Citrus Sinensis ID: 042334

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260------
Protein Sequence
MDSSEVKVPADIVYEIFIRLPVKSLMRFRSISKSWRDIIDGSLRFANMHMSTRLAAADEPQLLPLCNYIDAFDRKRRAALTFDGNIIKESDCPSPILDYSKRDHYYVFVEFVAYGLLLLQDCWAGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGREPRNNLEIEVYTLGTHSWRHASPSSIRLSNNKLQLQCLSEFGLSAYGDMHWKNWEFGSDHEARIISFDFKNEQLNETPLPDFRMPR
Secondary Structure (PSIPRED)
cccccccccHHHHHHHcccccHHHHHHHHcccHHHHHHHcccHHHHHHHHHHHHccccccEEEcEEcccccccccccEEEEcccccccccccccccccccccccccEEEEEEEccEEEcccEEccccEEEEEccccccEEEccccccccccccccccccEEEEEEEccccccEEEEEEEEEcccccEEEEEEccccccccccccccccccccccccccccccEEEcccEEEEEEEcccccccEEEEEEccccEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccEEEEEEEEccccEEEEEEEEccccccccccccccEccccccccEEEEEEEEcccEEEEEEEEcccccEEEEcccccccEEEEEccccccccccccccEEEEEEEEccccccEEEEEEEEcccccEEEEEEEEcccccEEEEccccccccccccccccccccEEEccEEEEEEEEccccccEEEEEEEcccccccccccccccccc
Coil and Loop (DISEMBL)
mdssevkvpadIVYEIFIRLPVKSLMRFRSISKSWRDIIDGSLRFANMHMStrlaaadepqllplcnyiDAFDRKRRAALtfdgniikesdcpspildyskrdhyYVFVEFVAYGLLLLQDCWagrnklflcnplrgevlelpkplqdcskdfllprsltsygigfdsatnSYKIVRlgreprnnlEIEVYTLgthswrhaspssirlsnnkLQLQClsefglsaygdmhwknwefgsdheARIISfdfkneqlnetplpdfrmpr
Flexible Loop (DISEMBL)
mdssevkvpadivyEIFIRLPVKSLMRFRSISKSWRDIIDGSLRFANMHMSTRlaaadepqlLPLCNYIDAFDRKRRAALtfdgniikesdcpspILDYSKRDHYYVFVEFVAYGLLLLQDCWAGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSygigfdsatnsyKIVRLGREPRNNLEIEVYTLGTHSWRHASPSSIRLSNNKLQLQCLSEFGLSAYGDMHWKNWEFGSDHEARIISFdfkneqlnetplpdfrmpr
Low Complexity Region (SEG)
MDSSEVKVPADIVYEIFIRLPVKSLMRFRSISKSWRDIIDGSLRFANMHMSTRLAAADEPQLLPLCNYIDAFDRKRRAALTFDGNIIKESDCPSPILDYSKRDHYYVFVEFVAYGLLLLQDCWAGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGREPRNNLEIEVYTLGTHSWRHASPSSIRLSNNKLQLQCLSEFGLSAYGDMHWKNWEFGSDHEARIISFDFKNEQLNETPLPDFRMPR
Disordered region (IsUnstruct)
*******VPADIVYEIFIRLPVKSLMRFRSISKSWRDIIDGSLRFANMHMSTRLAAADEPQLLPLCNYIDAFDRKRRAALTFDGNIIKESDCPSPILDYSKRDHYYVFVEFVAYGLLLLQDCWAGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGREPRNNLEIEVYTLGTHSWRHASPSSIRLSNNKLQLQCLSEFGLSAYGDMHWKNWEFGSDHEARIISFDFK****************
Disordered Region (DISOPRED)
***SEVKVPADIVYEIFIRLPVKSLMRFRSISKSWRDIIDGSLRFANMHMSTRLAAADEPQLLPLCNYIDAFDRKRRAALTFDGNIIKESDCPSPILDYSKRDHYYVFVEFVAYGLLLLQDCWAGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGREPRNNLEIEVYTLGTHSWRHASPSSIRLSNNKLQLQCLSEFGLSAYGDMHWKNWEFGSDHEARIISFDFKNEQLNETPLPDFR***
Disordered Region (DISEMBL)
MDSSEVKVPADIVYEIFIRLPVKSLMRFRSISKSWRDIIDGSLRFANMHMSTRLAAADEPQLLPLCNYIDAFDRKRRAALTFDGNIIKESDCPSPILDYSKRDHYYVFVEFVAYGLLLLQDCWAGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGREPRNNLEIEVYTLGTHSWRHASPSSIRLSNNKLQLQCLSEFGLSAYGDMHWKNWEFGSDHEARIISFDFKNEQLNETPLPDFRMPR
Disordered Region (DISPRO)
*****VKVPADIVYEIFIRLPVKSLMRFRSISKSWRDIIDGSLRFANMHMSTRLAAADEPQLLPLCNYIDAFDRKRRAALTFDGNIIKESDCPSPILDYSKRDHYYVFVEFVAYGLLLLQDCWAGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGREPRNNLEIEVYTLGTHSWRHASPSSIRLSNNKLQLQCLSEFGLSAYGDMHWKNWEFGSDHEARIISFDFKNEQLNETPLPDF****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDSSEVKVPADIVYEIFIRLPVKSLMRFRSISKSWRDIIDGSLRFANMHMSTRLAAADEPQLLPLCNYIDAFDRKRRAALTFDGNIIKESDCPSPILDYSKRDHYYVFVEFVAYGLLLLQDCWAGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGREPRNNLEIEVYTLGTHSWRHASPSSIRLSNNKLQLQCLSEFGLSAYGDMHWKNWEFGSDHEARIISFDFKNEQLNETPLPDFRMPR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	266	2.2.26 [Sep-21-2011]
Q9LJC0	367	Putative F-box protein At	yes	no	0.845	0.613	0.290	2e-13
Q8GXC7	427	F-box/kelch-repeat protei	no	no	0.902	0.562	0.273	2e-11
Q9LVS9	416	Probable F-box protein At	no	no	0.842	0.538	0.257	1e-10
Q9ZPS1	334	Putative F-box protein At	no	no	0.909	0.724	0.250	5e-10
Q9LHQ0	362	Putative F-box/kelch-repe	no	no	0.819	0.602	0.266	5e-09
Q9SAB5	363	Putative F-box/LRR-repeat	no	no	0.849	0.622	0.244	8e-09
O49421	411	F-box protein At4g19940 O	no	no	0.842	0.545	0.267	1e-08
Q9FZF8	389	Putative F-box protein At	no	no	0.815	0.557	0.258	4e-08
Q9SSQ2	423	F-box protein At1g52490 O	no	no	0.883	0.555	0.255	4e-08
Q9LTC3	362	Putative F-box protein At	no	no	0.823	0.604	0.273	2e-07

>sp|Q9LJC0|FB170_ARATH Putative F-box protein At3g21120 OS=Arabidopsis thaliana GN=At3g21120 PE=4 SV=1

 Score = 76.6 bits (187), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/272 (29%), Positives = 121/272 (44%), Gaps = 47/272 (17%)

Query: 6   VKVPADIVYEIFIRLPVKSLMRFRSISKSWRD-IIDGSLRFANMHMSTRLAAADEPQLLP 64
           + +P D+V EI  ++P  SL RFRS  + W   ++DGS  FA  H       A  P+  P
Sbjct: 1   MHLPEDLVLEILSKVPAVSLARFRSTCRRWNALVVDGS--FAKKHY------AYGPRQYP 52

Query: 65  LCNYIDAFDRKRRAALTFDGNIIKESDCPSPIL--DYSKRDHYYVFVE-------FVAYG 115
           +   +  F R    ++   G I   +  PS  L   +S +D      E       F   G
Sbjct: 53  IVIMLIEF-RVYLVSIDLHG-INNNNGAPSAKLTGQFSLKDPLSNSSEEVDIRNAFHCDG 110

Query: 116 LLLLQDCWAGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKI 175
           LLL   C     +L + NP  GE  +  +P     +  L       Y +G+D+ ++SYKI
Sbjct: 111 LLL---CCTKDRRLVVWNPCSGET-KWIQPRNSYKESDL-------YALGYDNRSSSYKI 159

Query: 176 VRLGREPRNN---LEIEVYTLGTHSWRHASPSSIRLSNNKLQLQCLSEFGLSAYGDMHW- 231
           +R+   P  N   +E EVY   +HSWR    ++         +Q    +G++  G  +W 
Sbjct: 160 LRM--HPVGNPFHIESEVYDFASHSWRSVGVTT------DFHIQTNESYGMNVKGTTYWF 211

Query: 232 ---KNWEFGSDHEARIISFDFKNEQLNETPLP 260
              K+W + SD    ++SFDF  E+    PLP
Sbjct: 212 ALSKDW-WSSDDRRFLLSFDFSRERFQCLPLP 242

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1

 Score = 69.7 bits (169), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 123/285 (43%), Gaps = 45/285 (15%)

Query: 8   VPADIVYEIFIRLPVKSLMRFRSISKSWRDIIDGSLRFANMHMSTRLAAADEPQL----- 62
           +P +I+ EI +RLP KS+ RFR +SK +   +     FA +H+   L       L     
Sbjct: 36  LPPEIITEILLRLPAKSIGRFRCVSKLFC-TLSSDPGFAKIHLDLILRNESVRSLHRKLI 94

Query: 63  -----LPLCNYIDAFDRKRRAA-------LTFDGNIIKES----------DCPSPILDYS 100
                L   ++    D  R  A       L  D +I  E           D    +L  +
Sbjct: 95  VSSHNLYSLDFNSIGDGIRDLAAVEHNYPLKDDPSIFSEMIRNYVGDHLYDDRRVMLKLN 154

Query: 101 KRDHYYVFVEFV--AYGLLLLQDCWAGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRS 158
            + +   +VE V  + GL+ +     G   +FL NP  G+   LP+  +  S ++    +
Sbjct: 155 AKSYRRNWVEIVGSSNGLVCIS---PGEGAVFLYNPTTGDSKRLPENFRPKSVEYERD-N 210

Query: 159 LTSYGIGFDSATNSYKIVRLGREPRNNLEIEVYTLGTHSWRHASPSSIRLSNNKLQLQCL 218
             +YG GFD  T+ YK+V+L     + L+  VY+L   SWR       R+ N   +    
Sbjct: 211 FQTYGFGFDGLTDDYKLVKLVATSEDILDASVYSLKADSWR-------RICNLNYEHNDG 263

Query: 219 S-EFGLSAYGDMHWKNWEFGSDHEAR-IISFDFKNEQLNETPLPD 261
           S   G+   G +HW   E  S H  R +++FD + E+  E P+PD
Sbjct: 264 SYTSGVHFNGAIHWVFTE--SRHNQRVVVAFDIQTEEFREMPVPD 306

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVS9|FB340_ARATH Probable F-box protein At5g47300 OS=Arabidopsis thaliana GN=At5g47300 PE=4 SV=1

 Score = 67.0 bits (162), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 110/260 (42%), Gaps = 36/260 (13%)

Query: 8   VPADIVYEIFIRLPVKSLMRFRSISKSWRDIIDGSLRFANMHMSTRLAAADEPQLLPLCN 67
           +P D++ EI  R+P  SL + RS  K W ++ +   RF   H+     A  + Q L L +
Sbjct: 46  LPGDLLEEILCRVPATSLKQLRSTCKQWNNLFNNG-RFTRKHLD---KAPKDFQNLMLSD 101

Query: 68  YIDAFDRKRRAALTFDGNIIKESDCPSPILD--YSKRDHYYVFVEFVAYGLLLLQDCWAG 125
                 R    +++F G    E+ C   ++D   S  D + +   F   GLLL  D  A 
Sbjct: 102 -----SRVFSMSVSFHGIPSVEATCELSLIDSFSSFEDKFEISQVFHCDGLLLCTD--AD 154

Query: 126 RNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGREPRNN 185
             ++ + NP  G+   + +P   C           SYG       NSYKI+        N
Sbjct: 155 NTRIVVWNPCTGKTRWI-EPNNRCYYYAFGSYLDKSYG-------NSYKILSYSGYGYEN 206

Query: 186 LEIEVYTLGTHSWRHASPSSIRLSNNKLQLQCLSEFGLSAYGDMHWKNWEFGSDHEAR-- 243
            E+ +Y + + SWR    +          L+  +++G+S  G  +W    F SD + +  
Sbjct: 207 QELAIYEINSQSWRFLDVT------RDCILERYTDYGVSLKGHTYW----FASDEKEKNL 256

Query: 244 ---IISFDFKNEQLNETPLP 260
              ++SFD+  E+     LP
Sbjct: 257 SVFLVSFDYTTERFRRLRLP 276

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZPS1|FB94_ARATH Putative F-box protein At2g02030 OS=Arabidopsis thaliana GN=At2g02030 PE=4 SV=1

 Score = 65.1 bits (157), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 122/283 (43%), Gaps = 41/283 (14%)

Query: 5   EVKVPADIVYEIFIRLPVKSLMRFRSISKSWRDIIDGSLRFANMHMSTRLAAADEPQLLP 64
           ++ +P +IV EI +RLPVKSL RF+++SK WR +I  S  F   HM+  L  +   +LL 
Sbjct: 36  KIHIPNEIVEEILVRLPVKSLTRFQTVSKHWRTLIT-SKYFGKRHMA--LEKSKGCKLLF 92

Query: 65  LC-NYID-AFDRKRRAALTFDGNIIKESDCPSPILDYSKRDHYYVFVEFVAY--GLLLLQ 120
           +C +++D A D      +  +   + E D      ++   + Y  F++      GL+   
Sbjct: 93  VCDDFVDRAEDTLFLKTVALEKTSVSEGD--EQAFEF---EGYKGFLDISESCDGLVCFY 147

Query: 121 DCWAGRNKLFLCNPLRGEVLELP------------------KPLQDCSKDFLLPRSLTSY 162
           D       + + NP     +ELP                  +P+QD +       + +  
Sbjct: 148 DT---TRAVEVMNPATTMFIELPLSRIQQLCIYKPNPEVELEPVQDPNPVLDPVMTCSQI 204

Query: 163 GIGFDSATNSYKIVRL-GREPRNNLEIEVYTLGTHSWRHASPSSIRLSNNKLQLQCLSEF 221
           G+G DS + SYK+V +    P      EV  L    WR  + +S+    +  Q+ C  + 
Sbjct: 205 GVGKDSVSGSYKLVWMYNTSPATPPTCEVLDLDGKKWRFVNTTSL----DHHQILC-DQR 259

Query: 222 GLSAYGDMHW--KNWEFGSDHEARIISFDFKNEQLNETPLPDF 262
            + A G ++W   + E  +  + ++I  D   E       P F
Sbjct: 260 PVFANGSLYWLTGDEEGYATTQTKLIVLDLHTEMFQVIQTPPF 302

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LHQ0|FBK64_ARATH Putative F-box/kelch-repeat protein At3g20710 OS=Arabidopsis thaliana GN=At3g20710 PE=4 SV=1

 Score = 61.6 bits (148), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 120/263 (45%), Gaps = 45/263 (17%)

Query: 8   VPADIVYEIFIRLPVKSLMRFRSISKSWRDIIDGSLRFANMHMSTRLAAADEPQLLPLCN 67
           +P D+V EI  R+P K L   RS  K+W D +  +  FAN ++  + A + E + L +  
Sbjct: 6   LPKDLVEEILSRVPFKYLRAIRSTCKNWYD-LSKNRSFANKNID-KAAVSGEKEFLMITQ 63

Query: 68  ---YIDAFDRKRRAALTFDGNIIKESDCPSPILDYSKRDHYYVFVEFVAYGLLLLQDCWA 124
              +    +  R    +FD +I       + I+   K+D  +   + +         C  
Sbjct: 64  FNVFWVGVNLHRSQNNSFDLSI----QLKAKIVSRDKKDDLFQKSQVI--------HC-- 109

Query: 125 GRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPR----SLTSYGIGFDSATNSYKIVRLGR 180
             N +FLC  +R ++L +  P    +K  ++PR        Y +G+D ++ S+KI+RL  
Sbjct: 110 --NGVFLC--VREKMLVVLNPYWGQTKR-IMPRPPFGCFDRYALGYDKSSGSHKILRLFG 164

Query: 181 EPRNNLEIEVYTLGTHSWRHASPSSIRLSNNKLQLQCLSEFGLSAYGDMHWKNWEFGSDH 240
             +NNL I  Y L + SW     +  R       ++ + + G+S  GD +W    +  D 
Sbjct: 165 VNQNNLNI--YDLSSSSWMIPDGTLER------DMEYMKQ-GVSLNGDTYW----YAKDK 211

Query: 241 EA---RIISFDFKNEQLNETPLP 260
           E+    ++ FDF  E+   TPLP
Sbjct: 212 ESIDWYLLCFDFTRERFG-TPLP 233

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SAB5|FBLK2_ARATH Putative F-box/LRR-repeat/kelch-repeat protein At1g11620 OS=Arabidopsis thaliana GN=At1g11620 PE=4 SV=1

 Score = 61.2 bits (147), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 108/270 (40%), Gaps = 44/270 (16%)

Query: 4   SEVKVPADIVYEIFIRLPVKSLMRFRSISKSWRDIIDGSLRFANMHMSTRLAAADEPQLL 63
           + + + +D+V EI  R+P +SL+R RS  K W  +I    RF N H+S       +  + 
Sbjct: 2   ATMDLSSDLVEEILSRVPARSLVRLRSTCKQWEALI-AEPRFVNKHLSHMRYREQQFTVF 60

Query: 64  PLCNYIDAFDRKRRAALTFDGNIIKESDCP---------SPILDYSKRDHYYVFVEFVAY 114
              + +        + +  D N  K  +C          SP ++ S  D           
Sbjct: 61  NNEHIVSPLFGSTTSYVGIDFN--KPENCGVKLPFPIALSPAINISHCD----------- 107

Query: 115 GLLLLQDCWAGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGF----DSAT 170
           GLLL    +  ++ L + NPL  +     K    CS+ F    S+ +YG+G+     S  
Sbjct: 108 GLLL----YVTKSMLLVANPLLSQ-----KRWIKCSEGF--DHSMDAYGLGYLFNQSSGF 156

Query: 171 NSYKIVRLGREPRNNLEIEVYTLGTHSWRHASPSSIRLSNNKLQLQCLSEFGLSAYGDMH 230
             YK+VR     +N+  +EVY   + SW+      + +  N      L    +   G  +
Sbjct: 157 YDYKVVRFRCGIKNSSRVEVYAFKSDSWK------VVVDTNFGGFDGLPLSSVCLRGTPY 210

Query: 231 WKNWEFGSDHEARIISFDFKNEQLNETPLP 260
           W  +    +    I SFDF  E+     LP
Sbjct: 211 WLGYNKSGNELMSIQSFDFSKERFEPLFLP 240

Arabidopsis thaliana (taxid: 3702)

>sp|O49421|FB238_ARATH F-box protein At4g19940 OS=Arabidopsis thaliana GN=At4g19940 PE=4 SV=1

 Score = 60.5 bits (145), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 109/277 (39%), Gaps = 53/277 (19%)

Query: 7   KVPADIVYEIFIRLPVKSLMRFRSISKSWRDIIDGSLRFANMHMSTRLAAADEPQLLPLC 66
           ++P D+V EI  RLP KSLMRF+S+SK W  +I  S  F N     RL     P  L +C
Sbjct: 34  EIPFDLVIEILTRLPAKSLMRFKSVSKLWSSLI-CSRNFTN-----RLLKLSSPPRLFMC 87

Query: 67  NYIDAFDRKRRAALTF----DGNIIKESDCPSPILDYSKRDHYYVFVEFVAYGLLLLQDC 122
                    +   L+     D +I   S      L       Y   +  V  GL+    C
Sbjct: 88  LSSSDNSHLKTVLLSLSSPPDSDITMSSSVIDQDLTMPGMKGYQ--ISHVFRGLM----C 141

Query: 123 WAGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTS----YGIGFDSATNSYKIVRL 178
              ++   + N    +++ LP    D  +  +L     S    Y IG D   + YK+V +
Sbjct: 142 LVKKSSAQIYNTTTRQLVVLP----DIEESTILAEEHKSKKIMYHIGHDPVYDQYKVVCI 197

Query: 179 GREPRNNLEIEVYTL------------GTHSWRHAS---PSSIRLSNNKLQLQCLSEFGL 223
               R + E+E YT             G+  WR  S   P  + L             GL
Sbjct: 198 --VSRASDEVEEYTFLSEHWVLLLEGEGSRRWRKISCKYPPHVPLGQ-----------GL 244

Query: 224 SAYGDMHWKNWEFGSDHEARIISFDFKNEQLNETPLP 260
           +  G MH+  W   SD+   +I FD  +E+ +   +P
Sbjct: 245 TLSGRMHYLAWVRVSDNRVLVI-FDTHSEEFSMLQVP 280

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FZF8|FB44_ARATH Putative F-box protein At1g47790 OS=Arabidopsis thaliana GN=At1g47790 PE=4 SV=1

 Score = 58.9 bits (141), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 107/263 (40%), Gaps = 46/263 (17%)

Query: 9   PADIVYEIFIRLPVKSLMRFRSISKSWRDIIDGS--LRFANMHMSTR------LAAADEP 60
           P D+  EI +RLPVKS++RFR +SK W  II     ++      STR         +D+ 
Sbjct: 26  PLDLASEILLRLPVKSVVRFRCVSKLWSSIITDPYFIKTYETQSSTRQSLLFCFKQSDKL 85

Query: 61  QLLPL-CNYIDAFDRKRRAALTFDGNIIKESDCPSPILDYSKRDHYYVFVEFVAYGLLLL 119
            +  +  ++ D+    + A   F   + +E   PSP                  +GL+  
Sbjct: 86  FVFSIPKHHYDSNSSSQAAIDRFQVKLPQEFSYPSPTES--------------VHGLI-- 129

Query: 120 QDCWAGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLG 179
             C+     + + NP   + L LPKP +         + LT + +G+D     +K+V L 
Sbjct: 130 --CFHVLATVIVWNPSMRQFLTLPKPRKSW-------KELTVF-LGYDPIEGKHKVVCLP 179

Query: 180 REPRNNLEIEVYTLGT--HSWRHASPSSIRLSNNKLQLQCLSEFGLSAYGDMHWKNWEFG 237
           R  R   E +V TLG+   SWR         S N    +C+           H + W   
Sbjct: 180 RN-RTCDECQVLTLGSAQKSWRTVKTKHKHRSTNDTWGRCIKGVVYYIAYVYHTRVW--- 235

Query: 238 SDHEARIISFDFKNEQLNETPLP 260
                 I+SF  K+E+ +   LP
Sbjct: 236 -----CIMSFHVKSEKFDMIKLP 253

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SSQ2|FB55_ARATH F-box protein At1g52490 OS=Arabidopsis thaliana GN=At1g52490 PE=4 SV=1

 Score = 58.5 bits (140), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 108/266 (40%), Gaps = 31/266 (11%)

Query: 5   EVKVPADIVYEIFIRLPVKSLMRFRSISKSWRDIIDGSLRFANMHMSTRLAAADEPQLLP 64
           +V +P D++ EI  +LP KSLMRFR +SK W  II     F    M+  L     P  LP
Sbjct: 52  DVHLPLDLIVEILKKLPTKSLMRFRCVSKPWSFIISKRRDFVESIMARSLRQP--PHKLP 109

Query: 65  LCNYIDAFDRKRRAALTFDGNIIKESDCPSPILDYSKRDHYYVFVEFVAYGLLLLQDCWA 124
               +  F +          +   +S  P  +     R+HY  F      G +      +
Sbjct: 110 ----VFIFHQCDPGTFFTVSSTFSQSTKPK-VSIMPGRNHYNAFRYQYVRGFICCSS--S 162

Query: 125 GRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGREPRN 184
             + + + NP   + L LPK         L P+       G+D   N YK++ +  + + 
Sbjct: 163 VYDLVTIYNPTTRQCLPLPK----IESMVLSPKRHKHCYFGYDHVMNEYKVLAMVNDSQE 218

Query: 185 NLE-IEVYTLG--THSWRHASPSSIRLSNNKLQLQCLSEFGLSAYGDMHW------KNWE 235
             +   V+TLG     WR      IR  N   +L  +S  G+   G +++       N  
Sbjct: 219 LTQTFHVFTLGRDCPQWR-----KIR-GNIDYELISVSRAGVCIDGTIYYVAVRRKDNEN 272

Query: 236 FGSDHEARIISFDFKNEQLNETPLPD 261
           +G   E  ++SFD K+E+      P+
Sbjct: 273 YG---ELFMMSFDVKSERFYHVRTPE 295

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LTC3|FB179_ARATH Putative F-box protein At3g23260 OS=Arabidopsis thaliana GN=At3g23260 PE=2 SV=1

 Score = 57.0 bits (136), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 112/267 (41%), Gaps = 48/267 (17%)

Query: 8   VPADIVYEIFIRLPVKSLMRFRSISKSWRDIIDGSLRFANMHMSTRLAAADEPQLLPLCN 67
           +P ++  EI  R+P K L R RS SK W + +  +  FA  H +    A  EP ++ L +
Sbjct: 6   LPVELQEEILSRVPAKYLARLRSTSKQW-NALSKTGSFAKKHSAN---ATKEPLIIMLKD 61

Query: 68  YIDAFDRKRRAALTFDG---NIIKESDCPSPILDYSKRDHYYVFVEFVAYGLLLLQDCWA 124
                 R   A++   G   N+ +  +  S +  Y K  H  +   F   GLLLL  C  
Sbjct: 62  -----SRVYLASVNLHGVHNNVAQSFELGSRL--YLKDPH--ISNVFHCDGLLLL--CSI 110

Query: 125 GRNKLFLCNPLRGEVLELPKPLQDCSK--DFLLPRSLTSYGIGFD--SATNSYKIVRLGR 180
             N L + NP  GE  +L KP     K  DF        Y +G+D  S+   YK++R+  
Sbjct: 111 KENTLEVWNPCSGEA-KLIKPRHSYYKESDF--------YALGYDNKSSCKKYKVLRVIS 161

Query: 181 EPRNN----LEIEVYTLGTHSWRHASPSSIRLSNNKLQLQCLSEFGLSAYGDMHW--KNW 234
           +        +E E+Y     SWR    ++        +L    +  +S  G  +W  +N 
Sbjct: 162 QVHVQGDFKIEYEIYDFTNDSWRVHGATT--------ELSIRQKHPVSVKGSTYWVVRNR 213

Query: 235 EFGSDHEARIISFDFKNEQLNETPLPD 261
            F   +    +SFDF  E+     LP 
Sbjct: 214 YFPYKY---FLSFDFSTERFQSLSLPQ 237

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	266
357455641	412	F-box protein [Medicago truncatula] gi|3	0.894	0.577	0.287	7e-14
224060347	372	predicted protein [Populus trichocarpa]	0.883	0.631	0.295	2e-13
224064862	408	f-box family protein [Populus trichocarp	0.853	0.556	0.279	7e-13
225433770	360	PREDICTED: F-box/kelch-repeat protein At	0.815	0.602	0.280	1e-12
357448235	704	F-box protein [Medicago truncatula] gi|3	0.887	0.335	0.289	1e-12
224129122	422	f-box family protein [Populus trichocarp	0.875	0.552	0.258	2e-12
224060349	364	predicted protein [Populus trichocarpa]	0.853	0.623	0.294	2e-12
148923044	388	class S F-box protein [Nicotiana alata]	0.913	0.626	0.305	3e-12
242038689	810	hypothetical protein SORBIDRAFT_01g01322	0.830	0.272	0.275	6e-12
357458701	350	F-box [Medicago truncatula] gi|357458723	0.789	0.6	0.294	6e-12

>gi|357455641|ref|XP_003598101.1| F-box protein [Medicago truncatula] gi|355487149|gb|AES68352.1| F-box protein [Medicago truncatula]

 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 78/271 (28%), Positives = 126/271 (46%), Gaps = 33/271 (12%)

Query: 8   VPADIVYEIFIRLPVKSLMRFRSISKSWRDIIDGSLRFANMHMSTRLAAADEPQLLPLCN 67
           +P D+V EI  RL VK L++ R + KSW  +I  S  FA  H  T   +A    +  L +
Sbjct: 47  LPFDLVSEILCRLQVKLLLQLRCVCKSWNSLISDS-NFAKKHNRT---SAPTRLVHTLTD 102

Query: 68  YIDAFDRKRRAALTFD--------GNIIKESDCPSPILDYSKRDHYYVFVEFVAYGLLLL 119
            +   DR    +  F          +++   +  +  LD    +  + FV      L LL
Sbjct: 103 RVTISDRVIYDSYEFKYVLKSYTFESVLTNKNIKATELDLPGANRAF-FVGSCNGILCLL 161

Query: 120 QDCWAGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLG 179
              + G   + LCNP   +  +LP PL++ S   +    LT YG G D+ +++YKIV  G
Sbjct: 162 AIVYGGDWNVRLCNPSIRKFKDLP-PLEELSTSNI--NKLTMYGFGHDTVSDNYKIVIGG 218

Query: 180 -REPRNNL----EIEVYTLGTHSWRHASPSSIRLSNNKLQLQC--LSEFGLSAYGDMHW- 231
            R+ R NL    +++VYT GT+ W++           K  + C  + E G    G M+W 
Sbjct: 219 ARDIRCNLVSETDVKVYTSGTNFWKNI---------QKFPIDCVVVQETGKFVSGTMNWL 269

Query: 232 KNWEFGSDHEARIISFDFKNEQLNETPLPDF 262
            + ++   ++  ++S D +NE   E  LPD+
Sbjct: 270 VSKDYARKNQYFVVSLDLRNESYQEVLLPDY 300

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060347|ref|XP_002300154.1| predicted protein [Populus trichocarpa] gi|222847412|gb|EEE84959.1| predicted protein [Populus trichocarpa]

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/261 (29%), Positives = 116/261 (44%), Gaps = 26/261 (9%)

Query: 7   KVPADIVYEIFIRLPVKSLMRFRSISKSWRDIIDGSLRFANMHMST-RLAAADEPQLLPL 65
           K+P DI+ +I   LPVKSL+RF+ + K W  +I    +F   H+ T R   +++ Q L L
Sbjct: 3   KLPQDIMVDILTYLPVKSLLRFKCVCKLWHSLISDP-KFVKSHLKTAREVNSNKSQRLLL 61

Query: 66  CNYIDAFDRKRRAALTFDGNIIKESDCPSPILDYSKRDHYYVFVEFVAYGLLLLQDCWAG 125
                       A+   + N ++E + P  +        Y++ +     GL+ L   +  
Sbjct: 62  STRTPQSVDFEAASEGDEDNAVQELEYPDVV---RCSPTYFIGIMGSCDGLICL---FVD 115

Query: 126 RNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIV---RLGREP 182
             KL L NP   +  E+PKP  D   DF         GIG+DS+ + YK V       + 
Sbjct: 116 YAKLVLWNPSTRDYKEMPKPSCDHGFDFFA-------GIGYDSSNDDYKFVIPSCTTADG 168

Query: 183 RNNLEIEVYTLGTHSWRHASPSSIRLSNNKLQLQCLSEFGLSAYGDMHW-KNWEFGSDHE 241
              + +EV TL T+ WR   P   + +      +     GL   G +HW    E GS+ E
Sbjct: 169 SEQIMVEVLTLKTNVWRKV-PEICQGTTLVGAYR-----GLFCNGAVHWLGKQENGSEKE 222

Query: 242 ARIISFDFKNEQLNE-TPLPD 261
              +SFD   E+  E  PLPD
Sbjct: 223 YVAVSFDVAEERFKEVVPLPD 243

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224064862|ref|XP_002301588.1| f-box family protein [Populus trichocarpa] gi|222843314|gb|EEE80861.1| f-box family protein [Populus trichocarpa]

 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 122/272 (44%), Gaps = 45/272 (16%)

Query: 8   VPADIVYEIFIRLPVKSLMRFRSISKSWRDI-IDGSLRFANMHMSTRLAAADEPQLL--- 63
           +P +I  +I  RLP+ SL++F+ + ++WR + +D  +   N+++S      D   +L   
Sbjct: 28  LPREIAQDILSRLPITSLVKFKCVCRAWRAMALDPEV--VNLYLSCSTQETDPCVILHCD 85

Query: 64  -PLCNYIDAFDRKRRAALTFDGNIIKESDCPSPILDYSKRDHYYVFVEFVAYGLLLLQDC 122
            P+ N +   D    AA   +   +K    P     +S     +  V     GLL L D 
Sbjct: 86  FPIRNNLYFVDF---AAHEEEKEKVKRIRAP-----FSSMMPEFEVVG-SCNGLLCLSDS 136

Query: 123 WAGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRL---- 178
               + L++ NP  G   ELPK LQ        P     +G GF+  TN YK++R+    
Sbjct: 137 LFN-DSLYIYNPFTGRYKELPKSLQ-------YPDQEVVFGFGFNPKTNEYKVIRIVYYR 188

Query: 179 ---GREPRNNL------EIEVYTLGTHSWRHASPSSIRLSNNKLQLQCLSEFGLSAYGDM 229
              GR PR+        ++++ TLG   WR     S RL      ++  SE  ++  G +
Sbjct: 189 NGHGRYPRSRRIIYPLSQVQILTLGCPGWRSLGKVSYRL------VRRASETLVN--GRL 240

Query: 230 HWKNWEFGSDHEARIISFDFKNEQLNETPLPD 261
           HW +    +    R++SFD  +EQ  E P PD
Sbjct: 241 HWVSRPCRNKPARRLVSFDLTDEQFREVPKPD 272

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433770|ref|XP_002268486.1| PREDICTED: F-box/kelch-repeat protein At3g06240-like [Vitis vinifera]

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 113/267 (42%), Gaps = 50/267 (18%)

Query: 8   VPADIVYEIFIRLPVKSLMRFRSISKSWRDIIDGSLRFANMHMSTRLAAADEPQLLPLCN 67
           +P +I+  I +RLPVKSL+RFR + K+WR +I  S  FA MH         +PQ      
Sbjct: 4   LPDEIIENILLRLPVKSLLRFRCVCKAWRALISDS-EFAEMHYQ-------QPQT----- 50

Query: 68  YIDAFDRKRRAALTFDGNIIKESDCPSPI--------LDYSKRDHYYVF-VEFVAYGLLL 118
                  + R  ++  G +I+  D  +          +DY       VF +     GLL 
Sbjct: 51  -----QARSRVLISCPGRVIRSMDPDASGNDNSGVVNIDYPLEPSNLVFQILDSCDGLLC 105

Query: 119 LQDCWAGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRL 178
           + D +   +   L NP   +   LPKP         L  S   YG  +D +++ YKIVR+
Sbjct: 106 VIDSF---HNPALWNPSTRQFNPLPKPS-------FLENSDILYGFTYDYSSDDYKIVRV 155

Query: 179 GREPRNNL--EIEVYTLGTHSWRHASPSSIRLSNNKLQLQCLSEFGLSAYGDMHWKNWEF 236
               R+ +  EI+V+ L T+ WR    +           +   + G    G  +W  W  
Sbjct: 156 VSTSRDVIKTEIDVFELKTNEWRRVEETHYS--------RPAWDVGTFLNGAFYWLAWRL 207

Query: 237 GSDHEA---RIISFDFKNEQLNETPLP 260
              HE     ++SFD K E+  E  LP
Sbjct: 208 SEGHEGFSRVVVSFDLKEERFKEVELP 234

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357448235|ref|XP_003594393.1| F-box protein [Medicago truncatula] gi|355483441|gb|AES64644.1| F-box protein [Medicago truncatula]

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 127/280 (45%), Gaps = 44/280 (15%)

Query: 6   VKVPADIVYEIFIRLPVKSLMRFRSISKSWRDIIDGSLRFANMHMSTRLAAADEPQLLPL 65
            ++P DI+ EIF RLPVKSL+RFRS SKS + +ID SL+F N+H+   L        L L
Sbjct: 3   AELPPDILAEIFSRLPVKSLLRFRSTSKSLKSLID-SLKFINLHLKNSLNFN-----LIL 56

Query: 66  CNYIDAFDRKRRAALT---------FDGNIIKESDCPSPILDYSKRDHYYVFVEFVAY-- 114
            +    F +     LT         F  NI   +  P+ +L  SK          +A   
Sbjct: 57  RHNTTDFYQLHFPNLTKSIIPLNYPFTTNIDPSTRSPTDLLRNSKMSLIGSCNGLLAIST 116

Query: 115 GLLLLQDCWAGRNKLFLCNPLRGE-----VLELPKPLQDCSKDFLLPRSLTSYGIGFDSA 169
           G+++        N++ + NP   +      L LP P+ +         SL  +G GFD  
Sbjct: 117 GVIVFTHP-NNLNEITIWNPNTRKHHIIPFLPLPIPILNYDDKC----SLCVHGFGFDQI 171

Query: 170 TNSYKIVRLG-----REPRNNLEIEVYTLGTHSWR--HASPSSIRLSNNKLQLQCLSEFG 222
           +  YK++R+      + P  + ++ +++L T+SW+   A P           LQ L + G
Sbjct: 172 SGDYKLLRISHLLDLQNPFYDPQVRLFSLKTNSWKIIPAMP---------YDLQHLYDLG 222

Query: 223 LSAYGDMHW-KNWEFGSDHEARIISFDFKNEQLNETPLPD 261
           +     +HW    +    H + I++F+   E  NE PLPD
Sbjct: 223 VFVENSIHWIMTKKLDGLHPSLIVAFNLTLEIFNEVPLPD 262

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129122|ref|XP_002320506.1| f-box family protein [Populus trichocarpa] gi|222861279|gb|EEE98821.1| f-box family protein [Populus trichocarpa]

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 111/267 (41%), Gaps = 34/267 (12%)

Query: 8   VPADIVYEIFIRLPVKSLMRFRSISKSWRDIIDGSLRFANMHMSTRLAAADEPQLLPLCN 67
           +P +I ++I  RLP+ SL++F+ + ++WR ++    +  ++++S      D P L+  C+
Sbjct: 28  LPREIAHDILSRLPITSLVQFKCVCRAWRALVQDP-QLVDLYLSCSTQDTDHPCLILHCD 86

Query: 68  YIDAFDRKRRAALTFDGNIIKESDCPSPILDYSKRDHYYVFVEFVAYGLLLLQDCWAGRN 127
           +    +         +    K    P+P    S    + V       GLL L D     +
Sbjct: 87  FPIRNNLYFVDFAAHEEEKEKVKRIPAPF--SSMMPEFEVVGS--CNGLLCLSDSLYN-D 141

Query: 128 KLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRL-------GR 180
            L++ NP  G   ELPK LQ        P      G GF+  T  YK++R+       G 
Sbjct: 142 SLYIYNPFTGCYKELPKSLQ-------YPDQEVVSGFGFNPKTKEYKVIRIVYYRNGHGG 194

Query: 181 EPRNNL------EIEVYTLGTHSWRHASPSSIRLSNNKLQLQCLSEFGLSAYGDMHWKNW 234
            PR+        E+++ TLG   WR     S RL             G    G +HW + 
Sbjct: 195 YPRSRRIIYPLSEVQILTLGCPEWRSLGKVSYRLVRRA--------SGALVNGRLHWISR 246

Query: 235 EFGSDHEARIISFDFKNEQLNETPLPD 261
              +    R++SFD  +EQ  E   PD
Sbjct: 247 PCRNKPARRLVSFDLTDEQFREVSKPD 273

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060349|ref|XP_002300155.1| predicted protein [Populus trichocarpa] gi|222847413|gb|EEE84960.1| predicted protein [Populus trichocarpa]

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 81/275 (29%), Positives = 120/275 (43%), Gaps = 48/275 (17%)

Query: 7   KVPADIVYEIFIRLPVKSLMRFRSISKSWRDIIDGSLRFANMHMS----------TRLAA 56
           K+P DI+ +I   LPVKSL+RF+ + K W+ +I    RF  +H+            RL  
Sbjct: 3   KLPQDIIVDILTYLPVKSLVRFKCVCKPWQLLISDP-RFVKLHLKRAIEGNNINRQRLLV 61

Query: 57  ADEPQLLPLCNYIDAFDRKRRAALTFDG-NIIKESDCPSPILDYSKRDHYYVFVEFVAY- 114
           A E    PL + +D       AA   DG N + E   PS     + R   + F       
Sbjct: 62  AAE----PLYSSVDF-----EAASDGDGINAVMELPYPSA----ASRTESFAFASIRGSC 108

Query: 115 -GLLLLQDCWAGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSY 173
            GL+ +++     + +FL NP   E  +LPKP     K   L       G+G+DS  + Y
Sbjct: 109 DGLVCIRNG-GDVHDMFLWNPSTRESKKLPKPSSSVQKHGFLT------GLGYDSTIDDY 161

Query: 174 KIVRLGREPRNN----LEIEVYTLGTHSWRHASPSSIRLSNNKLQLQCLSEFGLSAYGDM 229
           K+V       N     +  EV+TL T+SWR       R+      +      G+   G +
Sbjct: 162 KLVIACLTTANGSHQIMAPEVFTLKTNSWR-------RIQGIHSGITLEGGAGVFWNGAL 214

Query: 230 HW-KNWEFGSDHEARII-SFDFKNEQ-LNETPLPD 261
           HW    E G+DH+  +I S D   E+ +   PLP+
Sbjct: 215 HWLGKQETGADHDVDVIFSLDVAQEKFMGFVPLPN 249

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148923044|gb|ABR18786.1| class S F-box protein [Nicotiana alata]

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 85/278 (30%), Positives = 121/278 (43%), Gaps = 35/278 (12%)

Query: 1   MDSSEVKVPADIVYEIFIRLPVKSLMRFRSISKSWRDIIDGSLRFANMHMSTRLAAADEP 60
           +D    K+P D+V  I  R  VKSL+RF+ ISKSW  +I  S  F N+H++      +E 
Sbjct: 3   LDGIMKKLPEDVVIYILSRFSVKSLLRFKFISKSWYTLIQSS-TFINVHLNRSTITKNEF 61

Query: 61  QLLPLCNYIDAFDRKRRAALTF-----DGNIIKESDCPSPILDYSKRDHYYVFVEFVA-- 113
            L      I+    K   ++       D N++ + D   P L ++   H   F E V   
Sbjct: 62  ILFSRSFRIETEGFKNVLSIISSDDYNDLNVVLQ-DLDLPYLTFTPNYH---FNELVGPC 117

Query: 114 YGLLLLQDCWAGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRS-LTSYGIGFDSATNS 172
            GL++L D     + + L NP     + LP     CSK +   RS +   G GFDS  N 
Sbjct: 118 NGLIVLTD---DDDIIVLFNPATKNYMLLPPSPFVCSKGY--HRSFIGGVGFGFDSIGND 172

Query: 173 YKIVRL---------GREPRNNLEIEVYTLGTHSWRHASPSSIRLSNNKLQLQCLSEFGL 223
           YK VR+         G E R   ++EVY L + SWR  +    +L       QC   F +
Sbjct: 173 YKFVRISEVFLDTYWGPEEREQ-KVEVYDLRSDSWRDLNHVDQQLP-TIFWNQC---FEM 227

Query: 224 SAYGDMHWKNWEFGSDHEARIISFDFKNEQLNETPLPD 261
              G  HW  +  G D    I+ FDF  E      +P+
Sbjct: 228 LHNGAFHW--YAVG-DLTYEILCFDFSTEIFRSMKMPE 262

Source: Nicotiana alata

Species: Nicotiana alata

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242038689|ref|XP_002466739.1| hypothetical protein SORBIDRAFT_01g013220 [Sorghum bicolor] gi|241920593|gb|EER93737.1| hypothetical protein SORBIDRAFT_01g013220 [Sorghum bicolor]

 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 123/265 (46%), Gaps = 44/265 (16%)

Query: 3   SSEVKVPADIVYEIFIRLPVKSLMRFRSISKSWRDIIDGSLRFANMHMSTRLAAADEPQL 62
           ++   +P +IV EI  RLP KSL RF+ +S+SW  +I  S  F  +H S R   A +P+ 
Sbjct: 56  TAASALPDEIVEEILARLPAKSLRRFQCVSRSWHGLIT-SPPFRQLHSSRR---ASQPRG 111

Query: 63  LPL--CNYIDAFDRKRRAALTFDGNIIKESDCPSPIL-------DYSKRDHYYVFVEFVA 113
           L +    Y+ +F   R+              CP P +       D++  D + +  +   
Sbjct: 112 LFVRPAGYVGSFHACRQLG------------CPDPAVEEILSFADFAPGDVFPI-NKSCC 158

Query: 114 YGLLLLQDCWAGRNKLFLCNPLRGEVLELP--KPLQDCSKDFLLPRSLTSYGIGFDSATN 171
           +GL+LL  C    +  ++ NP   ++L LP   P +       +     SYG+G  S T+
Sbjct: 159 HGLVLL--CSLDYSAHYVWNPSTADILPLPDRTPFRTAG---YMAHPFVSYGLGHCSTTD 213

Query: 172 SYKIVRLGREPRNNLEIEVYTLGTHS-WRHASPSSIRLSNNKLQLQCLSEFGLSAYGDMH 230
            YK+VR+    RN +  EV+TL   + WR A+    +    +L+   +S+ G+   G +H
Sbjct: 214 QYKVVRMYCH-RNAMFCEVFTLDQSTYWRPAATEPPQCHRLRLR---ISQGGVFCNGSLH 269

Query: 231 WKNWEFGSDHEARIISFDFKNEQLN 255
           +        H+  II+F+  +E   
Sbjct: 270 FVA------HDGVIIAFNVDDETFG 288

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357458701|ref|XP_003599631.1| F-box [Medicago truncatula] gi|357458723|ref|XP_003599642.1| F-box [Medicago truncatula] gi|355488679|gb|AES69882.1| F-box [Medicago truncatula] gi|355488690|gb|AES69893.1| F-box [Medicago truncatula]

 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 113/258 (43%), Gaps = 48/258 (18%)

Query: 8   VPADIVYEIFIRLPVKSLMRFRSISKSWRDII-DGSLRFANMHMSTRLAAADEPQLLPLC 66
           +P D+V EI  RLPVKSL++FR + KSW+ +I D      ++HM T   AA         
Sbjct: 20  LPFDLVPEILCRLPVKSLLQFRCVCKSWKSLISDPKFAKKHLHMFTCQRAALS------- 72

Query: 67  NYIDAFDRKRRAALTFDGNIIKESDCPSPILDYSKRDHYYVFVEFVAYGLLLLQDCWAGR 126
               +  R     L+F   +  E     PIL+    D           G++    C+   
Sbjct: 73  ---TSSGRVTTTQLSFPHALYNEL---YPILNVCSCD-----------GVI----CFTLN 111

Query: 127 NKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGR-EPRNN 185
           N+L L NP   +    P PL+   +    P SL  Y IG+D  + +YKIV +   +  N 
Sbjct: 112 NRLLLWNPSIRKFNMFP-PLKHSGRGRQNPCSL--YSIGYDRFSQTYKIVVVSFFKDDNT 168

Query: 186 LEIEVYTLGTHSWRHAS--PSSIRLSNNKLQLQCLSEFGLSAYGDMHWKNWEFGSDHEAR 243
            ++ VYTLGT SW+     P+S           C+   G+ A G +   NW       + 
Sbjct: 169 NQVHVYTLGTDSWKRIGDLPNS----------SCIDNPGVFASGTI---NWLAKDSRSSI 215

Query: 244 IISFDFKNEQLNETPLPD 261
           +IS DF+ E   +   P+
Sbjct: 216 VISLDFEKESYQKLSHPN 233

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	266
TAIR|locus:2092985	367	AT3G21120 "AT3G21120" [Arabido	0.838	0.607	0.3	2.9e-16
TAIR|locus:2082410	427	AT3G06240 "AT3G06240" [Arabido	0.481	0.299	0.311	3.3e-14
TAIR|locus:2075591	360	AT3G47150 "AT3G47150" [Arabido	0.665	0.491	0.293	2.2e-11
TAIR|locus:2076196	364	AT3G23880 "AT3G23880" [Arabido	0.868	0.634	0.246	3.1e-10
TAIR|locus:2041115	334	AT2G02030 "AT2G02030" [Arabido	0.924	0.736	0.279	6e-10
TAIR|locus:2119787	411	AT4G19940 "AT4G19940" [Arabido	0.883	0.571	0.266	4.8e-08
TAIR|locus:2141548	383	AT4G09190 "AT4G09190" [Arabido	0.484	0.336	0.265	5.1e-08
TAIR|locus:2027397	363	AT1G11620 "AT1G11620" [Arabido	0.857	0.628	0.25	1.9e-07
TAIR|locus:2077903	369	AT3G08750 "AT3G08750" [Arabido	0.639	0.460	0.276	2.1e-07
TAIR|locus:2058480	436	AT2G40920 "AT2G40920" [Arabido	0.849	0.518	0.277	3.5e-07

TAIR|locus:2092985 AT3G21120 "AT3G21120" [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 81/270 (30%), Positives = 125/270 (46%)

Query:     8 VPADIVYEIFIRLPVKSLMRFRSISKSWRD-IIDGSLRFANMHMSTRLAAADEPQLLPLC 66
             +P D+V EI  ++P  SL RFRS  + W   ++DGS  FA  H       A  P+  P+ 
Sbjct:     3 LPEDLVLEILSKVPAVSLARFRSTCRRWNALVVDGS--FAKKHY------AYGPRQYPIV 54

Query:    67 NYIDAFDRKRRAALTFDGNIIKESDCPSPIL--DYSKRDHYYVFVEFV----AY---GLL 117
               +  F R    ++   G I   +  PS  L   +S +D      E V    A+   GLL
Sbjct:    55 IMLIEF-RVYLVSIDLHG-INNNNGAPSAKLTGQFSLKDPLSNSSEEVDIRNAFHCDGLL 112

Query:   118 LLQDCWAGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVR 177
             L   C     +L + NP  GE   + +P     +  L       Y +G+D+ ++SYKI+R
Sbjct:   113 L---CCTKDRRLVVWNPCSGETKWI-QPRNSYKESDL-------YALGYDNRSSSYKILR 161

Query:   178 LGREPRNN---LEIEVYTLGTHSWRHASPSSIRLSNNKLQLQCLSEFGLSAYGDMHW--- 231
             +   P  N   +E EVY   +HSWR     S+ ++ +   +Q    +G++  G  +W   
Sbjct:   162 M--HPVGNPFHIESEVYDFASHSWR-----SVGVTTD-FHIQTNESYGMNVKGTTYWFAL 213

Query:   232 -KNWEFGSDHEARIISFDFKNEQLNETPLP 260
              K+W + SD    ++SFDF  E+    PLP
Sbjct:   214 SKDW-WSSDDRRFLLSFDFSRERFQCLPLP 242

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2082410 AT3G06240 "AT3G06240" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 3.3e-14, Sum P(2) = 3.3e-14
 Identities = 43/138 (31%), Positives = 66/138 (47%)

Query:   125 GRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGREPRN 184
             G   +FL NP  G+   LP+  +  S ++      T YG GFD  T+ YK+V+L     +
Sbjct:   178 GEGAVFLYNPTTGDSKRLPENFRPKSVEYERDNFQT-YGFGFDGLTDDYKLVKLVATSED 236

Query:   185 NLEIEVYTLGTHSWRHASPSSIRLSNNKLQLQCLSEFGLSAYGDMHWKNWEFGSDHEARI 244
              L+  VY+L   SWR     ++   +N          G+   G +HW   E  S H  R+
Sbjct:   237 ILDASVYSLKADSWRRIC--NLNYEHNDGSYTS----GVHFNGAIHWVFTE--SRHNQRV 288

Query:   245 I-SFDFKNEQLNETPLPD 261
             + +FD + E+  E P+PD
Sbjct:   289 VVAFDIQTEEFREMPVPD 306

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2075591 AT3G47150 "AT3G47150" [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
 Identities = 56/191 (29%), Positives = 94/191 (49%)

Query:     2 DSSEVKVPADIVYEIFIRLPVKSLMRFRSISKSWRDIIDGSLRFANMHMSTRLAAADEPQ 61
             +++++ +P D+   I +RLPVKSL+RFR +SK W  II  S  F N H +   ++A  P+
Sbjct:     6 NTTQIYIPLDLQINILLRLPVKSLLRFRCVSKLWCSIIT-SHDFRNRHFNITSSSAP-PR 63

Query:    62 LLPLCNYIDAFDRKRRAALTFDGNIIKES--DCPSPILDYSKRDHYYVFVEFVAYGLLLL 119
             LL    + D +  K     + + N+   S   C  P  D SK +     V    +GL   
Sbjct:    64 LL--IAFQDFYGEKLLLVSSPNPNVSSSSTSSCCVPYKDLSKVEINGRKVYNAVWGLT-- 119

Query:   120 QDCWAGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLG 179
               C+  R K+ +CNP   E+   P+ ++  +   + P  +  Y +G+D   + YK++ + 
Sbjct:   120 --CFESRLKVGICNPSTRELHMFPQ-IKFKNYPDIFPCIM--YFLGYDRIEDQYKVLAID 174

Query:   180 REPRNNLEIEV 190
               P   LE +V
Sbjct:   175 NLPWR-LEYKV 184

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2076196 AT3G23880 "AT3G23880" [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 3.1e-10, P = 3.1e-10
 Identities = 64/260 (24%), Positives = 117/260 (45%)

Query:     8 VPADIVYEIFIRLPVKSLMRFRSISKSWRDIIDGSLRFANMH-MSTRLAAADEPQLLPLC 66
             +P +++ EI +RLPVKSL RF+ +  SWR +I  +L FA  H +    + A      P  
Sbjct:    14 LPLEMMEEILLRLPVKSLTRFKCVCSSWRSLISETL-FALKHALILETSKATTSTKSPYG 72

Query:    67 NYIDAFDRKRRAAL--TFDGNIIKESDCPSPILDYSKRDHYYVFVEFVAYGLLLLQDCWA 124
                 +    +   +   ++ + +  S+    +L    RD+Y V      +GL+     + 
Sbjct:    73 VITTSRYHLKSCCIHSLYNASTVYVSEHDGELLG---RDYYQVVG--TCHGLVCFHVDYD 127

Query:   125 GRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGREPRN 184
                 L+L NP     ++L + L     +      + +YG G+D + + YK+V L ++ R+
Sbjct:   128 --KSLYLWNP----TIKLQQRLSSSDLETSDDECVVTYGFGYDESEDDYKVVALLQQ-RH 180

Query:   185 NLEIE--VYTLGTHSWRHAS--PSSIRLSNNKLQLQCLSEFGLSAYGDMHWKNWEFGSDH 240
              ++IE  +Y+     WR  +  PS + +++        S  G+   G ++W      S  
Sbjct:   181 QVKIETKIYSTRQKLWRSNTSFPSGVVVADK-------SRSGIYINGTLNWA--ATSSSS 231

Query:   241 EARIISFDFKNEQLNETPLP 260
                IIS+D   ++  E P P
Sbjct:   232 SWTIISYDMSRDEFKELPGP 251

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IDA

TAIR|locus:2041115 AT2G02030 "AT2G02030" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 6.0e-10, P = 6.0e-10
 Identities = 78/279 (27%), Positives = 125/279 (44%)

Query:     5 EVKVPADIVYEIFIRLPVKSLMRFRSISKSWRDIIDGSLRFANMHMSTRLAAADEPQLLP 64
             ++ +P +IV EI +RLPVKSL RF+++SK WR +I  S  F   HM+  L  +   +LL 
Sbjct:    36 KIHIPNEIVEEILVRLPVKSLTRFQTVSKHWRTLIT-SKYFGKRHMA--LEKSKGCKLLF 92

Query:    65 LCN-YID-AFDRKRRAALTFDGNIIKESDCPS-------PILDYSKR-DHYYVF------ 108
             +C+ ++D A D      +  +   + E D  +         LD S+  D    F      
Sbjct:    93 VCDDFVDRAEDTLFLKTVALEKTSVSEGDEQAFEFEGYKGFLDISESCDGLVCFYDTTRA 152

Query:   109 VEFVAYGLLLLQDCWAGR-NKLFLCNPLRGEVLELPKPLQDCSKDFLLP-RSLTSYGIGF 166
             VE +     +  +    R  +L +  P   EV EL +P+QD     L P  + +  G+G 
Sbjct:   153 VEVMNPATTMFIELPLSRIQQLCIYKP-NPEV-EL-EPVQD-PNPVLDPVMTCSQIGVGK 208

Query:   167 DSATNSYKIVRL-GREPRNNLEIEVYTLGTHSWRHASPSSIRLSNNKLQLQCLSEFGLSA 225
             DS + SYK+V +    P      EV  L    WR  + +S+    +  Q+ C  +  + A
Sbjct:   209 DSVSGSYKLVWMYNTSPATPPTCEVLDLDGKKWRFVNTTSL----DHHQILC-DQRPVFA 263

Query:   226 YGDMHWKNW-EFG-SDHEARIISFDFKNEQLNETPLPDF 262
              G ++W    E G +  + ++I  D   E       P F
Sbjct:   264 NGSLYWLTGDEEGYATTQTKLIVLDLHTEMFQVIQTPPF 302

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2119787 AT4G19940 "AT4G19940" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 4.8e-08, P = 4.8e-08
 Identities = 71/266 (26%), Positives = 106/266 (39%)

Query:     7 KVPADIVYEIFIRLPVKSLMRFRSISKSWRDIIDGSLRFANMHMSTRLAAADEPQLLPLC 66
             ++P D+V EI  RLP KSLMRF+S+SK W  +I  S  F N     RL     P  L +C
Sbjct:    34 EIPFDLVIEILTRLPAKSLMRFKSVSKLWSSLIC-SRNFTN-----RLLKLSSPPRLFMC 87

Query:    67 NYIDAFDRKRRAALTF----DGNIIKESDCPSPILDYSKRDHYYVFVEFVAYGLLLLQDC 122
                      +   L+     D +I   S      L       Y +    V  GL+    C
Sbjct:    88 LSSSDNSHLKTVLLSLSSPPDSDITMSSSVIDQDLTMPGMKGYQI--SHVFRGLM----C 141

Query:   123 WAGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTS----YGIGFDSATNSYKIVRL 178
                ++   + N    +++ LP    D  +  +L     S    Y IG D   + YK+V +
Sbjct:   142 LVKKSSAQIYNTTTRQLVVLP----DIEESTILAEEHKSKKIMYHIGHDPVYDQYKVVCI 197

Query:   179 GREPRNNLEIEVYTLGTHSW----RHASPSSIRLSNNKLQLQCLSEFGLSAYGDMHWKNW 234
                 R + E+E YT  +  W            R  + K         GL+  G MH+  W
Sbjct:   198 --VSRASDEVEEYTFLSEHWVLLLEGEGSRRWRKISCKYPPHVPLGQGLTLSGRMHYLAW 255

Query:   235 EFGSDHEARIISFDFKNEQLNETPLP 260
                SD+   +I FD  +E+ +   +P
Sbjct:   256 VRVSDNRVLVI-FDTHSEEFSMLQVP 280

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2141548 AT4G09190 "AT4G09190" [Arabidopsis thaliana (taxid:3702)]

 Score = 101 (40.6 bits), Expect = 5.1e-08, Sum P(2) = 5.1e-08
 Identities = 38/143 (26%), Positives = 67/143 (46%)

Query:     3 SSEVKVPADIVYEIFIRLPVKSLMRFRSISKSWRDIIDGSLRFANMHMSTRLAAADEPQL 62
             S    +P D++ EI   LP KS++RFRS+SK W  II  +  F +  ++  L++   P +
Sbjct:    17 SQREHIPLDLIVEIVSSLPAKSIVRFRSVSKLWSSIIT-TPDFTSSVVTRSLSS--RPCV 73

Query:    63 LPLCNYIDAFDRKRRAALTFDGNIIKESDCPS-PILDYSKRDHYYVFVEFVAYGLLLLQD 121
             L +      F +K      F   + ++  CP+     Y+  ++  +      +GL+ L+ 
Sbjct:    74 LLI------F-QKHDKLFFFASPVHQKKTCPNVENFQYTIPNNGKLQRCESVHGLIYLE- 125

Query:   122 CWAGRNKLFLCNPLRGEVLELPK 144
                  N +F+ NP+      LPK
Sbjct:   126 --TSTNVMFIRNPITKSFFTLPK 146

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2027397 AT1G11620 "AT1G11620" [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 1.9e-07, P = 1.9e-07
 Identities = 64/256 (25%), Positives = 103/256 (40%)

Query:    10 ADIVYEIFIRLPVKSLMRFRSISKSWRDIIDGSLRFANMHMSTRLAAADEPQLLPLCNYI 69
             +D+V EI  R+P +SL+R RS  K W  +I    RF N H+S       +  +    + +
Sbjct:     8 SDLVEEILSRVPARSLVRLRSTCKQWEALI-AEPRFVNKHLSHMRYREQQFTVFNNEHIV 66

Query:    70 DAFDRKRRAALTFDGNIIKESDCPSPILDYSKRDHYYVFVEFVAYGLLLLQDCWAGRNKL 129
                     + +  D N  K  +C    L +       + +     GLLL    +  ++ L
Sbjct:    67 SPLFGSTTSYVGIDFN--KPENCGVK-LPFPIALSPAINISHCD-GLLL----YVTKSML 118

Query:   130 FLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGF----DSATNSYKIVRLGREPRNN 185
              + NPL  +     K    CS+ F    S+ +YG+G+     S    YK+VR     +N+
Sbjct:   119 LVANPLLSQ-----KRWIKCSEGF--DHSMDAYGLGYLFNQSSGFYDYKVVRFRCGIKNS 171

Query:   186 LEIEVYTLGTHSWRHASPSSIR-LSNNKLQLQCLSEFGLSAYGDMHWKNWEFGSDHEARI 244
               +EVY   + SW+    ++        L   CL        G  +W  +    +    I
Sbjct:   172 SRVEVYAFKSDSWKVVVDTNFGGFDGLPLSSVCLR-------GTPYWLGYNKSGNELMSI 224

Query:   245 ISFDFKNEQLNETPLP 260
              SFDF  E+     LP
Sbjct:   225 QSFDFSKERFEPLFLP 240

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2077903 AT3G08750 "AT3G08750" [Arabidopsis thaliana (taxid:3702)]

 Score = 105 (42.0 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
 Identities = 55/199 (27%), Positives = 94/199 (47%)

Query:    67 NYIDAFDRKRRAALTFDGNIIKE-SDCPSPILDYSK-RDHYYVFVEFVAYGLLLLQDCWA 124
             N++D +  +R    T+D  II   ++  S  L   + RD Y ++      GL+L   C  
Sbjct:    51 NHLDHYSPERFIR-TYDQQIIDPVTEILSDALIPDEFRDLYPIYSMVHCDGLMLCT-CRK 108

Query:   125 GRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSY-GIGFDS--ATNSYKIVRL-GR 180
               N L + NP+  E+  + KP    S  +L     T Y GIG+D   + ++YKI++L GR
Sbjct:   109 WDNSLAVWNPVLREIKWI-KP----SVCYLH----TDYVGIGYDDNVSRDNYKILKLLGR 159

Query:   181 EPRNN---LEIEVYTLGTHSWRHASPSSIRLSNNKLQLQCLSEFGLSAYGDMHWKNWEFG 237
              P+++      E+Y   + SW+    + +   +  + ++C +  G+S  G M+W   +  
Sbjct:   160 LPKDDDSDPNCEIYEFKSDSWK----TLVAKFDWDIDIRCNN--GVSVKGKMYWIAKK-- 211

Query:   238 SDHEARIISFDFKNEQLNE 256
                +  II FDF  E   E
Sbjct:   212 -KEDFTIIRFDFSTETFKE 229

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2058480 AT2G40920 "AT2G40920" [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 3.5e-07, P = 3.5e-07
 Identities = 73/263 (27%), Positives = 111/263 (42%)

Query:    11 DIVYEIFIRLPVKSLMRFRSISKSWRDIIDGSLRFANMHMSTRLAAADEPQLLPLCNYID 70
             D V EI +R P+ SL RF+ +SK W  +I  S  F N+  +T      +P+L  +C   D
Sbjct:    57 DHVMEILMRFPLTSLTRFKCVSKQWSSLIS-SRYFCNLLYTT--VTRQQPRLY-MCLKDD 112

Query:    71 AFDRKRRAALTFD-GN---IIKESDCPSPILDYSKRDHYYVFVEFVAYGLLLLQDCWAGR 126
                R   +  +   GN   ++ E D   P +          F   V  GL+    C++ R
Sbjct:   113 GGHRVLLSISSPSRGNTSFVVVEQDLSIPGMGG--------FFLNVVRGLM----CFSRR 160

Query:   127 NKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRL----GREP 182
              K  + NP   ++L LP    D        +    Y IG D  ++ YK+V         P
Sbjct:   161 KKARIYNPSTKQLLTLPAIKSDIVAQQGQTKHHPRYYIGHDPVSDQYKLVCTVAISSLLP 220

Query:   183 R-NNLEIE--VYTLGTH-SWRHASPSSIRLSNNKLQLQCLSEFGLSAYGDM-HWKNWEFG 237
             R  NL+ E  V+ L    SW+   P    L N +      S  G S  G +  +  W   
Sbjct:   221 RLGNLKSEHWVFALEAGGSWKKVVP----LENYRHHAP--STEGRSTSGSVVRYMAWP-- 272

Query:   238 SDHEARIISFDFKNEQLNETPLP 260
              ++   ++SFD ++EQL   P+P
Sbjct:   273 DNYNCVVVSFDIRSEQLTIIPVP 295

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	266
TIGR01640	230	TIGR01640, F_box_assoc_1, F-box protein interactio	8e-12
smart00256	41	smart00256, FBOX, A Receptor for Ubiquitination Ta	4e-06
pfam00646	48	pfam00646, F-box, F-box domain	9e-05

>gnl|CDD|233502 TIGR01640, F_box_assoc_1, F-box protein interaction domain

 Score = 62.8 bits (153), Expect = 8e-12
 Identities = 41/156 (26%), Positives = 68/156 (43%), Gaps = 24/156 (15%)

Query: 115 GLLLLQDCWAGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYK 174
           GL+    C++   +L + NP  G+   LP P     K     +   +Y +G+D     YK
Sbjct: 6   GLI----CFSYGKRLVVWNPSTGQSRWLPTP-----KSRRSNKESDTYFLGYDPIEKQYK 56

Query: 175 IVRL--GREPRNNLEIEVYTLGTHSWRH--ASPSSIRLSNNKLQLQCLSEFGLSAYGDMH 230
           ++        RN  E +VYTLG++SWR    SP    L +           G+   G ++
Sbjct: 57  VLCFSDRSGNRNQSEHQVYTLGSNSWRTIECSPPHHPLKSR----------GVCINGVLY 106

Query: 231 WKNWEFGSDHEARIISFDFKNEQLNE-TPLPDFRMP 265
           +  +   ++ +  I+SFD  +E+  E  PLP     
Sbjct: 107 YLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSD 142

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. Length = 230

>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets

 Score = 42.4 bits (101), Expect = 4e-06
 Identities = 14/32 (43%), Positives = 21/32 (65%)

Query: 9  PADIVYEIFIRLPVKSLMRFRSISKSWRDIID 40
          P +I+ EI  +L  K L+R R +S+ WR +ID
Sbjct: 2  PDEILEEILSKLDPKDLLRLRKVSRKWRSLID 33

Length = 41

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 38.7 bits (91), Expect = 9e-05
 Identities = 14/32 (43%), Positives = 20/32 (62%)

Query: 9  PADIVYEIFIRLPVKSLMRFRSISKSWRDIID 40
          P D++ EI  RL  K L+R   +SK WR ++D
Sbjct: 7  PDDLLLEILSRLDPKDLLRLSLVSKRWRSLVD 38

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	266
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	99.91
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.98
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.85
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.83
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	98.82
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	98.14
PHA02713	557	hypothetical protein; Provisional	97.94
PHA02790	480	Kelch-like protein; Provisional	97.94
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.89
PHA02713	557	hypothetical protein; Provisional	97.82
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.72
PHA03098	534	kelch-like protein; Provisional	97.71
PHA02790	480	Kelch-like protein; Provisional	97.65
PHA03098	534	kelch-like protein; Provisional	97.64
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.62
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	97.45
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	97.45
PLN02153	341	epithiospecifier protein	97.23
PLN02193	470	nitrile-specifier protein	97.04
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	97.03
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	96.98
PLN02153	341	epithiospecifier protein	96.91
KOG2997	366	consensus F-box protein FBX9 [General function pre	96.8
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	96.73
PLN02193	470	nitrile-specifier protein	96.7
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	96.55
PF13964	50	Kelch_6: Kelch motif	95.73
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	95.49
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	94.69
KOG4693	392	consensus Uncharacterized conserved protein, conta	93.64
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	93.19
PF13964	50	Kelch_6: Kelch motif	93.03
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	92.72
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	92.32
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	91.34
KOG4341	483	consensus F-box protein containing LRR [General fu	91.03
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	88.62
KOG4693	392	consensus Uncharacterized conserved protein, conta	88.47
smart00612	47	Kelch Kelch domain.	88.39
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	84.41
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	82.74
PF13415	49	Kelch_3: Galactose oxidase, central domain	82.19

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=99.91  E-value=8.6e-24  Score=175.68  Aligned_cols=135  Identities=27%  Similarity=0.393  Sum_probs=100.1

Q ss_pred             eccccCeEEEeeeccCCceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeec--CCCcc
Q 042334          109 VEFVAYGLLLLQDCWAGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGRE--PRNNL  186 (266)
Q Consensus       109 ~~s~~~Glll~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~--~~~~~  186 (266)
                      +++ ||||||+..    ...++||||+||+++.||+++....  ..   ....++||||+.+++||||++...  .....
T Consensus         1 ~~s-CnGLlc~~~----~~~~~V~NP~T~~~~~LP~~~~~~~--~~---~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~   70 (230)
T TIGR01640         1 VVP-CDGLICFSY----GKRLVVWNPSTGQSRWLPTPKSRRS--NK---ESDTYFLGYDPIEKQYKVLCFSDRSGNRNQS   70 (230)
T ss_pred             Ccc-cceEEEEec----CCcEEEECCCCCCEEecCCCCCccc--cc---ccceEEEeecccCCcEEEEEEEeecCCCCCc
Confidence            468 999999886    3789999999999999997654211  11   112579999999999999999543  22457


Q ss_pred             eEEEEEcCCCCccccCC-CccccccchhhhccccccceEEcCeEeee-eccCCCCCccEEEEEEcCCCeec-ccCCCCCC
Q 042334          187 EIEVYTLGTHSWRHASP-SSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFGSDHEARIISFDFKNEQLN-ETPLPDFR  263 (266)
Q Consensus       187 ~~~vyss~t~~W~~~~~-p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~~~~~~~il~fD~~~~~~~-~i~lP~~~  263 (266)
                      .++||++++++||.+.. +.......         .++++||++||+ ..+. ......|++||+.+|+|+ .+++|...
T Consensus        71 ~~~Vys~~~~~Wr~~~~~~~~~~~~~---------~~v~~~G~lyw~~~~~~-~~~~~~IvsFDl~~E~f~~~i~~P~~~  140 (230)
T TIGR01640        71 EHQVYTLGSNSWRTIECSPPHHPLKS---------RGVCINGVLYYLAYTLK-TNPDYFIVSFDVSSERFKEFIPLPCGN  140 (230)
T ss_pred             cEEEEEeCCCCccccccCCCCccccC---------CeEEECCEEEEEEEECC-CCCcEEEEEEEcccceEeeeeecCccc
Confidence            99999999999999942 22211111         389999999999 4331 111238999999999999 58998753

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.98  E-value=6.6e-10  Score=68.39  Aligned_cols=40  Identities=28%  Similarity=0.583  Sum_probs=34.8

Q ss_pred             CCCCCHHHHHHHhccCChhhHHHHHhhhHhHHHHhcCCHHH
Q 042334            5 EVKVPADIVYEIFIRLPVKSLMRFRSISKSWRDIIDGSLRF   45 (266)
Q Consensus         5 ~~~LP~Dll~~IL~rLP~~~l~r~~~VcK~Wr~~i~~s~~F   45 (266)
                      +..||+|++.+||.+|+++++.+++.|||+|+.++. ++.+
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~-~~~l   40 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIAN-DNSL   40 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHT-CCCH
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHC-Chhh
Confidence            468999999999999999999999999999999998 6543

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.85  E-value=3.8e-09  Score=62.83  Aligned_cols=38  Identities=45%  Similarity=0.871  Sum_probs=35.7

Q ss_pred             CCHHHHHHHhccCChhhHHHHHhhhHhHHHHhcCCHHHH
Q 042334            8 VPADIVYEIFIRLPVKSLMRFRSISKSWRDIIDGSLRFA   46 (266)
Q Consensus         8 LP~Dll~~IL~rLP~~~l~r~~~VcK~Wr~~i~~s~~F~   46 (266)
                      ||+|++.+||.+|+++++.++++|||+|+.++. ++.|.
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~-~~~~~   38 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLID-SHDFW   38 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-Chhhh
Confidence            799999999999999999999999999999999 77664

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.83  E-value=5.7e-09  Score=64.47  Aligned_cols=44  Identities=34%  Similarity=0.557  Sum_probs=36.8

Q ss_pred             CCCCCHHHHHHHhccCChhhHHHHHhhhHhHHHHhcCCHHHHHHH
Q 042334            5 EVKVPADIVYEIFIRLPVKSLMRFRSISKSWRDIIDGSLRFANMH   49 (266)
Q Consensus         5 ~~~LP~Dll~~IL~rLP~~~l~r~~~VcK~Wr~~i~~s~~F~~~~   49 (266)
                      +..||+|++.+||.+|+++++.+++.|||+|+.++. +..+...+
T Consensus         3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~-~~~~~~~~   46 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVD-SPRLWKKI   46 (48)
T ss_dssp             HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHT-THHHHHHH
T ss_pred             HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHc-CCCccHHH
Confidence            457999999999999999999999999999999999 88876543

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=98.82  E-value=1.2e-07  Score=82.87  Aligned_cols=38  Identities=34%  Similarity=0.516  Sum_probs=35.5

Q ss_pred             CCCCCCCHHHHHHHhccCC-hhhHHHHHhhhHhHHHHhc
Q 042334            3 SSEVKVPADIVYEIFIRLP-VKSLMRFRSISKSWRDIID   40 (266)
Q Consensus         3 s~~~~LP~Dll~~IL~rLP-~~~l~r~~~VcK~Wr~~i~   40 (266)
                      ..|+.||+||+..|..||| .-++.|+|+|||+||+.+.
T Consensus         2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~   40 (373)
T PLN03215          2 ADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVS   40 (373)
T ss_pred             CChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence            4688999999999999998 7799999999999999987

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=98.14  E-value=2.7e-06  Score=64.08  Aligned_cols=38  Identities=29%  Similarity=0.663  Sum_probs=32.0

Q ss_pred             ceEEcCeEeeeeccCCCCCccEEEEEEcCCCeecccCCC
Q 042334          222 GLSAYGDMHWKNWEFGSDHEARIISFDFKNEQLNETPLP  260 (266)
Q Consensus       222 ~v~~~G~~yw~~~~~~~~~~~~il~fD~~~~~~~~i~lP  260 (266)
                      |+++||.+||+... .......|++||+++|+|+.|++|
T Consensus         1 gicinGvly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P   38 (129)
T PF08268_consen    1 GICINGVLYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLP   38 (129)
T ss_pred             CEEECcEEEeEEEE-CCCCCcEEEEEEcCCceEEEEEee
Confidence            68999999999222 234578999999999999999998

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PHA02713 hypothetical protein; Provisional

Probab=97.94  E-value=0.0003  Score=65.95  Aligned_cols=130  Identities=8%  Similarity=-0.042  Sum_probs=79.5

Q ss_pred             eccccCeEEEeeecc---CCceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeecC---
Q 042334          109 VEFVAYGLLLLQDCW---AGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGREP---  182 (266)
Q Consensus       109 ~~s~~~Glll~~~~~---~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~---  182 (266)
                      +.. .+|-|-+..+.   .....+.++||.|.+|..+++++..+..       ..  +..++     =+|.++....   
T Consensus       347 ~~~-~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~-------~~--~~~~~-----g~IYviGG~~~~~  411 (557)
T PHA02713        347 LAV-IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSS-------YG--MCVLD-----QYIYIIGGRTEHI  411 (557)
T ss_pred             EEE-ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCccccc-------cc--EEEEC-----CEEEEEeCCCccc
Confidence            344 67766544432   1124688999999999999998865321       11  11221     2444442211   


Q ss_pred             -----------------CCcceEEEEEcCCCCcccc-CCCccccccchhhhccccccceEEcCeEeee-eccCCCCCccE
Q 042334          183 -----------------RNNLEIEVYTLGTHSWRHA-SPSSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFGSDHEAR  243 (266)
Q Consensus       183 -----------------~~~~~~~vyss~t~~W~~~-~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~~~~~~~  243 (266)
                                       .....+++|+..++.|..+ .++.... ..         ..+.++|.||.+ ...........
T Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~-~~---------~~~~~~~~IYv~GG~~~~~~~~~~  481 (557)
T PHA02713        412 DYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTI-RP---------GVVSHKDDIYVVCDIKDEKNVKTC  481 (557)
T ss_pred             ccccccccccccccccccccceEEEECCCCCeEeecCCCCcccc-cC---------cEEEECCEEEEEeCCCCCCcccee
Confidence                             0135799999999999988 4443322 22         268999999999 32211111235


Q ss_pred             EEEEEcCC-Ceeccc-CCCCCC
Q 042334          244 IISFDFKN-EQLNET-PLPDFR  263 (266)
Q Consensus       244 il~fD~~~-~~~~~i-~lP~~~  263 (266)
                      +-+||+.+ ++|+.+ ++|..+
T Consensus       482 ve~Ydp~~~~~W~~~~~m~~~r  503 (557)
T PHA02713        482 IFRYNTNTYNGWELITTTESRL  503 (557)
T ss_pred             EEEecCCCCCCeeEccccCccc
Confidence            78999999 799987 666543

>PHA02790 Kelch-like protein; Provisional

Probab=97.94  E-value=0.00039  Score=64.06  Aligned_cols=117  Identities=9%  Similarity=-0.015  Sum_probs=76.3

Q ss_pred             cCeEEEeeeccCCceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeecCCCcceEEEEE
Q 042334          113 AYGLLLLQDCWAGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGREPRNNLEIEVYT  192 (266)
Q Consensus       113 ~~Glll~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~vys  192 (266)
                      .+|.|-+..+......+-.++|.+.+|..+|+++..+.         ...+..+     +-+|.++.+..+....+++|+
T Consensus       317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~---------~~~~~~~-----~g~IYviGG~~~~~~~ve~yd  382 (480)
T PHA02790        317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRC---------NPAVASI-----NNVIYVIGGHSETDTTTEYLL  382 (480)
T ss_pred             ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCc---------ccEEEEE-----CCEEEEecCcCCCCccEEEEe
Confidence            67777555542223457788999999999999885431         1112222     235666643322345789999


Q ss_pred             cCCCCcccc-CCCccccccchhhhccccccceEEcCeEeeeeccCCCCCccEEEEEEcCCCeeccc-CCCC
Q 042334          193 LGTHSWRHA-SPSSIRLSNNKLQLQCLSEFGLSAYGDMHWKNWEFGSDHEARIISFDFKNEQLNET-PLPD  261 (266)
Q Consensus       193 s~t~~W~~~-~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~il~fD~~~~~~~~i-~lP~  261 (266)
                      ..++.|... .+|.... ..         ..+.++|.||.+..        ..-+||+++++|+.+ ++|.
T Consensus       383 p~~~~W~~~~~m~~~r~-~~---------~~~~~~~~IYv~GG--------~~e~ydp~~~~W~~~~~m~~  435 (480)
T PHA02790        383 PNHDQWQFGPSTYYPHY-KS---------CALVFGRRLFLVGR--------NAEFYCESSNTWTLIDDPIY  435 (480)
T ss_pred             CCCCEEEeCCCCCCccc-cc---------eEEEECCEEEEECC--------ceEEecCCCCcEeEcCCCCC
Confidence            999999988 4443222 22         26789999999842        256799999999987 4443

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.89  E-value=0.00027  Score=66.38  Aligned_cols=128  Identities=16%  Similarity=0.103  Sum_probs=87.2

Q ss_pred             eccccCeEEEeeeccC----CceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEee--cC
Q 042334          109 VEFVAYGLLLLQDCWA----GRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGR--EP  182 (266)
Q Consensus       109 ~~s~~~Glll~~~~~~----~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~--~~  182 (266)
                      +.. .+|.|.+..+..    .-..+-.+||.|.+|..+|++...+.          .++.+.-    +-+|+++..  ..
T Consensus       423 v~~-~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~----------~~g~a~~----~~~iYvvGG~~~~  487 (571)
T KOG4441|consen  423 VAV-LGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRS----------GFGVAVL----NGKIYVVGGFDGT  487 (571)
T ss_pred             EEE-ECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccc----------cceEEEE----CCEEEEECCccCC
Confidence            444 788887777541    22578889999999999999986531          1222211    345666632  22


Q ss_pred             CCcceEEEEEcCCCCccccC-CCccccccchhhhccccccceEEcCeEeeeeccCCCCCccEEEEEEcCCCeecccCCCC
Q 042334          183 RNNLEIEVYTLGTHSWRHAS-PSSIRLSNNKLQLQCLSEFGLSAYGDMHWKNWEFGSDHEARIISFDFKNEQLNETPLPD  261 (266)
Q Consensus       183 ~~~~~~~vyss~t~~W~~~~-~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~il~fD~~~~~~~~i~lP~  261 (266)
                      .....+|.|+..++.|..+. ++.. ....         ..+.++|.+|...-.++...-..|-+||..+++|....-|.
T Consensus       488 ~~~~~VE~ydp~~~~W~~v~~m~~~-rs~~---------g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~~~  557 (571)
T KOG4441|consen  488 SALSSVERYDPETNQWTMVAPMTSP-RSAV---------GVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTEVTEPE  557 (571)
T ss_pred             CccceEEEEcCCCCceeEcccCccc-cccc---------cEEEECCEEEEEecccCccccceeEEcCCCCCceeeCCCcc
Confidence            34556999999999999993 3322 1122         26889999999933445667789999999999999873343

>PHA02713 hypothetical protein; Provisional

Probab=97.82  E-value=0.00037  Score=65.40  Aligned_cols=126  Identities=15%  Similarity=0.136  Sum_probs=79.9

Q ss_pred             cCeEEEeeecc----CCceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeec--CCCcc
Q 042334          113 AYGLLLLQDCW----AGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGRE--PRNNL  186 (266)
Q Consensus       113 ~~Glll~~~~~----~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~--~~~~~  186 (266)
                      .+|.|.+..+.    .....+..+||.+++|..+|+++..+..       ..  +..++     -||+++.+.  .....
T Consensus       302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~-------~~--~~~~~-----g~IYviGG~~~~~~~~  367 (557)
T PHA02713        302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCR-------FS--LAVID-----DTIYAIGGQNGTNVER  367 (557)
T ss_pred             ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhc-------ee--EEEEC-----CEEEEECCcCCCCCCc
Confidence            56666554432    1134688999999999999998854211       11  11221     366666432  22345


Q ss_pred             eEEEEEcCCCCcccc-CCCccccccchhhhccccccceEEcCeEeee-eccCC-----------------CCCccEEEEE
Q 042334          187 EIEVYTLGTHSWRHA-SPSSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFG-----------------SDHEARIISF  247 (266)
Q Consensus       187 ~~~vyss~t~~W~~~-~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~-----------------~~~~~~il~f  247 (266)
                      .+++|+..++.|..+ ++|..... .         ..+.++|.||.+ .....                 ......+.+|
T Consensus       368 sve~Ydp~~~~W~~~~~mp~~r~~-~---------~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~Y  437 (557)
T PHA02713        368 TIECYTMGDDKWKMLPDMPIALSS-Y---------GMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRY  437 (557)
T ss_pred             eEEEEECCCCeEEECCCCCccccc-c---------cEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEE
Confidence            799999999999988 55543322 2         267889999998 32210                 0013568999


Q ss_pred             EcCCCeeccc-CCCCC
Q 042334          248 DFKNEQLNET-PLPDF  262 (266)
Q Consensus       248 D~~~~~~~~i-~lP~~  262 (266)
                      |+.+++|..+ ++|..
T Consensus       438 DP~td~W~~v~~m~~~  453 (557)
T PHA02713        438 DTVNNIWETLPNFWTG  453 (557)
T ss_pred             CCCCCeEeecCCCCcc
Confidence            9999999987 55443

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.72  E-value=0.0014  Score=61.59  Aligned_cols=124  Identities=15%  Similarity=0.110  Sum_probs=82.7

Q ss_pred             EeccccCeEEEeeecc---CCceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeec--C
Q 042334          108 FVEFVAYGLLLLQDCW---AGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGRE--P  182 (266)
Q Consensus       108 ~~~s~~~Glll~~~~~---~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~--~  182 (266)
                      -+++ ++|.|-...+.   ..-..+-.++|.|.+|..++++...+            .+.+.-..  +=+|.++...  .
T Consensus       375 ~v~~-l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r------------~~~gv~~~--~g~iYi~GG~~~~  439 (571)
T KOG4441|consen  375 GVAV-LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRR------------SGHGVAVL--GGKLYIIGGGDGS  439 (571)
T ss_pred             eeEE-ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcce------------eeeEEEEE--CCEEEEEcCcCCC
Confidence            4555 78888655543   12335778899999999999887532            12222111  2345555322  2


Q ss_pred             C-CcceEEEEEcCCCCcccc-CCCccccccchhhhccccccceEEcCeEeee-eccCCCCCccEEEEEEcCCCeeccc
Q 042334          183 R-NNLEIEVYTLGTHSWRHA-SPSSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFGSDHEARIISFDFKNEQLNET  257 (266)
Q Consensus       183 ~-~~~~~~vyss~t~~W~~~-~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~~~~~~~il~fD~~~~~~~~i  257 (266)
                      . ....++.|+..++.|+.. +++.... ..         ..+.++|.||.+ ..+. ......+-+||+.+.+|..+
T Consensus       440 ~~~l~sve~YDP~t~~W~~~~~M~~~R~-~~---------g~a~~~~~iYvvGG~~~-~~~~~~VE~ydp~~~~W~~v  506 (571)
T KOG4441|consen  440 SNCLNSVECYDPETNTWTLIAPMNTRRS-GF---------GVAVLNGKIYVVGGFDG-TSALSSVERYDPETNQWTMV  506 (571)
T ss_pred             ccccceEEEEcCCCCceeecCCcccccc-cc---------eEEEECCEEEEECCccC-CCccceEEEEcCCCCceeEc
Confidence            2 457999999999999998 5443322 22         268999999999 4332 34455699999999999998

>PHA03098 kelch-like protein; Provisional

Probab=97.71  E-value=0.00041  Score=64.81  Aligned_cols=111  Identities=14%  Similarity=0.132  Sum_probs=72.2

Q ss_pred             eeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeec--CCCcceEEEEEcCCCCcccc-CC
Q 042334          127 NKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGRE--PRNNLEIEVYTLGTHSWRHA-SP  203 (266)
Q Consensus       127 ~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~--~~~~~~~~vyss~t~~W~~~-~~  203 (266)
                      ..++.+||.|++|..+|+++..+.  ..     ..  ..++     =+|+++...  ......+++|+..++.|+.. ++
T Consensus       311 ~~v~~yd~~~~~W~~~~~~~~~R~--~~-----~~--~~~~-----~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l  376 (534)
T PHA03098        311 NSVVSYDTKTKSWNKVPELIYPRK--NP-----GV--TVFN-----NRIYVIGGIYNSISLNTVESWKPGESKWREEPPL  376 (534)
T ss_pred             ccEEEEeCCCCeeeECCCCCcccc--cc-----eE--EEEC-----CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCc
Confidence            368999999999999998874421  11     11  1121     235555322  22356789999999999988 55


Q ss_pred             CccccccchhhhccccccceEEcCeEeee-eccCCCCCccEEEEEEcCCCeeccc-CCCC
Q 042334          204 SSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFGSDHEARIISFDFKNEQLNET-PLPD  261 (266)
Q Consensus       204 p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~~~~~~~il~fD~~~~~~~~i-~lP~  261 (266)
                      |... ....         .+.++|.+|-+ ...........+..||+.+.+|..+ ++|.
T Consensus       377 p~~r-~~~~---------~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~  426 (534)
T PHA03098        377 IFPR-YNPC---------VVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPI  426 (534)
T ss_pred             CcCC-ccce---------EEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCc
Confidence            5322 2222         67889999998 4321111235789999999999987 4554

>PHA02790 Kelch-like protein; Provisional

Probab=97.65  E-value=0.0014  Score=60.53  Aligned_cols=118  Identities=12%  Similarity=0.066  Sum_probs=76.8

Q ss_pred             EeccccCeEEEeeecc-CCceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeecCCCcc
Q 042334          108 FVEFVAYGLLLLQDCW-AGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGREPRNNL  186 (266)
Q Consensus       108 ~~~s~~~Glll~~~~~-~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~  186 (266)
                      .+.. ++|.|-+..+. .....+.++||.|.+|..+|+++..+..        . .+..++     -||+++..      
T Consensus       357 ~~~~-~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~--------~-~~~~~~-----~~IYv~GG------  415 (480)
T PHA02790        357 AVAS-INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK--------S-CALVFG-----RRLFLVGR------  415 (480)
T ss_pred             EEEE-ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc--------c-eEEEEC-----CEEEEECC------
Confidence            3445 78887655432 1224567789999999999998754211        1 111222     25666542      


Q ss_pred             eEEEEEcCCCCcccc-CCCccccccchhhhccccccceEEcCeEeee-eccCCCCCccEEEEEEcCCCeeccc
Q 042334          187 EIEVYTLGTHSWRHA-SPSSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFGSDHEARIISFDFKNEQLNET  257 (266)
Q Consensus       187 ~~~vyss~t~~W~~~-~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~~~~~~~il~fD~~~~~~~~i  257 (266)
                      .+++|+..++.|..+ ++|.. ....         ..+.++|.||-+ ..+. ......+-+||+.+++|+..
T Consensus       416 ~~e~ydp~~~~W~~~~~m~~~-r~~~---------~~~v~~~~IYviGG~~~-~~~~~~ve~Yd~~~~~W~~~  477 (480)
T PHA02790        416 NAEFYCESSNTWTLIDDPIYP-RDNP---------ELIIVDNKLLLIGGFYR-GSYIDTIEVYNNRTYSWNIW  477 (480)
T ss_pred             ceEEecCCCCcEeEcCCCCCC-cccc---------EEEEECCEEEEECCcCC-CcccceEEEEECCCCeEEec
Confidence            378999999999988 44432 2222         278999999999 4321 12235799999999999864

>PHA03098 kelch-like protein; Provisional

Probab=97.64  E-value=0.0033  Score=58.70  Aligned_cols=124  Identities=12%  Similarity=-0.114  Sum_probs=77.0

Q ss_pred             ccccCeEEEeeecc----CCceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeec--CC
Q 042334          110 EFVAYGLLLLQDCW----AGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGRE--PR  183 (266)
Q Consensus       110 ~s~~~Glll~~~~~----~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~--~~  183 (266)
                      .. .+|-+.+..+.    .....+.++||.|.+|..+++.+..+.         ...+..++    + +|+.+...  ..
T Consensus       386 ~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~---------~~~~~~~~----~-~iyv~GG~~~~~  450 (534)
T PHA03098        386 VN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHY---------GGCAIYHD----G-KIYVIGGISYID  450 (534)
T ss_pred             EE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcccc---------CceEEEEC----C-EEEEECCccCCC
Confidence            44 67777665532    112568899999999999988775421         11122222    2 34444221  11


Q ss_pred             ---CcceEEEEEcCCCCcccc-CCCccccccchhhhccccccceEEcCeEeee-eccCCCCCccEEEEEEcCCCeecccC
Q 042334          184 ---NNLEIEVYTLGTHSWRHA-SPSSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFGSDHEARIISFDFKNEQLNETP  258 (266)
Q Consensus       184 ---~~~~~~vyss~t~~W~~~-~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~~~~~~~il~fD~~~~~~~~i~  258 (266)
                         ....+++|+..++.|+.+ ..|.. ....         ..+.++|.+|.+ ... .......+..||+.+.+|..++
T Consensus       451 ~~~~~~~v~~yd~~~~~W~~~~~~~~~-r~~~---------~~~~~~~~iyv~GG~~-~~~~~~~v~~yd~~~~~W~~~~  519 (534)
T PHA03098        451 NIKVYNIVESYNPVTNKWTELSSLNFP-RINA---------SLCIFNNKIYVVGGDK-YEYYINEIEVYDDKTNTWTLFC  519 (534)
T ss_pred             CCcccceEEEecCCCCceeeCCCCCcc-cccc---------eEEEECCEEEEEcCCc-CCcccceeEEEeCCCCEEEecC
Confidence               134599999999999988 44432 1122         256779999998 332 1222457999999999999884


Q ss_pred             C
Q 042334          259 L  259 (266)
Q Consensus       259 l  259 (266)
                      -
T Consensus       520 ~  520 (534)
T PHA03098        520 K  520 (534)
T ss_pred             C
Confidence            3

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.62  E-value=4.4e-05  Score=64.42  Aligned_cols=40  Identities=23%  Similarity=0.326  Sum_probs=36.6

Q ss_pred             CCCCCCHHHHHHHhccCChhhHHHHHhhhHhHHHHhcCCHH
Q 042334            4 SEVKVPADIVYEIFIRLPVKSLMRFRSISKSWRDIIDGSLR   44 (266)
Q Consensus         4 ~~~~LP~Dll~~IL~rLP~~~l~r~~~VcK~Wr~~i~~s~~   44 (266)
                      .+.+||||+++.||+.|+.|+|.++..|||+|+++.+ +.+
T Consensus        97 ~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~-de~  136 (419)
T KOG2120|consen   97 SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLAS-DES  136 (419)
T ss_pred             CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccc-ccc
Confidence            3688999999999999999999999999999999988 443

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=97.45  E-value=0.0029  Score=55.14  Aligned_cols=127  Identities=13%  Similarity=0.120  Sum_probs=72.8

Q ss_pred             cCeEEEeeecc---CCceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeec-CCCcceE
Q 042334          113 AYGLLLLQDCW---AGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGRE-PRNNLEI  188 (266)
Q Consensus       113 ~~Glll~~~~~---~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~-~~~~~~~  188 (266)
                      .+|.|-+.-+.   .....+.++||.|.+|..+++.+... +..      . ....++     =||+++... ......+
T Consensus       122 ~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~-r~~------~-~~~~~~-----~~iYv~GG~~~~~~~~~  188 (323)
T TIGR03548       122 KDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEP-RVQ------P-VCVKLQ-----NELYVFGGGSNIAYTDG  188 (323)
T ss_pred             ECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCC-CCc------c-eEEEEC-----CEEEEEcCCCCccccce
Confidence            56666554432   12357899999999999998765321 101      1 111221     245555322 2223457


Q ss_pred             EEEEcCCCCcccc-CCCcc-cc---ccchhhhccccccceEEcCeEeee-eccCC-------------------------
Q 042334          189 EVYTLGTHSWRHA-SPSSI-RL---SNNKLQLQCLSEFGLSAYGDMHWK-NWEFG-------------------------  237 (266)
Q Consensus       189 ~vyss~t~~W~~~-~~p~~-~~---~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~-------------------------  237 (266)
                      ++|+..++.|+.+ .++.. ..   ....        ..+..+|.||-+ .....                         
T Consensus       189 ~~yd~~~~~W~~~~~~~~~~~p~~~~~~~--------~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (323)
T TIGR03548       189 YKYSPKKNQWQKVADPTTDSEPISLLGAA--------SIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYF  260 (323)
T ss_pred             EEEecCCCeeEECCCCCCCCCceecccee--------EEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHh
Confidence            8999999999988 33211 11   0111        123457899988 32210                         


Q ss_pred             ------CCCccEEEEEEcCCCeecccC-CC
Q 042334          238 ------SDHEARIISFDFKNEQLNETP-LP  260 (266)
Q Consensus       238 ------~~~~~~il~fD~~~~~~~~i~-lP  260 (266)
                            ......+.+||+.+++|+.+. +|
T Consensus       261 ~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p  290 (323)
T TIGR03548       261 LKPPEWYNWNRKILIYNVRTGKWKSIGNSP  290 (323)
T ss_pred             CCCccccCcCceEEEEECCCCeeeEccccc
Confidence                  001246999999999999884 55

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=97.45  E-value=0.0042  Score=54.15  Aligned_cols=107  Identities=7%  Similarity=-0.056  Sum_probs=67.9

Q ss_pred             eeEEEEcccccce----eccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEee--cCCCcceEEEEEcCCCCccc
Q 042334          127 NKLFLCNPLRGEV----LELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGR--EPRNNLEIEVYTLGTHSWRH  200 (266)
Q Consensus       127 ~~~~V~NP~T~~~----~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~--~~~~~~~~~vyss~t~~W~~  200 (266)
                      ..++.+|+.+++|    ..+|+++..+.         ...+..++     -+|+++..  .......+++|+..++.|..
T Consensus        88 ~~v~~~d~~~~~w~~~~~~~~~lp~~~~---------~~~~~~~~-----~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~  153 (323)
T TIGR03548        88 SSVYRITLDESKEELICETIGNLPFTFE---------NGSACYKD-----GTLYVGGGNRNGKPSNKSYLFNLETQEWFE  153 (323)
T ss_pred             eeEEEEEEcCCceeeeeeEcCCCCcCcc---------CceEEEEC-----CEEEEEeCcCCCccCceEEEEcCCCCCeeE
Confidence            5788889999887    67777764421         11122222     25555532  22234679999999999998


Q ss_pred             c-CCCccccccchhhhccccccceEEcCeEeee-eccCCCCCccEEEEEEcCCCeecccC
Q 042334          201 A-SPSSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFGSDHEARIISFDFKNEQLNETP  258 (266)
Q Consensus       201 ~-~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~~~~~~~il~fD~~~~~~~~i~  258 (266)
                      + .+|.......         ..+.++|.||.+ ....  .....+.+||+++++|..++
T Consensus       154 ~~~~p~~~r~~~---------~~~~~~~~iYv~GG~~~--~~~~~~~~yd~~~~~W~~~~  202 (323)
T TIGR03548       154 LPDFPGEPRVQP---------VCVKLQNELYVFGGGSN--IAYTDGYKYSPKKNQWQKVA  202 (323)
T ss_pred             CCCCCCCCCCcc---------eEEEECCEEEEEcCCCC--ccccceEEEecCCCeeEECC
Confidence            8 5554322222         256889999999 3321  11224689999999999884

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PLN02153 epithiospecifier protein

Probab=97.23  E-value=0.01  Score=52.11  Aligned_cols=111  Identities=11%  Similarity=0.004  Sum_probs=65.9

Q ss_pred             eeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeec----------CCCcceEEEEEcCCC
Q 042334          127 NKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGRE----------PRNNLEIEVYTLGTH  196 (266)
Q Consensus       127 ~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~----------~~~~~~~~vyss~t~  196 (266)
                      ..+.++||.|.+|..+|..........     ...+ ..++     =|+++++..          ......+++|+..++
T Consensus       159 ~~v~~yd~~~~~W~~l~~~~~~~~~r~-----~~~~-~~~~-----~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~  227 (341)
T PLN02153        159 RTIEAYNIADGKWVQLPDPGENFEKRG-----GAGF-AVVQ-----GKIWVVYGFATSILPGGKSDYESNAVQFFDPASG  227 (341)
T ss_pred             ceEEEEECCCCeEeeCCCCCCCCCCCC-----cceE-EEEC-----CeEEEEeccccccccCCccceecCceEEEEcCCC
Confidence            368899999999999987642211111     1111 1121     134443211          011357999999999


Q ss_pred             CccccC----CCccccccchhhhccccccceEEcCeEeee-eccCC--------CCCccEEEEEEcCCCeecccC
Q 042334          197 SWRHAS----PSSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFG--------SDHEARIISFDFKNEQLNETP  258 (266)
Q Consensus       197 ~W~~~~----~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~--------~~~~~~il~fD~~~~~~~~i~  258 (266)
                      .|..+.    .|.. ....         ..+.++|.||-+ .....        ......+.+||+.+.+|+.+.
T Consensus       228 ~W~~~~~~g~~P~~-r~~~---------~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~  292 (341)
T PLN02153        228 KWTEVETTGAKPSA-RSVF---------AHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLG  292 (341)
T ss_pred             cEEeccccCCCCCC-ccee---------eeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEecc
Confidence            999883    2321 1122         267889999999 43210        111246899999999999773

>PLN02193 nitrile-specifier protein

Probab=97.04  E-value=0.019  Score=52.85  Aligned_cols=127  Identities=11%  Similarity=0.071  Sum_probs=74.7

Q ss_pred             cCeEEEeeecc---CCceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEee--cCCCcce
Q 042334          113 AYGLLLLQDCW---AGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGR--EPRNNLE  187 (266)
Q Consensus       113 ~~Glll~~~~~---~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~--~~~~~~~  187 (266)
                      .++.|.+.-+.   .....++++||.|.+|..+++.......+.     .  ......    +-||+++..  .......
T Consensus       227 ~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~-----~--h~~~~~----~~~iYv~GG~~~~~~~~~  295 (470)
T PLN02193        227 IGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRS-----F--HSMAAD----EENVYVFGGVSATARLKT  295 (470)
T ss_pred             ECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCcc-----c--eEEEEE----CCEEEEECCCCCCCCcce
Confidence            56666555432   123578999999999999987632111001     1  112111    235666632  2223457


Q ss_pred             EEEEEcCCCCccccCCCccccccchhhhccccccceEEcCeEeee-eccCCCCCccEEEEEEcCCCeecccC
Q 042334          188 IEVYTLGTHSWRHASPSSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFGSDHEARIISFDFKNEQLNETP  258 (266)
Q Consensus       188 ~~vyss~t~~W~~~~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~~~~~~~il~fD~~~~~~~~i~  258 (266)
                      +++|+..++.|+.+..|.........      ...+.++|.+|.+ ..+ . .....+..||+.+.+|+.++
T Consensus       296 ~~~yd~~t~~W~~~~~~~~~~~~R~~------~~~~~~~gkiyviGG~~-g-~~~~dv~~yD~~t~~W~~~~  359 (470)
T PLN02193        296 LDSYNIVDKKWFHCSTPGDSFSIRGG------AGLEVVQGKVWVVYGFN-G-CEVDDVHYYDPVQDKWTQVE  359 (470)
T ss_pred             EEEEECCCCEEEeCCCCCCCCCCCCC------cEEEEECCcEEEEECCC-C-CccCceEEEECCCCEEEEec
Confidence            89999999999987433221111110      0256789999988 322 1 12357999999999999873

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=97.03  E-value=0.0079  Score=53.68  Aligned_cols=67  Identities=15%  Similarity=0.165  Sum_probs=44.8

Q ss_pred             ceEEEEEcCCCCcccc-CCCccccccchhhhccccccceEEcCeEeee-eccC-C-CCCccEEEEEEcCCCeeccc-CCC
Q 042334          186 LEIEVYTLGTHSWRHA-SPSSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEF-G-SDHEARIISFDFKNEQLNET-PLP  260 (266)
Q Consensus       186 ~~~~vyss~t~~W~~~-~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~-~-~~~~~~il~fD~~~~~~~~i-~lP  260 (266)
                      ..+++|+..++.|... .+|........         .+.+++.||.+ .... + .........||.++.+|..+ ++|
T Consensus       189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a---------~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p  259 (376)
T PRK14131        189 KEVLSYDPSTNQWKNAGESPFLGTAGSA---------VVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLP  259 (376)
T ss_pred             ceEEEEECCCCeeeECCcCCCCCCCcce---------EEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCC
Confidence            4689999999999988 55543222222         57789999999 4321 1 12234556778899999877 555


Q ss_pred             C
Q 042334          261 D  261 (266)
Q Consensus       261 ~  261 (266)
                      .
T Consensus       260 ~  260 (376)
T PRK14131        260 P  260 (376)
T ss_pred             C
Confidence            4

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=96.98  E-value=0.011  Score=51.94  Aligned_cols=67  Identities=15%  Similarity=0.143  Sum_probs=42.2

Q ss_pred             ceEEEEEcCCCCcccc-CCCccccccchhhhccccccceEEcCeEeee-eccCCCCCccEE--EEEEcCCCeeccc-CCC
Q 042334          186 LEIEVYTLGTHSWRHA-SPSSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFGSDHEARI--ISFDFKNEQLNET-PLP  260 (266)
Q Consensus       186 ~~~~vyss~t~~W~~~-~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~~~~~~~i--l~fD~~~~~~~~i-~lP  260 (266)
                      ..+++|+..++.|+.+ .+|........         .+.++|+||.+ ...........+  ..+|.++.+|..+ ++|
T Consensus       168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~---------~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~  238 (346)
T TIGR03547       168 KNVLSYDPSTNQWRNLGENPFLGTAGSA---------IVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLP  238 (346)
T ss_pred             ceEEEEECCCCceeECccCCCCcCCCce---------EEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCC
Confidence            5799999999999998 55532222222         56889999999 432111112234  4445577799877 555


Q ss_pred             C
Q 042334          261 D  261 (266)
Q Consensus       261 ~  261 (266)
                      .
T Consensus       239 ~  239 (346)
T TIGR03547       239 P  239 (346)
T ss_pred             C
Confidence            4

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PLN02153 epithiospecifier protein

Probab=96.91  E-value=0.014  Score=51.39  Aligned_cols=113  Identities=11%  Similarity=0.044  Sum_probs=67.4

Q ss_pred             eeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeec--CCCcceEEEEEcCCCCcccc-CC
Q 042334          127 NKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGRE--PRNNLEIEVYTLGTHSWRHA-SP  203 (266)
Q Consensus       127 ~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~--~~~~~~~~vyss~t~~W~~~-~~  203 (266)
                      ..++++|+.+.+|..+++......  ..   ........+     +=||+++...  ......+++|+..++.|+.+ .+
T Consensus        50 ~~~~~yd~~~~~W~~~~~~~~~p~--~~---~~~~~~~~~-----~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~  119 (341)
T PLN02153         50 KDLYVFDFNTHTWSIAPANGDVPR--IS---CLGVRMVAV-----GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKL  119 (341)
T ss_pred             CcEEEEECCCCEEEEcCccCCCCC--Cc---cCceEEEEE-----CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccC
Confidence            468999999999999886542110  00   001111111     1356666322  22335789999999999977 33


Q ss_pred             -----CccccccchhhhccccccceEEcCeEeee-eccCC-----CCCccEEEEEEcCCCeecccCC
Q 042334          204 -----SSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFG-----SDHEARIISFDFKNEQLNETPL  259 (266)
Q Consensus       204 -----p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~-----~~~~~~il~fD~~~~~~~~i~l  259 (266)
                           |.. ....         ..+..+|+||.+ .....     ...-..+.+||+++.+|..++.
T Consensus       120 ~~~~~p~~-R~~~---------~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~  176 (341)
T PLN02153        120 DEEGGPEA-RTFH---------SMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPD  176 (341)
T ss_pred             CCCCCCCC-ceee---------EEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCC
Confidence                 211 1122         257889999998 33211     0012368899999999998753

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=96.80  E-value=0.0011  Score=56.28  Aligned_cols=43  Identities=12%  Similarity=0.287  Sum_probs=38.3

Q ss_pred             CCCCHHHHHHHhccCC-----hhhHHHHHhhhHhHHHHhcCCHHHHHHH
Q 042334            6 VKVPADIVYEIFIRLP-----VKSLMRFRSISKSWRDIIDGSLRFANMH   49 (266)
Q Consensus         6 ~~LP~Dll~~IL~rLP-----~~~l~r~~~VcK~Wr~~i~~s~~F~~~~   49 (266)
                      ..||||++.+||.++=     +.+|.++.+|||.|+-.++ +++|-+..
T Consensus       108 ~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R-~~~lwR~a  155 (366)
T KOG2997|consen  108 SVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCAR-DPELWRLA  155 (366)
T ss_pred             hhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHc-ChHHHHHH
Confidence            4699999999998764     5999999999999999999 99987764

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=96.73  E-value=0.0011  Score=56.78  Aligned_cols=38  Identities=21%  Similarity=0.364  Sum_probs=35.2

Q ss_pred             CCCC----HHHHHHHhccCChhhHHHHHhhhHhHHHHhcCCHH
Q 042334            6 VKVP----ADIVYEIFIRLPVKSLMRFRSISKSWRDIIDGSLR   44 (266)
Q Consensus         6 ~~LP----~Dll~~IL~rLP~~~l~r~~~VcK~Wr~~i~~s~~   44 (266)
                      ..||    +++.+.||++|...+|..|..|||+|+++++ ++-
T Consensus        76 ~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~-dg~  117 (499)
T KOG0281|consen   76 TALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLS-DGM  117 (499)
T ss_pred             HhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhc-cch
Confidence            4588    9999999999999999999999999999999 774

>PLN02193 nitrile-specifier protein

Probab=96.70  E-value=0.042  Score=50.61  Aligned_cols=114  Identities=9%  Similarity=0.037  Sum_probs=67.2

Q ss_pred             eeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeec--CCCcceEEEEEcCCCCcccc-CC
Q 042334          127 NKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGRE--PRNNLEIEVYTLGTHSWRHA-SP  203 (266)
Q Consensus       127 ~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~--~~~~~~~~vyss~t~~W~~~-~~  203 (266)
                      ..++++|+.+.+|..+|+.........     .......++     =+++++...  ......+++|++.++.|+.+ ..
T Consensus       193 ~~v~~yD~~~~~W~~~~~~g~~P~~~~-----~~~~~v~~~-----~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~  262 (470)
T PLN02193        193 KHLYVFDLETRTWSISPATGDVPHLSC-----LGVRMVSIG-----STLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPV  262 (470)
T ss_pred             CcEEEEECCCCEEEeCCCCCCCCCCcc-----cceEEEEEC-----CEEEEECCCCCCCCCccEEEEECCCCEEEEcCcC
Confidence            358999999999998775421100000     011111221     245555221  22345789999999999987 32


Q ss_pred             Cc--cccccchhhhccccccceEEcCeEeee-eccCCCCCccEEEEEEcCCCeecccCCC
Q 042334          204 SS--IRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFGSDHEARIISFDFKNEQLNETPLP  260 (266)
Q Consensus       204 p~--~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~~~~~~~il~fD~~~~~~~~i~lP  260 (266)
                      +.  ......         ..+.+++.||.+ ... .......+.+||+.+.+|..++.|
T Consensus       263 ~~~P~~R~~h---------~~~~~~~~iYv~GG~~-~~~~~~~~~~yd~~t~~W~~~~~~  312 (470)
T PLN02193        263 EEGPTPRSFH---------SMAADEENVYVFGGVS-ATARLKTLDSYNIVDKKWFHCSTP  312 (470)
T ss_pred             CCCCCCccce---------EEEEECCEEEEECCCC-CCCCcceEEEEECCCCEEEeCCCC
Confidence            11  111112         256789999998 332 112235688999999999988654

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=96.55  E-value=0.062  Score=47.24  Aligned_cols=124  Identities=11%  Similarity=0.068  Sum_probs=71.4

Q ss_pred             cCeEEEeeeccCCceeEEEEcc--cccceeccCCCCC-CCCCCCcCCCCcceeeeeecCCCCCeEEEEEeecC--C----
Q 042334          113 AYGLLLLQDCWAGRNKLFLCNP--LRGEVLELPKPLQ-DCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGREP--R----  183 (266)
Q Consensus       113 ~~Glll~~~~~~~~~~~~V~NP--~T~~~~~lP~~~~-~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~--~----  183 (266)
                      .++-|-+..+. ....++++++  .+++|..+|+++. .+.  .     ..  ....+     -+|+++....  .    
T Consensus        16 ~~~~vyv~GG~-~~~~~~~~d~~~~~~~W~~l~~~p~~~R~--~-----~~--~~~~~-----~~iYv~GG~~~~~~~~~   80 (346)
T TIGR03547        16 IGDKVYVGLGS-AGTSWYKLDLKKPSKGWQKIADFPGGPRN--Q-----AV--AAAID-----GKLYVFGGIGKANSEGS   80 (346)
T ss_pred             ECCEEEEEccc-cCCeeEEEECCCCCCCceECCCCCCCCcc--c-----ce--EEEEC-----CEEEEEeCCCCCCCCCc
Confidence            45555444321 2346777774  6789999998863 211  0     11  11121     2566663221  1    


Q ss_pred             --CcceEEEEEcCCCCccccCCCc-cccccchhhhccccccce-EEcCeEeee-eccCCC--------------------
Q 042334          184 --NNLEIEVYTLGTHSWRHASPSS-IRLSNNKLQLQCLSEFGL-SAYGDMHWK-NWEFGS--------------------  238 (266)
Q Consensus       184 --~~~~~~vyss~t~~W~~~~~p~-~~~~~~~~~~~~~~~~~v-~~~G~~yw~-~~~~~~--------------------  238 (266)
                        ....++.|+..++.|+.+..+. .......         .+ .++|+||.+ ......                    
T Consensus        81 ~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~---------~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~  151 (346)
T TIGR03547        81 PQVFDDVYRYDPKKNSWQKLDTRSPVGLLGAS---------GFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDK  151 (346)
T ss_pred             ceecccEEEEECCCCEEecCCCCCCCccccee---------EEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhh
Confidence              1357899999999999984221 1111111         33 689999998 332100                    


Q ss_pred             -------------CCccEEEEEEcCCCeeccc-CCC
Q 042334          239 -------------DHEARIISFDFKNEQLNET-PLP  260 (266)
Q Consensus       239 -------------~~~~~il~fD~~~~~~~~i-~lP  260 (266)
                                   .....+.+||+.+.+|+.+ ++|
T Consensus       152 ~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p  187 (346)
T TIGR03547       152 LIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENP  187 (346)
T ss_pred             hHHHHhCCChhHcCccceEEEEECCCCceeECccCC
Confidence                         0025799999999999988 555

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PF13964 Kelch_6: Kelch motif

Probab=95.73  E-value=0.03  Score=34.25  Aligned_cols=39  Identities=10%  Similarity=0.250  Sum_probs=30.4

Q ss_pred             ceEEcCeEeee-eccCCCCCccEEEEEEcCCCeeccc-CCC
Q 042334          222 GLSAYGDMHWK-NWEFGSDHEARIISFDFKNEQLNET-PLP  260 (266)
Q Consensus       222 ~v~~~G~~yw~-~~~~~~~~~~~il~fD~~~~~~~~i-~lP  260 (266)
                      .+.++|.||.+ ...........+..||+++.+|+.+ ++|
T Consensus         7 ~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp   47 (50)
T PF13964_consen    7 AVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMP   47 (50)
T ss_pred             EEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCC
Confidence            68999999999 3332234567899999999999988 554

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=95.49  E-value=0.16  Score=45.25  Aligned_cols=125  Identities=10%  Similarity=0.023  Sum_probs=69.7

Q ss_pred             cCeEEEeeeccCCceeEEEEccc--ccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeecC--------
Q 042334          113 AYGLLLLQDCWAGRNKLFLCNPL--RGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGREP--------  182 (266)
Q Consensus       113 ~~Glll~~~~~~~~~~~~V~NP~--T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~--------  182 (266)
                      .++-|.+..+. ....++++++.  +++|..+|+++.. .+ ..    ...  ...+     =+|+++....        
T Consensus        37 ~~~~iyv~gG~-~~~~~~~~d~~~~~~~W~~l~~~p~~-~r-~~----~~~--v~~~-----~~IYV~GG~~~~~~~~~~  102 (376)
T PRK14131         37 DNNTVYVGLGS-AGTSWYKLDLNAPSKGWTKIAAFPGG-PR-EQ----AVA--AFID-----GKLYVFGGIGKTNSEGSP  102 (376)
T ss_pred             ECCEEEEEeCC-CCCeEEEEECCCCCCCeEECCcCCCC-Cc-cc----ceE--EEEC-----CEEEEEcCCCCCCCCCce
Confidence            45555444332 23456777765  5789999877531 11 10    111  1111     2455542211        


Q ss_pred             CCcceEEEEEcCCCCccccCC--CccccccchhhhccccccceE-EcCeEeee-eccCCC--------------------
Q 042334          183 RNNLEIEVYTLGTHSWRHASP--SSIRLSNNKLQLQCLSEFGLS-AYGDMHWK-NWEFGS--------------------  238 (266)
Q Consensus       183 ~~~~~~~vyss~t~~W~~~~~--p~~~~~~~~~~~~~~~~~~v~-~~G~~yw~-~~~~~~--------------------  238 (266)
                      .....+++|+..++.|+.+..  |... ....         .+. ++|.||.+ ......                    
T Consensus       103 ~~~~~v~~YD~~~n~W~~~~~~~p~~~-~~~~---------~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~  172 (376)
T PRK14131        103 QVFDDVYKYDPKTNSWQKLDTRSPVGL-AGHV---------AVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDK  172 (376)
T ss_pred             eEcccEEEEeCCCCEEEeCCCCCCCcc-cceE---------EEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhh
Confidence            113578999999999999832  2221 1111         333 79999999 332100                    


Q ss_pred             -------------CCccEEEEEEcCCCeeccc-CCCC
Q 042334          239 -------------DHEARIISFDFKNEQLNET-PLPD  261 (266)
Q Consensus       239 -------------~~~~~il~fD~~~~~~~~i-~lP~  261 (266)
                                   .....+..||+.+.+|..+ ++|.
T Consensus       173 i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~  209 (376)
T PRK14131        173 INDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPF  209 (376)
T ss_pred             hHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCC
Confidence                         0125799999999999988 4553

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=94.69  E-value=1.2  Score=41.32  Aligned_cols=111  Identities=11%  Similarity=0.014  Sum_probs=65.5

Q ss_pred             eeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeec--C-CCcceEEEEEcCCCCccccCC
Q 042334          127 NKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGRE--P-RNNLEIEVYTLGTHSWRHASP  203 (266)
Q Consensus       127 ~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~--~-~~~~~~~vyss~t~~W~~~~~  203 (266)
                      ..+..+|+.|++|..+.+.....+..      .......++     =||+++...  . +....++||+..+..|..+..
T Consensus       139 ~~l~~~d~~t~~W~~l~~~~~~P~~r------~~Hs~~~~g-----~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~  207 (482)
T KOG0379|consen  139 NELHSLDLSTRTWSLLSPTGDPPPPR------AGHSATVVG-----TKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDT  207 (482)
T ss_pred             hheEeccCCCCcEEEecCcCCCCCCc------ccceEEEEC-----CEEEEECCccCcccceeeeeeeccccccceeccc
Confidence            37899999999999997665421111      111222222     344554222  1 246789999999999998832


Q ss_pred             Ccc---ccccchhhhccccccceEEcCeEeee-eccCCCCCccEEEEEEcCCCeeccc
Q 042334          204 SSI---RLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFGSDHEARIISFDFKNEQLNET  257 (266)
Q Consensus       204 p~~---~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~~~~~~~il~fD~~~~~~~~i  257 (266)
                      ...   ......         .+.+++.++.+ ........-.-+..||+.+.+|..+
T Consensus       208 ~g~~P~pR~gH~---------~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~  256 (482)
T KOG0379|consen  208 QGEAPSPRYGHA---------MVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLL  256 (482)
T ss_pred             CCCCCCCCCCce---------EEEECCeEEEEeccccCCceecceEeeecccceeeec
Confidence            221   112221         45555555555 2221233455799999999999833

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=93.64  E-value=0.29  Score=41.01  Aligned_cols=106  Identities=17%  Similarity=0.136  Sum_probs=65.0

Q ss_pred             eEEEEcccccceecc------CCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeecC--CCcceEEEEEcCCCCcc
Q 042334          128 KLFLCNPLRGEVLEL------PKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGREP--RNNLEIEVYTLGTHSWR  199 (266)
Q Consensus       128 ~~~V~NP~T~~~~~l------P~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~--~~~~~~~vyss~t~~W~  199 (266)
                      -++-++|-|.+|...      |+....          .....++     +.--|+..|+++  .....+++++..|-.|+
T Consensus       106 ~Ly~fDp~t~~W~~p~v~G~vPgaRDG----------HsAcV~g-----n~MyiFGGye~~a~~FS~d~h~ld~~TmtWr  170 (392)
T KOG4693|consen  106 LLYEFDPETNVWKKPEVEGFVPGARDG----------HSACVWG-----NQMYIFGGYEEDAQRFSQDTHVLDFATMTWR  170 (392)
T ss_pred             eeeeeccccccccccceeeecCCccCC----------ceeeEEC-----cEEEEecChHHHHHhhhccceeEeccceeee
Confidence            467778999988753      222111          1111222     233344444442  24457788888999999


Q ss_pred             cc---CCCccccccchhhhccccccceEEcCeEeee-eccC--C------CCCccEEEEEEcCCCeeccc
Q 042334          200 HA---SPSSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEF--G------SDHEARIISFDFKNEQLNET  257 (266)
Q Consensus       200 ~~---~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~--~------~~~~~~il~fD~~~~~~~~i  257 (266)
                      .+   ..|..-....+         ++..+|.+|-+ .+.+  +      ..+.+.|++||++++.|..-
T Consensus       171 ~~~Tkg~PprwRDFH~---------a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~  231 (392)
T KOG4693|consen  171 EMHTKGDPPRWRDFHT---------ASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRT  231 (392)
T ss_pred             ehhccCCCchhhhhhh---------hhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccC
Confidence            98   44544333333         67788999988 4432  1      24456899999999999754

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=93.19  E-value=0.18  Score=30.09  Aligned_cols=36  Identities=6%  Similarity=0.066  Sum_probs=29.9

Q ss_pred             ceEEcCeEeee-eccCCCCCccEEEEEEcCCCeeccc
Q 042334          222 GLSAYGDMHWK-NWEFGSDHEARIISFDFKNEQLNET  257 (266)
Q Consensus       222 ~v~~~G~~yw~-~~~~~~~~~~~il~fD~~~~~~~~i  257 (266)
                      .+.++|.||-+ ...........+..||+.+.+|..+
T Consensus         7 ~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~   43 (47)
T PF01344_consen    7 AVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEEL   43 (47)
T ss_dssp             EEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEE
T ss_pred             EEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEc
Confidence            78999999999 4443356677999999999999987

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF13964 Kelch_6: Kelch motif

Probab=93.03  E-value=0.22  Score=30.27  Aligned_cols=22  Identities=18%  Similarity=0.138  Sum_probs=19.8

Q ss_pred             ceeEEEEcccccceeccCCCCC
Q 042334          126 RNKLFLCNPLRGEVLELPKPLQ  147 (266)
Q Consensus       126 ~~~~~V~NP~T~~~~~lP~~~~  147 (266)
                      ...+.++||.|++|..+|+++.
T Consensus        27 ~~~v~~yd~~t~~W~~~~~mp~   48 (50)
T PF13964_consen   27 SNDVERYDPETNTWEQLPPMPT   48 (50)
T ss_pred             cccEEEEcCCCCcEEECCCCCC
Confidence            5689999999999999998874

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=92.72  E-value=4.1  Score=35.89  Aligned_cols=134  Identities=14%  Similarity=0.157  Sum_probs=72.4

Q ss_pred             eEEeccccCeEEEeeeccCCceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeecCC--
Q 042334          106 YVFVEFVAYGLLLLQDCWAGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGREPR--  183 (266)
Q Consensus       106 ~~~~~s~~~Glll~~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~--  183 (266)
                      +....- .+.-|++.+   .....+|+++.|+....+|.+....  ..       -+.+..    + -+|+++.....  
T Consensus        69 ~~F~al-~gskIv~~d---~~~~t~vyDt~t~av~~~P~l~~pk--~~-------pisv~V----G-~~LY~m~~~~~~~  130 (342)
T PF07893_consen   69 MDFFAL-HGSKIVAVD---QSGRTLVYDTDTRAVATGPRLHSPK--RC-------PISVSV----G-DKLYAMDRSPFPE  130 (342)
T ss_pred             eEEEEe-cCCeEEEEc---CCCCeEEEECCCCeEeccCCCCCCC--cc-------eEEEEe----C-CeEEEeeccCccc
Confidence            334443 455565555   3567899999999999888865321  11       122222    1 22666632211  


Q ss_pred             --Cc---ceEEEE--E------cCC--CCcccc-CCCccccccchhhhccccccceEEcCeEeeeeccCCCCCccEEEEE
Q 042334          184 --NN---LEIEVY--T------LGT--HSWRHA-SPSSIRLSNNKLQLQCLSEFGLSAYGDMHWKNWEFGSDHEARIISF  247 (266)
Q Consensus       184 --~~---~~~~vy--s------s~t--~~W~~~-~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~il~f  247 (266)
                        ..   ...|++  +      ...  -.|+.. ..|+.......  .....+++|+ +|.--|++...   ....-.+|
T Consensus       131 ~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~--~~~i~sYavv-~g~~I~vS~~~---~~~GTysf  204 (342)
T PF07893_consen  131 PAGRPDFPCFEALVYRPPPDDPSPEESWSWRSLPPPPFVRDRRYS--DYRITSYAVV-DGRTIFVSVNG---RRWGTYSF  204 (342)
T ss_pred             cccCccceeEEEeccccccccccCCCcceEEcCCCCCccccCCcc--cceEEEEEEe-cCCeEEEEecC---CceEEEEE
Confidence              10   044444  4      122  356666 33333222110  0002235677 99888983330   01369999


Q ss_pred             EcCCCeeccc---CCCCCC
Q 042334          248 DFKNEQLNET---PLPDFR  263 (266)
Q Consensus       248 D~~~~~~~~i---~lP~~~  263 (266)
                      |+.+.+|+.+   .||..+
T Consensus       205 Dt~~~~W~~~GdW~LPF~G  223 (342)
T PF07893_consen  205 DTESHEWRKHGDWMLPFHG  223 (342)
T ss_pred             EcCCcceeeccceecCcCC
Confidence            9999999988   888765

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=92.32  E-value=0.45  Score=28.82  Aligned_cols=38  Identities=16%  Similarity=0.222  Sum_probs=30.8

Q ss_pred             ceEEcCeEeee-ec--cCCCCCccEEEEEEcCCCeecccCC
Q 042334          222 GLSAYGDMHWK-NW--EFGSDHEARIISFDFKNEQLNETPL  259 (266)
Q Consensus       222 ~v~~~G~~yw~-~~--~~~~~~~~~il~fD~~~~~~~~i~l  259 (266)
                      .+.++|+||.. ..  ........-+..||+++.+|+.++.
T Consensus         7 ~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~   47 (49)
T PF07646_consen    7 AVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP   47 (49)
T ss_pred             EEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence            78999999999 44  3445667789999999999998854

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=91.34  E-value=2.1  Score=36.26  Aligned_cols=105  Identities=14%  Similarity=0.186  Sum_probs=67.4

Q ss_pred             eEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeecCCCcceEEEEEcCCCCccccCCCccc
Q 042334          128 KLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGREPRNNLEIEVYTLGTHSWRHASPSSIR  207 (266)
Q Consensus       128 ~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~vyss~t~~W~~~~~p~~~  207 (266)
                      .+.-.||.++.-..+|.+.....         ..-.+..|+...    +.+.  ....-.+.-|+..+.+|.+-.+|..-
T Consensus       211 aiaridp~~~~aev~p~P~~~~~---------gsRriwsdpig~----~wit--twg~g~l~rfdPs~~sW~eypLPgs~  275 (353)
T COG4257         211 AIARIDPFAGHAEVVPQPNALKA---------GSRRIWSDPIGR----AWIT--TWGTGSLHRFDPSVTSWIEYPLPGSK  275 (353)
T ss_pred             ceEEcccccCCcceecCCCcccc---------cccccccCccCc----EEEe--ccCCceeeEeCcccccceeeeCCCCC
Confidence            45556999997777777654211         111344444311    2222  12355778899999899998777654


Q ss_pred             cccchhhhccccccceEEcC-eEeee-eccCCCCCccEEEEEEcCCCeecccCCCCC
Q 042334          208 LSNNKLQLQCLSEFGLSAYG-DMHWK-NWEFGSDHEARIISFDFKNEQLNETPLPDF  262 (266)
Q Consensus       208 ~~~~~~~~~~~~~~~v~~~G-~~yw~-~~~~~~~~~~~il~fD~~~~~~~~i~lP~~  262 (266)
                      ....          .+++|. -.-|+ ..+     ...|+.||.++++|+++++|..
T Consensus       276 arpy----------s~rVD~~grVW~sea~-----agai~rfdpeta~ftv~p~pr~  317 (353)
T COG4257         276 ARPY----------SMRVDRHGRVWLSEAD-----AGAIGRFDPETARFTVLPIPRP  317 (353)
T ss_pred             CCcc----------eeeeccCCcEEeeccc-----cCceeecCcccceEEEecCCCC
Confidence            3332          455553 45677 333     6799999999999999988864

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=91.03  E-value=0.2  Score=44.67  Aligned_cols=37  Identities=22%  Similarity=0.409  Sum_probs=34.2

Q ss_pred             CCCHHHHHHHhccCChhhHHHHHhhhHhHHHHhcCCHH
Q 042334            7 KVPADIVYEIFIRLPVKSLMRFRSISKSWRDIIDGSLR   44 (266)
Q Consensus         7 ~LP~Dll~~IL~rLP~~~l~r~~~VcK~Wr~~i~~s~~   44 (266)
                      .||.|++.+||+.|..+++.|++.+||.|+.... |..
T Consensus        74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~Al-D~~  110 (483)
T KOG4341|consen   74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLAL-DGS  110 (483)
T ss_pred             cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhh-ccc
Confidence            5999999999999999999999999999999887 543

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=88.62  E-value=0.24  Score=46.31  Aligned_cols=47  Identities=17%  Similarity=0.404  Sum_probs=38.6

Q ss_pred             CCCCHHHHHHHhccCChhhHHHHHhhhHhHHHHhcCCHHHHHHHHhc
Q 042334            6 VKVPADIVYEIFIRLPVKSLMRFRSISKSWRDIIDGSLRFANMHMST   52 (266)
Q Consensus         6 ~~LP~Dll~~IL~rLP~~~l~r~~~VcK~Wr~~i~~s~~F~~~~~~~   52 (266)
                      ..||.++...||..|+.+++.+++.||+.|+.++.++..-.+.+...
T Consensus       109 ~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~  155 (537)
T KOG0274|consen  109 SLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCREL  155 (537)
T ss_pred             hcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhh
Confidence            46999999999999999999999999999999999444444344333

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=88.47  E-value=1.8  Score=36.50  Aligned_cols=120  Identities=12%  Similarity=0.077  Sum_probs=66.7

Q ss_pred             CceeEEEEcccccceeccCCCCCC--CCCCCc-CCC-CcceeeeeecCCCCCeEEEEEeec--CCCcceEEEEEcCCCCc
Q 042334          125 GRNKLFLCNPLRGEVLELPKPLQD--CSKDFL-LPR-SLTSYGIGFDSATNSYKIVRLGRE--PRNNLEIEVYTLGTHSW  198 (266)
Q Consensus       125 ~~~~~~V~NP~T~~~~~lP~~~~~--~~~~~~-~~~-~~~~~~l~~d~~~~~ykvv~~~~~--~~~~~~~~vyss~t~~W  198 (266)
                      ..-.+-|.|-.+-+|..+|+.-..  ....+. .|- .+......|+.    -..+...+.  .+..-....|+.+++.|
T Consensus        42 ~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d----~~yvWGGRND~egaCN~Ly~fDp~t~~W  117 (392)
T KOG4693|consen   42 DPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQD----KAYVWGGRNDDEGACNLLYEFDPETNVW  117 (392)
T ss_pred             CcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcc----eEEEEcCccCcccccceeeeeccccccc
Confidence            455788889999999999884322  111111 000 01111112211    112222222  23455777899999999


Q ss_pred             cccCC----CccccccchhhhccccccceEEcCeEeee--eccCCCCCccEEEEEEcCCCeecccC
Q 042334          199 RHASP----SSIRLSNNKLQLQCLSEFGLSAYGDMHWK--NWEFGSDHEARIISFDFKNEQLNETP  258 (266)
Q Consensus       199 ~~~~~----p~~~~~~~~~~~~~~~~~~v~~~G~~yw~--~~~~~~~~~~~il~fD~~~~~~~~i~  258 (266)
                      +..+.    |.... ..+         +.+.+..+|-+  .+++-.....-+..+|+.+.+|+.+.
T Consensus       118 ~~p~v~G~vPgaRD-GHs---------AcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~  173 (392)
T KOG4693|consen  118 KKPEVEGFVPGARD-GHS---------ACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMH  173 (392)
T ss_pred             cccceeeecCCccC-Cce---------eeEECcEEEEecChHHHHHhhhccceeEeccceeeeehh
Confidence            98733    32211 222         56667777777  33322233456899999999999983

>smart00612 Kelch Kelch domain

Probab=88.39  E-value=0.93  Score=26.49  Aligned_cols=22  Identities=27%  Similarity=0.416  Sum_probs=17.5

Q ss_pred             CcceEEEEEcCCCCcccc-CCCc
Q 042334          184 NNLEIEVYTLGTHSWRHA-SPSS  205 (266)
Q Consensus       184 ~~~~~~vyss~t~~W~~~-~~p~  205 (266)
                      ....+++|+..++.|+.. ++|.
T Consensus        13 ~~~~v~~yd~~~~~W~~~~~~~~   35 (47)
T smart00612       13 RLKSVEVYDPETNKWTPLPSMPT   35 (47)
T ss_pred             eeeeEEEECCCCCeEccCCCCCC
Confidence            356789999999999988 5443

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=84.41  E-value=1.6  Score=26.17  Aligned_cols=36  Identities=8%  Similarity=0.050  Sum_probs=21.2

Q ss_pred             ceEE-cCeEeee-eccCCCCCccEEEEEEcCCCeeccc
Q 042334          222 GLSA-YGDMHWK-NWEFGSDHEARIISFDFKNEQLNET  257 (266)
Q Consensus       222 ~v~~-~G~~yw~-~~~~~~~~~~~il~fD~~~~~~~~i  257 (266)
                      .+.+ ++.+|-. ..+.....-.-+..||+++.+|+.+
T Consensus         7 ~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~   44 (49)
T PF13418_consen    7 AVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRL   44 (49)
T ss_dssp             EEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-
T ss_pred             EEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEEC
Confidence            4455 4777777 3332112344688999999999988

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=82.74  E-value=15  Score=33.99  Aligned_cols=113  Identities=13%  Similarity=0.096  Sum_probs=62.9

Q ss_pred             eEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEe-ec--CCCcceEEEEEcCCCCccccC--
Q 042334          128 KLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLG-RE--PRNNLEIEVYTLGTHSWRHAS--  202 (266)
Q Consensus       128 ~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-~~--~~~~~~~~vyss~t~~W~~~~--  202 (266)
                      .++|+|--++.|......-........    .....++       =+++.+. ..  ......+.+|+..|+.|+...  
T Consensus        89 dl~~~d~~~~~w~~~~~~g~~p~~r~g----~~~~~~~-------~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~  157 (482)
T KOG0379|consen   89 DLYVLDLESQLWTKPAATGDEPSPRYG----HSLSAVG-------DKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPT  157 (482)
T ss_pred             eeEEeecCCcccccccccCCCCCcccc----eeEEEEC-------CeEEEEccccCCCCChhheEeccCCCCcEEEecCc
Confidence            589999888777655443322111111    1111222       3444442 22  223458889999999999882  


Q ss_pred             -CCccccccchhhhccccccceEEcCeEeee-eccCCCCCccEEEEEEcCCCeecccCCC
Q 042334          203 -PSSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFGSDHEARIISFDFKNEQLNETPLP  260 (266)
Q Consensus       203 -~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~~~~~~~il~fD~~~~~~~~i~lP  260 (266)
                       .+.......+         .+.++-.+|.. ..+.....-+-+.+||+++.+|..+...
T Consensus       158 ~~~P~~r~~Hs---------~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~  208 (482)
T KOG0379|consen  158 GDPPPPRAGHS---------ATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQ  208 (482)
T ss_pred             CCCCCCcccce---------EEEECCEEEEECCccCcccceeeeeeeccccccceecccC
Confidence             2122122222         44555566666 3332222466899999999999988443

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=82.19  E-value=3.3  Score=24.88  Aligned_cols=23  Identities=22%  Similarity=0.338  Sum_probs=18.1

Q ss_pred             ccEEEEEEcCCCeeccc-CCCCCC
Q 042334          241 EARIISFDFKNEQLNET-PLPDFR  263 (266)
Q Consensus       241 ~~~il~fD~~~~~~~~i-~lP~~~  263 (266)
                      ..-+.+||+.+.+|+.+ ++|..|
T Consensus        18 ~nd~~~~~~~~~~W~~~~~~P~~R   41 (49)
T PF13415_consen   18 LNDVWVFDLDTNTWTRIGDLPPPR   41 (49)
T ss_pred             ecCEEEEECCCCEEEECCCCCCCc
Confidence            45689999999999988 555543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	266
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	99.15
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	99.07
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.15
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	98.11
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	98.06
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	98.04
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	98.01
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	98.0
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	98.0
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.0
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.98
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.96
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.93
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.89
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.89
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.83
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	97.78
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.7
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.55
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.41
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.38
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.36
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	97.19
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.01
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	96.95
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.95
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	95.41

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=99.15  E-value=3.4e-11  Score=75.32  Aligned_cols=42  Identities=19%  Similarity=0.391  Sum_probs=37.9

Q ss_pred             CCCCCCCHHHHHHHhccCChhhHHHHHhhhHhHHHHhcCCHHH
Q 042334            3 SSEVKVPADIVYEIFIRLPVKSLMRFRSISKSWRDIIDGSLRF   45 (266)
Q Consensus         3 s~~~~LP~Dll~~IL~rLP~~~l~r~~~VcK~Wr~~i~~s~~F   45 (266)
                      ..+..||+|++.+||++||++++.++++|||+|+.++. ++.|
T Consensus         7 ~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~-~~~l   48 (53)
T 1fs1_A            7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS-DESL   48 (53)
T ss_dssp             --CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT-CGGG
T ss_pred             CCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC-ChHH
Confidence            45678999999999999999999999999999999999 8765

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=99.07  E-value=1.1e-10  Score=98.27  Aligned_cols=50  Identities=14%  Similarity=0.414  Sum_probs=45.9

Q ss_pred             CCCCCCCHHHHHHHhccCChhhHH-HHHhhhHhHHHHhcCCHHHHHHHHhcc
Q 042334            3 SSEVKVPADIVYEIFIRLPVKSLM-RFRSISKSWRDIIDGSLRFANMHMSTR   53 (266)
Q Consensus         3 s~~~~LP~Dll~~IL~rLP~~~l~-r~~~VcK~Wr~~i~~s~~F~~~~~~~~   53 (266)
                      ..+..||+||+.+||++||+++|+ ||++|||+|+.++. ++.|-+.+..+.
T Consensus        49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~-~~~~w~~~~~~~   99 (297)
T 2e31_A           49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVD-GAPLWLLKCQQE   99 (297)
T ss_dssp             CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHT-SHHHHHHHHHHT
T ss_pred             cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhc-ChHHHHHHhhcc
Confidence            356789999999999999999999 99999999999999 999999887655

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.15  E-value=1.1e-06  Score=73.54  Aligned_cols=51  Identities=18%  Similarity=0.296  Sum_probs=44.9

Q ss_pred             CCCCCCCHHHHHHHhccCChhhHHHHHhhhHhHHHHhcCCHHHHHHHHhccc
Q 042334            3 SSEVKVPADIVYEIFIRLPVKSLMRFRSISKSWRDIIDGSLRFANMHMSTRL   54 (266)
Q Consensus         3 s~~~~LP~Dll~~IL~rLP~~~l~r~~~VcK~Wr~~i~~s~~F~~~~~~~~~   54 (266)
                      +.++.||+|++..||+.|++++|+++.+|||+||.++. ++..=+.+..+..
T Consensus         3 ~~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~-D~~LWr~~l~rd~   53 (312)
T 3l2o_B            3 STLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVR-DPILWRYFLLRDL   53 (312)
T ss_dssp             CHHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHT-CHHHHHHHHHSSG
T ss_pred             chhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc-cchHHHHHHhccC
Confidence            34568999999999999999999999999999999999 9987776666554

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=98.11  E-value=0.00015  Score=61.24  Aligned_cols=111  Identities=9%  Similarity=-0.017  Sum_probs=73.2

Q ss_pred             eeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEe--ecCCCcceEEEEEcCCCCcccc-CC
Q 042334          127 NKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLG--REPRNNLEIEVYTLGTHSWRHA-SP  203 (266)
Q Consensus       127 ~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~--~~~~~~~~~~vyss~t~~W~~~-~~  203 (266)
                      ..++++||.|++|..+++++..+.  .      . ....++     -+|+++.  ........+++|+..++.|+.+ .+
T Consensus        90 ~~~~~~d~~~~~W~~~~~~p~~r~--~------~-~~~~~~-----~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~  155 (308)
T 1zgk_A           90 SALDCYNPMTNQWSPCAPMSVPRN--R------I-GVGVID-----GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPM  155 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCB--T------C-EEEEET-----TEEEEECCEETTEECCCEEEEETTTTEEEECCCC
T ss_pred             ceEEEECCCCCeEeECCCCCcCcc--c------c-EEEEEC-----CEEEEEcCCCCCcccccEEEECCCCCeEeECCCC
Confidence            468999999999999998775421  1      1 112222     2566663  2222346799999999999988 55


Q ss_pred             CccccccchhhhccccccceEEcCeEeee-eccCCCCCccEEEEEEcCCCeeccc-CCCCC
Q 042334          204 SSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFGSDHEARIISFDFKNEQLNET-PLPDF  262 (266)
Q Consensus       204 p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~  262 (266)
                      |.... ...         .+.++|.||.+ .... ......+..||+.+++|..+ ++|..
T Consensus       156 p~~r~-~~~---------~~~~~~~iyv~GG~~~-~~~~~~~~~yd~~~~~W~~~~~~p~~  205 (308)
T 1zgk_A          156 LTRRI-GVG---------VAVLNRLLYAVGGFDG-TNRLNSAECYYPERNEWRMITAMNTI  205 (308)
T ss_dssp             SSCCB-SCE---------EEEETTEEEEECCBCS-SCBCCCEEEEETTTTEEEECCCCSSC
T ss_pred             Ccccc-ceE---------EEEECCEEEEEeCCCC-CCcCceEEEEeCCCCeEeeCCCCCCc
Confidence            53322 222         67789999999 3321 12245799999999999988 44543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=98.06  E-value=7e-05  Score=63.40  Aligned_cols=125  Identities=8%  Similarity=-0.020  Sum_probs=81.1

Q ss_pred             cCeEEEeeecc------CCceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeec---CC
Q 042334          113 AYGLLLLQDCW------AGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGRE---PR  183 (266)
Q Consensus       113 ~~Glll~~~~~------~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~---~~  183 (266)
                      .+|.|.+..+.      .....+.++||.|++|..+++.+..+.         ...+..++     -+|+++...   ..
T Consensus        97 ~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~---------~~~~~~~~-----~~iyv~GG~~~~~~  162 (315)
T 4asc_A           97 ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVY---------GHTVLSHM-----DLVYVIGGKGSDRK  162 (315)
T ss_dssp             ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCB---------SCEEEEET-----TEEEEECCBCTTSC
T ss_pred             ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCccc---------ceeEEEEC-----CEEEEEeCCCCCCc
Confidence            56666555431      123579999999999999998775421         11112222     256666322   22


Q ss_pred             CcceEEEEEcCCCCcccc-CCCccccccchhhhccccccceEEcCeEeee-eccCCCCCccEEEEEEcCCCeeccc-CCC
Q 042334          184 NNLEIEVYTLGTHSWRHA-SPSSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFGSDHEARIISFDFKNEQLNET-PLP  260 (266)
Q Consensus       184 ~~~~~~vyss~t~~W~~~-~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~~~~~~~il~fD~~~~~~~~i-~lP  260 (266)
                      ....+++|+..++.|+.+ .+|.... ..         ..+.++|.||.+ .... ......+..||+.+.+|..+ ++|
T Consensus       163 ~~~~~~~yd~~~~~W~~~~~~p~~r~-~~---------~~~~~~~~iyv~GG~~~-~~~~~~~~~yd~~~~~W~~~~~~p  231 (315)
T 4asc_A          163 CLNKMCVYDPKKFEWKELAPMQTARS-LF---------GATVHDGRIIVAAGVTD-TGLTSSAEVYSITDNKWAPFEAFP  231 (315)
T ss_dssp             BCCCEEEEETTTTEEEECCCCSSCCB-SC---------EEEEETTEEEEEEEECS-SSEEEEEEEEETTTTEEEEECCCS
T ss_pred             ccceEEEEeCCCCeEEECCCCCCchh-ce---------EEEEECCEEEEEeccCC-CCccceEEEEECCCCeEEECCCCC
Confidence            456899999999999988 4443221 22         267889999999 4331 12345799999999999988 455


Q ss_pred             CC
Q 042334          261 DF  262 (266)
Q Consensus       261 ~~  262 (266)
                      ..
T Consensus       232 ~~  233 (315)
T 4asc_A          232 QE  233 (315)
T ss_dssp             SC
T ss_pred             Cc
Confidence            43

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=98.04  E-value=6.5e-05  Score=63.11  Aligned_cols=126  Identities=10%  Similarity=0.124  Sum_probs=79.3

Q ss_pred             cCeEEEeeecc---CCceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEee--cCCCcce
Q 042334          113 AYGLLLLQDCW---AGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGR--EPRNNLE  187 (266)
Q Consensus       113 ~~Glll~~~~~---~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~--~~~~~~~  187 (266)
                      .+|.|.+..+.   .....+.++||.|++|..+++++..+.  .+     .  ...++    + +++++..  .......
T Consensus        60 ~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~--~~-----~--~~~~~----~-~iyv~GG~~~~~~~~~  125 (302)
T 2xn4_A           60 MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRS--TL-----G--AAVLN----G-LLYAVGGFDGSTGLSS  125 (302)
T ss_dssp             ETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCB--SC-----E--EEEET----T-EEEEEEEECSSCEEEE
T ss_pred             ECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCcccc--ce-----E--EEEEC----C-EEEEEcCCCCCccCce
Confidence            46666555432   123568999999999999998775421  11     1  11221    2 4555532  2223467


Q ss_pred             EEEEEcCCCCcccc-CCCccccccchhhhccccccceEEcCeEeee-eccC-CCCCccEEEEEEcCCCeeccc-CCCCC
Q 042334          188 IEVYTLGTHSWRHA-SPSSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEF-GSDHEARIISFDFKNEQLNET-PLPDF  262 (266)
Q Consensus       188 ~~vyss~t~~W~~~-~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~-~~~~~~~il~fD~~~~~~~~i-~lP~~  262 (266)
                      +++|+..++.|+.+ .+|... ...         ..+.++|.+|.+ .... .......+..||+.+++|..+ ++|..
T Consensus       126 ~~~~d~~~~~W~~~~~~p~~r-~~~---------~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~  194 (302)
T 2xn4_A          126 VEAYNIKSNEWFHVAPMNTRR-SSV---------GVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTR  194 (302)
T ss_dssp             EEEEETTTTEEEEECCCSSCC-BSC---------EEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSC
T ss_pred             EEEEeCCCCeEeecCCCCCcc-cCc---------eEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccc
Confidence            99999999999988 444321 122         267889999999 3321 111245699999999999988 55543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=98.01  E-value=0.00014  Score=61.22  Aligned_cols=113  Identities=15%  Similarity=0.160  Sum_probs=75.0

Q ss_pred             ceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEee-cCCCcceEEEEEcCCCCcccc-CC
Q 042334          126 RNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGR-EPRNNLEIEVYTLGTHSWRHA-SP  203 (266)
Q Consensus       126 ~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~-~~~~~~~~~vyss~t~~W~~~-~~  203 (266)
                      ...+.++||.|++|..+++++..+.  .+     .  ...++    + +|+++.. .......+++|+..++.|+.. .+
T Consensus        23 ~~~~~~~d~~~~~W~~~~~~p~~r~--~~-----~--~~~~~----~-~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~   88 (306)
T 3ii7_A           23 PQSCRYFNPKDYSWTDIRCPFEKRR--DA-----A--CVFWD----N-VVYILGGSQLFPIKRMDCYNVVKDSWYSKLGP   88 (306)
T ss_dssp             TTSEEEEETTTTEEEECCCCSCCCB--SC-----E--EEEET----T-EEEEECCBSSSBCCEEEEEETTTTEEEEEECC
T ss_pred             CceEEEecCCCCCEecCCCCCcccc--ee-----E--EEEEC----C-EEEEEeCCCCCCcceEEEEeCCCCeEEECCCC
Confidence            4578999999999999998775421  11     1  11221    2 4555532 223456899999999999988 55


Q ss_pred             CccccccchhhhccccccceEEcCeEeee-eccCCCCCccEEEEEEcCCCeeccc-CCCCC
Q 042334          204 SSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFGSDHEARIISFDFKNEQLNET-PLPDF  262 (266)
Q Consensus       204 p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~  262 (266)
                      |.... ...         .+.++|.+|.+ ..+........+..||+.+.+|..+ ++|..
T Consensus        89 p~~r~-~~~---------~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~  139 (306)
T 3ii7_A           89 PTPRD-SLA---------ACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQ  139 (306)
T ss_dssp             SSCCB-SCE---------EEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSC
T ss_pred             Ccccc-cee---------EEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCC
Confidence            53322 222         67889999998 4332223356799999999999988 55543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=98.00  E-value=9.4e-05  Score=62.23  Aligned_cols=125  Identities=14%  Similarity=0.009  Sum_probs=80.5

Q ss_pred             cCeEEEeeecc----CCceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEe--ecCCC--
Q 042334          113 AYGLLLLQDCW----AGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLG--REPRN--  184 (266)
Q Consensus       113 ~~Glll~~~~~----~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~--~~~~~--  184 (266)
                      .+|.|.+..+.    .....+.++||.|++|..+++++..+.  .      . ....++    + +|+++.  .....  
T Consensus       100 ~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~--~------~-~~~~~~----~-~iyv~GG~~~~~~~~  165 (306)
T 3ii7_A          100 AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRC--S------H-GMVEAN----G-LIYVCGGSLGNNVSG  165 (306)
T ss_dssp             ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCB--S------C-EEEEET----T-EEEEECCEESCTTTC
T ss_pred             ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcc--e------e-EEEEEC----C-EEEEECCCCCCCCcc
Confidence            56666555432    123579999999999999988875421  1      1 112221    2 566663  22222  


Q ss_pred             --cceEEEEEcCCCCcccc-CCCccccccchhhhccccccceEEcCeEeee-eccCCCCCccEEEEEEcCCCeeccc-CC
Q 042334          185 --NLEIEVYTLGTHSWRHA-SPSSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFGSDHEARIISFDFKNEQLNET-PL  259 (266)
Q Consensus       185 --~~~~~vyss~t~~W~~~-~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~~~~~~~il~fD~~~~~~~~i-~l  259 (266)
                        ...+++|+..++.|+.+ .+|.... ..         ..+.++|.||.+ .... ......+..||+.+.+|..+ ++
T Consensus       166 ~~~~~~~~yd~~~~~W~~~~~~p~~r~-~~---------~~~~~~~~i~v~GG~~~-~~~~~~~~~yd~~~~~W~~~~~~  234 (306)
T 3ii7_A          166 RVLNSCEVYDPATETWTELCPMIEARK-NH---------GLVFVKDKIFAVGGQNG-LGGLDNVEYYDIKLNEWKMVSPM  234 (306)
T ss_dssp             EECCCEEEEETTTTEEEEECCCSSCCB-SC---------EEEEETTEEEEECCEET-TEEBCCEEEEETTTTEEEECCCC
T ss_pred             cccceEEEeCCCCCeEEECCCccchhh-cc---------eEEEECCEEEEEeCCCC-CCCCceEEEeeCCCCcEEECCCC
Confidence              56899999999999988 4443222 22         267889999999 3321 12235799999999999988 55


Q ss_pred             CCC
Q 042334          260 PDF  262 (266)
Q Consensus       260 P~~  262 (266)
                      |..
T Consensus       235 p~~  237 (306)
T 3ii7_A          235 PWK  237 (306)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=98.00  E-value=0.00013  Score=61.63  Aligned_cols=126  Identities=15%  Similarity=0.044  Sum_probs=81.2

Q ss_pred             cCeEEEeeecc---CCceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeec--CCCcce
Q 042334          113 AYGLLLLQDCW---AGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGRE--PRNNLE  187 (266)
Q Consensus       113 ~~Glll~~~~~---~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~--~~~~~~  187 (266)
                      .+|.|.+..+.   .....+.++||.|.+|..+++++..+.  .      . .+..++     =+|+++...  ......
T Consensus       167 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~--~------~-~~~~~~-----~~iyv~GG~~~~~~~~~  232 (308)
T 1zgk_A          167 LNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRS--G------A-GVCVLH-----NCIYAAGGYDGQDQLNS  232 (308)
T ss_dssp             ETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCB--S------C-EEEEET-----TEEEEECCBCSSSBCCC
T ss_pred             ECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccc--c------c-eEEEEC-----CEEEEEeCCCCCCccce
Confidence            46666555432   114578999999999999987765421  1      1 122222     246665322  223568


Q ss_pred             EEEEEcCCCCcccc-CCCccccccchhhhccccccceEEcCeEeee-eccCCCCCccEEEEEEcCCCeeccc-CCCCCC
Q 042334          188 IEVYTLGTHSWRHA-SPSSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFGSDHEARIISFDFKNEQLNET-PLPDFR  263 (266)
Q Consensus       188 ~~vyss~t~~W~~~-~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~~  263 (266)
                      +++|+..++.|+.+ .+|.... ..         ..+.++|.||.+ ..+ .......+..||+++.+|+.+ ++|..+
T Consensus       233 v~~yd~~~~~W~~~~~~p~~r~-~~---------~~~~~~~~i~v~GG~~-~~~~~~~v~~yd~~~~~W~~~~~~p~~r  300 (308)
T 1zgk_A          233 VERYDVETETWTFVAPMKHRRS-AL---------GITVHQGRIYVLGGYD-GHTFLDSVECYDPDTDTWSEVTRMTSGR  300 (308)
T ss_dssp             EEEEETTTTEEEECCCCSSCCB-SC---------EEEEETTEEEEECCBC-SSCBCCEEEEEETTTTEEEEEEECSSCC
T ss_pred             EEEEeCCCCcEEECCCCCCCcc-ce---------EEEEECCEEEEEcCcC-CCcccceEEEEcCCCCEEeecCCCCCCc
Confidence            99999999999988 4443221 22         267789999999 332 223356899999999999988 666543

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.00  E-value=0.00011  Score=61.49  Aligned_cols=125  Identities=10%  Similarity=0.077  Sum_probs=79.9

Q ss_pred             cCeEEEeeecc---CCceeEEEEcccccc---eeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeec--CCC
Q 042334          113 AYGLLLLQDCW---AGRNKLFLCNPLRGE---VLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGRE--PRN  184 (266)
Q Consensus       113 ~~Glll~~~~~---~~~~~~~V~NP~T~~---~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~--~~~  184 (266)
                      .+|.|.+..+.   .....++++||.|++   |..+++.+..+.  .      . ....++     -+|+++...  ...
T Consensus        61 ~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~--~------~-~~~~~~-----~~lyv~GG~~~~~~  126 (301)
T 2vpj_A           61 LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRG--L------A-GATTLG-----DMIYVSGGFDGSRR  126 (301)
T ss_dssp             ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCB--S------C-EEEEET-----TEEEEECCBCSSCB
T ss_pred             ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCcc--c------e-eEEEEC-----CEEEEEcccCCCcc
Confidence            45656555432   123579999999999   999988775421  1      1 112221     256666322  223


Q ss_pred             cceEEEEEcCCCCcccc-CCCccccccchhhhccccccceEEcCeEeee-eccCCCCCccEEEEEEcCCCeeccc-CCCC
Q 042334          185 NLEIEVYTLGTHSWRHA-SPSSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFGSDHEARIISFDFKNEQLNET-PLPD  261 (266)
Q Consensus       185 ~~~~~vyss~t~~W~~~-~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~~~~~~~il~fD~~~~~~~~i-~lP~  261 (266)
                      ...+++|+..++.|+.+ ..|... ...         ..+.++|.+|.+ ..+ .......+..||+.+.+|..+ ++|.
T Consensus       127 ~~~~~~~d~~~~~W~~~~~~p~~r-~~~---------~~~~~~~~iyv~GG~~-~~~~~~~~~~~d~~~~~W~~~~~~p~  195 (301)
T 2vpj_A          127 HTSMERYDPNIDQWSMLGDMQTAR-EGA---------GLVVASGVIYCLGGYD-GLNILNSVEKYDPHTGHWTNVTPMAT  195 (301)
T ss_dssp             CCEEEEEETTTTEEEEEEECSSCC-BSC---------EEEEETTEEEEECCBC-SSCBCCCEEEEETTTTEEEEECCCSS
T ss_pred             cceEEEEcCCCCeEEECCCCCCCc-ccc---------eEEEECCEEEEECCCC-CCcccceEEEEeCCCCcEEeCCCCCc
Confidence            56899999999999988 444322 122         267789999999 322 122346799999999999988 4554


Q ss_pred             C
Q 042334          262 F  262 (266)
Q Consensus       262 ~  262 (266)
                      .
T Consensus       196 ~  196 (301)
T 2vpj_A          196 K  196 (301)
T ss_dssp             C
T ss_pred             c
Confidence            3

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.98  E-value=8.4e-05  Score=62.91  Aligned_cols=111  Identities=14%  Similarity=0.082  Sum_probs=74.5

Q ss_pred             eEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEee-c----CCCcceEEEEEcCCCCcccc-
Q 042334          128 KLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGR-E----PRNNLEIEVYTLGTHSWRHA-  201 (266)
Q Consensus       128 ~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~-~----~~~~~~~~vyss~t~~W~~~-  201 (266)
                      .++++||.|++|..+|+.+..+.  .+     .  ...+    + -+|+++.. +    ......+++|+..++.|+.+ 
T Consensus        68 ~~~~~d~~~~~W~~~~~~p~~r~--~~-----~--~~~~----~-~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~  133 (315)
T 4asc_A           68 YFLQFDHLDSEWLGMPPLPSPRC--LF-----G--LGEA----L-NSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESD  133 (315)
T ss_dssp             EEEEEETTTTEEEECCCBSSCEE--SC-----E--EEEE----T-TEEEEECCEESSTTCCBCCCEEEEETTTTEEEECC
T ss_pred             ceEEecCCCCeEEECCCCCcchh--ce-----e--EEEE----C-CEEEEEeCCcCCCCCcccceEEEECCCCCcEeECC
Confidence            48999999999999998775421  11     1  1112    1 25666632 1    23456899999999999988 


Q ss_pred             CCCccccccchhhhccccccceEEcCeEeee-eccCCCCCccEEEEEEcCCCeeccc-CCCCC
Q 042334          202 SPSSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFGSDHEARIISFDFKNEQLNET-PLPDF  262 (266)
Q Consensus       202 ~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~  262 (266)
                      .+|.... ...         .+.++|.+|.+ ...........+..||+.+.+|+.+ ++|..
T Consensus       134 ~~p~~r~-~~~---------~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~  186 (315)
T 4asc_A          134 PLPYVVY-GHT---------VLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTA  186 (315)
T ss_dssp             CCSSCCB-SCE---------EEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSC
T ss_pred             CCCCccc-cee---------EEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCc
Confidence            5554322 222         67899999999 4422333456799999999999988 45543

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.96  E-value=0.00011  Score=61.61  Aligned_cols=125  Identities=10%  Similarity=0.054  Sum_probs=80.5

Q ss_pred             cCeEEEeeecc---CCceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeec--CCCcce
Q 042334          113 AYGLLLLQDCW---AGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGRE--PRNNLE  187 (266)
Q Consensus       113 ~~Glll~~~~~---~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~--~~~~~~  187 (266)
                      .+|.|.+..+.   .....+.++||.|++|..+++.+..+.         ...+..++     -+|+++...  ......
T Consensus       111 ~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~---------~~~~~~~~-----~~iyv~GG~~~~~~~~~  176 (301)
T 2vpj_A          111 LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTARE---------GAGLVVAS-----GVIYCLGGYDGLNILNS  176 (301)
T ss_dssp             ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCB---------SCEEEEET-----TEEEEECCBCSSCBCCC
T ss_pred             ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcc---------cceEEEEC-----CEEEEECCCCCCcccce
Confidence            56666665532   123479999999999999987764321         11122222     246665322  223568


Q ss_pred             EEEEEcCCCCcccc-CCCccccccchhhhccccccceEEcCeEeee-eccCCCCCccEEEEEEcCCCeeccc-CCCCC
Q 042334          188 IEVYTLGTHSWRHA-SPSSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFGSDHEARIISFDFKNEQLNET-PLPDF  262 (266)
Q Consensus       188 ~~vyss~t~~W~~~-~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~  262 (266)
                      +++|+..++.|+.+ .+|.... ..         ..+.++|.||.+ ..+ .......+..||+.+.+|..+ ++|..
T Consensus       177 ~~~~d~~~~~W~~~~~~p~~r~-~~---------~~~~~~~~i~v~GG~~-~~~~~~~v~~yd~~~~~W~~~~~~p~~  243 (301)
T 2vpj_A          177 VEKYDPHTGHWTNVTPMATKRS-GA---------GVALLNDHIYVVGGFD-GTAHLSSVEAYNIRTDSWTTVTSMTTP  243 (301)
T ss_dssp             EEEEETTTTEEEEECCCSSCCB-SC---------EEEEETTEEEEECCBC-SSSBCCCEEEEETTTTEEEEECCCSSC
T ss_pred             EEEEeCCCCcEEeCCCCCcccc-cc---------eEEEECCEEEEEeCCC-CCcccceEEEEeCCCCcEEECCCCCCc
Confidence            99999999999988 4443222 22         267889999999 332 122245799999999999988 45543

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.93  E-value=0.00019  Score=60.81  Aligned_cols=111  Identities=13%  Similarity=0.130  Sum_probs=72.7

Q ss_pred             eEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEe-ec---CCCcceEEEEEcCCCCcccc-C
Q 042334          128 KLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLG-RE---PRNNLEIEVYTLGTHSWRHA-S  202 (266)
Q Consensus       128 ~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-~~---~~~~~~~~vyss~t~~W~~~-~  202 (266)
                      .++++||.|++|..+|+++..+.  .+     .  ...++    + +|+++. ..   ......+++|+..++.|+.+ .
T Consensus        79 ~~~~~d~~~~~W~~~~~~p~~r~--~~-----~--~~~~~----~-~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~  144 (318)
T 2woz_A           79 YFFQLDNVSSEWVGLPPLPSARC--LF-----G--LGEVD----D-KIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKN  144 (318)
T ss_dssp             EEEEEETTTTEEEECSCBSSCBC--SC-----E--EEEET----T-EEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECC
T ss_pred             cEEEEeCCCCcEEECCCCCcccc--cc-----c--eEEEC----C-EEEEEcCccCCCCcccceEEEEeCCCCCEeECCC
Confidence            38899999999999988775421  11     1  11121    2 455552 22   22346799999999999988 5


Q ss_pred             CCccccccchhhhccccccceEEcCeEeee-eccCCCCCccEEEEEEcCCCeeccc-CCCCC
Q 042334          203 PSSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFGSDHEARIISFDFKNEQLNET-PLPDF  262 (266)
Q Consensus       203 ~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~  262 (266)
                      +|.... ...         .+.++|.||.+ ...........+..||+.+.+|+.+ ++|..
T Consensus       145 ~p~~r~-~~~---------~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~  196 (318)
T 2woz_A          145 LPIKVY-GHN---------VISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTP  196 (318)
T ss_dssp             CSSCEE-SCE---------EEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSC
T ss_pred             CCCccc-ccE---------EEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCC
Confidence            554322 222         67799999999 4322222345699999999999988 45543

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.89  E-value=0.00014  Score=61.00  Aligned_cols=126  Identities=17%  Similarity=0.116  Sum_probs=80.0

Q ss_pred             cCeEEEeeecc-C----CceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeec--CCCc
Q 042334          113 AYGLLLLQDCW-A----GRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGRE--PRNN  185 (266)
Q Consensus       113 ~~Glll~~~~~-~----~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~--~~~~  185 (266)
                      .+|.|.+..+. .    ....+.++||.|.+|..+++++..+.         ......++     =+|+.+...  ....
T Consensus       154 ~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~---------~~~~~~~~-----~~iyv~GG~~~~~~~  219 (302)
T 2xn4_A          154 VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRS---------GAGVGVLN-----NLLYAVGGHDGPLVR  219 (302)
T ss_dssp             ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCB---------SCEEEEET-----TEEEEECCBSSSSBC
T ss_pred             ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccc---------cccEEEEC-----CEEEEECCCCCCccc
Confidence            56666555432 1    13568999999999999987764421         11122222     256666322  2234


Q ss_pred             ceEEEEEcCCCCcccc-CCCccccccchhhhccccccceEEcCeEeee-eccCCCCCccEEEEEEcCCCeecccC--CCC
Q 042334          186 LEIEVYTLGTHSWRHA-SPSSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFGSDHEARIISFDFKNEQLNETP--LPD  261 (266)
Q Consensus       186 ~~~~vyss~t~~W~~~-~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~~~~~~~il~fD~~~~~~~~i~--lP~  261 (266)
                      ..+++|+..++.|+.+ .+|... ...         ..+.++|.||.+ ..+ .......+..||+++.+|+.++  +|.
T Consensus       220 ~~~~~yd~~~~~W~~~~~~~~~r-~~~---------~~~~~~~~i~v~GG~~-~~~~~~~v~~yd~~~~~W~~~~~~~~~  288 (302)
T 2xn4_A          220 KSVEVYDPTTNAWRQVADMNMCR-RNA---------GVCAVNGLLYVVGGDD-GSCNLASVEYYNPTTDKWTVVSSCMST  288 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCC-BSC---------EEEEETTEEEEECCBC-SSSBCCCEEEEETTTTEEEECSSCCSS
T ss_pred             ceEEEEeCCCCCEeeCCCCCCcc-ccC---------eEEEECCEEEEECCcC-CCcccccEEEEcCCCCeEEECCcccCc
Confidence            5799999999999988 444321 122         267889999998 332 2223457999999999999884  554


Q ss_pred             CC
Q 042334          262 FR  263 (266)
Q Consensus       262 ~~  263 (266)
                      .+
T Consensus       289 ~r  290 (302)
T 2xn4_A          289 GR  290 (302)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.89  E-value=0.00014  Score=61.52  Aligned_cols=121  Identities=17%  Similarity=0.172  Sum_probs=76.9

Q ss_pred             cCeEEEeeecc----CCceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEe--ecCCCcc
Q 042334          113 AYGLLLLQDCW----AGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLG--REPRNNL  186 (266)
Q Consensus       113 ~~Glll~~~~~----~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~--~~~~~~~  186 (266)
                      .+|.|.+..+.    .....+.++||.|.+|..+++.+..+.  .      . .+..++    + +|+++.  .......
T Consensus       157 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~--~------~-~~~~~~----~-~iyv~GG~~~~~~~~  222 (318)
T 2woz_A          157 HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRS--M------F-GVAIHK----G-KIVIAGGVTEDGLSA  222 (318)
T ss_dssp             ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCB--S------C-EEEEET----T-EEEEEEEEETTEEEE
T ss_pred             ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcc--c------c-eEEEEC----C-EEEEEcCcCCCCccc
Confidence            56666554432    123569999999999999987765421  1      1 112222    2 555553  2222346


Q ss_pred             eEEEEEcCCCCcccc-CCCccccccchhhhccccccceEEcCeEeee-eccCC--------CCCccEEEEEEcCCCeecc
Q 042334          187 EIEVYTLGTHSWRHA-SPSSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFG--------SDHEARIISFDFKNEQLNE  256 (266)
Q Consensus       187 ~~~vyss~t~~W~~~-~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~--------~~~~~~il~fD~~~~~~~~  256 (266)
                      .+++|+..++.|+.+ ..|.... ..         ..+.++|.||.+ .....        ......+..||+++.+|+.
T Consensus       223 ~~~~yd~~~~~W~~~~~~p~~r~-~~---------~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~  292 (318)
T 2woz_A          223 SVEAFDLKTNKWEVMTEFPQERS-SI---------SLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAG  292 (318)
T ss_dssp             EEEEEETTTCCEEECCCCSSCCB-SC---------EEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEE
T ss_pred             eEEEEECCCCeEEECCCCCCccc-ce---------EEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehh
Confidence            789999999999998 5553221 22         267889999988 33210        1224679999999999998


Q ss_pred             c
Q 042334          257 T  257 (266)
Q Consensus       257 i  257 (266)
                      +
T Consensus       293 ~  293 (318)
T 2woz_A          293 M  293 (318)
T ss_dssp             E
T ss_pred             h
Confidence            8

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.83  E-value=1.5e-05  Score=70.68  Aligned_cols=39  Identities=23%  Similarity=0.497  Sum_probs=35.8

Q ss_pred             CCCCHHHHHHHhccCChhhHHHHHhhhHhHHHHhcCC-HHH
Q 042334            6 VKVPADIVYEIFIRLPVKSLMRFRSISKSWRDIIDGS-LRF   45 (266)
Q Consensus         6 ~~LP~Dll~~IL~rLP~~~l~r~~~VcK~Wr~~i~~s-~~F   45 (266)
                      ..||+|++.+||++||+++|.+++.|||+|+.++. + +..
T Consensus        16 ~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~-~~~~~   55 (464)
T 3v7d_B           16 TSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIR-KSTSL   55 (464)
T ss_dssp             HHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHT-TCHHH
T ss_pred             HHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHc-CCHHH
Confidence            35999999999999999999999999999999999 7 543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=97.78  E-value=1.2e-05  Score=68.73  Aligned_cols=41  Identities=20%  Similarity=0.384  Sum_probs=37.6

Q ss_pred             CCCCCCCHHHHHHHhccCChhhHHHHHhhhHhHHHHhcCCHH
Q 042334            3 SSEVKVPADIVYEIFIRLPVKSLMRFRSISKSWRDIIDGSLR   44 (266)
Q Consensus         3 s~~~~LP~Dll~~IL~rLP~~~l~r~~~VcK~Wr~~i~~s~~   44 (266)
                      ..+..||+|++.+||.+|+.+++.+++.|||+|+.++. ++.
T Consensus         7 ~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~-~~~   47 (336)
T 2ast_B            7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS-DES   47 (336)
T ss_dssp             CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHT-CST
T ss_pred             CChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc-Cch
Confidence            45788999999999999999999999999999999997 664

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.70  E-value=3.2e-05  Score=68.37  Aligned_cols=45  Identities=13%  Similarity=0.203  Sum_probs=39.7

Q ss_pred             CCCCCCHHHHHHHhccCChhhHHHHHhhhHhHHHHhcCCHHHHHHH
Q 042334            4 SEVKVPADIVYEIFIRLPVKSLMRFRSISKSWRDIIDGSLRFANMH   49 (266)
Q Consensus         4 ~~~~LP~Dll~~IL~rLP~~~l~r~~~VcK~Wr~~i~~s~~F~~~~   49 (266)
                      ....||+|++.+||++|++++|.+++.|||+|+.++. ++.+-+..
T Consensus        18 ~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~-~~~~w~~~   62 (445)
T 2ovr_B           18 FISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAE-DNLLWREK   62 (445)
T ss_dssp             TTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHT-CSHHHHHH
T ss_pred             hhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcC-chhHhhhh
Confidence            3567999999999999999999999999999999999 77665543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.55  E-value=4.1e-05  Score=67.60  Aligned_cols=40  Identities=25%  Similarity=0.315  Sum_probs=35.8

Q ss_pred             CCCCHH----HHHHHhccCChhhHHHHHhhhHhHHHHhcCCHHHH
Q 042334            6 VKVPAD----IVYEIFIRLPVKSLMRFRSISKSWRDIIDGSLRFA   46 (266)
Q Consensus         6 ~~LP~D----ll~~IL~rLP~~~l~r~~~VcK~Wr~~i~~s~~F~   46 (266)
                      ..||+|    |+.+||++|++++|.++++|||+|+.++. ++.+=
T Consensus        12 ~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~-~~~~w   55 (435)
T 1p22_A           12 TALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTS-DGMLW   55 (435)
T ss_dssp             HHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHH-HTTHH
T ss_pred             HHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc-ChHHH
Confidence            358999    99999999999999999999999999998 65543

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.41  E-value=0.00061  Score=58.49  Aligned_cols=108  Identities=13%  Similarity=0.040  Sum_probs=66.5

Q ss_pred             eeEEEEcccccceeccCCCC-CCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeecC-----------------------
Q 042334          127 NKLFLCNPLRGEVLELPKPL-QDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGREP-----------------------  182 (266)
Q Consensus       127 ~~~~V~NP~T~~~~~lP~~~-~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~-----------------------  182 (266)
                      ..+.++||.|.+|..+++++ ..+   .      ...+..++     =||+++....                       
T Consensus        86 ~~v~~yd~~~~~W~~~~~~~p~~r---~------~~~~~~~~-----~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~  151 (357)
T 2uvk_A           86 NDVHKYNPKTNSWVKLMSHAPMGM---A------GHVTFVHN-----GKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDK  151 (357)
T ss_dssp             CCEEEEETTTTEEEECSCCCSSCC---S------SEEEEEET-----TEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ccEEEEeCCCCcEEECCCCCCccc---c------cceEEEEC-----CEEEEEeCcCCCcCcccccchhhcCCcccchhh
Confidence            46899999999999998876 221   1      11112222     2555553221                       


Q ss_pred             -------------CCcceEEEEEcCCCCcccc-CCCccccccchhhhccccccceEEcCeEeee-eccCCCCCccEEEEE
Q 042334          183 -------------RNNLEIEVYTLGTHSWRHA-SPSSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFGSDHEARIISF  247 (266)
Q Consensus       183 -------------~~~~~~~vyss~t~~W~~~-~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~~~~~~~il~f  247 (266)
                                   .....+++|+..++.|+.+ .+|........         .+.++|.||.+ ...........+..|
T Consensus       152 ~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~---------~~~~~~~iyv~GG~~~~~~~~~~v~~~  222 (357)
T 2uvk_A          152 INAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAA---------VVNKGDKTWLINGEAKPGLRTDAVFEL  222 (357)
T ss_dssp             HHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCE---------EEEETTEEEEECCEEETTEECCCEEEE
T ss_pred             hhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCccccc---------EEEECCEEEEEeeecCCCcccCceEEE
Confidence                         1236899999999999988 55533222222         67889999998 322111123457778


Q ss_pred             Ec--CCCeeccc
Q 042334          248 DF--KNEQLNET  257 (266)
Q Consensus       248 D~--~~~~~~~i  257 (266)
                      |+  .+.+|+.+
T Consensus       223 d~d~~~~~W~~~  234 (357)
T 2uvk_A          223 DFTGNNLKWNKL  234 (357)
T ss_dssp             ECC---CEEEEC
T ss_pred             EecCCCCcEEec
Confidence            76  89999987

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.38  E-value=8.6e-05  Score=68.26  Aligned_cols=35  Identities=20%  Similarity=0.406  Sum_probs=29.6

Q ss_pred             CCCCCCHHHHHHHhccCC-hhhHHHHHhhhHhHHHH
Q 042334            4 SEVKVPADIVYEIFIRLP-VKSLMRFRSISKSWRDI   38 (266)
Q Consensus         4 ~~~~LP~Dll~~IL~rLP-~~~l~r~~~VcK~Wr~~   38 (266)
                      .++.||+|++.+||.+|| .+++.+++.|||+|+.+
T Consensus         5 ~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            5 IALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             -----CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             chhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            466799999999999999 99999999999999988

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.36  E-value=0.0015  Score=56.03  Aligned_cols=125  Identities=12%  Similarity=0.063  Sum_probs=77.4

Q ss_pred             cCeEEEeeeccCCceeEEEEccc--ccceeccCCCC-CCCCCCCcCCCCcceeeeeecCCCCCeEEEEEe-e-c--C---
Q 042334          113 AYGLLLLQDCWAGRNKLFLCNPL--RGEVLELPKPL-QDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLG-R-E--P---  182 (266)
Q Consensus       113 ~~Glll~~~~~~~~~~~~V~NP~--T~~~~~lP~~~-~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-~-~--~---  182 (266)
                      .+|.|.+..+. ....++++||.  +++|..+++++ ..+.  .     ..  ...++    + +|+++. . .  .   
T Consensus        18 ~~~~iyv~GG~-~~~~~~~~d~~~~~~~W~~~~~~p~~~R~--~-----~~--~~~~~----~-~lyv~GG~~~~~~~~~   82 (357)
T 2uvk_A           18 DNDTVYIGLGS-AGTAWYKLDTQAKDKKWTALAAFPGGPRD--Q-----AT--SAFID----G-NLYVFGGIGKNSEGLT   82 (357)
T ss_dssp             ETTEEEEECGG-GTTCEEEEETTSSSCCEEECCCCTTCCCB--S-----CE--EEEET----T-EEEEECCEEECTTSCE
T ss_pred             ECCEEEEEeCc-CCCeEEEEccccCCCCeeECCCCCCCcCc--c-----ce--EEEEC----C-EEEEEcCCCCCCCccc
Confidence            46666655532 24578999998  49999999877 3321  1     11  12222    2 466652 2 1  1   


Q ss_pred             CCcceEEEEEcCCCCcccc-CCCccccccchhhhccccccceEEcCeEeee-eccCCC----------------------
Q 042334          183 RNNLEIEVYTLGTHSWRHA-SPSSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFGS----------------------  238 (266)
Q Consensus       183 ~~~~~~~vyss~t~~W~~~-~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~~----------------------  238 (266)
                      .....+++|+..++.|+.+ .++........         .+.++|.||.+ ..+...                      
T Consensus        83 ~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~---------~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (357)
T 2uvk_A           83 QVFNDVHKYNPKTNSWVKLMSHAPMGMAGHV---------TFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKIN  153 (357)
T ss_dssp             EECCCEEEEETTTTEEEECSCCCSSCCSSEE---------EEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             eeeccEEEEeCCCCcEEECCCCCCcccccce---------EEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhh
Confidence            1245799999999999998 44412222222         56799999998 322100                      


Q ss_pred             -----------CCccEEEEEEcCCCeeccc-CCCC
Q 042334          239 -----------DHEARIISFDFKNEQLNET-PLPD  261 (266)
Q Consensus       239 -----------~~~~~il~fD~~~~~~~~i-~lP~  261 (266)
                                 .....+..||+.+.+|+.+ ++|.
T Consensus       154 ~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~  188 (357)
T 2uvk_A          154 AHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPW  188 (357)
T ss_dssp             HHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSS
T ss_pred             hhhccccccccCCcccEEEEeCCCCcEEECCCCCC
Confidence                       0125899999999999988 5554

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=97.19  E-value=0.0022  Score=60.61  Aligned_cols=128  Identities=16%  Similarity=0.134  Sum_probs=78.7

Q ss_pred             CeEEEeeeccCCceeEEEEcccccceeccCCC---CCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeec--C--CCcc
Q 042334          114 YGLLLLQDCWAGRNKLFLCNPLRGEVLELPKP---LQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGRE--P--RNNL  186 (266)
Q Consensus       114 ~Glll~~~~~~~~~~~~V~NP~T~~~~~lP~~---~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~--~--~~~~  186 (266)
                      +|.|.+..+......+.++||.|.+|..+++.   +..+   .      ...+..++..  .-+|+++...  .  ....
T Consensus       500 ~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r---~------~~~a~v~~~~--~~~iyv~GG~~~~~~~~~~  568 (695)
T 2zwa_A          500 DGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNS---L------VSAGLEFDPV--SKQGIILGGGFMDQTTVSD  568 (695)
T ss_dssp             TSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSC---C------BSCEEEEETT--TTEEEEECCBCTTSSCBCC
T ss_pred             CCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcc---c------ceeEEEEeCC--CCEEEEECCcCCCCCeeeC
Confidence            66665555431222799999999999999873   3221   1      1122444432  2356666322  2  2346


Q ss_pred             eEEEEEcCCCC------cccc-CCCccccccchhhhccccccceEEc-CeEeee-eccCCC--CCccEEEEEEcCCCeec
Q 042334          187 EIEVYTLGTHS------WRHA-SPSSIRLSNNKLQLQCLSEFGLSAY-GDMHWK-NWEFGS--DHEARIISFDFKNEQLN  255 (266)
Q Consensus       187 ~~~vyss~t~~------W~~~-~~p~~~~~~~~~~~~~~~~~~v~~~-G~~yw~-~~~~~~--~~~~~il~fD~~~~~~~  255 (266)
                      .+++|+..++.      |+.+ ..|.......         ..+.++ |.||.+ ......  .....|..||+.+.+|.
T Consensus       569 ~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~---------~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~  639 (695)
T 2zwa_A          569 KAIIFKYDAENATEPITVIKKLQHPLFQRYGS---------QIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT  639 (695)
T ss_dssp             EEEEEEECTTCSSCCEEEEEEEECGGGCCBSC---------EEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred             cEEEEEccCCccccceEEEEcCCCCCCCcccc---------eEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence            89999999999      5555 3332222222         257788 999999 332111  23567999999999999


Q ss_pred             ccCCCC
Q 042334          256 ETPLPD  261 (266)
Q Consensus       256 ~i~lP~  261 (266)
                      .+++|.
T Consensus       640 ~~~~p~  645 (695)
T 2zwa_A          640 SIPISR  645 (695)
T ss_dssp             ECCCCH
T ss_pred             Eeeccc
Confidence            888774

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.01  E-value=0.003  Score=59.03  Aligned_cols=121  Identities=16%  Similarity=0.139  Sum_probs=75.3

Q ss_pred             CeEEEeeeccC---------CceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeecCCC
Q 042334          114 YGLLLLQDCWA---------GRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGREPRN  184 (266)
Q Consensus       114 ~Glll~~~~~~---------~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~  184 (266)
                      +|.|++..+..         ....+.++||.|++|..++.++..+..        ...+..+..   +-+|+++....  
T Consensus       197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~--------~~~~~~~~~---~g~lyv~GG~~--  263 (656)
T 1k3i_A          197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDM--------FCPGISMDG---NGQIVVTGGND--  263 (656)
T ss_dssp             TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCC--------SSCEEEECT---TSCEEEECSSS--
T ss_pred             CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCC--------ccccccCCC---CCCEEEeCCCC--
Confidence            77777664321         123688999999999999876543221        111122111   22455653322  


Q ss_pred             cceEEEEEcCCCCcccc-CCCccccccchhhhccccccceEE-cCeEeee-eccCCCCCccEEEEEEcCCCeeccc
Q 042334          185 NLEIEVYTLGTHSWRHA-SPSSIRLSNNKLQLQCLSEFGLSA-YGDMHWK-NWEFGSDHEARIISFDFKNEQLNET  257 (266)
Q Consensus       185 ~~~~~vyss~t~~W~~~-~~p~~~~~~~~~~~~~~~~~~v~~-~G~~yw~-~~~~~~~~~~~il~fD~~~~~~~~i  257 (266)
                      ...+++|+..++.|..+ .+|.... ...         .+.+ +|++|.+ ...........+..||+.+.+|..+
T Consensus       264 ~~~v~~yd~~t~~W~~~~~~~~~R~-~~s---------~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~  329 (656)
T 1k3i_A          264 AKKTSLYDSSSDSWIPGPDMQVARG-YQS---------SATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSL  329 (656)
T ss_dssp             TTCEEEEEGGGTEEEECCCCSSCCS-SCE---------EEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEE
T ss_pred             CCceEEecCcCCceeECCCCCcccc-ccc---------eEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeC
Confidence            22799999999999988 4443222 221         4666 9999999 4222222345689999999999986

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=96.95  E-value=0.00035  Score=64.20  Aligned_cols=34  Identities=15%  Similarity=0.242  Sum_probs=31.9

Q ss_pred             CCCCHHHHHHHhccC-ChhhHHHHHhhhHhHHHHh
Q 042334            6 VKVPADIVYEIFIRL-PVKSLMRFRSISKSWRDII   39 (266)
Q Consensus         6 ~~LP~Dll~~IL~rL-P~~~l~r~~~VcK~Wr~~i   39 (266)
                      ..||+|++.+||.+| |.+++.+++.|||+|+.+.
T Consensus        14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~   48 (592)
T 3ogk_B           14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKID   48 (592)
T ss_dssp             CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHH
T ss_pred             CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhh
Confidence            469999999999999 8999999999999999884

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.95  E-value=0.0049  Score=58.18  Aligned_cols=121  Identities=11%  Similarity=0.106  Sum_probs=73.0

Q ss_pred             CeEEEeeecc--CCceeEEEEcccccceeccC-CCC---CCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeec--CC-C
Q 042334          114 YGLLLLQDCW--AGRNKLFLCNPLRGEVLELP-KPL---QDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGRE--PR-N  184 (266)
Q Consensus       114 ~Glll~~~~~--~~~~~~~V~NP~T~~~~~lP-~~~---~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~--~~-~  184 (266)
                      +|.|.+..+.  .....++++||.|++|..++ +.+   ...++..+     .  ...++.   +-+|+++...  .. .
T Consensus       397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~h-----s--~~~~~~---~~~lyv~GG~~~~~~~  466 (695)
T 2zwa_A          397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCH-----T--FTTISR---NNQLLLIGGRKAPHQG  466 (695)
T ss_dssp             SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSC-----E--EEEETT---TTEEEEECCBSSTTCB
T ss_pred             CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccce-----E--EEEEcc---CCEEEEEcCCCCCCCc
Confidence            4445444432  12356899999999999998 532   11111111     1  122210   1246666322  21 3


Q ss_pred             cceEEEEEcCCCCcccc-CCCccccccchhhhccccccceEE-cCeEeee-eccCCCCCccEEEEEEcCCCeecccC
Q 042334          185 NLEIEVYTLGTHSWRHA-SPSSIRLSNNKLQLQCLSEFGLSA-YGDMHWK-NWEFGSDHEARIISFDFKNEQLNETP  258 (266)
Q Consensus       185 ~~~~~vyss~t~~W~~~-~~p~~~~~~~~~~~~~~~~~~v~~-~G~~yw~-~~~~~~~~~~~il~fD~~~~~~~~i~  258 (266)
                      ...+++|+..++.|+.+ .+|.... ...         .+.+ +|.||.+ .....   . .+..||+.+.+|..+.
T Consensus       467 ~~dv~~yd~~t~~W~~~~~~p~~R~-~h~---------~~~~~~~~iyv~GG~~~~---~-~v~~yd~~t~~W~~~~  529 (695)
T 2zwa_A          467 LSDNWIFDMKTREWSMIKSLSHTRF-RHS---------ACSLPDGNVLILGGVTEG---P-AMLLYNVTEEIFKDVT  529 (695)
T ss_dssp             CCCCEEEETTTTEEEECCCCSBCCB-SCE---------EEECTTSCEEEECCBCSS---C-SEEEEETTTTEEEECC
T ss_pred             cccEEEEeCCCCcEEECCCCCCCcc-cce---------EEEEcCCEEEEECCCCCC---C-CEEEEECCCCceEEcc
Confidence            46799999999999998 5553222 221         4554 9999999 43311   1 7999999999999885

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=95.41  E-value=0.039  Score=51.47  Aligned_cols=109  Identities=6%  Similarity=-0.074  Sum_probs=64.5

Q ss_pred             EEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeec-C-------CCcceEEEEEcCCCCccc
Q 042334          129 LFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGRE-P-------RNNLEIEVYTLGTHSWRH  200 (266)
Q Consensus       129 ~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~-~-------~~~~~~~vyss~t~~W~~  200 (266)
                      +..++|.+++|..++++|..          ..  +..+-+.  +=||+++... .       .....+.+|+..++.|+.
T Consensus       168 ~~~~dp~~~~W~~~~~~P~~----------~~--~~av~~~--~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~  233 (656)
T 1k3i_A          168 YTAPQPGLGRWGPTIDLPIV----------PA--AAAIEPT--SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSD  233 (656)
T ss_dssp             CCCCCTTSCEEEEEEECSSC----------CS--EEEEETT--TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCC
T ss_pred             cccCCCCCCeeeeeccCCCC----------ce--eEEEEec--CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEe
Confidence            34458888999887776542          11  1222221  2355555322 1       122468999999999998


Q ss_pred             c-CCCccccccchhhhccccccceEEcCeEeee-eccCCCCCccEEEEEEcCCCeeccc-CCCCCC
Q 042334          201 A-SPSSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFGSDHEARIISFDFKNEQLNET-PLPDFR  263 (266)
Q Consensus       201 ~-~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~~  263 (266)
                      . .+|......+.       ...+..+|.||.+ ...     ...+..||+.+.+|..+ ++|..|
T Consensus       234 ~~~~~~~~~~~~~-------~~~~~~~g~lyv~GG~~-----~~~v~~yd~~t~~W~~~~~~~~~R  287 (656)
T 1k3i_A          234 RTVTVTKHDMFCP-------GISMDGNGQIVVTGGND-----AKKTSLYDSSSDSWIPGPDMQVAR  287 (656)
T ss_dssp             CEEEECSCCCSSC-------EEEECTTSCEEEECSSS-----TTCEEEEEGGGTEEEECCCCSSCC
T ss_pred             CcccCCCCCCccc-------cccCCCCCCEEEeCCCC-----CCceEEecCcCCceeECCCCCccc
Confidence            7 33332222221       0123468999998 433     23699999999999987 555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	266
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	2e-05

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (90), Expect = 2e-05
 Identities = 7/32 (21%), Positives = 15/32 (46%)

Query: 9  PADIVYEIFIRLPVKSLMRFRSISKSWRDIID 40
          P +++  IF  L +  L++   + K W  +  
Sbjct: 5  PDELLLGIFSCLCLPELLKVSGVCKRWYRLAS 36

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	266
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.3
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.67
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.67
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.39
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.57
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	97.13
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	97.1
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.15

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.2e-12  Score=75.69  Aligned_cols=39  Identities=18%  Similarity=0.393  Sum_probs=36.4

Q ss_pred             CCCCCHHHHHHHhccCChhhHHHHHhhhHhHHHHhcCCHH
Q 042334            5 EVKVPADIVYEIFIRLPVKSLMRFRSISKSWRDIIDGSLR   44 (266)
Q Consensus         5 ~~~LP~Dll~~IL~rLP~~~l~r~~~VcK~Wr~~i~~s~~   44 (266)
                      ++.||+|++.+||++||++++++++.|||+|+.++. ++.
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~-~~~   39 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS-DES   39 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT-CGG
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC-Ccc
Confidence            367999999999999999999999999999999998 765

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.67  E-value=6e-09  Score=72.23  Aligned_cols=44  Identities=23%  Similarity=0.471  Sum_probs=37.1

Q ss_pred             CCCCHHHHHHHhccCChhhHHHHHhhhHhHHHHhcCCHH-HHHHH
Q 042334            6 VKVPADIVYEIFIRLPVKSLMRFRSISKSWRDIIDGSLR-FANMH   49 (266)
Q Consensus         6 ~~LP~Dll~~IL~rLP~~~l~r~~~VcK~Wr~~i~~s~~-F~~~~   49 (266)
                      +.||+||+.+||++|++++|++++.|||+|+.++.+++. ..+.+
T Consensus         7 ~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~LWr~l~   51 (100)
T d1nexb1           7 TSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLL   51 (100)
T ss_dssp             HHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHHHHHHH
T ss_pred             hhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence            469999999999999999999999999999999862555 33433

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=1.1e-08  Score=71.15  Aligned_cols=45  Identities=13%  Similarity=0.217  Sum_probs=39.7

Q ss_pred             CCCCCHHHHHHHhccCChhhHHHHHhhhHhHHHHhcCCHHHHHHHH
Q 042334            5 EVKVPADIVYEIFIRLPVKSLMRFRSISKSWRDIIDGSLRFANMHM   50 (266)
Q Consensus         5 ~~~LP~Dll~~IL~rLP~~~l~r~~~VcK~Wr~~i~~s~~F~~~~~   50 (266)
                      .+.||+||+.+||++|++++|+++++|||+|+.++. ++.+=+...
T Consensus        19 i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~-~~~lW~~~~   63 (102)
T d2ovrb1          19 ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAE-DNLLWREKC   63 (102)
T ss_dssp             TTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHT-CSHHHHHHH
T ss_pred             hhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHC-CHHHHHHHH
Confidence            467999999999999999999999999999999999 777654443

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=1.1e-07  Score=67.74  Aligned_cols=40  Identities=20%  Similarity=0.172  Sum_probs=35.6

Q ss_pred             CCHHHHHHHhccCChhhHHHHHhhhHhHHHHhcCCHHHHHH
Q 042334            8 VPADIVYEIFIRLPVKSLMRFRSISKSWRDIIDGSLRFANM   48 (266)
Q Consensus         8 LP~Dll~~IL~rLP~~~l~r~~~VcK~Wr~~i~~s~~F~~~   48 (266)
                      |++||+..||++|++++|.++++|||.|+.++. ++.+=+.
T Consensus        18 l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~-d~~lWk~   57 (118)
T d1p22a1          18 GLDHIAENILSYLDAKSLCAAELVCKEWYRVTS-DGMLWKK   57 (118)
T ss_dssp             TCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHH-HTTHHHH
T ss_pred             ChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHc-CHHHHHH
Confidence            446999999999999999999999999999999 7766544

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.57  E-value=0.00017  Score=60.27  Aligned_cols=123  Identities=15%  Similarity=0.132  Sum_probs=77.6

Q ss_pred             cCeEEEeeecc---------CCceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEeecCC
Q 042334          113 AYGLLLLQDCW---------AGRNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGREPR  183 (266)
Q Consensus       113 ~~Glll~~~~~---------~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~  183 (266)
                      .+|-|++..+.         .......++||.|++|..+|++...+..        ...+..+..   +-+|+++.... 
T Consensus        29 ~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~--------~~~~~~~~~---~g~i~v~Gg~~-   96 (387)
T d1k3ia3          29 TSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDM--------FCPGISMDG---NGQIVVTGGND-   96 (387)
T ss_dssp             TTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCC--------SSCEEEECT---TSCEEEECSSS-
T ss_pred             eCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCccc--------ceeEEEEec---CCcEEEeecCC-
Confidence            67888776542         1122478999999999988777654322        112223222   33555554322 


Q ss_pred             CcceEEEEEcCCCCcccc-CCCccccccchhhhccccccceEEcCeEeee-eccCCCCCccEEEEEEcCCCeeccc
Q 042334          184 NNLEIEVYTLGTHSWRHA-SPSSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFGSDHEARIISFDFKNEQLNET  257 (266)
Q Consensus       184 ~~~~~~vyss~t~~W~~~-~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~~~~~~~il~fD~~~~~~~~i  257 (266)
                       ...+++|+..++.|+.. .+|.......         ..+..||.+|.+ ...........+..||+.+.+|..+
T Consensus        97 -~~~~~~yd~~~~~w~~~~~~~~~r~~~~---------~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~  162 (387)
T d1k3ia3          97 -AKKTSLYDSSSDSWIPGPDMQVARGYQS---------SATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSL  162 (387)
T ss_dssp             -TTCEEEEEGGGTEEEECCCCSSCCSSCE---------EEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEE
T ss_pred             -CcceeEecCccCcccccccccccccccc---------eeeecCCceeeeccccccccccceeeeecCCCCceeec
Confidence             35789999999999988 5554322222         144558999888 4332223345688999999999876

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.002  Score=51.05  Aligned_cols=110  Identities=15%  Similarity=0.114  Sum_probs=70.4

Q ss_pred             ceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEee---cC---CCcceEEEEEcCCCCcc
Q 042334          126 RNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGR---EP---RNNLEIEVYTLGTHSWR  199 (266)
Q Consensus       126 ~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~---~~---~~~~~~~vyss~t~~W~  199 (266)
                      -..+.++||.|++|..+++++..+.  .      .  +....   ++ +++++..   ..   .....+++|+..++.|+
T Consensus        18 ~~~~~~yd~~t~~W~~~~~~p~~R~--~------~--~~~~~---~~-~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~   83 (288)
T d1zgka1          18 LSYLEAYNPSNGTWLRLADLQVPRS--G------L--AGCVV---GG-LLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS   83 (288)
T ss_dssp             CCCEEEEETTTTEEEECCCCSSCCB--S------C--EEEEE---TT-EEEEECCEEEETTEEEECCCEEEEETTTTEEE
T ss_pred             CceEEEEECCCCeEEECCCCCCccc--e------e--EEEEE---CC-EEEEEeCcccCCCCccccchhhhccccccccc
Confidence            3467899999999999998875421  1      1  12221   12 4555521   11   12457899999999999


Q ss_pred             cc-CCCccccccchhhhccccccceEEcCeEeeeeccCCCCCccEEEEEEcCCCeecccCC
Q 042334          200 HA-SPSSIRLSNNKLQLQCLSEFGLSAYGDMHWKNWEFGSDHEARIISFDFKNEQLNETPL  259 (266)
Q Consensus       200 ~~-~~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~~~~~~~~~~~~il~fD~~~~~~~~i~l  259 (266)
                      .+ .+|... ....         .+.++|++|.+..............+|..+++|...+.
T Consensus        84 ~~~~~p~~r-~~~~---------~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~  134 (288)
T d1zgka1          84 PCAPMSVPR-NRIG---------VGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAP  134 (288)
T ss_dssp             ECCCCSSCC-BTCE---------EEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCC
T ss_pred             cccccccee-ccee---------ccccceeeEEecceecccccceeeeeccccCccccccc
Confidence            98 444332 2222         67889999998222223334567889999999987733

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.0014  Score=52.09  Aligned_cols=113  Identities=15%  Similarity=0.073  Sum_probs=73.8

Q ss_pred             ceeEEEEcccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEe-ec-CCCcceEEEEEcCCCCcccc-C
Q 042334          126 RNKLFLCNPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLG-RE-PRNNLEIEVYTLGTHSWRHA-S  202 (266)
Q Consensus       126 ~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-~~-~~~~~~~~vyss~t~~W~~~-~  202 (266)
                      ...+.++||.+.+|...+..+....         .......     ..+++.+. .+ ........+|+..++.|..+ .
T Consensus       163 ~~~~~~~d~~~~~~~~~~~~~~~~~---------~~~~~~~-----~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~  228 (288)
T d1zgka1         163 LNSAECYYPERNEWRMITAMNTIRS---------GAGVCVL-----HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP  228 (288)
T ss_dssp             CCCEEEEETTTTEEEECCCCSSCCB---------SCEEEEE-----TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCC
T ss_pred             cceEEEeeccccccccccccccccc---------cccccce-----eeeEEEecCccccccccceeeeeecceeeecccC
Confidence            3467889999999998887764421         1111111     13444442 22 23456788999999999988 4


Q ss_pred             CCccccccchhhhccccccceEEcCeEeee-eccCCCCCccEEEEEEcCCCeeccc-CCCCCC
Q 042334          203 PSSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFGSDHEARIISFDFKNEQLNET-PLPDFR  263 (266)
Q Consensus       203 ~p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~~  263 (266)
                      .|.. .....         .+.++|.||.+ ..+ .......|.+||+.+.+|+.+ ++|..|
T Consensus       229 ~p~~-r~~~~---------~~~~~~~l~v~GG~~-~~~~~~~v~~yd~~~~~W~~~~~~p~~R  280 (288)
T d1zgka1         229 MKHR-RSALG---------ITVHQGRIYVLGGYD-GHTFLDSVECYDPDTDTWSEVTRMTSGR  280 (288)
T ss_dssp             CSSC-CBSCE---------EEEETTEEEEECCBC-SSCBCCEEEEEETTTTEEEEEEECSSCC
T ss_pred             ccCc-ccceE---------EEEECCEEEEEecCC-CCeecceEEEEECCCCEEEECCCCCCCc
Confidence            4432 22222         67889999998 332 233455789999999999999 677765

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.15  E-value=0.0064  Score=50.12  Aligned_cols=104  Identities=7%  Similarity=-0.036  Sum_probs=62.1

Q ss_pred             cccccceeccCCCCCCCCCCCcCCCCcceeeeeecCCCCCeEEEEEee--c------CCCcceEEEEEcCCCCcccc-CC
Q 042334          133 NPLRGEVLELPKPLQDCSKDFLLPRSLTSYGIGFDSATNSYKIVRLGR--E------PRNNLEIEVYTLGTHSWRHA-SP  203 (266)
Q Consensus       133 NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~--~------~~~~~~~~vyss~t~~W~~~-~~  203 (266)
                      .|.+++|...++.|...          .  +....+.  +=||+++..  .      ......+++|+..++.|+.. ..
T Consensus         5 ~p~~g~W~~~~~~p~~~----------~--~~a~~~~--~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~   70 (387)
T d1k3ia3           5 QPGLGRWGPTIDLPIVP----------A--AAAIEPT--SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVT   70 (387)
T ss_dssp             CTTSCEEEEEEECSSCC----------S--EEEEETT--TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEE
T ss_pred             CCCCCccCCcCCCCccc----------c--EEEEEee--CCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCC
Confidence            58899998887766431          1  1122222  236777632  1      11334688999999999876 22


Q ss_pred             CccccccchhhhccccccceEEcCeEeee-eccCCCCCccEEEEEEcCCCeeccc-CCCCC
Q 042334          204 SSIRLSNNKLQLQCLSEFGLSAYGDMHWK-NWEFGSDHEARIISFDFKNEQLNET-PLPDF  262 (266)
Q Consensus       204 p~~~~~~~~~~~~~~~~~~v~~~G~~yw~-~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~  262 (266)
                      +......+.       ...+..+|.+|+. ..+     ...+..||..+++|..+ .+|..
T Consensus        71 ~~~~~~~~~-------~~~~~~~g~i~v~Gg~~-----~~~~~~yd~~~~~w~~~~~~~~~  119 (387)
T d1k3ia3          71 VTKHDMFCP-------GISMDGNGQIVVTGGND-----AKKTSLYDSSSDSWIPGPDMQVA  119 (387)
T ss_dssp             ECSCCCSSC-------EEEECTTSCEEEECSSS-----TTCEEEEEGGGTEEEECCCCSSC
T ss_pred             CCCccccee-------EEEEecCCcEEEeecCC-----CcceeEecCccCccccccccccc
Confidence            111111111       0145678999998 444     34688999999999877 44433