160 (379)
T ss_pred             EEEeeeeeeecccccccceeEEEeccCCceEEEhhhchHHHHHHHHHhhCcccccceeeeehhcCceeEEEechhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeecCCCCCCchhhhHHHHHHHHHHHHHHHHhcccccCccEEEEECCccCHHHHHHHHHHHHhhcccchhhccCCcE
Q 042331          161 SRIETSIPRKHGPAVARYESALNKFFDSVLHAFLKHVDFNVVRCAVIASPGFTKDQFHRYLLLEAERTQLRPIIANKSRI  240 (378)
Q Consensus       161 ~~i~~~ip~K~~~g~s~~e~~~~~f~~~v~~~l~~~~~~~~~~~iiIaGpg~~k~~f~~~l~~~~~~~~~~~~~~~~~ki  240 (378)
                      ++++.+||+||+++-|++++.+++||++|.+++.++++|+.++|+|||||||+++.|++|+.+.+.+.++|.++.++++|
T Consensus       161 ~kIe~siPrKr~~~~s~~e~~l~kfye~V~qA~~k~v~fd~vk~~vvASpgF~~~~~~d~~~q~A~~~~~k~il~nk~kf  240 (379)
T KOG2869|consen  161 AKIEVSIPRKRKGDVSQHEEGLEKFYENVVQAILKHVNFDVVKCVVVASPGFVKDQFMDYLFQQAVKLDLKLILENKSKF  240 (379)
T ss_pred             HhhhcccccccCcchhHHHHHHHHHHHHHHHHHHHhcCcceEEEEEEcCCchhHHHHHHHHHHHHHHhchhhhhhcccce
Confidence            99999999998877788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCccchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcEEECHHHHHHHHHccCccEEEEecCcccc
Q 042331          241 VIVHTSSGYKHSLREVLDASNVMNLIKETKAAQEVKVLKEFFNMLSNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRN  320 (378)
Q Consensus       241 ~~~~~s~~~~~gl~Evl~~~~v~~~l~~~~~~~e~~~l~~f~~~l~~~~~~a~yG~~~V~~A~e~GAV~tLLI~d~l~r~  320 (378)
                      ..+|+|+|+.++|+|+|.+|.+.+.++++++++|.++|++|+.+++++|++||||++||.+|.|.|||++|||+|++||+
T Consensus       241 ~~~h~ssg~~hslnevL~dp~v~~~l~dtK~~~EvkalddF~~~l~~~~drA~yG~khV~~A~e~~AI~tLLitD~lfr~  320 (379)
T KOG2869|consen  241 PLVHASSGYKHSLNEVLKDPAVASKLQDTKAAKEVKALDDFYVMLSKDPDRACYGPKHVEKANEYGAIETLLITDELFRS  320 (379)
T ss_pred             eEEecCCchHHHHHHHhcChHHHHHhhchhhHHHHHHHHHHHHHhccCccccccCHHHHHHHHhhcchhheehhhhhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHhHHHHHHHHHHHHccCCEEEEECCCCCcccccccCccEEEEeecCCCCCCCCCC
Q 042331          321 FEIATRKKYVDLVNSVKDSGGTAHIFSSMHFSGEQLGQLTGVAAILRFPLPDLEDIEM  378 (378)
Q Consensus       321 ~d~~~r~~~~~lve~v~~~g~~V~ivs~~~~~G~~L~~lgGIaAiLRy~i~~~~~~~~  378 (378)
                      +|+++|++++.|++.++.+||+|.|||+.|.+|+||.+|||||||||||+|+|||+|.
T Consensus       321 ~DV~tRkkyv~lvesVk~~~gkv~Ifss~H~SGEqL~qltGiaAiLrfp~pel~d~e~  378 (379)
T KOG2869|consen  321 QDVATRKKYVRLVESVKENNGKVFIFSSLHVSGEQLAQLTGIAAILRFPLPELDDSEG  378 (379)
T ss_pred             ccHHHHHHHHHHHHHHHhcCCcEEEEehhhccHHHHHhhcCeeEEEecCCCccccccC
Confidence            9999999999999999999999999999999999999999999999999999999874

>TIGR00111 pelota probable translation factor pelota Back     alignment and domain information
>COG1537 PelA Predicted RNA-binding proteins [General function prediction only] Back     alignment and domain information
>TIGR00108 eRF peptide chain release factor eRF/aRF, subunit 1 Back     alignment and domain information
>TIGR03676 aRF1/eRF1 peptide chain release factor 1, archaeal and eukaryotic forms Back     alignment and domain information
>PRK04011 peptide chain release factor 1; Provisional Back     alignment and domain information
>COG1503 eRF1 Peptide chain release factor 1 (eRF1) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF03463 eRF1_1: eRF1 domain 1; InterPro: IPR005140 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre Back     alignment and domain information
>KOG0688 consensus Peptide chain release factor 1 (eRF1) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF03465 eRF1_3: eRF1 domain 3; InterPro: IPR005142 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre Back     alignment and domain information
>PF03464 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre Back     alignment and domain information
>PF10116 Host_attach: Protein required for attachment to host cells; InterPro: IPR019291 Members of this family of bacterial proteins are required for the attachment of the bacterium to host cells [, ] Back     alignment and domain information
>PF08032 SpoU_sub_bind: RNA 2'-O ribose methyltransferase substrate binding; InterPro: IPR013123 Most cellular RNAs undergo a number of post-transcriptional nucleoside modifications Back     alignment and domain information
>PRK13600 putative ribosomal protein L7Ae-like; Provisional Back     alignment and domain information
>PRK13602 putative ribosomal protein L7Ae-like; Provisional Back     alignment and domain information
>PRK06683 hypothetical protein; Provisional Back     alignment and domain information
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PRK07283 hypothetical protein; Provisional Back     alignment and domain information
>PRK07714 hypothetical protein; Provisional Back     alignment and domain information
>PRK01018 50S ribosomal protein L30e; Reviewed Back     alignment and domain information
>PTZ00106 60S ribosomal protein L30; Provisional Back     alignment and domain information
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated Back     alignment and domain information
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK13601 putative L7Ae-like ribosomal protein; Provisional Back     alignment and domain information
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae Back     alignment and domain information
>PRK05583 ribosomal protein L7Ae family protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query378
3mca_B390 Structure Of The Dom34-Hbs1 Complex And Implication 2e-84
2vgm_A386 Structure Of Yeast Dom34 : A Protein Related To Tra 4e-54
2vgn_A386 Structure Of Yeast Dom34 : A Protein Related To Tra 2e-53
1x52_A124 Solution Structures Of The C-Terminal Domain Of The 1e-33
3j15_A357 Model Of Ribosome-Bound Archaeal Pelota And Abce1 L 6e-32
3oby_A352 Crystal Structure Of Archaeoglobus Fulgidus Pelota 2e-24
2qi2_A347 Crystal Structure Of The Thermoplasma Acidophilum P 3e-23
3agj_B358 Crystal Structure Of Archaeal Pelota And Gtp-bound 2e-20
3obw_A364 Crystal Structure Of Two Archaeal Pelotas Reveal In 5e-17
3agk_A373 Crystal Structure Of Archaeal Translation Terminati 9e-06
>pdb|3MCA|B Chain B, Structure Of The Dom34-Hbs1 Complex And Implications For Its Role In No-Go Decay Length = 390 Back     alignment and structure 
Iteration: 1

 Score =  309 bits (792), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 150/370 (40%), Positives = 238/370 (64%)
Query: 1   MRIVRKDLIPNGPGSVKMIPVDSDDLWFAYNLVNAGDSVLAVTVRKVVRQTKSGGKDAER 60
           M++++K++  NG G + M P + +D+W  YN++  GD + A TVR+VV+   +G     R
Sbjct: 1   MKLIQKNIEKNGSGWITMCPEEPEDMWHLYNILQVGDQLKASTVRRVVKVGATGSTSGSR 60
Query: 61  VKLKLEIKVEALDYDKEGSALRISGKNILENEHVKIGAFHSLEIELHRPFVLTKDVWDSV 120
           V +KL I VE +D+D + + L I G+    +  VK+G++H+L++ELHR F L K+ WD+ 
Sbjct: 61  VVMKLRILVENMDFDTKAAQLHIKGRTTEYHPEVKMGSYHTLDLELHRNFTLYKNEWDAF 120
Query: 121 ALDTLHQASDSAATADLAVVLMQEGLANIFLVGRSMTITRSRIETSIPRKHGPAVARYES 180
           ALD +  A + +  A++  V++ EGLANI L+   MTI R RI+  IPRK     + Y+ 
Sbjct: 121 ALDRVDAACNPSRNAEIGAVVLDEGLANICLITDYMTILRQRIDQVIPRKRRGDSSAYQK 180
Query: 181 ALNKFFDSVLHAFLKHVDFNVVRCAVIASPGFTKDQFHRYLLLEAERTQLRPIIANKSRI 240
            L+KF+DSV  +     DF+ ++  ++ASPGF     + Y+   A +  L+ I+ +K++ 
Sbjct: 181 GLDKFYDSVFQSINSEFDFDKLKVVILASPGFVARGLYDYIFSMAVKLDLKQIVKSKNKF 240
Query: 241 VIVHTSSGYKHSLREVLDASNVMNLIKETKAAQEVKVLKEFFNMLSNDPTRACYGPKHVE 300
           VI+H+S+G+ HSL E+L    V + + +TK  QE++VL +F+++++ D  +A YGP HV 
Sbjct: 241 VILHSSTGHIHSLNEILKDPAVESKLADTKYVQEIRVLNKFYDVMNEDDRKAWYGPNHVL 300
Query: 301 VAHERMAVQTLLITDDLFRNFEIATRKKYVDLVNSVKDSGGTAHIFSSMHFSGEQLGQLT 360
            A E  A+  LLI+D LFR+ +IATRKK+V LV  VK+     +IFSS+H SG+QL  L+
Sbjct: 301 KAFELGAIGELLISDSLFRSSDIATRKKWVSLVEGVKEINCPVYIFSSLHESGKQLDLLS 360
Query: 361 GVAAILRFPL 370
           G+AAIL +P+
Sbjct: 361 GIAAILTYPV 370
>pdb|2VGM|A Chain A, Structure Of Yeast Dom34 : A Protein Related To Translation Termination Factor Erf1 And Involved In No-Go Decay. Length = 386 Back     alignment and structure
>pdb|2VGN|A Chain A, Structure Of Yeast Dom34 : A Protein Related To Translation Termination Factor Erf1 And Involved In No-go Decay. Length = 386 Back     alignment and structure
>pdb|1X52|A Chain A, Solution Structures Of The C-Terminal Domain Of The Human Pelota Homolog (Cgi-17) Length = 124 Back     alignment and structure
>pdb|3J15|A Chain A, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 357 Back     alignment and structure
>pdb|3OBY|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Pelota Reveals Inter- Domain Structural Plasticity Length = 352 Back     alignment and structure
>pdb|2QI2|A Chain A, Crystal Structure Of The Thermoplasma Acidophilum Pelota Protein Length = 347 Back     alignment and structure
>pdb|3AGJ|B Chain B, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1 Alpha Complex Length = 358 Back     alignment and structure
>pdb|3OBW|A Chain A, Crystal Structure Of Two Archaeal Pelotas Reveal Inter-Domain Structural Plasticity Length = 364 Back     alignment and structure
>pdb|3AGK|A Chain A, Crystal Structure Of Archaeal Translation Termination Factor, Arf1 Length = 373 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query378
3mca_B390 Protein DOM34, elongation factor 1 alpha-like prot 1e-131
2vgn_A386 DOM34; translation termination factor, protein bio 1e-124
3agj_B358 Protein pelota homolog; GTP binding, translation-h 1e-102
3oby_A352 Protein pelota homolog; SM fold, hydrolase; 2.90A 1e-101
3obw_A364 Protein pelota homolog; SM fold, hydrolase; 2.60A 2e-99
3j15_A357 Protein pelota; ribosome recycling, ribosome, arch 6e-98
2qi2_A347 Pelota, cell division protein pelota related prote 2e-86
3agk_A373 Peptide chain release factor subunit 1; translatio 1e-47
1x52_A124 Pelota homolog, CGI-17; ERF1_3 domain, structural 5e-45
3e20_C441 Eukaryotic peptide chain release factor subunit 1; 9e-36
1dt9_A437 ERF1, protein (eukaryotic peptide chain release fa 4e-31
3ir9_A166 Peptide chain release factor subunit 1; structural 2e-19
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-08
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} Length = 390 Back     alignment and structure
 Score =  380 bits (976), Expect = e-131
 Identities = 151/377 (40%), Positives = 241/377 (63%)

Query: 1   MRIVRKDLIPNGPGSVKMIPVDSDDLWFAYNLVNAGDSVLAVTVRKVVRQTKSGGKDAER 60
           M++++K++  NG G + M P + +D+W  YN++  GD + A TVR+VV+   +G     R
Sbjct: 1   MKLIQKNIEKNGSGWITMCPEEPEDMWHLYNILQVGDQLKASTVRRVVKVGATGSTSGSR 60

Query: 61  VKLKLEIKVEALDYDKEGSALRISGKNILENEHVKIGAFHSLEIELHRPFVLTKDVWDSV 120
           V +KL I VE +D+D + + L I G+    +  VK+G++H+L++ELHR F L K+ WD+ 
Sbjct: 61  VVMKLRILVENMDFDTKAAQLHIKGRTTEYHPEVKMGSYHTLDLELHRNFTLYKNEWDAF 120

Query: 121 ALDTLHQASDSAATADLAVVLMQEGLANIFLVGRSMTITRSRIETSIPRKHGPAVARYES 180
           ALD +  A + +  A++  V++ EGLANI L+   MTI R RI+  IPRK     + Y+ 
Sbjct: 121 ALDRVDAACNPSRNAEIGAVVLDEGLANICLITDYMTILRQRIDQVIPRKRRGDSSAYQK 180

Query: 181 ALNKFFDSVLHAFLKHVDFNVVRCAVIASPGFTKDQFHRYLLLEAERTQLRPIIANKSRI 240
            L+KF+DSV  +     DF+ ++  ++ASPGF     + Y+   A +  L+ I+ +K++ 
Sbjct: 181 GLDKFYDSVFQSINSEFDFDKLKVVILASPGFVARGLYDYIFSMAVKLDLKQIVKSKNKF 240

Query: 241 VIVHTSSGYKHSLREVLDASNVMNLIKETKAAQEVKVLKEFFNMLSNDPTRACYGPKHVE 300
           VI+H+S+G+ HSL E+L    V + + +TK  QE++VL +F+++++ D  +A YGP HV 
Sbjct: 241 VILHSSTGHIHSLNEILKDPAVESKLADTKYVQEIRVLNKFYDVMNEDDRKAWYGPNHVL 300

Query: 301 VAHERMAVQTLLITDDLFRNFEIATRKKYVDLVNSVKDSGGTAHIFSSMHFSGEQLGQLT 360
            A E  A+  LLI+D LFR+ +IATRKK+V LV  VK+     +IFSS+H SG+QL  L+
Sbjct: 301 KAFELGAIGELLISDSLFRSSDIATRKKWVSLVEGVKEINCPVYIFSSLHESGKQLDLLS 360

Query: 361 GVAAILRFPLPDLEDIE 377
           G+AAIL +P+ + +  E
Sbjct: 361 GIAAILTYPVDEEDISE 377
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A* Length = 386 Back     alignment and structure
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix} Length = 358 Back     alignment and structure
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus} Length = 352 Back     alignment and structure
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus} Length = 364 Back     alignment and structure
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus} Length = 357 Back     alignment and structure
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 Length = 347 Back     alignment and structure
>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix} Length = 373 Back     alignment and structure
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2 Length = 124 Back     alignment and structure
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe} Length = 441 Back     alignment and structure
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A Length = 437 Back     alignment and structure
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei} Length = 166 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query378
3mca_B390 Protein DOM34, elongation factor 1 alpha-like prot 100.0
2vgn_A386 DOM34; translation termination factor, protein bio 100.0
3j15_A357 Protein pelota; ribosome recycling, ribosome, arch 100.0
3obw_A364 Protein pelota homolog; SM fold, hydrolase; 2.60A 100.0
3oby_A352 Protein pelota homolog; SM fold, hydrolase; 2.90A 100.0
3agj_B358 Protein pelota homolog; GTP binding, translation-h 100.0
2qi2_A347 Pelota, cell division protein pelota related prote 100.0
3e20_C441 Eukaryotic peptide chain release factor subunit 1; 100.0
1dt9_A437 ERF1, protein (eukaryotic peptide chain release fa 100.0
3agk_A373 Peptide chain release factor subunit 1; translatio 100.0
1x52_A124 Pelota homolog, CGI-17; ERF1_3 domain, structural 100.0
3ir9_A166 Peptide chain release factor subunit 1; structural 99.98
3j21_Z99 50S ribosomal protein L30E; archaea, archaeal, KIN 94.47
3v7e_A82 Ribosome-associated protein L7AE-like; RNA-protein 93.5
2aif_A135 Ribosomal protein L7A; high-mobility like protein, 93.11
3on1_A101 BH2414 protein; structural genomics, PSI-2, protei 92.87
3v7q_A101 Probable ribosomal protein YLXQ; L7AE superfamily, 92.32
3iz5_f112 60S ribosomal protein L30 (L30E); eukaryotic ribos 92.03
1xbi_A120 50S ribosomal protein L7AE; alpha-beta-alpha sandw 91.8
2ale_A134 SNU13, NHP2/L7AE family protein YEL026W; splicing, 91.23
4a18_G104 RPL30; ribosome, eukaryotic initiation factor 6, E 91.06
1w41_A101 50S ribosomal protein L30E; electrostatic interact 90.99
3u5e_c105 L32, RP73, YL38, 60S ribosomal protein L30; transl 90.94
3cpq_A110 50S ribosomal protein L30E; RNA-protein, elongatio 90.82
2lbw_A121 H/ACA ribonucleoprotein complex subunit 2; L7AE, s 89.62
2xzm_U126 Ribosomal protein L7AE containing protein; ribosom 89.5
1vq8_F120 50S ribosomal protein L7AE; ribosome 50S, protein- 88.96
3o85_A122 Ribosomal protein L7AE; alpha beta sandwich fold, 88.57
2fc3_A124 50S ribosomal protein L7AE; alpha-beta-alpha sandw 87.47
1rlg_A119 50S ribosomal protein L7AE; protein-RNA, structura 86.53
1ipa_A 274 RRMH, RNA 2'-O-ribose methyltransferase; DEEP tref 84.32
2jnb_A144 NHP2-like protein 1; splicing, KINK-turn RNA-bindi 83.64
3vi6_A125 60S ribosomal protein L30; three-layer alpha/beta/ 81.0
1gz0_A 253 Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O 80.71
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} Back     alignment and structure
Probab=100.00  E-value=3.4e-104  Score=784.10  Aligned_cols=378  Identities=40%  Similarity=0.702  Sum_probs=331.3

Q ss_pred             CeeeeeecCCCCCceEEEecCChhhHHHHHHhhcCCCeEEEEEEEeEeeccCCCCcceeEEEEEEEEEEEEeeccCCCCe
Q 042331            1 MRIVRKDLIPNGPGSVKMIPVDSDDLWFAYNLVNAGDSVLAVTVRKVVRQTKSGGKDAERVKLKLEIKVEALDYDKEGSA   80 (378)
Q Consensus         1 Mki~~~~~~~~~~g~v~l~~e~~dDlw~Lynli~~gD~V~~~t~Rkv~~~~~~g~~~~~r~~~~L~i~Ve~i~~~~~~~~   80 (378)
                      |||+++++.++++|+|+|.||++||||||||||++||.|+|+|+|||++++++|+++++|++++|+|+||+++|+|++++
T Consensus         1 Mkl~~~~~~~~~~g~v~l~pE~~dDlw~lynlI~~GD~V~a~T~Rkv~~~~~~~~~~~~r~~~~L~i~Ve~ief~~~~~~   80 (390)
T 3mca_B            1 MKLIQKNIEKNGSGWITMCPEEPEDMWHLYNILQVGDQLKASTVRRVVKVGATGSTSGSRVVMKLRILVENMDFDTKAAQ   80 (390)
T ss_dssp             -------CBCC-CBCCBC---CTHHHHHHHHHCCTTCEEBCCCCCC--------------------EECCCEEECTTSSC
T ss_pred             CccccccccCCCCceEEEEeCCHHHHHHHHHhcCCCCEEEEEEEEEEEccCCCCCCceEEEEEEEEEEEEEEEecCCCCE
Confidence            99999999999999999999999999999999999999999999999998888888999999999999999999999999


Q ss_pred             EEEEEEEeecccccccccEEEEEEccCCcEEEEeccCChhhHHHHHHhhcccCCCcEEEEEEECCeeEEEEEecceEEEE
Q 042331           81 LRISGKNILENEHVKIGAFHSLEIELHRPFVLTKDVWDSVALDTLHQASDSAATADLAVVLMQEGLANIFLVGRSMTITR  160 (378)
Q Consensus        81 Lri~G~i~~~~~~v~~G~~ht~~l~~~~~v~i~k~~wd~~~l~~L~~a~~~~~~~~~~~vvvd~g~A~i~~l~~~~~~~~  160 (378)
                      |||+|+|+.+|+++++|+|||++|+||+||+++|++||+|++++|++|++++.++.+++|+||+|.|+||+++++++.++
T Consensus        81 Lri~G~i~~~~~~vk~G~~HTl~ie~~~~i~i~K~~wd~~~le~L~ea~~~~~~~~~~~Vv~deg~A~i~ll~~~~~~~~  160 (390)
T 3mca_B           81 LHIKGRTTEYHPEVKMGSYHTLDLELHRNFTLYKNEWDAFALDRVDAACNPSRNAEIGAVVLDEGLANICLITDYMTILR  160 (390)
T ss_dssp             EEEC-CBCSCCC---CCSCCCCCCCSSSCCBCC-CCCCHHHHHHHTTSSSCC--CCEEEEEEETTEEEEEEECSSCEEEE
T ss_pred             EEEEEEEecCCccccccceEEEEEecCCcEEEEEcCCCHHHHHHHHHHhcccccCcEEEEEEECCcEEEEEEcCCEEEEE
Confidence            99999999999999999999999999999999999999999999999999988889999999999999999999999999


Q ss_pred             EEEEeecCCCCCCchhhhHHHHHHHHHHHHHHHHhcccccCccEEEEECCccCHHHHHHHHHHHHhhcccchhhccCCcE
Q 042331          161 SRIETSIPRKHGPAVARYESALNKFFDSVLHAFLKHVDFNVVRCAVIASPGFTKDQFHRYLLLEAERTQLRPIIANKSRI  240 (378)
Q Consensus       161 ~~i~~~ip~K~~~g~s~~e~~~~~f~~~v~~~l~~~~~~~~~~~iiIaGpg~~k~~f~~~l~~~~~~~~~~~~~~~~~ki  240 (378)
                      ++++.++|+||++|++++++++++||++|++++.+++++.++++||||||||+|++|++||.+++.+..++.|+.++++|
T Consensus       161 ~~i~~~iPkK~~~gg~~~~~~~~~F~~~V~e~l~~~~d~~~v~~iIlaGPgf~K~~f~~~L~~~~~~~~~k~l~~~~~k~  240 (390)
T 3mca_B          161 QRIDQVIPRKRRGDSSAYQKGLDKFYDSVFQSINSEFDFDKLKVVILASPGFVARGLYDYIFSMAVKLDLKQIVKSKNKF  240 (390)
T ss_dssp             EEEECCCCCCBTTBCHHHHHHHHHHHHHHHHHHHHHCCTTTCSEEEEEESSSHHHHHHHHHHHHHHHTTCHHHHHHGGGE
T ss_pred             EEEEEeCCCcCCCCchhHHHHHHHHHHHHHHHHHHHhcccCCcEEEEECChHHHHHHHHHHHHHHhhccchhhhhhcCeE
Confidence            99999999999886668999999999999999999999999999999999999999999999999888888888788899


Q ss_pred             EEEEcCCCccchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcEEECHHHHHHHHHccCccEEEEecCcccc
Q 042331          241 VIVHTSSGYKHSLREVLDASNVMNLIKETKAAQEVKVLKEFFNMLSNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRN  320 (378)
Q Consensus       241 ~~~~~s~~~~~gl~Evl~~~~v~~~l~~~~~~~e~~~l~~f~~~l~~~~~~a~yG~~~V~~A~e~GAV~tLLI~d~l~r~  320 (378)
                      +++++|+|+.+|++|+|++|+++++|+++++++|.++|++|++++++|+++||||+++|.+|+++|||+||||+|+++||
T Consensus       241 ~vv~~s~gg~~gl~Evl~~~~v~~~l~~~k~~~E~~lle~f~~~l~~d~g~a~YG~~eV~~Ale~GAVetLLI~d~l~r~  320 (390)
T 3mca_B          241 VILHSSTGHIHSLNEILKDPAVESKLADTKYVQEIRVLNKFYDVMNEDDRKAWYGPNHVLKAFELGAIGELLISDSLFRS  320 (390)
T ss_dssp             EEEECSCSSGGGGGTSSSCHHHHHHHTTSHHHHHHHHHHHHHHHHHHCTTSEEESHHHHHHHHHTTCBSSCEEEETTCCC
T ss_pred             EEEEcCCCcchhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHcCCCeEEEEecccccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHhHHHHHHHHHHHHccCCEEEEECCCCCcccccccCccEEEEeecCCCCCCCCCC
Q 042331          321 FEIATRKKYVDLVNSVKDSGGTAHIFSSMHFSGEQLGQLTGVAAILRFPLPDLEDIEM  378 (378)
Q Consensus       321 ~d~~~r~~~~~lve~v~~~g~~V~ivs~~~~~G~~L~~lgGIaAiLRy~i~~~~~~~~  378 (378)
                      ++++.|+++++|++.|+++||+|+|||++|++|+||++|||||||||||||+|||+|+
T Consensus       321 ~d~~~r~~~~~L~e~~~~~Gg~V~ivs~~~~~G~qL~~lgGiaAiLRy~i~~~~~~~~  378 (390)
T 3mca_B          321 SDIATRKKWVSLVEGVKEINCPVYIFSSLHESGKQLDLLSGIAAILTYPVDEEDISED  378 (390)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTCCEEEECTTSHHHHHHHHTTSEEEEBSSCCCCCCCCCC
T ss_pred             CChhHHHHHHHHHHHHHhcCCEEEEECCCCCchhhhhcCCcEEEEEeccCCccchhhh
Confidence            9999999999999999999999999999999999999999999999999999988764
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A* Back     alignment and structure
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus} Back     alignment and structure
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus} Back     alignment and structure
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix} Back     alignment and structure
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 Back     alignment and structure
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe} Back     alignment and structure
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A Back     alignment and structure
>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix} Back     alignment and structure
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2 Back     alignment and structure
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei} Back     alignment and structure
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis} Back     alignment and structure
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1 Back     alignment and structure
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans} Back     alignment and structure
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis} Back     alignment and structure
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A Back     alignment and structure
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A Back     alignment and structure
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6 Back     alignment and structure
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A Back     alignment and structure
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2 Back     alignment and structure
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii} Back     alignment and structure
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A Back     alignment and structure
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U Back     alignment and structure
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ... Back     alignment and structure
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia} Back     alignment and structure
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A Back     alignment and structure
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1 Back     alignment and structure
>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3 Back     alignment and structure
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1 Back     alignment and structure
>3vi6_A 60S ribosomal protein L30; three-layer alpha/beta/ALPA; 1.59A {Homo sapiens} PDB: 2zkr_6 1ysh_C Back     alignment and structure
>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 378
d2vgna2142 c.55.4.2 (A:136-277) Dom34 {Saccharomyces cerevisi 1e-52
d2vgna1135 b.38.4.1 (A:1-135) Dom34 {Saccharomyces cerevisiae 2e-44
d1x52a1111 d.79.3.2 (A:8-118) Cell division protein pelota {H 4e-41
d2vgna3104 d.79.3.2 (A:278-381) Dom34 {Saccharomyces cerevisi 6e-41
d2qi2a1126 b.38.4.1 (A:1-126) Cell division protein pelota {T 2e-40
d2qi2a395 d.79.3.2 (A:244-338) Cell division protein pelota 4e-30
d1dt9a2146 d.79.3.2 (A:277-422) C-terminal domain of eukaryot 8e-25
d2qi2a2117 c.55.4.2 (A:127-243) Cell division protein pelota 1e-18
d1dt9a1134 c.55.4.2 (A:143-276) Middle domain of eukaryotic p 0.004
>d2vgna2 c.55.4.2 (A:136-277) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 142 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: ERF1/Dom34 middle domain-like
domain: Dom34
species: Saccharomyces cerevisiae [TaxId: 4932]

 Score =  169 bits (429), Expect = 1e-52
 Identities = 42/137 (30%), Positives = 74/137 (54%), Gaps = 1/137 (0%)

Query: 135 ADLAVVLMQEGLANIFLVGRSMTITRSRIETSIPRKHGPA-VARYESALNKFFDSVLHAF 193
           +D A V++QEG+A++ LV  S TI + +IE S+P+K     V +++    KF+ ++  A 
Sbjct: 5   SDTAAVVLQEGIAHVCLVTSSSTILKQKIEYSMPKKKRTTDVLKFDEKTEKFYKAIYSAM 64

Query: 194 LKHVDFNVVRCAVIASPGFTKDQFHRYLLLEAERTQLRPIIANKSRIVIVHTSSGYKHSL 253
            K ++F+ ++  ++ SPGF        +   AE    + I+ NK    I H S+GY   +
Sbjct: 65  KKDLNFDKLKTIILCSPGFYAKILMDKIFQYAEEEHNKKILDNKGMFFIAHCSTGYLQGI 124

Query: 254 REVLDASNVMNLIKETK 270
            EVL      + +++TK
Sbjct: 125 NEVLKNPLYASKLQDTK 141
>d2vgna1 b.38.4.1 (A:1-135) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 135 Back     information, alignment and structure
>d1x52a1 d.79.3.2 (A:8-118) Cell division protein pelota {Human (Homo sapiens) [TaxId: 9606]} Length = 111 Back     information, alignment and structure
>d2vgna3 d.79.3.2 (A:278-381) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 104 Back     information, alignment and structure
>d2qi2a1 b.38.4.1 (A:1-126) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Length = 126 Back     information, alignment and structure
>d2qi2a3 d.79.3.2 (A:244-338) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Length = 95 Back     information, alignment and structure
>d1dt9a2 d.79.3.2 (A:277-422) C-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 146 Back     information, alignment and structure
>d2qi2a2 c.55.4.2 (A:127-243) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Length = 117 Back     information, alignment and structure
>d1dt9a1 c.55.4.2 (A:143-276) Middle domain of eukaryotic peptide chain release factor subunit 1, ERF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 134 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query378
d2vgna1135 Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} 100.0
d2qi2a1126 Cell division protein pelota {Thermoplasma acidoph 100.0
d1x52a1111 Cell division protein pelota {Human (Homo sapiens) 100.0
d2vgna3104 Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} 100.0
d2vgna2142 Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} 100.0
d2qi2a395 Cell division protein pelota {Thermoplasma acidoph 99.96
d1dt9a2146 C-terminal domain of eukaryotic peptide chain rele 99.94
d2qi2a2117 Cell division protein pelota {Thermoplasma acidoph 99.86
d1dt9a1134 Middle domain of eukaryotic peptide chain release 99.79
d1dt9a3138 N-terminal domain of eukaryotic peptide chain rele 98.13
d1t0kb_97 Eukaryotic ribosomal protein L30 (L30e) {Baker's y 93.08
d1w3ex198 Eukaryotic ribosomal protein L30 (L30e) {Archaeon 91.52
d1vqof1119 Ribosomal protein L7ae {Archaeon Haloarcula marism 91.07
d1gz0a276 RlmB, N-terminal domain {Escherichia coli [TaxId: 90.7
d1xbia1115 Ribosomal protein L7ae {Archaeon Methanococcus jan 90.36
d2bo1a1100 Eukaryotic ribosomal protein L30 (L30e) {Archaeon 90.04
d2aifa1115 Ribosomal protein L7ae {Cryptosporidium parvum [Ta 89.39
d2fc3a1124 Ribosomal protein L7ae {Aeropyrum pernix [TaxId: 5 88.53
d2alea1126 Small nuclear ribonucleoprotein-associated protein 87.4
d1rlga_113 Ribosomal protein L7ae {Archaeon Archaeoglobus ful 85.01
d2ozba1125 Spliceosomal 15.5kd protein {Human (Homo sapiens) 83.67
>d2vgna1 b.38.4.1 (A:1-135) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
class: All beta proteins
fold: Sm-like fold
superfamily: Dom34/Pelota N-terminal domain-like
family: Dom34/Pelota N-terminal domain-like
domain: Dom34
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=100.00  E-value=2.2e-40  Score=277.75  Aligned_cols=128  Identities=23%  Similarity=0.461  Sum_probs=110.4

Q ss_pred             Ceeee--eecCCCCCceEEEecCChhhHHHHHHhhcCCCeEEEEEEEeEeeccCCCCcceeEEEEEEEEEEEEeeccCCC
Q 042331            1 MRIVR--KDLIPNGPGSVKMIPVDSDDLWFAYNLVNAGDSVLAVTVRKVVRQTKSGGKDAERVKLKLEIKVEALDYDKEG   78 (378)
Q Consensus         1 Mki~~--~~~~~~~~g~v~l~~e~~dDlw~Lynli~~gD~V~~~t~Rkv~~~~~~g~~~~~r~~~~L~i~Ve~i~~~~~~   78 (378)
                      |||++  ++..++++|.|+|+||++||||||||||++||.|++.|+|+++.+  +++.+++|++++|+|+|++++||+++
T Consensus         1 Mkli~~~k~~~~~~~g~v~l~pE~~dDLW~LynlI~~GD~V~~~t~R~~~~~--~~~~~~er~~~~L~I~Ve~~ef~~~~   78 (135)
T d2vgna1           1 MKVISLKKDSFNKGGAVITLLPEDKEDLFTVYQIVDKDDELIFKKKFTSKLD--EAGKKKSTDLVKLKIKVISEDFDMKD   78 (135)
T ss_dssp             CEEEEEEECSSCTTCEEEEEECCSHHHHHHHHTTCCTTCEEEEEECC---------------CCEEEEEEEEEEEEETTT
T ss_pred             CeeEEeecccccCCceEEEEEeCCHHHHHHHHHhccCCCEEEEEEEEEEecC--CCCccEEEEEEEEEEEEEEEEeecCC
Confidence            99998  555688999999999999999999999999999999999999875  34456789999999999999999999


Q ss_pred             CeEEEEEEEeec-----ccccccccEEEEEEccCCcEEEEeccCChhhHHHHHHhhc
Q 042331           79 SALRISGKNILE-----NEHVKIGAFHSLEIELHRPFVLTKDVWDSVALDTLHQASD  130 (378)
Q Consensus        79 ~~Lri~G~i~~~-----~~~v~~G~~ht~~l~~~~~v~i~k~~wd~~~l~~L~~a~~  130 (378)
                      +.|||+|+|+.+     |++|++|+|||++|++|++|+|+|..||++++++|++||+
T Consensus        79 ~~LRi~G~iv~e~~~~~n~~v~~Gs~HTl~v~~~~~itI~K~~Wd~~~~~~L~eA~d  135 (135)
T d2vgna1          79 EYLKYKGVTVTDESGASNVDIPVGKYLSFTLDYVYPFTIIKQNFNKFMQKLLNEACN  135 (135)
T ss_dssp             TEEEEEEEECCCTTSSSSTTCCTTCEEEEECCSSSCEEEEESCCCHHHHHHHHHTTC
T ss_pred             CEEEEeeeEEecccccccccccccCcEEEEEcCCCeEEEEECCCCHHHHHHHHHhhC
Confidence            999999999987     6899999999999999999999999999999999999985
>d2qi2a1 b.38.4.1 (A:1-126) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1x52a1 d.79.3.2 (A:8-118) Cell division protein pelota {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2vgna3 d.79.3.2 (A:278-381) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d2vgna2 c.55.4.2 (A:136-277) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d2qi2a3 d.79.3.2 (A:244-338) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1dt9a2 d.79.3.2 (A:277-422) C-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2qi2a2 c.55.4.2 (A:127-243) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1dt9a1 c.55.4.2 (A:143-276) Middle domain of eukaryotic peptide chain release factor subunit 1, ERF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dt9a3 d.91.1.1 (A:5-142) N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t0kb_ d.79.3.1 (B:) Eukaryotic ribosomal protein L30 (L30e) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1w3ex1 d.79.3.1 (X:1-98) Eukaryotic ribosomal protein L30 (L30e) {Archaeon Thermococcus celer [TaxId: 2264]} Back     information, alignment and structure
>d1vqof1 d.79.3.1 (F:1-119) Ribosomal protein L7ae {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1gz0a2 d.79.3.3 (A:2-77) RlmB, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xbia1 d.79.3.1 (A:2-116) Ribosomal protein L7ae {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2bo1a1 d.79.3.1 (A:1-100) Eukaryotic ribosomal protein L30 (L30e) {Archaeon Thermococcus celer [TaxId: 2264]} Back     information, alignment and structure
>d2aifa1 d.79.3.1 (A:16-130) Ribosomal protein L7ae {Cryptosporidium parvum [TaxId: 5807]} Back     information, alignment and structure
>d2fc3a1 d.79.3.1 (A:4-127) Ribosomal protein L7ae {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d2alea1 d.79.3.1 (A:1-126) Small nuclear ribonucleoprotein-associated protein 1, Snu13p {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d1rlga_ d.79.3.1 (A:) Ribosomal protein L7ae {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2ozba1 d.79.3.1 (A:4-128) Spliceosomal 15.5kd protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure