Citrus Sinensis ID: 042351
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 716 | 2.2.26 [Sep-21-2011] | |||||||
| Q6S004 | 1030 | Kinesin-related protein 6 | yes | no | 0.490 | 0.340 | 0.540 | 1e-103 | |
| Q99661 | 725 | Kinesin-like protein KIF2 | yes | no | 0.505 | 0.499 | 0.517 | 1e-101 | |
| Q95LP1 | 671 | Kinesin-like protein KIF2 | N/A | no | 0.505 | 0.539 | 0.517 | 1e-101 | |
| Q922S8 | 721 | Kinesin-like protein KIF2 | yes | no | 0.497 | 0.493 | 0.515 | 1e-100 | |
| P70096 | 718 | Kinesin-like protein KIF2 | yes | no | 0.444 | 0.442 | 0.563 | 2e-99 | |
| Q5T7B8 | 1368 | Kinesin-like protein KIF2 | no | no | 0.479 | 0.250 | 0.521 | 6e-99 | |
| Q62909 | 671 | Kinesin-like protein KIF2 | yes | no | 0.444 | 0.473 | 0.563 | 7e-99 | |
| Q5ZKV8 | 706 | Kinesin-like protein KIF2 | no | no | 0.511 | 0.518 | 0.490 | 9e-96 | |
| Q6NWW5 | 1356 | Kinesin-like protein KIF2 | no | no | 0.448 | 0.236 | 0.534 | 1e-95 | |
| Q91636 | 730 | Kinesin-like protein KIF2 | N/A | no | 0.455 | 0.446 | 0.532 | 1e-95 |
| >sp|Q6S004|KIF6_DICDI Kinesin-related protein 6 OS=Dictyostelium discoideum GN=kif6 PE=2 SV=1 | Back alignment and function desciption |
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Score = 376 bits (965), Expect = e-103, Method: Compositional matrix adjust.
Identities = 201/372 (54%), Positives = 252/372 (67%), Gaps = 21/372 (5%)
Query: 150 KIKVVVRKRPLNKKEIAKKEEDIITIQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVLN 209
+I+V VRKRPLNKKEIAK E+DII + P + L V+E K K+DL++++E+H+F FD V +
Sbjct: 453 RIRVCVRKRPLNKKEIAKSEKDIIEVLPKKD-LIVNEPKTKLDLSKFIEKHKFTFDGVFD 511
Query: 210 EDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQP-----LPLKASHDILR 264
E N +VY T P+V IFH+ KATCFAYGQTGSGKT+T L A+ DI
Sbjct: 512 ESANNYQVYLHTAYPLVDSIFHKGKATCFAYGQTGSGKTHTQMGQQGDGLYALAARDIFH 571
Query: 265 LMHQMHRSQGFQLYVSFFEIYGGKVFDLLNDRKKLCMREDGKQQVCIVGLQEYRVSNVDT 324
+ + Q Q+ +SFFEIYGGK+FDLLN+RKKL RE+ Q V IVGL E V++
Sbjct: 572 RLETYFKDQ-LQVCISFFEIYGGKLFDLLNERKKLACRENELQNVVIVGLSEKHVTSPQE 630
Query: 325 IRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKPARLVGKLSFIDLAGS 384
+ I GN RSTG+TG N +SSRSHAILQ+++K + K +L GK SFIDLAGS
Sbjct: 631 LMNCIIDGNKIRSTGSTGVNSDSSRSHAILQISLK------NIKTNKLHGKFSFIDLAGS 684
Query: 385 ERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGDS 444
ERG+DT DNDKQTR EGA+INKSLLALKECIRALD H PFR S LT+VL+DSFVG+S
Sbjct: 685 ERGSDTYDNDKQTRKEGADINKSLLALKECIRALDQSSKHTPFRQSTLTQVLKDSFVGNS 744
Query: 445 RTVMISCISPSSGSCEHTINTLRYADRVKSLSKGNISKRDPLSSSSNLRDSTAFPVSSVV 504
RTVMI+ ISP+ S EHT+NTLRYADRVK L S+SN + + + + +
Sbjct: 745 RTVMIANISPNQSSSEHTLNTLRYADRVKELGTS--------ESNSNKKPVATYNIPAPL 796
Query: 505 PTKLTSEDNVND 516
P + N ND
Sbjct: 797 PPPDHLKQNFND 808
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Microtubule-associated force-producing protein that plays a role in organelle transport. Its motor activity is directed toward the microtubule's plus end. Dictyostelium discoideum (taxid: 44689) |
| >sp|Q99661|KIF2C_HUMAN Kinesin-like protein KIF2C OS=Homo sapiens GN=KIF2C PE=1 SV=2 | Back alignment and function description |
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| >sp|Q95LP1|KIF2C_MACFA Kinesin-like protein KIF2C OS=Macaca fascicularis GN=KIF2C PE=2 SV=1 | Back alignment and function description |
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| >sp|Q922S8|KIF2C_MOUSE Kinesin-like protein KIF2C OS=Mus musculus GN=Kif2c PE=1 SV=1 | Back alignment and function description |
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| >sp|P70096|KIF2C_CRIGR Kinesin-like protein KIF2C OS=Cricetulus griseus GN=KIF2C PE=1 SV=2 | Back alignment and function description |
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| >sp|Q5T7B8|KIF24_HUMAN Kinesin-like protein KIF24 OS=Homo sapiens GN=KIF24 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q62909|KIF2C_RAT Kinesin-like protein KIF2C OS=Rattus norvegicus GN=Kif2c PE=2 SV=3 | Back alignment and function description |
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| >sp|Q5ZKV8|KIF2A_CHICK Kinesin-like protein KIF2A OS=Gallus gallus GN=KIF2A PE=2 SV=2 | Back alignment and function description |
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| >sp|Q6NWW5|KIF24_MOUSE Kinesin-like protein KIF24 OS=Mus musculus GN=Kif24 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q91636|KIF2C_XENLA Kinesin-like protein KIF2C OS=Xenopus laevis GN=kif2c PE=1 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 716 | ||||||
| 297738831 | 740 | unnamed protein product [Vitis vinifera] | 0.987 | 0.955 | 0.764 | 0.0 | |
| 255546505 | 725 | kif4, putative [Ricinus communis] gi|223 | 0.986 | 0.973 | 0.772 | 0.0 | |
| 359484584 | 699 | PREDICTED: kinesin-like protein KIF2C-li | 0.934 | 0.957 | 0.730 | 0.0 | |
| 359484586 | 694 | PREDICTED: kinesin-like protein KIF2C-li | 0.927 | 0.956 | 0.727 | 0.0 | |
| 356520523 | 697 | PREDICTED: kinesin-like protein KIF2C-li | 0.948 | 0.974 | 0.714 | 0.0 | |
| 356529620 | 697 | PREDICTED: uncharacterized protein LOC10 | 0.948 | 0.974 | 0.711 | 0.0 | |
| 449465330 | 730 | PREDICTED: kinesin-like protein KIF2A-li | 0.988 | 0.969 | 0.697 | 0.0 | |
| 359482934 | 717 | PREDICTED: kinesin-like protein KIF2A-li | 0.927 | 0.926 | 0.646 | 0.0 | |
| 255550012 | 712 | kif4, putative [Ricinus communis] gi|223 | 0.909 | 0.914 | 0.662 | 0.0 | |
| 449524380 | 730 | PREDICTED: LOW QUALITY PROTEIN: kinesin- | 0.988 | 0.969 | 0.693 | 0.0 |
| >gi|297738831|emb|CBI28076.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1115 bits (2885), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 569/744 (76%), Positives = 640/744 (86%), Gaps = 37/744 (4%)
Query: 1 MNVVGRQVSRSNTAAHHQRQYSDNFLDSSFSSKWLQ---SSN-------DFGFYGGRTSR 50
MN VGRQV RS T AHH RQYSDNF+++S +++WLQ SSN +FG Y R R
Sbjct: 1 MNAVGRQVQRSGTTAHHHRQYSDNFIEASSNARWLQHLHSSNPTVPALQEFGLYSSRMGR 60
Query: 51 K--------SPDPTTPPVTSRSSSMRKNADDHVSPSELSPGLLDLHSFDTELLPEM---- 98
DP+TPP++SRSSS+RKNADD LSPGLLDLHSFDTELLPE+
Sbjct: 61 GVQRSASELGSDPSTPPLSSRSSSLRKNADD-----VLSPGLLDLHSFDTELLPEIPVPG 115
Query: 99 -----SFTRAPVLGKSFDDSEPYMSTSKLTNRIRGVPENSLLKSFSGDKERANNVAKIKV 153
SF R V GKSFDDSEPY++ +KL N+ RG+ +N+LLKSFS DKE+A+NVAKIKV
Sbjct: 116 LYDGPSF-RQHVYGKSFDDSEPYLTNNKLANKARGLSDNNLLKSFSVDKEKASNVAKIKV 174
Query: 154 VVRKRPLNKKEIAKKEEDIITIQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVLNEDVT 213
VVRKRPLNK+E++KKEEDII+I P+SNYLTVHETKLKVDLTEYVE+HEFVFDAVLNEDV+
Sbjct: 175 VVRKRPLNKREMSKKEEDIISIVPNSNYLTVHETKLKVDLTEYVEKHEFVFDAVLNEDVS 234
Query: 214 NEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQPLPLKASHDILRLMHQMHRSQ 273
N EVYSETVEPIVP+IF RTKATCFAYGQTGSGKTYTMQPLPLKAS DILRLMH +R+Q
Sbjct: 235 NNEVYSETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMQPLPLKASEDILRLMHNTYRNQ 294
Query: 274 GFQLYVSFFEIYGGKVFDLLNDRKKLCMREDGKQQVCIVGLQEYRVSNVDTIRELIEKGN 333
GFQL+VSFFEIYGGK+FDLLNDR+KLCMREDGKQQVCIVGLQEYRVSNV+TI++ IEKGN
Sbjct: 295 GFQLFVSFFEIYGGKLFDLLNDRRKLCMREDGKQQVCIVGLQEYRVSNVETIKDFIEKGN 354
Query: 334 ATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKPARLVGKLSFIDLAGSERGADTTDN 393
ATRSTGTTGANEESSRSHAILQLAIKRSADGS+SKPARLVGKLSFIDLAGSERGADTTDN
Sbjct: 355 ATRSTGTTGANEESSRSHAILQLAIKRSADGSESKPARLVGKLSFIDLAGSERGADTTDN 414
Query: 394 DKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGDSRTVMISCIS 453
DKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGDSRTVMISCIS
Sbjct: 415 DKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGDSRTVMISCIS 474
Query: 454 PSSGSCEHTINTLRYADRVKSLSKGNISKRDPLSSSSNLRDSTAFPVSSVVPTKLTSEDN 513
PSSGSCEHT+NTLRYADRVKSLSKGNISK+DPLSSS NLRDSTAFPVSS++PT EDN
Sbjct: 475 PSSGSCEHTLNTLRYADRVKSLSKGNISKKDPLSSSLNLRDSTAFPVSSLLPTASNIEDN 534
Query: 514 VNDVPHEKSRFGWAKQTEREPSPP-RVNRIPSGRAEGNL--APYPEYYKGQRGGQYDVTE 570
+ D+P+E +RFGW+KQ E+E SPP +V+R+PSGR EGN+ + Y +YYKGQRGGQ DVTE
Sbjct: 535 LPDIPNEINRFGWSKQIEKETSPPFKVDRVPSGRVEGNIPASSYSDYYKGQRGGQSDVTE 594
Query: 571 DDYDYSEETYEQEKTSWTNDAKLETYQMSASED-MRKIDAVKKRRDLSSFEANDSHSDDD 629
DD DYSEE Y QEK SW + K+ET Q+SA ED MRK ++ KRR+L FEAN+ DDD
Sbjct: 595 DDVDYSEEIYNQEKPSWIKNKKVETSQISALEDKMRKPESHIKRRELPDFEANNLRPDDD 654
Query: 630 LNALLKEEEDLVSAHRKQVEETMDVVREEMNLLVEADQPGNQLDIYICKLNALLSKKAAV 689
LNALLKEEEDLV+AHR+QVEETMD+VREEMNLLVEADQPGNQLD Y+ +LN +LS+KAA
Sbjct: 655 LNALLKEEEDLVNAHRRQVEETMDIVREEMNLLVEADQPGNQLDDYVSRLNTILSQKAAG 714
Query: 690 IVQLQTRLAQFQRHLNEYNVLASS 713
I+QLQTRLA FQR L++YNVL SS
Sbjct: 715 IMQLQTRLAHFQRRLHDYNVLVSS 738
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255546505|ref|XP_002514312.1| kif4, putative [Ricinus communis] gi|223546768|gb|EEF48266.1| kif4, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|359484584|ref|XP_002284512.2| PREDICTED: kinesin-like protein KIF2C-like isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|359484586|ref|XP_003633123.1| PREDICTED: kinesin-like protein KIF2C-like isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356520523|ref|XP_003528911.1| PREDICTED: kinesin-like protein KIF2C-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356529620|ref|XP_003533387.1| PREDICTED: uncharacterized protein LOC100775562 [Glycine max] | Back alignment and taxonomy information |
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| >gi|449465330|ref|XP_004150381.1| PREDICTED: kinesin-like protein KIF2A-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|359482934|ref|XP_002284593.2| PREDICTED: kinesin-like protein KIF2A-like [Vitis vinifera] gi|297743274|emb|CBI36141.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|255550012|ref|XP_002516057.1| kif4, putative [Ricinus communis] gi|223544962|gb|EEF46477.1| kif4, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|449524380|ref|XP_004169201.1| PREDICTED: LOW QUALITY PROTEIN: kinesin-like protein KIF2A-like [Cucumis sativus] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 716 | ||||||
| TAIR|locus:2093382 | 684 | AT3G16060 [Arabidopsis thalian | 0.634 | 0.663 | 0.702 | 1.7e-216 | |
| TAIR|locus:2089358 | 794 | KINESIN-13A [Arabidopsis thali | 0.803 | 0.724 | 0.492 | 1.2e-134 | |
| DICTYBASE|DDB_G0267404 | 1030 | kif6 "kinesin family member 6" | 0.460 | 0.320 | 0.543 | 5.5e-95 | |
| UNIPROTKB|P70096 | 718 | KIF2C "Kinesin-like protein KI | 0.493 | 0.491 | 0.503 | 3.3e-89 | |
| UNIPROTKB|E2RC91 | 1365 | KIF24 "Uncharacterized protein | 0.634 | 0.332 | 0.444 | 1.9e-88 | |
| RGD|70974 | 705 | Kif2a "kinesin heavy chain mem | 0.515 | 0.523 | 0.473 | 2.1e-88 | |
| UNIPROTKB|Q9WV63 | 705 | Kif2a "Kinesin-like protein KI | 0.515 | 0.523 | 0.473 | 2.1e-88 | |
| UNIPROTKB|F1NAZ3 | 679 | KIF2A "Kinesin-like protein KI | 0.511 | 0.539 | 0.477 | 2.7e-88 | |
| UNIPROTKB|Q5ZKV8 | 706 | KIF2A "Kinesin-like protein KI | 0.511 | 0.518 | 0.477 | 2.7e-88 | |
| UNIPROTKB|Q91636 | 730 | kif2c "Kinesin-like protein KI | 0.519 | 0.509 | 0.467 | 6e-88 |
| TAIR|locus:2093382 AT3G16060 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1653 (586.9 bits), Expect = 1.7e-216, Sum P(3) = 1.7e-216
Identities = 342/487 (70%), Positives = 388/487 (79%)
Query: 68 RKNADDHVSPSELSPGLLDLHSFDTELLPEMSFTRA--------PVLGKSFDDSEPYMST 119
RKN D+ SE SPGLLDLHSFDTELLPE+ + P G+SFDD E Y
Sbjct: 91 RKNNDE----SEFSPGLLDLHSFDTELLPEIPVSNQLDGPSLFNPSQGQSFDDFEAY--- 143
Query: 120 SKLTNRIRGVPENSLLKSFSGDKERANNVAKIKVVVRKRPLNXXXXXXXXXXXXXXQPHS 179
+K NR R + EN + +KER N VAKIKVVVRKRPLN H+
Sbjct: 144 NKQPNRSRVLAEN-----LAAEKERMNAVAKIKVVVRKRPLNKKESTKNEEDIVDT--HA 196
Query: 180 NYLTVHETKLKVDLTEYVERHEFVFDAVLNEDVTNEEVYSETVEPIVPLIFHRTKATCFA 239
N LTVHETKLKVDLT YVE+HEFVFDAVL+E+V+N+EVY ETVEP+VPLIF R KATCFA
Sbjct: 197 NCLTVHETKLKVDLTAYVEKHEFVFDAVLDEEVSNDEVYRETVEPVVPLIFQRIKATCFA 256
Query: 240 YGQTGSGKTYTMQPLPLKASHDILRLMHQMHRSQGFQLYVSFFEIYGGKVFDLLNDRKKL 299
YGQTGSGKTYTM+PLPLKAS DILRLMH +R+QGFQL+VSFFEIYGGK++DLL++RKKL
Sbjct: 257 YGQTGSGKTYTMKPLPLKASRDILRLMHHTYRNQGFQLFVSFFEIYGGKLYDLLSERKKL 316
Query: 300 CMREDGKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIK 359
CMREDGKQQVCIVGLQEYRVS+ D I ELIE+G+ATRSTGTTGANEESSRSHAILQLAIK
Sbjct: 317 CMREDGKQQVCIVGLQEYRVSDTDAIMELIERGSATRSTGTTGANEESSRSHAILQLAIK 376
Query: 360 RSADGSDSKPARLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALD 419
+S +G+ SKP RLVGKLSFIDLAGSERGADTTDNDKQTR+EGAEINKSLLALKECIRALD
Sbjct: 377 KSVEGNQSKPPRLVGKLSFIDLAGSERGADTTDNDKQTRLEGAEINKSLLALKECIRALD 436
Query: 420 NDQGHIPFRGSKLTEVLRDSFVGDSRTVMISCISPSSGSCEHTINTLRYADRVKSLSKGN 479
NDQGHIPFRGSKLTEVLRDSF+G+SRTVMISCISPSSGSCEHT+NTLRYADRVKSLSKGN
Sbjct: 437 NDQGHIPFRGSKLTEVLRDSFMGNSRTVMISCISPSSGSCEHTLNTLRYADRVKSLSKGN 496
Query: 480 ISKRDPLSSSSNLRDSTAFPVSSVVPTKLTSEDNVNDV-----------PHEKSRFGWAK 528
SK+D SS+ NLR+ST P+SS +PT +D+VN++ +E+ + W K
Sbjct: 497 ASKKDVSSSTMNLRESTKIPLSSALPTPSNFDDDVNEMWTEENDEFDASDYEQDKQMWKK 556
Query: 529 QTEREPS 535
+ EPS
Sbjct: 557 NGKLEPS 563
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| TAIR|locus:2089358 KINESIN-13A [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| DICTYBASE|DDB_G0267404 kif6 "kinesin family member 6" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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| UNIPROTKB|P70096 KIF2C "Kinesin-like protein KIF2C" [Cricetulus griseus (taxid:10029)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2RC91 KIF24 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| RGD|70974 Kif2a "kinesin heavy chain member 2A" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q9WV63 Kif2a "Kinesin-like protein KIF2A" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1NAZ3 KIF2A "Kinesin-like protein KIF2A" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q5ZKV8 KIF2A "Kinesin-like protein KIF2A" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q91636 kif2c "Kinesin-like protein KIF2C" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | estExt_Genewise1_v1.C_LG_III1820 | hypothetical protein (690 aa) | ||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 716 | |||
| cd01367 | 322 | cd01367, KISc_KIF2_like, Kinesin motor domain, KIF | 0.0 | |
| pfam00225 | 326 | pfam00225, Kinesin, Kinesin motor domain | 1e-127 | |
| smart00129 | 335 | smart00129, KISc, Kinesin motor, catalytic domain | 1e-112 | |
| cd00106 | 328 | cd00106, KISc, Kinesin motor domain | 1e-109 | |
| cd01370 | 338 | cd01370, KISc_KIP3_like, Kinesin motor domain, KIP | 1e-91 | |
| cd01374 | 321 | cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E | 5e-82 | |
| cd01372 | 341 | cd01372, KISc_KIF4, Kinesin motor domain, KIF4-lik | 2e-81 | |
| cd01366 | 329 | cd01366, KISc_C_terminal, Kinesin motor domain, KI | 3e-78 | |
| cd01371 | 333 | cd01371, KISc_KIF3, Kinesin motor domain, kinesins | 5e-78 | |
| cd01369 | 325 | cd01369, KISc_KHC_KIF5, Kinesin motor domain, kine | 4e-74 | |
| cd01365 | 356 | cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, K | 4e-68 | |
| cd01364 | 352 | cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC | 3e-63 | |
| cd01376 | 319 | cd01376, KISc_KID_like, Kinesin motor domain, KIF2 | 9e-60 | |
| cd01368 | 345 | cd01368, KISc_KIF23_like, Kinesin motor domain, KI | 6e-58 | |
| COG5059 | 568 | COG5059, KIP1, Kinesin-like protein [Cytoskeleton] | 1e-57 | |
| cd01375 | 334 | cd01375, KISc_KIF9_like, Kinesin motor domain, KIF | 8e-53 | |
| cd01373 | 337 | cd01373, KISc_KLP2_like, Kinesin motor domain, KLP | 9e-50 | |
| PLN03188 | 1320 | PLN03188, PLN03188, kinesin-12 family protein; Pro | 3e-38 | |
| cd01363 | 186 | cd01363, Motor_domain, Myosin and Kinesin motor do | 2e-29 | |
| cd01363 | 186 | cd01363, Motor_domain, Myosin and Kinesin motor do | 0.002 |
| >gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group | Back alignment and domain information |
|---|
Score = 522 bits (1347), Expect = 0.0
Identities = 206/330 (62%), Positives = 257/330 (77%), Gaps = 15/330 (4%)
Query: 150 KIKVVVRKRPLNKKEIAKKEEDIITIQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVLN 209
KI V VRKRPLN KE++K E D+++ + + +TVHE K KVDLT+Y+E+H F FD V +
Sbjct: 2 KITVAVRKRPLNDKELSKGETDVVSCESN-PTVTVHEPKTKVDLTKYIEKHTFRFDYVFD 60
Query: 210 EDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQ------PLPLKASHDIL 263
E VTNEEVY TV+P++P +F ATCFAYGQTGSGKTYTM L A+ DI
Sbjct: 61 EAVTNEEVYRSTVKPLIPHVFEGGVATCFAYGQTGSGKTYTMLGDENQEGLYALAARDIF 120
Query: 264 RLMHQMHRSQGFQLYVSFFEIYGGKVFDLLNDRKKLCMREDGKQQVCIVGLQEYRVSNVD 323
RL+ Q + + VSFFEIYGGK+FDLLNDRK+L + EDGK V IVGL E V++VD
Sbjct: 121 RLLAQP--NDDLGVTVSFFEIYGGKLFDLLNDRKRLSVLEDGKGNVQIVGLTEKPVTSVD 178
Query: 324 TIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKPARLVGKLSFIDLAG 383
+ ELIE GN+ R+TG+TGAN++SSRSHAILQ+ +K + K +L+GKLSFIDLAG
Sbjct: 179 ELLELIESGNSLRTTGSTGANDQSSRSHAILQIILK------NKKLNKLLGKLSFIDLAG 232
Query: 384 SERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGD 443
SERGADT+++D+QTR EGAEINKSLLALKECIRAL +++ H+PFRGSKLT+VLRDSF+G+
Sbjct: 233 SERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNKAHVPFRGSKLTQVLRDSFIGN 292
Query: 444 SRTVMISCISPSSGSCEHTINTLRYADRVK 473
S+TVMI+ ISPS+ SCEHT+NTLRYADRVK
Sbjct: 293 SKTVMIATISPSASSCEHTLNTLRYADRVK 322
|
KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 322 |
| >gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|238054 cd00106, KISc, Kinesin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis | Back alignment and domain information |
|---|
| >gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins | Back alignment and domain information |
|---|
| >gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like proteins | Back alignment and domain information |
|---|
| >gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like proteins | Back alignment and domain information |
|---|
| >gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division | Back alignment and domain information |
|---|
| >gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling | Back alignment and domain information |
|---|
| >gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 716 | |||
| KOG0246 | 676 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG4280 | 574 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0243 | 1041 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd01370 | 338 | KISc_KIP3_like Kinesin motor domain, KIP3-like sub | 100.0 | |
| KOG0245 | 1221 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd01367 | 322 | KISc_KIF2_like Kinesin motor domain, KIF2-like gro | 100.0 | |
| cd01373 | 337 | KISc_KLP2_like Kinesin motor domain, KLP2-like sub | 100.0 | |
| cd01368 | 345 | KISc_KIF23_like Kinesin motor domain, KIF23-like s | 100.0 | |
| KOG0240 | 607 | consensus Kinesin (SMY1 subfamily) [Cytoskeleton] | 100.0 | |
| PLN03188 | 1320 | kinesin-12 family protein; Provisional | 100.0 | |
| cd01365 | 356 | KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like p | 100.0 | |
| cd01364 | 352 | KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spind | 100.0 | |
| cd01371 | 333 | KISc_KIF3 Kinesin motor domain, kinesins II or KIF | 100.0 | |
| KOG0242 | 675 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd01374 | 321 | KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like | 100.0 | |
| cd01372 | 341 | KISc_KIF4 Kinesin motor domain, KIF4-like subfamil | 100.0 | |
| cd01375 | 334 | KISc_KIF9_like Kinesin motor domain, KIF9-like sub | 100.0 | |
| cd01369 | 325 | KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy | 100.0 | |
| cd01376 | 319 | KISc_KID_like Kinesin motor domain, KIF22/Kid-like | 100.0 | |
| KOG0241 | 1714 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd01366 | 329 | KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ | 100.0 | |
| cd00106 | 328 | KISc Kinesin motor domain. This catalytic (head) d | 100.0 | |
| smart00129 | 335 | KISc Kinesin motor, catalytic domain. ATPase. Micr | 100.0 | |
| KOG0239 | 670 | consensus Kinesin (KAR3 subfamily) [Cytoskeleton] | 100.0 | |
| PF00225 | 335 | Kinesin: Kinesin motor domain; InterPro: IPR001752 | 100.0 | |
| KOG0247 | 809 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0244 | 913 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| COG5059 | 568 | KIP1 Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd01363 | 186 | Motor_domain Myosin and Kinesin motor domain. Thes | 100.0 | |
| COG5059 | 568 | KIP1 Kinesin-like protein [Cytoskeleton] | 97.32 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 95.85 | |
| KOG0246 | 676 | consensus Kinesin-like protein [Cytoskeleton] | 93.02 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 90.58 | |
| COG2805 | 353 | PilT Tfp pilus assembly protein, pilus retraction | 89.62 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 87.51 | |
| PRK06620 | 214 | hypothetical protein; Validated | 87.31 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 86.36 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 84.27 | |
| PRK12377 | 248 | putative replication protein; Provisional | 83.9 | |
| PRK08116 | 268 | hypothetical protein; Validated | 83.31 | |
| PRK09087 | 226 | hypothetical protein; Validated | 83.18 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 82.4 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 82.07 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 81.18 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 81.08 | |
| COG2804 | 500 | PulE Type II secretory pathway, ATPase PulE/Tfp pi | 80.86 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 80.79 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 80.73 | |
| PRK06526 | 254 | transposase; Provisional | 80.63 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 80.58 |
| >KOG0246 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-98 Score=812.17 Aligned_cols=455 Identities=49% Similarity=0.737 Sum_probs=392.6
Q ss_pred CCCCCCeEEEEEeCCCCchhhhcCCCCeEEEeCCCCEEEEccccccccccccccceEEEeceecCCCCCcHHhhhhcchh
Q 042351 145 ANNVAKIKVVVRKRPLNKKEIAKKEEDIITIQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVLNEDVTNEEVYSETVEP 224 (716)
Q Consensus 145 ~~~~~~IkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~~k~~vd~t~~~~~~~F~FD~VFd~~asQeeVy~~~v~p 224 (716)
....++|+||||+||++++|...++.++|++ |..+.++||+|+.+||++.|++++.|+||++||+.++|++||+.+++|
T Consensus 204 ~v~ehrI~VCVRKRPLnkkE~~~keiDvisv-ps~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa~P 282 (676)
T KOG0246|consen 204 GVNEHRICVCVRKRPLNKKELTKKEIDVISV-PSKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESASNELVYRFTAKP 282 (676)
T ss_pred CCccceEEEEeecCCCCchhccccccceEec-cccceEEeeccccccchHHHHhhceEEEeeecccccchHHHHHHhhhH
Confidence 4667899999999999999999999999999 689999999999999999999999999999999999999999999999
Q ss_pred hHHHHhcCCCccEEEeCCCCCCCccccC------------CCCccchHHHHHHHhh-hccccceeeEEEEEEEecCeeee
Q 042351 225 IVPLIFHRTKATCFAYGQTGSGKTYTMQ------------PLPLKASHDILRLMHQ-MHRSQGFQLYVSFFEIYGGKVFD 291 (716)
Q Consensus 225 LV~~vl~G~N~tifAYGqTGSGKTyTm~------------Gl~~~a~~~if~~i~~-~~~~~~~~V~vS~~EIYne~v~D 291 (716)
||+.+|+|..+||||||||||||||||. |++..+.+++|.++.+ .+...++.|++||||||+++|||
T Consensus 283 lV~~IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfD 362 (676)
T KOG0246|consen 283 LVKTIFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYD 362 (676)
T ss_pred HHHHHHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhh
Confidence 9999999999999999999999999994 5788899999999998 78889999999999999999999
Q ss_pred cCCCCCcceeEecCCCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCCCce
Q 042351 292 LLNDRKKLCMREDGKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKPAR 371 (716)
Q Consensus 292 LL~~~~~l~ired~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~ 371 (716)
||+++++|+++||++++|+|.||+|..|.+++|++++|+.|+..|+++.|.+|..|||||+||+|.++... ..+
T Consensus 363 LL~~k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~~------~~k 436 (676)
T KOG0246|consen 363 LLNDKKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKHG------EFK 436 (676)
T ss_pred hhccccceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecCC------cce
Confidence 99999999999999999999999999999999999999999999999999999999999999999998652 247
Q ss_pred eEEEEEEEeCCCCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhCCCCCCcCCCChhhHhhhhhcCC-CceEEEEE
Q 042351 372 LVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVG-DSRTVMIS 450 (716)
Q Consensus 372 ~~skL~fVDLAGSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~~~~hVPyRdSKLT~LLqdsLgG-nskT~mIa 450 (716)
++||++||||||+||++++.++++++|+||+.|||||+||++||+||.+++.|+|||.||||++|||||.| ||+||||+
T Consensus 437 ~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk~H~PFR~SKLTqVLRDSFIGenSrTcMIA 516 (676)
T KOG0246|consen 437 LHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKSHLPFRGSKLTQVLRDSFIGENSRTCMIA 516 (676)
T ss_pred eEeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhHHHHHHHhhcCCCCceEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHHhcccccCCcc-cCCCCCcccccccCccccccccCCCCCCcCCCCCCCCccccccCcccc
Q 042351 451 CISPSSGSCEHTINTLRYADRVKSLSKGNIS-KRDPLSSSSNLRDSTAFPVSSVVPTKLTSEDNVNDVPHEKSRFGWAKQ 529 (716)
Q Consensus 451 ~ISP~~~~~eeTlsTLrfA~R~k~I~~~~~~-~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (716)
||||+..+||+||||||||+|+|++...... ...|. ......|.+ +... +
T Consensus 517 ~ISPg~~ScEhTLNTLRYAdRVKeLsv~~~~~~~~~~------~~~~~~p~~----------~~~s-------------~ 567 (676)
T KOG0246|consen 517 TISPGISSCEHTLNTLRYADRVKELSVDGGPSGRMPR------AIGEETPNS----------DPES-------------N 567 (676)
T ss_pred EeCCCcchhhhhHHHHHHHHHHHhhcCCCCccccCcc------cccCCCccc----------cchh-------------c
Confidence 9999999999999999999999999765432 11110 000000000 0000 0
Q ss_pred ccCCCCCCCCCCCCCCccCCCCCCCCCcccCcCCCcccccccccCCCchhhhhccccccccccccccccchhhhhhhhhh
Q 042351 530 TEREPSPPRVNRIPSGRAEGNLAPYPEYYKGQRGGQYDVTEDDYDYSEETYEQEKTSWTNDAKLETYQMSASEDMRKIDA 609 (716)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (716)
....++.| ..++ +...
T Consensus 568 ~~~~~~~~-------------------------------~~~~-~~~~-------------------------------- 583 (676)
T KOG0246|consen 568 SETQPLNP-------------------------------SRDE-EPSS-------------------------------- 583 (676)
T ss_pred cccCCCCc-------------------------------cccc-cccc--------------------------------
Confidence 00000000 0000 0000
Q ss_pred hhhcccccccccCCCCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHH
Q 042351 610 VKKRRDLSSFEANDSHSDDDLNALLKEEEDLVSAHRKQVEETMDVVREEMNLLVEADQPGNQLDIYICKLNALLSKKAAV 689 (716)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~e~I~~ILeEEE~LIaaHR~~IeetmeivkEEm~LL~~vdqpg~diD~Yvt~L~~ILs~K~~~ 689 (716)
+.. .....+..+-+.++.++..++.-+...+.|++-+..+..+.+.|.+|++.|+.+.+.+|+|+++.
T Consensus 584 ----------e~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~k~~s~l~q~~~~ 651 (676)
T KOG0246|consen 584 ----------EPN--EENSEREEASEHREVLVKEVRNSLNRSEKWIRLDRPIQSKTESVSSDMPIVAHKAESDLEQEEDL 651 (676)
T ss_pred ----------Ccc--ccccchhhhhhhHHHHHhhhccccccccccccccchhhhcccccccCcchhHHHhHHHHHHHHHH
Confidence 000 00112233345678899999999999999999887777888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q 042351 690 IVQLQTRLAQFQRHLNEYNVLA 711 (716)
Q Consensus 690 I~~Lq~rL~~F~~~L~eeE~ls 711 (716)
+..+|..+..+...+.+|+-++
T Consensus 652 ~~~~~~~~~~~~~~~~~e~~~~ 673 (676)
T KOG0246|consen 652 LAALRKEVKDTLNTVLAEEKVL 673 (676)
T ss_pred HHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999988775
|
|
| >KOG4280 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0243 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup | Back alignment and domain information |
|---|
| >KOG0245 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group | Back alignment and domain information |
|---|
| >cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup | Back alignment and domain information |
|---|
| >cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup | Back alignment and domain information |
|---|
| >KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton] | Back alignment and domain information |
|---|
| >PLN03188 kinesin-12 family protein; Provisional | Back alignment and domain information |
|---|
| >cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins | Back alignment and domain information |
|---|
| >cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division | Back alignment and domain information |
|---|
| >cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins | Back alignment and domain information |
|---|
| >KOG0242 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis | Back alignment and domain information |
|---|
| >cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily | Back alignment and domain information |
|---|
| >cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling | Back alignment and domain information |
|---|
| >cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup | Back alignment and domain information |
|---|
| >cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup | Back alignment and domain information |
|---|
| >KOG0241 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins | Back alignment and domain information |
|---|
| >cd00106 KISc Kinesin motor domain | Back alignment and domain information |
|---|
| >smart00129 KISc Kinesin motor, catalytic domain | Back alignment and domain information |
|---|
| >KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport | Back alignment and domain information |
|---|
| >KOG0247 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0244 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >COG5059 KIP1 Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01363 Motor_domain Myosin and Kinesin motor domain | Back alignment and domain information |
|---|
| >COG5059 KIP1 Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG0246 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
| >COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
| >PRK06620 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK09087 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 716 | ||||
| 2heh_A | 387 | Crystal Structure Of The Kif2c Motor Domain (Casp T | 6e-94 | ||
| 1v8j_A | 410 | The Crystal Structure Of The Minimal Functional Dom | 1e-93 | ||
| 3edl_D | 331 | Kinesin13-Microtubule Ring Complex Length = 331 | 4e-93 | ||
| 2gry_A | 420 | Crystal Structure Of The Human Kif2 Motor Domain In | 1e-89 | ||
| 1ry6_A | 360 | Crystal Structure Of Internal Kinesin Motor Domain | 2e-76 | ||
| 2xt3_A | 344 | Human Kif7, A Kinesin Involved In Hedgehog Signalli | 2e-47 | ||
| 4aqv_C | 373 | Model Of Human Kinesin-5 Motor Domain (3hqd) And Ma | 2e-47 | ||
| 4a14_A | 344 | Human Kif7, A Kinesin Involved In Hedgehog Signalli | 2e-47 | ||
| 3b6u_A | 372 | Crystal Structure Of The Motor Domain Of Human Kine | 5e-47 | ||
| 2vvg_A | 350 | Crystal Structure Of The G.Intestinalis Kinesin 2 G | 5e-47 | ||
| 4a1z_A | 368 | Eg5-1 Length = 368 | 1e-46 | ||
| 1q0b_A | 367 | Crystal Structure Of The Motor Protein Ksp In Compl | 3e-46 | ||
| 1ii6_A | 368 | Crystal Structure Of The Mitotic Kinesin Eg5 In Com | 4e-46 | ||
| 4ap0_A | 370 | The Mitotic Kinesin Eg5 In Complex With Mg-Adp And | 4e-46 | ||
| 3hqd_A | 369 | Human Kinesin Eg5 Motor Domain In Complex With Ampp | 4e-46 | ||
| 4a28_A | 368 | Eg5-2 Length = 368 | 5e-46 | ||
| 1x88_A | 359 | Human Eg5 Motor Domain Bound To Mg-Adp And Monastro | 6e-46 | ||
| 3zcw_A | 348 | Eg5 - New Allosteric Binding Site Length = 348 | 7e-46 | ||
| 3lre_A | 355 | Crystal Structure Analysis Of Human Kinesin-8 Motor | 2e-45 | ||
| 3b6v_A | 395 | Crystal Structure Of The Motor Domain Of Human Kine | 4e-44 | ||
| 2y5w_A | 365 | Crystal Structure Of Drosophila Melanogaster Kinesi | 9e-41 | ||
| 2h58_A | 330 | Crystal Structure Of The Kifc3 Motor Domain In Comp | 2e-40 | ||
| 1bg2_A | 325 | Human Ubiquitous Kinesin Motor Domain Length = 325 | 2e-40 | ||
| 1mkj_A | 349 | Human Kinesin Motor Domain With Docked Neck Linker | 2e-40 | ||
| 3gbj_A | 354 | Crystal Structure Of The Motor Domain Of Kinesin Ki | 4e-40 | ||
| 2wbe_C | 373 | Kinesin-5-Tubulin Complex With Amppnp Length = 373 | 5e-40 | ||
| 4atx_C | 340 | Rigor Kinesin Motor Domain With An Ordered Neck-Lin | 6e-40 | ||
| 1goj_A | 355 | Structure Of A Fast Kinesin: Implications For Atpas | 6e-38 | ||
| 3h4s_A | 386 | Structure Of The Complex Of A Mitotic Kinesin With | 2e-37 | ||
| 1sdm_A | 369 | Crystal Structure Of Kinesin-Like Calmodulin Bindin | 1e-36 | ||
| 1i5s_A | 367 | Crystal Structure Of The Kif1a Motor Domain Complex | 2e-36 | ||
| 1i6i_A | 366 | Crystal Structure Of The Kif1a Motor Domain Complex | 2e-36 | ||
| 1ia0_K | 394 | Kif1a Head-Microtubule Complex Structure In Atp-For | 2e-36 | ||
| 1t5c_A | 349 | Crystal Structure Of The Motor Domain Of Human Kine | 2e-36 | ||
| 1vfv_A | 366 | Crystal Structure Of The Kif1a Motor Domain Complex | 3e-36 | ||
| 4gkr_A | 371 | Structure Of The C-Terminal Motor Domain Of Kar3 Fr | 6e-36 | ||
| 4etp_A | 403 | C-Terminal Motor And Motor Homology Domain Of Kar3v | 1e-35 | ||
| 3t0q_A | 349 | Motor Domain Structure Of The Kar3-Like Kinesin Fro | 8e-35 | ||
| 3kar_A | 346 | The Motor Domain Of Kinesin-Like Protein Kar3, A Sa | 4e-34 | ||
| 1f9t_A | 358 | Crystal Structures Of Kinesin Mutants Reveal A Sign | 5e-34 | ||
| 3u06_A | 412 | Crystal Structure Of The Kinesin-14 Ncdg347d Length | 9e-34 | ||
| 1cz7_A | 406 | The Crystal Structure Of A Minus-End Directed Micro | 9e-34 | ||
| 2ncd_A | 420 | Ncd (Non-Claret Disjunctional) Dimer From D. Melano | 1e-33 | ||
| 1f9w_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 2e-33 | ||
| 1f9v_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 3e-33 | ||
| 1f9u_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 3e-33 | ||
| 3l1c_A | 383 | Kinesin-14 Protein Ncd, T436s Mutant Length = 383 | 4e-33 | ||
| 1n6m_A | 409 | Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRY | 5e-33 | ||
| 3bfn_A | 388 | Crystal Structure Of The Motor Domain Of Human Kine | 7e-33 | ||
| 3pxn_A | 344 | Crystal Structure Of The Drosophila Kinesin Family | 7e-31 | ||
| 3dc4_A | 344 | Crystal Structure Of The Drosophila Kinesin Family | 1e-30 | ||
| 4h1g_A | 715 | Structure Of Candida Albicans Kar3 Motor Domain Fus | 5e-30 | ||
| 2owm_A | 443 | Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3 | 1e-29 | ||
| 3nwn_A | 359 | Crystal Structure Of The Human Kif9 Motor Domain In | 6e-28 | ||
| 2rep_A | 376 | Crystal Structure Of The Motor Domain Of Human Kine | 2e-27 | ||
| 2kin_A | 238 | Kinesin (Monomeric) From Rattus Norvegicus Length = | 3e-26 | ||
| 2kin_B | 100 | Kinesin (Monomeric) From Rattus Norvegicus Length = | 9e-09 | ||
| 3kin_B | 117 | Kinesin (Dimeric) From Rattus Norvegicus Length = 1 | 2e-08 |
| >pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target) Length = 387 | Back alignment and structure |
|
| >pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of The Microtubule Destabilizer Kif2c Complexed With Mg-adp Length = 410 | Back alignment and structure |
| >pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex Length = 331 | Back alignment and structure |
| >pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In Complex With Adp Length = 420 | Back alignment and structure |
| >pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain Length = 360 | Back alignment and structure |
| >pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344 | Back alignment and structure |
| >pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain In The Ampppnp State. Length = 373 | Back alignment and structure |
| >pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344 | Back alignment and structure |
| >pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3b In Complex With Adp Length = 372 | Back alignment and structure |
| >pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a Motor Domain Length = 350 | Back alignment and structure |
| >pdb|4A1Z|A Chain A, Eg5-1 Length = 368 | Back alignment and structure |
| >pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With Adp And Monastrol Length = 367 | Back alignment and structure |
| >pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex With Mg-Adp. Length = 368 | Back alignment and structure |
| >pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And Ispinesib Length = 370 | Back alignment and structure |
| >pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And Mg2+ Length = 369 | Back alignment and structure |
| >pdb|4A28|A Chain A, Eg5-2 Length = 368 | Back alignment and structure |
| >pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol Length = 359 | Back alignment and structure |
| >pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site Length = 348 | Back alignment and structure |
| >pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain Length = 355 | Back alignment and structure |
| >pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3c In Complex With Adp Length = 395 | Back alignment and structure |
| >pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1 Motor Domain Dimer Length = 365 | Back alignment and structure |
| >pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex With Adp Length = 330 | Back alignment and structure |
| >pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain Length = 325 | Back alignment and structure |
| >pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker Length = 349 | Back alignment and structure |
| >pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b Bound With Adp Length = 354 | Back alignment and structure |
| >pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp Length = 373 | Back alignment and structure |
| >pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker, Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em Map Of Doublecortin-Microtubules Decorated With Kinesin Length = 340 | Back alignment and structure |
| >pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase Mechanism And Interactions With Microtubules Length = 355 | Back alignment and structure |
| >pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its Calcium Binding Regulator Length = 386 | Back alignment and structure |
| >pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding Protein Length = 369 | Back alignment and structure |
| >pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Adp Length = 367 | Back alignment and structure |
| >pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppcp Length = 366 | Back alignment and structure |
| >pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form Length = 394 | Back alignment and structure |
| >pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore Protein Cenp-E Length = 349 | Back alignment and structure |
| >pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppnp Length = 366 | Back alignment and structure |
| >pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From Candida Glabrata Length = 371 | Back alignment and structure |
| >pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1 Fused To A Synthetic Heterodimeric Coiled Coil Length = 403 | Back alignment and structure |
| >pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From Ashbya Gossypii Length = 349 | Back alignment and structure |
| >pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A Saccharomyces Cerevisiae Kinesin-Related Protein Length = 346 | Back alignment and structure |
| >pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling Pathway For Activation Of The Motor Atpase Length = 358 | Back alignment and structure |
| >pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d Length = 412 | Back alignment and structure |
| >pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule Motor Protein Ncd Reveals Variable Dimer Conformations Length = 406 | Back alignment and structure |
| >pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster Length = 420 | Back alignment and structure |
| >pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant Length = 383 | Back alignment and structure |
| >pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL Structure Of The Kinesin Motor Protein, Ncd Length = 409 | Back alignment and structure |
| >pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 22 Length = 388 | Back alignment and structure |
| >pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Kin10NOD IN Complex With Divalent Manganese And Adp Length = 344 | Back alignment and structure |
| >pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Nod In Complex With Adp Length = 344 | Back alignment and structure |
| >pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To Maltose- Binding Protein Length = 715 | Back alignment and structure |
| >pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3) Length = 443 | Back alignment and structure |
| >pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In Complex With Adp Length = 359 | Back alignment and structure |
| >pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member C1 Length = 376 | Back alignment and structure |
| >pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus Length = 238 | Back alignment and structure |
| >pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus Length = 100 | Back alignment and structure |
| >pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus Length = 117 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 Length = 360 | Back alignment and structure |
|---|
Score = 507 bits (1309), Expect = e-176
Identities = 158/359 (44%), Positives = 225/359 (62%), Gaps = 19/359 (5%)
Query: 151 IKVVVRKRPLNKKEIAKKEEDIITIQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVLNE 210
IKVVVRKRPL++ E KK+ DIIT+ ++ L + E + KVD+T+Y+ERHEF+ D V ++
Sbjct: 2 IKVVVRKRPLSELEKKKKDSDIITV-KNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDD 60
Query: 211 DVTNEEVYSETVEPIVPLIFHR-TKATCFAYGQTGSGKTYTMQ-----------PLPLKA 258
V N VY T++P++ ++ +CFAYGQTGSGKTYTM + A
Sbjct: 61 TVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYA 120
Query: 259 SHDILRLMHQMHRSQGFQLYVSFFEIYGGKVFDLLNDRKKLCMREDGKQQVCIVGLQEYR 318
+ DI ++ + +++SF+EIY GK++DLL RK + E+GK++V + L+ R
Sbjct: 121 AGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRKMVAALENGKKEVVVKDLKILR 180
Query: 319 VSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKPARLVGKLSF 378
V + + + G R G N+ESSRSHAIL + +K D +GK++F
Sbjct: 181 VLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLK------DINKNTSLGKIAF 234
Query: 379 IDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRD 438
IDLAGSERGADT +KQT+ +GA IN+SLLALKECIRA+D+D+ HIPFR S+LT+VLRD
Sbjct: 235 IDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFRDSELTKVLRD 294
Query: 439 SFVGDSRTVMISCISPSSGSCEHTINTLRYADRVKSLSKGNISKRDPLSSSSNLRDSTA 497
FVG S+++MI+ ISP+ CE T+NTLRY+ RVK+ + + + L S
Sbjct: 295 IFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVKNKGNSKLEGKPIPNPLLGLDSSRT 353
|
| >2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* Length = 387 | Back alignment and structure |
|---|
| >1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* Length = 410 | Back alignment and structure |
|---|
| >3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} Length = 355 | Back alignment and structure |
|---|
| >2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} Length = 350 | Back alignment and structure |
|---|
| >3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} Length = 388 | Back alignment and structure |
|---|
| >4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A* Length = 344 | Back alignment and structure |
|---|
| >1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* Length = 325 | Back alignment and structure |
|---|
| >2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* Length = 365 | Back alignment and structure |
|---|
| >2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} Length = 373 | Back alignment and structure |
|---|
| >3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* Length = 372 | Back alignment and structure |
|---|
| >1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... Length = 359 | Back alignment and structure |
|---|
| >1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 Length = 355 | Back alignment and structure |
|---|
| >3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} Length = 354 | Back alignment and structure |
|---|
| >3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* Length = 369 | Back alignment and structure |
|---|
| >1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} Length = 349 | Back alignment and structure |
|---|
| >2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
| >2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* Length = 366 | Back alignment and structure |
|---|
| >3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* Length = 412 | Back alignment and structure |
|---|
| >1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* Length = 347 | Back alignment and structure |
|---|
| >3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* Length = 344 | Back alignment and structure |
|---|
| >2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} Length = 376 | Back alignment and structure |
|---|
| >4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Length = 403 | Back alignment and structure |
|---|
| >2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} Length = 443 | Back alignment and structure |
|---|
| >3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} Length = 349 | Back alignment and structure |
|---|
| >2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9 Length = 100 | Back alignment and structure |
|---|
| >3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 Length = 117 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 716 | |||
| 2vvg_A | 350 | Kinesin-2; motor protein, nucleotide-binding, micr | 100.0 | |
| 2heh_A | 387 | KIF2C protein; kinesin, motor domain, ADP, structu | 100.0 | |
| 1v8k_A | 410 | Kinesin-like protein KIF2C; microtubule destabiliz | 100.0 | |
| 3b6u_A | 372 | Kinesin-like protein KIF3B; structural genomics co | 100.0 | |
| 3lre_A | 355 | Kinesin-like protein KIF18A; motor protein, nucleo | 100.0 | |
| 1ry6_A | 360 | Internal kinesin; kinesin motor domain, nucleotide | 100.0 | |
| 1x88_A | 359 | Kinesin-like protein KIF11; switch II, motor domai | 100.0 | |
| 1goj_A | 355 | Kinesin, kinesin heavy chain; motor protein, ATPas | 100.0 | |
| 3bfn_A | 388 | Kinesin-like protein KIF22; limited proteolysis, s | 100.0 | |
| 1bg2_A | 325 | Kinesin; motor protein, ATPase, microtubule associ | 100.0 | |
| 2wbe_C | 373 | Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit | 100.0 | |
| 2y65_A | 365 | Kinesin, kinesin heavy chain; motor protein; HET: | 100.0 | |
| 1t5c_A | 349 | CENP-E protein, centromeric protein E; kinesin mot | 100.0 | |
| 2owm_A | 443 | Nckin3-434, related to kinesin-like protein KIF1C; | 100.0 | |
| 3cob_A | 369 | Kinesin heavy chain-like protein; motor, switch II | 100.0 | |
| 2zfi_A | 366 | Kinesin-like protein KIF1A, kinesin heavy chain is | 100.0 | |
| 2h58_A | 330 | Kinesin-like protein KIFC3 variant; motor domain, | 100.0 | |
| 4a14_A | 344 | Kinesin, kinesin-like protein KIF7; motor protein, | 100.0 | |
| 3gbj_A | 354 | KIF13B protein; kinesin, motor domain, ADP, struct | 100.0 | |
| 2rep_A | 376 | Kinesin-like protein KIFC1; structural genomics co | 100.0 | |
| 1f9v_A | 347 | Kinesin-like protein KAR3; kinesin-related protein | 100.0 | |
| 3t0q_A | 349 | AGR253WP; kinesin, alpha and beta proteins, P-loop | 100.0 | |
| 3nwn_A | 359 | Kinesin-like protein KIF9; motor domain, ADP, stru | 100.0 | |
| 3u06_A | 412 | Protein claret segregational; motor domain, stalk | 100.0 | |
| 2nr8_A | 358 | Kinesin-like protein KIF9; motor domain, ADP, stru | 100.0 | |
| 3dc4_A | 344 | Kinesin-like protein NOD; catalytic domain, ATPase | 100.0 | |
| 4etp_A | 403 | Kinesin-like protein KAR3; kinesin motor protein, | 100.0 | |
| 4h1g_A | 715 | Maltose binding protein-cakar3 motor domain fusio; | 100.0 | |
| 2kin_B | 100 | Kinesin; motor protein, cytoskeleton; HET: ADP; 2. | 99.93 | |
| 3kin_B | 117 | Kinesin heavy chain; motor protein, cytoskeleton; | 99.9 | |
| 2o0a_A | 298 | S.cerevisiae chromosome XVI reading frame ORF YPL2 | 99.9 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 91.22 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 87.6 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 84.23 | |
| 4etp_B | 333 | Spindle POLE BODY-associated protein VIK1; kinesin | 83.49 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 80.64 |
| >2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-85 Score=709.47 Aligned_cols=338 Identities=36% Similarity=0.527 Sum_probs=280.5
Q ss_pred CCCeEEEEEeCCCCchhhhcCCCCeEEEeCCCCEEEEcccccccccc-ccccceEEEeceecCCCCCcHHhhhhcchhhH
Q 042351 148 VAKIKVVVRKRPLNKKEIAKKEEDIITIQPHSNYLTVHETKLKVDLT-EYVERHEFVFDAVLNEDVTNEEVYSETVEPIV 226 (716)
Q Consensus 148 ~~~IkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~~k~~vd~t-~~~~~~~F~FD~VFd~~asQeeVy~~~v~pLV 226 (716)
.++|+|+||+||++.+|...+...++.+.+...++++..++.....+ .....+.|.||+||+++++|++||+.+++|+|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv 82 (350)
T 2vvg_A 3 SDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTSCNYGIFQASFKPLI 82 (350)
T ss_dssp -CBCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEECC--------------EEEECSEEECTTCCHHHHHHHTTHHHH
T ss_pred CCCeEEEEEeCCCChhhhccCCceEEEEcCCCCEEEEeeccccccccccCCCceEeeCCEEECCCcchhHHHHHHHHHHH
Confidence 46999999999999999999999999998878889888776433322 23456889999999999999999999999999
Q ss_pred HHHhcCCCccEEEeCCCCCCCccccCC------CCccchHHHHHHHhhhccccceeeEEEEEEEecCeeeecCCCCCcce
Q 042351 227 PLIFHRTKATCFAYGQTGSGKTYTMQP------LPLKASHDILRLMHQMHRSQGFQLYVSFFEIYGGKVFDLLNDRKKLC 300 (716)
Q Consensus 227 ~~vl~G~N~tifAYGqTGSGKTyTm~G------l~~~a~~~if~~i~~~~~~~~~~V~vS~~EIYne~v~DLL~~~~~l~ 300 (716)
+.+|+|||+||||||||||||||||+| +.|+++.+||..+........|.|++||+|||||+|+|||++++.+.
T Consensus 83 ~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~l~ 162 (350)
T 2vvg_A 83 DAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKNNTKLP 162 (350)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTCCTTEEEEEEEEEEEEETTEEEETTTTEEEEC
T ss_pred HHHhCCCceeEEeecCCCCCCCEEeecCCccCchHHHHHHHHHHHHHhhccCCcEEEEEEEEEEeCCEEEEcccCCcCce
Confidence 999999999999999999999999976 67889999999998766677899999999999999999999988999
Q ss_pred eEecCCCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCCCceeEEEEEEEe
Q 042351 301 MREDGKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKPARLVGKLSFID 380 (716)
Q Consensus 301 ired~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~skL~fVD 380 (716)
+++|+.++++|.||+++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|++..... .......|+|+|||
T Consensus 163 i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~-~~~~~~~skl~lVD 241 (350)
T 2vvg_A 163 LKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIE-NKEVIRVGKLNLVD 241 (350)
T ss_dssp EEEETTTEEEETTCCCEEESSHHHHHHHHHHHHHHC----------CTTCEEEEEEEEEEEEC-----CEEEEEEEEEEE
T ss_pred eeEcCCCCEEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcceEEEEEEEEEeeccC-CCccEEEEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999998765432 22345689999999
Q ss_pred CCCCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhCCCCCCcCCCChhhHhhhhhcCCCceEEEEEEeCCCCCCHH
Q 042351 381 LAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGDSRTVMISCISPSSGSCE 460 (716)
Q Consensus 381 LAGSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~~~~hVPyRdSKLT~LLqdsLgGnskT~mIa~ISP~~~~~e 460 (716)
||||||..+++.. +.+.+|+..||+||++|++||.||..++.|||||+||||+||||+|||||+|+||+||||+..+++
T Consensus 242 LAGSEr~~~t~~~-g~rl~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~ 320 (350)
T 2vvg_A 242 LAGSERQSKTGAT-GETLVEGAKINLSLSALGLVISKLVEGATHIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYD 320 (350)
T ss_dssp CCCCCC----------------CTTHHHHHHHHHHHHHHHTCSSCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHH
T ss_pred CCCCCcccccccc-HHHHHHHHHHhHHHHHHHHHHHHHHcCCCCCCccccHHHHHHHHhcCCCccEEEEEEeCCccccHH
Confidence 9999998887655 456679999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccCCcccCCCCC
Q 042351 461 HTINTLRYADRVKSLSKGNISKRDPLS 487 (716)
Q Consensus 461 eTlsTLrfA~R~k~I~~~~~~~~dp~~ 487 (716)
||++||+||+|+|+|+++|.++.+|..
T Consensus 321 ETl~TL~fA~rak~i~n~~~~n~~~~~ 347 (350)
T 2vvg_A 321 ETMSTLRYADRAKQIKNKPRINEDPKD 347 (350)
T ss_dssp HHHHHHHHHHHHTTCBCCCCCCBSCTT
T ss_pred HHHHHHHHHHHHhhccccceecCCchh
Confidence 999999999999999999999988753
|
| >2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* | Back alignment and structure |
|---|
| >1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* | Back alignment and structure |
|---|
| >3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* | Back alignment and structure |
|---|
| >3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
| >1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... | Back alignment and structure |
|---|
| >1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
| >1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* | Back alignment and structure |
|---|
| >2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* | Back alignment and structure |
|---|
| >1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} | Back alignment and structure |
|---|
| >3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* | Back alignment and structure |
|---|
| >2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* | Back alignment and structure |
|---|
| >2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
| >4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A* | Back alignment and structure |
|---|
| >3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* | Back alignment and structure |
|---|
| >3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} | Back alignment and structure |
|---|
| >3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* | Back alignment and structure |
|---|
| >3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* | Back alignment and structure |
|---|
| >4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli} | Back alignment and structure |
|---|
| >2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
| >4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 716 | ||||
| d1v8ka_ | 362 | c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c | 6e-88 | |
| d1ry6a_ | 330 | c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodiu | 3e-86 | |
| d1x88a1 | 345 | c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), | 5e-79 | |
| d1bg2a_ | 323 | c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId | 3e-78 | |
| d1goja_ | 354 | c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5 | 3e-72 | |
| d2zfia1 | 349 | c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), | 5e-72 | |
| d1f9va_ | 342 | c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun | 2e-69 | |
| d2ncda_ | 368 | c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun | 5e-67 | |
| d1sdma_ | 364 | c.37.1.9 (A:) Kinesin heavy chain-like protein {Po | 1e-64 |
| >d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} Length = 362 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin species: Mouse (Mus musculus), kif2c [TaxId: 10090]
Score = 278 bits (711), Expect = 6e-88
Identities = 186/341 (54%), Positives = 231/341 (67%), Gaps = 23/341 (6%)
Query: 150 KIKVVVRKRPLNKKEIAKKEEDIITIQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVLN 209
+I V VRKRPLNK+E+AKKE D+I++ P L VHE KLKVDLT+Y+E F FD +
Sbjct: 31 RICVCVRKRPLNKQELAKKEIDVISV-PSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFD 89
Query: 210 EDVTNEEVYSETVEPIVPLIFHRTKATCFAYGQTGSGKTYTMQP-------------LPL 256
E +NE VY T P+V IF KATCFAYGQTGSGKT+TM +
Sbjct: 90 ETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAM 149
Query: 257 KASHDILRLMHQMHRSQGFQLYVSFFEIYGGKVFDLLNDRKKLCMREDGKQQVCIVGLQE 316
+ L +R+ ++YV+FFEIY GKVFDLLN + KL + ED +QQV +VGLQE
Sbjct: 150 ASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKAKLRVLEDSRQQVQVVGLQE 209
Query: 317 YRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKPARLVGKL 376
Y V+ D + ++I G+A R++G T AN SSRSHA Q+ ++ RL GK
Sbjct: 210 YLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKG--------RLHGKF 261
Query: 377 SFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVL 436
S +DLAG+ERGADT+ D+QTRMEGAEINKSLLALKECIRAL ++ H PFR SKLT+VL
Sbjct: 262 SLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVL 321
Query: 437 RDSFVG-DSRTVMISCISPSSGSCEHTINTLRYADRVKSLS 476
RDSF+G +SRT MI+ ISP SCE+T+NTLRYADRVK LS
Sbjct: 322 RDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELS 362
|
| >d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 330 | Back information, alignment and structure |
|---|
| >d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} Length = 345 | Back information, alignment and structure |
|---|
| >d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
| >d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} Length = 354 | Back information, alignment and structure |
|---|
| >d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} Length = 349 | Back information, alignment and structure |
|---|
| >d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
| >d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 368 | Back information, alignment and structure |
|---|
| >d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 364 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 716 | |||
| d1v8ka_ | 362 | Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090 | 100.0 | |
| d1ry6a_ | 330 | Kinesin {Malaria parasite (Plasmodium falciparum) | 100.0 | |
| d1sdma_ | 364 | Kinesin heavy chain-like protein {Potato (Solanum | 100.0 | |
| d1goja_ | 354 | Kinesin {Neurospora crassa [TaxId: 5141]} | 100.0 | |
| d1x88a1 | 345 | Kinesin {Human (Homo sapiens), mitotic kinesin eg5 | 100.0 | |
| d1bg2a_ | 323 | Kinesin {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2zfia1 | 349 | Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090 | 100.0 | |
| d1f9va_ | 342 | Kinesin motor Ncd (non-claret disjunctional) {Bake | 100.0 | |
| d2ncda_ | 368 | Kinesin motor Ncd (non-claret disjunctional) {Frui | 100.0 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 90.95 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 87.23 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 86.07 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 83.13 |
| >d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin species: Mouse (Mus musculus), kif2c [TaxId: 10090]
Probab=100.00 E-value=1.2e-78 Score=659.30 Aligned_cols=321 Identities=58% Similarity=0.854 Sum_probs=274.7
Q ss_pred CCCCeEEEEEeCCCCchhhhcCCCCeEEEeCCCCEEEEccccccccccccccceEEEeceecCCCCCcHHhhhhcchhhH
Q 042351 147 NVAKIKVVVRKRPLNKKEIAKKEEDIITIQPHSNYLTVHETKLKVDLTEYVERHEFVFDAVLNEDVTNEEVYSETVEPIV 226 (716)
Q Consensus 147 ~~~~IkV~vRvRPl~~~E~~~~~~~~v~~~~~~~~v~v~~~k~~vd~t~~~~~~~F~FD~VFd~~asQeeVy~~~v~pLV 226 (716)
..++|+|+||+||+++.|...++.++|.+. +...+.+++++..++.+...+.+.|.||+||+++++|++||+.++.|+|
T Consensus 28 ~~~~I~V~vRvRPl~~~E~~~~~~~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~Q~~Vy~~~~~plv 106 (362)
T d1v8ka_ 28 EEHRICVCVRKRPLNKQELAKKEIDVISVP-SKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLV 106 (362)
T ss_dssp SCCCEEEEEEECCCCHHHHHTTCCBCEECC-SSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHHH
T ss_pred CCCCEEEEEEeCCCChHHhhCCCceEEEEC-CCcEEEEeCCccccccccCcCceeEeCCeecCCCCCHHHHHHHHHHHHH
Confidence 356899999999999999999999999884 6778888988888888777788999999999999999999999999999
Q ss_pred HHHhcCCCccEEEeCCCCCCCccccCC------------CCccchHHHHHHHhh-hccccceeeEEEEEEEecCeeeecC
Q 042351 227 PLIFHRTKATCFAYGQTGSGKTYTMQP------------LPLKASHDILRLMHQ-MHRSQGFQLYVSFFEIYGGKVFDLL 293 (716)
Q Consensus 227 ~~vl~G~N~tifAYGqTGSGKTyTm~G------------l~~~a~~~if~~i~~-~~~~~~~~V~vS~~EIYne~v~DLL 293 (716)
+.+|+|||+||||||||||||||||+| +.++++.+||..+.. ......|.|+|||+|||||+++|||
T Consensus 107 ~~~l~G~n~tifaYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lf~~~~~~~~~~~~~~v~vS~~EIyne~i~DLL 186 (362)
T d1v8ka_ 107 QTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLL 186 (362)
T ss_dssp HHHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTSHHHHTTCCEEEEEEEEEETTEEEETT
T ss_pred HHHHhccCceEEeeccCCCCCceeeeecCCCCcccccCCeeeehhhhHHHHhhcccccccchhheeeeeeecCCeEEecc
Confidence 999999999999999999999999976 456888899988876 3345689999999999999999999
Q ss_pred CCCCcceeEecCCCcEEEeCcEEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCCeEEEEEEEEEeeCCCCCCCceeE
Q 042351 294 NDRKKLCMREDGKQQVCIVGLQEYRVSNVDTIRELIEKGNATRSTGTTGANEESSRSHAILQLAIKRSADGSDSKPARLV 373 (716)
Q Consensus 294 ~~~~~l~ired~~~~v~v~gLte~~V~s~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~~ 373 (716)
++...+.++++..+++++.|++++.|.+.+|++.+|..|.++|.+++|.+|..|||||+||+|.|.+. ....
T Consensus 187 ~~~~~~~~~~~~~~~~~v~gl~e~~v~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~i~~i~i~~~--------~~~~ 258 (362)
T d1v8ka_ 187 NKKAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTK--------GRLH 258 (362)
T ss_dssp TTTEEEEEEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC--------CCCSSEEEEEEEEESS--------SSEE
T ss_pred cCCccccccccccCCcccCCCEEEEecCHHHHHHHHhccccccccccccCcccCcceeeEEEEEEEec--------ceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999753 2457
Q ss_pred EEEEEEeCCCCCCCCCCCCCchhhhHHHHHHhHhHHHHHHHHHHHhCCCCCCcCCCChhhHhhhhh-cCCCceEEEEEEe
Q 042351 374 GKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDS-FVGDSRTVMISCI 452 (716)
Q Consensus 374 skL~fVDLAGSEr~~~t~~~~~~~r~E~~~INkSL~aL~~vI~AL~~~~~hVPyRdSKLT~LLqds-LgGnskT~mIa~I 452 (716)
++|+|||||||||..++...++.+..|+..||+||++|++||.+|.+++.|||||+||||+||||+ |||||+|+||+||
T Consensus 259 ~~l~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~~L~~vi~aL~~~~~hiPyR~SkLT~lLkdsllGgns~t~~i~~v 338 (362)
T d1v8ka_ 259 GKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMI 338 (362)
T ss_dssp EEEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC------CCCCHHHHHTTHHHHSSSEEEEEEEEE
T ss_pred eeEeeeecccccccccccccchhhhhhhhhhcccHHHHHHHHHHHhcCCCcCCCccCHHHHhhhhccCCCCccEEEEEEe
Confidence 999999999999988887777777779999999999999999999999999999999999999999 7999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcccc
Q 042351 453 SPSSGSCEHTINTLRYADRVKSLS 476 (716)
Q Consensus 453 SP~~~~~eeTlsTLrfA~R~k~I~ 476 (716)
||+..+++||++||+||+|||+|.
T Consensus 339 sp~~~~~~eTl~TL~fa~rak~It 362 (362)
T d1v8ka_ 339 SPGISSCEYTLNTLRYADRVKELS 362 (362)
T ss_dssp CCBGGGHHHHHHHHHHHHHHHTTC
T ss_pred CCChhhHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999983
|
| >d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
| >d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
| >d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
| >d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|