Citrus Sinensis ID: 042337

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230------
Protein Sequence
MFTSSSKFSISCLFRQRYNHVPKFGNWETEEHVPYSLYFDEARKRRNAAKINPNDTHENQNTISDNLASIKTSTFETETKSGAQNGREDGDLRRPTESPWYHHTVNIEVAINSLVHRPGRKMTTRQQNAGFDSRIGRSPISPWRNYSTGCSQRRSVTQGAETTDHTAAVPEFGDWDEPDPTSADGYTYIFNQVREERLKGTGNVAAAATPGKPHYKDLKKHKNGAFKKCCCFPVPW
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHcccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEHHHHHHHHHHHccccccccccccccccccccccccccccEEEEccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHcccccccccccccccccccEEHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccHHHHccccccccccccccccccccccccccccccEEEcccccc
Coil and Loop (DISEMBL)
mftssskfsisCLFRqrynhvpkfgnweteehvpyslYFDEARKRRNaakinpndthenqntisDNLAsiktstfetetksgaqngredgdlrrptespwyhhTVNIEVAINSlvhrpgrkmttrqqnagfdsrigrspispwrnystgcsqrrsvtqgaettdhtaavpefgdwdepdptsadgyTYIFNQVREERLkgtgnvaaaatpgkphykdlkkhkngafkkcccfpvpw
Flexible Loop (DISEMBL)
mftssskfsisclFRQRYNHvpkfgnweteehVPYSLYFDEARKRRNAAkinpndthenqntisdnlASIKTSTfetetksgaqngredgdlRRPTESPWYHHTVNIEVAINSLVHRPGRKMTtrqqnagfdsrigrspispwrNYSTGCSQRRSVTQGAETTdhtaavpefgdwdepdpTSADGYTYIFNQVREERLKGTGNVAaaatpgkphykdlkkhkngafkkcccfpvpw
Low Complexity Region (SEG)
MFTSSSKFSISCLFRQRYNHVPKFGNWETEEHVPYSLYFDEARKRRNAAKINPNDTHENQNTISDNLASIKTSTFETETKSGAQNGREDGDLRRPTESPWYHHTVNIEVAINSLVHRPGRKMTTRQQNAGFDSRIGRSPISPWRNYSTGCSQRRSVTQGAETTDHTAAVPEFGDWDEPDPTSADGYTYIFNQVREERLKGTGNVAAAATPGKPHYKDLKKHKNGAFKKCCCFPVPW
Disordered region (IsUnstruct)
*******FSISCLFRQRYNHVPKFGNWETEEHVPYSLYFD***********************************************************WYHHTVNIEVAINSLVH*******************************************************************DGYTYIFNQVREERLKG********************HKNGAFKKCCCFPV**
Disordered Region (DISOPRED)
************************GNWETEEHVPYSLYF************************************************************************************************************************************FGDWDEPDPTSADGYTYIFN**************************************CCFPVPW
Disordered Region (DISEMBL)
********SISCLFRQRYNHVPKFGNWETEEHVPYSLYFDEARKRRNAAKINPNDTHENQNTISDNLASIKTSTFETETKSGAQNGREDGDLRRPTESPWYHHTVNIEVAINSLVHRPGRKMTTRQQNAGFDSRIGRSPISPWRNYS****************DHTAAVPEFGDWDEPDPTSADGYTYIFNQVREERLKGTGNVAAAATPGKPHYKDLKKHKNGAFKKCCCFPVPW
Disordered Region (DISPRO)
*******FSISCLFRQRYNHVPKFGNWETEEHVPYSLYFDEARKRRNAAKIN******************************************************************************************************************AAVPEFGDWDEPDPTSADGYTYIFNQVRE******************************FKKCCCFPVPW
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFTSSSKFSISCLFRQRYNHVPKFGNWETEEHVPYSLYFDEARKRRNAAKINPNDTHENQNTISDNLASIKTSTFETETKSGAQNGREDGDLRRPTESPWYHHTVNIEVAINSLVHRPGRKMTTRQQNAGFDSRIGRSPISPWRNYSTGCSQRRSVTQGAETTDHTAAVPEFGDWDEPDPTSADGYTYIFNQVREERLKGTGNVAAAATPGKPHYKDLKKHKNGAFKKCCCFPVPW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	236	2.2.26 [Sep-21-2011]
Q8GYN5	211	RPM1-interacting protein	yes	no	0.843	0.943	0.361	1e-21

>sp|Q8GYN5|RIN4_ARATH RPM1-interacting protein 4 OS=Arabidopsis thaliana GN=RIN4 PE=1 SV=1

 Score =  103 bits (257), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/216 (36%), Positives = 111/216 (51%), Gaps = 17/216 (7%)

Query: 20  HVPKFGNWETEEHVPYSLYFDEARKRRNAAK--INPNDTHENQNTISDNLASIKTSTFET 77
           +VPKFGNWE EE+VPY+ YFD+ARK R      +NPND   N ++ S       +S  + 
Sbjct: 5   NVPKFGNWEAEENVPYTAYFDKARKTRAPGSKIMNPNDPEYNSDSQSQAPPHPPSSRTKP 64

Query: 78  ETKSGAQNGREDGDLRRPTESPWYHHTVNIEVAINSLVHRPGRKMTTRQQNAGFDSRIGR 137
           E     +  RE   +R   ES           +  +   R GR      QN  +D++   
Sbjct: 65  EQVDTVRRSREH--MRSREESELKQFGDAGGSSNEAANKRQGRA----SQNNSYDNK--- 115

Query: 138 SPISPWRNYSTGCSQRRSVTQGA-ETTDHTAAVPEFGDWDEPDPTSADGYTYIFNQVREE 196
           SP+       TG S+ +     A E+ +    VP+FGDWDE +P+SADGYT+IFN+VREE
Sbjct: 116 SPLHKNSYDGTGKSRPKPTNLRADESPEKVTVVPKFGDWDENNPSSADGYTHIFNKVREE 175

Query: 197 RLKGTGNVAAAATPGKPHYKDLKKHKNGAFKKCCCF 232
           R  G  NV+ ++    P ++  +   N +   CCCF
Sbjct: 176 RSSG-ANVSGSSR--TPTHQSSRNPNNTS--SCCCF 206

Essential regulator of plant defense, which plays a central role in resistance in case of infection by a pathogen. It is a common target for both type III avirulence proteins from P.syringae (AvrB, AvrRpm1 and AvrRpt2) and for the plant Resistance (R) proteins RPM1 and RPS2. In strains carrying the appropriate R gene for avirulence proteins of the pathogen, its association with avirulence proteins triggers a defense system including the hypersensitive response, which limits the spread of disease. In contrast, in plants lacking appropriate R genes, its association with avirulence proteins of the pathogen impairs the defense system and leads to the pathogen multiplication.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
359496001	261	PREDICTED: RPM1-interacting protein 4-li	0.889	0.804	0.391	1e-32
217071664	260	unknown [Medicago truncatula]	0.877	0.796	0.378	2e-30
297741778	191	unnamed protein product [Vitis vinifera]	0.745	0.921	0.414	4e-29
147788436	599	hypothetical protein VITISV_002333 [Viti	0.868	0.342	0.380	6e-29
388514385	250	unknown [Lotus japonicus]	0.885	0.836	0.372	7e-29
217071162	248	unknown [Medicago truncatula]	0.851	0.810	0.384	9e-29
388493042	248	unknown [Medicago truncatula]	0.851	0.810	0.384	1e-28
224065399	264	predicted protein [Populus trichocarpa]	0.898	0.803	0.361	3e-28
388500428	260	unknown [Medicago truncatula]	0.881	0.8	0.360	4e-28
215789965	239	RIN4-like protein [Malus x domestica]	0.864	0.853	0.380	2e-27

>gi|359496001|ref|XP_002265336.2| PREDICTED: RPM1-interacting protein 4-like [Vitis vinifera]

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 101/258 (39%), Positives = 136/258 (52%), Gaps = 48/258 (18%)

Query: 19  NHVPKFGNWETEEHVPYSLYFDEARKRRNAAKI-NPNDTHENQNTISDNLASIKT---ST 74
           +HVPKFGNWE+EE+VPY+ YFD+ARK R   KI NPND  EN +  SDN +  ++   + 
Sbjct: 5   SHVPKFGNWESEENVPYTAYFDKARKGRTGTKIINPNDPQENPDMFSDNASEARSPPRTR 64

Query: 75  FETETKSGAQN------GREDGDLRRPTESPWYHHTVNIEVAINSLVHRPG-RKMTTRQQ 127
            E E   G Q        +EDGD ++ T+SP  +  +    +  S   R G R M + + 
Sbjct: 65  AEQEESIGQQVTHEHRLSKEDGDQKQVTDSPARNDNLGRRPSTESTHQRQGGRGMNSGET 124

Query: 128 ------NAGFDSRIGRSPISP---------------WR--------NYSTGCSQRRSVTQ 158
                 + G +  I RSP+ P               W         ++ T    R   T+
Sbjct: 125 YRKPRTSGGSEHSIDRSPLHPHHQARIAGRGTGSPSWEGKGSSYDSSHGTPGRSRMKPTR 184

Query: 159 GAETTDHTAAVPEFGDWDEPDPTSADGYTYIFNQVREERLKGTGNVAAAATPG---KPHY 215
           G E+ D  AAVP+FGDWDE +P+SADGYT+IFN+VREER  G    AA   PG   +P Y
Sbjct: 185 GDESPDKGAAVPKFGDWDENNPSSADGYTHIFNKVREERQTG----AATRVPGMASEPSY 240

Query: 216 KDLKKHKNGAFKKCCCFP 233
           +  +KH N +  K CCFP
Sbjct: 241 QTNRKH-NTSSSKSCCFP 257

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217071664|gb|ACJ84192.1| unknown [Medicago truncatula]

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/256 (37%), Positives = 135/256 (52%), Gaps = 49/256 (19%)

Query: 20  HVPKFGNWETEEHVPYSLYFDEARKRRNAAK-INPNDTHENQNTISDNLASIKTSTFETE 78
           HVPKFGNWE+ ++VPY+ YFDEARK R   K INPND  EN + + DN +S       T+
Sbjct: 6   HVPKFGNWESNDNVPYTAYFDEARKGRTGTKMINPNDPEENVDLVLDNSSSDHPPPSNTK 65

Query: 79  TKSGAQN--GRE------------DGDLRRPTESPWYHHTVNIEVAINSLVHRPG----- 119
            ++ +++  G+             DGD ++  +SP  H   +   + N    RPG     
Sbjct: 66  PRANSEDLSGKGLVRSTIESHKSLDGDPKQYVDSPARHDNASNRSS-NDSTPRPGVGSAD 124

Query: 120 -RKMTTRQQNAGFDSRIGRSPI-----------SP-WRNYST---------GCSQRRSVT 157
            R+  +RQ  AG +  + RSP+           SP W   +          G S+ R   
Sbjct: 125 NRRRPSRQSTAGSEHSVERSPLHRQARAPAGRDSPSWEGKNNSYDSSHGTPGRSRLRPAN 184

Query: 158 QGAETTDHTAAVPEFGDWDEPDPTSADGYTYIFNQVREERLKGTGNVAAAATPG-KPHYK 216
           +G ET D  AAVP+FGDWD  +P SADGYT+IFN+VREER  G G+  A  TP  +PH  
Sbjct: 185 RGDETPDKGAAVPKFGDWDVSNPASADGYTHIFNKVREERQGGAGH--APGTPNERPH-- 240

Query: 217 DLKKHKNGAFKKCCCF 232
            + +++N    +CCCF
Sbjct: 241 -VIRNQNNDKAQCCCF 255

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741778|emb|CBI33050.3| unnamed protein product [Vitis vinifera]

 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 92/222 (41%), Positives = 118/222 (53%), Gaps = 46/222 (20%)

Query: 19  NHVPKFGNWETEEHVPYSLYFDEARKRRNAAKI-NPNDTHENQNTISDNLASIKT---ST 74
           +HVPKFGNWE+EE+VPY+ YFD+ARK R   KI NPND  EN +  SDN +  ++   + 
Sbjct: 5   SHVPKFGNWESEENVPYTAYFDKARKGRTGTKIINPNDPQENPDMFSDNASEARSPPRTR 64

Query: 75  FETETKSGAQNGREDGDLRRPTESPWYHHTVNIEVAINSLVHRPGRKMTTRQQNAGFDSR 134
            E E   G Q   E    RRP+                          +T Q+  G  S 
Sbjct: 65  AEQEESIGQQVTHE---HRRPSTE------------------------STHQRQGGKGSS 97

Query: 135 IGRSPISPWRNYSTGCSQRRSVTQGAETTDHTAAVPEFGDWDEPDPTSADGYTYIFNQVR 194
              S  +P R+       R   T+G E+ D  AAVP+FGDWDE +P+SADGYT+IFN+VR
Sbjct: 98  YDSSHGTPGRS-------RMKPTRGDESPDKGAAVPKFGDWDENNPSSADGYTHIFNKVR 150

Query: 195 EERLKGTGNVAAAATPG---KPHYKDLKKHKNGAFKKCCCFP 233
           EER  G    AA   PG   +P Y+  +KH N +  K CCFP
Sbjct: 151 EERQTG----AATRVPGMASEPSYQTNRKH-NTSSSKSCCFP 187

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147788436|emb|CAN63304.1| hypothetical protein VITISV_002333 [Vitis vinifera]

 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 96/252 (38%), Positives = 131/252 (51%), Gaps = 47/252 (18%)

Query: 19  NHVPKFGNWETEEHVPYSLYFDEARKRRNAAKI-NPNDTHENQNTISDNLASIKT---ST 74
           +HVPKFGNWE+EE+VPY+ YFD+ARK R   KI NPND  EN +  SDN +  ++   + 
Sbjct: 12  SHVPKFGNWESEENVPYTAYFDKARKGRTGTKIINPNDPQENPDMFSDNASEARSPPRTR 71

Query: 75  FETETKSGAQN------GREDGDLRRPTESPWYHHTVNIEVAINSLVHRPG-RKMTTRQQ 127
            E E   G Q        +EDGD ++ T+SP  +  +    +  S   R G R M + + 
Sbjct: 72  AEQEESIGQQVTHEHRLSKEDGDQKQVTDSPARNDNLGRRPSTESTHQRQGGRGMNSGET 131

Query: 128 ------NAGFDSRIGRSPISP---------------WR--------NYSTGCSQRRSVTQ 158
                 + G +  I RSP+ P               W         ++ T    R   T+
Sbjct: 132 YRKPRTSGGSEHSIDRSPLHPHHQARIAGRGTGSPSWEGKGSSYDSSHGTPGRSRMKPTR 191

Query: 159 GAETTDHTAAVPEFGDWDEPDPTSADGYTYIFNQVREERLKGTGNVAAAATPG---KPHY 215
           G E+ D  AAVP+FGDWDE +P+SADGYT+IFN+VREER  G    AA   PG   +P Y
Sbjct: 192 GDESPDKGAAVPKFGDWDENNPSSADGYTHIFNKVREERQTG----AATRVPGMASEPSY 247

Query: 216 KDLKKHKNGAFK 227
           +  +KH   + K
Sbjct: 248 QTNRKHNTSSSK 259

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388514385|gb|AFK45254.1| unknown [Lotus japonicus]

 Score =  133 bits (334), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 91/244 (37%), Positives = 125/244 (51%), Gaps = 35/244 (14%)

Query: 20  HVPKFGNWETEEHVPYSLYFDEARKRRNAAK-INPNDTHENQNTISDN--LASIKTSTFE 76
           HVPKFGNW+ E++VPY+ YFD+ARK R   K INPND  EN + + DN    S      +
Sbjct: 6   HVPKFGNWDGEDNVPYTAYFDKARKDRTGTKMINPNDPEENSDLVLDNNLPPSKSKPGVD 65

Query: 77  TETKSGAQNGRE---------DGDLRRPTESPWYHHTVNIEVAINSLVHRPGRKMTTRQQ 127
           +E  SG  + R          DGD ++  +SP      +        V     +    +Q
Sbjct: 66  SEDPSGKGSARSTYESHRSMADGDPKQFVDSPARQANDSAPRYGGQGVGSADNRKRPSRQ 125

Query: 128 NAGFDSRIGRSPI----------SP-WRNYST--------GCSQRRSVTQGAETTDHTAA 168
           + G +  I RSP+          SP W   S+        G S+ R V +G ET +  AA
Sbjct: 126 STGSEYSIERSPLHRQAKTPGRDSPSWEGKSSYDSNHGTPGRSRLRPVNRGDETPEKGAA 185

Query: 169 VPEFGDWDEPDPTSADGYTYIFNQVREERLKGTGNVAAAATPGKPHYKDLKKHKNGAFKK 228
           VP+FG+WD  +P SADG+T+IFN+VREER  G GN  A  TP +PH   ++   +    +
Sbjct: 186 VPKFGEWDVSNPASADGFTHIFNKVREERQGGAGN--ALGTPERPHV--IRSQPSNDKVQ 241

Query: 229 CCCF 232
           CCCF
Sbjct: 242 CCCF 245

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217071162|gb|ACJ83941.1| unknown [Medicago truncatula]

 Score =  132 bits (333), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 96/250 (38%), Positives = 131/250 (52%), Gaps = 49/250 (19%)

Query: 20  HVPKFGNWETEEHVPYSLYFDEARKRRNAAK-INPNDTHEN-----QNTISDNLASIKTS 73
           HVPKFGNWE E+ VPY++YFD+ARK R  +K INPND  EN     QN+ SD++   K  
Sbjct: 7   HVPKFGNWEGEDDVPYTVYFDKARKSRPGSKMINPNDPEENPDLVLQNSSSDDVIPPKPR 66

Query: 74  -TFETETKSGA--------QNGREDGDLRRPTESPWYHHTVNIEVAINSLVHRPGRKMTT 124
            + E +++ G         Q  +E+GD++    SP       +  A +       R+  +
Sbjct: 67  VSSENQSEKGTVRLTHNDLQKNKEEGDVKHSVNSPARPGGHGVGSADS-------RRRPS 119

Query: 125 RQQNAGFDSRIGRSPI----------SP-WRNYST--------GCSQRRSVTQGAETTDH 165
           RQ  A  +  + RSP+          SP W   ST        G S+ R V +  E  D 
Sbjct: 120 RQSTASSEYSVERSPLHRQAKTPGRDSPSWEGKSTYDSSHGTPGRSRLRPVNRDDEIPDK 179

Query: 166 TAAVPEFGDWDEPDPTSADGYTYIFNQVREERLKGTGNVAAAATPGKPH---YKDLKKHK 222
           +AAVP+FG+WDE DP SADGYT+IFN+VREE+     +VAA  TPG P+   Y    +  
Sbjct: 180 SAAVPKFGEWDESDPASADGYTHIFNKVREEK-----HVAAGNTPGTPNGRSYVIRNQPA 234

Query: 223 NGAFKKCCCF 232
           N   + CC F
Sbjct: 235 NDKAQGCCFF 244

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388493042|gb|AFK34587.1| unknown [Medicago truncatula]

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 96/250 (38%), Positives = 131/250 (52%), Gaps = 49/250 (19%)

Query: 20  HVPKFGNWETEEHVPYSLYFDEARKRRNAAK-INPNDTHEN-----QNTISDNLASIKTS 73
           HVPKFGNWE E+ VPY++YFD+ARK R  +K INPND  EN     QN+ SD++   K  
Sbjct: 7   HVPKFGNWEGEDDVPYTVYFDKARKSRPGSKMINPNDPEENPDLVLQNSSSDDVIPPKPR 66

Query: 74  -TFETETKSGA--------QNGREDGDLRRPTESPWYHHTVNIEVAINSLVHRPGRKMTT 124
            + E +++ G         Q  +E+GD++    SP       +  A +       R+  +
Sbjct: 67  VSSENQSEKGTVRLTHNDLQKNKEEGDVKHSVNSPARPGGHGVGSADS-------RRRPS 119

Query: 125 RQQNAGFDSRIGRSPI----------SP-WRNYST--------GCSQRRSVTQGAETTDH 165
           RQ  A  +  + RSP+          SP W   ST        G S+ R V +  E  D 
Sbjct: 120 RQSTASSEYSVERSPLHRQAKTPGRDSPSWEGKSTYDSSHGTPGRSRLRPVNRDDEIPDK 179

Query: 166 TAAVPEFGDWDEPDPTSADGYTYIFNQVREERLKGTGNVAAAATPGKPH---YKDLKKHK 222
           +AAVP+FG+WDE DP SADGYT+IFN+VREE+     +VAA  TPG P+   Y    +  
Sbjct: 180 SAAVPKFGEWDEGDPASADGYTHIFNKVREEK-----HVAAGNTPGTPNGRSYVIRNQPA 234

Query: 223 NGAFKKCCCF 232
           N   + CC F
Sbjct: 235 NDKAQGCCFF 244

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065399|ref|XP_002301798.1| predicted protein [Populus trichocarpa] gi|222843524|gb|EEE81071.1| predicted protein [Populus trichocarpa]

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 93/257 (36%), Positives = 129/257 (50%), Gaps = 45/257 (17%)

Query: 20  HVPKFGNWETEEHVPYSLYFDEARKRRNAAK-INPNDTHENQNTISDNLASIKTSTF--- 75
           HVPKFGNWE+EE+VPY+ YFD+ARK R   K INPND  EN + +SD  A  +   F   
Sbjct: 6   HVPKFGNWESEENVPYTAYFDKARKGRTGGKMINPNDPQENPDLVSDYAAPDQAPPFRAK 65

Query: 76  ---ETETKSGA-------QNGREDGDLRRPTESPWYHHTVNIEVAINSLVHRPGRKMTT- 124
              E     GA       +  RE+ DL++   SP  +  +N   +      R G +  + 
Sbjct: 66  APPEEAAGQGAVRQAHEHRTSREESDLKQFANSPARNENLNRRASYEPAPQRYGGRGPSF 125

Query: 125 -------RQQNAGFDSRIGRSPI--------------SP-W--RNYSTGC----SQRRSV 156
                   + + G ++ + +SPI              SP W  +N + G      + R  
Sbjct: 126 GEAHKRPARYSIGSENSMEQSPIHNHARISGRNSGAPSPSWEGKNSNDGSHGTPGRSRLR 185

Query: 157 TQGAETTDHTAAVPEFGDWDEPDPTSADGYTYIFNQVREERLKGTGNVAAAATPGKPHYK 216
            +G E+ D  AAVP+FGDWDE +P+SADGYT+IFN+VREE+  G G +    T     Y 
Sbjct: 186 PKGDESPDKGAAVPKFGDWDENNPSSADGYTHIFNKVREEKQIGEGKMPGMPTESSNAY- 244

Query: 217 DLKKHKNGAFKKCCCFP 233
            ++K       KCCCFP
Sbjct: 245 -VRKQTPSDSAKCCCFP 260

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500428|gb|AFK38280.1| unknown [Medicago truncatula]

 Score =  130 bits (327), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 92/255 (36%), Positives = 134/255 (52%), Gaps = 47/255 (18%)

Query: 20  HVPKFGNWETEEHVPYSLYFDEARKRRNAAK-INPNDTHENQNTISDNLASIKTSTFETE 78
           HVPKFGNWE+ ++VPY+ YFD+ARK R   K INP+D  EN + + DN +S       T+
Sbjct: 6   HVPKFGNWESNDNVPYTAYFDKARKGRTGTKMINPSDPEENVDLVLDNSSSDHPPPSNTK 65

Query: 79  TKSGAQN--GRE------------DGDLRRPTESPWYHHTVNIEVAINS-----LVHRPG 119
            ++ +++  G+             DGD ++  +SP  H   +   + +S     +     
Sbjct: 66  PRANSEDLSGKGLVRSTIESHKSLDGDPKQYVDSPARHDNASNRSSNDSTPRLGVGSADN 125

Query: 120 RKMTTRQQNAGFDSRIGRSPI-----------SP-WRNYST---------GCSQRRSVTQ 158
           R+  +RQ  AG +  + RSP+           SP W   +          G S+ R   +
Sbjct: 126 RRRPSRQSTAGSEHSVERSPLHRQARAPAGRDSPSWEGKNNSYDSSHGTPGRSRLRPANR 185

Query: 159 GAETTDHTAAVPEFGDWDEPDPTSADGYTYIFNQVREERLKGTGNVAAAATPG-KPHYKD 217
           G ET D  AAVP+FGDWD  +P SADGYT+IFN+VREER  G G+  A  TP  +PH   
Sbjct: 186 GDETPDKGAAVPKFGDWDVSNPASADGYTHIFNKVREERQGGAGH--APGTPNERPH--- 240

Query: 218 LKKHKNGAFKKCCCF 232
           + +++N    +CCCF
Sbjct: 241 VIRNQNNDKAQCCCF 255

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|215789965|gb|ACJ70052.1| RIN4-like protein [Malus x domestica]

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/242 (38%), Positives = 121/242 (50%), Gaps = 38/242 (15%)

Query: 19  NHVPKFGNWETEEHVPYSLYFDEARKRRNAA---KINPNDTHENQNTISDNLASIKTSTF 75
           +HVPKFGNWE +E VPY+ YFD+ARK R       INPND  EN + +SD  AS      
Sbjct: 5   SHVPKFGNWEDQESVPYTAYFDKARKGRTGVGGKMINPNDPEENPDILSDTSASSPPKVR 64

Query: 76  ETETKS--GAQNGREDGDLRRPTESPWY-----HHTVNIEVAINS-LVHRPGRKMTTRQQ 127
               K     +  RED DLR    SP        H  N    ++S   HR        + 
Sbjct: 65  PEPGKPVHERRRSREDNDLRF-ANSPAQRRSSGEHQPNRGRGVSSGETHR-----RAARP 118

Query: 128 NAGFDSRIGRSPI----------SP-WRNYST-----GCSQRRSVTQGAETTDHTAAVPE 171
           +AG ++ + RSP+          SP W   ++     G   R  +    E+ +  AAVP+
Sbjct: 119 SAGSENSVERSPLHRNARVSGRDSPSWEGKASYESSHGTPARSRLKPRDESPEKGAAVPK 178

Query: 172 FGDWDEPDPTSADGYTYIFNQVREERLKGTGNVAAAATPGKPHYKDLKKHKNGAFKKCCC 231
           FG+WDE DP SADG+T+IFN+VREE+        A  TP  P Y+D +K  +    KCCC
Sbjct: 179 FGEWDENDPASADGFTHIFNKVREEKAG-----KAPGTPSHPSYQDARKQGSNDSAKCCC 233

Query: 232 FP 233
           FP
Sbjct: 234 FP 235

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
TAIR|locus:2090250	211	RIN4 "RPM1 interacting protein	0.843	0.943	0.371	1.5e-26
TAIR|locus:2058284	73	AT2G04410 "AT2G04410" [Arabido	0.271	0.876	0.422	1.8e-07
TAIR|locus:2176620	130	NOI "AT5G55850" [Arabidopsis t	0.190	0.346	0.469	3.2e-06
TAIR|locus:505006667	73	AT5G40645 "AT5G40645" [Arabido	0.25	0.808	0.359	2e-05
TAIR|locus:2827881	69	AT2G17660 "AT2G17660" [Arabido	0.245	0.840	0.369	5.6e-05
TAIR|locus:2101185	89	AT3G48450 "AT3G48450" [Arabido	0.152	0.404	0.416	0.00012
TAIR|locus:4010713927	68	AT4G35655 "AT4G35655" [Arabido	0.220	0.764	0.346	0.00012
TAIR|locus:504955684	225	AT3G07195 "AT3G07195" [Arabido	0.110	0.115	0.444	0.00021

TAIR|locus:2090250 RIN4 "RPM1 interacting protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 81/218 (37%), Positives = 112/218 (51%)

Query:    19 NHVPKFGNWETEEHVPYSLYFDEARKRRN-AAKI-NPNDTHENQNTISDNLASIKTSTFE 76
             ++VPKFGNWE EE+VPY+ YFD+ARK R   +KI NPND   N ++ S       +S  +
Sbjct:     4 SNVPKFGNWEAEENVPYTAYFDKARKTRAPGSKIMNPNDPEYNSDSQSQAPPHPPSSRTK 63

Query:    77 TETKSGAQNGREDGDLRRPTESPWYHHTV-NIEVAINSLVHRPGRKMTTRQQNAGFDSRI 135
              E     +  RE    R  +E   +     +   A N    R GR      QN  +D++ 
Sbjct:    64 PEQVDTVRRSREHMRSREESELKQFGDAGGSSNEAANK---RQGRA----SQNNSYDNK- 115

Query:   136 GRSPISPWRNYSTGCSQRRSVTQGA-ETTDHTAAVPEFGDWDEPDPTSADGYTYIFNQVR 194
               SP+       TG S+ +     A E+ +    VP+FGDWDE +P+SADGYT+IFN+VR
Sbjct:   116 --SPLHKNSYDGTGKSRPKPTNLRADESPEKVTVVPKFGDWDENNPSSADGYTHIFNKVR 173

Query:   195 EERLKGTGNVAAAATPGKPHYKDLKKHKNGAFKKCCCF 232
             EER  G     ++ TP   H     ++ N     CCCF
Sbjct:   174 EERSSGANVSGSSRTP--THQSS--RNPNNT-SSCCCF 206

GO:0005634 "nucleus" evidence=ISM

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA;TAS

GO:0002237 "response to molecule of bacterial origin" evidence=RCA;IMP

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0034051 "negative regulation of plant-type hypersensitive response" evidence=IMP

GO:0019897 "extrinsic to plasma membrane" evidence=IDA

GO:0009617 "response to bacterium" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

TAIR|locus:2058284 AT2G04410 "AT2G04410" [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 30/71 (42%), Positives = 43/71 (60%)

Query:   164 DHTAAVPEFGDWDEPDPTSADGYTYIFNQVREERLKGTGNVAAAATPGK--PHY-KDLKK 220
             D    +P+FG+WD  DP+SA+G+T IFN+ R E+ KG G    + +PGK  P Y K+ + 
Sbjct:     3 DKGRPLPKFGEWDVNDPSSAEGFTVIFNKARNEK-KGGGK---SDSPGKDEPGYNKNGEV 58

Query:   221 HKNGAFKKCCC 231
              +  A K  CC
Sbjct:    59 LEKPAKKWFCC 69

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2176620 NOI "AT5G55850" [Arabidopsis thaliana (taxid:3702)]

 Score = 111 (44.1 bits), Expect = 3.2e-06, P = 3.2e-06
 Identities = 23/49 (46%), Positives = 31/49 (63%)

Query:   164 DHTAAVPEFGDWDEPDPTSADGYTYIFNQVREERLKGTGNVAAAATPGK 212
             D    +P+FG+WD  DP SA+G+T IFN+ R+E  K TG      +PGK
Sbjct:    19 DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDE--KKTGG--KPGSPGK 63

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0010167 "response to nitrate" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

TAIR|locus:505006667 AT5G40645 "AT5G40645" [Arabidopsis thaliana (taxid:3702)]

 Score = 104 (41.7 bits), Expect = 2.0e-05, P = 2.0e-05
 Identities = 23/64 (35%), Positives = 36/64 (56%)

Query:   169 VPEFGDWDEPDPTSADGYTYIFNQVREERLKGTGNVAAAATPGKPHYKDLKKHKNGAFKK 228
             +P+FG+WD  DP SA+G+T IF + R++  K T     AA+  + + K   +      K+
Sbjct:    15 LPKFGEWDVNDPASAEGFTVIFAKARDD--KKTNASGRAASQRRDNNKSQDEPTK---KR 69

Query:   229 CCCF 232
              CCF
Sbjct:    70 FCCF 73

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0010167 "response to nitrate" evidence=ISS

TAIR|locus:2827881 AT2G17660 "AT2G17660" [Arabidopsis thaliana (taxid:3702)]

 Score = 100 (40.3 bits), Expect = 5.6e-05, P = 5.6e-05
 Identities = 24/65 (36%), Positives = 34/65 (52%)

Query:   168 AVPEFGDWDEPDPTSADGYTYIFNQVREERLKGTGNVAAAATPGKPHYKDLKKHKNGAFK 227
             A+P+FG+WD  DP +ADG+T IF++  E+  K TG  +      +    D       A K
Sbjct:     9 ALPKFGEWDVNDPATADGFTVIFSKAGED--KKTGRSSTKTNSQRKQDGD-----KPAVK 61

Query:   228 KCCCF 232
             K  CF
Sbjct:    62 KWLCF 66

GO:0003674 "molecular_function" evidence=ND

GO:0010167 "response to nitrate" evidence=ISS

TAIR|locus:2101185 AT3G48450 "AT3G48450" [Arabidopsis thaliana (taxid:3702)]

 Score = 97 (39.2 bits), Expect = 0.00012, P = 0.00012
 Identities = 15/36 (41%), Positives = 26/36 (72%)

Query:   162 TTDHTAAVPEFGDWDEPDPTSADGYTYIFNQVREER 197
             T +    +P+FG+WD  +P SA+G+T IFN+ R+++
Sbjct:     3 TGNRARPLPKFGEWDATNPGSAEGFTVIFNKARDDK 38

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0010167 "response to nitrate" evidence=ISS

TAIR|locus:4010713927 AT4G35655 "AT4G35655" [Arabidopsis thaliana (taxid:3702)]

 Score = 97 (39.2 bits), Expect = 0.00012, P = 0.00012
 Identities = 18/52 (34%), Positives = 31/52 (59%)

Query:   169 VPEFGDWDEPDPTSADGYTYIFNQVREERLKGTGNVAAAATPGKPHYKDLKK 220
             +P+FG+WD  DP +A+G+T IF++  E++  G  +  A +   +   K  KK
Sbjct:    10 LPKFGEWDVNDPATAEGFTVIFSKAGEDKKTGRSSSKAPSQRKQDGVKPTKK 61

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:504955684 AT3G07195 "AT3G07195" [Arabidopsis thaliana (taxid:3702)]

 Score = 76 (31.8 bits), Expect = 0.00021, Sum P(2) = 0.00021
 Identities = 12/27 (44%), Positives = 19/27 (70%)

Query:    20 HVPKFGNWETEEHVPYSLYFDEARKRR 46
             HVPKFG+W  ++  P+++ FD AR  +
Sbjct:     6 HVPKFGDWNNQDQ-PFTVVFDNARTNK 31

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GYN5	RIN4_ARATH	No assigned EC number	0.3611	0.8432	0.9431	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	236
pfam05627	39	pfam05627, AvrRpt-cleavage, Cleavage site for path	8e-09

>gnl|CDD|203293 pfam05627, AvrRpt-cleavage, Cleavage site for pathogenic type III effector avirulence factor Avr

 Score = 49.9 bits (119), Expect = 8e-09
 Identities = 19/36 (52%), Positives = 28/36 (77%)

Query: 162 TTDHTAAVPEFGDWDEPDPTSADGYTYIFNQVREER 197
           T    +AVP+FG+WDE +P SA+G+T IFN+ R+E+
Sbjct: 1   TQVAGSAVPKFGEWDENNPASAEGFTVIFNKARDEK 36

This domain is conserved in small families of otherwise unrelated proteins in both mono-cots and di-cots, suggesting that it has a conserved, plant-specific function. It is found both in the plant RIN4 (resistance R membrane-bound host-target protein) where it appears to contribute to the binding of the protein to both RCS (AvrRpt2 auto-cleavage site) and AvrB, the virulence factor from the infecting bacterium. The cleavage site for the AvrRpt2 avirulence protein would appear to be the sequence motifs VPQFGDW and LPKFGEW, both of which are highly conserved within the domain. Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	236
PF05627	39	AvrRpt-cleavage: Cleavage site for pathogenic type	99.7
PF05627	39	AvrRpt-cleavage: Cleavage site for pathogenic type	99.21

>PF05627 AvrRpt-cleavage: Cleavage site for pathogenic type III effector avirulence factor Avr; InterPro: IPR008700 This domain is conserved in small families of otherwise unrelated proteins in both mono-cots and di-cots, suggesting that it has a conserved, plant-specific function

Probab=99.70  E-value=1.4e-18  Score=117.44  Aligned_cols=38  Identities=50%  Similarity=1.026  Sum_probs=13.9

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCceehhHHHHHHHhcC
Q 042337          163 TDHTAAVPEFGDWDEPDPTSADGYTYIFNQVREERLKG  200 (236)
Q Consensus       163 ~~~~~~vPkFG~WD~~np~s~~~yT~iF~k~reekk~~  200 (236)
                      ++++.+|||||+||++|++++++|||||+|||+||+++
T Consensus         2 ~~~~~~vPkFG~WD~~~~~~~~~yT~iF~kar~~Kk~~   39 (39)
T PF05627_consen    2 PQKGSHVPKFGEWDENNPASAEGYTVIFEKAREEKKTG   39 (39)
T ss_dssp             ----------SGGGTT-TT---SS-EEEE---------
T ss_pred             CcCCCCCCCCCcccCCCCCCCCCeeehHHHHhhhccCC
Confidence            46779999999999999999999999999999999974

It is found both in the plant RIN4 (resistance R membrane-bound host-target protein) where it appears to contribute to the binding of the protein to both RCS (AvrRpt2 auto-cleavage site) and AvrB, the virulence factor from the infecting bacterium []. The cleavage site for the AvrRpt2 avirulence protein would appear to be the sequence motifs VPQFGDW and LPKFGEW, both of which are highly conserved within the domain []. ; PDB: 2NUD_C.

>PF05627 AvrRpt-cleavage: Cleavage site for pathogenic type III effector avirulence factor Avr; InterPro: IPR008700 This domain is conserved in small families of otherwise unrelated proteins in both mono-cots and di-cots, suggesting that it has a conserved, plant-specific function

Probab=99.21  E-value=1.9e-12  Score=87.69  Aligned_cols=31  Identities=35%  Similarity=0.948  Sum_probs=11.9

Q ss_pred             CCCCCCCCCCCCCCcc---cchhhhHHHhhcccC
Q 042337           19 NHVPKFGNWETEEHVP---YSLYFDEARKRRNAA   49 (236)
Q Consensus        19 ~~vPkFG~w~~~~~~p---yT~~fe~ar~~k~~~   49 (236)
                      ++|||||+||.++..+   ||++|++||++|++|
T Consensus         6 ~~vPkFG~WD~~~~~~~~~yT~iF~kar~~Kk~~   39 (39)
T PF05627_consen    6 SHVPKFGEWDENNPASAEGYTVIFEKAREEKKTG   39 (39)
T ss_dssp             ------SGGGTT-TT---SS-EEEE---------
T ss_pred             CCCCCCCcccCCCCCCCCCeeehHHHHhhhccCC
Confidence            7999999999977666   999999999999864

It is found both in the plant RIN4 (resistance R membrane-bound host-target protein) where it appears to contribute to the binding of the protein to both RCS (AvrRpt2 auto-cleavage site) and AvrB, the virulence factor from the infecting bacterium []. The cleavage site for the AvrRpt2 avirulence protein would appear to be the sequence motifs VPQFGDW and LPKFGEW, both of which are highly conserved within the domain []. ; PDB: 2NUD_C.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	236
2nud_C	35	The Structure Of The Type Iii Effector Avrb Complex		3e-08

>pdb|2NUD|C Chain C, The Structure Of The Type Iii Effector Avrb Complexed With A High-Affinity Rin4 Peptide Length = 35

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 23/34 (67%), Positives = 29/34 (85%)
Query: 164 DHTAAVPEFGDWDEPDPTSADGYTYIFNQVREER 197
           +    VP+FGDWDE +P+SADGYT+IFN+VREER
Sbjct: 2   EKVTVVPKFGDWDENNPSSADGYTHIFNKVREER 35

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	236
2nud_C	35	RIN4, RPM1-interacting protein 4; AVRB RIN4 high-a	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>2nud_C RIN4, RPM1-interacting protein 4; AVRB RIN4 high-affinity toxin/protein binding complex; 2.30A {Pseudomonas syringae PV} Length = 35

 Score = 51.2 bits (122), Expect = 1e-09
 Identities = 23/34 (67%), Positives = 29/34 (85%)

Query: 164 DHTAAVPEFGDWDEPDPTSADGYTYIFNQVREER 197
           +    VP+FGDWDE +P+SADGYT+IFN+VREER
Sbjct: 2   EKVTVVPKFGDWDENNPSSADGYTHIFNKVREER 35

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 3e-04
 Identities = 47/281 (16%), Positives = 78/281 (27%), Gaps = 75/281 (26%)

Query: 8   FSISC--LFRQRYNHVPKFGNWETEEHVP-----YSLYFDEARK-------------RRN 47
           F++SC  L   R+  V  F +  T  H+       +L  DE +               R 
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321

Query: 48  AAKINP-------NDTHENQNTISDNLASIKTSTFETETKSGAQNGREDGDLRRPTESPW 100
               NP           +   T  DN   +      T  +S      E  + R+      
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATW-DNWKHVNCDKLTTIIESSLNV-LEPAEYRK-----M 374

Query: 101 YHH------TVNIEVAINSLVHRPGRKMTTRQQNAGFDSRIGRSPISPWRNYST----GC 150
           +        + +I   + SL+      +         +     S +      ST      
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWF---DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431

Query: 151 SQRRSVTQGAETTDHTAAV-----PEFGDWDEPDPTSADGYTY----------------- 188
                V    E   H + V     P+  D D+  P   D Y Y                 
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491

Query: 189 IFNQV----R--EERLKGTGNVAAAATPGKPHYKDLKKHKN 223
           +F  V    R  E++++       A+       + LK +K 
Sbjct: 492 LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP 532

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	236
2nud_C	35	RIN4, RPM1-interacting protein 4; AVRB RIN4 high-a	99.72
2nud_C	35	RIN4, RPM1-interacting protein 4; AVRB RIN4 high-a	98.51

>2nud_C RIN4, RPM1-interacting protein 4; AVRB RIN4 high-affinity toxin/protein binding complex; 2.30A {Pseudomonas syringae PV}

Probab=99.72  E-value=4.2e-19  Score=116.50  Aligned_cols=35  Identities=66%  Similarity=1.216  Sum_probs=22.9

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCceehhHHHHHHH
Q 042337          163 TDHTAAVPEFGDWDEPDPTSADGYTYIFNQVREER  197 (236)
Q Consensus       163 ~~~~~~vPkFG~WD~~np~s~~~yT~iF~k~reek  197 (236)
                      ++++++|||||+||++||+++++|||||+||||||
T Consensus         1 ~~~~~~vPkFG~WD~~n~~s~~~yT~iF~k~re~K   35 (35)
T 2nud_C            1 PEKVTVVPKFGDWDENNPSSADGYTHIFNKVREER   35 (35)
T ss_dssp             --------CCSGGGTTCTTCCCSSCEEEECC----
T ss_pred             CCCCCCCCCCCcccCCCCCCCCCEeehhhhhhhcC
Confidence            35789999999999999999999999999999997

>2nud_C RIN4, RPM1-interacting protein 4; AVRB RIN4 high-affinity toxin/protein binding complex; 2.30A {Pseudomonas syringae PV}

Probab=98.51  E-value=1.1e-08  Score=67.08  Aligned_cols=30  Identities=33%  Similarity=0.795  Sum_probs=16.9

Q ss_pred             cCCCCCCCCCCCCCC---CcccchhhhHHHhhc
Q 042337           17 RYNHVPKFGNWETEE---HVPYSLYFDEARKRR   46 (236)
Q Consensus        17 ~~~~vPkFG~w~~~~---~~pyT~~fe~ar~~k   46 (236)
                      +..+|||||+||..+   ...||.+|++||..|
T Consensus         3 ~~~~vPkFG~WD~~n~~s~~~yT~iF~k~re~K   35 (35)
T 2nud_C            3 KVTVVPKFGDWDENNPSSADGYTHIFNKVREER   35 (35)
T ss_dssp             ------CCSGGGTTCTTCCCSSCEEEECC----
T ss_pred             CCCCCCCCCcccCCCCCCCCCEeehhhhhhhcC
Confidence            337899999999743   247999999999876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00