Citrus Sinensis ID: 042359

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------98
Protein Sequence
MAMKPNTSAVLVFDLLLFEILAIATISISFCNGSSYHVGCLGSEKEALLSFKRDLKDPSNRLASWSGNGDCCAWAGVFCDNITGHVLHLDLRNPFNYHKESEYEAIRRTALVGKINPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLCGAPLPKNCTENVSISEDENGDEDEDEVDHWLYVSAALGFVVGFWCFMGPLLVRRRWRYKYYHSLNRLGDRFVGAIRKCC
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHccccccccccccccccccccccccEEEccccccEEEEEccccccccccHHHHHHccccccEEccccccccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccEEEcccccccccccHHHHHcccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHcccccccEEEcccccccEEcccccccccccccEEEEEcccccccccHHHHHccccccccccEEEcccccccEEccccccccccccEEEcccccccccccccccccccccEEEccccccEEEEccccccccccccEEEccccEEEEEccccccccccccEEEcccccccccccHHccccccccEEEcccccccccccHHHHHccccccEEEccccccccccccccccccccEEEccccccccccccccccccEEEcccccccccccHHHHHcccccccccEEEcccccccccccccccccccccEEEccccccEEEccccccccccccEEEcccccccccccHHHHHcccccEEEcccccccccccHHHHHccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHccccccccccccccccccccccccccEEEEEEEEEEccccHHHHHHccccEEEEcccccccccccHHHHccccccccccccccccccccccccccccccEEccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccccccccccccccccEEEEEEEcccccEEEEEEccccccccccccHcccccccccccccHHHHccHcccEEEccccccccccccHHHcccccccEEEccccccccccccccccccccEEEEcccccccccccHHHHHccccccEEEcccccccccccHHHHHHcccccEEEEccccccccccccccccccccEEEEccccccccccccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHHHccccccEEEccccccccccccHHHcccccccEEEcccccccccccHHHHcccccccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHcHccccEEEcccccccccccHHHHHHcccccEEEEccccEEEEccccccccccEEEEEEccccccccccHHHHccccccEEEEccccccccccHHHHHHccccEEEEcccccccccccccccccccEEEEEccccccccccccccccEEEEcccccccccccccccHHcccccccEEEEEccccccccccHHHccccccEEEEcccccccccccccccccccccEEEEccccccccccHHHHccccEEEEEcccccccccccHHHHHcccccEEEEccccccEEcccHHHHHcccccEEEccccEEEEEccHHHHcHHHHHHcccccccccccccccccccHHHHHHHHEEcccccHHHHcccccccEEEEEEccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHccHHHccHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEcc
Coil and Loop (DISEMBL)
MAMKPNTSAVLVFDLLLFEILAIATISISfcngssyhvgclgsEKEALLSFKRdlkdpsnrlaswsgngdccawagvfcdnitghvlhldlrnpfnyhkeseYEAIRRTALVgkinpslldlkhlsyldlsfndfqgiqiprffgsmgnlrylnlsrtriggmiphhlgnlsnlqfldlssnyllyvdnfwwlsglsflehldLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSllatanfssltvldlsdnqfdkwfipswvfgpiprglqnltslrhlgldsnhfnssipNWLYRFIHLEYLslsnnslqgtidsealgnltsiswldlslnmgiegriprsmaslcnlkslnlrgVHLSQEISEILDIFSGcvsnglesldlrsdsiygHLTDQlgqfknivtldfannsivglipeslgqlsTLRVLRindnklngtLSAIHFANLTKlswfrvdgnkltlgvkhdwippfqLVALGlrncyvgsrfplwlysqKHLQFLYLVnssisdifpirflksasqlkfldlgqnqihgpipnltefTGLLILSVYsnnmsgplplissnlvfldlsnnlfsgsispflCYRINEtkslnalqlndnylngelpdcwmsyqnlktlklsnnkftgnlpysmgsLTSLVWLHLGENRLSGNILVSLknctalesldvgenefvgniptwIGERFSRMVVLILRSnkfhgplptglcdlAFLQILDIAdnnlsgaipncinnlTGMVTACSFTRSvqqylplpidVGVILVEKASvvskgemvdyEDILNLVRMIDisrnnfsgkipleVTNLKALQSLNFSynsftgripesigvmrslesidfsanqlsgeipesmsslTFLNHlnlsnnnltgkipsstqlqsfdvssfagndlcgaplpknctenvsisedengdededevDHWLYVSAALGFVVGFWCfmgpllvrrrwRYKYYHSLNRLGDRFvgairkcc
Flexible Loop (DISEMBL)
mamkpntsAVLVFDLLLFEILAIATISISFCNGSSYHVGCLGSEKEALLSFKRDLKDPSNRLASWSGNGDCCAWAGVFCDNITGHVLHLDLRNPFNYHKESEYEAIRRTALVGKINPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKasvvskgemvdYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLCGAPLPKNCTENVSISEDENGDEDEDEVDHWLYVSAALGFVVGFWCFMGPLLVRRRWRYKYYHSlnrlgdrfvGAIRKCC
Low Complexity Region (SEG)
MAMKPNTSAVLVFDLLLFEILAIATISISFCNGSSYHVGCLGSEKEALLSFKRDLKDPSNRLASWSGNGDCCAWAGVFCDNITGHVLHLDLRNPFNYHKESEYEAIRRTALVGKINPslldlkhlsyldlsFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMssltflnhlnlsnnnlTGKIPSSTQLQSFDVSSFAGNDLCGAPLPKNCTENVSISedengdededevdHWLYVSAALGFVVGFWCFMGPLLVRRRWRYKYYHSLNRLGDRFVGAIRKCC
Disordered region (IsUnstruct)
********AVLVFDLLLFEILAIATISISFCNGSSYHVGCLGSEKEALLSFKRDLK***NRLASWSGNGDCCAWAGVFCDNITGHVLHLDLRNPFNYHKESEYEAIRRTALVGKINPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDF***************LTFLNHLNL**********************FAGNDLCGA************************VDHWLYVSAALGFVVGFWCFMGPLLVRRRWRYKYYHSLNRLGDRFVGAIRK**
Disordered Region (DISOPRED)
***********VFDLLLFEILAIATISISFCNGSSY***CLGSEKEALLSFKRDLKDPSNRLASWSGNGDCCAWAGVFCDNITGHVLHLDLRNPFNYHKESEYEAIRRTALVGKINPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACS**RSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLCGAP**************************WLYVSAALGFVVGFWCFMGPLLVRRRWRYKYYHSLNRLGDRFVGAIRKCC
Disordered Region (DISEMBL)
MAMKPNTSAVLVFDLLLFEILAIATISISFCNGSSYHVGCLGSEKEALLSFKRDLKDPSNRLASWSGNGDCCAWAGVFCDNITGHVLHLDLRNPFNYHKESEYEAIRRTALVGKINPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLCGAPLPKNCTENVS************EVDHWLYVSAALGFVVGFWCFMGPLLVRRRWRYKYYHSLNRLGDRFVGAIRKCC
Disordered Region (DISPRO)
*****NTSAVLVFDLLLFEILAIATISISFCNGSSYHVGCLGSEKEALLSFKRDLKDPSNRLASWSGNGDCCAWAGVFCDNITGHVLHLDLRNPFNYHKESEYEAIRRTALVGKINPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLCGAPLPKNCT***************DEVDHWLYVSAALGFVVGFWCFMGPLLVRRRWRYKYYHSLNRLGDRFVGAIRKCC
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAMKPNTSAVLVFDLLLFEILAIATISISFCNGSSYHVGCLGSEKEALLSFKRDLKDPSNRLASWSGNGDCCAWAGVFCDNITGHVLHLDLRNPFNYHKESEYEAIRRTALVGKINPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLCGAPLPKNCTENVSISEDENGDEDEDEVDHWLYVSAALGFVVGFWCFMGPLLVRRRWRYKYYHSLNRLGDRFVGAIRKCC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	979	2.2.26 [Sep-21-2011]
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.789	0.618	0.313	4e-80
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.747	0.584	0.305	1e-75
Q9C9H7	847	Receptor-like protein 12	no	no	0.643	0.743	0.322	1e-71
Q9FL28	1173	LRR receptor-like serine/	no	no	0.676	0.564	0.309	6e-69
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.644	0.572	0.298	1e-59
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.591	0.525	0.309	2e-57
O49318	1124	Probable leucine-rich rep	no	no	0.648	0.564	0.286	8e-57
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.704	0.578	0.292	8e-54
Q8L899	1207	Systemin receptor SR160 O	N/A	no	0.796	0.646	0.268	5e-53
Q9ZPS9	1143	Serine/threonine-protein	no	no	0.566	0.485	0.308	6e-53

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  300 bits (767), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 292/932 (31%), Positives = 435/932 (46%), Gaps = 159/932 (17%)

Query: 39  GCLGSEKEALLSFKRDL---KDPSNRLASW-SGNGDCCAWAGVFCDN----------ITG 84
           G + ++ + LL  K+ L       + L  W S N + C+W GV CDN          +TG
Sbjct: 21  GIINNDLQTLLEVKKSLVTNPQEDDPLRQWNSDNINYCSWTGVTCDNTGLFRVIALNLTG 80

Query: 85  HVLHLDLRNPFNYHKESEYEAIRRTALVGKINPSLLDLKHLSYLDLSFNDFQGIQIPRFF 144
             L   +   F       +  +    LVG I  +L +L  L  L L  N   G +IP   
Sbjct: 81  LGLTGSISPWFGRFDNLIHLDLSSNNLVGPIPTALSNLTSLESLFLFSNQLTG-EIPSQL 139

Query: 145 GSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDL 204
           GS+ N+R L +    + G IP  LGNL NLQ L L+S  L                    
Sbjct: 140 GSLVNIRSLRIGDNELVGDIPETLGNLVNLQMLALASCRL-------------------- 179

Query: 205 RSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFI 264
                         T  +PS +  RL   Q                 L L DN       
Sbjct: 180 --------------TGPIPSQLG-RLVRVQ----------------SLILQDN------- 201

Query: 265 PSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEA 324
             ++ GPIP  L N + L       N  N +IP  L R  +LE L+L+NNSL G I S+ 
Sbjct: 202 --YLEGPIPAELGNCSDLTVFTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIPSQ- 258

Query: 325 LGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEI-------SEILDIF 377
           LG ++ + +L L  N  ++G IP+S+A L NL++L+L   +L+ EI       S++LD+ 
Sbjct: 259 LGEMSQLQYLSLMANQ-LQGLIPKSLADLGNLQTLDLSANNLTGEIPEEFWNMSQLLDLV 317

Query: 378 ------------SGCVSN-GLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIP 424
                       S C +N  LE L L    + G +  +L + +++  LD +NNS+ G IP
Sbjct: 318 LANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGSIP 377

Query: 425 ESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVA 484
           E+L +L  L  L +++N L GTLS    +NLT L W  +  N L   +  +     +L  
Sbjct: 378 EALFELVELTDLYLHNNTLEGTLSP-SISNLTNLQWLVLYHNNLEGKLPKEISALRKLEV 436

Query: 485 LGLR-------------NC-----------YVGSRFPLWLYSQKHLQFLYLVNSSISDIF 520
           L L              NC           +     P  +   K L  L+L  + +    
Sbjct: 437 LFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGGL 496

Query: 521 PIRFLKSASQLKFLDLGQNQIHGPIPNLTEF-TGLLILSVYSNNMSGPLP--LIS-SNLV 576
           P   L +  QL  LDL  NQ+ G IP+   F  GL  L +Y+N++ G LP  LIS  NL 
Sbjct: 497 PAS-LGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSLISLRNLT 555

Query: 577 FLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNK 636
            ++LS+N  +G+I P LC     + S  +  + +N    E+P    + QNL  L+L  N+
Sbjct: 556 RINLSHNRLNGTIHP-LC----GSSSYLSFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQ 610

Query: 637 FTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGER 696
            TG +P+++G +  L  L +  N L+G I + L  C  L  +D+  N   G IP W+G +
Sbjct: 611 LTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLG-K 669

Query: 697 FSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTR 756
            S++  L L SN+F   LPT L +   L +L +  N+L+G+IP  I NL  +        
Sbjct: 670 LSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGAL-------- 721

Query: 757 SVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLK 816
                        V+ ++K      G +      L+ +  + +SRN+ +G+IP+E+  L+
Sbjct: 722 ------------NVLNLDKNQF--SGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQ 767

Query: 817 ALQS-LNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNN 875
            LQS L+ SYN+FTG IP +IG +  LE++D S NQL+GE+P S+  +  L +LN+S NN
Sbjct: 768 DLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNN 827

Query: 876 LTGKIPSSTQLQSFDVSSFAGND-LCGAPLPK 906
           L GK+    Q   +   SF GN  LCG+PL +
Sbjct: 828 LGGKL--KKQFSRWPADSFLGNTGLCGSPLSR 857

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  285 bits (729), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 280/918 (30%), Positives = 412/918 (44%), Gaps = 186/918 (20%)

Query: 62  LASW-SGNGDCCAWAGVFCDNITGHVLHLDLRNPFNYHKESEYEAIRRTALVGKINPSLL 120
           L  W SG+   C W GV C      ++ L+L                   L G I+PS+ 
Sbjct: 50  LRDWNSGSPSYCNWTGVTCGG--REIIGLNLSG---------------LGLTGSISPSIG 92

Query: 121 DLKHLSYLDLSFNDFQGI------------------------QIPRFFGSMGNLRYLNLS 156
              +L ++DLS N   G                          IP   GS+ NL+ L L 
Sbjct: 93  RFNNLIHIDLSSNRLVGPIPTTLSNLSSSLESLHLFSNLLSGDIPSQLGSLVNLKSLKLG 152

Query: 157 RTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWL 216
              + G IP   GNL NLQ                                         
Sbjct: 153 DNELNGTIPETFGNLVNLQM---------------------------------------- 172

Query: 217 MVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGL 276
                      L LA+C+L             L  L L DN+ +         GPIP  +
Sbjct: 173 -----------LALASCRLTGLIPSRFGRLVQLQTLILQDNELE---------GPIPAEI 212

Query: 277 QNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDL 336
            N TSL       N  N S+P  L R  +L+ L+L +NS  G I S+ LG+L SI +L+L
Sbjct: 213 GNCTSLALFAAAFNRLNGSLPAELNRLKNLQTLNLGDNSFSGEIPSQ-LGDLVSIQYLNL 271

Query: 337 SLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEIL-------------DIFSG---- 379
             N  ++G IP+ +  L NL++L+L   +L+  I E               +  SG    
Sbjct: 272 IGNQ-LQGLIPKRLTELANLQTLDLSSNNLTGVIHEEFWRMNQLEFLVLAKNRLSGSLPK 330

Query: 380 --CVSN-GLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVL 436
             C +N  L+ L L    + G +  ++   +++  LD +NN++ G IP+SL QL  L  L
Sbjct: 331 TICSNNTSLKQLFLSETQLSGEIPAEISNCQSLKLLDLSNNTLTGQIPDSLFQLVELTNL 390

Query: 437 RINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHD--WIPPFQLVAL--------- 485
            +N+N L GTLS+   +NLT L  F +  N L   V  +  ++   +++ L         
Sbjct: 391 YLNNNSLEGTLSS-SISNLTNLQEFTLYHNNLEGKVPKEIGFLGKLEIMYLYENRFSGEM 449

Query: 486 --GLRNC-------YVGSRF----PLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLK 532
              + NC       + G+R     P  +   K L  L+L  + +    P   L +  Q+ 
Sbjct: 450 PVEIGNCTRLQEIDWYGNRLSGEIPSSIGRLKDLTRLHLRENELVGNIPAS-LGNCHQMT 508

Query: 533 FLDLGQNQIHGPIPNLTEF-TGLLILSVYSNNMSGPLP--LIS-SNLVFLDLSNNLFSGS 588
            +DL  NQ+ G IP+   F T L +  +Y+N++ G LP  LI+  NL  ++ S+N F+GS
Sbjct: 509 VIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQGNLPDSLINLKNLTRINFSSNKFNGS 568

Query: 589 ISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSL 648
           ISP LC     + S  +  + +N   G++P       NL  L+L  N+FTG +P + G +
Sbjct: 569 ISP-LC----GSSSYLSFDVTENGFEGDIPLELGKSTNLDRLRLGKNQFTGRIPRTFGKI 623

Query: 649 TSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSN 708
           + L  L +  N LSG I V L  C  L  +D+  N   G IPTW+G +   +  L L SN
Sbjct: 624 SELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPTWLG-KLPLLGELKLSSN 682

Query: 709 KFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDV 768
           KF G LPT +  L  +  L +  N+L+G+IP  I NL  +  A +   + Q   PLP  +
Sbjct: 683 KFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQAL-NALNLEEN-QLSGPLPSTI 740

Query: 769 GVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQS-LNFSYNS 827
           G                     L+ +  + +SRN  +G+IP+E+  L+ LQS L+ SYN+
Sbjct: 741 GK--------------------LSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYNN 780

Query: 828 FTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSSTQLQ 887
           FTGRIP +I  +  LES+D S NQL GE+P  +  +  L +LNLS NNL GK+    Q  
Sbjct: 781 FTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKL--KKQFS 838

Query: 888 SFDVSSFAGN-DLCGAPL 904
            +   +F GN  LCG+PL
Sbjct: 839 RWQADAFVGNAGLCGSPL 856

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  272 bits (695), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 238/739 (32%), Positives = 350/739 (47%), Gaps = 109/739 (14%)

Query: 268 VFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGN 327
           ++G IP  L NL+ L  + L  N F   IP  +     L +L L+NN L G I S +LGN
Sbjct: 122 LYGEIPSSLGNLSHLTLVNLYFNKFVGEIPASIGNLNQLRHLILANNVLTGEIPS-SLGN 180

Query: 328 LTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLES 387
           L+ +  L+L  N  + G+IP S+  L  L++L+L                          
Sbjct: 181 LSRLVNLELFSNRLV-GKIPDSIGDLKQLRNLSLA------------------------- 214

Query: 388 LDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTL 447
               S+++ G +   LG   N+V L   +N +VG +P S+G L  LRV+   +N L+G +
Sbjct: 215 ----SNNLIGEIPSSLGNLSNLVHLVLTHNQLVGEVPASIGNLIELRVMSFENNSLSGNI 270

Query: 448 SAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQ 507
             I FANLTKLS F +  N  T     D      L    +        FP  L     L+
Sbjct: 271 -PISFANLTKLSIFVLSSNNFTSTFPFDMSIFHNLEYFDVSYNSFSGPFPKSLLLIPSLE 329

Query: 508 FLYLVNSSISDIFPIRFLKSASQLKFLDL--GQNQIHGPIP-------NLTE-------F 551
            +YL  +  +   PI F  ++S  K  DL  G+N++HGPIP       NL E       F
Sbjct: 330 SIYLQENQFTG--PIEFANTSSSTKLQDLILGRNRLHGPIPESISRLLNLEELDISHNNF 387

Query: 552 TG-----------LLILSVYSNNMSGPLP---------LISSN--------------LVF 577
           TG           LL L +  NN+ G +P         ++S N              +  
Sbjct: 388 TGAIPPTISKLVNLLHLDLSKNNLEGEVPACLWRLNTMVLSHNSFSSFENTSQEEALIEE 447

Query: 578 LDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQ-NLKTLKLSNNK 636
           LDL++N F G I   +C    +  SL  L L++N  +G +P C  ++  ++K L L +N 
Sbjct: 448 LDLNSNSFQGPIPYMIC----KLSSLGFLDLSNNLFSGSIPSCIRNFSGSIKELNLGDNN 503

Query: 637 FTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGER 696
           F+G LP      T LV L +  N+L G    SL NC ALE ++V  N+     P+W+ E 
Sbjct: 504 FSGTLPDIFSKATELVSLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWL-ES 562

Query: 697 FSRMVVLILRSNKFHGPLPTGLCDLAF--LQILDIADNNLSGAIPNC-INNLTGMVTACS 753
              + VL LRSNKF+GPL      + F  L+I+DI+ NN SG +P    +N   M T   
Sbjct: 563 LPSLHVLNLRSNKFYGPLYHRHASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDMTT--- 619

Query: 754 FTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVT 813
            T  + QY+            +  +V+KG  + +E I    R ID S N  +G IP  + 
Sbjct: 620 LTEEMDQYMTEFWRYADSYYHEMEMVNKGVDMSFERIRRDFRAIDFSGNKINGNIPESLG 679

Query: 814 NLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSN 873
            LK L+ LN S N+FT  IP  +  +  LE++D S N+LSG+IP+ +++L+FL+++N S+
Sbjct: 680 YLKELRVLNLSGNAFTSVIPRFLANLTKLETLDISRNKLSGQIPQDLAALSFLSYMNFSH 739

Query: 874 NNLTGKIPSSTQLQSFDVSSFAGN-------DLCGAPLPKNCTENVSISEDENGDEDEDE 926
           N L G +P  TQ Q    SSF  N       D+C      N T  +     E+  E E+ 
Sbjct: 740 NLLQGPVPRGTQFQRQKCSSFLDNPGLYGLEDICRDTGALNPTSQLP----EDLSEAEEN 795

Query: 927 VDHWLYVSAALGFVVGFWC 945
           + +W  V+AA+ +  G  C
Sbjct: 796 MFNW--VAAAIAYGPGVLC 812

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  263 bits (672), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 230/743 (30%), Positives = 351/743 (47%), Gaps = 81/743 (10%)

Query: 225 LVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRH 284
           +V + L   QL      A AN + L VLDL+ N F          G IP  +  LT L  
Sbjct: 74  VVSVSLLEKQLEGVLSPAIANLTYLQVLDLTSNSFT---------GKIPAEIGKLTELNQ 124

Query: 285 LGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEG 344
           L L  N+F+ SIP+ ++   ++ YL L NN L G +  E +   +S+  +    N  + G
Sbjct: 125 LILYLNYFSGSIPSGIWELKNIFYLDLRNNLLSGDV-PEEICKTSSLVLIGFDYN-NLTG 182

Query: 345 RIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLG 404
           +IP  +  L +L+     G HL+  I     +  G ++N L  LDL  + + G +    G
Sbjct: 183 KIPECLGDLVHLQMFVAAGNHLTGSIP----VSIGTLAN-LTDLDLSGNQLTGKIPRDFG 237

Query: 405 QFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVD 464
              N+ +L    N + G IP  +G  S+L  L + DN+L G + A    NL +L   R+ 
Sbjct: 238 NLLNLQSLVLTENLLEGDIPAEIGNCSSLVQLELYDNQLTGKIPA-ELGNLVQLQALRIY 296

Query: 465 GNKLTLGVKHDWIPPFQLVALGL-RNCYVG-----------------------SRFPLWL 500
            NKLT  +        QL  LGL  N  VG                         FP  +
Sbjct: 297 KNKLTSSIPSSLFRLTQLTHLGLSENHLVGPISEEIGFLESLEVLTLHSNNFTGEFPQSI 356

Query: 501 YSQKHLQFLYLVNSSISDIFPIRF-----------------------LKSASQLKFLDLG 537
            + ++L  L +  ++IS   P                          + + + LK LDL 
Sbjct: 357 TNLRNLTVLTVGFNNISGELPADLGLLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLS 416

Query: 538 QNQIHGPIPNLTEFTGLLILSVYSNNMSGPLP---LISSNLVFLDLSNNLFSGSISPFLC 594
            NQ+ G IP       L  +S+  N+ +G +P      SNL  L +++N  +G++ P   
Sbjct: 417 HNQMTGEIPRGFGRMNLTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPL-- 474

Query: 595 YRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWL 654
             I + + L  LQ++ N L G +P    + ++L  L L +N FTG +P  M +LT L  L
Sbjct: 475 --IGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLTLLQGL 532

Query: 655 HLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPL 714
            +  N L G I   + +   L  LD+  N+F G IP     +   +  L L+ NKF+G +
Sbjct: 533 RMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALF-SKLESLTYLSLQGNKFNGSI 591

Query: 715 PTGLCDLAFLQILDIADNNLSGAIP-NCINNLTGMVTACSFTRSVQQYLPLPIDVG---- 769
           P  L  L+ L   DI+DN L+G IP   + +L  M    +F+ ++     +P ++G    
Sbjct: 592 PASLKSLSLLNTFDISDNLLTGTIPGELLASLKNMQLYLNFSNNLLTG-TIPKELGKLEM 650

Query: 770 VILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEV-TNLKALQSLNFSYNSF 828
           V  ++ ++ +  G +         V  +D S+NN SG IP EV   +  + SLN S NSF
Sbjct: 651 VQEIDLSNNLFSGSIPRSLQACKNVFTLDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSF 710

Query: 829 TGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSSTQLQS 888
           +G IP+S G M  L S+D S+N L+GEIPES+++L+ L HL L++NNL G +P S   ++
Sbjct: 711 SGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKLASNNLKGHVPESGVFKN 770

Query: 889 FDVSSFAGN-DLCGAPLP-KNCT 909
            + S   GN DLCG+  P K CT
Sbjct: 771 INASDLMGNTDLCGSKKPLKPCT 793

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  232 bits (591), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 206/691 (29%), Positives = 331/691 (47%), Gaps = 60/691 (8%)

Query: 223 PSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSL 282
           P ++ L L++  L      +      L  LDLS N            G IP+ + N +SL
Sbjct: 73  PEVLSLNLSSMVLSGKLSPSIGGLVHLKQLDLSYNGLS---------GKIPKEIGNCSSL 123

Query: 283 RHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGI 342
             L L++N F+  IP  + + + LE L + NN + G++  E +GNL S+S L ++ +  I
Sbjct: 124 EILKLNNNQFDGEIPVEIGKLVSLENLIIYNNRISGSLPVE-IGNLLSLSQL-VTYSNNI 181

Query: 343 EGRIPRSMASLCNLKSLNLRGVHLSQEI-SEILDIFSGCVSNGLESLDLRSDSIYGHLTD 401
            G++PRS+ +L  L S       +S  + SEI     GC S  L  L L  + + G L  
Sbjct: 182 SGQLPRSIGNLKRLTSFRAGQNMISGSLPSEI----GGCES--LVMLGLAQNQLSGELPK 235

Query: 402 QLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWF 461
           ++G  K +  +    N   G IP  +   ++L  L +  N+L G +      +L  L + 
Sbjct: 236 EIGMLKKLSQVILWENEFSGFIPREISNCTSLETLALYKNQLVGPIPK-ELGDLQSLEFL 294

Query: 462 RVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFP 521
            +  N L   +  +       + +      +    PL L + + L+ LYL  + ++   P
Sbjct: 295 YLYRNGLNGTIPREIGNLSYAIEIDFSENALTGEIPLELGNIEGLELLYLFENQLTGTIP 354

Query: 522 IRFLKSASQLKFLDLGQNQIHGPIP-NLTEFTGLLILSVYSNNMSGPLPLI---SSNLVF 577
           +  L +   L  LDL  N + GPIP       GL +L ++ N++SG +P      S+L  
Sbjct: 355 VE-LSTLKNLSKLDLSINALTGPIPLGFQYLRGLFMLQLFQNSLSGTIPPKLGWYSDLWV 413

Query: 578 LDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKF 637
           LD+S+N  SG I  +LC   N    +  L L  N L+G +P    + + L  L+L+ N  
Sbjct: 414 LDMSDNHLSGRIPSYLCLHSN----MIILNLGTNNLSGNIPTGITTCKTLVQLRLARNNL 469

Query: 638 TGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERF 697
            G  P ++    ++  + LG+NR  G+I   + NC+AL+ L + +N F G +P  IG   
Sbjct: 470 VGRFPSNLCKQVNVTAIELGQNRFRGSIPREVGNCSALQRLQLADNGFTGELPREIG-ML 528

Query: 698 SRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRS 757
           S++  L + SNK  G +P+ + +   LQ LD+  NN SG +P+ + +L  +        +
Sbjct: 529 SQLGTLNISSNKLTGEVPSEIFNCKMLQRLDMCCNNFSGTLPSEVGSLYQLELLKLSNNN 588

Query: 758 VQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISR--NNFSGKIPLEVTNL 815
           +   +P+ +                         NL R+ ++    N F+G IP E+ +L
Sbjct: 589 LSGTIPVALG------------------------NLSRLTELQMGGNLFNGSIPRELGSL 624

Query: 816 KALQ-SLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNN 874
             LQ +LN SYN  TG IP  +  +  LE +  + N LSGEIP S ++L+ L   N S N
Sbjct: 625 TGLQIALNLSYNKLTGEIPPELSNLVMLEFLLLNNNNLSGEIPSSFANLSSLLGYNFSYN 684

Query: 875 NLTGKIPSSTQLQSFDVSSFAGND-LCGAPL 904
           +LTG IP    L++  +SSF GN+ LCG PL
Sbjct: 685 SLTGPIP---LLRNISMSSFIGNEGLCGPPL 712

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  224 bits (572), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 205/663 (30%), Positives = 307/663 (46%), Gaps = 84/663 (12%)

Query: 267 WVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALG 326
           ++ GPIP+ L    SL  L L +N F+  IP  L   I L+ L L  N L G+I  + +G
Sbjct: 102 FISGPIPQDLSLCRSLEVLDLCTNRFHGVIPIQLTMIITLKKLYLCENYLFGSIPRQ-IG 160

Query: 327 NLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEI-SEILDIFSGCVSNGL 385
           NL+S+  L +  N  + G IP SMA L  L+ +       S  I SEI    SGC S  L
Sbjct: 161 NLSSLQELVIYSN-NLTGVIPPSMAKLRQLRIIRAGRNGFSGVIPSEI----SGCES--L 213

Query: 386 ESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNG 445
           + L L  + + G L  QL + +N+  L    N + G IP S+G +S L VL +++N   G
Sbjct: 214 KVLGLAENLLEGSLPKQLEKLQNLTDLILWQNRLSGEIPPSVGNISRLEVLALHENYFTG 273

Query: 446 TLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKH 505
           ++       LTK+    +  N+LT  +  +         +      +    P       +
Sbjct: 274 SIPR-EIGKLTKMKRLYLYTNQLTGEIPREIGNLIDAAEIDFSENQLTGFIPKEFGHILN 332

Query: 506 LQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLI-LSVYSNNM 564
           L+ L+L  + +    P R L   + L+ LDL  N+++G IP   +F   L+ L ++ N +
Sbjct: 333 LKLLHLFENILLGPIP-RELGELTLLEKLDLSINRLNGTIPQELQFLPYLVDLQLFDNQL 391

Query: 565 SGPLP-LIS--SNLVFLDLSNNLFSGSISPFLCY--------------------RINETK 601
            G +P LI   SN   LD+S N  SG I    C                      +   K
Sbjct: 392 EGKIPPLIGFYSNFSVLDMSANSLSGPIPAHFCRFQTLILLSLGSNKLSGNIPRDLKTCK 451

Query: 602 SLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRL 661
           SL  L L DN L G LP    + QNL  L+L  N  +GN+   +G L +L  L L  N  
Sbjct: 452 SLTKLMLGDNQLTGSLPIELFNLQNLTALELHQNWLSGNISADLGKLKNLERLRLANNNF 511

Query: 662 SGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDL 721
           +G I   + N T +   ++  N+  G+IP  +G   + +  L L  NKF G +   L  L
Sbjct: 512 TGEIPPEIGNLTKIVGFNISSNQLTGHIPKELGSCVT-IQRLDLSGNKFSGYIAQELGQL 570

Query: 722 AFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSK 781
            +L+IL ++DN L+G IP+   +LT ++                                
Sbjct: 571 VYLEILRLSDNRLTGEIPHSFGDLTRLME------------------------------- 599

Query: 782 GEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQ-SLNFSYNSFTGRIPESIGVMR 840
                          + +  N  S  IP+E+  L +LQ SLN S+N+ +G IP+S+G ++
Sbjct: 600 ---------------LQLGGNLLSENIPVELGKLTSLQISLNISHNNLSGTIPDSLGNLQ 644

Query: 841 SLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGN-DL 899
            LE +  + N+LSGEIP S+ +L  L   N+SNNNL G +P +   Q  D S+FAGN  L
Sbjct: 645 MLEILYLNDNKLSGEIPASIGNLMSLLICNISNNNLVGTVPDTAVFQRMDSSNFAGNHGL 704

Query: 900 CGA 902
           C +
Sbjct: 705 CNS 707

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  223 bits (567), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 204/713 (28%), Positives = 321/713 (45%), Gaps = 78/713 (10%)

Query: 202 LDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDK 261
           LDL S+NLS      +    L +LV L LA   L         N S L V+ L++NQF  
Sbjct: 90  LDLSSMNLSGIVSPSI--GGLVNLVYLNLAYNALTGDIPREIGNCSKLEVMFLNNNQFG- 146

Query: 262 WFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTID 321
                   G IP  +  L+ LR   + +N  +  +P  +    +LE L    N+L G + 
Sbjct: 147 --------GSIPVEINKLSQLRSFNICNNKLSGPLPEEIGDLYNLEELVAYTNNLTGPL- 197

Query: 322 SEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCV 381
             +LGNL  ++      N    G IP  +    NLK L L    +S E+ + + +     
Sbjct: 198 PRSLGNLNKLTTFRAGQN-DFSGNIPTEIGKCLNLKLLGLAQNFISGELPKEIGMLVK-- 254

Query: 382 SNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDN 441
              L+ + L  +   G +   +G   ++ TL    NS+VG IP  +G + +L+ L +  N
Sbjct: 255 ---LQEVILWQNKFSGFIPKDIGNLTSLETLALYGNSLVGPIPSEIGNMKSLKKLYLYQN 311

Query: 442 KLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLY 501
           +LNGT+       L KLS                     +++ +      +    P+ L 
Sbjct: 312 QLNGTIPK----ELGKLS---------------------KVMEIDFSENLLSGEIPVELS 346

Query: 502 SQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIP-NLTEFTGLLILSVY 560
               L+ LYL  + ++ I P   L     L  LDL  N + GPIP      T +  L ++
Sbjct: 347 KISELRLLYLFQNKLTGIIPNE-LSKLRNLAKLDLSINSLTGPIPPGFQNLTSMRQLQLF 405

Query: 561 SNNMSGPLPL---ISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGEL 617
            N++SG +P    + S L  +D S N  SG I PF+C + N    L  L L  N + G +
Sbjct: 406 HNSLSGVIPQGLGLYSPLWVVDFSENQLSGKIPPFICQQSN----LILLNLGSNRIFGNI 461

Query: 618 PDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALES 677
           P   +  ++L  L++  N+ TG  P  +  L +L  + L +NR SG +   +  C  L+ 
Sbjct: 462 PPGVLRCKSLLQLRVVGNRLTGQFPTELCKLVNLSAIELDQNRFSGPLPPEIGTCQKLQR 521

Query: 678 LDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGA 737
           L +  N+F  N+P  I  + S +V   + SN   GP+P+ + +   LQ LD++ N+  G+
Sbjct: 522 LHLAANQFSSNLPNEI-SKLSNLVTFNVSSNSLTGPIPSEIANCKMLQRLDLSRNSFIGS 580

Query: 738 IPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMI 797
           +P  + +L  +             +P  I     L E                      +
Sbjct: 581 LPPELGSLHQLEILRLSENRFSGNIPFTIGNLTHLTE----------------------L 618

Query: 798 DISRNNFSGKIPLEVTNLKALQ-SLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEI 856
            +  N FSG IP ++  L +LQ ++N SYN F+G IP  IG +  L  +  + N LSGEI
Sbjct: 619 QMGGNLFSGSIPPQLGLLSSLQIAMNLSYNDFSGEIPPEIGNLHLLMYLSLNNNHLSGEI 678

Query: 857 PESMSSLTFLNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGND-LCGAPLPKNC 908
           P +  +L+ L   N S NNLTG++P +   Q+  ++SF GN  LCG  L ++C
Sbjct: 679 PTTFENLSSLLGCNFSYNNLTGQLPHTQIFQNMTLTSFLGNKGLCGGHL-RSC 730

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  213 bits (541), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 237/809 (29%), Positives = 364/809 (44%), Gaps = 119/809 (14%)

Query: 222 LPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTS 281
           L +L EL LA  Q          N   L  LDLS N            G +PR L  L  
Sbjct: 88  LKNLRELCLAGNQFSGKIPPEIWNLKHLQTLDLSGNSLT---------GLLPRLLSELPQ 138

Query: 282 LRHLGLDSNHFNSSIP-NWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNM 340
           L +L L  NHF+ S+P ++      L  L +SNNSL G I  E +G L+++S L + LN 
Sbjct: 139 LLYLDLSDNHFSGSLPPSFFISLPALSSLDVSNNSLSGEIPPE-IGKLSNLSNLYMGLN- 196

Query: 341 GIEGRIPRSMASLCNLKSLNLRGVH----LSQEISEILDIFSGCVSNGLESLDLRSDSIY 396
              G+IP  + ++  LK+           L +EIS++           L  LDL  + + 
Sbjct: 197 SFSGQIPSEIGNISLLKNFAAPSCFFNGPLPKEISKL---------KHLAKLDLSYNPLK 247

Query: 397 GHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLT 456
             +    G+  N+  L+  +  ++GLIP  LG   +L+ L ++ N L+G L  +  + + 
Sbjct: 248 CSIPKSFGELHNLSILNLVSAELIGLIPPELGNCKSLKSLMLSFNSLSGPL-PLELSEIP 306

Query: 457 KLSWFRVDGNKLTLGVKHDWIPPFQLV-ALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSS 515
            L+ F  + N+L+ G    W+  ++++ +L L N       P  +     L+ L L ++ 
Sbjct: 307 LLT-FSAERNQLS-GSLPSWMGKWKVLDSLLLANNRFSGEIPHEIEDCPMLKHLSLASNL 364

Query: 516 ISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFT---GLLILSVYSNNMSGPLPLIS 572
           +S   P R L  +  L+ +DL  N + G I  + +     G L+L+    N S P  L  
Sbjct: 365 LSGSIP-RELCGSGSLEAIDLSGNLLSGTIEEVFDGCSSLGELLLTNNQINGSIPEDLWK 423

Query: 573 SNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNY--LNGELPDCWMSYQNLKTL 630
             L+ LDL +N F+G I   L       KS N ++   +Y  L G LP    +  +LK L
Sbjct: 424 LPLMALDLDSNNFTGEIPKSLW------KSTNLMEFTASYNRLEGYLPAEIGNAASLKRL 477

Query: 631 KLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIP 690
            LS+N+ TG +P  +G LTSL  L+L  N   G I V L +CT+L +LD+G N   G IP
Sbjct: 478 VLSDNQLTGEIPREIGKLTSLSVLNLNANMFQGKIPVELGDCTSLTTLDLGSNNLQGQIP 537

Query: 691 TWIGERFSRMVVLILRSNKFHGPLPTG---------LCDLAFLQ---ILDIADNNLSGAI 738
             I    +++  L+L  N   G +P+          + DL+FLQ   I D++ N LSG I
Sbjct: 538 DKI-TALAQLQCLVLSYNNLSGSIPSKPSAYFHQIEMPDLSFLQHHGIFDLSYNRLSGPI 596

Query: 739 PN----CI---------NNLTGMVTAC---------------SFTRSVQQYLP------- 763
           P     C+         N+L+G + A                + T S+ + +        
Sbjct: 597 PEELGECLVLVEISLSNNHLSGEIPASLSRLTNLTILDLSGNALTGSIPKEMGNSLKLQG 656

Query: 764 -----------LPIDVGVI--LVEKASVVSKGEMVDYEDILNLVRM--IDISRNNFSGKI 808
                      +P   G++  LV+     +K +      + NL  +  +D+S NN SG++
Sbjct: 657 LNLANNQLNGHIPESFGLLGSLVKLNLTKNKLDGPVPASLGNLKELTHMDLSFNNLSGEL 716

Query: 809 PLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNH 868
             E++ ++ L  L    N FTG IP  +G +  LE +D S N LSGEIP  +  L  L  
Sbjct: 717 SSELSTMEKLVGLYIEQNKFTGEIPSELGNLTQLEYLDVSENLLSGEIPTKICGLPNLEF 776

Query: 869 LNLSNNNLTGKIPSSTQLQSFDVSSFAGN-DLCGAPLPKNCTENVSISEDENGDEDEDEV 927
           LNL+ NNL G++PS    Q    +  +GN +LCG  +  +C             E     
Sbjct: 777 LNLAKNNLRGEVPSDGVCQDPSKALLSGNKELCGRVVGSDCK-----------IEGTKLR 825

Query: 928 DHWLYVSAALGFVVGFWCFMGPLLVRRRW 956
             W      LGF +  + F+  L   RRW
Sbjct: 826 SAWGIAGLMLGFTIIVFVFVFSL---RRW 851

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8L899|BRI1_SOLPE Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1

 Score =  210 bits (534), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 252/938 (26%), Positives = 387/938 (41%), Gaps = 158/938 (16%)

Query: 38  VGCLGSEKEALLSFKRDLKDPSNRLASWSGNGDCCAWAGVFCDNITGHVLHLDLRNPFNY 97
           V  L  + + LLSFK  L      L +W  + D C++ GV C N    V  +DL N F  
Sbjct: 37  VNGLYKDSQQLLSFKAALPPTPTLLQNWLSSTDPCSFTGVSCKN--SRVSSIDLSNTF-- 92

Query: 98  HKESEYEAIRRTALVGKINPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMG-NLRYLNLS 156
                      +     +   LL L +L  L L   +  G          G  L  ++L+
Sbjct: 93  ----------LSVDFSLVTSYLLPLSNLESLVLKNANLSGSLTSAAKSQCGVTLDSIDLA 142

Query: 157 RTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWL 216
              I G I       S++    + SN                     L+S+NLSK F  L
Sbjct: 143 ENTISGPI-------SDISSFGVCSN---------------------LKSLNLSKNF--L 172

Query: 217 MVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGL 276
               K                  +L  A FS L VLDLS N    + +  WV        
Sbjct: 173 DPPGK-----------------EMLKGATFS-LQVLDLSYNNISGFNLFPWVSS------ 208

Query: 277 QNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDL 336
                L    +  N    SIP     F +L YL LS N+      S    + +++  LDL
Sbjct: 209 MGFVELEFFSIKGNKLAGSIPEL--DFKNLSYLDLSANNFSTVFPS--FKDCSNLQHLDL 264

Query: 337 SLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIY 396
           S N    G I  S++S   L  LNL         ++ + +     S  L+ L LR +   
Sbjct: 265 SSNK-FYGDIGSSLSSCGKLSFLNLTN-------NQFVGLVPKLPSESLQYLYLRGNDFQ 316

Query: 397 GHLTDQLGQF-KNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANL 455
           G   +QL    K +V LD + N+  G++PESLG+ S+L ++ I++N  +G L       L
Sbjct: 317 GVYPNQLADLCKTVVELDLSYNNFSGMVPESLGECSSLELVDISNNNFSGKLPVDTLLKL 376

Query: 456 TKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQ--KHLQFLYLVN 513
           + +    +  NK   G+   +    +L  L + +  +    P  +      +L+ LYL N
Sbjct: 377 SNIKTMVLSFNKFVGGLPDSFSNLPKLETLDMSSNNLTGIIPSGICKDPMNNLKVLYLQN 436

Query: 514 SSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPN-LTEFTGLLILSVYSNNMSGPLPLIS 572
           +      P   L + SQL  LDL  N + G IP+ L   + L  L ++ N +SG +P   
Sbjct: 437 NLFKGPIPDS-LSNCSQLVSLDLSFNYLTGSIPSSLGSLSKLKDLILWLNQLSGEIP--- 492

Query: 573 SNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKL 632
             L++L                      ++L  L L+ N L G +P    +   L  + L
Sbjct: 493 QELMYL----------------------QALENLILDFNDLTGPIPASLSNCTKLNWISL 530

Query: 633 SNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTW 692
           SNN+ +G +P S+G L++L  L LG N +SGNI   L NC +L  LD+  N   G+IP  
Sbjct: 531 SNNQLSGEIPASLGRLSNLAILKLGNNSISGNIPAELGNCQSLIWLDLNTNFLNGSIPPP 590

Query: 693 IGERFSRMVVLILRSNKFHGPLPTGLCD-------LAFLQILDIADNNLSGAIPNCINNL 745
           + ++   + V +L   ++      G  +       L F  I     + +S   P      
Sbjct: 591 LFKQSGNIAVALLTGKRYVYIKNDGSKECHGAGNLLEFGGIRQEQLDRISTRHP------ 644

Query: 746 TGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFS 805
                 C+FTR  +             + + +    G M+           +D+S N   
Sbjct: 645 ------CNFTRVYRG------------ITQPTFNHNGSMI----------FLDLSYNKLE 676

Query: 806 GKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTF 865
           G IP E+  +  L  LN  +N  +G IP+ +G ++++  +D S N+ +G IP S++SLT 
Sbjct: 677 GSIPKELGAMYYLSILNLGHNDLSGMIPQQLGGLKNVAILDLSYNRFNGTIPNSLTSLTL 736

Query: 866 LNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLCGAPLPKNCTENVSISEDENGDEDED 925
           L  ++LSNNNL+G IP S    +F    FA N LCG PLP  C+       D N  +   
Sbjct: 737 LGEIDLSNNNLSGMIPESAPFDTFPDYRFANNSLCGYPLPLPCSSGP--KSDANQHQKSH 794

Query: 926 EVDHWLYVSAALGFVVGFWCFMGPLLV----RRRWRYK 959
                L  S A+G +   +C  G ++V    ++R R K
Sbjct: 795 RRQASLAGSVAMGLLFSLFCIFGLIIVAIETKKRRRKK 832

Receptor with a serine/threonine-protein kinase activity. Involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants. May also regulate, in response to brassinosteroid binding, a signaling cascade involved in plant development.

Solanum peruvianum (taxid: 4082)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZPS9|BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1

 Score =  210 bits (534), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 195/632 (30%), Positives = 302/632 (47%), Gaps = 77/632 (12%)

Query: 312 SNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSM-ASLCNLKSLNLRGVHLSQEI 370
           S++ L GT+        +++  + LS N    G++P  +  S   L++L+L   +++  I
Sbjct: 135 SSSGLIGTLPENFFSKYSNLISITLSYN-NFTGKLPNDLFLSSKKLQTLDLSYNNITGPI 193

Query: 371 SEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQL 430
           S +    S CVS  +  LD   +SI G+++D L    N+ +L+ + N+  G IP+S G+L
Sbjct: 194 SGLTIPLSSCVS--MTYLDFSGNSISGYISDSLINCTNLKSLNLSYNNFDGQIPKSFGEL 251

Query: 431 STLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPP--------FQL 482
             L+ L ++ N+L G                              WIPP         Q 
Sbjct: 252 KLLQSLDLSHNRLTG------------------------------WIPPEIGDTCRSLQN 281

Query: 483 VALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIH 542
           + L   N + G   P  L S   LQ L L N++IS  FP   L+S   L+ L L  N I 
Sbjct: 282 LRLSYNN-FTGV-IPESLSSCSWLQSLDLSNNNISGPFPNTILRSFGSLQILLLSNNLIS 339

Query: 543 GPIP-NLTEFTGLLILSVYSNNMSGPLPLI----SSNLVFLDLSNNLFSGSISPFLCYRI 597
           G  P +++    L I    SN  SG +P      +++L  L L +NL +G I P     I
Sbjct: 340 GDFPTSISACKSLRIADFSSNRFSGVIPPDLCPGAASLEELRLPDNLVTGEIPP----AI 395

Query: 598 NETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLG 657
           ++   L  + L+ NYLNG +P    + Q L+      N   G +P  +G L +L  L L 
Sbjct: 396 SQCSELRTIDLSLNYLNGTIPPEIGNLQKLEQFIAWYNNIAGEIPPEIGKLQNLKDLILN 455

Query: 658 ENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTG 717
            N+L+G I     NC+ +E +    N   G +P   G   SR+ VL L +N F G +P  
Sbjct: 456 NNQLTGEIPPEFFNCSNIEWVSFTSNRLTGEVPKDFG-ILSRLAVLQLGNNNFTGEIPPE 514

Query: 718 LCDLAFLQILDIADNNLSGAIPNCINN------LTGMVTA--CSFTRSVQ---QYLPLPI 766
           L     L  LD+  N+L+G IP  +        L+G+++    +F R+V    + +   +
Sbjct: 515 LGKCTTLVWLDLNTNHLTGEIPPRLGRQPGSKALSGLLSGNTMAFVRNVGNSCKGVGGLV 574

Query: 767 DVGVILVEKASVVSKGEMVDYE-----DILNL------VRMIDISRNNFSGKIPLEVTNL 815
           +   I  E+   +   +  D+       IL+L      +  +D+S N   GKIP E+  +
Sbjct: 575 EFSGIRPERLLQIPSLKSCDFTRMYSGPILSLFTRYQTIEYLDLSYNQLRGKIPDEIGEM 634

Query: 816 KALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNN 875
            ALQ L  S+N  +G IP +IG +++L   D S N+L G+IPES S+L+FL  ++LSNN 
Sbjct: 635 IALQVLELSHNQLSGEIPFTIGQLKNLGVFDASDNRLQGQIPESFSNLSFLVQIDLSNNE 694

Query: 876 LTGKIPSSTQLQSFDVSSFAGN-DLCGAPLPK 906
           LTG IP   QL +   + +A N  LCG PLP+
Sbjct: 695 LTGPIPQRGQLSTLPATQYANNPGLCGVPLPE 726

Receptor with a serine/threonine-protein kinase activity, which may transduce extracellular spatial and temporal signals into downstream cell differentiation responses in provascular and procambial cells. In contrast to BRI1, BRL1 and BRL3, it does not bind brassinolide.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	979
224072885	1024	predicted protein [Populus trichocarpa]	0.947	0.906	0.503	0.0
315436720	1020	verticillium wilt resistance-like protei	0.965	0.926	0.480	0.0
255581850	1082	leucine-rich repeat receptor protein kin	0.968	0.876	0.445	0.0
209970607	1045	M18S-3Ap [Malus floribunda]	0.968	0.907	0.460	0.0
255543977	1075	serine/threonine-protein kinase bri1, pu	0.969	0.882	0.442	0.0
350284769	1041	receptor-like protein [Malus x domestica	0.962	0.904	0.448	0.0
209970609	1041	AL07-2p [Malus floribunda]	0.961	0.903	0.454	0.0
209970603	1038	AM19-5p [Malus floribunda]	0.955	0.900	0.446	0.0
350284739	978	receptor-like protein [Malus x domestica	0.932	0.933	0.461	0.0
350284767	965	receptor-like protein [Malus sieversii]	0.936	0.950	0.466	0.0

>gi|224072885|ref|XP_002303927.1| predicted protein [Populus trichocarpa] gi|222841359|gb|EEE78906.1| predicted protein [Populus trichocarpa]

 Score =  854 bits (2206), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/995 (50%), Positives = 646/995 (64%), Gaps = 67/995 (6%)

Query: 35   SYHVGCLGSEKEALLSFKRDLKDPSNRLASWSG-NGDCCAWAGVFCDNITGHVLHLDLRN 93
            S+  GC   E++ALL FK DLKDPSNRLASW+G  GDCC W GV CDN+TGHV+ L LR+
Sbjct: 32   SFTQGCSQIERDALLKFKHDLKDPSNRLASWAGFGGDCCTWRGVICDNVTGHVIELRLRS 91

Query: 94   P------FNYHKESEYEAIRRTALVGKINPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSM 147
                    +    ++YE   +  L G+INPSL+ LKHL YLDL  NDF G+QIP+F G +
Sbjct: 92   ISFADYLASSGASTQYEDYLKLILSGRINPSLVSLKHLRYLDLRNNDFGGVQIPKFIGLI 151

Query: 148  GNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLY-VDNFWWLSGLSFLEHLDLRS 206
            G+L++L+LS     G IPH LGNLS+L +L+L   Y  + V+N  WLS LS LE LDL  
Sbjct: 152  GSLKHLDLSDAGFAGTIPHGLGNLSDLNYLNLHDYYSQFNVENLNWLSQLSSLEFLDLSL 211

Query: 207  VNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFI-- 264
            V+L   F+WL V N LPSLVEL L+ CQL     +   NFSSL++LDLS N  D+  I  
Sbjct: 212  VHLGNVFNWLEVINTLPSLVELHLSYCQLPPVPPILYVNFSSLSILDLSSNYVDESAISM 271

Query: 265  ---PSWVF----------------GPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIH 305
               P WV                 GPIP GLQNLT L+ L L  NHF+SSIP WLY F H
Sbjct: 272  LNFPRWVSHLKTLLSLNLANNNFQGPIPNGLQNLTLLKALDLSINHFSSSIPEWLYGFEH 331

Query: 306  LEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLN--MGIEGRIPRSMASLCNLKSLNLRG 363
            L+ L+L +N+LQG + S A+GN+TS+  LDLSLN  +  EG IP S   LCNL++L+L  
Sbjct: 332  LKLLNLGSNNLQGVL-SSAIGNMTSLISLDLSLNHELKFEGGIPGSFKKLCNLRTLSLSN 390

Query: 364  VHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLI 423
            V L+Q+I+E+L++  GCVS  +ESLDL    ++G LT+ LG+F+N+  L   +NSI G I
Sbjct: 391  VKLNQDIAEVLEVLLGCVSEEVESLDLAGCLLFGQLTNHLGKFRNLAYLGLRSNSISGPI 450

Query: 424  PESLGQLSTLRVLRINDNKLNGTL------------------------SAIHFANLTKLS 459
            P +LG+L +LR L ++DNKLNGTL                        S +HFANL  L 
Sbjct: 451  PMALGELVSLRSLVLSDNKLNGTLPKSFGELTKLEEMDISHNLFQGEVSEVHFANLKNLR 510

Query: 460  WFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDI 519
             F   GN+L L V  DWIPP QLV + LR+  VG +FP W+   +HL +L + NSSIS  
Sbjct: 511  NFSAAGNQLNLRVSPDWIPP-QLVFIDLRSWNVGPQFPKWVRPLEHLSYLDISNSSISST 569

Query: 520  FPIRFLKSASQLKFLDLGQNQIHGPIPNLT--EFTG-LLILSVYSNNMSGPLPLISSNLV 576
             PI F   + ++++L+L  NQI G IP+    +FT    ++ + SN   GPLP I SN+ 
Sbjct: 570  IPIWFWTMSFRMEYLNLSHNQIQGVIPSKLKLDFTASYPLVDLSSNQFKGPLPSIFSNVG 629

Query: 577  FLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNK 636
             LDLSNN FSGS+  FLC++I+E K++  L L +N L+G +PDCW S+Q L  +KLSNNK
Sbjct: 630  ALDLSNNSFSGSMLNFLCHKIDELKNMQVLNLGENLLSGVIPDCWSSWQYLVAIKLSNNK 689

Query: 637  FTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGER 696
             +GN+P S+G+L+ L  LH+  + LSG + +SLKNCT L +LDV ENE VG++P WIG+R
Sbjct: 690  LSGNIPDSIGALSLLESLHIRNSSLSGKLPISLKNCTKLITLDVAENELVGSMPAWIGKR 749

Query: 697  FSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTR 756
            FS MVVL +R+NKFHG +P  LC+LA LQILD+A N LS +IP C N L+ M T      
Sbjct: 750  FSSMVVLNMRANKFHGRIPRELCNLASLQILDLAHNRLSWSIPTCFNKLSAMATRNDSLG 809

Query: 757  SVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLK 816
             +       +D G    +   +V KG++V+Y  IL  VR ID+S N   G+IP EVT L 
Sbjct: 810  KIY------LDSGSSTFDNVLLVMKGKVVEYSTILKFVRSIDLSSNALCGEIPEEVTRLS 863

Query: 817  ALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNL 876
             LQSLN S NS TGRIPE IG +R LES+DFS NQLSGEIP+SMS LTFL+HLNLS+N L
Sbjct: 864  ELQSLNLSQNSLTGRIPEGIGSLRYLESMDFSVNQLSGEIPQSMSDLTFLSHLNLSDNRL 923

Query: 877  TGKIPSSTQLQSFDVSSFAGNDLCGAPLPKNCTENVSISEDENGDEDEDEVD-HWLYVSA 935
             G+IPS TQLQSF  SSF+GN+LCG PL KNC+ +     +   +ED + +   W YVS 
Sbjct: 924  RGRIPSGTQLQSFGPSSFSGNELCGPPLSKNCSVDNKFHVEHEREEDGNGLKGRWFYVSM 983

Query: 936  ALGFVVGFWCFMGPLLVRRRWRYKYYHSLNRLGDR 970
             LGF+VGFW  +GPL+  RRWRY YYH L+RL D+
Sbjct: 984  VLGFIVGFWGVVGPLMFNRRWRYVYYHFLDRLRDQ 1018

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|315436720|gb|ADU18533.1| verticillium wilt resistance-like protein [Gossypium barbadense]

 Score =  828 bits (2138), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/1004 (48%), Positives = 636/1004 (63%), Gaps = 59/1004 (5%)

Query: 17   LFEILAIATISISFCNGSSYHVGCLGSEKEALLSFKRDLKDPSNRLASWSGNGDCCAWAG 76
            +F  L I T +  +   ++ +V C   E++ALL  K+DL DPS RLASW  N +CC W+G
Sbjct: 14   IFLALLIETSTFEYVCAANRNVSCPEVERQALLKLKQDLIDPSGRLASWGTNLNCCNWSG 73

Query: 77   VFCDNITGHVLHLDLRNPFNYHK--ESEYEAIRRTALVGKINPSLLDLKHLSYLDLSFND 134
            V CDN+TG+V+ L LRNP + +       EA  +    GKINPSLLDLKHL YLDLS ++
Sbjct: 74   VICDNLTGNVIQLRLRNPLDPYNGFYIPSEAYAKMWFSGKINPSLLDLKHLRYLDLSGSN 133

Query: 135  FQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSS-NYLLYVDNFWWL 193
            F GIQIP F GSM  LRYLNLS    GG++P  LGNL+NL  LDL   + L+Y +N  WL
Sbjct: 134  FGGIQIPEFLGSMHTLRYLNLSAAGFGGVVPPQLGNLTNLHVLDLHDFSSLVYAENLQWL 193

Query: 194  SGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLD 253
            S L  L+HLDL SVNLSKA DW  VTN LPSLVE+ L+ CQLH   L A  NFSSL++LD
Sbjct: 194  SHLVKLKHLDLSSVNLSKASDWFQVTNTLPSLVEIHLSGCQLHRLPLQADVNFSSLSILD 253

Query: 254  LSDNQFDKWFIPSWVF----------------GPIPRGLQNLTSLRHLGLDSNHFNSSIP 297
            LS N F    IP W+F                G +P GL++L+SLR+L L  N+F S+IP
Sbjct: 254  LSSNSFSNPLIPGWIFKLNSLLSLDLSHNNFQGQLPHGLRSLSSLRYLNLYWNNFKSAIP 313

Query: 298  NWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLK 357
            +WLY    LE+L+L +N   G+I S    NLTS++ LDLS N  + G +P SM SLC+LK
Sbjct: 314  SWLYGLTSLEFLNLGSNYFHGSI-SNGFQNLTSLTTLDLSDNE-LTGAVPNSMGSLCSLK 371

Query: 358  SLNLRGVHLSQEISEILDIFS--GCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFA 415
             + L G+HLS+++SEIL   S  GC+ NGLESL L S  I+GHLTD++  FKN+  L  +
Sbjct: 372  KIKLSGLHLSRDLSEILQALSSPGCLLNGLESLYLDSCEIFGHLTDRILLFKNLADLSLS 431

Query: 416  NNSIVGLIPESLGQLSTLRVLRINDNKLNGTL------------------------SAIH 451
             NSI G IP SLG L++LR L ++ N++NGTL                        S +H
Sbjct: 432  RNSISGSIPASLGLLASLRTLDLSQNRVNGTLPESIGQLWKMEKLWLSHNMLEGVVSEVH 491

Query: 452  FANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYL 511
            FANLT+L  F+  GN L L    +W+PPFQL  + L + ++G +FP WL SQ+   +L +
Sbjct: 492  FANLTRLRLFQASGNPLVLEASPEWVPPFQLGVMALSSWHLGPKFPSWLRSQRDFVYLDI 551

Query: 512  VNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPN---LTEFTGLLILSVYSNNMSGPL 568
              + I D FP  F   ++    L+L  NQI+G +P+    +    L+ + +  N+  GPL
Sbjct: 552  SVTGIIDTFPNWFWNLSTIYFSLNLSHNQIYGELPHRIGTSPVADLVYVDLSFNHFDGPL 611

Query: 569  PLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLK 628
            P +SS +  LDLS+NLFSG IS  LC ++ E   L  L L DN+L+GE+PDCWM++ N+ 
Sbjct: 612  PCLSSKVNTLDLSSNLFSGPISNLLCCKMEEPYWLETLHLADNHLSGEIPDCWMNWPNMV 671

Query: 629  TLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGN 688
            ++ L NN  +G +P SMGSL  L  LHL +N LSG +  SL+NCT+L ++D+GEN FVGN
Sbjct: 672  SVDLENNSLSGVIPSSMGSLNLLQSLHLRKNNLSGVLPSSLQNCTSLLAIDLGENHFVGN 731

Query: 689  IPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGM 748
            IP WIGE+ S  +++ L SN+F G +P  LC L++L ILD+A NNLSG IP C  NL+ M
Sbjct: 732  IPGWIGEKLSDSIIISLGSNRFQGQIPDNLCSLSYLTILDLAHNNLSGTIPKCFMNLSAM 791

Query: 749  VTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKI 808
                + +  +          G  L E   ++ KG +++Y   L LV  +D+S NN +G+I
Sbjct: 792  AANQNSSNPISYAFG---HFGTSL-ETLLLMIKGILLEYSSTLQLVTSMDLSDNNLAGEI 847

Query: 809  PLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNH 868
            P  +T+L  L+ LN S N   GRIP++IG +R LESID S NQL GEIP SMS+LTFL++
Sbjct: 848  PAGMTDLLGLRFLNLSNNQLKGRIPKNIGNLRLLESIDLSRNQLRGEIPPSMSALTFLSY 907

Query: 869  LNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLCGAPLPKNCTENVSISEDENGDE----DE 924
            LNLS NNLTGKIPSSTQLQSFD+SS+ GN LCG PL + C+ + + S D N +E    D 
Sbjct: 908  LNLSENNLTGKIPSSTQLQSFDISSYDGNHLCGPPLLEICSTDATTSSDHNNNENNEGDG 967

Query: 925  DEVDH-WLYVSAALGFVVGFWCFMGPLLVRRRWRYKYYHSLNRL 967
             EVD  W Y S A GFVVGFW  MGPLL  + WR++Y+  L RL
Sbjct: 968  LEVDWLWFYASMAFGFVVGFWVVMGPLLFNKSWRFRYFRILERL 1011

Source: Gossypium barbadense

Species: Gossypium barbadense

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581850|ref|XP_002531725.1| leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis] gi|223528628|gb|EEF30645.1| leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]

 Score =  792 bits (2046), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/1078 (44%), Positives = 648/1078 (60%), Gaps = 130/1078 (12%)

Query: 9    AVLVFDLLLFEILAIATISISFCNGS-SYHVGCLGSEKEALLSFKRDLKDPSNRLASWSG 67
            A + F  LLF ++A  T S    +GS +  VGC   E+EAL+ FK +L+DPS RLASW  
Sbjct: 4    ASVTFVSLLF-LIAATTFSFVHSHGSYNAAVGCNQIEREALMKFKDELQDPSKRLASWGA 62

Query: 68   NGDCCAWAGVFCDNITGHVLHLDLR-----------NPFNYHKESEYEAIRRTALVGKIN 116
            + +CC W GV CDN TGHV  L L+           +   Y+   EY  + R++  GK++
Sbjct: 63   DAECCTWHGVICDNFTGHVTELHLKILSSEEYYSSSDALGYYFYEEY--LERSSFRGKVS 120

Query: 117  PSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQF 176
             SLL+LKHL+YLDLS NDF GIQIP F GSM +LR+LNL     GG IPH LGNLSNLQ+
Sbjct: 121  QSLLNLKHLNYLDLSNNDFGGIQIPPFLGSMESLRHLNLYGAGFGGRIPHQLGNLSNLQY 180

Query: 177  LDLS-----SNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLA 231
            L+L+     ++ ++Y+++  WLS L  LE LD   V+LSKAF+WL V N LPSL EL L+
Sbjct: 181  LNLNAKSIYTSAVIYIESLQWLSSLRSLEFLDFSGVDLSKAFNWLDVLNTLPSLGELHLS 240

Query: 232  NCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVF----------------GPIPRG 275
              +L+   LL+  NFSSL  L+LS N F    +PSW+F                G IP  
Sbjct: 241  GSELYPIPLLSNVNFSSLLTLNLSANNF---VVPSWIFRLTTLATLDLSSNNFVGSIPIH 297

Query: 276  LQNLTSLRHL-----GLDSNHFN--------------------SSIPNWLYRFIHLEYLS 310
            LQN+T+LR L     GL+S+ FN                      IP+ +     L  L 
Sbjct: 298  LQNITTLRELYLSDSGLNSSIFNCLHGLAHLELLHLASNYNLDGKIPSTIGNLTSLRSLD 357

Query: 311  LSNNSLQGTIDSEALGNLTSISWLDLSLN-----------------------MGIEGRIP 347
            LS NSL+  I S A+GNLTS+  LDLS N                         +EG IP
Sbjct: 358  LSFNSLEEGIPS-AIGNLTSLKSLDLSRNSLEGDIPSAIGNLASLSSLDLSRNSLEGGIP 416

Query: 348  RSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFK 407
                +LCNL+SL L    LSQEI+E+ +I SGCVS+ LESL L S  + GHL+D+L +FK
Sbjct: 417  TWFRNLCNLRSLELSINKLSQEINEVFEILSGCVSDILESLILPSSQLSGHLSDRLVKFK 476

Query: 408  NIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTL-------------------- 447
            N+  LD  +N I G IPE+LG+L+ L  L + +NKLNG+L                    
Sbjct: 477  NLAYLDLNDNLISGPIPENLGELNFLISLDLGNNKLNGSLPIDFGMLSKLNYVDISNNSL 536

Query: 448  ----SAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCY-VGSRFPLWLYS 502
                S IHFANLT L+ F+   N+L L V  DW P FQ V+     C+ VG +FP W++S
Sbjct: 537  EGEISEIHFANLTNLATFKASSNQLRLRVSPDWFPAFQRVSTISLKCWKVGPQFPTWIHS 596

Query: 503  QKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLT-EFTGLLILSVYS 561
             K+L +L L NS+IS   P  F   +S+L  ++L  NQ+HG IP L+ + +   ++ + S
Sbjct: 597  LKYLAYLDLSNSTISSTLPTWFHNFSSRLYQINLSHNQMHGTIPYLSIDDSDYSLIDLSS 656

Query: 562  NNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCW 621
            NN  G +P ISSN   LDLSNN FSGSIS FLCY+    +++N L L +N  +GE+PDCW
Sbjct: 657  NNFGGSMPFISSNPFGLDLSNNSFSGSISSFLCYK---PRTINVLNLGENLFSGEIPDCW 713

Query: 622  MSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVG 681
            M++     ++LSNN F+GN+P S+G+L+ L  L++  N LSG + +SLK+CT+L+ LD+ 
Sbjct: 714  MNWNYTNVIRLSNNYFSGNIPESIGTLSELSVLNIRNNNLSGEMPISLKHCTSLQVLDLS 773

Query: 682  ENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNC 741
             NE  G I TW+G+ F   ++L LR NKFHG +P  LC +  L ILD A+NNL+G IP C
Sbjct: 774  GNELSGEITTWMGQHFQGTLILNLRGNKFHGFIPEELCGMTALVILDFANNNLNGTIPRC 833

Query: 742  INNLTGMVTACSFTRSVQQYLPLPIDVGVILV--EKASVVSKGEMVDYEDILNLVRMIDI 799
            INN T +++  S+ +  +    + +D G  L   E + +   G++V+Y   L  VR +D 
Sbjct: 834  INNFTALLSGTSYLKDGK----VLVDYGPTLTYSESSLIERNGKLVEYSTTLGFVRSLDF 889

Query: 800  SRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPES 859
            S N  SG+IP E+T+L+ L  LN S+NS TGRIPE+IG M++L+ +DFS NQLSGEIP+S
Sbjct: 890  SNNKLSGEIPEEMTSLRGLLFLNLSHNSLTGRIPENIGAMKALQILDFSRNQLSGEIPQS 949

Query: 860  MSSLTFLNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLCGAPLPKNCT-----ENVSI 914
            MSSLTFLN+LNLS+N L+G IPSSTQLQSFD SSF+GN+LCG PL ++C+      ++  
Sbjct: 950  MSSLTFLNNLNLSSNKLSGIIPSSTQLQSFDSSSFSGNNLCGPPLTQSCSGDGEKPDIEK 1009

Query: 915  SEDENGDEDEDEVDHW--LYVSAALGFVVGFWCFMGPLLVRRRWRYKYYHSLNRLGDR 970
               E+G     E   W   YVS A GFV+GFW  +GPL   +RWR  Y++ L  L ++
Sbjct: 1010 RTTEDGGNGSPEAIDWFYFYVSIAPGFVIGFWVVVGPLAFNKRWRRLYFNFLEDLWNK 1067

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209970607|gb|ACJ03066.1| M18S-3Ap [Malus floribunda]

 Score =  790 bits (2041), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/1030 (46%), Positives = 627/1030 (60%), Gaps = 82/1030 (7%)

Query: 15   LLLFEILAIATI--SISFCNGS-SYHVGCLGSEKEALLSFKRDLKDPSNRLASWSGN--G 69
            LLL   LAIATI  SI   NG+  +   C  SE++ALL FK+DL DP+N+LASW      
Sbjct: 9    LLLIRFLAIATITFSIGLSNGNPGWPPLCKESERQALLMFKQDLNDPANQLASWVAEEGS 68

Query: 70   DCCAWAGVFCDNITGHVLHLDLRNPFNYHKESEYEAIRRTALVGKINPSLLDLKHLSYLD 129
            DCC+W  V CD++TGH+  L L   + +     ++    +   GKINPSLL LKHL+YLD
Sbjct: 69   DCCSWTRVVCDHMTGHIQELHLDGSYFHPYSDPFDLDSDSCFSGKINPSLLSLKHLNYLD 128

Query: 130  LSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSN--YLLYV 187
            LS N+FQG QIP FFGSM +L +LNL+ +   G+IPH LGNLS+L++L+LSS+  + L V
Sbjct: 129  LSNNNFQGTQIPSFFGSMTSLTHLNLAYSEFYGIIPHKLGNLSSLRYLNLSSSNGFNLKV 188

Query: 188  DNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFS 247
            +N  W+SGLS L+HLDL  VNLSKA DWL VTN LPSLVEL ++NCQLH  + L T NF+
Sbjct: 189  ENLQWISGLSLLKHLDLSFVNLSKASDWLQVTNMLPSLVELDMSNCQLHQITPLPTTNFT 248

Query: 248  SLTVLDLSDNQFDK--------------------WF------------------------ 263
            SL VLDLS N+F+                     WF                        
Sbjct: 249  SLVVLDLSGNRFNSLMPMWVFSIKNLVSLRLIYCWFQGPIPSISQNITSLREIDLSLNSI 308

Query: 264  ----IPSWVF---------------GPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFI 304
                IP W+F               G +P  +QN+T L+ L L SN FNS+IP WLY   
Sbjct: 309  SLDPIPKWLFNQKDLALSLESNQLTGQLPSSIQNMTGLKVLNLGSNDFNSTIPEWLYSLN 368

Query: 305  HLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGV 364
            +LE L LS+N+L+G I S ++GN+TS+  L L  N+ +EG+IP S+  LC LK L+L   
Sbjct: 369  NLESLLLSSNALRGEI-SSSIGNMTSLVNLHLDNNL-LEGKIPNSLGHLCKLKDLDLSKN 426

Query: 365  HLS-QEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLI 423
            H + Q  S I +  S C  NG++SL LR  +I G +   LG   ++  LD + N   G  
Sbjct: 427  HFTVQRPSVIFESLSRCGPNGIKSLSLRYTNISGPIPMSLGNLSSLEKLDISGNQFNGTF 486

Query: 424  PESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLV 483
             E +GQL  L  L I++N L   +S + F+NLTKL  F  +GN  TL    DW+PPFQL 
Sbjct: 487  TEVIGQLKMLTDLDISNNSLEDAVSEVSFSNLTKLKHFIANGNSFTLKTSRDWVPPFQLE 546

Query: 484  ALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHG 543
             L L + ++G  +P+WL +Q  L  L L  + IS   P  F    S++++L+L  NQ++G
Sbjct: 547  ILQLDSWHLGPEWPMWLRTQTQLTRLSLSCTGISSTVPTWFWNLTSKVRYLNLSHNQLYG 606

Query: 544  PIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSL 603
             I N+     + ++ + SN+ +G LP++ ++L +LDLSN+ FSGS+  F C R +E + L
Sbjct: 607  QIQNIVA-GPMSVVDLSSNHFTGALPIVPTSLFWLDLSNSSFSGSVFHFFCDRPDEPRQL 665

Query: 604  NALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSG 663
            + L L +N L+G++PDCWMS+Q L  L L NN  TGN+P SMG L  L  LHL  N L G
Sbjct: 666  HFLHLGNNLLSGKVPDCWMSWQYLSFLNLENNNLTGNVPMSMGYLDWLESLHLRNNHLYG 725

Query: 664  NILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAF 723
             +  SL+NCT L  +D+GEN F G+IP WIG+  S + +L LRSNKF G +P  +C L  
Sbjct: 726  ELPHSLQNCTRLSVVDLGENGFSGSIPIWIGKSLSELQILNLRSNKFEGDIPNEVCYLTS 785

Query: 724  LQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPL-PIDVGVILVEKASVVSKG 782
            LQILD+A N LSG IP C +NL+ M    S +R    Y+ L  I V + +  KA +V+KG
Sbjct: 786  LQILDLAHNKLSGMIPRCFHNLSAMADF-SESRDASVYVILNGISVPLSVTAKAILVTKG 844

Query: 783  EMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSL 842
              ++Y  IL  V+ +D+S N   G+IP E+T+L AL+SLN S N FTGRIP  IG M  L
Sbjct: 845  REMEYGKILKFVKFMDLSCNFMYGEIPEELTDLLALKSLNLSNNHFTGRIPSKIGNMAQL 904

Query: 843  ESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLCGA 902
            ES+DFS NQL GEIP+SM++LTFL+HLNLSNNNLTG+IP STQLQS D SSF GN+LCGA
Sbjct: 905  ESLDFSMNQLDGEIPQSMTNLTFLSHLNLSNNNLTGRIPKSTQLQSLDQSSFVGNELCGA 964

Query: 903  PLPKNCTEN-----VSISEDENGDEDEDEVDHWLYVSAALGFVVGFWCFMGPLLVRRRWR 957
            PL KNC+EN      ++  D  G  +  E D W YVS  +GF  GFW  +G LLV   W 
Sbjct: 965  PLNKNCSENGVIPPPTVEHDGGGGYNLLE-DEWFYVSLGVGFFTGFWIVLGSLLVNMPWS 1023

Query: 958  YKYYHSLNRL 967
                  LNR+
Sbjct: 1024 ILLSQLLNRI 1033

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543977|ref|XP_002513051.1| serine/threonine-protein kinase bri1, putative [Ricinus communis] gi|223548062|gb|EEF49554.1| serine/threonine-protein kinase bri1, putative [Ricinus communis]

 Score =  771 bits (1990), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/1079 (44%), Positives = 641/1079 (59%), Gaps = 130/1079 (12%)

Query: 5    PNTSAVLVFDLLLFEILAIATISISFCNGSSYHVGCLGSEKEALLSFKRDLKDPSNRLAS 64
            P+++ + V  +L    L ++   + FCN      GC+ SE+EALL+FK  L D SN+LA+
Sbjct: 8    PSSTNISVITILFLWSLLLSIFPVGFCNA-----GCIQSEREALLNFKLHLSDTSNKLAN 62

Query: 65   WSGNGDCCAWAGVFCDNITGHVLHLDLRNP-FN--------YHKES---EYEAIRRTALV 112
            W G+GDCC W+GV C N TGHVL L L  P F+        Y +++     E   RTAL 
Sbjct: 63   WVGDGDCCRWSGVICHNSTGHVLELHLGTPSFSEYTGPGSFYSQQAASLSVEYYARTALA 122

Query: 113  GKINPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLS 172
            GKI+PSLL+LK+L YLDLS N+F+GI+IP+F GSM +LRYLNLS    GGMIP  LGNLS
Sbjct: 123  GKISPSLLNLKYLRYLDLSNNNFEGIRIPKFLGSMESLRYLNLSNAGFGGMIPPQLGNLS 182

Query: 173  NLQFLDLSS----------NYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKL 222
            NLQ+LDL             + ++V+N  WLS LS L+ LDL  VNL  +FDWL V N L
Sbjct: 183  NLQYLDLRVGDVHGFRARYTFNMHVENLHWLSSLSSLKFLDLSYVNL-YSFDWLNVINSL 241

Query: 223  PSLVELRLANCQLHHFSLLATAN--FSSLTVL-------------------------DLS 255
            PSL++L L+ CQL   S  +T N  FSSL +L                         DL 
Sbjct: 242  PSLLQLHLSRCQLGGASFPSTVNLNFSSLAILDLSVNDFQGPIPNSLQNLTSSLKELDLG 301

Query: 256  DNQFDKWFIPSWVFG-----------------------------------------PIPR 274
             N F+   +P+W++G                                          IP 
Sbjct: 302  YNSFNS-SLPNWLYGFTNLEFLSLNSNRLQGNISSLIGNMTSLITLDLSSNLAISGGIPT 360

Query: 275  GLQNLTSLRHLGLDSNHFNSSIPNWLYRFI-----HLEYLSLSNNSLQGTIDSEALGNLT 329
              ++L +LR L LD+   +  I + L          LE  S+ +  L G + ++ LG+  
Sbjct: 361  SFKHLCNLRSLVLDTVTLSQKINDVLEILSGCISDELESFSMYSCQLSGYL-TDDLGHFK 419

Query: 330  SISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLD 389
            +++ LDLS N  I G IP+S+  LCNL+SL+L G   SQEI+++L+I S C +N LESL 
Sbjct: 420  NLASLDLSYN-SISGPIPKSLRHLCNLRSLDLSGNRWSQEINDVLEILSDCPTNVLESLS 478

Query: 390  LRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSA 449
            L    + G +   LG+  +++ L  ++N + G +PES GQL+ L +   + N L G ++ 
Sbjct: 479  LSDCELSGPIPSSLGEMASLIRLSLSSNKLNGTLPESFGQLTRLEIAFFDGNLLEGEVTE 538

Query: 450  IHFANLTKLSWFRVDGNKLTLG----VKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKH 505
            +HFANLTKL  F  DG+ +  G    V  +W PPFQL  L LR+  +G +FP WL+S ++
Sbjct: 539  VHFANLTKL--FIFDGSMMANGPVLRVGSNWTPPFQLHYLSLRSWKIGPQFPAWLHSLRY 596

Query: 506  LQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTG---LLILSVYSN 562
            L+ L L NS IS   P+ F   +S   + +L  NQIHG IPN+   +    + +  + SN
Sbjct: 597  LEILDLSNSGISSTIPVWFWDMSSNFAYANLSHNQIHGVIPNVPVVSNDYRITMFDMSSN 656

Query: 563  NMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWM 622
            N  GP+P  SSNL  LDLS+N F+GSI  FLCY++ E K +  L L  N L+GE+PDCW+
Sbjct: 657  NFRGPVPYFSSNLSALDLSSNSFTGSIINFLCYKMQEVKKMEVLNLGGNLLSGEIPDCWL 716

Query: 623  SYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGE 682
            S+Q+L  + LSNNKFTGN+P S+G+L+ L  +H   N LSG+I +S++NC  L +LD   
Sbjct: 717  SWQSLTAINLSNNKFTGNIPKSIGTLSFLESVHFANNDLSGDIPLSIQNCRKLFTLDFSG 776

Query: 683  NEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCI 742
            N+ VG IP+WIG+    M++LILR NK HG +P  +C +A LQILD+ADNN S  IP+C 
Sbjct: 777  NKLVGKIPSWIGKSIPDMIILILRGNKLHGQIPEEICRMASLQILDLADNNFSSMIPSCF 836

Query: 743  NNLTGMVTA----CSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMID 798
            +N +GMV       S T       P P     IL++ A +V KG + +Y  IL  V+ ID
Sbjct: 837  SNFSGMVKVNDSFGSLTFDQSNVGPSP-----ILIDSAILVIKGRVAEYSTILGFVKAID 891

Query: 799  ISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPE 858
            +S NN SG+IP+ +T+L  LQSL+FS NS TGRIP+ IG M+SLESIDFS N L GEIPE
Sbjct: 892  LSNNNLSGEIPMNITSLVGLQSLSFSQNSLTGRIPKDIGAMQSLESIDFSQNHLFGEIPE 951

Query: 859  SMSSLTFLNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLCGAPLPKNCTENVSISEDE 918
            S+SSLTFL+HLNLSNN LTGKIPS TQL+ FD SSF  NDLCG PLP NC++   +   +
Sbjct: 952  SISSLTFLSHLNLSNNKLTGKIPSGTQLRGFDPSSFMDNDLCGPPLPLNCSKEGILHAPD 1011

Query: 919  NGDEDED-----EVDHWLY--VSAALGFVVGFWCFMGPLLVRRRWRYKYYHSLNRLGDR 970
            +  E E+     EVD W Y  VS A GFVVGFW  +GPL   RRWR+ Y+  L  L D+
Sbjct: 1012 DEKEREEDENGFEVD-WFYFFVSIAPGFVVGFWLVVGPLCFNRRWRFAYFRFLYDLWDK 1069

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284769|gb|AEQ27756.1| receptor-like protein [Malus x domestica]

 Score =  767 bits (1980), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/1032 (44%), Positives = 619/1032 (59%), Gaps = 90/1032 (8%)

Query: 15   LLLFEILAIATI--SISFCNGS-SYHVGCLGSEKEALLSFKRDLKDPSNRLASWSG--NG 69
            LLL   LA ATI  SI+ CNG+  +   C  SE++ALL FK+DLKDP+NRLASW    + 
Sbjct: 9    LLLIRFLAFATITFSIALCNGNPGWPPLCKESERQALLMFKQDLKDPANRLASWVAEEDS 68

Query: 70   DCCAWAGVFCDNITGHVLHLDLRNPFNYHKESEYEAIRRTALVGKINPSLLDLKHLSYLD 129
            DCC+W GV CD+ITGH+  L L N   Y          +++  G+INPSLL LKHL+YLD
Sbjct: 69   DCCSWTGVVCDHITGHIHELHLNNTDRYFG-------FKSSFGGRINPSLLSLKHLNYLD 121

Query: 130  LSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLY--- 186
            LS+N+F   QIP FFGSM +L +LNL +++  G+IPH LGNLS+L++L+L+S++  Y   
Sbjct: 122  LSYNNFSTTQIPSFFGSMTSLTHLNLGQSKFYGIIPHKLGNLSSLRYLNLNSSFNFYRST 181

Query: 187  --VDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATA 244
              V+N  W+SGLS L+HLDL  VNLSKA DWL VTN LPSLVEL ++ C+L+    L T 
Sbjct: 182  LQVENLQWISGLSLLKHLDLSYVNLSKASDWLQVTNMLPSLVELYMSECELYQIPPLPTP 241

Query: 245  NFSSLTVLDLSDNQFD----KWF------------------------------------- 263
            NF+SL VLDLSDN F+    +W                                      
Sbjct: 242  NFTSLVVLDLSDNLFNSLMPRWVFSLKNLVSLRLIDCDFRGPIPSISQNITSLREIDLSL 301

Query: 264  -------IPSWVF---------------GPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLY 301
                   IP W+F               G +PR +QN+T L+ L L  N FNS+IP WLY
Sbjct: 302  NSISLDPIPKWLFTQKFLELSLESNQLTGQLPRSIQNMTGLKVLDLGGNDFNSTIPEWLY 361

Query: 302  RFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNL 361
               +LE L L +N+L+G I S ++GN+TS+  L L  N+ +EG+IP S+  LC LK ++L
Sbjct: 362  SLTNLESLLLFDNALRGEI-SSSIGNMTSLVNLHLDNNL-LEGKIPNSLGHLCKLKVVDL 419

Query: 362  RGVHLS-QEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIV 420
               H + Q  SEI +  S C  +G++SL LR  +I G +   LG   ++  LD + N   
Sbjct: 420  SENHFTVQRPSEIFESLSRCGPDGIKSLSLRYTNIAGPIPISLGNLSSLEKLDISVNQFN 479

Query: 421  GLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPF 480
            G   E +GQL  L  L I+ N   G +S + F+NLTKL +F  +GN LTL    DW+PPF
Sbjct: 480  GTFTEVVGQLKMLTDLDISYNLFEGVVSEVSFSNLTKLKYFNANGNSLTLKTSRDWVPPF 539

Query: 481  QLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQ 540
            QL +L L + ++G  +P+WL +Q  L++L L  + IS   P  F    SQL +L+L  NQ
Sbjct: 540  QLESLQLDSWHLGPEWPMWLQTQPQLKYLSLSGTGISSTIPTWFWNLTSQLGYLNLSHNQ 599

Query: 541  IHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVF-LDLSNNLFSGSISPFLCYRINE 599
            ++G I N+      L+  + SN  +G LP+++++L+F LDLSN+ FSGS+  F C R +E
Sbjct: 600  LYGEIQNIVAGRNSLV-DLGSNQFTGVLPIVATSLLFWLDLSNSSFSGSVFHFFCDRPDE 658

Query: 600  TKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGEN 659
             K L  L L +N L G++PDCWMS+Q+L  L L NN  +GN+P SMG L  L  LHL  N
Sbjct: 659  PKRLIFLFLGNNSLTGKVPDCWMSWQHLLFLNLENNNLSGNVPMSMGYLQDLRSLHLRNN 718

Query: 660  RLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLC 719
             L G +  SL+NCT L  +D+G N FVG+IP W+G   S + +L LRSN+F G +P+ +C
Sbjct: 719  HLYGELPHSLQNCTRLSVVDLGGNGFVGSIPIWMGTSLSELKILNLRSNEFEGDIPSEIC 778

Query: 720  DLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVV 779
             L  L++LD+A N LSG +P C +NL+ M    S +    QY+    D G  + + A +V
Sbjct: 779  YLKSLRMLDLARNKLSGRLPRCFHNLSAMAD-LSGSFWFPQYVTGVSDEGFTIPDYAVLV 837

Query: 780  SKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVM 839
            +KG+ ++Y   L  V+ +D+S N   G+IP E+T L  LQSLN S N FTGRIP  IG M
Sbjct: 838  TKGKELEYTKNLKFVKSMDLSCNFMYGEIPEELTGLLTLQSLNLSNNRFTGRIPSKIGNM 897

Query: 840  RSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDL 899
              LES+DFS NQL GEIP SM +L FL+HLNLS NNL G+IP STQLQS D SSF GN+L
Sbjct: 898  AQLESLDFSMNQLDGEIPPSMKNLAFLSHLNLSYNNLRGRIPESTQLQSLDQSSFVGNEL 957

Query: 900  CGAPLPKNCTENVSIS----EDENGDEDEDEVDHWLYVSAALGFVVGFWCFMGPLLVRRR 955
            CGAPL KNC+ N  +     E + G       D W YVS  +GF  GFW  +G LLV   
Sbjct: 958  CGAPLNKNCSANGVVPPPTVEQDGGGGYRLLEDKWFYVSLGVGFFTGFWIVLGSLLVNMP 1017

Query: 956  WRYKYYHSLNRL 967
            W       LNR+
Sbjct: 1018 WSILLSQLLNRI 1029

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209970609|gb|ACJ03067.1| AL07-2p [Malus floribunda]

 Score =  759 bits (1960), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/1033 (45%), Positives = 621/1033 (60%), Gaps = 92/1033 (8%)

Query: 15   LLLFEILAIATI--SISFCNGS-SYHVGCLGSEKEALLSFKRDLKDPSNRLASWSG--NG 69
            LLL   LA ATI  SI+ CNG+  +   C  SE++ALL FK+DLKDP+NRLASW    + 
Sbjct: 9    LLLIRFLAFATITFSIALCNGNPGWPPLCKESERQALLMFKQDLKDPANRLASWVAEEDS 68

Query: 70   DCCAWAGVFCDNITGHVLHLDLRNPFNYHKESEYEAIRRTALVGKINPSLLDLKHLSYLD 129
            DCC+W GV CD+ITGH+  L L N   Y          +++  GKINPSLL LKHL+YLD
Sbjct: 69   DCCSWTGVVCDHITGHIHELHLNNTDRYFG-------FKSSFGGKINPSLLSLKHLNYLD 121

Query: 130  LSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLY--- 186
            LS+N+F+  QIP FFGSM +L +LNL  ++  G+IPH LGNLS+L++L+L+S+Y  Y   
Sbjct: 122  LSYNNFRTTQIPSFFGSMTSLTHLNLGHSKFYGIIPHKLGNLSSLRYLNLNSSYNFYRST 181

Query: 187  --VDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATA 244
              V+N  W+SGLS L+HLDL  VNLSKA DWL VTN LPSLVEL ++ C+L     L T 
Sbjct: 182  LQVENLQWISGLSLLKHLDLSWVNLSKASDWLQVTNMLPSLVELHMSACELDQIPPLPTP 241

Query: 245  NFSSLTVLDLSDNQFD----KWF------------------------------------- 263
            NF+SL VLDLS+N F+    +W                                      
Sbjct: 242  NFTSLVVLDLSENFFNSLMPRWVFSLKNLVSLRLTHCDFQGPIPSISQNITSLREIDLSS 301

Query: 264  -------IPSWVF---------------GPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLY 301
                   IP W+F               G +PR +QN+T L+ L L  N FNS+IP WLY
Sbjct: 302  NSISLDPIPKWLFTQKFLELSLESNQLTGQLPRSIQNMTGLKTLNLGGNEFNSTIPEWLY 361

Query: 302  RFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNL 361
               +LE L L NN L+G I S ++GN+TS+  L L  N+ +EG+IP S+  LC LK ++L
Sbjct: 362  SLNNLESLLLFNNDLRGEI-SSSIGNMTSLVNLHLDNNL-LEGKIPNSLGHLCKLKVVDL 419

Query: 362  RGVHLSQ-EISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIV 420
               H +    SEI +  S C  +G++SL LR  +I G +   LG   ++  LD + N   
Sbjct: 420  SENHFTVLRPSEIFESLSRCGPDGIKSLSLRYTNIAGPIPISLGNLSSLEKLDISVNQFN 479

Query: 421  GLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPF 480
            G   E +GQL  L  L I+ N   G +S + F+NLTKL +F  +GN LTL    DW+PPF
Sbjct: 480  GTFIEVVGQLKMLTDLDISYNLFEGVVSEVSFSNLTKLKYFNANGNSLTLKTSRDWVPPF 539

Query: 481  QLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQ 540
            QL +L L + ++G  +P+WL +Q  L +L L  + IS   P  F    SQL +L+L  NQ
Sbjct: 540  QLESLQLDSWHLGPEWPMWLQTQPQLNYLSLSGTGISSTIPTWFWNLTSQLGYLNLSHNQ 599

Query: 541  IHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLV-FLDLSNNLFSGSISPFLCYRINE 599
            ++G I N+      L+  + SN  +G LP+++++L+ +LDLSN+ FSGS+  F C R +E
Sbjct: 600  LYGEIQNIVAGRNSLV-DLGSNQFTGVLPIVATSLLLWLDLSNSSFSGSVFHFFCDRPDE 658

Query: 600  TKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGEN 659
             K L  L L +N L G++PDCWMS+Q+L  L L NN  TGN+P SMG L  L  LHL  N
Sbjct: 659  PKRLIFLFLGNNSLTGKVPDCWMSWQHLLFLNLENNNLTGNVPMSMGYLQDLRSLHLRNN 718

Query: 660  RLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLC 719
             L G +  SL+NCT L  +D+G N FVG+IP W+G   S + +L LRSN+F G +P+ +C
Sbjct: 719  HLYGELPHSLQNCTNLAVVDLGGNGFVGSIPIWMGTSLSELKILNLRSNEFEGDIPSEIC 778

Query: 720  DLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVV 779
             L  LQILD+A N LSG IP C +NL+ M    S +    QY+    D G  + +   +V
Sbjct: 779  YLKSLQILDLARNKLSGTIPRCFHNLSAMAD-LSGSFWFPQYVTGVSDEGFTIPDYVVLV 837

Query: 780  SKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVM 839
            +KG+ ++Y  IL  V+ +D+S N   G+IP E+T+L ALQSLN S N FTGRIP  IG M
Sbjct: 838  TKGKEMEYTKILKFVKFMDLSCNFMYGEIPEELTDLLALQSLNLSNNRFTGRIPSKIGNM 897

Query: 840  RSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDL 899
              LES+DFS NQL G+IP SM+ LTFL++LNLSNNNL G+IP STQLQS D SSF GN+L
Sbjct: 898  AQLESLDFSMNQLDGQIPPSMTILTFLSYLNLSNNNLRGRIPESTQLQSLDQSSFVGNEL 957

Query: 900  CGAPLPKNCTEN-----VSISEDENGDEDEDEVDHWLYVSAALGFVVGFWCFMGPLLVRR 954
            CGAPL KNC+ N      ++ +D  G     E D W YVS  +GF  GFW  +G LLV  
Sbjct: 958  CGAPLNKNCSANGVMPPPTVEQDGGGGYRLLE-DKWFYVSLGVGFFTGFWIVLGSLLVNM 1016

Query: 955  RWRYKYYHSLNRL 967
             W       LNR+
Sbjct: 1017 PWSILLSQLLNRI 1029

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209970603|gb|ACJ03064.1| AM19-5p [Malus floribunda]

 Score =  755 bits (1949), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/1035 (44%), Positives = 620/1035 (59%), Gaps = 100/1035 (9%)

Query: 15   LLLFEILAIATISISF--CNGS-SYHVGCLGSEKEALLSFKRDLKDPSNRLASWSG--NG 69
            LL+  + AIATI+ SF  CNG+  +   C  SE++ALL FK+DLKDP+NRL+SW    + 
Sbjct: 10   LLIRFLAAIATITFSFGLCNGNPDWPPLCKDSERQALLMFKQDLKDPANRLSSWVAEEDS 69

Query: 70   DCCAWAGVFCDNITGHV--LHLDLRNPFNYHKESEYEAIRRTALVGKINPSLLDLKHLSY 127
            DCC+W GV CD+ITGH+  LHL+  N F+++  S +         GKINPSLL LKHL+Y
Sbjct: 70   DCCSWTGVVCDHITGHIHELHLNSSN-FDWYINSFFG--------GKINPSLLSLKHLNY 120

Query: 128  LDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNY--LL 185
            LDLS NDF   QIP FFGSM +L +LNL  +   G+IPH+LGNLS+L++L+LSS Y   L
Sbjct: 121  LDLSNNDFSSTQIPSFFGSMTSLTHLNLGTSEFDGIIPHNLGNLSSLRYLNLSSLYGPRL 180

Query: 186  YVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATAN 245
             V+N  W++GLS L+HLDL  VNLSKA DWL VTN LPSLVEL + +CQL   + L T N
Sbjct: 181  KVENLQWIAGLSLLKHLDLSYVNLSKASDWLQVTNMLPSLVELIMLDCQLDQIAPLPTPN 240

Query: 246  FSSLTVLDLSDNQFD----KW--------------------------------------- 262
            F+SL VLDLS N F+    +W                                       
Sbjct: 241  FTSLVVLDLSINFFNSLMPRWVFSLKNLVSLHISDCGFQGPIPSISENITSLREIDLSFN 300

Query: 263  -----FIPSWVF---------------GPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYR 302
                  IP W+F               G +P  +QN+T L  L L+ N FNS+IP WLY 
Sbjct: 301  YISLDLIPKWLFNQKFLKLSLEQNQLIGQLPSSIQNMTGLTTLNLEGNKFNSTIPEWLYN 360

Query: 303  FIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLR 362
              +LE L LS+N+ +G I S ++GN+TS+  L L  N+ +EG+IP S+  LC LK L+L 
Sbjct: 361  LNNLESLILSSNAFRGEI-SSSIGNMTSLVNLHLDNNL-LEGKIPNSLGHLCKLKVLDLS 418

Query: 363  GVHLS-QEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVG 421
              H + +  SE+ +  S C  +G++SL LR  +I G +   LG   ++  LD + N   G
Sbjct: 419  ENHFTVRRPSEMFESLSRCGPHGIKSLSLRYTNISGPIPMSLGNLSSLEKLDISINQFDG 478

Query: 422  LIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQ 481
               E +GQL  L  L I+ N L G +S   F+NLTKL  F  +GN  T     DW+PPFQ
Sbjct: 479  TFTEVIGQLKMLTDLDISYNSLEGAVSEAFFSNLTKLKHFIANGNSFTWKTSRDWLPPFQ 538

Query: 482  LVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQI 541
            L +L L + ++G  +P+WL +Q  L  L L  + IS   P  F    SQ+K+L+L  NQ+
Sbjct: 539  LESLQLDSWHLGPEWPMWLQTQTQLTDLSLSGTGISSAIPTWFWNLTSQVKYLNLSYNQL 598

Query: 542  HGPIPNL--TEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINE 599
            +G I N+   +++   ++ + SN  +G LP++ ++L +LDLSN+ FSGS+  F C R  E
Sbjct: 599  YGEIQNIFVAQYS---LVDLSSNRFTGSLPIVPASLWWLDLSNSSFSGSVFHFFCDRTYE 655

Query: 600  TKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGEN 659
             K+   L L +N L+G++PDCWM++Q L+ L L NN  TGN+P S+G L  L  LHL  N
Sbjct: 656  LKTTYVLDLGNNLLSGKIPDCWMNWQELEVLNLENNHLTGNVPMSLGYLQRLRSLHLRNN 715

Query: 660  RLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLC 719
             L G +  SL+NCT+L  LD+G N FVG+IP WIG+  S + +L LRSN+F G +P  +C
Sbjct: 716  HLDGELPHSLQNCTSLSILDLGGNGFVGSIPIWIGKSLSELQILNLRSNEFKGDIPYEVC 775

Query: 720  DLAFLQILDIADNNLSGAIPNCINNLTGM-VTACSFTRSVQQYLPLPIDVGVI-LVEKAS 777
             L  LQILD+A N LSG    C +NL+ M + + SF+ +  Q        G    +E A 
Sbjct: 776  YLKSLQILDLARNKLSGTTSRCFHNLSAMAILSESFSPTTFQMWS---SAGSFSFLENAI 832

Query: 778  VVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIG 837
            +V+KG  ++Y  IL  V+ +D+S N  SG+IP  +T++ ALQSLN S N FTGRIP  IG
Sbjct: 833  LVTKGREMEYSKILGFVKSMDLSCNFLSGEIPEGLTSVLALQSLNLSNNRFTGRIPSKIG 892

Query: 838  VMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGN 897
             M  LES+DFS N+L G IP SM++LTFL++LNLS NNLTG+IP STQLQSF+ SSF GN
Sbjct: 893  NMVRLESLDFSMNELHGGIPPSMTTLTFLSYLNLSYNNLTGRIPESTQLQSFNQSSFVGN 952

Query: 898  DLCGAPLPKNCTEN-----VSISEDENGDEDEDEVDHWLYVSAALGFVVGFWCFMGPLLV 952
            +LCG PL  NC+ N       + +D  G     E D W YVS  LGF  GFW  +G LLV
Sbjct: 953  ELCGRPLNNNCSANGVKPPPKVEQDGGGGYYLLE-DKWFYVSLGLGFFTGFWIVLGSLLV 1011

Query: 953  RRRWRYKYYHSLNRL 967
               W       LNR+
Sbjct: 1012 NMPWSMLLSGLLNRI 1026

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284739|gb|AEQ27741.1| receptor-like protein [Malus x domestica]

 Score =  752 bits (1942), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/998 (46%), Positives = 598/998 (59%), Gaps = 85/998 (8%)

Query: 15  LLLFEILAIATISISF--CNGS-SYHVGCLGSEKEALLSFKRDLKDPSNRLASWSG--NG 69
           LLL   LA ATI+ SF  CNG+  +   C  SE+ ALL FK+DLKDP+NRLASW    + 
Sbjct: 9   LLLIRFLAFATITFSFGLCNGNPGWPPLCKESERRALLMFKQDLKDPANRLASWVAEEDS 68

Query: 70  DCCAWAGVFCDNITGHVLHLDLRNPFNYHKESEYEAIRRTALVGKINPSLLDLKHLSYLD 129
           DCC+W  V CD++TGH+  L L N F    +S++E    +   GKINPSLL LKHL+YLD
Sbjct: 69  DCCSWTRVVCDHVTGHIHELHL-NSF----DSDWEF--NSFFGGKINPSLLSLKHLNYLD 121

Query: 130 LSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDN 189
           LS N+FQG QIP FFGSM +L +LNL+ +  GG+IPH LGNL++L++L+LSS   L V+N
Sbjct: 122 LSNNNFQGTQIPSFFGSMTSLTHLNLAHSWYGGIIPHKLGNLTSLRYLNLSSLDDLKVEN 181

Query: 190 FWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSL 249
             W+SGLS L+HLDL  VNLSKA DWL VTN LPSLVEL ++ CQL     L T NF+SL
Sbjct: 182 PQWISGLSLLKHLDLSWVNLSKASDWLQVTNMLPSLVELIMSRCQLDQIPPLPTPNFTSL 241

Query: 250 TVLDLSDNQFDKWFIPSWVF----------------GPIPRGLQNLTSLRHLGLDSNHFN 293
            VLDLS N F+   +P WVF                GPIP   QN+TSLR + L  N  +
Sbjct: 242 VVLDLSRNSFNS-LMPRWVFSLKNLVSLHLSFCGFQGPIPSISQNITSLREIDLSFNSIS 300

Query: 294 -SSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMAS 352
              IP WL+    LE LSL +N L G                          ++P S+ +
Sbjct: 301 LDPIPKWLFNQKILE-LSLESNQLTG--------------------------QLPSSIQN 333

Query: 353 LCNLKSLNLRGVHLSQEISEIL-------------DIFSGCVSNGLESL------DLRSD 393
           +  LK LNL G   +  I E L             + F G +S+ + +L      DL S+
Sbjct: 334 MTGLKVLNLEGNDFNSTIPEWLYSLNNLESLLLSYNYFCGEISSSIGNLKSLRHFDLSSN 393

Query: 394 SIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFA 453
           SI G +   LG   ++  LD + N + G   E +GQL  L  L I+ N L G +S + F+
Sbjct: 394 SISGPIPMSLGNLSSLEKLDISGNQLNGTFIEVIGQLKMLMDLDISYNSLEGAMSEVSFS 453

Query: 454 NLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVN 513
           NLTKL  F  +GN  TL    DW+PPFQL  L L + ++G ++P+WL +Q  L+ L L  
Sbjct: 454 NLTKLKHFIANGNSFTLKTSRDWVPPFQLEILQLDSWHLGPKWPMWLRTQTQLKELSLSG 513

Query: 514 SSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISS 573
           + IS   P  F    SQ+++L+L +NQ++G I N+        + + SN  +G LP++ +
Sbjct: 514 TGISSTIPTWFWNLTSQVEYLNLSRNQLYGQIQNIVAVP-FSTVDLSSNQFTGALPIVPT 572

Query: 574 NLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLS 633
           +L++LDLSN+ FSGS+  F C R +E + L  L L +N L G++PDCWMS+Q+L  L L 
Sbjct: 573 SLMWLDLSNSSFSGSVFHFFCDRPDEPRKLGILHLGNNSLTGKVPDCWMSWQSLSFLNLE 632

Query: 634 NNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWI 693
           NN  TGN+P SMG L  +  L+L  N L G +  SL+NCT+L  +D+ EN F G+IPTWI
Sbjct: 633 NNNLTGNVPMSMGYLLYIQSLYLRNNHLYGELPHSLQNCTSLSVVDLSENGFSGSIPTWI 692

Query: 694 GERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACS 753
           G+  S + VLILRSNKF G +P  +C L  LQILD+A N LSG IP C +NL+ +    S
Sbjct: 693 GKSLSLLNVLILRSNKFEGDIPNEVCYLTSLQILDLAHNKLSGMIPRCFHNLSALANF-S 751

Query: 754 FTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVT 813
            + S   Y     +V   L E A +V+KG  ++Y  IL  V+ +D+S N   G+IP E+T
Sbjct: 752 ESFSPTSYWG---EVASGLTENAILVTKGIEMEYSTILGFVKGMDLSCNFMYGEIPEELT 808

Query: 814 NLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSN 873
            L ALQSLN S N FTGRIP  IG M  LES+DFS NQL GEIP SM+ LTFL+HLNLS 
Sbjct: 809 GLLALQSLNLSNNRFTGRIPSKIGNMAQLESLDFSMNQLDGEIPPSMTILTFLSHLNLSY 868

Query: 874 NNLTGKIPSSTQLQSFDVSSFAGNDLCGAPLPKNCTENVSIS----EDENGDEDEDEVDH 929
           NNLTG+IP STQLQS D SSF GN+LCGAPL KNC+EN  I     E + G       D 
Sbjct: 869 NNLTGRIPESTQLQSLDQSSFVGNELCGAPLNKNCSENGVIPPPTVEHDGGGGYSLLEDE 928

Query: 930 WLYVSAALGFVVGFWCFMGPLLVRRRWRYKYYHSLNRL 967
           W YVS  +GF  GFW  +G LLV   W       LNR+
Sbjct: 929 WFYVSLGVGFFTGFWMVLGSLLVNMPWSILLSQLLNRI 966

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284767|gb|AEQ27755.1| receptor-like protein [Malus sieversii]

 Score =  751 bits (1939), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/981 (46%), Positives = 601/981 (61%), Gaps = 64/981 (6%)

Query: 15  LLLFEILAIATI--SISFCNGS-SYHVGCLGSEKEALLSFKRDLKDPSNRLASWSG--NG 69
           LLL   LAIATI  SI   NG+  +   C  SE++ALL FK+DLKDP+NRLASW    + 
Sbjct: 9   LLLIRFLAIATITFSIGLSNGNPGWPPLCKESERQALLMFKQDLKDPTNRLASWVAEEHS 68

Query: 70  DCCAWAGVFCDNITGHVLHLDLRNPFNYHKESEYEAIRRTALVGKINPSLLDLKHLSYLD 129
           DCC+W GV CD+ITGHV  L L + ++   +S       +   GKINPSLL LKHL++LD
Sbjct: 69  DCCSWTGVVCDHITGHVHKLHLNSSYHSFWDS------NSFFGGKINPSLLSLKHLNHLD 122

Query: 130 LSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYL--LYV 187
           LS N+F   QIP FFGSM +L +LNL+     G+IPH LGNLS+L++L+LS+ Y   L V
Sbjct: 123 LSNNNFSTTQIPSFFGSMTSLTHLNLANLEFYGIIPHKLGNLSSLRYLNLSNIYSPNLKV 182

Query: 188 DNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFS 247
           +N  W+SGLS L+HLDL SVNL+KAFDWL VTN LPSLVEL +++CQL     L T NF+
Sbjct: 183 ENLQWISGLSLLKHLDLSSVNLNKAFDWLQVTNMLPSLVELIMSDCQLVQIPHLPTPNFT 242

Query: 248 SLTVLDLSDNQFDKWFIPSWVF----------------GPIPRGLQNLTSLRHLGLDSNH 291
           SL VLDLS N F+   +  WVF                GPIP   QN+T L+ L L  N 
Sbjct: 243 SLVVLDLSVNNFNSLML-KWVFSLKNLVSLHLNDCGFQGPIPSISQNMTCLKVLSLLEND 301

Query: 292 FNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMA 351
           FNS+IP WLY   +LE L LS N L G I S ++GN+TS+  LDL+ N  +EG+IP S+ 
Sbjct: 302 FNSTIPEWLYSLNNLESLLLSYNGLHGEISS-SIGNMTSLVNLDLNYNQ-LEGKIPNSLG 359

Query: 352 SLCNLKSLNLRGVHLS-QEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIV 410
            LC LK L+L   H + Q  SEI +  S C  +G++SL LR                   
Sbjct: 360 HLCKLKVLDLSKNHFTVQRPSEIFESLSRCGPDGIKSLSLR------------------- 400

Query: 411 TLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTL 470
                N +I G IP SLG +S L  L I+ N L G +S + F+ LTKL  F   GN LTL
Sbjct: 401 -----NTNISGPIPMSLGNVSNLEKLDISYNSLEGAVSEVSFSKLTKLKHFIAKGNSLTL 455

Query: 471 GVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQ 530
               DW+PPFQL  L L + ++G ++P+WL +Q  L+ L L  + IS   P  F    S+
Sbjct: 456 KTSQDWVPPFQLEILQLDSWHLGPKWPMWLRTQTQLKELSLFGTGISSTIPTWFWNLTSK 515

Query: 531 LKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSIS 590
           +++L+L  NQ++G I N+        + + SN   G LP++ ++L++LDLSN+ FSGS+ 
Sbjct: 516 VQYLNLSHNQLYGEIQNIV-VAPYSFVDLGSNQFIGALPIVPTSLLWLDLSNSSFSGSVF 574

Query: 591 PFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTS 650
            F C R +E + L+ L L +N L G++PDCW ++   + L L NN  TGN+P SMG L  
Sbjct: 575 HFFCDRPDEPRLLHFLLLGNNLLTGKVPDCWANWSFFEFLNLENNHLTGNVPMSMGYLPM 634

Query: 651 LVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKF 710
           L  LHL  N L G +  SL+NCT+LE +D+  N FVG+I  W+G+    + +L LRSN+F
Sbjct: 635 LESLHLHNNHLYGELPHSLQNCTSLEVVDLSGNGFVGSIQIWMGKSLPWLSLLNLRSNEF 694

Query: 711 HGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGV 770
            G +P+ +C L  LQILD+A N LSG IP C +NL+ M     F     ++  +  D+  
Sbjct: 695 EGDIPSEICYLKSLQILDLAHNKLSGTIPRCFHNLSAMADVSEFFLPTSRF--IISDMAH 752

Query: 771 ILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTG 830
            ++E A +V+KG+ ++Y  IL  V+ +D+S N   G+IP E+T L ALQSLN S N FTG
Sbjct: 753 TVLENAILVTKGKEMEYSKILKFVKNLDLSCNFMYGEIPEELTGLLALQSLNLSNNRFTG 812

Query: 831 RIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSSTQLQSFD 890
           + P  IG M  LES+DFS NQL GEIP S+++LTFLNHLNLS NNLTG+IP  TQLQS D
Sbjct: 813 KFPSKIGNMAQLESLDFSMNQLDGEIPPSITNLTFLNHLNLSYNNLTGRIPEGTQLQSLD 872

Query: 891 VSSFAGNDLCGAPLPKNCTENVSIS----EDENGDEDEDEVDHWLYVSAALGFVVGFWCF 946
            SSF GN+LCGAPL KNC+EN  I     E + G       D W YVS  +GF  GFW  
Sbjct: 873 QSSFVGNELCGAPLNKNCSENGVIPPPTVEHDGGGGYSLLEDEWFYVSLGVGFFTGFWIV 932

Query: 947 MGPLLVRRRWRYKYYHSLNRL 967
           +G LLV   W       LNR+
Sbjct: 933 LGSLLVNMPWSILLSQLLNRI 953

Source: Malus sieversii

Species: Malus sieversii

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	979
TAIR|locus:2044767	905	AT2G34930 "AT2G34930" [Arabido	0.883	0.955	0.344	4.5e-114
TAIR|locus:2205005	1019	RLP7 "AT1G47890" [Arabidopsis	0.924	0.888	0.288	2.6e-79
TAIR|locus:2137296	811	RLP46 "receptor like protein 4	0.651	0.786	0.310	9.3e-75
TAIR|locus:2055772	983	RLP19 "receptor like protein 1	0.870	0.866	0.289	1.2e-74
TAIR|locus:2825762	994	RLP6 "AT1G45616" [Arabidopsis	0.916	0.902	0.280	1.6e-72
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.796	0.624	0.302	5.3e-67
TAIR|locus:2129246	891	RLP50 "receptor like protein 5	0.774	0.850	0.305	1.7e-66
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.798	0.829	0.294	1e-65
TAIR|locus:2119430	741	RLP47 "receptor like protein 4	0.680	0.898	0.301	1.5e-65
TAIR|locus:2156349	1252	GSO2 "GASSHO 2" [Arabidopsis t	0.781	0.611	0.300	4.3e-65

TAIR|locus:2044767 AT2G34930 "AT2G34930" [Arabidopsis thaliana (taxid:3702)]

 Score = 1125 (401.1 bits), Expect = 4.5e-114, P = 4.5e-114
 Identities = 318/922 (34%), Positives = 461/922 (50%)

Query:    18 FEILAIATISISFCNGSSYHVGCLGSEKEALLSFKRDLKDPSNRLASWSGNGDCCAWAGV 77
             F IL +   ++++  GS+    C+ +E++ALL+F+  L D S+RL SWSG  DCC W GV
Sbjct:    13 FLILILLLKNLNY--GSAASPKCISTERQALLTFRAALTDLSSRLFSWSGP-DCCNWPGV 69

Query:    78 FCDNITGHVLHLDLRNPFNYHKESEYEAIRRTALVGKINPXXXXXXXXXXXXXXFNDFQG 137
              CD  T HV+ +DLRNP    +  EY   +R +L GKI+P               NDF  
Sbjct:    70 LCDARTSHVVKIDLRNPSQDVRSDEY---KRGSLRGKIHPSLTQLKFLSYLDLSSNDFNE 126

Query:   138 IQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDL-------SSNYLLYVDNF 190
             ++IP F G + +LRYLNLS +   G IP  LGNLS L+ LDL       S    L   N 
Sbjct:   127 LEIPEFIGQIVSLRYLNLSSSSFSGEIPTSLGNLSKLESLDLYAESFGDSGTLSLRASNL 186

Query:   191 WWLSGLSF-LEHLDLRSVNLSKAFD-WLMVTNKLPSLVELRLANCQLHHF--SLLATANF 246
              WLS LS  L++L++  VNLS A + WL   +++ +L EL L N +L +   +L ++A+ 
Sbjct:   187 RWLSSLSSSLKYLNMGYVNLSGAGETWLQDFSRISALKELHLFNSELKNLPPTLSSSADL 246

Query:   247 SSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHL 306
               L VLDLS+N  +   IP+W+FG        LT+LR L L  +    SIP        L
Sbjct:   247 KLLEVLDLSENSLNSP-IPNWLFG--------LTNLRKLFLRWDFLQGSIPTGFKNLKLL 297

Query:   307 EYLSLSNN-SLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVH 365
             E L LSNN +LQG I S  LG+L  + +LDLS N  + G+I   + +    K  +L  + 
Sbjct:   298 ETLDLSNNLALQGEIPS-VLGDLPQLKFLDLSANE-LNGQIHGFLDAFSRNKGNSLVFLD 355

Query:   366 LSQ-EISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIP 424
             LS  +++  L    G + N L++LDL S+S  G +   +G   ++  LD +NN++ G I 
Sbjct:   356 LSSNKLAGTLPESLGSLRN-LQTLDLSSNSFTGSVPSSIGNMASLKKLDLSNNAMNGTIA 414

Query:   425 ESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGN---KLTLGVKHDWIPPFQ 481
             ESLGQL+ L  L +  N   G L   HF NL  L   R+       L   +   WIPPF+
Sbjct:   415 ESLGQLAELVDLNLMANTWGGVLQKSHFVNLRSLKSIRLTTEPYRSLVFKLPSTWIPPFR 474

Query:   482 LVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKS-ASQLKFLDLGQNQ 540
             L  + + NC +G  FP+WL  Q  L F+ L N+ I D  P  +    +S++ +L L  N+
Sbjct:   475 LELIQIENCRIGL-FPMWLQVQTKLNFVTLRNTGIEDTIPDSWFSGISSKVTYLILANNR 533

Query:   541 IHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINET 600
             I G +P    F  L  + + SNN  G  PL S+N   L L  N FSGS+   +   +   
Sbjct:   534 IKGRLPQKLAFPKLNTIDLSSNNFEGTFPLWSTNATELRLYENNFSGSLPQNIDVLMPR- 592

Query:   601 KSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENR 660
               +  + L  N   G +P        L+ L L  N F+G+ P        L  + + EN 
Sbjct:   593 --MEKIYLFSNSFTGNIPSSLCEVSGLQILSLRKNHFSGSFPKCWHRQFMLWGIDVSENN 650

Query:   661 LSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCD 720
             LSG I  SL    +L  L + +N   G IP  +    S +  + L  NK  G LP+ +  
Sbjct:   651 LSGEIPESLGMLPSLSVLLLNQNSLEGKIPESL-RNCSGLTNIDLGGNKLTGKLPSWVGK 709

Query:   721 LAFLQILDIADNNLSGAIPN--C------INNLTGMVTACSFTRSVQQYLPLPIDVG-VI 771
             L+ L +L +  N+ +G IP+  C      I +L+G   +    + +     +       +
Sbjct:   710 LSSLFMLRLQSNSFTGQIPDDLCNVPNLRILDLSGNKISGPIPKCISNLTAIARGTNNEV 769

Query:   772 LVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGR 831
                   +V++    +YE I N    I++S NN SG+IP E+  L  L+ LN S NS  G 
Sbjct:   770 FQNLVFIVTRAR--EYEAIAN---SINLSGNNISGEIPREILGLLYLRILNLSRNSMAGS 824

Query:   832 IPESIGVMRSLESIDFSANQLSGEIPESMXXXXXXXXXXXXXXXXTGKIPSSTQLQSFDV 891
             IPE I  +  LE++D S N+ SG IP+S                  G IP   + Q  D 
Sbjct:   825 IPEKISELSRLETLDLSKNKFSGAIPQSFAAISSLQRLNLSFNKLEGSIPKLLKFQ--DP 882

Query:   892 SSFAGNDL-CGAPLPKNCTENV 912
             S + GN+L CG PLPK C +++
Sbjct:   883 SIYIGNELLCGKPLPKKCPKDI 904

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0005618 "cell wall" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP;IMP

TAIR|locus:2205005 RLP7 "AT1G47890" [Arabidopsis thaliana (taxid:3702)]

 Score = 797 (285.6 bits), Expect = 2.6e-79, P = 2.6e-79
 Identities = 286/990 (28%), Positives = 458/990 (46%)

Query:    20 ILAIATISISFCNGSSYHVGCLGSEKEALLSFKRDLKDPSNRLASWSGNGDCCAWAGVFC 79
             ++ I +  I+F + +  H+ C   +K+ALL FK +     ++  SW    DCC+W G+ C
Sbjct:    56 LILIPSFLITFVSATQ-HL-CHSDQKDALLDFKNEFGMVDSK--SWVNKSDCCSWDGITC 111

Query:    80 DNITGHVLHLDLRNPFNYHKESEYEAIRRTALVGKINPXXXXXXXXXXXXXXFNDFQGIQ 139
             D  +G+V+ LDL + F Y +     ++ +   +  +N                N+F    
Sbjct:   112 DAKSGNVIGLDLSSIFLYGQLKSNSSLFKLRHLRDLNLAN-------------NNFNNSP 158

Query:   140 IPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLS-GLSF 198
             IP  F  +  L  L+LS++ + G IP +L  L+ L  LDLSS+     ++F +LS   SF
Sbjct:   159 IPAEFDKLTGLERLDLSQSSLSGQIPINLLQLTKLVSLDLSSSDFFGDESFHYLSIDKSF 218

Query:   199 LEHLDLRSVNLSKA-FDWLMVTNKLP-------SLVELRLANCQLH-HF--SLLATANFS 247
             L  L     NL +    ++ +++++P       SL  L L  C L   F  S+L   N  
Sbjct:   219 LPLLARNLRNLRELDMSYVKISSEIPEEFSNIRSLRSLNLNGCNLFGEFPSSILLIPNLQ 278

Query:   248 SLTV---------LDL--SDNQFDKWFIPSWVF-GPIPRGLQNLTSLRHLGLDSNHFNSS 295
             S+ +         L +   +N   K  I    F G IP  + +L +L  L L  ++F+  
Sbjct:   279 SIDLGNNPNLRGNLPVFHENNSLLKLTILYTSFSGAIPDSISSLKNLTSLTLSVSYFSGK 338

Query:   296 IPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCN 355
             IP  L    HL +LSLS+N+L G I S ++GNL  ++   +  N  + G +P ++++L  
Sbjct:   339 IPFSLGNLSHLSHLSLSSNNLIGEIPS-SIGNLNQLTNFYVGGNK-LSGNLPATLSNLTK 396

Query:   356 LKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFA 415
             L +++L     +  +   +   S      L+      +   G +   L +  ++  +  +
Sbjct:   397 LNTISLSSNQFTGSLPPSISQLSK-----LKFFFADDNPFIGAILSPLLKIPSLTRIHLS 451

Query:   416 NNSIVGLIP-ES---LGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKL-TL 470
              N +  L+  E+   L  L T  +   N  K+   L    F++L +L    +    + T 
Sbjct:   452 YNQLNDLVGIENIFMLPNLETFYIYHYNYTKVR-PLDLNVFSSLKQLGTLYISRIPISTT 510

Query:   471 GVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQ 530
              +  D+  P  L  L LR+C + + FP ++   ++LQ L L N+ I    P  +L     
Sbjct:   511 NITSDF--PSNLEYLSLRSCNI-TDFPEFIRKGRNLQILDLSNNKIKGQVP-DWLWRMPT 566

Query:   531 LKFLDLGQNQIHGPIPNL--TEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGS 588
             L  +DL  N + G   ++  +  + L  + + SN   GPL L S +L +   SNN F+G 
Sbjct:   567 LNSVDLSNNSLSGFHVSVKASPESQLTSVDLSSNAFQGPLFLPSKSLRYFSGSNNNFTGK 626

Query:   589 ISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQN-LKTLKLSNNKFTGNLPYSMGS 647
             I   +C       SL  L L++N LNG LP C  +  + L  L L NN  +G+LP    +
Sbjct:   627 IPRSIC----GLSSLEILDLSNNNLNGSLPWCLETLMSSLSDLDLRNNSLSGSLPEIFMN 682

Query:   648 LTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRS 707
              T L  L +  NR+ G +  SL  C++LE L+VG N      P  +     ++ VL+L S
Sbjct:   683 ATKLRSLDVSHNRMEGKLPGSLTGCSSLEVLNVGSNRINDMFPFELNS-LQKLQVLVLHS 741

Query:   708 NKFHGPLPT--GLCDLAF--LQILDIADNNLSGAIPN-CINNLTGMVTACSFTRSVQ-QY 761
             NKFHG L    G+    F  LQI+D++ N+  G +P+    N T M  +     +++ +Y
Sbjct:   742 NKFHGTLHNVDGVW-FGFPQLQIIDVSHNDFFGILPSDYFMNWTAM--SSKKDNNIEPEY 798

Query:   762 LPLPIDVGVILVEKASVV--SKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQ 819
             +  P   G  L    S+V  SKG  ++ E +L +   ID+S N   GKIP  +  LK L+
Sbjct:   799 IQNPSVYGSSLGYYTSLVLMSKGVSMEMERVLTIYTAIDLSGNQLHGKIPDSIGLLKELR 858

Query:   820 SLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMXXXXXXXXXXXXXXXXTGK 879
              LN S N FTG IP S+  +++LES+D S N +SGEIP  +                 G 
Sbjct:   859 ILNMSSNGFTGHIPSSLANLKNLESLDISQNNISGEIPPELGTLSSLAWINVSHNQLVGS 918

Query:   880 IPSSTQLQSFDVSSFAGND-LCGAPLPKNC---TENVSISXXXXXXXXXXXXXHWLYVSA 935
             IP  TQ Q    SS+ GN  L G  L   C    E+                  + +++A
Sbjct:   919 IPQGTQFQRQKCSSYEGNPGLNGPSLENVCGHIKESTPTQTEPLETKEEEEEESFSWIAA 978

Query:   936 ALGFVVG--FWCFMGPLLV--RRRWRYKYY 961
              LGF  G  F   MG ++V  + +W  K +
Sbjct:   979 GLGFAPGVVFGLAMGYIVVSYKHQWFMKTF 1008

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2137296 RLP46 "receptor like protein 46" [Arabidopsis thaliana (taxid:3702)]

 Score = 754 (270.5 bits), Expect = 9.3e-75, P = 9.3e-75
 Identities = 211/680 (31%), Positives = 347/680 (51%)

Query:   247 SSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHL 306
             +SL  LD+S N   +  IP + F        NLTSL  L +  N FN SIP+ L+   +L
Sbjct:   105 NSLVGLDVSFNNI-QGEIPGYAF-------VNLTSLISLDMCCNRFNGSIPHELFSLTNL 156

Query:   307 EYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHL 366
             + L LS N + GT+  + +  L ++  L L  N+ I G IP  + SL  L +L LR    
Sbjct:   157 QRLDLSRNVIGGTLSGD-IKELKNLQELILDENL-IGGAIPSEIGSLVELLTLTLRQNMF 214

Query:   367 SQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPES 426
             +  I   +   +      L+++DL+++ +   + D +G   N+ TL  + N + G IP S
Sbjct:   215 NSSIPSSVSRLTK-----LKTIDLQNNFLSSKIPDDIGNLVNLSTLSLSMNKLSGGIPSS 269

Query:   427 LGQLSTLRVLRI-NDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWI-PPFQLVA 484
             +  L  L  L++ N+N L+G + A     L KL   R++GN       + ++ P F+L  
Sbjct:   270 IHNLKNLETLQLENNNGLSGEIPAAWLFGLQKLKVLRLEGNNKLQWNNNGYVFPQFKLTH 329

Query:   485 LGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGP 544
             L LR+C +    P WL +Q  L +L L  + +   FP ++L    +++ + L  N++ G 
Sbjct:   330 LSLRSCGLEGNIPDWLKNQTALVYLDLSINRLEGRFP-KWLADL-KIRNITLSDNRLTGS 387

Query:   545 IP-NLTEFTGLLILSVYSNNMSGPLP--LISSNLVFLDLSNNLFSGSISPFLCYRINETK 601
             +P NL +   L  L +  NN SG +P  +  S ++ L LS N FSGS+       I +  
Sbjct:   388 LPPNLFQRPSLYYLVLSRNNFSGQIPDTIGESQVMVLMLSENNFSGSVPK----SITKIP 443

Query:   602 SLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRL 661
              L  L L+ N L+GE P  +     L+ L +S+N+F+G++P   G  TS+  L + +N  
Sbjct:   444 FLKLLDLSKNRLSGEFPR-FRPESYLEWLDISSNEFSGDVPAYFGGSTSM--LLMSQNNF 500

Query:   662 SGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDL 721
             SG    + +N + L  LD+ +N+  G + + I +  S + VL LR+N   G +P G+ +L
Sbjct:   501 SGEFPQNFRNLSYLIRLDLHDNKISGTVASLISQLSSSVEVLSLRNNSLKGSIPEGISNL 560

Query:   722 AFLQILDIADNNLSGAIPNCINNLTGMV-----TACSFTRSVQQYLPLPIDVGVILVEKA 776
               L++LD+++NNL G +P+ + NLT M+     +A +       Y  +P    +I +E  
Sbjct:   561 TSLKVLDLSENNLDGYLPSSLGNLTCMIKSPEPSAMTIRPYFSSYTDIPNIERLIEIESE 620

Query:   777 SVVS------KGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTG 830
              + S        + V ++    L  ++D+S+N   G+IP  + NLK+L+ LN S N F+G
Sbjct:   621 DIFSLVVNWKNSKQVLFDRNFYLYTLLDLSKNKLHGEIPTSLGNLKSLKVLNLSNNEFSG 680

Query:   831 RIPESIGVMRSLESIDFSANQLSGEIPESMXXXXXXXXXXXXXXXXTGKIPSSTQLQSFD 890
              IP+S G +  +ES+D S N L+GEIP+++                 G+IP S QL   +
Sbjct:   681 LIPQSFGDLEKVESLDLSHNNLTGEIPKTLSKLSELNTLDLRNNKLKGRIPESPQLDRLN 740

Query:   891 VSS-FAGND-LCGAPLPKNC 908
               + +A N  +CG  +   C
Sbjct:   741 NPNIYANNSGICGMQIQVPC 760

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2055772 RLP19 "receptor like protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 753 (270.1 bits), Expect = 1.2e-74, P = 1.2e-74
 Identities = 274/945 (28%), Positives = 439/945 (46%)

Query:    16 LLFEILAIATISISFCNGSSYHVGCLGSEKEALLSFKRDLKD------PSN---RLASWS 66
             L F I+ I      F   S+ H+ C   + +A+L FK + +        SN   +  SW+
Sbjct:     8 LSFLIILIFNFLDEFA-ASTRHL-CDPDQSDAILEFKNEFETLEESCFDSNIPLKTESWT 65

Query:    67 GNGDCCAWAGVFCDNITGHVLHLDLRNPFNYHKESEYEAIRRTALVGKINPXXXXXXXXX 126
              N DCC W G+ CD   G V+ LDL   F+  +      +   + + ++ P         
Sbjct:    66 NNSDCCYWDGIKCDAKFGDVIELDLS--FSCLRGQ----LNSNSSLFRL-PQLRFLTTLD 118

Query:   127 XXXXXFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSN---- 182
                   NDF G QIP    ++ NL  L+LSR    G IP  +GNLS+L F+D S N    
Sbjct:   119 LSN---NDFIG-QIPSSLETLSNLTTLDLSRNHFSGRIPSSIGNLSHLIFVDFSHNNFSG 174

Query:   183 -------YLLYVDNFWW----LSGL--SFLEHLD-LRSVNLSKAFDWLMVTNKLPSLVEL 228
                    YL ++ +F       SG   S + +L  L ++ LS+   +  + + L SL  L
Sbjct:   175 QIPSSLGYLSHLTSFNLSYNNFSGRVPSSIGNLSYLTTLRLSRNSFFGELPSSLGSLFHL 234

Query:   229 RLANCQLHHF-SLLATA--NFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHL 285
                    +HF   + ++  N S LT +DL  N F          G IP  L NL+ L   
Sbjct:   235 TDLILDTNHFVGKIPSSLGNLSHLTSIDLHKNNF---------VGEIPFSLGNLSCLTSF 285

Query:   286 GLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGR 345
              L  N+    IP+       L+ L++ +N L G+    AL NL  +S L L  N  + G 
Sbjct:   286 ILSDNNIVGEIPSSFGNLNQLDILNVKSNKLSGSFPI-ALLNLRKLSTLSL-FNNRLTGT 343

Query:   346 IPRSMASLCNLKSLNLRGVHLSQEI-SEILDIFSGCVSNGLESLDLRSDSIYGHLT-DQL 403
             +P +M+SL NLK  +    H +  + S + +I S      L+++ L ++ + G L    +
Sbjct:   344 LPSNMSSLSNLKLFDATENHFTGPLPSSLFNIPS------LKTITLENNQLNGSLGFGNI 397

Query:   404 GQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRV 463
               + N+  L   NN+  G I  S+ +L  L+ L +++    G +    F++L  + +  +
Sbjct:   398 SSYSNLTVLRLGNNNFRGPIHRSISKLVNLKELDLSNYNTQGLVDFTIFSHLKSIEYLNL 457

Query:   464 DGNKLTLGVK-HDWIPPFQLV-ALGLRNCYVGS--RFPLWLYSQKHLQFLYLVNSSISDI 519
                  T  +  ++ +  F+L+  L L   +V +  +  L   S   +  LYL    I++ 
Sbjct:   458 SHLNTTTTIDMYEILSSFKLLDTLDLSGSHVSTTNKSSLSNSSLVLISQLYLSGCGITE- 516

Query:   520 FPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNM------SGPLPLISS 573
             FP +FL+S   +  LD+  N+I G +P       +L     SNN       S  L L S 
Sbjct:   517 FP-KFLRSQELMLTLDISNNKIKGQVPGWLWMLPVLNYVNLSNNTFIGFERSTKLGLTSI 575

Query:   574 N----LVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQN--L 627
                  +  L  SNN F+G+I  F+C    E   L+ L  ++N  NG +P C  + Q+  L
Sbjct:   576 QEPPAMRQLFCSNNNFTGNIPSFIC----ELPYLSTLDFSNNKFNGSIPTCMGNIQSPYL 631

Query:   628 KTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVG 687
             + L L +N+ +G LP ++    SL+ L +G N+L G +  SL + ++L  L+V  N+   
Sbjct:   632 QALNLRHNRLSGLLPENI--FESLISLDVGHNQLVGKLPRSLSHISSLGLLNVESNKISD 689

Query:   688 NIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIP-NCINNLT 746
               P W+      + VL+LRSN F+GP+       + L+I+DI+ N  +G +P N   N T
Sbjct:   690 TFPLWLSS-LQELQVLVLRSNAFYGPIEK--TQFSKLRIIDISGNQFNGTLPANFFVNWT 746

Query:   747 GMVTAC-SFTRSVQQYLP-LPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNF 804
              M +   +  +S  + +  + +       +   +++KG  ++ E +L +  +ID S N F
Sbjct:   747 AMFSLDENEDQSNGETMSNMYMSTDYFYFDSMVLMNKGVEMELERVLKVFTVIDFSGNKF 806

Query:   805 SGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMXXXX 864
              G+IP  +  LK L  LN S N+ +G I  S+G + +LES+D S N+LSGEIP+ +    
Sbjct:   807 EGEIPKSIGLLKELHVLNLSNNALSGHIASSMGNLMALESLDVSQNKLSGEIPQELGKLT 866

Query:   865 XXXXXXXXXXXXTGKIPSSTQLQSFDVSSFAGND-LCGAPLPKNC 908
                          G +P  TQ Q+   SSF  N  L G  L K C
Sbjct:   867 YLAYMNFSHNQLVGLLPGGTQFQTQKCSSFEDNHGLYGPSLEKIC 911

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2825762 RLP6 "AT1G45616" [Arabidopsis thaliana (taxid:3702)]

 Score = 733 (263.1 bits), Expect = 1.6e-72, P = 1.6e-72
 Identities = 281/1003 (28%), Positives = 436/1003 (43%)

Query:    20 ILAIATISISFCNGSSYHVGCLGSEKEALLSFKRDLK---------------DPSN--RL 62
             +L  +T S      S     C   +++ALL FK + K               D ++  + 
Sbjct:    16 VLLFSTSSFCNTFASLTQDSCHPDQRDALLEFKNEFKIWYPNGFLDIDGVLMDVTSYPKT 75

Query:    63 ASWSGNGDCCAWAGVFCDNITGHVLHLDLRNPFNYHKESEYEAIRRTALVGKINPXXXXX 122
              SW+ N DCC W G+ CD  +G V  LDL     + +     ++ R   +  +N      
Sbjct:    76 KSWTKNSDCCYWDGITCDTKSGKVTGLDLSCSCLHGRLEPNSSLFRLQHLQSVN------ 129

Query:   123 XXXXXXXXXFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSN 182
                      +N+F    IP  F     L  LNLSR+   G I   L  L+NL  LDLSS+
Sbjct:   130 -------LAYNNFTNSPIPAEFSKFMRLERLNLSRSSFSGHISIKLLQLTNLVSLDLSSS 182

Query:   183 Y-----LLYVDN--FWWLSGLSF--LEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANC 233
             +      L ++   F  L  L+F  L  LD+ SV++S A    +  + + SL  L L  C
Sbjct:   183 FPYSPSSLSIEKPLFLHLLALNFMNLRELDMSSVDISSAIP--IEFSYMWSLRSLTLKGC 240

Query:   234 QL-HHF--SLLATANFSSLTV---LDLS--------DNQFDKWFIPSWVF-GPIPRGLQN 278
              L   F  S+L   N  S+++   L+L         +N   K  I +  F G IP  + N
Sbjct:   241 NLLGRFPNSVLLIPNLESISLDHNLNLEGSLPNFLRNNSLLKLSIYNTSFSGTIPNSISN 300

Query:   279 LTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSL 338
             L  L  L L  + F+  IP+ L    HL  L LS N+  G I S ++ NL  ++  D+S 
Sbjct:   301 LKHLTSLKLQQSAFSGRIPSSLRSLSHLSNLVLSENNFVGEIPS-SVSNLKQLTLFDVSD 359

Query:   339 NMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGH 398
             N  + G  P S+ +L  L+ +++   H +  +   +   S      LE      +S  G 
Sbjct:   360 N-NLNGNFPSSLLNLNQLRYIDICSNHFTGFLPPTISQLSN-----LEFFSACDNSFTGS 413

Query:   399 LTDQLGQFKNIVTLDFANNSIVGLIP-ESLGQLSTLRVLRINDNKLNGTLSAIH-FANLT 456
             +   L    ++ TL  + N +      +++  L  L+ L +++N    +   +  F +L 
Sbjct:   414 IPSSLFNISSLTTLGLSYNQLNDTTNIKNISLLHNLQRLLLDNNNFKASQVDLDVFLSLK 473

Query:   457 KLSWFRVDGNKL-TLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSS 515
             +L    + G  L T  +  D      L  L L  C +   FP ++ +Q++L  + L N++
Sbjct:   474 RLVSLALSGIPLSTTNITSDSEFSSHLEYLELSGCNI-IEFPEFIRNQRNLSSIDLSNNN 532

Query:   516 ISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTG--LLILSVYSNNMSGPLPLISS 573
             I    P  +L    +L  +DL  N + G   +L   +G  +++L + SN   GPL +   
Sbjct:   533 IKGQVP-NWLWRLPELSTVDLSNNSLIGFNGSLKALSGSKIVMLDLSSNAFQGPLFMPPR 591

Query:   574 NLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQN-LKTLKL 632
              + +   S N F+G I P +C   N       L L++N L+G +P C  +  + L  L L
Sbjct:   592 GIQYFLGSYNNFTGYIPPSICGLANPL----ILDLSNNNLHGLIPRCLEAQMSSLSVLNL 647

Query:   633 SNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTW 692
              NN   G+LP    +   L  L +  N L G +  SL  C+ALE L+V  N      P W
Sbjct:   648 RNNSLDGSLPNIFMNAKVLSSLDVSHNTLEGKLPASLAGCSALEILNVESNNINDTFPFW 707

Query:   693 IGERFSRMVVLILRSNKFHGPLPT--GLC-DLAFLQILDIADNNLSGAIPNCINNLTGMV 749
             +     ++ VL+LRSN F G L    G+      L+I D++ N+  G +P+  +      
Sbjct:   708 LNS-LPKLQVLVLRSNNFRGTLHNVDGVWFGFPLLRITDVSHNDFVGTLPS--DYFMNW- 763

Query:   750 TACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIP 809
             TA S + +  QY+  P D G        +++KG  ++ + IL    +ID + N   GKIP
Sbjct:   764 TAISKSETELQYIGDPEDYGYYT--SLVLMNKGVSMEMQRILTKYTVIDFAGNKIQGKIP 821

Query:   810 LEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMXXXXXXXXX 869
               V  LK L  LN S N+FTG IP S+  + +LES+D S N++ GEIP  +         
Sbjct:   822 ESVGILKELHVLNLSSNAFTGHIPSSLANLTNLESLDISQNKIGGEIPPELGTLSSLEWI 881

Query:   870 XXXXXXXTGKIPSSTQLQSFDVSSFAGN---------DLCG---APLPKNCTENVSISXX 917
                     G IP  TQ    + SS+ GN         D+CG   AP P        +   
Sbjct:   882 NVSHNQLVGSIPQGTQFHRQNCSSYEGNPGIYGSSLKDVCGDIHAPRPPQAV----LPHS 937

Query:   918 XXXXXXXXXXXHWLYVSAALGFVVG--FWCFMGPLLV--RRRW 956
                         W  ++A LGF  G  F   MG ++   +  W
Sbjct:   938 SSSSSEEDELISW--IAACLGFAPGMVFGLTMGYIMTSHKHEW 978

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0016020 "membrane" evidence=IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 690 (248.0 bits), Expect = 5.3e-67, P = 5.3e-67
 Identities = 257/850 (30%), Positives = 403/850 (47%)

Query:    39 GCLGSEKEALLSFKRDL-KDPS--NRLASW-SGNGDCCAWAGVFCDNITG--HVLHLDLR 92
             G + ++ + LL  K+ L  +P   + L  W S N + C+W GV CDN TG   V+ L+L 
Sbjct:    21 GIINNDLQTLLEVKKSLVTNPQEDDPLRQWNSDNINYCSWTGVTCDN-TGLFRVIALNLT 79

Query:    93 NPFNYHKESEYEAIRRTALVGKINPXXXXXXXXXXXXXXFNDFQGIQIPRFFGSMGNLRY 152
                               L G I+P               N+  G  IP    ++ +L  
Sbjct:    80 G---------------LGLTGSISPWFGRFDNLIHLDLSSNNLVG-PIPTALSNLTSLES 123

Query:   153 LNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLS-- 210
             L L   ++ G IP  LG+L N++ L +  N L+  D    L  L  L+ L L S  L+  
Sbjct:   124 LFLFSNQLTGEIPSQLGSLVNIRSLRIGDNELVG-DIPETLGNLVNLQMLALASCRLTGP 182

Query:   211 ---------KAFDWLMVTNKLPSLVELRLANCQ-LHHFSLLATANFSSLTV---LDLSDN 257
                      +    ++  N L   +   L NC  L  F+  A  N  + T+   L   +N
Sbjct:   183 IPSQLGRLVRVQSLILQDNYLEGPIPAELGNCSDLTVFT--AAENMLNGTIPAELGRLEN 240

Query:   258 QFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQ 317
                     + + G IP  L  ++ L++L L +N     IP  L    +L+ L LS N+L 
Sbjct:   241 LEILNLANNSLTGEIPSQLGEMSQLQYLSLMANQLQGLIPKSLADLGNLQTLDLSANNLT 300

Query:   318 GTIDSEALGNLTSISWLDLSL-NMGIEGRIPRSMASL-CNLKSLNLRGVHLSQEISEILD 375
             G I  E   N++ +  LDL L N  + G +P+S+ S   NL+ L L G  LS EI   L 
Sbjct:   301 GEIPEE-FWNMSQL--LDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVEL- 356

Query:   376 IFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRV 435
               S C S  L+ LDL ++S+ G + + L +   +  L   NN++ G +  S+  L+ L+ 
Sbjct:   357 --SKCQS--LKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSISNLTNLQW 412

Query:   436 LRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSR 495
             L +  N L G L     + L KL    +  N+ +  +  +      L  + +   +    
Sbjct:   413 LVLYHNNLEGKLPK-EISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGE 471

Query:   496 FPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFT-GL 554
              P  +   K L  L+L  + +    P   L +  QL  LDL  NQ+ G IP+   F  GL
Sbjct:   472 IPPSIGRLKELNLLHLRQNELVGGLPAS-LGNCHQLNILDLADNQLSGSIPSSFGFLKGL 530

Query:   555 LILSVYSNNMSGPLP--LIS-SNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDN 611
               L +Y+N++ G LP  LIS  NL  ++LS+N  +G+I P LC     + S  +  + +N
Sbjct:   531 EQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTIHP-LC----GSSSYLSFDVTNN 585

Query:   612 YLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKN 671
                 E+P    + QNL  L+L  N+ TG +P+++G +  L  L +  N L+G I + L  
Sbjct:   586 GFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVL 645

Query:   672 CTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIAD 731
             C  L  +D+  N   G IP W+G + S++  L L SN+F   LPT L +   L +L +  
Sbjct:   646 CKKLTHIDLNNNFLSGPIPPWLG-KLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDG 704

Query:   732 NNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVI--LVE-KASVVS-KGEM-VD 786
             N+L+G+IP  I NL G +   +  ++ Q    LP  +G +  L E + S  S  GE+ V+
Sbjct:   705 NSLNGSIPQEIGNL-GALNVLNLDKN-QFSGSLPQAMGKLSKLYELRLSRNSLTGEIPVE 762

Query:   787 YEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESID 846
                + +L   +D+S NNF+G IP  +  L  L++L+ S+N  TG +P S+G M+SL  ++
Sbjct:   763 IGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLN 822

Query:   847 FSANQLSGEI 856
              S N L G++
Sbjct:   823 VSFNNLGGKL 832

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2129246 RLP50 "receptor like protein 50" [Arabidopsis thaliana (taxid:3702)]

 Score = 676 (243.0 bits), Expect = 1.7e-66, P = 1.7e-66
 Identities = 257/840 (30%), Positives = 389/840 (46%)

Query:   153 LNLSRTRIGGMIPHH--LGNLSNLQFLDLSSNYLLYV--DNFWWLSG-LSFLEHLDLRSV 207
             L+L  + + G +  +  L  L +LQ LDLS N L     D+    SG   +L  L+L   
Sbjct:    84 LDLGNSDLNGRLRSNSSLFRLQHLQSLDLSYNDLSCTLPDS----SGNFKYLRVLNLLGC 139

Query:   208 NLSKAFDWLMVTNKLPSLVELRLA-NCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPS 266
             NL       +    L  L +L L+ N  L    L +  N   L VL L+  +F       
Sbjct:   140 NLFGEIPTSL--RSLSYLTDLDLSYNDDLTGEILDSMGNLKHLRVLSLTSCKFT------ 191

Query:   267 WVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALG 326
                G IP  L NLT L  L L  N+F   +P+ +     L  L+L   +  G I + +LG
Sbjct:   192 ---GKIPSSLGNLTYLTDLDLSWNYFTGELPDSMGNLKSLRVLNLHRCNFFGKIPT-SLG 247

Query:   327 NLTSISWLDLSLN-MGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDI--FSGCV-S 382
             +L++++ LD+S N    EG  P SM+SL  L    L  ++LS   +  L    F   + S
Sbjct:   248 SLSNLTDLDISKNEFTSEG--PDSMSSLNRLTDFQLMLLNLSSLTNVDLSSNQFKAMLPS 305

Query:   383 N-----GLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLST---LR 434
             N      LE+ D+  +S  G +   L    +++ LD   N   G  P  +G +S+   L+
Sbjct:   306 NMSSLSKLEAFDISGNSFSGTIPSSLFMLPSLIKLDLGTNDFSG--PLKIGNISSPSNLQ 363

Query:   435 VLRINDNKLNGTL--SAIHFANLTKLSW-FRVDGNKLTLGVKHDWIPPFQLVALGLRNCY 491
              L I +N +NG +  S +    L+ LS  F   G  +   +    +   + + L   N  
Sbjct:   364 ELYIGENNINGPIPRSILKLVGLSALSLSFWDTGGIVDFSIFLQ-LKSLRSLDLSGINLN 422

Query:   492 VGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPN-LTE 550
             + S   L      H+  L L + +IS  FP +FL++ + L  LD+  NQI G +P  L  
Sbjct:   423 ISSSHHL----PSHMMHLILSSCNISQ-FP-KFLENQTSLYHLDISANQIEGQVPEWLWR 476

Query:   551 FTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLND 610
                L  +++  N  SG L ++ + +     S+N FSG I   +C        +  L L++
Sbjct:   477 LPTLRYVNIAQNAFSGELTMLPNPIYSFIASDNKFSGEIPRAVC-------EIGTLVLSN 529

Query:   611 NYLNGELPDCW-MSYQNLKTLKLSNNKFTGNLPYSM--GSLTSLVWLHLGENRLSGNILV 667
             N  +G +P C+ +S + L  L L NN  +G +P     G L SL    +G NRLSG    
Sbjct:   530 NNFSGSIPPCFEISNKTLSILHLRNNSLSGVIPEESLHGYLRSL---DVGSNRLSGQFPK 586

Query:   668 SLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAF--LQ 725
             SL NC+ L+ L+V EN      P+W+ +    + +L+LRSN+FHGP+ +    L+F  L+
Sbjct:   587 SLINCSYLQFLNVEENRINDTFPSWL-KSLPNLQLLVLRSNEFHGPIFSPGDSLSFSKLR 645

Query:   726 ILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVG--VILVEKASVVS-KG 782
               DI++N  SG +P+  +   G     SF   +       + VG       K+ V++ KG
Sbjct:   646 FFDISENRFSGVLPS--DYFVGWSVMSSFVDIIDNTPGFTV-VGDDQESFHKSVVLTIKG 702

Query:   783 EMVDYEDI-LNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRS 841
               ++       + + ID+S N   G IP  +  LK L  LN S N+FTG IP S+  + +
Sbjct:   703 LNMELVGSGFEIYKTIDVSGNRLEGDIPESIGILKELIVLNMSNNAFTGHIPPSLSNLSN 762

Query:   842 LESIDFSANQLSGEIPESMXXXXXXXXXXXXXXXXTGKIPSSTQLQSFDVSSFAGND-LC 900
             L+S+D S N+LSG IP  +                 G IP  TQ+QS + SSFA N  LC
Sbjct:   763 LQSLDLSQNRLSGSIPGELGELTFLARMNFSYNMLEGPIPQGTQIQSQNSSSFAENPGLC 822

Query:   901 GAPLPKNCTENVSISXXXXXXXXXXXXXHWLYVSAALGFVVGFWCFM--GPLLV--RRRW 956
             GAPL K C                     W  V+AA+G+V G +C +  G +L   +R W
Sbjct:   823 GAPLQKKCGGE---EEEDKEKEEKDKGLSW--VAAAIGYVPGLFCGLAIGHILTSYKRDW 877

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 674 (242.3 bits), Expect = 1.0e-65, Sum P(2) = 1.0e-65
 Identities = 249/846 (29%), Positives = 381/846 (45%)

Query:   149 NLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLL-YVDNFWWLSGLSFLEHLDLRSV 207
             NLR L+L++  + G IP  +GNLS+L  L LS N  L  + +   +  LS L  L L S 
Sbjct:   126 NLRVLDLTQNDLDGEIPSSIGNLSHLTSLHLSYNQFLGLIPSS--IENLSRLTSLHLSSN 183

Query:   208 NLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSW 267
               S       + N L  L  L L++ Q       +  N S+LT L L  N F        
Sbjct:   184 QFSGQIP-SSIGN-LSHLTSLELSSNQFSGQIPSSIGNLSNLTFLSLPSNDF-------- 233

Query:   268 VFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGN 327
              FG IP  + NL  L +L L  N+F   IP+       L  L + +N L G +    L N
Sbjct:   234 -FGQIPSSIGNLARLTYLYLSYNNFVGEIPSSFGNLNQLIVLQVDSNKLSGNVPISLL-N 291

Query:   328 LTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEI-SEILDIFSGCVSNGLE 386
             LT +S L LS N    G IP +++ L NL          +  + S + +I        L 
Sbjct:   292 LTRLSALLLSHNQ-FTGTIPNNISLLSNLMDFEASNNAFTGTLPSSLFNI------PPLI 344

Query:   387 SLDLRSDSIYGHLT-DQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNG 445
              LDL  + + G L    +    N+  L   +N+ +G IP SL +   L +  ++   LN 
Sbjct:   345 RLDLSDNQLNGTLHFGNISSPSNLQYLIIGSNNFIGTIPRSLSRFVNLTLFDLSH--LNT 402

Query:   446 TLSAIHFA---NLTKLSWFRVDGNKLTLGVKHDWIPPFQ-LVALGLRNCYVGSRFPLWLY 501
                 + F+   +L  L   R+     T    +D +P F+ L +L +    V +     + 
Sbjct:   403 QCRPVDFSIFSHLKSLDDLRLSYLTTTTIDLNDILPYFKTLRSLDISGNLVSATNKSSVS 462

Query:   502 SQ---KHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPN-LTEFTGLLIL 557
             S    + +Q LYL    I+D FP   L++  +L FLD+  N+I G +P  L     L  L
Sbjct:   463 SDPPSQSIQSLYLSGCGITD-FP-EILRTQHELGFLDVSNNKIKGQVPGWLWTLPNLFYL 520

Query:   558 SVYSNNM-----SGPLPLISS----NLVFLDLSNNLFSGSISPFLCYRINETKSLNALQL 608
             ++ +N       S     +SS    +++ L  SNN F+G I  F+C      +SLN L L
Sbjct:   521 NLSNNTFISFESSSKKHGLSSVRKPSMIHLFASNNNFTGKIPSFIC----GLRSLNTLDL 576

Query:   609 NDNYLNGELPDCWMSYQN-LKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILV 667
             ++N  NG +P C    ++ L  L L  N  +G LP  +    SL  L +G N L G +  
Sbjct:   577 SENNYNGSIPRCMEKLKSTLFVLNLRQNNLSGGLPKHI--FESLRSLDVGHNLLVGKLPR 634

Query:   668 SLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQIL 727
             SL   + LE L+V  N      P W+    S++ VL+LRSN FHGP+         L+I+
Sbjct:   635 SLIRFSNLEVLNVESNRINDTFPFWLSS-LSKLQVLVLRSNAFHGPIHEAT--FPELRII 691

Query:   728 DIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDY 787
             DI+ N+ +G +P             S  ++  Q     +  G+   +   +++KG  ++ 
Sbjct:   692 DISHNHFNGTLPT--EYFVKWSAMSSLGKNEDQSNEKYMGSGLYYQDSMVLMNKGLAMEL 749

Query:   788 EDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDF 847
               IL +   +D S N F G+IP  +  LK L  LN S N+F G IP S+G + +LES+D 
Sbjct:   750 VRILTIYTALDFSGNKFEGEIPKSIGLLKELLVLNLSNNAFGGHIPSSMGNLTALESLDV 809

Query:   848 SANQLSGEIPESMXXXXXXXXXXXXXXXXTGKIPSSTQLQSFDVSSFAGN-DLCGAPLPK 906
             S N+L+GEIP+ +                 G +P  TQ +  + S+F  N  L G  L +
Sbjct:   810 SQNKLTGEIPQELGDLSFLAYMNFSHNQLAGLVPGGTQFRRQNCSAFENNLGLFGPSLDE 869

Query:   907 NCTE-NVSISXXXXXXXXXXXXXHWL-YVSAALGFVVG--FWCFMGPLLV--RRRWRYKY 960
              C + +   S               + +++AA+GF+ G  F   +G +LV  +  W    
Sbjct:   870 VCRDKHTPASQQNETTETEEEDEEEISWIAAAIGFIPGIVFGLTIGYILVSYKPEWFMNP 929

Query:   961 YHSLNR 966
             +   NR
Sbjct:   930 FGRNNR 935

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2119430 RLP47 "receptor like protein 47" [Arabidopsis thaliana (taxid:3702)]

 Score = 667 (239.9 bits), Expect = 1.5e-65, P = 1.5e-65
 Identities = 216/716 (30%), Positives = 347/716 (48%)

Query:   270 GPIPRGLQNLTSLRHLG---LDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALG 326
             GP+ R   +L  L+HL    L SNH +  +P+ +     L+ L L N +L G I S +LG
Sbjct:    38 GPL-RSNSSLFRLQHLQKLVLGSNHLSGILPDSIGNLKRLKVLVLVNCNLFGKIPS-SLG 95

Query:   327 NLTSISWLDLSLN-MGIEGRIPRSMASLCNLKSLNLR-----GVHLSQ-EISEILDIFSG 379
             NL+ ++ LDLS N    EG  P SM +L  L  + L+      + L   ++  +L     
Sbjct:    96 NLSYLTHLDLSYNDFTSEG--PDSMGNLNRLTDMLLKLSSVTWIDLGDNQLKGMLPSNMS 153

Query:   380 CVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLST---LRVL 436
              +S  LE+ D+  +S  G +   L    +++ L    N   G  P  +G +S+   L++L
Sbjct:   154 SLSK-LEAFDISGNSFSGTIPSSLFMIPSLILLHLGRNDFSG--PFEIGNISSPSNLQLL 210

Query:   437 RINDNKLNGTLSAIH-FANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSR 495
              I  N  N  +  +  F+ L  L +  V G  + L +      P  +  LGL +C + S 
Sbjct:   211 NIGRNNFNPDIVDLSIFSPLLSLGYLDVSG--INLKISSTVSLPSPIEYLGLLSCNI-SE 267

Query:   496 FPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHG---PIPNLTEFT 552
             FP +L +Q  L++L +  + I    P  +L S  +L+++++  N  +G   P   +    
Sbjct:   268 FPKFLRNQTSLEYLDISANQIEGQVP-EWLWSLPELRYVNISHNSFNGFEGPADVIQGGR 326

Query:   553 GLLILSVYSNNMSGP---LPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLN 609
              LL+L + SN    P   LP++S N +F   SNN FSG I   +C    E  +L  L L+
Sbjct:   327 ELLVLDISSNIFQDPFPLLPVVSMNYLFS--SNNRFSGEIPKTIC----ELDNLRILVLS 380

Query:   610 DNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSL 669
             +N  +G +P C+ +  +L  L L NN  +G  P    S   L    +G N  SG +  SL
Sbjct:   381 NNNFSGSIPRCFENL-HLYVLHLRNNNLSGIFPEEAIS-HHLQSFDVGHNLFSGELPKSL 438

Query:   670 KNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAF--LQIL 727
              NC+ +E L+V +N      P+W+ E    + +L+LRSN+F+GP+ +    L+F  L+I 
Sbjct:   439 INCSDIEFLNVEDNRINDTFPSWL-ELLPNLQILVLRSNEFYGPIFSPGDSLSFSRLRIF 497

Query:   728 DIADNNLSGAIPN-CINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVD 786
             DI++N  +G +P+      + M +       + QY    ID      +  ++++KG  ++
Sbjct:   498 DISENRFTGVLPSDYFVGWSVMSSVVDIDGRIIQYTVTGIDRD-FYHKSVALINKGLKME 556

Query:   787 YEDI-LNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESI 845
                    + + ID+S N   G IP  +  LK +  L+ S N+FTG IP S+  + +L+S+
Sbjct:   557 LVGSGFTIYKTIDVSGNRLEGDIPESIGLLKEVIVLSMSNNAFTGHIPPSLSNLSNLQSL 616

Query:   846 DFSANQLSGEIPESMXXXXXXXXXXXXXXXXTGKIPSSTQLQSFDVSSFAGND-LCGAPL 904
             D S N+LSG IP  +                 G IP +TQ+Q+ D SSF  N  LCGAPL
Sbjct:   617 DLSQNRLSGSIPGELGKLTFLEWMNFSHNRLEGPIPETTQIQTQDSSSFTENPGLCGAPL 676

Query:   905 PKNCTENVSISXXXXXXXXXXXXXHWLYVSAALGFVVGFWCFM--GPLLV--RRRW 956
              K C      +              + +++AA+G+V G  C +  G +LV  +R W
Sbjct:   677 LKKCGGEEEATKQEQDEDKEEEDQVFSWIAAAIGYVPGVVCGLTIGHILVSHKRDW 732

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 682 (245.1 bits), Expect = 4.3e-65, P = 4.3e-65
 Identities = 255/849 (30%), Positives = 387/849 (45%)

Query:    46 EALLSFKRD-LKDPSNR--LASW-SGNGDCCAWAGVFCDNITGHVLHLDLRNPFNYHKES 101
             + LL  K   + +P     L  W SG+   C W GV C      ++ L+L          
Sbjct:    31 QTLLELKNSFITNPKEEDVLRDWNSGSPSYCNWTGVTCGG--REIIGLNLSG-------- 80

Query:   102 EYEAIRRTALVGKINPXXXXXXXXXXXXXXFNDFQGIQIPRFFGSMGN-LRYLNLSRTRI 160
                      L G I+P               N   G  IP    ++ + L  L+L    +
Sbjct:    81 -------LGLTGSISPSIGRFNNLIHIDLSSNRLVG-PIPTTLSNLSSSLESLHLFSNLL 132

Query:   161 GGMIPHHLGNLSNLQFLDLSSNYL--LYVDNFWWLSGLSFLEHLDLRSVNLSKA-FDWL- 216
              G IP  LG+L NL+ L L  N L     + F  L  L  L     R   L  + F  L 
Sbjct:   133 SGDIPSQLGSLVNLKSLKLGDNELNGTIPETFGNLVNLQMLALASCRLTGLIPSRFGRLV 192

Query:   217 ------MVTNKLPSLVELRLANC-QLHHF---------SLLATAN-FSSLTVLDLSDNQF 259
                   +  N+L   +   + NC  L  F         SL A  N   +L  L+L DN F
Sbjct:   193 QLQTLILQDNELEGPIPAEIGNCTSLALFAAAFNRLNGSLPAELNRLKNLQTLNLGDNSF 252

Query:   260 DKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGT 319
                       G IP  L +L S+++L L  N     IP  L    +L+ L LS+N+L G 
Sbjct:   253 S---------GEIPSQLGDLVSIQYLNLIGNQLQGLIPKRLTELANLQTLDLSSNNLTGV 303

Query:   320 IDSEALGNLTSISWLDLSLNMGIEGRIPRSMASL-CNLKSLNLRGVHLSQEI-SEILDIF 377
             I  E    +  + +L L+ N  + G +P+++ S   +LK L L    LS EI +EI    
Sbjct:   304 IHEE-FWRMNQLEFLVLAKNR-LSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEI---- 357

Query:   378 SGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLR 437
             S C S  L+ LDL ++++ G + D L Q   +  L   NNS+ G +  S+  L+ L+   
Sbjct:   358 SNCQS--LKLLDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSSSISNLTNLQEFT 415

Query:   438 INDNKLNGTL-SAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRF 496
             +  N L G +   I F  L KL    +  N+ +  +  +     +L  +      +    
Sbjct:   416 LYHNNLEGKVPKEIGF--LGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEI 473

Query:   497 PLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEF-TGLL 555
             P  +   K L  L+L  + +    P   L +  Q+  +DL  NQ+ G IP+   F T L 
Sbjct:   474 PSSIGRLKDLTRLHLRENELVGNIPAS-LGNCHQMTVIDLADNQLSGSIPSSFGFLTALE 532

Query:   556 ILSVYSNNMSGPLP--LIS-SNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNY 612
             +  +Y+N++ G LP  LI+  NL  ++ S+N F+GSISP LC     + S  +  + +N 
Sbjct:   533 LFMIYNNSLQGNLPDSLINLKNLTRINFSSNKFNGSISP-LC----GSSSYLSFDVTENG 587

Query:   613 LNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNC 672
               G++P       NL  L+L  N+FTG +P + G ++ L  L +  N LSG I V L  C
Sbjct:   588 FEGDIPLELGKSTNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLC 647

Query:   673 TALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADN 732
               L  +D+  N   G IPTW+G +   +  L L SNKF G LPT +  L  +  L +  N
Sbjct:   648 KKLTHIDLNNNYLSGVIPTWLG-KLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGN 706

Query:   733 NLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVI--LVEK--ASVVSKGEM-VDY 787
             +L+G+IP  I NL  +  A +   + Q   PLP  +G +  L E   +     GE+ V+ 
Sbjct:   707 SLNGSIPQEIGNLQAL-NALNLEEN-QLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEI 764

Query:   788 EDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDF 847
               + +L   +D+S NNF+G+IP  ++ L  L+SL+ S+N   G +P  IG M+SL  ++ 
Sbjct:   765 GQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNL 824

Query:   848 SANQLSGEI 856
             S N L G++
Sbjct:   825 SYNNLEGKL 833

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009553 "embryo sac development" evidence=IMP

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00031679 hypothetical protein (1024 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	979
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-63
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-55
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-18
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-08
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	5e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-08
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-07
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	9e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	7e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.002
COG5238	388	COG5238, RNA1, Ran GTPase-activating protein (RanG	0.002
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.003
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  232 bits (592), Expect = 3e-63
 Identities = 219/739 (29%), Positives = 322/739 (43%), Gaps = 160/739 (21%)

Query: 5   PNTSAVLVFDLLLFEILAIATISISFCNGSSYHVGCLGSEKEALLSFKRDLKDPSNRLAS 64
           P     L+F L              F N S  H      E E LLSFK  + DP   L++
Sbjct: 6   PQHCPYLIFMLFFL-----------FLNFSMLH----AEELELLLSFKSSINDPLKYLSN 50

Query: 65  WSGNGDCCAWAGVFCDNITGHVLHLDLRNPFNYHKESEYEAIRRTALVGKINPSLLDLKH 124
           W+ + D C W G+ C+N +  V+ +DL                   + GKI+ ++  L +
Sbjct: 51  WNSSADVCLWQGITCNNSS-RVVSIDLSG---------------KNISGKISSAIFRLPY 94

Query: 125 LSYLDLSFNDFQGIQIPR-FFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNY 183
           +  ++LS N   G  IP   F +  +LRYLNLS     G IP   G++ NL+ LDLS+N 
Sbjct: 95  IQTINLSNNQLSG-PIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNN- 150

Query: 184 LLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLAT 243
                                            M++ ++P+ +                 
Sbjct: 151 ---------------------------------MLSGEIPNDI----------------- 160

Query: 244 ANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRF 303
            +FSSL VLDL  N          + G IP  L NLTSL  L L SN     IP  L + 
Sbjct: 161 GSFSSLKVLDLGGN---------VLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQM 211

Query: 304 IHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRG 363
             L+++ L  N+L G I  E +G LTS++ LDL  N  + G IP S+ +L NL+ L L  
Sbjct: 212 KSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYN-NLTGPIPSSLGNLKNLQYLFLYQ 269

Query: 364 VHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLI 423
             LS  I                       SI+          + +++LD ++NS+ G I
Sbjct: 270 NKLSGPIPP---------------------SIFS--------LQKLISLDLSDNSLSGEI 300

Query: 424 PESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLV 483
           PE + QL  L +L +  N   G +  +   +L +L   ++  NK +  +  +      L 
Sbjct: 301 PELVIQLQNLEILHLFSNNFTGKI-PVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLT 359

Query: 484 ALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHG 543
            L L    +    P  L S  +L  L L ++S+    P + L +   L+ + L  N   G
Sbjct: 360 VLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIP-KSLGACRSLRRVRLQDNSFSG 418

Query: 544 PIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSL 603
            +P  +EFT               LPL+     FLD+SNN   G I+     R  +  SL
Sbjct: 419 ELP--SEFT--------------KLPLVY----FLDISNNNLQGRINS----RKWDMPSL 454

Query: 604 NALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSG 663
             L L  N   G LPD + S + L+ L LS N+F+G +P  +GSL+ L+ L L EN+LSG
Sbjct: 455 QMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSG 513

Query: 664 NILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLI---LRSNKFHGPLPTGLCD 720
            I   L +C  L SLD+  N+  G IP      FS M VL    L  N+  G +P  L +
Sbjct: 514 EIPDELSSCKKLVSLDLSHNQLSGQIPA----SFSEMPVLSQLDLSQNQLSGEIPKNLGN 569

Query: 721 LAFLQILDIADNNLSGAIP 739
           +  L  ++I+ N+L G++P
Sbjct: 570 VESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  207 bits (529), Expect = 2e-55
 Identities = 189/663 (28%), Positives = 296/663 (44%), Gaps = 126/663 (19%)

Query: 245 NFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIP-NWLYRF 303
           N S +  +DLS            + G I   +  L  ++ + L +N  +  IP +     
Sbjct: 67  NSSRVVSIDLSGKN---------ISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTS 117

Query: 304 IHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRG 363
             L YL+LSNN+  G+I   ++ NL +   LDLS NM + G IP  + S  +LK L+L G
Sbjct: 118 SSLRYLNLSNNNFTGSIPRGSIPNLET---LDLSNNM-LSGEIPNDIGSFSSLKVLDLGG 173

Query: 364 VHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLI 423
             L  +I   L   +      LE L L S+ + G +  +LGQ K++  +    N++ G I
Sbjct: 174 NVLVGKIPNSLTNLTS-----LEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI 228

Query: 424 PESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLV 483
           P  +G L++L  L +  N L G + +    NL  L +  +  NKL+       IPP    
Sbjct: 229 PYEIGGLTSLNHLDLVYNNLTGPIPS-SLGNLKNLQYLFLYQNKLS-----GPIPPS--- 279

Query: 484 ALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHG 543
                           ++S + L  L L ++S+S   P   +     L+ L L  N   G
Sbjct: 280 ----------------IFSLQKLISLDLSDNSLSGEIP-ELVIQLQNLEILHLFSNNFTG 322

Query: 544 PIP-NLTEFTGLLILSVYSNNMSGPLPL---ISSNLVFLDLSNNLFSGSISPFLCYRINE 599
            IP  LT    L +L ++SN  SG +P      +NL  LDLS N  +G I   LC   N 
Sbjct: 323 KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNL 382

Query: 600 TKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGEN 659
            K    L L  N L GE+P    + ++L+ ++L +N F+G LP     L  + +L +  N
Sbjct: 383 FK----LILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNN 438

Query: 660 RLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLC 719
            L G I     +  +L+ L +  N+F G +P   G +                       
Sbjct: 439 NLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKR---------------------- 476

Query: 720 DLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVV 779
               L+ LD++ N  SGA+P  + +L+                                 
Sbjct: 477 ----LENLDLSRNQFSGAVPRKLGSLS--------------------------------- 499

Query: 780 SKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVM 839
              E++           + +S N  SG+IP E+++ K L SL+ S+N  +G+IP S   M
Sbjct: 500 ---ELMQ----------LKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEM 546

Query: 840 RSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGN-D 898
             L  +D S NQLSGEIP+++ ++  L  +N+S+N+L G +PS+    + + S+ AGN D
Sbjct: 547 PVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNID 606

Query: 899 LCG 901
           LCG
Sbjct: 607 LCG 609

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 90.6 bits (225), Expect = 1e-18
 Identities = 47/116 (40%), Positives = 70/116 (60%), Gaps = 7/116 (6%)

Query: 806 GKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTF 865
           G IP +++ L+ LQS+N S NS  G IP S+G + SLE +D S N  +G IPES+  LT 
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 866 LNHLNLSNNNLTGKIPSST-----QLQSFDVSSFAGNDLCGAPLPKNCTENVSISE 916
           L  LNL+ N+L+G++P++         SF+ +  AG  LCG P  + C  ++S+  
Sbjct: 492 LRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG--LCGIPGLRACGPHLSVGA 545

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 69.1 bits (169), Expect = 6e-12
 Identities = 33/94 (35%), Positives = 54/94 (57%)

Query: 603 LNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLS 662
           ++ L L++  L G +P+     ++L+++ LS N   GN+P S+GS+TSL  L L  N  +
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 663 GNILVSLKNCTALESLDVGENEFVGNIPTWIGER 696
           G+I  SL   T+L  L++  N   G +P  +G R
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVPAALGGR 513

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 63.3 bits (154), Expect = 4e-10
 Identities = 49/150 (32%), Positives = 66/150 (44%), Gaps = 29/150 (19%)

Query: 44  EKEALLSFKRDLKDPSNRLASWSGNGDCCA-----WAGVFC--DNITGH--VLHLDLRNP 94
           E  AL + K  L  P  R   W  NGD C      W+G  C  D+  G   +  L L N 
Sbjct: 373 EVSALQTLKSSLGLPL-RFG-W--NGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDN- 427

Query: 95  FNYHKESEYEAIRRTALVGKINPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLN 154
                           L G I   +  L+HL  ++LS N  +G  IP   GS+ +L  L+
Sbjct: 428 --------------QGLRGFIPNDISKLRHLQSINLSGNSIRG-NIPPSLGSITSLEVLD 472

Query: 155 LSRTRIGGMIPHHLGNLSNLQFLDLSSNYL 184
           LS     G IP  LG L++L+ L+L+ N L
Sbjct: 473 LSYNSFNGSIPESLGQLTSLRILNLNGNSL 502

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 63.3 bits (154), Expect = 4e-10
 Identities = 36/86 (41%), Positives = 52/86 (60%), Gaps = 2/86 (2%)

Query: 285 LGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEG 344
           LGLD+      IPN + +  HL+ ++LS NS++G I   +LG++TS+  LDLS N    G
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNI-PPSLGSITSLEVLDLSYNS-FNG 480

Query: 345 RIPRSMASLCNLKSLNLRGVHLSQEI 370
            IP S+  L +L+ LNL G  LS  +
Sbjct: 481 SIPESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.1 bits (151), Expect = 1e-09
 Identities = 40/119 (33%), Positives = 58/119 (48%), Gaps = 30/119 (25%)

Query: 331 ISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDL 390
           I  L L  N G+ G IP  ++ L +L+S+NL G                           
Sbjct: 420 IDGLGLD-NQGLRGFIPNDISKLRHLQSINLSG--------------------------- 451

Query: 391 RSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSA 449
             +SI G++   LG   ++  LD + NS  G IPESLGQL++LR+L +N N L+G + A
Sbjct: 452 --NSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.1 bits (138), Expect = 4e-08
 Identities = 33/82 (40%), Positives = 43/82 (52%), Gaps = 1/82 (1%)

Query: 821 LNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKI 880
           L        G IP  I  +R L+SI+ S N + G IP S+ S+T L  L+LS N+  G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 881 PSST-QLQSFDVSSFAGNDLCG 901
           P S  QL S  + +  GN L G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSG 504

Length = 623

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 49.6 bits (119), Expect = 5e-08
 Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 2/42 (4%)

Query: 41 LGSEKEALLSFKRDL-KDPSNRLASWSGN-GDCCAWAGVFCD 80
          L  +++ALL+FK  L  DPS  L+SW+ +  D C+W GV CD
Sbjct: 1  LNDDRDALLAFKSSLNGDPSGALSSWNPSSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.0 bits (135), Expect = 7e-08
 Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 4/92 (4%)

Query: 578 LDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKF 637
           L L N    G    F+   I++ + L ++ L+ N + G +P    S  +L+ L LS N F
Sbjct: 423 LGLDNQGLRG----FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 638 TGNLPYSMGSLTSLVWLHLGENRLSGNILVSL 669
            G++P S+G LTSL  L+L  N LSG +  +L
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 49.1 bits (118), Expect = 1e-07
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 124 HLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNY 183
           +L  LDLS N    I     F  + NL+ L+LS   +  + P     L +L+ LDLS N 
Sbjct: 1   NLKSLDLSNNRLTVIP-DGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 184 L 184
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 48.5 bits (116), Expect = 9e-06
 Identities = 66/251 (26%), Positives = 101/251 (40%), Gaps = 25/251 (9%)

Query: 165 PHHLGNLSNLQFLDLSSNYLLY--VDNFWWLSGLSFLEHLDLRSVNLSKAFDWLM---VT 219
              L     LQ LDLS N L          L   S L+ L L +  L      L+   + 
Sbjct: 74  LQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLK 133

Query: 220 NKLPSLVELRLANCQLHHFSLLATAN----FSSLTVLDLSDNQFDKWFIPSWVFGPIPRG 275
           +  P+L +L L   +L   S  A A        L  L+L++N      I +     +  G
Sbjct: 134 DLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRA-----LAEG 188

Query: 276 LQNLTSLRHLGLDSNHFN----SSIPNWLYRFIHLEYLSLSNNSLQG----TIDSEALGN 327
           L+   +L  L L++N       S++   L     LE L+L +N+L       + S  L  
Sbjct: 189 LKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSP 248

Query: 328 LTSISWLDLSLN-MGIEGRIP--RSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNG 384
             S+  L LS N +  +G       +A   +L  L+LRG    +E +++L        N 
Sbjct: 249 NISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNE 308

Query: 385 LESLDLRSDSI 395
           LESL ++ DS 
Sbjct: 309 LESLWVKDDSF 319

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 48.3 bits (115), Expect = 2e-05
 Identities = 24/85 (28%), Positives = 49/85 (57%), Gaps = 1/85 (1%)

Query: 385 LESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLN 444
           ++ L L +  + G + + + + +++ +++ + NSI G IP SLG +++L VL ++ N  N
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 445 GTLSAIHFANLTKLSWFRVDGNKLT 469
           G++       LT L    ++GN L+
Sbjct: 480 GSIPE-SLGQLTSLRILNLNGNSLS 503

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 47.7 bits (113), Expect = 2e-05
 Identities = 86/310 (27%), Positives = 136/310 (43%), Gaps = 33/310 (10%)

Query: 622 MSYQNLKTLKLSNNKFTGNL--PYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLD 679
            S   L +L L +     +L    ++ +L  L  L L  NRL  NI   L   T L SLD
Sbjct: 64  SSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNIS-ELLELTNLTSLD 122

Query: 680 VGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIP 739
           +  N  + +IP  IG   S +  L L  NK    LP+ L +L  L+ LD++ N+LS  +P
Sbjct: 123 LDNNN-ITDIPPLIGLLKSNLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFNDLS-DLP 179

Query: 740 NCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDI 799
             ++NL+ +        S  +   LP ++ +                    L+ +  +D+
Sbjct: 180 KLLSNLSNLNNLDL---SGNKISDLPPEIEL--------------------LSALEELDL 216

Query: 800 SRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPES 859
           S N+   ++   ++NLK L  L  S N     +PESIG + +LE++D S NQ+S     S
Sbjct: 217 SNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS--SISS 272

Query: 860 MSSLTFLNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLCGAPLPKNCTENVSISEDEN 919
           + SLT L  L+LS N+L+  +P    L               A   K  +  ++ +   N
Sbjct: 273 LGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNSILLNNNILSN 332

Query: 920 GDEDEDEVDH 929
           G+    E   
Sbjct: 333 GETSSPEALS 342

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 46.5 bits (110), Expect = 5e-05
 Identities = 56/214 (26%), Positives = 95/214 (44%), Gaps = 31/214 (14%)

Query: 522 IRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLS 581
              L +   L  LDL  N++   I  L E T L  L + +NN++                
Sbjct: 86  SENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNIT---------------- 129

Query: 582 NNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNL 641
                  I P +        +L  L L+DN +   LP    +  NLK L LS N  + +L
Sbjct: 130 ------DIPPLIG---LLKSNLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFNDLS-DL 178

Query: 642 PYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMV 701
           P  + +L++L  L L  N++S ++   ++  +ALE LD+  N  +  + +        + 
Sbjct: 179 PKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSL--SNLKNLS 235

Query: 702 VLILRSNKFHGPLPTGLCDLAFLQILDIADNNLS 735
            L L +NK    LP  + +L+ L+ LD+++N +S
Sbjct: 236 GLELSNNKL-EDLPESIGNLSNLETLDLSNNQIS 268

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.3 bits (110), Expect = 7e-05
 Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 534 LDLGQNQIHGPIPN-LTEFTGLLILSVYSNNMSGPLPL----ISSNLVFLDLSNNLFSGS 588
           L L    + G IPN +++   L  +++  N++ G +P     I+S L  LDLS N F+GS
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITS-LEVLDLSYNSFNGS 481

Query: 589 ISPFLCYRINETKSLNALQLNDNYLNGELP 618
           I   L     +  SL  L LN N L+G +P
Sbjct: 482 IPESL----GQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 46.1 bits (109), Expect = 7e-05
 Identities = 47/146 (32%), Positives = 74/146 (50%), Gaps = 10/146 (6%)

Query: 114 KINPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSN 173
            +   L +L +L  LDLSFND     +P+   ++ NL  L+LS  +I   +P  +  LS 
Sbjct: 154 SLPSPLRNLPNLKNLDLSFNDLS--DLPKLLSNLSNLNNLDLSGNKI-SDLPPEIELLSA 210

Query: 174 LQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANC 233
           L+ LDLS+N ++ + +   LS L  L  L+L +  L    + +     L +L  L L+N 
Sbjct: 211 LEELDLSNNSIIELLSS--LSNLKNLSGLELSNNKLEDLPESI---GNLSNLETLDLSNN 265

Query: 234 QLHHFSLLATANFSSLTVLDLSDNQF 259
           Q+   S L   + ++L  LDLS N  
Sbjct: 266 QISSISSL--GSLTNLRELDLSGNSL 289

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.2 bits (95), Expect = 1e-04
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 281 SLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNM 340
           +L+ L L +N              +L+ L LS N+L  +I  EA   L S+  LDLS N 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.3 bits (107), Expect = 1e-04
 Identities = 71/222 (31%), Positives = 103/222 (46%), Gaps = 20/222 (9%)

Query: 118 SLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFL 177
            LL+L +L+ LDL  N+   I          NL+ L+LS  +I   +P  L NL NL+ L
Sbjct: 111 ELLELTNLTSLDLDNNNITDIPPLIGL-LKSNLKELDLSDNKIE-SLPSPLRNLPNLKNL 168

Query: 178 DLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHH 237
           DLS N L   D    LS LS L +LDL    +S     + + + L  L     +  +L  
Sbjct: 169 DLSFNDLS--DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIEL-- 224

Query: 238 FSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIP 297
             L + +N  +L+ L+LS+N+             +P  + NL++L  L L SN+  SSI 
Sbjct: 225 --LSSLSNLKNLSGLELSNNK----------LEDLPESIGNLSNLETLDL-SNNQISSIS 271

Query: 298 NWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLN 339
           +      +L  L LS NSL   +   AL  L     L+L L 
Sbjct: 272 SLGSL-TNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLT 312

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 44.4 bits (105), Expect = 2e-04
 Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 46/126 (36%)

Query: 712 GPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVI 771
           G +P  +  L  LQ ++++ N++ G IP  + ++T +                       
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLE---------------------- 469

Query: 772 LVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGR 831
                                   ++D+S N+F+G IP  +  L +L+ LN + NS +GR
Sbjct: 470 ------------------------VLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGR 505

Query: 832 IPESIG 837
           +P ++G
Sbjct: 506 VPAALG 511

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 408 NIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNK 467
           N+ +LD +NN +  +   +   L  L+VL ++ N L  ++S   F+ L  L    + GN 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 468 L 468
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 44.4 bits (105), Expect = 3e-04
 Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 2/87 (2%)

Query: 484 ALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHG 543
            LGL N  +    P  +   +HLQ + L  +SI    P     S + L+ LDL  N  +G
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL-GSITSLEVLDLSYNSFNG 480

Query: 544 PIP-NLTEFTGLLILSVYSNNMSGPLP 569
            IP +L + T L IL++  N++SG +P
Sbjct: 481 SIPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 22/59 (37%), Positives = 32/59 (54%)

Query: 818 LQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNL 876
           L+SL+ S N  T     +   + +L+ +D S N L+   PE+ S L  L  L+LS NNL
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 43.8 bits (103), Expect = 3e-04
 Identities = 74/267 (27%), Positives = 117/267 (43%), Gaps = 24/267 (8%)

Query: 193 LSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVL 252
            S LS L  LDL S +   + D       L  L  L L   +L   ++      ++LT L
Sbjct: 63  PSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLR-SNISELLELTNLTSL 121

Query: 253 DLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLS 312
           DL +N      IP  + G +   L+ L       L  N    S+P+ L    +L+ L LS
Sbjct: 122 DLDNNNITD--IPPLI-GLLKSNLKELD------LSDNKI-ESLPSPLRNLPNLKNLDLS 171

Query: 313 NNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISE 372
            N L  +   + L NL++++ LDLS N      +P  +  L  L+ L+L    + + +S 
Sbjct: 172 FNDL--SDLPKLLSNLSNLNNLDLSGN--KISDLPPEIELLSALEELDLSNNSIIELLSS 227

Query: 373 ILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLST 432
           + ++        L  L+L ++ +   L + +G   N+ TLD +NN I      SLG L+ 
Sbjct: 228 LSNL------KNLSGLELSNNKL-EDLPESIGNLSNLETLDLSNNQIS--SISSLGSLTN 278

Query: 433 LRVLRINDNKLNGTLSAIHFANLTKLS 459
           LR L ++ N L+  L  I    L    
Sbjct: 279 LRELDLSGNSLSNALPLIALLLLLLEL 305

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 43.7 bits (103), Expect = 5e-04
 Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 18/126 (14%)

Query: 191 WWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLT 250
           W++ GL  L++  LR    +   D     +KL  L  + L+   +      +  + +SL 
Sbjct: 418 WFIDGLG-LDNQGLRGFIPN---DI----SKLRHLQSINLSGNSIRGNIPPSLGSITSLE 469

Query: 251 VLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWL-YRFIHLEYL 309
           VLDLS N F+         G IP  L  LTSLR L L+ N  +  +P  L  R +H    
Sbjct: 470 VLDLSYNSFN---------GSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF 520

Query: 310 SLSNNS 315
           + ++N+
Sbjct: 521 NFTDNA 526

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.9 bits (101), Expect = 8e-04
 Identities = 38/119 (31%), Positives = 51/119 (42%), Gaps = 20/119 (16%)

Query: 249 LTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEY 308
           L  ++LS N            G IP  L ++TSL  L L  N FN SIP  L +   L  
Sbjct: 444 LQSINLSGNSIR---------GNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRI 494

Query: 309 LSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLS 367
           L+L+ NSL G + +   G L   +  + + N G           LC +  L   G HLS
Sbjct: 495 LNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG-----------LCGIPGLRACGPHLS 542

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 62/264 (23%), Positives = 95/264 (35%), Gaps = 51/264 (19%)

Query: 214 DWLMVTNKLPSLVELRLANCQLH--HFSLLATA--NFSSLTVLDLSDNQFDKWFIPSWVF 269
               +  KL  L  LRL    L       LA+A     SL  L LS N+  +  IP  + 
Sbjct: 14  RATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR--IPRGL- 70

Query: 270 GPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIH---LEYLSLSNNSLQGTIDSEALG 326
             + +GL     L+ L L  N         L   +    L+ L L+NN L          
Sbjct: 71  QSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRG-----L 125

Query: 327 NLTSISWLDLSLNMGIEGRIPRSMASLCNLKSL----NLRGVHLSQEISEILDIFSGCVS 382
            L +    DL                   L+ L    N       + +++ L       +
Sbjct: 126 RLLAKGLKDLP----------------PALEKLVLGRNRLEGASCEALAKAL------RA 163

Query: 383 NG-LESLDLRSDSIYG----HLTDQLGQFKNIVTLDFANNSI----VGLIPESLGQLSTL 433
           N  L+ L+L ++ I       L + L    N+  LD  NN +       + E+L  L +L
Sbjct: 164 NRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSL 223

Query: 434 RVLRINDNKL-NGTLSAIHFANLT 456
            VL + DN L +   +A+  A L+
Sbjct: 224 EVLNLGDNNLTDAGAAALASALLS 247

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

 Score = 41.5 bits (97), Expect = 0.002
 Identities = 48/199 (24%), Positives = 71/199 (35%), Gaps = 41/199 (20%)

Query: 575 LVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLN---GELPD-------CWMSY 624
           LV +DLS N         LC  I   ++L  +  +D +      EL           +  
Sbjct: 32  LVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKC 91

Query: 625 QNLKTLKLSNNKFTGNLPYSMGSL----TSLVWLHLGENRLS-------GNILVSL---- 669
             L+ + LS+N F    P  +G L    T LV L L  N L        G  L  L    
Sbjct: 92  PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNK 151

Query: 670 --KNCTALESLDVGENEFV-GNIPTW-IGERFSRMV-VLILRSNKFHGPLPTGLCDLAF- 723
              +   LE +  G N    G+             +  + ++ N   G  P G+  LAF 
Sbjct: 152 KAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQN---GIRPEGVTMLAFL 208

Query: 724 -------LQILDIADNNLS 735
                  L++LD+ DN  +
Sbjct: 209 GLFYSHSLEVLDLQDNTFT 227

Length = 388

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.0 bits (96), Expect = 0.003
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 578 LDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKF 637
           ++LS N   G+I P     +    SL  L L+ N  NG +P+      +L+ L L+ N  
Sbjct: 447 INLSGNSIRGNIPP----SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502

Query: 638 TGNLPYSMGSL 648
           +G +P ++G  
Sbjct: 503 SGRVPAALGGR 513

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 0.003
 Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 305 HLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRG 363
           +L+ L LSNN L   I   A   L ++  LDLS N  +    P + + L +L+SL+L G
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNN-LTSISPEAFSGLPSLRSLDLSG 57

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	979
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.88
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.88
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.87
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.81
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.79
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.7
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.66
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.66
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.65
PLN03150	623	hypothetical protein; Provisional	99.59
PLN03150	623	hypothetical protein; Provisional	99.42
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.27
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.25
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.22
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.2
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.17
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.07
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.01
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.99
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.96
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.92
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.91
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.82
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.79
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.73
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.72
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.71
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.68
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.66
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.56
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.53
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.5
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.48
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.39
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.32
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.23
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.15
KOG4341	483	consensus F-box protein containing LRR [General fu	98.02
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.0
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.94
PRK15386	426	type III secretion protein GogB; Provisional	97.9
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.84
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.82
KOG4341	483	consensus F-box protein containing LRR [General fu	97.81
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.79
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.75
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.63
PRK15386	426	type III secretion protein GogB; Provisional	97.52
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.47
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.47
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.42
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.95
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.48
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.21
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.17
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.99
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.85
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.84
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.57
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.39
KOG4308	478	consensus LRR-containing protein [Function unknown	93.45
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.08
KOG4308	478	consensus LRR-containing protein [Function unknown	92.4
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	90.9
KOG3864	221	consensus Uncharacterized conserved protein [Funct	88.8
smart00370	26	LRR Leucine-rich repeats, outliers.	84.99
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	84.99
KOG0473	326	consensus Leucine-rich repeat protein [Function un	81.44
smart00370	26	LRR Leucine-rich repeats, outliers.	80.51
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	80.51

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=5.9e-71  Score=697.18  Aligned_cols=609  Identities=36%  Similarity=0.576  Sum_probs=413.3

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCccccceecc
Q 042359            1 MAMKPNTSAVLVFDLLLFEILAIATISISFCNGSSYHVGCLGSEKEALLSFKRDLKDPSNRLASWSGNGDCCAWAGVFCD   80 (979)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~ll~~k~~~~~~~~~l~~W~~~~~~c~w~gv~c~   80 (979)
                      ||.|-..|..+.+.++++ +.+..+  .           -+++|++||++||+++.+|.+.+.+|+.+.+||.|.||+|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~-~~~~~~--~-----------~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~   66 (968)
T PLN00113          1 MAKKGPQHCPYLIFMLFF-LFLNFS--M-----------LHAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCN   66 (968)
T ss_pred             CCCCCCCCCChHHHHHHH-HHHHcc--C-----------CCHHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecC
Confidence            888876666664322222 222211  1           13689999999999998888889999888899999999997


Q ss_pred             CCCCcEEEEECCCCCCCCchhhHHHhhcccccccccccccCCCCCCEEeCCCCCCCCCCcccccc-CCCCCCEEEcCCCC
Q 042359           81 NITGHVLHLDLRNPFNYHKESEYEAIRRTALVGKINPSLLDLKHLSYLDLSFNDFQGIQIPRFFG-SMGNLRYLNLSRTR  159 (979)
Q Consensus        81 ~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~lp~~~~-~l~~L~~L~Ls~n~  159 (979)
                      + .++|+.|||++               +.+.|.+++++..+++|++|+|++|.+.+. +|..+. .+++|++|+|++|+
T Consensus        67 ~-~~~v~~L~L~~---------------~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~  129 (968)
T PLN00113         67 N-SSRVVSIDLSG---------------KNISGKISSAIFRLPYIQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNN  129 (968)
T ss_pred             C-CCcEEEEEecC---------------CCccccCChHHhCCCCCCEEECCCCccCCc-CChHHhccCCCCCEEECcCCc
Confidence            5 57999999998               478888888999999999999999999874 776554 89999999999999


Q ss_pred             CCCCCccccCCCCCCceEecCCCccccCCccccccCCCCCCEEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCC
Q 042359          160 IGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFS  239 (979)
Q Consensus       160 i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  239 (979)
                      +++.+|.  +.+++|++|++++|.+                                                   ++..
T Consensus       130 l~~~~p~--~~l~~L~~L~Ls~n~~---------------------------------------------------~~~~  156 (968)
T PLN00113        130 FTGSIPR--GSIPNLETLDLSNNML---------------------------------------------------SGEI  156 (968)
T ss_pred             cccccCc--cccCCCCEEECcCCcc---------------------------------------------------cccC
Confidence            8877774  3455566655555533                                                   2233


Q ss_pred             hhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCccccCCCCCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccc
Q 042359          240 LLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGT  319 (979)
Q Consensus       240 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  319 (979)
                      +..++.+++|++|++++|.+.         +.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.
T Consensus       157 p~~~~~l~~L~~L~L~~n~l~---------~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  227 (968)
T PLN00113        157 PNDIGSFSSLKVLDLGGNVLV---------GKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGE  227 (968)
T ss_pred             ChHHhcCCCCCEEECccCccc---------ccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCc
Confidence            334455555555555555554         44555555666666666666666555565566666666666666665554


Q ss_pred             cCcccccccCccCEEecCCCCCCcccCcccccCCCCCCeeeccCccCCcccchhhhhccccccCCCcEEECcCCcCcccc
Q 042359          320 IDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHL  399 (979)
Q Consensus       320 i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~  399 (979)
                      + |..++++++|++|++++| .+.+.+|..+.++++|++|++++|.+.                             +.+
T Consensus       228 ~-p~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~-----------------------------~~~  276 (968)
T PLN00113        228 I-PYEIGGLTSLNHLDLVYN-NLTGPIPSSLGNLKNLQYLFLYQNKLS-----------------------------GPI  276 (968)
T ss_pred             C-ChhHhcCCCCCEEECcCc-eeccccChhHhCCCCCCEEECcCCeee-----------------------------ccC
Confidence            4 555556666666666665 555555555555555555544444443                             334


Q ss_pred             ccccCCCCCCcEEeccCCcCcccCcccccCCCCCCEEEcCCCcCccccChhhhcCCCCCcEEEccCCcccccccCCCCCc
Q 042359          400 TDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPP  479 (979)
Q Consensus       400 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  479 (979)
                      |..+.++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.++. .+..+++|                     
T Consensus       277 p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L---------------------  334 (968)
T PLN00113        277 PPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV-ALTSLPRL---------------------  334 (968)
T ss_pred             chhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCCh-hHhcCCCC---------------------
Confidence            44555666777777777777766777677777777777777776644432 22222222                     


Q ss_pred             ccccEEecccccCCCCCChhhhCCCCccEEEccCCCCCCCCchHHHhcCCCccEEEcccCcCCCCCCCcccccCCcEEEe
Q 042359          480 FQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSV  559 (979)
Q Consensus       480 ~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l  559 (979)
                                                 +.|++++|.+.+..|..+                                   
T Consensus       335 ---------------------------~~L~L~~n~l~~~~p~~l-----------------------------------  352 (968)
T PLN00113        335 ---------------------------QVLQLWSNKFSGEIPKNL-----------------------------------  352 (968)
T ss_pred             ---------------------------CEEECcCCCCcCcCChHH-----------------------------------
Confidence                                       222222222221111111                                   


Q ss_pred             ecccCCCCCCccCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccc
Q 042359          560 YSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTG  639 (979)
Q Consensus       560 ~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  639 (979)
                                                            +.+++|+.|++++|++.+.+|..+..+++|+.|++++|++.+
T Consensus       353 --------------------------------------~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~  394 (968)
T PLN00113        353 --------------------------------------GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEG  394 (968)
T ss_pred             --------------------------------------hCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecc
Confidence                                                  112333333333333333444444444455555555555555


Q ss_pred             cCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCcccc
Q 042359          640 NLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLC  719 (979)
Q Consensus       640 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~  719 (979)
                      .+|..+..+++|+.|++++|++++.+|..+.++++|+.|++++|.+++.+|..+. .+++|+.|++++|++.+.+|..+ 
T Consensus       395 ~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~~~~~~p~~~-  472 (968)
T PLN00113        395 EIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW-DMPSLQMLSLARNKFFGGLPDSF-  472 (968)
T ss_pred             cCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhc-cCCCCcEEECcCceeeeecCccc-
Confidence            5555555555555555555555555555555555555555555555555555444 45566666666666665555544 


Q ss_pred             CCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEec
Q 042359          720 DLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDI  799 (979)
Q Consensus       720 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdL  799 (979)
                      ..++|+.|++++|++++.+|..+.+++.|                                              +.|+|
T Consensus       473 ~~~~L~~L~ls~n~l~~~~~~~~~~l~~L----------------------------------------------~~L~L  506 (968)
T PLN00113        473 GSKRLENLDLSRNQFSGAVPRKLGSLSEL----------------------------------------------MQLKL  506 (968)
T ss_pred             ccccceEEECcCCccCCccChhhhhhhcc----------------------------------------------CEEEC
Confidence            34778899999999988888888776665                                              78999


Q ss_pred             ccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCccccc
Q 042359          800 SRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGK  879 (979)
Q Consensus       800 s~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~  879 (979)
                      ++|++++.+|..++++++|++|+|++|+++|.+|..++.+++|+.|||++|+++|.+|..+..+++|++||+++|+++|.
T Consensus       507 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~  586 (968)
T PLN00113        507 SENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGS  586 (968)
T ss_pred             cCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccCCCccccccCCC-CCCCCC
Q 042359          880 IPSSTQLQSFDVSSFAGN-DLCGAP  903 (979)
Q Consensus       880 ip~~~~~~~~~~~~~~~n-~lcg~~  903 (979)
                      +|..+++.++...+|.|| .+||.+
T Consensus       587 ~p~~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        587 LPSTGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             CCCcchhcccChhhhcCCccccCCc
Confidence            999999999999999999 799865

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=7.7e-56  Score=559.60  Aligned_cols=515  Identities=33%  Similarity=0.511  Sum_probs=378.8

Q ss_pred             CCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCcccc-CCCCCCEEeccCCcCcccCchhhc
Q 042359          223 PSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQ-NLTSLRHLGLDSNHFNSSIPNWLY  301 (979)
Q Consensus       223 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~  301 (979)
                      .+++.|++++|.+++..+..+..+++|+.|++++|+++         +.+|..+. .+++|++|++++|++++.+|.  +
T Consensus        69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~---------~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~  137 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS---------GPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--G  137 (968)
T ss_pred             CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccC---------CcCChHHhccCCCCCEEECcCCccccccCc--c
Confidence            34566666666666666666666667777777766665         45555543 666666777666666665554  3


Q ss_pred             cCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCcccccCCCCCCeeeccCccCCcccchhhhhccccc
Q 042359          302 RFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCV  381 (979)
Q Consensus       302 ~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~  381 (979)
                      .+++|++|++++|.+.+.+ |..++++++|++|++++| .+.+.+|..+.++++|++|++++|.+.+.+|          
T Consensus       138 ~l~~L~~L~Ls~n~~~~~~-p~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p----------  205 (968)
T PLN00113        138 SIPNLETLDLSNNMLSGEI-PNDIGSFSSLKVLDLGGN-VLVGKIPNSLTNLTSLEFLTLASNQLVGQIP----------  205 (968)
T ss_pred             ccCCCCEEECcCCcccccC-ChHHhcCCCCCEEECccC-cccccCChhhhhCcCCCeeeccCCCCcCcCC----------
Confidence            4566666666666666555 555666666666666666 5555666666666665555555555554444          


Q ss_pred             cCCCcEEECcCCcCccccccccCCCCCCcEEeccCCcCcccCcccccCCCCCCEEEcCCCcCccccChhhhcCCCCCcEE
Q 042359          382 SNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWF  461 (979)
Q Consensus       382 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L  461 (979)
                                         ..++.+++|++|++++|.+.+.+|..++++++|++|++++|++.+.+|. .+.++++|+.|
T Consensus       206 -------------------~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L  265 (968)
T PLN00113        206 -------------------RELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS-SLGNLKNLQYL  265 (968)
T ss_pred             -------------------hHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccCh-hHhCCCCCCEE
Confidence                               3444445555555555555555555555555555555555555444443 34455555444


Q ss_pred             EccCCcccccccCCCCCcccccEEecccccCCCCCChhhhCCCCccEEEccCCCCCCCCchHHHhcCCCccEEEcccCcC
Q 042359          462 RVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQI  541 (979)
Q Consensus       462 ~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l  541 (979)
                      ++++|.+..                        .+|.++..+++|++|++++|.+.+.+|..+ ..+++|++|++++|.+
T Consensus       266 ~L~~n~l~~------------------------~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~l~~n~~  320 (968)
T PLN00113        266 FLYQNKLSG------------------------PIPPSIFSLQKLISLDLSDNSLSGEIPELV-IQLQNLEILHLFSNNF  320 (968)
T ss_pred             ECcCCeeec------------------------cCchhHhhccCcCEEECcCCeeccCCChhH-cCCCCCcEEECCCCcc
Confidence            444443321                        234445555666666666666665555443 2333444444444443


Q ss_pred             CCCCCCcccccCCcEEEeecccCCCCCCccCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccc
Q 042359          542 HGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCW  621 (979)
Q Consensus       542 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~  621 (979)
                      .                                            +.+|..+    ..+++|+.|++++|.+.+.+|..+
T Consensus       321 ~--------------------------------------------~~~~~~~----~~l~~L~~L~L~~n~l~~~~p~~l  352 (968)
T PLN00113        321 T--------------------------------------------GKIPVAL----TSLPRLQVLQLWSNKFSGEIPKNL  352 (968)
T ss_pred             C--------------------------------------------CcCChhH----hcCCCCCEEECcCCCCcCcCChHH
Confidence            3                                            3333322    336788888999999988999999


Q ss_pred             cCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccc
Q 042359          622 MSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMV  701 (979)
Q Consensus       622 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~  701 (979)
                      ..+++|+.|++++|++++.+|..+..+++|+.|++++|++.+.+|..+..+++|+.|++++|++++.+|..+. .+++|+
T Consensus       353 ~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~-~l~~L~  431 (968)
T PLN00113        353 GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT-KLPLVY  431 (968)
T ss_pred             hCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHh-cCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999887 799999


Q ss_pred             eeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeec
Q 042359          702 VLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSK  781 (979)
Q Consensus       702 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  781 (979)
                      .|++++|.+++.+|..+..+++|+.|++++|++.+.+|..++ .                                    
T Consensus       432 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~------------------------------------  474 (968)
T PLN00113        432 FLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG-S------------------------------------  474 (968)
T ss_pred             EEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc-c------------------------------------
Confidence            999999999999999999999999999999999988887542 1                                    


Q ss_pred             CccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCC
Q 042359          782 GEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMS  861 (979)
Q Consensus       782 ~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~  861 (979)
                                ..|+.||+++|++++.+|..+.++++|+.|+|++|++++.+|..++++++|++|||++|+++|.+|..++
T Consensus       475 ----------~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  544 (968)
T PLN00113        475 ----------KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFS  544 (968)
T ss_pred             ----------ccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHh
Confidence                      2348999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCEEEccCCcccccCCCC-ccCCCccccccCCCCCCC
Q 042359          862 SLTFLNHLNLSNNNLTGKIPSS-TQLQSFDVSSFAGNDLCG  901 (979)
Q Consensus       862 ~l~~L~~L~ls~N~l~g~ip~~-~~~~~~~~~~~~~n~lcg  901 (979)
                      .+++|+.|||++|+++|.+|.. ..+..+...++++|.+.|
T Consensus       545 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~  585 (968)
T PLN00113        545 EMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG  585 (968)
T ss_pred             CcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence            9999999999999999999964 345566667788886655

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-35  Score=312.91  Aligned_cols=366  Identities=24%  Similarity=0.255  Sum_probs=189.5

Q ss_pred             CCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccccCCCCCCEEEc
Q 042359          125 LSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDL  204 (979)
Q Consensus       125 L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~l  204 (979)
                      -+.||+++|.++.+ -+..|.++++|+.+++.+|.++ .+|...+...+|+.|+|.+|.|.++.... ++.++.|+.|||
T Consensus        80 t~~LdlsnNkl~~i-d~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~-L~~l~alrslDL  156 (873)
T KOG4194|consen   80 TQTLDLSNNKLSHI-DFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEE-LSALPALRSLDL  156 (873)
T ss_pred             eeeeeccccccccC-cHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHH-HHhHhhhhhhhh
Confidence            34566666666655 3555566666666666666665 45555555555666666666665554332 455555555555


Q ss_pred             cCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCccccCCCCCCE
Q 042359          205 RSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRH  284 (979)
Q Consensus       205 ~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l~~L~~  284 (979)
                      |.|.++.++.  ..+..-.++++|+|++|.|+.+....|..+.+|.+|.|+.|+++.+         -+..|.++++|+.
T Consensus       157 SrN~is~i~~--~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittL---------p~r~Fk~L~~L~~  225 (873)
T KOG4194|consen  157 SRNLISEIPK--PSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTL---------PQRSFKRLPKLES  225 (873)
T ss_pred             hhchhhcccC--CCCCCCCCceEEeeccccccccccccccccchheeeecccCccccc---------CHHHhhhcchhhh
Confidence            5555555422  1222334555555555555555555555555555555555555521         1233444555555


Q ss_pred             EeccCCcCcccCchhhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCcccccCCCCCCeeeccCc
Q 042359          285 LGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGV  364 (979)
Q Consensus       285 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~~l~~L~~L~L~~n  364 (979)
                      |+|..|++.-.---.|.++++|+.|.+..|.+. .++...|..+.++++|+|+.| .++..-..++.++++|+.|+++.|
T Consensus       226 LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~L~lS~N  303 (873)
T KOG4194|consen  226 LDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETN-RLQAVNEGWLFGLTSLEQLDLSYN  303 (873)
T ss_pred             hhccccceeeehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccc-hhhhhhcccccccchhhhhccchh
Confidence            555555554222334455555555555555555 333445555555555555555 555444555555555555555555


Q ss_pred             cCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCCCCcEEeccCCcCcccCcccccCCCCCCEEEcCCCcCc
Q 042359          365 HLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLN  444 (979)
Q Consensus       365 ~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  444 (979)
                      .+....+.    .+...++ |+.|+|+.|+++...+..|..+..|++|+|++|.+...-..+|..+++|++|||++|.+.
T Consensus       304 aI~rih~d----~Wsftqk-L~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls  378 (873)
T KOG4194|consen  304 AIQRIHID----SWSFTQK-LKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELS  378 (873)
T ss_pred             hhheeecc----hhhhccc-ceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEE
Confidence            55444333    3333333 555555555555555555555555555555555555444444555555555555555554


Q ss_pred             cccCh--hhhcCCCCCcEEEccCCcccccccCCCCCcccccEEecccccCCCCCChhhhCCCCccEEEcc
Q 042359          445 GTLSA--IHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLV  512 (979)
Q Consensus       445 ~~l~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls  512 (979)
                      +.+..  ..|.++++|+.|++.+|++..+...+|..+..|+.|++.+|.+...-|..|..+ .|++|-+.
T Consensus       379 ~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n  447 (873)
T KOG4194|consen  379 WCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN  447 (873)
T ss_pred             EEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence            43322  234455555555555555555544444444444444444444444444444444 44444443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=1.1e-38  Score=322.89  Aligned_cols=455  Identities=24%  Similarity=0.370  Sum_probs=222.8

Q ss_pred             CCccccCCCCCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCccccc
Q 042359          272 IPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMA  351 (979)
Q Consensus       272 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~  351 (979)
                      +|++++.+..++.++.++|++. .+|+.++.+.+|+.++.++|.+. .+ ++.++.+..|+.++..+| ++. ..|+.+.
T Consensus        83 lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el-~~~i~~~~~l~dl~~~~N-~i~-slp~~~~  157 (565)
T KOG0472|consen   83 LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-EL-PDSIGRLLDLEDLDATNN-QIS-SLPEDMV  157 (565)
T ss_pred             CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ec-CchHHHHhhhhhhhcccc-ccc-cCchHHH
Confidence            3444444444444444444443 33444444444444444444443 23 334444444444444444 332 2333344


Q ss_pred             CCCCCCeeeccCccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCCCCcEEeccCCcCcccCcccccCCC
Q 042359          352 SLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLS  431 (979)
Q Consensus       352 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~  431 (979)
                      ++.++..+++.+|++....|.    .+. +.. |++||...|-+ +.+|..++.+.+|..|++..|++. ..| .|.+|.
T Consensus       158 ~~~~l~~l~~~~n~l~~l~~~----~i~-m~~-L~~ld~~~N~L-~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs  228 (565)
T KOG0472|consen  158 NLSKLSKLDLEGNKLKALPEN----HIA-MKR-LKHLDCNSNLL-ETLPPELGGLESLELLYLRRNKIR-FLP-EFPGCS  228 (565)
T ss_pred             HHHHHHHhhccccchhhCCHH----HHH-HHH-HHhcccchhhh-hcCChhhcchhhhHHHHhhhcccc-cCC-CCCccH
Confidence            444444444444444333332    111 111 44444444433 245556666666667777777666 334 466666


Q ss_pred             CCCEEEcCCCcCccccChhhhcCCCCCcEEEccCCcccccccCCCCCcccccEEecccccCCCCCChhhhCCCCccEEEc
Q 042359          432 TLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYL  511 (979)
Q Consensus       432 ~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~L  511 (979)
                      .|+++.+..|+|. .+|+....+++++..||+.+|+++                         ++|+.+.-+++|++||+
T Consensus       229 ~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-------------------------e~Pde~clLrsL~rLDl  282 (565)
T KOG0472|consen  229 LLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-------------------------EVPDEICLLRSLERLDL  282 (565)
T ss_pred             HHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-------------------------cCchHHHHhhhhhhhcc
Confidence            6777777766665 566655566666666666666655                         34444444444444444


Q ss_pred             cCCCCCCCCchHHHhcCCCccEEEcccCcCCCCCCCcccccCCcEEEeecccCCCCCCccCCCCcEEEcccccccccCCh
Q 042359          512 VNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISP  591 (979)
Q Consensus       512 s~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~  591 (979)
                      ++|.+++..+.  .+.+ .|+.|.+.+|.+...-.++-.               +.....+..|+. .+..-.++..-  
T Consensus       283 SNN~is~Lp~s--Lgnl-hL~~L~leGNPlrTiRr~ii~---------------~gT~~vLKyLrs-~~~~dglS~se--  341 (565)
T KOG0472|consen  283 SNNDISSLPYS--LGNL-HLKFLALEGNPLRTIRREIIS---------------KGTQEVLKYLRS-KIKDDGLSQSE--  341 (565)
T ss_pred             cCCccccCCcc--cccc-eeeehhhcCCchHHHHHHHHc---------------ccHHHHHHHHHH-hhccCCCCCCc--
Confidence            44444443322  1222 344444444433211000000               000000000000 00000000000  


Q ss_pred             hhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCC---CccEEEcCCcccccccccc
Q 042359          592 FLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLT---SLVWLHLGENRLSGNILVS  668 (979)
Q Consensus       592 ~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~---~L~~L~L~~n~l~~~~p~~  668 (979)
                              -.+-..-+.    ..+..| ......+.+.|++++-+++ .+|.......   -....+++.|++. ++|..
T Consensus       342 --------~~~e~~~t~----~~~~~~-~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~  406 (565)
T KOG0472|consen  342 --------GGTETAMTL----PSESFP-DIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKR  406 (565)
T ss_pred             --------ccccccCCC----CCCccc-chhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhh
Confidence                    000000000    000111 1112234444555554444 3343222111   2445555555555 45554


Q ss_pred             ccCCCCCCE-EeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhccc
Q 042359          669 LKNCTALES-LDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTG  747 (979)
Q Consensus       669 l~~l~~L~~-L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  747 (979)
                      +..++.+.+ +.+++|.+ +-+|..+. .+++|..|+|++|.+. .+|..++.+..|+.||+|.|+|. .+|+++..+..
T Consensus       407 L~~lkelvT~l~lsnn~i-sfv~~~l~-~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~  482 (565)
T KOG0472|consen  407 LVELKELVTDLVLSNNKI-SFVPLELS-QLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQT  482 (565)
T ss_pred             hHHHHHHHHHHHhhcCcc-ccchHHHH-hhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHH
Confidence            444444433 23333333 24444444 5666666666666555 56777777777888888888886 77777665444


Q ss_pred             CcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCc
Q 042359          748 MVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNS  827 (979)
Q Consensus       748 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~  827 (979)
                      +                                              +.+-.++|++...-|..+.++.+|+.|||.+|.
T Consensus       483 l----------------------------------------------Etllas~nqi~~vd~~~l~nm~nL~tLDL~nNd  516 (565)
T KOG0472|consen  483 L----------------------------------------------ETLLASNNQIGSVDPSGLKNMRNLTTLDLQNND  516 (565)
T ss_pred             H----------------------------------------------HHHHhccccccccChHHhhhhhhcceeccCCCc
Confidence            3                                              344455677775555558889999999999999


Q ss_pred             ceeccCCCCCccCCCCEEECcCCccc
Q 042359          828 FTGRIPESIGVMRSLESIDFSANQLS  853 (979)
Q Consensus       828 l~~~ip~~~~~l~~L~~LdLs~N~l~  853 (979)
                      +. .||..+|++++|+.|+|++|.+.
T Consensus       517 lq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  517 LQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hh-hCChhhccccceeEEEecCCccC
Confidence            98 88889999999999999999987

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=1.8e-37  Score=314.22  Aligned_cols=477  Identities=25%  Similarity=0.365  Sum_probs=300.3

Q ss_pred             CCCCEEECCCCCCCCCCCCCcccccCCccccCCCCCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCccccc
Q 042359          247 SSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALG  326 (979)
Q Consensus       247 ~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~  326 (979)
                      ..|+.+.+++|.+..          +-+.+.++..|.+|++.+|++. ..|++++.+..++.++.++|+++ .+ |+.++
T Consensus        45 v~l~~lils~N~l~~----------l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~l-p~~i~  111 (565)
T KOG0472|consen   45 VDLQKLILSHNDLEV----------LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-EL-PEQIG  111 (565)
T ss_pred             cchhhhhhccCchhh----------ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hc-cHHHh
Confidence            456666667776653          3345566677777777777765 45666777777777777777776 55 66677


Q ss_pred             ccCccCEEecCCCCCCcccCcccccCCCCCCeeeccCccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCC
Q 042359          327 NLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQF  406 (979)
Q Consensus       327 ~l~~L~~L~L~~n~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l  406 (979)
                      .+.+|..++.++| .+. ..|+.++.+..+..++..+|++...                              |..+.++
T Consensus       112 s~~~l~~l~~s~n-~~~-el~~~i~~~~~l~dl~~~~N~i~sl------------------------------p~~~~~~  159 (565)
T KOG0472|consen  112 SLISLVKLDCSSN-ELK-ELPDSIGRLLDLEDLDATNNQISSL------------------------------PEDMVNL  159 (565)
T ss_pred             hhhhhhhhhcccc-cee-ecCchHHHHhhhhhhhccccccccC------------------------------chHHHHH
Confidence            7777777777776 444 3455555555555555555555433                              3344444


Q ss_pred             CCCcEEeccCCcCcccCcccccCCCCCCEEEcCCCcCccccChhhhcCCCCCcEEEccCCcccccccCCCCCcccccEEe
Q 042359          407 KNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALG  486 (979)
Q Consensus       407 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~  486 (979)
                      .++..+++.+|+++...|..+. ++.|++||...|-+. .+|+ .++.+.+|+.|++..|++..                
T Consensus       160 ~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~-~lg~l~~L~~LyL~~Nki~~----------------  220 (565)
T KOG0472|consen  160 SKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPP-ELGGLESLELLYLRRNKIRF----------------  220 (565)
T ss_pred             HHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCCh-hhcchhhhHHHHhhhccccc----------------
Confidence            5555555555555544333332 555555555555543 4444 35555555555555555442                


Q ss_pred             cccccCCCCCChhhhCCCCccEEEccCCCCCCCCchHHHhcCCCccEEEcccCcCCCCCCCcccccCCcEEEeecccCCC
Q 042359          487 LRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSG  566 (979)
Q Consensus       487 l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~  566 (979)
                               +| .|.+|..|++++++.|++.- .|......++++.+||+.+|++...+..+..+               
T Consensus       221 ---------lP-ef~gcs~L~Elh~g~N~i~~-lpae~~~~L~~l~vLDLRdNklke~Pde~clL---------------  274 (565)
T KOG0472|consen  221 ---------LP-EFPGCSLLKELHVGENQIEM-LPAEHLKHLNSLLVLDLRDNKLKEVPDEICLL---------------  274 (565)
T ss_pred             ---------CC-CCCccHHHHHHHhcccHHHh-hHHHHhcccccceeeeccccccccCchHHHHh---------------
Confidence                     12 23344445555555555433 34455556667777777777776544444333               


Q ss_pred             CCCccCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccccC-----CCCCCE----EEccCCcc
Q 042359          567 PLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMS-----YQNLKT----LKLSNNKF  637 (979)
Q Consensus       567 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~-----l~~L~~----L~Ls~N~l  637 (979)
                            .+|++||+|+|.+++..+     .++++ .|+.|.+.+|.+...--+.+..     ++.|+.    =.++.-.-
T Consensus       275 ------rsL~rLDlSNN~is~Lp~-----sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~  342 (565)
T KOG0472|consen  275 ------RSLERLDLSNNDISSLPY-----SLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEG  342 (565)
T ss_pred             ------hhhhhhcccCCccccCCc-----ccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcc
Confidence                  345555555555554322     23445 6777788888764211100000     001111    00111100


Q ss_pred             ----cccCC-c---ccCCCCCccEEEcCCccccccccccccCCCC---CCEEeccCCcccccCChhHHHhhhccceeecc
Q 042359          638 ----TGNLP-Y---SMGSLTSLVWLHLGENRLSGNILVSLKNCTA---LESLDVGENEFVGNIPTWIGERFSRMVVLILR  706 (979)
Q Consensus       638 ----~~~~p-~---~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~---L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~  706 (979)
                          .+..| .   ....+.+.+.|++++-+++ .+|........   ....++++|++. ++|..+. .+..+...-+.
T Consensus       343 ~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~-~lkelvT~l~l  419 (565)
T KOG0472|consen  343 GTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLV-ELKELVTDLVL  419 (565)
T ss_pred             cccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhH-HHHHHHHHHHh
Confidence                01111 1   1233557888899888888 45654443333   678999999997 8898776 45555554444


Q ss_pred             CCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccch
Q 042359          707 SNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVD  786 (979)
Q Consensus       707 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  786 (979)
                      .|+..+.+|..++.++.|..|++++|.+. .+|..++.+..|                                      
T Consensus       420 snn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~L--------------------------------------  460 (565)
T KOG0472|consen  420 SNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRL--------------------------------------  460 (565)
T ss_pred             hcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhh--------------------------------------
Confidence            44444478888999999999999998875 788887766555                                      


Q ss_pred             hhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCC
Q 042359          787 YEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFL  866 (979)
Q Consensus       787 ~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L  866 (979)
                              +.||||+|+|. .+|..+..+..++.+-.++|++....|+.++++.+|..|||.+|.+. .||..+++|++|
T Consensus       461 --------q~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL  530 (565)
T KOG0472|consen  461 --------QTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNL  530 (565)
T ss_pred             --------heecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccce
Confidence                    89999999998 89999988888888888889999666666999999999999999998 799999999999


Q ss_pred             CEEEccCCccc
Q 042359          867 NHLNLSNNNLT  877 (979)
Q Consensus       867 ~~L~ls~N~l~  877 (979)
                      ++|++++|+|.
T Consensus       531 ~hLeL~gNpfr  541 (565)
T KOG0472|consen  531 RHLELDGNPFR  541 (565)
T ss_pred             eEEEecCCccC
Confidence            99999999998

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-34  Score=305.16  Aligned_cols=374  Identities=19%  Similarity=0.216  Sum_probs=298.8

Q ss_pred             cccCCCcEEECcCCcCccccccccCCCCCCcEEeccCCcCcccCcccccCCCCCCEEEcCCCcCccccChhhhcCCCCCc
Q 042359          380 CVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLS  459 (979)
Q Consensus       380 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~  459 (979)
                      .++..-+.|++++|++...-+..|.++++|+++++.+|.++ .+|...+...+|+.|+|.+|.|. ++....+..++.|+
T Consensus        75 ~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alr  152 (873)
T KOG4194|consen   75 FLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALR  152 (873)
T ss_pred             cCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhh
Confidence            34444778999999999888889999999999999999998 56775555667999999999998 77777899999999


Q ss_pred             EEEccCCcccccccCCCCCcccccEEecccccCCCCCChhhhCCCCccEEEccCCCCCCCCchHHHhcCCCccEEEcccC
Q 042359          460 WFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQN  539 (979)
Q Consensus       460 ~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n  539 (979)
                      .||++.|.+..+....|..-.++++|++++|.++..-.+.|.++.+|..|.|++|+++...+..| ..+++|+.|+|..|
T Consensus       153 slDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~F-k~L~~L~~LdLnrN  231 (873)
T KOG4194|consen  153 SLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSF-KRLPKLESLDLNRN  231 (873)
T ss_pred             hhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHh-hhcchhhhhhcccc
Confidence            99999999998888777776777777777777777666666677777777777777766544333 44566666666666


Q ss_pred             cCCCCCCCcccccCCcEEEeecccCCCCCCccCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCc
Q 042359          540 QIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPD  619 (979)
Q Consensus       540 ~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~  619 (979)
                      ++.-.                                              +.  -.|..+++|+.|.|..|++...-..
T Consensus       232 ~iriv----------------------------------------------e~--ltFqgL~Sl~nlklqrN~I~kL~DG  263 (873)
T KOG4194|consen  232 RIRIV----------------------------------------------EG--LTFQGLPSLQNLKLQRNDISKLDDG  263 (873)
T ss_pred             ceeee----------------------------------------------hh--hhhcCchhhhhhhhhhcCcccccCc
Confidence            55311                                              00  0234467788888888888766667


Q ss_pred             cccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhc
Q 042359          620 CWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSR  699 (979)
Q Consensus       620 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~  699 (979)
                      .|..+.++++|+|+.|+++..-..++.+++.|+.|++++|.+...-++++..+++|++|+|++|+++ .+++.-+..+..
T Consensus       264 ~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~-~l~~~sf~~L~~  342 (873)
T KOG4194|consen  264 AFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT-RLDEGSFRVLSQ  342 (873)
T ss_pred             ceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc-cCChhHHHHHHH
Confidence            8888999999999999999777888999999999999999999888999999999999999999998 566655558999


Q ss_pred             cceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEe
Q 042359          700 MVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVV  779 (979)
Q Consensus       700 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  779 (979)
                      |+.|+|++|.+...-...|..+++|+.|||++|.++..|.+.-.-                                   
T Consensus       343 Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~-----------------------------------  387 (873)
T KOG4194|consen  343 LEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVA-----------------------------------  387 (873)
T ss_pred             hhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhh-----------------------------------
Confidence            999999999998776777888999999999999998766542111                                   


Q ss_pred             ecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcC
Q 042359          780 SKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSA  849 (979)
Q Consensus       780 ~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~  849 (979)
                             |.+ ++.|+.|+|.+|++....-..|..+.+|+.|||.+|.|...-|.+|..+ .|+.|-++.
T Consensus       388 -------f~g-l~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  388 -------FNG-LPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS  448 (873)
T ss_pred             -------hcc-chhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence                   111 4456889999999985555788899999999999999998889999888 888877654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=6.2e-36  Score=333.55  Aligned_cols=244  Identities=27%  Similarity=0.406  Sum_probs=202.4

Q ss_pred             CCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCc
Q 042359          572 SSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSL  651 (979)
Q Consensus       572 ~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  651 (979)
                      +.+|+++++++|++++. |.+++    .+.+|+.++..+|+++ .+|..+...++|+.|.+..|.+. .+|.....+++|
T Consensus       240 p~nl~~~dis~n~l~~l-p~wi~----~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL  312 (1081)
T KOG0618|consen  240 PLNLQYLDISHNNLSNL-PEWIG----ACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSL  312 (1081)
T ss_pred             cccceeeecchhhhhcc-hHHHH----hcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCccccccee
Confidence            46788888888888754 46554    4899999999999995 78888888999999999999998 677788889999


Q ss_pred             cEEEcCCccccccccc-cccCCC-CCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEc
Q 042359          652 VWLHLGENRLSGNILV-SLKNCT-ALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDI  729 (979)
Q Consensus       652 ~~L~L~~n~l~~~~p~-~l~~l~-~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  729 (979)
                      ++|+|..|++.. +|+ .+.-.. +|+.|+.+.|++. ..|..-.+..+.|+.|.+.+|.++...-+.+.+.++|+.|+|
T Consensus       313 ~tLdL~~N~L~~-lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhL  390 (1081)
T KOG0618|consen  313 RTLDLQSNNLPS-LPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHL  390 (1081)
T ss_pred             eeeeehhccccc-cchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeee
Confidence            999999999984 554 333333 3778888888887 566555557889999999999999888788899999999999


Q ss_pred             cCCccccccCc-chhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccc
Q 042359          730 ADNNLSGAIPN-CINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKI  808 (979)
Q Consensus       730 s~n~l~~~~p~-~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~i  808 (979)
                      ++|++. .+|. ++.++..|                                              +.|+||+|+++ .+
T Consensus       391 syNrL~-~fpas~~~kle~L----------------------------------------------eeL~LSGNkL~-~L  422 (1081)
T KOG0618|consen  391 SYNRLN-SFPASKLRKLEEL----------------------------------------------EELNLSGNKLT-TL  422 (1081)
T ss_pred             cccccc-cCCHHHHhchHHh----------------------------------------------HHHhcccchhh-hh
Confidence            999996 5554 45554444                                              88999999999 89


Q ss_pred             cccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCccccc-CCCCCCCCCCCCEEEccCCc
Q 042359          809 PLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGE-IPESMSSLTFLNHLNLSNNN  875 (979)
Q Consensus       809 p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~-ip~~l~~l~~L~~L~ls~N~  875 (979)
                      |.++.++..|++|...+|++. ..| .+.++++|+.+|+|.|+|+.. +|..... +.|++|||++|.
T Consensus       423 p~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  423 PDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT  487 (1081)
T ss_pred             hHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence            999999999999999999999 778 799999999999999999865 4444333 899999999997

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=1.5e-33  Score=314.63  Aligned_cols=399  Identities=24%  Similarity=0.323  Sum_probs=278.7

Q ss_pred             ccCCCCCCcEEeccCCcCcccCcccccCCCCCCEEEcCCCcCccccChhhhcCCCCCcEEEccCCcccccccCCCCCccc
Q 042359          402 QLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQ  481 (979)
Q Consensus       402 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~  481 (979)
                      ...++.+|+++.|.+|.+. ..|..+..+++|++|+++.|++. .+|. .+..+..++++..++|......     +...
T Consensus        86 s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl-~i~~lt~~~~~~~s~N~~~~~l-----g~~~  157 (1081)
T KOG0618|consen   86 SCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPL-VIEVLTAEEELAASNNEKIQRL-----GQTS  157 (1081)
T ss_pred             hhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCch-hHHhhhHHHHHhhhcchhhhhh-----cccc
Confidence            3445555666666655555 44555666666666666666664 4444 4555555666666666111000     0111


Q ss_pred             ccEEecccccCCCCCChhhhCCCCccEEEccCCCCCCCCchHHHhcCCCccEEEcccCcCCCCCCCcccccCCcEEEeec
Q 042359          482 LVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYS  561 (979)
Q Consensus       482 L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~  561 (979)
                      ++.+++..+.+.+.++.....+++  .|+|++|.+...    -...+.+|+.+....|++...                 
T Consensus       158 ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~----dls~~~~l~~l~c~rn~ls~l-----------------  214 (1081)
T KOG0618|consen  158 IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVL----DLSNLANLEVLHCERNQLSEL-----------------  214 (1081)
T ss_pred             chhhhhhhhhcccchhcchhhhhe--eeecccchhhhh----hhhhccchhhhhhhhcccceE-----------------
Confidence            444555555555555554444444  466666655411    112334444444444443311                 


Q ss_pred             ccCCCCCCccCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccC
Q 042359          562 NNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNL  641 (979)
Q Consensus       562 n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  641 (979)
                             ....++++.|+.++|.+....+...      ..+|+.++++.|+++ .+|++++.+.+|+.++..+|+++ .+
T Consensus       215 -------~~~g~~l~~L~a~~n~l~~~~~~p~------p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~l  279 (1081)
T KOG0618|consen  215 -------EISGPSLTALYADHNPLTTLDVHPV------PLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-AL  279 (1081)
T ss_pred             -------EecCcchheeeeccCcceeeccccc------cccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hh
Confidence                   1113578888888888774333222      468999999999999 56799999999999999999996 78


Q ss_pred             CcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhc-cceeeccCCcccCCCCccccC
Q 042359          642 PYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSR-MVVLILRSNKFHGPLPTGLCD  720 (979)
Q Consensus       642 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~-L~~L~L~~n~l~~~~p~~l~~  720 (979)
                      |..+...++|+.|.+.+|.+. .+|......++|++|+|..|++. .+|+.++..... |+.|+.+.|++....--+=..
T Consensus       280 p~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~  357 (1081)
T KOG0618|consen  280 PLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENN  357 (1081)
T ss_pred             HHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchh
Confidence            988889999999999999998 57778888999999999999997 788766544443 788888888887433222234


Q ss_pred             CCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecc
Q 042359          721 LAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDIS  800 (979)
Q Consensus       721 l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs  800 (979)
                      .+.|+.|.+.+|.++...=+.+.+                                              +..|+.|+|+
T Consensus       358 ~~~Lq~LylanN~Ltd~c~p~l~~----------------------------------------------~~hLKVLhLs  391 (1081)
T KOG0618|consen  358 HAALQELYLANNHLTDSCFPVLVN----------------------------------------------FKHLKVLHLS  391 (1081)
T ss_pred             hHHHHHHHHhcCcccccchhhhcc----------------------------------------------ccceeeeeec
Confidence            577999999999987543222222                                              3456999999


Q ss_pred             cCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCcccc-c
Q 042359          801 RNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTG-K  879 (979)
Q Consensus       801 ~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g-~  879 (979)
                      +|++.......+.++..|+.|+||+|+++ .+|.++.++..|++|...+|++. ..| ++..+++|+++|||.|+|+- .
T Consensus       392 yNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~  468 (1081)
T KOG0618|consen  392 YNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVT  468 (1081)
T ss_pred             ccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhh
Confidence            99999444456789999999999999999 89999999999999999999999 677 88999999999999999984 5


Q ss_pred             CCCCccCCCccccccCCC
Q 042359          880 IPSSTQLQSFDVSSFAGN  897 (979)
Q Consensus       880 ip~~~~~~~~~~~~~~~n  897 (979)
                      +|....-.++...++.||
T Consensus       469 l~~~~p~p~LkyLdlSGN  486 (1081)
T KOG0618|consen  469 LPEALPSPNLKYLDLSGN  486 (1081)
T ss_pred             hhhhCCCcccceeeccCC
Confidence            555444356666677888

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=1.1e-31  Score=285.50  Aligned_cols=362  Identities=25%  Similarity=0.358  Sum_probs=192.4

Q ss_pred             CCCCcEEeccCCcCc-ccCcccccCCCCCCEEEcCCCcCccccChhhhcCCCCCcEEEccCCcccccccCCCCCcccccE
Q 042359          406 FKNIVTLDFANNSIV-GLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVA  484 (979)
Q Consensus       406 l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~  484 (979)
                      ++-.+-.|+++|.++ +..|....++++++.|.|...++. .+|. .++.+.+|+.|.+++|.+..              
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPe-EL~~lqkLEHLs~~HN~L~~--------------   69 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPE-ELSRLQKLEHLSMAHNQLIS--------------   69 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChH-HHHHHhhhhhhhhhhhhhHh--------------
Confidence            455677888888888 567888888888888888888875 5665 67888888888888887763              


Q ss_pred             EecccccCCCCCChhhhCCCCccEEEccCCCCCCC-CchHHHhcCCCccEEEcccCcCCCCCCCcccccCCcEEEeeccc
Q 042359          485 LGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDI-FPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNN  563 (979)
Q Consensus       485 L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~l~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~  563 (979)
                                 +-+.+..++.|+.+.+..|++... +|..++ .+..|..||||+|++...+..+...+++-.|++++|+
T Consensus        70 -----------vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~  137 (1255)
T KOG0444|consen   70 -----------VHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN  137 (1255)
T ss_pred             -----------hhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc
Confidence                       223355567777777777776432 233332 3566777777777776554455555555555555555


Q ss_pred             CCCCCCcc---CCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCccc-c
Q 042359          564 MSGPLPLI---SSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFT-G  639 (979)
Q Consensus       564 l~~~~~~~---~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~  639 (979)
                      +....-..   +..|-.||||+|++....| .+.    .+..|++|+|++|.+.-..-..+..+++|+.|.+++.+-+ .
T Consensus       138 IetIPn~lfinLtDLLfLDLS~NrLe~LPP-Q~R----RL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~  212 (1255)
T KOG0444|consen  138 IETIPNSLFINLTDLLFLDLSNNRLEMLPP-QIR----RLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLD  212 (1255)
T ss_pred             cccCCchHHHhhHhHhhhccccchhhhcCH-HHH----HHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhh
Confidence            54332222   2333444455544432222 211    1344444444444433221122223344444444443322 2


Q ss_pred             cCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCcccc
Q 042359          640 NLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLC  719 (979)
Q Consensus       640 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~  719 (979)
                      .+|.++..+.+|..+|++.|.+. ..|+.+-++.+|+.|+||+|+++ .+....+ ...+|+.|+++.|+++ .+|..++
T Consensus       213 N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~-~W~~lEtLNlSrNQLt-~LP~avc  288 (1255)
T KOG0444|consen  213 NIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEG-EWENLETLNLSRNQLT-VLPDAVC  288 (1255)
T ss_pred             cCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHH-HHhhhhhhccccchhc-cchHHHh
Confidence            34444444444444444444444 34444444444444444444444 3332222 2344444444444444 4444444


Q ss_pred             CCCCccEEEccCCccc-cccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEe
Q 042359          720 DLAFLQILDIADNNLS-GAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMID  798 (979)
Q Consensus       720 ~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Ld  798 (979)
                      .++.|+.|.+.+|+++ .-||..|+.+.+|                                              +.+.
T Consensus       289 KL~kL~kLy~n~NkL~FeGiPSGIGKL~~L----------------------------------------------evf~  322 (1255)
T KOG0444|consen  289 KLTKLTKLYANNNKLTFEGIPSGIGKLIQL----------------------------------------------EVFH  322 (1255)
T ss_pred             hhHHHHHHHhccCcccccCCccchhhhhhh----------------------------------------------HHHH
Confidence            4444444444444443 1234444443333                                              3444


Q ss_pred             cccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcc
Q 042359          799 ISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQL  852 (979)
Q Consensus       799 Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l  852 (979)
                      .++|++. ..|+.+..|..|+.|.|++|++- .+|+++.-|+.|+.|||..|.-
T Consensus       323 aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpn  374 (1255)
T KOG0444|consen  323 AANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPN  374 (1255)
T ss_pred             hhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcC
Confidence            5555555 55555555555555555555555 5555555555555555555543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=5.4e-31  Score=280.15  Aligned_cols=369  Identities=25%  Similarity=0.379  Sum_probs=228.5

Q ss_pred             cCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccccCCCCC
Q 042359          120 LDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFL  199 (979)
Q Consensus       120 ~~l~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L  199 (979)
                      +-|+..|-.|+++|.+++...|.....++.++.|.|...++. .+|+.++.|.+|++|.+++|++..+.+          
T Consensus         4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhG----------   72 (1255)
T KOG0444|consen    4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHG----------   72 (1255)
T ss_pred             cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhh----------
Confidence            346677888999999997778999999999999999999887 789999999999999999988765543          


Q ss_pred             CEEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCC-ChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCccccC
Q 042359          200 EHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHF-SLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQN  278 (979)
Q Consensus       200 ~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~  278 (979)
                                        .+..++.|+.+.+..|++... +|..+-.+..|+.||||+|++.+          +|..+..
T Consensus        73 ------------------ELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~E----------vP~~LE~  124 (1255)
T KOG0444|consen   73 ------------------ELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLRE----------VPTNLEY  124 (1255)
T ss_pred             ------------------hhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhh----------cchhhhh
Confidence                              233445555555555544322 23455566777777777777643          6666666


Q ss_pred             CCCCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCcccccCCCCCCe
Q 042359          279 LTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKS  358 (979)
Q Consensus       279 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~~l~~L~~  358 (979)
                      -+++-.|+|++|+|..+.-+.+.+++.|-+|+|++|++. .+ |..+..+.+|++|+|++| .+...-...+..+++|+.
T Consensus       125 AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~L-PPQ~RRL~~LqtL~Ls~N-PL~hfQLrQLPsmtsL~v  201 (1255)
T KOG0444|consen  125 AKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-ML-PPQIRRLSMLQTLKLSNN-PLNHFQLRQLPSMTSLSV  201 (1255)
T ss_pred             hcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hc-CHHHHHHhhhhhhhcCCC-hhhHHHHhcCccchhhhh
Confidence            667777777777776443344456666677777777665 44 555666666666676666 333221222223333333


Q ss_pred             eeccCccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCCCCcEEeccCCcCcccCcccccCCCCCCEEEc
Q 042359          359 LNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRI  438 (979)
Q Consensus       359 L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  438 (979)
                      |.+++.+-+                            ..-+|..+..+.+|..+|++.|++. ..|+.+-++++|+.|+|
T Consensus       202 Lhms~TqRT----------------------------l~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNL  252 (1255)
T KOG0444|consen  202 LHMSNTQRT----------------------------LDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNL  252 (1255)
T ss_pred             hhcccccch----------------------------hhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheecc
Confidence            333332211                            1235556677777777777777776 56777777777777777


Q ss_pred             CCCcCccccChhhhcCCCCCcEEEccCCcccccccCCCCCcccccEEecccccCCCCCChhhhCCCCccEEEccCCCCCC
Q 042359          439 NDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISD  518 (979)
Q Consensus       439 ~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~l~~  518 (979)
                      ++|+|+ .+.. ....-.+|+.|+++.|+++                         .+|+.+..+               
T Consensus       253 S~N~it-eL~~-~~~~W~~lEtLNlSrNQLt-------------------------~LP~avcKL---------------  290 (1255)
T KOG0444|consen  253 SGNKIT-ELNM-TEGEWENLETLNLSRNQLT-------------------------VLPDAVCKL---------------  290 (1255)
T ss_pred             CcCcee-eeec-cHHHHhhhhhhccccchhc-------------------------cchHHHhhh---------------
Confidence            777776 3332 2233344555555555444                         334444444               


Q ss_pred             CCchHHHhcCCCccEEEcccCcCC--CCCCCcccccCCcEEEeecccCCCCCCccCCCCcEEEcccccccccCChhhhhc
Q 042359          519 IFPIRFLKSASQLKFLDLGQNQIH--GPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYR  596 (979)
Q Consensus       519 ~~~~~~~~~~~~L~~L~Ls~n~l~--~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~  596 (979)
                                +.|+.|.+.+|+++  |.+..+                                                
T Consensus       291 ----------~kL~kLy~n~NkL~FeGiPSGI------------------------------------------------  312 (1255)
T KOG0444|consen  291 ----------TKLTKLYANNNKLTFEGIPSGI------------------------------------------------  312 (1255)
T ss_pred             ----------HHHHHHHhccCcccccCCccch------------------------------------------------
Confidence                      44444555444443  111122                                                


Q ss_pred             ccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCcccc
Q 042359          597 INETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLS  662 (979)
Q Consensus       597 l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~  662 (979)
                       +.+..|+.+...+|.+. .+|+.++.|..|+.|.|+.|++. .+|+.+.-++.|+.||+..|.-.
T Consensus       313 -GKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  313 -GKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             -hhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence             33445555555555554 56666777777777777777766 56777777777777777776644

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.88  E-value=1e-24  Score=221.90  Aligned_cols=224  Identities=24%  Similarity=0.312  Sum_probs=151.0

Q ss_pred             ccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCC
Q 042359          597 INETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALE  676 (979)
Q Consensus       597 l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  676 (979)
                      |..++.|+.|++++|++++.-+.+|.+...+++|.|..|++...-...|.++.+|+.|+|++|+++...|..|..+.+|.
T Consensus       270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~  349 (498)
T KOG4237|consen  270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLS  349 (498)
T ss_pred             HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceee
Confidence            56789999999999999998899999999999999999999866677889999999999999999999999999999999


Q ss_pred             EEeccCCcccccC-ChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccc---cccCcchhhcccCcccc
Q 042359          677 SLDVGENEFVGNI-PTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLS---GAIPNCINNLTGMVTAC  752 (979)
Q Consensus       677 ~L~L~~N~l~~~i-p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~---~~~p~~~~~l~~l~~~~  752 (979)
                      +|++-.|++.... -.|+++-        ++.+...|..|-  +.-..++.++++++.+.   ...|++.+-.++-    
T Consensus       350 ~l~l~~Np~~CnC~l~wl~~W--------lr~~~~~~~~~C--q~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~----  415 (498)
T KOG4237|consen  350 TLNLLSNPFNCNCRLAWLGEW--------LRKKSVVGNPRC--QSPGFVRQIPISDVAFGDFRCGGPEELGCLTSS----  415 (498)
T ss_pred             eeehccCcccCccchHHHHHH--------HhhCCCCCCCCC--CCCchhccccchhccccccccCCccccCCCCCC----
Confidence            9999999886543 2444432        223332222221  12234555666655442   1223222111110    


Q ss_pred             cccccccccCCCCcccceeeeeeeEEeecCccchhhhhccce-eEEecccCcccccccccccCCCCCCEEeCCCCcceec
Q 042359          753 SFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLV-RMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGR  831 (979)
Q Consensus       753 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L-~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~  831 (979)
                              .-|.+                         .+-+ +...-|++.+. .+|..+-  ..-++|++.+|.++ .
T Consensus       416 --------~cP~~-------------------------c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~  458 (498)
T KOG4237|consen  416 --------PCPPP-------------------------CTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-S  458 (498)
T ss_pred             --------CCCCC-------------------------cchhhhhHhhcccchh-hcCCCCC--chhHHHhcccchhc-c
Confidence                    00000                         0000 22334444443 4454432  23467888888888 7


Q ss_pred             cCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCC
Q 042359          832 IPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNN  874 (979)
Q Consensus       832 ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N  874 (979)
                      +|.+  .+.+| .+|+|+|+++..--..|.++++|.+|-+|||
T Consensus       459 vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  459 VPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             cCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            7776  56777 7888888888666677888888888888886

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.88  E-value=3.6e-24  Score=217.96  Aligned_cols=289  Identities=21%  Similarity=0.206  Sum_probs=182.4

Q ss_pred             CCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCC-CccccCCccccccCCCCCCEE
Q 042359          124 HLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSS-NYLLYVDNFWWLSGLSFLEHL  202 (979)
Q Consensus       124 ~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~-n~i~~~~~~~~l~~l~~L~~L  202 (979)
                      .-..++|..|.|+.+ -|.+|+.+++||.||||+|+|+.+-|+.|.++++|..|.+.+ |+|.+++.             
T Consensus        68 ~tveirLdqN~I~~i-P~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k-------------  133 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSI-PPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK-------------  133 (498)
T ss_pred             cceEEEeccCCcccC-ChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh-------------
Confidence            456788899999987 378899999999999999999988899999998888877766 66666653             


Q ss_pred             EccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCc-cccCCCC
Q 042359          203 DLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPR-GLQNLTS  281 (979)
Q Consensus       203 ~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~-~l~~l~~  281 (979)
                                    ..|+++.+|+.|.+.-|++..+....|..+++|..|.+..|.+..          ++. .+..+..
T Consensus       134 --------------~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~----------i~~~tf~~l~~  189 (498)
T KOG4237|consen  134 --------------GAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQS----------ICKGTFQGLAA  189 (498)
T ss_pred             --------------hHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhh----------hccccccchhc
Confidence                          234555566666666666666666666666666666666665542          222 3444455


Q ss_pred             CCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCcccccCCCCCCeeec
Q 042359          282 LRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNL  361 (979)
Q Consensus       282 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~~l~~L~~L~L  361 (979)
                      ++.+.+..|.+..     ..+++.+...                                 ....|..++.........+
T Consensus       190 i~tlhlA~np~ic-----dCnL~wla~~---------------------------------~a~~~ietsgarc~~p~rl  231 (498)
T KOG4237|consen  190 IKTLHLAQNPFIC-----DCNLPWLADD---------------------------------LAMNPIETSGARCVSPYRL  231 (498)
T ss_pred             cchHhhhcCcccc-----ccccchhhhH---------------------------------HhhchhhcccceecchHHH
Confidence            5555555444211     1111111100                                 0011122222222222233


Q ss_pred             cCccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCCCCcEEeccCCcCcccCcccccCCCCCCEEEcCCC
Q 042359          362 RGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDN  441 (979)
Q Consensus       362 ~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n  441 (979)
                      ...++....+..+.......   ...+....+.........|..+++|++|++++|+++++-+.+|.+...+++|.|..|
T Consensus       232 ~~~Ri~q~~a~kf~c~~esl---~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N  308 (498)
T KOG4237|consen  232 YYKRINQEDARKFLCSLESL---PSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRN  308 (498)
T ss_pred             HHHHhcccchhhhhhhHHhH---HHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcc
Confidence            33333222222111110000   011111111122222345888999999999999999988889999999999999999


Q ss_pred             cCccccChhhhcCCCCCcEEEccCCcccccccCCCCCcccccEEecccccC
Q 042359          442 KLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYV  492 (979)
Q Consensus       442 ~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~  492 (979)
                      ++. .+....|.++..|+.|++.+|+|+...+..|.+...|.+|++-.|..
T Consensus       309 ~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  309 KLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             hHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence            987 67777899999999999999999988888888888888888876654

>PLN03210 Resistant to P

Probab=99.87  E-value=4.9e-21  Score=242.12  Aligned_cols=337  Identities=20%  Similarity=0.240  Sum_probs=162.7

Q ss_pred             ChhhhcCCCCCcEEEccCCccc------ccccCCCCC-cccccEEecccccCCCCCChhhhCCCCccEEEccCCCCCCCC
Q 042359          448 SAIHFANLTKLSWFRVDGNKLT------LGVKHDWIP-PFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIF  520 (979)
Q Consensus       448 ~~~~~~~l~~L~~L~L~~n~l~------~~~~~~~~~-~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~l~~~~  520 (979)
                      ....|.++++|+.|.+..+...      ...+..+.. +.+|+.|.+.++.+. .+|..+ ...+|+.|++.+|.+....
T Consensus       550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~L~  627 (1153)
T PLN03210        550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEKLW  627 (1153)
T ss_pred             cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCccccccc
Confidence            3345666666666666544321      111122222 234566666555443 345444 3566777777777765432


Q ss_pred             chHHHhcCCCccEEEcccCcCCCCCCCcccccCCcEEEeecccCCCCCCcc---CCCCcEEEcccccccccCChhhhhcc
Q 042359          521 PIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLI---SSNLVFLDLSNNLFSGSISPFLCYRI  597 (979)
Q Consensus       521 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~Ls~n~l~~~~~~~~~~~l  597 (979)
                      . .+ ..+++|+.|+++++...+.+|.++.+++|+.|++++|.....+|..   +.+|+.|++++|...+.+|..+    
T Consensus       628 ~-~~-~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i----  701 (1153)
T PLN03210        628 D-GV-HSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI----  701 (1153)
T ss_pred             c-cc-ccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC----
Confidence            2 22 3466677777776655555666656666666666666554444432   3455555555544433444321    


Q ss_pred             cCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCcccc-------cccccccc
Q 042359          598 NETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLS-------GNILVSLK  670 (979)
Q Consensus       598 ~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~-------~~~p~~l~  670 (979)
                       ++++|+.|++++|...+.+|..   ..+|++|++++|.+. .+|..+ .+++|++|++.++...       ...+....
T Consensus       702 -~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~  775 (1153)
T PLN03210        702 -NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTM  775 (1153)
T ss_pred             -CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhh
Confidence             2455555555555444334322   234555555555544 344333 3444555544442211       00111111


Q ss_pred             CCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcc
Q 042359          671 NCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVT  750 (979)
Q Consensus       671 ~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~  750 (979)
                      .+++|+.|++++|...+.+|.++. .+++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|..         
T Consensus       776 ~~~sL~~L~Ls~n~~l~~lP~si~-~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---------  844 (1153)
T PLN03210        776 LSPSLTRLFLSDIPSLVELPSSIQ-NLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---------  844 (1153)
T ss_pred             ccccchheeCCCCCCccccChhhh-CCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---------
Confidence            223444445544444444444443 34444444444443333444333 3444444444444332222211         


Q ss_pred             cccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCC-cce
Q 042359          751 ACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYN-SFT  829 (979)
Q Consensus       751 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N-~l~  829 (979)
                                                              ...++.|+|++|.++ .+|..++.+++|+.|+|++| ++.
T Consensus       845 ----------------------------------------~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~  883 (1153)
T PLN03210        845 ----------------------------------------STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ  883 (1153)
T ss_pred             ----------------------------------------ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC
Confidence                                                    122355666666665 45666666666666666653 333


Q ss_pred             eccCCCCCccCCCCEEECcCCc
Q 042359          830 GRIPESIGVMRSLESIDFSANQ  851 (979)
Q Consensus       830 ~~ip~~~~~l~~L~~LdLs~N~  851 (979)
                       .+|..+..+++|+.|++++|.
T Consensus       884 -~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        884 -RVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             -ccCcccccccCCCeeecCCCc
Confidence             455555566666666666553

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.87  E-value=8.6e-21  Score=239.96  Aligned_cols=336  Identities=19%  Similarity=0.204  Sum_probs=182.2

Q ss_pred             CCCcccccEEeccccc------CCCCCChhhhCC-CCccEEEccCCCCCCCCchHHHhcCCCccEEEcccCcCCCCCCCc
Q 042359          476 WIPPFQLVALGLRNCY------VGSRFPLWLYSQ-KHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNL  548 (979)
Q Consensus       476 ~~~~~~L~~L~l~~~~------~~~~~p~~l~~~-~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~l  548 (979)
                      |..+.+|+.|.+..+.      ....+|..+..+ .+|+.|++.++.+... |..+  ...+|+.|++.+|.+.......
T Consensus       554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~l-P~~f--~~~~L~~L~L~~s~l~~L~~~~  630 (1153)
T PLN03210        554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCM-PSNF--RPENLVKLQMQGSKLEKLWDGV  630 (1153)
T ss_pred             HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCC-CCcC--CccCCcEEECcCcccccccccc
Confidence            4445555555554332      112234433333 2355555555554333 2222  2345555555555554333344


Q ss_pred             ccccCCcEEEeecccCCCCCCcc--CCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCC
Q 042359          549 TEFTGLLILSVYSNNMSGPLPLI--SSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQN  626 (979)
Q Consensus       549 ~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~  626 (979)
                      ..+++|+.++++++...+.+|..  +++|+.|++++|.....+|..+    +.+++|+.|++++|...+.+|..+ ++++
T Consensus       631 ~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si----~~L~~L~~L~L~~c~~L~~Lp~~i-~l~s  705 (1153)
T PLN03210        631 HSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSI----QYLNKLEDLDMSRCENLEILPTGI-NLKS  705 (1153)
T ss_pred             ccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhh----hccCCCCEEeCCCCCCcCccCCcC-CCCC
Confidence            44555555555555444444432  3455555555554444444332    234555555555544444444433 4455


Q ss_pred             CCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCccc---c---cCChhHHHhhhcc
Q 042359          627 LKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFV---G---NIPTWIGERFSRM  700 (979)
Q Consensus       627 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~---~---~ip~~~~~~l~~L  700 (979)
                      |+.|++++|...+.+|..   .++|++|++++|.+. .+|..+ .+++|++|++.++...   +   .++.......++|
T Consensus       706 L~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL  780 (1153)
T PLN03210        706 LYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSL  780 (1153)
T ss_pred             CCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccc
Confidence            555555555443334421   234555555555543 334332 3444555554442210   0   0111111123455


Q ss_pred             ceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEee
Q 042359          701 VVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVS  780 (979)
Q Consensus       701 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  780 (979)
                      +.|++++|...+.+|..++++++|+.|++++|...+.+|..+ +                                    
T Consensus       781 ~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~------------------------------------  823 (1153)
T PLN03210        781 TRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-N------------------------------------  823 (1153)
T ss_pred             hheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-C------------------------------------
Confidence            555555555555555555555555555555554433444332 1                                    


Q ss_pred             cCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCC
Q 042359          781 KGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESM  860 (979)
Q Consensus       781 ~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l  860 (979)
                                ++.|+.|+|++|.....+|..   .++|+.|+|++|.++ .+|.+++.+++|+.|+|++|+--..+|..+
T Consensus       824 ----------L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~  889 (1153)
T PLN03210        824 ----------LESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNI  889 (1153)
T ss_pred             ----------ccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCccc
Confidence                      345589999998776677754   367999999999999 799999999999999999855444688888


Q ss_pred             CCCCCCCEEEccCCc
Q 042359          861 SSLTFLNHLNLSNNN  875 (979)
Q Consensus       861 ~~l~~L~~L~ls~N~  875 (979)
                      ..+++|+.+++++|.
T Consensus       890 ~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        890 SKLKHLETVDFSDCG  904 (1153)
T ss_pred             ccccCCCeeecCCCc
Confidence            999999999999885

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.87  E-value=1.5e-21  Score=227.57  Aligned_cols=240  Identities=26%  Similarity=0.329  Sum_probs=153.0

Q ss_pred             CcEEEeecccCCCCCCccCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEcc
Q 042359          554 LLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLS  633 (979)
Q Consensus       554 L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls  633 (979)
                      |+.|++.+|+++. +|..+++|++|++++|+++. +|..       .++|+.|++++|.+. .+|..   ..+|+.|+++
T Consensus       224 L~~L~L~~N~Lt~-LP~lp~~Lk~LdLs~N~Lts-LP~l-------p~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls  290 (788)
T PRK15387        224 ITTLVIPDNNLTS-LPALPPELRTLEVSGNQLTS-LPVL-------PPGLLELSIFSNPLT-HLPAL---PSGLCKLWIF  290 (788)
T ss_pred             CCEEEccCCcCCC-CCCCCCCCcEEEecCCccCc-ccCc-------ccccceeeccCCchh-hhhhc---hhhcCEEECc
Confidence            4444444444432 23334566666666666653 2321       245666666666665 33332   2456667777


Q ss_pred             CCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCC
Q 042359          634 NNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGP  713 (979)
Q Consensus       634 ~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~  713 (979)
                      +|+++ .+|..   +++|+.|++++|++++ +|..   ..+|+.|++++|.++ .+|..    ..+|+.|++++|++++ 
T Consensus       291 ~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~LP~l----p~~Lq~LdLS~N~Ls~-  356 (788)
T PRK15387        291 GNQLT-SLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SLPTL----PSGLQELSVSDNQLAS-  356 (788)
T ss_pred             CCccc-ccccc---ccccceeECCCCcccc-CCCC---cccccccccccCccc-ccccc----ccccceEecCCCccCC-
Confidence            77776 44532   3567777777777764 3332   234666777777776 45531    2467777777777773 


Q ss_pred             CCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccc
Q 042359          714 LPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNL  793 (979)
Q Consensus       714 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (979)
                      +|..   ..+|+.|++++|+++ .+|...                                                 ..
T Consensus       357 LP~l---p~~L~~L~Ls~N~L~-~LP~l~-------------------------------------------------~~  383 (788)
T PRK15387        357 LPTL---PSELYKLWAYNNRLT-SLPALP-------------------------------------------------SG  383 (788)
T ss_pred             CCCC---Ccccceehhhccccc-cCcccc-------------------------------------------------cc
Confidence            4432   245677778888776 345321                                                 12


Q ss_pred             eeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccC
Q 042359          794 VRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSN  873 (979)
Q Consensus       794 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~  873 (979)
                      |+.|||++|+|+ .+|...   ++|+.|++++|+++ .+|...   .+|+.|++++|+|+ .+|..+.++++|+.|+|++
T Consensus       384 L~~LdLs~N~Lt-~LP~l~---s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~  454 (788)
T PRK15387        384 LKELIVSGNRLT-SLPVLP---SELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG  454 (788)
T ss_pred             cceEEecCCccc-CCCCcc---cCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCC
Confidence            477888888888 466543   57888999999988 477643   46778899999988 7888888889999999999


Q ss_pred             CcccccCCC
Q 042359          874 NNLTGKIPS  882 (979)
Q Consensus       874 N~l~g~ip~  882 (979)
                      |+|+|.+|.
T Consensus       455 N~Ls~~~~~  463 (788)
T PRK15387        455 NPLSERTLQ  463 (788)
T ss_pred             CCCCchHHH
Confidence            999988765

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=2.4e-21  Score=226.03  Aligned_cols=266  Identities=24%  Similarity=0.349  Sum_probs=194.1

Q ss_pred             ccEEEccCCCCCCCCchHHHhcCCCccEEEcccCcCCCCCCCcccccCCcEEEeecccCCCCCCccCCCCcEEEcccccc
Q 042359          506 LQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLF  585 (979)
Q Consensus       506 L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l  585 (979)
                      -..|+++++.++.+ |..+.   ++|+.|++++|+++. +|.  ..++|+.|++++|+++. +|..+++|+.|++++|.+
T Consensus       203 ~~~LdLs~~~LtsL-P~~l~---~~L~~L~L~~N~Lt~-LP~--lp~~Lk~LdLs~N~Lts-LP~lp~sL~~L~Ls~N~L  274 (788)
T PRK15387        203 NAVLNVGESGLTTL-PDCLP---AHITTLVIPDNNLTS-LPA--LPPELRTLEVSGNQLTS-LPVLPPGLLELSIFSNPL  274 (788)
T ss_pred             CcEEEcCCCCCCcC-Ccchh---cCCCEEEccCCcCCC-CCC--CCCCCcEEEecCCccCc-ccCcccccceeeccCCch
Confidence            45566777766643 33332   357777777777765 332  24567777777777774 355567888888888887


Q ss_pred             cccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccc
Q 042359          586 SGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNI  665 (979)
Q Consensus       586 ~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~  665 (979)
                      .. +|..       .++|+.|++++|+++ .+|..   .++|+.|++++|++++ +|..   ..+|+.|++++|++++ +
T Consensus       275 ~~-Lp~l-------p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-L  337 (788)
T PRK15387        275 TH-LPAL-------PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-L  337 (788)
T ss_pred             hh-hhhc-------hhhcCEEECcCCccc-ccccc---ccccceeECCCCcccc-CCCC---cccccccccccCcccc-c
Confidence            64 3321       356888889999887 45542   4679999999999884 5542   2468888999999874 5


Q ss_pred             cccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhc
Q 042359          666 LVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNL  745 (979)
Q Consensus       666 p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l  745 (979)
                      |..   ..+|++|++++|+++ .+|..    .++|+.|++++|++++ +|..   ..+|+.|++++|++++ +|...   
T Consensus       338 P~l---p~~Lq~LdLS~N~Ls-~LP~l----p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l~---  401 (788)
T PRK15387        338 PTL---PSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVLP---  401 (788)
T ss_pred             ccc---ccccceEecCCCccC-CCCCC----Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCcc---
Confidence            532   257899999999998 57752    4578889999999984 6653   3578999999999873 55422   


Q ss_pred             ccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCC
Q 042359          746 TGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSY  825 (979)
Q Consensus       746 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~  825 (979)
                                                                    ..|+.||+++|+++ .+|...   .+|+.|++++
T Consensus       402 ----------------------------------------------s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~  431 (788)
T PRK15387        402 ----------------------------------------------SELKELMVSGNRLT-SLPMLP---SGLLSLSVYR  431 (788)
T ss_pred             ----------------------------------------------cCCCEEEccCCcCC-CCCcch---hhhhhhhhcc
Confidence                                                          12478999999998 477643   4688899999


Q ss_pred             CcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCC
Q 042359          826 NSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSL  863 (979)
Q Consensus       826 N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l  863 (979)
                      |+|+ .+|..++++++|+.|+|++|+|+|.+|..+..+
T Consensus       432 NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l  468 (788)
T PRK15387        432 NQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI  468 (788)
T ss_pred             Cccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence            9999 899999999999999999999999988877443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.81  E-value=8.6e-20  Score=214.84  Aligned_cols=228  Identities=25%  Similarity=0.401  Sum_probs=158.0

Q ss_pred             CCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCc
Q 042359          572 SSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSL  651 (979)
Q Consensus       572 ~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  651 (979)
                      +.+++.|++++|+++. +|..+      .++|+.|++++|+++ .+|..+.  .+|+.|++++|++. .+|..+.  ++|
T Consensus       198 p~~L~~L~Ls~N~Lts-LP~~l------~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L  264 (754)
T PRK15370        198 PEQITTLILDNNELKS-LPENL------QGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SAL  264 (754)
T ss_pred             ccCCcEEEecCCCCCc-CChhh------ccCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCC
Confidence            4566667777776663 33322      246777777777776 4555443  36778888888777 5666553  478


Q ss_pred             cEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccC
Q 042359          652 VWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIAD  731 (979)
Q Consensus       652 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  731 (979)
                      +.|++++|+++ .+|..+.  ++|+.|++++|+++ .+|..+.   ++|+.|++++|+++. +|..+.  ++|+.|++++
T Consensus       265 ~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp---~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~  334 (754)
T PRK15370        265 QSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP---SGITHLNVQSNSLTA-LPETLP--PGLKTLEAGE  334 (754)
T ss_pred             CEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch---hhHHHHHhcCCcccc-CCcccc--ccceeccccC
Confidence            88888888877 4565543  47888888888887 4665443   467888888888874 555443  5788888888


Q ss_pred             CccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCccccccccc
Q 042359          732 NNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLE  811 (979)
Q Consensus       732 n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~  811 (979)
                      |.+++ +|..+.                                                +.|+.|+|++|+|+ .+|..
T Consensus       335 N~Lt~-LP~~l~------------------------------------------------~sL~~L~Ls~N~L~-~LP~~  364 (754)
T PRK15370        335 NALTS-LPASLP------------------------------------------------PELQVLDVSKNQIT-VLPET  364 (754)
T ss_pred             Ccccc-CChhhc------------------------------------------------CcccEEECCCCCCC-cCChh
Confidence            88874 554321                                                23478888888887 57766


Q ss_pred             ccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCC----CCCCCCCEEEccCCcccc
Q 042359          812 VTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESM----SSLTFLNHLNLSNNNLTG  878 (979)
Q Consensus       812 l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l----~~l~~L~~L~ls~N~l~g  878 (979)
                      +.  ++|+.|+|++|+++ .+|..+.  .+|+.||+++|+|+ .+|..+    ..++.+..++|.+|+++.
T Consensus       365 lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~  429 (754)
T PRK15370        365 LP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE  429 (754)
T ss_pred             hc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH
Confidence            53  67889999999988 6777665  46888899999988 555544    345778889999998873

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.79  E-value=1.4e-19  Score=213.17  Aligned_cols=265  Identities=24%  Similarity=0.371  Sum_probs=154.1

Q ss_pred             CccEEEccCCCCCCCCchHHHhcCCCccEEEcccCcCCCCCCCcccccCCcEEEeecccCCCCCCccCCCCcEEEccccc
Q 042359          505 HLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNL  584 (979)
Q Consensus       505 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~  584 (979)
                      +...|++++++++.. |..+   .+.++.|++++|+++...                       ...+.+|+.|++++|.
T Consensus       179 ~~~~L~L~~~~LtsL-P~~I---p~~L~~L~Ls~N~LtsLP-----------------------~~l~~nL~~L~Ls~N~  231 (754)
T PRK15370        179 NKTELRLKILGLTTI-PACI---PEQITTLILDNNELKSLP-----------------------ENLQGNIKTLYANSNQ  231 (754)
T ss_pred             CceEEEeCCCCcCcC-Cccc---ccCCcEEEecCCCCCcCC-----------------------hhhccCCCEEECCCCc
Confidence            345666666665543 2221   234556666666555322                       2223455566666655


Q ss_pred             ccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCcccccc
Q 042359          585 FSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGN  664 (979)
Q Consensus       585 l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  664 (979)
                      ++. +|..+      ..+|+.|++++|.+. .+|..+.  ++|+.|++++|+++ .+|..+.  ++|+.|++++|++++ 
T Consensus       232 Lts-LP~~l------~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-  297 (754)
T PRK15370        232 LTS-IPATL------PDTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-  297 (754)
T ss_pred             ccc-CChhh------hccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-
Confidence            552 33322      135666666666665 4454443  35667777777666 4555443  467777777777663 


Q ss_pred             ccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhh
Q 042359          665 ILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINN  744 (979)
Q Consensus       665 ~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~  744 (979)
                      +|..+.  ++|+.|++++|+++ .+|..+   .++|+.|++++|.+++ +|..+.  ++|+.|++++|+++ .+|..+. 
T Consensus       298 LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp-  366 (754)
T PRK15370        298 LPAHLP--SGITHLNVQSNSLT-ALPETL---PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP-  366 (754)
T ss_pred             Ccccch--hhHHHHHhcCCccc-cCCccc---cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc-
Confidence            444332  35677777777776 455543   2567777777777764 565553  57778888887776 3554321 


Q ss_pred             cccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCC
Q 042359          745 LTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFS  824 (979)
Q Consensus       745 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls  824 (979)
                                                                     +.|+.|+|++|+++ .+|..+.  ..|+.|+++
T Consensus       367 -----------------------------------------------~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs  396 (754)
T PRK15370        367 -----------------------------------------------PTITTLDVSRNALT-NLPENLP--AALQIMQAS  396 (754)
T ss_pred             -----------------------------------------------CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhc
Confidence                                                           12367788888877 5666554  357778888


Q ss_pred             CCcceeccCCCCC----ccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCccccc
Q 042359          825 YNSFTGRIPESIG----VMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGK  879 (979)
Q Consensus       825 ~N~l~~~ip~~~~----~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~  879 (979)
                      +|+++ .+|..+.    .++.+..|++.+|.++.      ..+..|+.+ ++.+.+.|+
T Consensus       397 ~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~------~tl~~L~~L-l~s~~~~gp  447 (754)
T PRK15370        397 RNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE------RTIQNMQRL-MSSVGYQGP  447 (754)
T ss_pred             cCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH------HHHHHHHHh-hhcccccCC
Confidence            88887 5555443    34677888888888773      233334444 445555554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.70  E-value=9.8e-19  Score=192.72  Aligned_cols=162  Identities=27%  Similarity=0.255  Sum_probs=72.3

Q ss_pred             CCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccc------cCCccccCCCCCCEEEccCCcccccCCcccCC
Q 042359          574 NLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNG------ELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGS  647 (979)
Q Consensus       574 ~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~------~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~  647 (979)
                      +|++++++++.++......++..+...+.++.++++++.+.+      .++..+..+++|+.|++++|.+.+..+..+..
T Consensus        24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  103 (319)
T cd00116          24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES  103 (319)
T ss_pred             hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence            355555555554432222233333344555555555555441      12223444555555555555554333333333


Q ss_pred             CCC---ccEEEcCCccccc----cccccccCC-CCCCEEeccCCcccccCChhHHH---hhhccceeeccCCcccCC---
Q 042359          648 LTS---LVWLHLGENRLSG----NILVSLKNC-TALESLDVGENEFVGNIPTWIGE---RFSRMVVLILRSNKFHGP---  713 (979)
Q Consensus       648 l~~---L~~L~L~~n~l~~----~~p~~l~~l-~~L~~L~L~~N~l~~~ip~~~~~---~l~~L~~L~L~~n~l~~~---  713 (979)
                      +..   |++|++++|++++    .+...+..+ ++|+.|++++|.+++..+..+..   .+++|+.|++++|.+++.   
T Consensus       104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  183 (319)
T cd00116         104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR  183 (319)
T ss_pred             HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHH
Confidence            332   5555555555542    122233344 55555555555555322111111   233455555555555421   


Q ss_pred             -CCccccCCCCccEEEccCCccc
Q 042359          714 -LPTGLCDLAFLQILDIADNNLS  735 (979)
Q Consensus       714 -~p~~l~~l~~L~~L~Ls~n~l~  735 (979)
                       ++..+..+++|+.|++++|.+.
T Consensus       184 ~l~~~l~~~~~L~~L~L~~n~i~  206 (319)
T cd00116         184 ALAEGLKANCNLEVLDLNNNGLT  206 (319)
T ss_pred             HHHHHHHhCCCCCEEeccCCccC
Confidence             2222333445555555555544

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.66  E-value=4.3e-17  Score=179.61  Aligned_cols=161  Identities=24%  Similarity=0.179  Sum_probs=78.9

Q ss_pred             EEEcCCCCCC-CCCccccCCCCCCceEecCCCccccCCc---cccccCCCCCCEEEccCccCCCC----chhhhhcCCCC
Q 042359          152 YLNLSRTRIG-GMIPHHLGNLSNLQFLDLSSNYLLYVDN---FWWLSGLSFLEHLDLRSVNLSKA----FDWLMVTNKLP  223 (979)
Q Consensus       152 ~L~Ls~n~i~-~~~p~~~~~L~~L~~L~Ls~n~i~~~~~---~~~l~~l~~L~~L~l~~n~~~~~----~~~~~~~~~l~  223 (979)
                      .|+|+.+.++ ...+..+..+.+|+.|+++++.+.....   ...+...++|++++++++.+...    ......+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            4667777776 3344556667778888888777643221   11244555666666666655421    11223344455


Q ss_pred             CccEEEccCCCCCCCChhhhcCCCC---CCEEECCCCCCCCCCCCCcccccCCccccCC-CCCCEEeccCCcCccc----
Q 042359          224 SLVELRLANCQLHHFSLLATANFSS---LTVLDLSDNQFDKWFIPSWVFGPIPRGLQNL-TSLRHLGLDSNHFNSS----  295 (979)
Q Consensus       224 ~L~~L~L~~n~l~~~~~~~l~~l~~---L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l-~~L~~L~L~~n~l~~~----  295 (979)
                      +|++|++++|.+....+..+..+.+   |++|++++|+++....     ..+...+..+ ++|+.|++++|.+++.    
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~-----~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  156 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGL-----RLLAKGLKDLPPALEKLVLGRNRLEGASCEA  156 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHH-----HHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence            6666666666555444433333333   5555555555542000     1112233333 4555555555555421    


Q ss_pred             CchhhccCCCCCEEeccCCcCc
Q 042359          296 IPNWLYRFIHLEYLSLSNNSLQ  317 (979)
Q Consensus       296 ~p~~l~~l~~L~~L~L~~n~l~  317 (979)
                      ++..+..+++|++|++++|.++
T Consensus       157 ~~~~~~~~~~L~~L~l~~n~l~  178 (319)
T cd00116         157 LAKALRANRDLKELNLANNGIG  178 (319)
T ss_pred             HHHHHHhCCCcCEEECcCCCCc
Confidence            1222333444555555555444

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.66  E-value=7.9e-18  Score=152.15  Aligned_cols=143  Identities=34%  Similarity=0.478  Sum_probs=126.8

Q ss_pred             CCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEe
Q 042359          600 TKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLD  679 (979)
Q Consensus       600 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  679 (979)
                      ++.++.|.+++|+++ .+|..+..+.+|+.|++++|++. .+|.++..++.|+.|+++-|++. ..|..|+.++.|++||
T Consensus        32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld  108 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD  108 (264)
T ss_pred             hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence            566777888888887 67778888999999999999998 78889999999999999999987 7899999999999999


Q ss_pred             ccCCcccc-cCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccC
Q 042359          680 VGENEFVG-NIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGM  748 (979)
Q Consensus       680 L~~N~l~~-~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l  748 (979)
                      +.+|++.. .+|..++ .+..|+.|.+++|.|. .+|..++.+++|+.|.+.+|.+. .+|.+++.++.|
T Consensus       109 ltynnl~e~~lpgnff-~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~l  175 (264)
T KOG0617|consen  109 LTYNNLNENSLPGNFF-YMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRL  175 (264)
T ss_pred             ccccccccccCCcchh-HHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHH
Confidence            99999863 5788888 7999999999999998 89999999999999999999987 789999888776

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.65  E-value=2.5e-18  Score=155.36  Aligned_cols=181  Identities=24%  Similarity=0.469  Sum_probs=121.6

Q ss_pred             CCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEE
Q 042359          648 LTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQIL  727 (979)
Q Consensus       648 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  727 (979)
                      +...+.|.+++|+++ .+|..+..+.+|+.|++++|++. .+|..+. .+++|+.|+++-|++. .+|..|+.++.|+.|
T Consensus        32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~is-sl~klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSIS-SLPKLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhh-hchhhhheecchhhhh-cCccccCCCchhhhh
Confidence            334444444555444 34444555555555555555554 4555555 4666666666666665 677778888888888


Q ss_pred             EccCCcccc-ccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccc
Q 042359          728 DIADNNLSG-AIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSG  806 (979)
Q Consensus       728 ~Ls~n~l~~-~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~  806 (979)
                      |+++|++.. .+|..|..++.                                              |+.|+|+.|.|. 
T Consensus       108 dltynnl~e~~lpgnff~m~t----------------------------------------------lralyl~dndfe-  140 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTT----------------------------------------------LRALYLGDNDFE-  140 (264)
T ss_pred             hccccccccccCCcchhHHHH----------------------------------------------HHHHHhcCCCcc-
Confidence            888887763 23444433333                                              366788888888 


Q ss_pred             cccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCC---CCCEEEccCCcccccCC
Q 042359          807 KIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLT---FLNHLNLSNNNLTGKIP  881 (979)
Q Consensus       807 ~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~---~L~~L~ls~N~l~g~ip  881 (979)
                      .+|.+++++++|+.|.+..|.+- ++|..++.++.|+.|.+.+|+++ .+|..++++.   +=+++.+.+|++..+|.
T Consensus       141 ~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIa  216 (264)
T KOG0617|consen  141 ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPIA  216 (264)
T ss_pred             cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChHH
Confidence            78888889999999999888888 78888898999999999999988 6777777653   22345566777765554

>PLN03150 hypothetical protein; Provisional

Probab=99.59  E-value=4.1e-15  Score=175.48  Aligned_cols=116  Identities=39%  Similarity=0.675  Sum_probs=103.6

Q ss_pred             eeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccC
Q 042359          794 VRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSN  873 (979)
Q Consensus       794 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~  873 (979)
                      ++.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|+.++++++|++|||++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCCCc--cCCCccccccCCC-CCCCCCCCCCCC
Q 042359          874 NNLTGKIPSST--QLQSFDVSSFAGN-DLCGAPLPKNCT  909 (979)
Q Consensus       874 N~l~g~ip~~~--~~~~~~~~~~~~n-~lcg~~~~~~c~  909 (979)
                      |+++|.+|..-  .+......++.+| .+||.|....|.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            99999999742  1223344568899 899977555674

>PLN03150 hypothetical protein; Provisional

Probab=99.42  E-value=7.4e-13  Score=156.40  Aligned_cols=128  Identities=34%  Similarity=0.541  Sum_probs=111.0

Q ss_pred             CCCHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCc----cccceeccC--CC--CcEEEEECCCCCCCCchhhHHHhhccc
Q 042359           39 GCLGSEKEALLSFKRDLKDPSNRLASWSGNGDCC----AWAGVFCDN--IT--GHVLHLDLRNPFNYHKESEYEAIRRTA  110 (979)
Q Consensus        39 ~c~~~~~~~ll~~k~~~~~~~~~l~~W~~~~~~c----~w~gv~c~~--~~--~~v~~L~L~~~~~~~~~~~~~~~~~~~  110 (979)
                      .+.++|.+||+++|+++.++..  .+|. +..||    .|.||.|+.  ..  .+|+.|+|++               +.
T Consensus       368 ~t~~~~~~aL~~~k~~~~~~~~--~~W~-g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~---------------n~  429 (623)
T PLN03150        368 KTLLEEVSALQTLKSSLGLPLR--FGWN-GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDN---------------QG  429 (623)
T ss_pred             ccCchHHHHHHHHHHhcCCccc--CCCC-CCCCCCcccccccceeeccCCCCceEEEEEECCC---------------CC
Confidence            4667899999999999976532  4896 44453    799999952  22  2599999998               48


Q ss_pred             ccccccccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccc
Q 042359          111 LVGKINPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLL  185 (979)
Q Consensus       111 l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~  185 (979)
                      +.|.+|+.++++++|++|+|++|.+.+. +|..++.+++|++|+|++|++++.+|..++++++|++|+|++|.+.
T Consensus       430 L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~  503 (623)
T PLN03150        430 LRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS  503 (623)
T ss_pred             ccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCccc
Confidence            8999999999999999999999999986 8999999999999999999999999999999999999999999865

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.27  E-value=1.2e-13  Score=148.23  Aligned_cols=195  Identities=26%  Similarity=0.407  Sum_probs=137.3

Q ss_pred             CCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEe
Q 042359          600 TKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLD  679 (979)
Q Consensus       600 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  679 (979)
                      +..-...|++.|++. .+|..++.+..|+.+.+..|.+. .+|..+.++..|++++|+.|+++ .+|..++.|+ |+.|-
T Consensus        74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli  149 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI  149 (722)
T ss_pred             ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence            344556777778777 67777777777777888888777 67777777778888888888777 5666677666 77777


Q ss_pred             ccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCccccccccccc
Q 042359          680 VGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQ  759 (979)
Q Consensus       680 L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~  759 (979)
                      +++|+++ .+|..++ ....|..|+.+.|.+. .+|..++++.+|+.|.+..|++. .+|+++..|+             
T Consensus       150 ~sNNkl~-~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-------------  212 (722)
T KOG0532|consen  150 VSNNKLT-SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-------------  212 (722)
T ss_pred             EecCccc-cCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-------------
Confidence            7777776 6777776 6777777777777776 56777777777777777777775 4555444222             


Q ss_pred             ccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCC---
Q 042359          760 QYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESI---  836 (979)
Q Consensus       760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~---  836 (979)
                                                        |..||+|+|+++ .||.+|.+|+.|++|-|.+|.+. ..|..+   
T Consensus       213 ----------------------------------Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~k  256 (722)
T KOG0532|consen  213 ----------------------------------LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEK  256 (722)
T ss_pred             ----------------------------------eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhc
Confidence                                              356778888877 77777777788888888777777 555544   


Q ss_pred             CccCCCCEEECcCCc
Q 042359          837 GVMRSLESIDFSANQ  851 (979)
Q Consensus       837 ~~l~~L~~LdLs~N~  851 (979)
                      |...--++|+..-++
T Consensus       257 GkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  257 GKVHIFKYLSTQACQ  271 (722)
T ss_pred             cceeeeeeecchhcc
Confidence            333444566666664

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.25  E-value=2.6e-13  Score=145.64  Aligned_cols=195  Identities=27%  Similarity=0.424  Sum_probs=155.6

Q ss_pred             CCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhcccee
Q 042359          624 YQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVL  703 (979)
Q Consensus       624 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L  703 (979)
                      +.--...|++.|++. .+|..+..+..|+.+.++.|.+. .+|..+.++..|.+|||+.|+++ .+|..+.  .--|+.|
T Consensus        74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC--~lpLkvl  148 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC--DLPLKVL  148 (722)
T ss_pred             ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh--cCcceeE
Confidence            444567889999998 78888888889999999999987 68888999999999999999998 7888776  3458888


Q ss_pred             eccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCc
Q 042359          704 ILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGE  783 (979)
Q Consensus       704 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  783 (979)
                      .+++|+++ .+|..++.+..|..||.+.|.+. .+|..++.++++                                   
T Consensus       149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~sl-----------------------------------  191 (722)
T KOG0532|consen  149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSL-----------------------------------  191 (722)
T ss_pred             EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHH-----------------------------------
Confidence            88988887 78888888888888999988886 677777766665                                   


Q ss_pred             cchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCC---
Q 042359          784 MVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESM---  860 (979)
Q Consensus       784 ~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l---  860 (979)
                                 +.|.++.|++. .+|+++..|+ |..||+|.|+++ .||-.|.+|+.|++|-|.+|.|. ..|..+   
T Consensus       192 -----------r~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~k  256 (722)
T KOG0532|consen  192 -----------RDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEK  256 (722)
T ss_pred             -----------HHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhc
Confidence                       56777788887 6777777554 788888888888 88888888888888888888887 556554   


Q ss_pred             CCCCCCCEEEccCCc
Q 042359          861 SSLTFLNHLNLSNNN  875 (979)
Q Consensus       861 ~~l~~L~~L~ls~N~  875 (979)
                      +...--++|+..-++
T Consensus       257 GkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  257 GKVHIFKYLSTQACQ  271 (722)
T ss_pred             cceeeeeeecchhcc
Confidence            334556677776664

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.22  E-value=1.2e-11  Score=140.13  Aligned_cols=123  Identities=31%  Similarity=0.491  Sum_probs=73.0

Q ss_pred             EEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCC-CccEEEcCCccccccccccccCCCCCCEEeccCC
Q 042359          605 ALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLT-SLVWLHLGENRLSGNILVSLKNCTALESLDVGEN  683 (979)
Q Consensus       605 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N  683 (979)
                      .++++.|.+...+. .+..++.++.|++.+|.++ .+|......+ +|+.|++++|++. .+|..+..+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccCch-hhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            56666666542222 3344466777777777777 5555555553 7777777777776 34455667777777777777


Q ss_pred             cccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCc
Q 042359          684 EFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNN  733 (979)
Q Consensus       684 ~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  733 (979)
                      +++ .+|.... ..+.|+.|++++|++. .+|..+.....|+++.+++|+
T Consensus       174 ~l~-~l~~~~~-~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~  220 (394)
T COG4886         174 DLS-DLPKLLS-NLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNS  220 (394)
T ss_pred             hhh-hhhhhhh-hhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCc
Confidence            776 4555443 3556666666666665 444444344445555555553

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.20  E-value=1.9e-11  Score=138.55  Aligned_cols=83  Identities=40%  Similarity=0.637  Sum_probs=38.7

Q ss_pred             eEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCC
Q 042359          795 RMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNN  874 (979)
Q Consensus       795 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N  874 (979)
                      +.+++++|.+. .++..+.++.++..|.+++|++. .+|..++.+.+++.|++++|+++ .++. ++.+.+++.||+++|
T Consensus       212 ~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n  287 (394)
T COG4886         212 EELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGN  287 (394)
T ss_pred             hhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccc-cccc-ccccCccCEEeccCc
Confidence            34444444333 33444444445555555555544 23444445555555555555554 2222 444555555555555


Q ss_pred             cccccCC
Q 042359          875 NLTGKIP  881 (979)
Q Consensus       875 ~l~g~ip  881 (979)
                      .++..+|
T Consensus       288 ~~~~~~~  294 (394)
T COG4886         288 SLSNALP  294 (394)
T ss_pred             cccccch
Confidence            5544433

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.17  E-value=5.5e-12  Score=131.73  Aligned_cols=189  Identities=29%  Similarity=0.288  Sum_probs=123.8

Q ss_pred             cCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCC--CccccCCCCCCceEecCCCccccCCccccccCCC
Q 042359          120 LDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGM--IPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLS  197 (979)
Q Consensus       120 ~~l~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~--~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~  197 (979)
                      ++++.||...|.++.+...........|++++.||||.|-+...  +-.....|++|+.|+++.|++........-..++
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            57788888888888776532224567788999999999877643  2234567888999999988865543322233567


Q ss_pred             CCCEEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCcccc
Q 042359          198 FLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQ  277 (979)
Q Consensus       198 ~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~  277 (979)
                      .|+.|.+++|.++ ..++...+..+|+|+.|+|..|..-.+......-+..|+.|||++|++-++        ..-...+
T Consensus       198 ~lK~L~l~~CGls-~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~--------~~~~~~~  268 (505)
T KOG3207|consen  198 HLKQLVLNSCGLS-WKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDF--------DQGYKVG  268 (505)
T ss_pred             hhheEEeccCCCC-HHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccc--------ccccccc
Confidence            7888888888887 445566667778888888888764444444555667777888888777642        1113356


Q ss_pred             CCCCCCEEeccCCcCcccC-chh-----hccCCCCCEEeccCCcCc
Q 042359          278 NLTSLRHLGLDSNHFNSSI-PNW-----LYRFIHLEYLSLSNNSLQ  317 (979)
Q Consensus       278 ~l~~L~~L~L~~n~l~~~~-p~~-----l~~l~~L~~L~L~~n~l~  317 (979)
                      .++.|+.|+++.+.+...- |+.     ...+++|++|++..|++.
T Consensus       269 ~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  269 TLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR  314 (505)
T ss_pred             cccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence            6777777777777665422 221     134456666666666554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=2.4e-11  Score=127.01  Aligned_cols=162  Identities=25%  Similarity=0.216  Sum_probs=98.9

Q ss_pred             CCCCCceEecCCCccccCCccccccCCCCCCEEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChh-hhcCCCC
Q 042359          170 NLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLL-ATANFSS  248 (979)
Q Consensus       170 ~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~  248 (979)
                      ++.+|+...|.++.+...+.......+++++.|||+.|-+............+|+|+.|+++.|++...... .-..+++
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            455566666665555444433445666777777777777777666677777888888888888876655432 2235677


Q ss_pred             CCEEECCCCCCCCCCCCCcccccCCccccCCCCCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCccccccc
Q 042359          249 LTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNL  328 (979)
Q Consensus       249 L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l  328 (979)
                      |++|.++.|.++.        ..+-..+..+|+|+.|++..|.....-......+..|+.|+|++|.+...-.....+.+
T Consensus       199 lK~L~l~~CGls~--------k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l  270 (505)
T KOG3207|consen  199 LKQLVLNSCGLSW--------KDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTL  270 (505)
T ss_pred             hheEEeccCCCCH--------HHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccc
Confidence            7777777777763        33334445667777777777742222222233456677777777766532212345566


Q ss_pred             CccCEEecCCC
Q 042359          329 TSISWLDLSLN  339 (979)
Q Consensus       329 ~~L~~L~L~~n  339 (979)
                      +.|+.|+++.+
T Consensus       271 ~~L~~Lnls~t  281 (505)
T KOG3207|consen  271 PGLNQLNLSST  281 (505)
T ss_pred             cchhhhhcccc
Confidence            66666666666

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.01  E-value=2e-10  Score=110.52  Aligned_cols=86  Identities=28%  Similarity=0.332  Sum_probs=19.8

Q ss_pred             CCCCCCEEeCCCCCCCCCCcccccc-CCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccccCCCCC
Q 042359          121 DLKHLSYLDLSFNDFQGIQIPRFFG-SMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFL  199 (979)
Q Consensus       121 ~l~~L~~L~Ls~n~i~~~~lp~~~~-~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L  199 (979)
                      +..++++|+|++|.|+.++   .++ .+.+|+.|||++|.|+.. + .+..+++|++|++++|+|.+++.. ....+++|
T Consensus        17 n~~~~~~L~L~~n~I~~Ie---~L~~~l~~L~~L~Ls~N~I~~l-~-~l~~L~~L~~L~L~~N~I~~i~~~-l~~~lp~L   90 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTIE---NLGATLDKLEVLDLSNNQITKL-E-GLPGLPRLKTLDLSNNRISSISEG-LDKNLPNL   90 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHH-HHHH-TT-
T ss_pred             ccccccccccccccccccc---chhhhhcCCCEEECCCCCCccc-c-CccChhhhhhcccCCCCCCccccc-hHHhCCcC
Confidence            3445677777777766532   344 466677777777776632 2 355666666666666666655421 11234555


Q ss_pred             CEEEccCccCCCC
Q 042359          200 EHLDLRSVNLSKA  212 (979)
Q Consensus       200 ~~L~l~~n~~~~~  212 (979)
                      ++|++++|++.+.
T Consensus        91 ~~L~L~~N~I~~l  103 (175)
T PF14580_consen   91 QELYLSNNKISDL  103 (175)
T ss_dssp             -EEE-TTS---SC
T ss_pred             CEEECcCCcCCCh
Confidence            5555555555443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.99  E-value=4.6e-10  Score=108.08  Aligned_cols=111  Identities=33%  Similarity=0.466  Sum_probs=29.6

Q ss_pred             ccCCCCCCEEEcCCCCCCCCCccccC-CCCCCceEecCCCccccCCccccccCCCCCCEEEccCccCCCCchhhhhcCCC
Q 042359          144 FGSMGNLRYLNLSRTRIGGMIPHHLG-NLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKL  222 (979)
Q Consensus       144 ~~~l~~L~~L~Ls~n~i~~~~p~~~~-~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~l  222 (979)
                      +.+..++++|+|++|.|+. + +.++ .+.+|+.|++++|.|..++.   +.                          .+
T Consensus        15 ~~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l~~---l~--------------------------~L   63 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKLEG---LP--------------------------GL   63 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S--TT---------------------------------
T ss_pred             ccccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccccC---cc--------------------------Ch
Confidence            3445567788888887763 2 2344 46777777777777766654   23                          34


Q ss_pred             CCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCccccCCCCCCEEeccCCcCc
Q 042359          223 PSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFN  293 (979)
Q Consensus       223 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~  293 (979)
                      ++|++|++++|+++.+.......+++|++|++++|++.++       +.+ ..+..+++|++|++.+|.++
T Consensus        64 ~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l-------~~l-~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   64 PRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDL-------NEL-EPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SC-------CCC-GGGGG-TT--EEE-TT-GGG
T ss_pred             hhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCCh-------HHh-HHHHcCCCcceeeccCCccc
Confidence            4445555555555544332223456666666666666542       111 33455566666666666554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.96  E-value=1.1e-10  Score=118.94  Aligned_cols=254  Identities=25%  Similarity=0.261  Sum_probs=121.6

Q ss_pred             cccccCCCCCCEEeCCCCCCCCC---CccccccCCCCCCEEEcCCCC---CCCCCccc-------cCCCCCCceEecCCC
Q 042359          116 NPSLLDLKHLSYLDLSFNDFQGI---QIPRFFGSMGNLRYLNLSRTR---IGGMIPHH-------LGNLSNLQFLDLSSN  182 (979)
Q Consensus       116 ~~~l~~l~~L~~L~Ls~n~i~~~---~lp~~~~~l~~L~~L~Ls~n~---i~~~~p~~-------~~~L~~L~~L~Ls~n  182 (979)
                      -+.+-....+++++|++|.|..-   .+...+.+.++|+..++|+--   ....+|..       +...++|++||||.|
T Consensus        23 ~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN  102 (382)
T KOG1909|consen   23 EEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN  102 (382)
T ss_pred             HHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence            34556678888999999987542   133456677788888887642   22234432       334456666666666


Q ss_pred             ccccCCccccccCCCCCCEEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhh-------------hcCCCCC
Q 042359          183 YLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLA-------------TANFSSL  249 (979)
Q Consensus       183 ~i~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-------------l~~l~~L  249 (979)
                      .+..-..                       ..+-..+..+..|++|.|.+|.+.......             .+.-+.|
T Consensus       103 A~G~~g~-----------------------~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~L  159 (382)
T KOG1909|consen  103 AFGPKGI-----------------------RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKL  159 (382)
T ss_pred             ccCccch-----------------------HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcce
Confidence            5432211                       112223344555555555555544332222             2233556


Q ss_pred             CEEECCCCCCCCCCCCCcccccCCccccCCCCCCEEeccCCcCccc----CchhhccCCCCCEEeccCCcCccccCcccc
Q 042359          250 TVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSS----IPNWLYRFIHLEYLSLSNNSLQGTIDSEAL  325 (979)
Q Consensus       250 ~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l  325 (979)
                      +++..+.|++.+...     ..+...+...+.|+.+.+..|.+...    +...+..+++|++|||..|.++..- .   
T Consensus       160 rv~i~~rNrlen~ga-----~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~eg-s---  230 (382)
T KOG1909|consen  160 RVFICGRNRLENGGA-----TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEG-S---  230 (382)
T ss_pred             EEEEeeccccccccH-----HHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHH-H---
Confidence            666666665543110     11223344445555555555554221    1122344455555555555443110 0   


Q ss_pred             cccCccCEEecCCCCCCcccCcccccCCCCCCeeeccCccCCcccchhh-hhccccccCCCcEEECcCCcCccc----cc
Q 042359          326 GNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEIL-DIFSGCVSNGLESLDLRSDSIYGH----LT  400 (979)
Q Consensus       326 ~~l~~L~~L~L~~n~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~~~~~~~~~~L~~L~L~~n~l~~~----~~  400 (979)
                                        ..+...++.+++|+.|++++|.+.......+ +.+....+ .|+.|.+.+|.++..    +.
T Consensus       231 ------------------~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p-~L~vl~l~gNeIt~da~~~la  291 (382)
T KOG1909|consen  231 ------------------VALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAP-SLEVLELAGNEITRDAALALA  291 (382)
T ss_pred             ------------------HHHHHHhcccchheeecccccccccccHHHHHHHHhccCC-CCceeccCcchhHHHHHHHHH
Confidence                              0112223333444444444444433322211 11112222 266666666655421    22


Q ss_pred             cccCCCCCCcEEeccCCcCc
Q 042359          401 DQLGQFKNIVTLDFANNSIV  420 (979)
Q Consensus       401 ~~l~~l~~L~~L~Ls~n~l~  420 (979)
                      ......+.|+.|++++|.+.
T Consensus       292 ~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  292 ACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             HHHhcchhhHHhcCCccccc
Confidence            23445677888888888773

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.92  E-value=3e-10  Score=115.93  Aligned_cols=64  Identities=16%  Similarity=0.148  Sum_probs=32.1

Q ss_pred             CCCCcEEeccCCcCcccCc----ccccCCCCCCEEEcCCCcCccc---cChhhhcCCCCCcEEEccCCccc
Q 042359          406 FKNIVTLDFANNSIVGLIP----ESLGQLSTLRVLRINDNKLNGT---LSAIHFANLTKLSWFRVDGNKLT  469 (979)
Q Consensus       406 l~~L~~L~Ls~n~l~~~~p----~~l~~l~~L~~L~L~~n~l~~~---l~~~~~~~l~~L~~L~L~~n~l~  469 (979)
                      -+.|+.+....|++.....    ..|...+.|+.+.++.|.|...   +-...|..+++|+.||+.+|-++
T Consensus       156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft  226 (382)
T KOG1909|consen  156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT  226 (382)
T ss_pred             CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence            3556666666665543211    2344455666666666655311   11224555555555555555544

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.91  E-value=3.5e-10  Score=112.21  Aligned_cols=45  Identities=18%  Similarity=0.115  Sum_probs=27.0

Q ss_pred             ccccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCC
Q 042359          115 INPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIG  161 (979)
Q Consensus       115 ~~~~l~~l~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~  161 (979)
                      +|-.+.-+++|..+.++++.-..  +-+....-|.|+++...+..++
T Consensus       206 l~f~l~~f~~l~~~~~s~~~~~~--i~~~~~~kptl~t~~v~~s~~~  250 (490)
T KOG1259|consen  206 LSFNLNAFRNLKTLKFSALSTEN--IVDIELLKPTLQTICVHNTTIQ  250 (490)
T ss_pred             cccchHHhhhhheeeeeccchhh--eeceeecCchhheeeeeccccc
Confidence            34455667788888887775332  2222233467777777776654

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.82  E-value=4.9e-10  Score=111.19  Aligned_cols=106  Identities=33%  Similarity=0.406  Sum_probs=61.4

Q ss_pred             CCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccccCCCCCCEEEccCccCCCCchhhhhcCCCCCc
Q 042359          146 SMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSL  225 (979)
Q Consensus       146 ~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L  225 (979)
                      ....|+.||||+|.|+ .+..++.-+++++.|++|+|.|..++.   ++.+++|++||+++|.++....|-.   ++.++
T Consensus       282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n---La~L~~L~~LDLS~N~Ls~~~Gwh~---KLGNI  354 (490)
T KOG1259|consen  282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN---LAELPQLQLLDLSGNLLAECVGWHL---KLGNI  354 (490)
T ss_pred             hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehh---hhhcccceEeecccchhHhhhhhHh---hhcCE
Confidence            3455667777777766 455566666777777777777666655   5566666666666666665544432   34455


Q ss_pred             cEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCC
Q 042359          226 VELRLANCQLHHFSLLATANFSSLTVLDLSDNQFD  260 (979)
Q Consensus       226 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  260 (979)
                      +.|.|+.|.+....  .+.++.+|..||+++|++.
T Consensus       355 KtL~La~N~iE~LS--GL~KLYSLvnLDl~~N~Ie  387 (490)
T KOG1259|consen  355 KTLKLAQNKIETLS--GLRKLYSLVNLDLSSNQIE  387 (490)
T ss_pred             eeeehhhhhHhhhh--hhHhhhhheeccccccchh
Confidence            55555555444332  2344455555555555554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.79  E-value=5.8e-09  Score=82.44  Aligned_cols=60  Identities=42%  Similarity=0.591  Sum_probs=39.7

Q ss_pred             CCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCcc
Q 042359          817 ALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNL  876 (979)
Q Consensus       817 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l  876 (979)
                      +|+.|++++|+++...+..|..+++|++||+++|+++...|..|..+++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            466666666666654445666667777777777777666666666777777777776654

...

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.73  E-value=1.3e-08  Score=73.32  Aligned_cols=40  Identities=48%  Similarity=1.029  Sum_probs=31.2

Q ss_pred             CHHHHHHHHHhhhcCC-CCCCCCCCCCCC--CCCccccceecc
Q 042359           41 LGSEKEALLSFKRDLK-DPSNRLASWSGN--GDCCAWAGVFCD   80 (979)
Q Consensus        41 ~~~~~~~ll~~k~~~~-~~~~~l~~W~~~--~~~c~w~gv~c~   80 (979)
                      +++|++||++||+++. +|.+.+.+|+.+  .+||.|.||+|+
T Consensus         1 ~~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    1 PNQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             -HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred             CcHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence            3689999999999998 577899999965  799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.72  E-value=1.4e-09  Score=123.35  Aligned_cols=193  Identities=32%  Similarity=0.366  Sum_probs=115.4

Q ss_pred             CCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccccCCCCCC
Q 042359          121 DLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLE  200 (979)
Q Consensus       121 ~l~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~  200 (979)
                      .+..++.+++..|.+..  +-..++.+.+|.+|++.+|+|.. +...+..+++|++|++++|.|.++..   +..++.|+
T Consensus        70 ~l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~---l~~l~~L~  143 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLEG---LSTLTLLK  143 (414)
T ss_pred             HhHhHHhhccchhhhhh--hhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccccc---hhhccchh
Confidence            45666666677777764  23346677788888888888773 33336677888888888888777765   45555677


Q ss_pred             EEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCCh-hhhcCCCCCCEEECCCCCCCCCCCCCcccccCCccccCC
Q 042359          201 HLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSL-LATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNL  279 (979)
Q Consensus       201 ~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l  279 (979)
                      .|++++|.+.....    +..++.|+.+++++|++..+.. . ...+.+++.+++.+|.+..           ..++..+
T Consensus       144 ~L~l~~N~i~~~~~----~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~-----------i~~~~~~  207 (414)
T KOG0531|consen  144 ELNLSGNLISDISG----LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE-----------IEGLDLL  207 (414)
T ss_pred             hheeccCcchhccC----CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc-----------ccchHHH
Confidence            77777777776432    3336666666777766666655 3 4566666666666666652           2333334


Q ss_pred             CCCCEEeccCCcCcccCchhhccCC--CCCEEeccCCcCccccCcccccccCccCEEecCCC
Q 042359          280 TSLRHLGLDSNHFNSSIPNWLYRFI--HLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLN  339 (979)
Q Consensus       280 ~~L~~L~L~~n~l~~~~p~~l~~l~--~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n  339 (979)
                      ..+..+++..|.++..-+  +..+.  +|+.+++++|++. .+ +..+..+..+..+++..|
T Consensus       208 ~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~-~~~~~~~~~l~~l~~~~n  265 (414)
T KOG0531|consen  208 KKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RS-PEGLENLKNLPVLDLSSN  265 (414)
T ss_pred             HHHHHhhcccccceeccC--cccchhHHHHHHhcccCccc-cc-cccccccccccccchhhc
Confidence            444445666665543221  11222  2566666666654 22 144555555666666555

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.71  E-value=1.3e-08  Score=80.47  Aligned_cols=60  Identities=28%  Similarity=0.457  Sum_probs=55.9

Q ss_pred             ceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcc
Q 042359          793 LVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQL  852 (979)
Q Consensus       793 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l  852 (979)
                      .|+.|++++|+++...+..|.++++|++|++++|+++...|..|..+++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            578999999999976668899999999999999999988889999999999999999986

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.68  E-value=1.3e-08  Score=123.03  Aligned_cols=109  Identities=34%  Similarity=0.350  Sum_probs=61.9

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccccCCCC
Q 042359          119 LLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSF  198 (979)
Q Consensus       119 l~~l~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~  198 (979)
                      |..++.|++|||++|.--+ ++|..++.+-+||||+|+++.+. .+|..+++|.+|.+|++..+.-.... ......|++
T Consensus       567 f~~m~~LrVLDLs~~~~l~-~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~  643 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLS-KLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQS  643 (889)
T ss_pred             HhhCcceEEEECCCCCccC-cCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccc-cchhhhccc
Confidence            5556777777777654322 36777777777777777777776 56777777777777777665532222 112344666


Q ss_pred             CCEEEccCccCCCCchhhhhcCCCCCccEEEc
Q 042359          199 LEHLDLRSVNLSKAFDWLMVTNKLPSLVELRL  230 (979)
Q Consensus       199 L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L  230 (979)
                      ||+|.+..............+..+.+|+.+..
T Consensus       644 Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~  675 (889)
T KOG4658|consen  644 LRVLRLPRSALSNDKLLLKELENLEHLENLSI  675 (889)
T ss_pred             ccEEEeeccccccchhhHHhhhcccchhhhee
Confidence            66666655443332233333344444444444

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.66  E-value=1.9e-08  Score=121.56  Aligned_cols=84  Identities=31%  Similarity=0.348  Sum_probs=65.1

Q ss_pred             CCCCCEEeCCCCC--CCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccccCCCCC
Q 042359          122 LKHLSYLDLSFND--FQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFL  199 (979)
Q Consensus       122 l~~L~~L~Ls~n~--i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L  199 (979)
                      .+.|++|-+.+|.  +..+ -+++|..++.|++|||++|.--+.+|..++.|.+||+|+++++.+..+|..  +.++++|
T Consensus       544 ~~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~--l~~Lk~L  620 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSG--LGNLKKL  620 (889)
T ss_pred             CCccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchH--HHHHHhh
Confidence            3478899888886  5543 356688899999999999877778999999999999999999988776643  5556666


Q ss_pred             CEEEccCcc
Q 042359          200 EHLDLRSVN  208 (979)
Q Consensus       200 ~~L~l~~n~  208 (979)
                      .+|++..+.
T Consensus       621 ~~Lnl~~~~  629 (889)
T KOG4658|consen  621 IYLNLEVTG  629 (889)
T ss_pred             heecccccc
Confidence            666665544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.56  E-value=1.5e-08  Score=114.89  Aligned_cols=226  Identities=30%  Similarity=0.314  Sum_probs=161.0

Q ss_pred             cccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccccC
Q 042359          116 NPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSG  195 (979)
Q Consensus       116 ~~~l~~l~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~  195 (979)
                      -..+..+++|+.|++.+|.|..+  ...+..+++|++|++++|.|+...  .+..++.|+.|++++|.|..+..   +..
T Consensus        88 ~~~l~~~~~l~~l~l~~n~i~~i--~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~~~---~~~  160 (414)
T KOG0531|consen   88 LNHLSKLKSLEALDLYDNKIEKI--ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDISG---LES  160 (414)
T ss_pred             hcccccccceeeeeccccchhhc--ccchhhhhcchheecccccccccc--chhhccchhhheeccCcchhccC---Ccc
Confidence            34578899999999999999964  444788999999999999998653  47788889999999999998887   455


Q ss_pred             CCCCCEEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCcc
Q 042359          196 LSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRG  275 (979)
Q Consensus       196 l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~  275 (979)
                      ++.|+.+++++|.+...... . ...+.+++.+.+.+|.+..+..  +..+..+..+++..|.++.+           ..
T Consensus       161 l~~L~~l~l~~n~i~~ie~~-~-~~~~~~l~~l~l~~n~i~~i~~--~~~~~~l~~~~l~~n~i~~~-----------~~  225 (414)
T KOG0531|consen  161 LKSLKLLDLSYNRIVDIEND-E-LSELISLEELDLGGNSIREIEG--LDLLKKLVLLSLLDNKISKL-----------EG  225 (414)
T ss_pred             chhhhcccCCcchhhhhhhh-h-hhhccchHHHhccCCchhcccc--hHHHHHHHHhhcccccceec-----------cC
Confidence            99999999999999886432 1 4788999999999998887654  22334444558888888742           22


Q ss_pred             ccCCCC--CCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCccc--C-ccc-
Q 042359          276 LQNLTS--LRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGR--I-PRS-  349 (979)
Q Consensus       276 l~~l~~--L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~--~-~~~-  349 (979)
                      +..+..  |+.+++++|.+. ..+..+..+..+..|++..|++..   ...+.....+..+....+ .+...  . ... 
T Consensus       226 l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  300 (414)
T KOG0531|consen  226 LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISN---LEGLERLPKLSELWLNDN-KLALSEAISQEYI  300 (414)
T ss_pred             cccchhHHHHHHhcccCccc-cccccccccccccccchhhccccc---cccccccchHHHhccCcc-hhcchhhhhcccc
Confidence            223333  899999999986 333567788899999999998873   233445556666666666 33211  1 111 


Q ss_pred             ccCCCCCCeeeccCccCCc
Q 042359          350 MASLCNLKSLNLRGVHLSQ  368 (979)
Q Consensus       350 l~~l~~L~~L~L~~n~l~~  368 (979)
                      ....+.++...+..+....
T Consensus       301 ~~~~~~~~~~~~~~~~~~~  319 (414)
T KOG0531|consen  301 TSAAPTLVTLTLELNPIRK  319 (414)
T ss_pred             ccccccccccccccCcccc
Confidence            3344455555555554443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=1.4e-09  Score=108.09  Aligned_cols=182  Identities=24%  Similarity=0.211  Sum_probs=107.8

Q ss_pred             CCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccccCCCCCCEEE
Q 042359          124 HLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLD  203 (979)
Q Consensus       124 ~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~  203 (979)
                      .|++|||+...|+...+-..+..|.+|+.|.|.++++.+.+-..+++-.+|+.|+++.+.-.                  
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~------------------  247 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGF------------------  247 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccccc------------------
Confidence            47777777777765545555667777777777777777766667777777777777765411                  


Q ss_pred             ccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhh-hc-CCCCCCEEECCCCCCCCCCCCCcccccCCccccCCCC
Q 042359          204 LRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLA-TA-NFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTS  281 (979)
Q Consensus       204 l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l~~  281 (979)
                             ......-.+.+++.|.+|++++|.+....... +. --++|+.|+++++.-.- ..     ..+..-...+++
T Consensus       248 -------t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl-~~-----sh~~tL~~rcp~  314 (419)
T KOG2120|consen  248 -------TENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNL-QK-----SHLSTLVRRCPN  314 (419)
T ss_pred             -------chhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhh-hh-----hHHHHHHHhCCc
Confidence                   11122233455666666666666554432211 11 12566677777664210 00     111122346777


Q ss_pred             CCEEeccCCc-CcccCchhhccCCCCCEEeccCCcCccccCcc---cccccCccCEEecCCC
Q 042359          282 LRHLGLDSNH-FNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSE---ALGNLTSISWLDLSLN  339 (979)
Q Consensus       282 L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~---~l~~l~~L~~L~L~~n  339 (979)
                      |.+|||+.|. ++......|.+++.|++|.++.|...   +|.   .+...+.|.+|++.++
T Consensus       315 l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i---~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  315 LVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI---IPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             eeeeccccccccCchHHHHHHhcchheeeehhhhcCC---ChHHeeeeccCcceEEEEeccc
Confidence            8888887764 33333445667788888888887643   233   3556778888888776

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.50  E-value=2.7e-08  Score=99.18  Aligned_cols=211  Identities=20%  Similarity=0.227  Sum_probs=121.9

Q ss_pred             EEEccCCCCCCCChh-hh-cCCCCCCEEECCCCCCCCCCCCCcccccCCccccCCCCCCEEeccCCcCcccCchhhccCC
Q 042359          227 ELRLANCQLHHFSLL-AT-ANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFI  304 (979)
Q Consensus       227 ~L~L~~n~l~~~~~~-~l-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~  304 (979)
                      .|.+.++.|...... .+ ..+..++.+||.+|.+++|       .++-.-+.++|.|+.|+++.|.+...+...-....
T Consensus        49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdW-------seI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~  121 (418)
T KOG2982|consen   49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDW-------SEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLK  121 (418)
T ss_pred             hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccH-------HHHHHHHhcCccceEeeccCCcCCCccccCccccc
Confidence            444444444444331 12 2345666667777776655       44555556677777777777776544433223556


Q ss_pred             CCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCcccccCCCCCCeeeccCccCCcccchhhhhccccccCC
Q 042359          305 HLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNG  384 (979)
Q Consensus       305 ~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~  384 (979)
                      +|++|-|.+..+.-.-....+..++.++.|+++.|               +++.+++..+......++            
T Consensus       122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N---------------~~rq~n~Dd~c~e~~s~~------------  174 (418)
T KOG2982|consen  122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN---------------SLRQLNLDDNCIEDWSTE------------  174 (418)
T ss_pred             ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc---------------hhhhhccccccccccchh------------
Confidence            77777777766653322445667777888888877               344444444444332222            


Q ss_pred             CcEEECcCCcCcc--ccccccCCCCCCcEEeccCCcCcccCc-ccccCCCCCCEEEcCCCcCccccChhhhcCCCCCcEE
Q 042359          385 LESLDLRSDSIYG--HLTDQLGQFKNIVTLDFANNSIVGLIP-ESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWF  461 (979)
Q Consensus       385 L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L  461 (979)
                      +.++.+-.|...-  .+-..-.-++++..+-+..|.+...-. +.+..++.+.-|+|+.|+|...-..+.+.++++|..|
T Consensus       175 v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dl  254 (418)
T KOG2982|consen  175 VLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDL  254 (418)
T ss_pred             hhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhhee
Confidence            3333333332110  000111235677777777776654322 3455667777888888888765556678888888888


Q ss_pred             EccCCccccc
Q 042359          462 RVDGNKLTLG  471 (979)
Q Consensus       462 ~L~~n~l~~~  471 (979)
                      .++++++...
T Consensus       255 Rv~~~Pl~d~  264 (418)
T KOG2982|consen  255 RVSENPLSDP  264 (418)
T ss_pred             eccCCccccc
Confidence            8888887653

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.48  E-value=5e-09  Score=104.35  Aligned_cols=224  Identities=24%  Similarity=0.261  Sum_probs=125.6

Q ss_pred             CEEeCCCCCCCCCCccccccCC--CCCCEEEcCCCCCCCC-CccccCCC-CCCceEecCCCccccCCccccccCCCCCCE
Q 042359          126 SYLDLSFNDFQGIQIPRFFGSM--GNLRYLNLSRTRIGGM-IPHHLGNL-SNLQFLDLSSNYLLYVDNFWWLSGLSFLEH  201 (979)
Q Consensus       126 ~~L~Ls~n~i~~~~lp~~~~~l--~~L~~L~Ls~n~i~~~-~p~~~~~L-~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~  201 (979)
                      +.||+.+-.|.    |+.++.+  ....++.+....+... +.+.+.-. ..||+||||...|+.-.....++.+.+|+.
T Consensus       139 ~~lDl~~r~i~----p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~  214 (419)
T KOG2120|consen  139 QTLDLTGRNIH----PDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKN  214 (419)
T ss_pred             eeeccCCCccC----hhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhh
Confidence            56677666554    3334433  2344444444333221 11222222 358888888777655444445777888888


Q ss_pred             EEccCccCCCCchhhhhcCCCCCccEEEccCC-CCCCCCh-hhhcCCCCCCEEECCCCCCCCCCCCCcccccCCccccC-
Q 042359          202 LDLRSVNLSKAFDWLMVTNKLPSLVELRLANC-QLHHFSL-LATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQN-  278 (979)
Q Consensus       202 L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~-  278 (979)
                      |.+.++++.+  .+...+++-.+|+.|+++.+ .++.... -.+..++.|..|+++||.+...        .+...+.. 
T Consensus       215 lSlEg~~LdD--~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~--------~Vtv~V~hi  284 (419)
T KOG2120|consen  215 LSLEGLRLDD--PIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTE--------KVTVAVAHI  284 (419)
T ss_pred             ccccccccCc--HHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccch--------hhhHHHhhh
Confidence            8888888776  45666777888888888877 3444333 3457788888888888877631        11111111 


Q ss_pred             CCCCCEEeccCCcC---cccCchhhccCCCCCEEeccCCc-CccccCcccccccCccCEEecCCCCCCcccCcccccCCC
Q 042359          279 LTSLRHLGLDSNHF---NSSIPNWLYRFIHLEYLSLSNNS-LQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLC  354 (979)
Q Consensus       279 l~~L~~L~L~~n~l---~~~~p~~l~~l~~L~~L~L~~n~-l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~~l~  354 (979)
                      -++|+.|+++++.-   ...+..-..++++|.+|||++|. ++... ...|..++.|++|.++.|..+.-..--.+...|
T Consensus       285 se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~-~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~p  363 (419)
T KOG2120|consen  285 SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDC-FQEFFKFNYLQHLSLSRCYDIIPETLLELNSKP  363 (419)
T ss_pred             chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchH-HHHHHhcchheeeehhhhcCCChHHeeeeccCc
Confidence            24677777777642   11222223466777777777653 22222 334556667777777776433222222344555


Q ss_pred             CCCeeeccCc
Q 042359          355 NLKSLNLRGV  364 (979)
Q Consensus       355 ~L~~L~L~~n  364 (979)
                      .|.+|++.++
T Consensus       364 sl~yLdv~g~  373 (419)
T KOG2120|consen  364 SLVYLDVFGC  373 (419)
T ss_pred             ceEEEEeccc
Confidence            6666665554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.39  E-value=6.6e-08  Score=96.46  Aligned_cols=92  Identities=21%  Similarity=0.195  Sum_probs=57.0

Q ss_pred             CCCCCCceEecCCCccccCCcccc-ccCCCCCCEEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCC
Q 042359          169 GNLSNLQFLDLSSNYLLYVDNFWW-LSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFS  247 (979)
Q Consensus       169 ~~L~~L~~L~Ls~n~i~~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~  247 (979)
                      ..+..++.|.+.++.|........ -+..+.++.+||.+|.+++..++...+.++|.|+.|+++.|++...+...-....
T Consensus        42 ~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~  121 (418)
T KOG2982|consen   42 SSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLK  121 (418)
T ss_pred             ccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCccccc
Confidence            333445556666665555544332 3456777888888888888777777777777777777777776654432223445


Q ss_pred             CCCEEECCCCCCC
Q 042359          248 SLTVLDLSDNQFD  260 (979)
Q Consensus       248 ~L~~L~Ls~n~l~  260 (979)
                      +|++|-|.+..+.
T Consensus       122 nl~~lVLNgT~L~  134 (418)
T KOG2982|consen  122 NLRVLVLNGTGLS  134 (418)
T ss_pred             ceEEEEEcCCCCC
Confidence            5666666555544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.32  E-value=2.1e-08  Score=111.31  Aligned_cols=180  Identities=27%  Similarity=0.309  Sum_probs=97.9

Q ss_pred             CcccCCCCCccEEEcCCccccccccccccCC-CCCCEEeccCCccc----------ccCChhHHHhhhccceeeccCCcc
Q 042359          642 PYSMGSLTSLVWLHLGENRLSGNILVSLKNC-TALESLDVGENEFV----------GNIPTWIGERFSRMVVLILRSNKF  710 (979)
Q Consensus       642 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~L~~N~l~----------~~ip~~~~~~l~~L~~L~L~~n~l  710 (979)
                      |-.+..+.+|++|.+.++.+...  ..+..+ ..|+.|- ..|.+.          |.+....  ....|...+.++|.+
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LI-C~~Sl~Al~~v~ascggd~~ns~--~Wn~L~~a~fsyN~L  176 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLI-CHNSLDALRHVFASCGGDISNSP--VWNKLATASFSYNRL  176 (1096)
T ss_pred             CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhh-hhccHHHHHHHHHHhccccccch--hhhhHhhhhcchhhH
Confidence            54566677888888888887631  111111 1233322 122211          1111111  123456666667766


Q ss_pred             cCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhh
Q 042359          711 HGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDI  790 (979)
Q Consensus       711 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  790 (979)
                      . ....++.-++.|+.|||++|++...-  .+                                              ..
T Consensus       177 ~-~mD~SLqll~ale~LnLshNk~~~v~--~L----------------------------------------------r~  207 (1096)
T KOG1859|consen  177 V-LMDESLQLLPALESLNLSHNKFTKVD--NL----------------------------------------------RR  207 (1096)
T ss_pred             H-hHHHHHHHHHHhhhhccchhhhhhhH--HH----------------------------------------------Hh
Confidence            5 34455566677777777777765211  11                                              12


Q ss_pred             ccceeEEecccCcccccccc-cccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCC-CCCCCCCCCCE
Q 042359          791 LNLVRMIDISRNNFSGKIPL-EVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIP-ESMSSLTFLNH  868 (979)
Q Consensus       791 ~~~L~~LdLs~N~l~~~ip~-~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip-~~l~~l~~L~~  868 (979)
                      ++.|+.|||++|.+. .+|. ....++ |+.|+|++|.++. + ..+.+|++|+.||+|+|-|++--. .-+..|.+|..
T Consensus       208 l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~t-L-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~  283 (1096)
T KOG1859|consen  208 LPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTT-L-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIV  283 (1096)
T ss_pred             cccccccccccchhc-cccccchhhhh-heeeeecccHHHh-h-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHH
Confidence            334467777777776 4443 223333 7777777777763 2 246677777777777777765311 12345566777


Q ss_pred             EEccCCccccc
Q 042359          869 LNLSNNNLTGK  879 (979)
Q Consensus       869 L~ls~N~l~g~  879 (979)
                      |.|.+|++.+.
T Consensus       284 L~LeGNPl~c~  294 (1096)
T KOG1859|consen  284 LWLEGNPLCCA  294 (1096)
T ss_pred             HhhcCCccccC
Confidence            77777777653

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.23  E-value=3.9e-08  Score=86.77  Aligned_cols=84  Identities=24%  Similarity=0.395  Sum_probs=41.2

Q ss_pred             eEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCC
Q 042359          795 RMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNN  874 (979)
Q Consensus       795 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N  874 (979)
                      +.|+|++|.++ .+|.++..++.|+.||++.|.+. ..|.-+..|.++..||..+|.+. +||-.+-.-+.....++.++
T Consensus        80 t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgne  156 (177)
T KOG4579|consen   80 TTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNE  156 (177)
T ss_pred             hhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCC
Confidence            44555555555 45555555555555555555555 44555555555555555555554 33322221122223334444


Q ss_pred             cccccCC
Q 042359          875 NLTGKIP  881 (979)
Q Consensus       875 ~l~g~ip  881 (979)
                      ++.|.-|
T Consensus       157 pl~~~~~  163 (177)
T KOG4579|consen  157 PLGDETK  163 (177)
T ss_pred             cccccCc
Confidence            4444443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.15  E-value=1.8e-08  Score=111.90  Aligned_cols=104  Identities=28%  Similarity=0.306  Sum_probs=52.8

Q ss_pred             CCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCc-cccCCCCCCEEeccCCcCcccCchh
Q 042359          221 KLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPR-GLQNLTSLRHLGLDSNHFNSSIPNW  299 (979)
Q Consensus       221 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~  299 (979)
                      -++.++.|+|++|+++...  .+..+++|++|||++|++..          +|. ....+. |+.|.+.+|.++..  ..
T Consensus       185 ll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~----------vp~l~~~gc~-L~~L~lrnN~l~tL--~g  249 (1096)
T KOG1859|consen  185 LLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRH----------VPQLSMVGCK-LQLLNLRNNALTTL--RG  249 (1096)
T ss_pred             HHHHhhhhccchhhhhhhH--HHHhcccccccccccchhcc----------ccccchhhhh-heeeeecccHHHhh--hh
Confidence            3444444455554444433  44555555555555555543          221 111222 66666666655432  23


Q ss_pred             hccCCCCCEEeccCCcCccccCcccccccCccCEEecCCC
Q 042359          300 LYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLN  339 (979)
Q Consensus       300 l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n  339 (979)
                      +.++++|+.||+++|-+.+.-....+..+..|+.|.|.+|
T Consensus       250 ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN  289 (1096)
T KOG1859|consen  250 IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN  289 (1096)
T ss_pred             HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence            4556666666666665554333344555556666666666

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.02  E-value=3.5e-07  Score=95.98  Aligned_cols=282  Identities=19%  Similarity=0.127  Sum_probs=131.0

Q ss_pred             CCCCEEEcCCCCCCCCCc--cccCCCCCCceEecCCCccccCCc-cccccCCCCCCEEEccCccCCCCchhhhhcCCCCC
Q 042359          148 GNLRYLNLSRTRIGGMIP--HHLGNLSNLQFLDLSSNYLLYVDN-FWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPS  224 (979)
Q Consensus       148 ~~L~~L~Ls~n~i~~~~p--~~~~~L~~L~~L~Ls~n~i~~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~  224 (979)
                      ..|+.|.+++++-.+.-+  ..-.+++++++|++.++...+... ...-..+++|++|++..+.                
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~----------------  201 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCS----------------  201 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccc----------------
Confidence            357778888776443221  223466777777777765222111 1112334455555444422                


Q ss_pred             ccEEEccCCCCCCCChh-hhcCCCCCCEEECCCCCCCCCCCCCcccccCCccccCCCCCCEEeccCCcCcccCchhh---
Q 042359          225 LVELRLANCQLHHFSLL-ATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWL---  300 (979)
Q Consensus       225 L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l---  300 (979)
                               .++..... ....+++|++|+++|+.--+-       ..+.....+++.++.+.+.+|.=.  .-+.+   
T Consensus       202 ---------~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~-------~gv~~~~rG~~~l~~~~~kGC~e~--~le~l~~~  263 (483)
T KOG4341|consen  202 ---------SITDVSLKYLAEGCRKLKYLNLSWCPQISG-------NGVQALQRGCKELEKLSLKGCLEL--ELEALLKA  263 (483)
T ss_pred             ---------hhHHHHHHHHHHhhhhHHHhhhccCchhhc-------CcchHHhccchhhhhhhhcccccc--cHHHHHHH
Confidence                     22222222 223445555555555532110       112222334444555555544211  11111   


Q ss_pred             -ccCCCCCEEeccCCcCccccCc-ccccccCccCEEecCCCCCCcccCcccc-cCCCCCCeeeccCccCCcccchhhhhc
Q 042359          301 -YRFIHLEYLSLSNNSLQGTIDS-EALGNLTSISWLDLSLNMGIEGRIPRSM-ASLCNLKSLNLRGVHLSQEISEILDIF  377 (979)
Q Consensus       301 -~~l~~L~~L~L~~n~l~~~i~~-~~l~~l~~L~~L~L~~n~~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~~~~  377 (979)
                       +.+..+.++++..+......+. ..-..+..|+.|+.+++..+.+..-..+ .+..+|+.+.+++++.-+..--   ..
T Consensus       264 ~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~f---t~  340 (483)
T KOG4341|consen  264 AAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGF---TM  340 (483)
T ss_pred             hccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhh---hh
Confidence             1233445555545432211111 1112456677777776644443333333 2556777777776653211100   02


Q ss_pred             cccccCCCcEEECcCCcCc--cccccccCCCCCCcEEeccCCcCcccC-----cccccCCCCCCEEEcCCCcCccccChh
Q 042359          378 SGCVSNGLESLDLRSDSIY--GHLTDQLGQFKNIVTLDFANNSIVGLI-----PESLGQLSTLRVLRINDNKLNGTLSAI  450 (979)
Q Consensus       378 ~~~~~~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~Ls~n~l~~~~-----p~~l~~l~~L~~L~L~~n~l~~~l~~~  450 (979)
                      ++.....|+.+++.++...  +.+...-.+++.|+.+.+++|......     ...-..+..|+.+.|++++...+-...
T Consensus       341 l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le  420 (483)
T KOG4341|consen  341 LGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLE  420 (483)
T ss_pred             hhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHH
Confidence            2222223777777666432  122333346777888888877543221     111234566777777777765444444


Q ss_pred             hhcCCCCCcEEEccCC
Q 042359          451 HFANLTKLSWFRVDGN  466 (979)
Q Consensus       451 ~~~~l~~L~~L~L~~n  466 (979)
                      .+..+++|+.+++-++
T Consensus       421 ~l~~c~~Leri~l~~~  436 (483)
T KOG4341|consen  421 HLSICRNLERIELIDC  436 (483)
T ss_pred             HHhhCcccceeeeech
Confidence            5556666666555443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.00  E-value=6.9e-07  Score=79.06  Aligned_cols=111  Identities=28%  Similarity=0.409  Sum_probs=85.2

Q ss_pred             EEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCccccCCC
Q 042359          201 HLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLT  280 (979)
Q Consensus       201 ~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l~  280 (979)
                      .++|+.+++-.+.+....+.....|+..+|++|.+..+++..-...+.++.|++++|.+++          +|..+..++
T Consensus        31 ~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisd----------vPeE~Aam~  100 (177)
T KOG4579|consen   31 FLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISD----------VPEELAAMP  100 (177)
T ss_pred             hcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhh----------chHHHhhhH
Confidence            3444555544444555666677778888888888888888777778889999999999864          788888899


Q ss_pred             CCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCcc
Q 042359          281 SLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSE  323 (979)
Q Consensus       281 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~  323 (979)
                      .|+.|+++.|.+. ..|..+..+.++..|+..+|.+. .++..
T Consensus       101 aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~d  141 (177)
T KOG4579|consen  101 ALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVD  141 (177)
T ss_pred             HhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHH
Confidence            9999999999886 56777778888889998888776 55333

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.94  E-value=2.2e-06  Score=84.74  Aligned_cols=14  Identities=36%  Similarity=0.491  Sum_probs=7.5

Q ss_pred             CCCCceEecCCCcc
Q 042359          171 LSNLQFLDLSSNYL  184 (979)
Q Consensus       171 L~~L~~L~Ls~n~i  184 (979)
                      +..+..+|||+|.|
T Consensus        29 ~d~~~evdLSGNti   42 (388)
T COG5238          29 MDELVEVDLSGNTI   42 (388)
T ss_pred             hcceeEEeccCCcc
Confidence            44555555555554

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.90  E-value=2.3e-05  Score=85.04  Aligned_cols=77  Identities=13%  Similarity=0.114  Sum_probs=53.3

Q ss_pred             cCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCc
Q 042359          645 MGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFL  724 (979)
Q Consensus       645 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  724 (979)
                      +..+.+++.|++++|.++ .+|.   -..+|+.|.+++|.-...+|..+   .++|+.|++++|.....+|.      +|
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~------sL  114 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPE------SV  114 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccccccc------cc
Confidence            445688999999999887 4552   23469999998865545677654   35889999998833334554      46


Q ss_pred             cEEEccCCcc
Q 042359          725 QILDIADNNL  734 (979)
Q Consensus       725 ~~L~Ls~n~l  734 (979)
                      +.|+++++..
T Consensus       115 e~L~L~~n~~  124 (426)
T PRK15386        115 RSLEIKGSAT  124 (426)
T ss_pred             ceEEeCCCCC
Confidence            7777776554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.84  E-value=1.9e-05  Score=75.22  Aligned_cols=108  Identities=27%  Similarity=0.292  Sum_probs=79.0

Q ss_pred             CCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccccCCCCCCEE
Q 042359          123 KHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHL  202 (979)
Q Consensus       123 ~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L  202 (979)
                      .....+||++|.+...   +.|..+++|.+|.|++|+|+.+-|.--.-+++|+.|.|.+|.|..+.+..-+..+++|++|
T Consensus        42 d~~d~iDLtdNdl~~l---~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKL---DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             cccceecccccchhhc---ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence            4567889999988753   3577888999999999999877676556678899999999998888777777888888888


Q ss_pred             EccCccCCCCchh-hhhcCCCCCccEEEccCC
Q 042359          203 DLRSVNLSKAFDW-LMVTNKLPSLVELRLANC  233 (979)
Q Consensus       203 ~l~~n~~~~~~~~-~~~~~~l~~L~~L~L~~n  233 (979)
                      .+-+|+++..... ...+..+|+|+.||++.-
T Consensus       119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             eecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            8888877765332 123345555555555543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.82  E-value=1.3e-05  Score=79.34  Aligned_cols=143  Identities=13%  Similarity=0.113  Sum_probs=73.7

Q ss_pred             CCcEEEEECCCCCCCCchhhHHHhhcccccccccccccCCCCCCEEeCCCCCCCCC--Cc-------cccccCCCCCCEE
Q 042359           83 TGHVLHLDLRNPFNYHKESEYEAIRRTALVGKINPSLLDLKHLSYLDLSFNDFQGI--QI-------PRFFGSMGNLRYL  153 (979)
Q Consensus        83 ~~~v~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~--~l-------p~~~~~l~~L~~L  153 (979)
                      ...++.+||+|+.......           ..+...+.+-++|+..++++-.....  ++       ..++-+|++|+..
T Consensus        29 ~d~~~evdLSGNtigtEA~-----------e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v   97 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAM-----------EELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKV   97 (388)
T ss_pred             hcceeEEeccCCcccHHHH-----------HHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceee
Confidence            3567888998853222111           11223344556777777765322111  11       2334567788888


Q ss_pred             EcCCCCCCCCCccc----cCCCCCCceEecCCCccccCCccc------------cccCCCCCCEEEccCccCCCCch--h
Q 042359          154 NLSRTRIGGMIPHH----LGNLSNLQFLDLSSNYLLYVDNFW------------WLSGLSFLEHLDLRSVNLSKAFD--W  215 (979)
Q Consensus       154 ~Ls~n~i~~~~p~~----~~~L~~L~~L~Ls~n~i~~~~~~~------------~l~~l~~L~~L~l~~n~~~~~~~--~  215 (979)
                      +||.|.+....|..    +++-+.|.+|.+++|.+..+.+..            ....-|.|++..+..|++...+.  |
T Consensus        98 ~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~  177 (388)
T COG5238          98 DLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELS  177 (388)
T ss_pred             eccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHH
Confidence            88888776555543    345567777777777654443321            12234555566666555554321  2


Q ss_pred             hhhcCCCCCccEEEccCCCCC
Q 042359          216 LMVTNKLPSLVELRLANCQLH  236 (979)
Q Consensus       216 ~~~~~~l~~L~~L~L~~n~l~  236 (979)
                      ...+..-..|+++.+..|.|.
T Consensus       178 a~~l~sh~~lk~vki~qNgIr  198 (388)
T COG5238         178 AALLESHENLKEVKIQQNGIR  198 (388)
T ss_pred             HHHHHhhcCceeEEeeecCcC
Confidence            222223344555555555444

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.81  E-value=8.7e-07  Score=93.06  Aligned_cols=288  Identities=18%  Similarity=0.107  Sum_probs=131.5

Q ss_pred             CCCEEeCCCCCCCC-CCccccccCCCCCCEEEcCCCC-CCCCCcccc-CCCCCCceEecCCCc-cccCCccccccCCCCC
Q 042359          124 HLSYLDLSFNDFQG-IQIPRFFGSMGNLRYLNLSRTR-IGGMIPHHL-GNLSNLQFLDLSSNY-LLYVDNFWWLSGLSFL  199 (979)
Q Consensus       124 ~L~~L~Ls~n~i~~-~~lp~~~~~l~~L~~L~Ls~n~-i~~~~p~~~-~~L~~L~~L~Ls~n~-i~~~~~~~~l~~l~~L  199 (979)
                      .|+.|.++++.=.+ .++-....+++++++|++.++. ++...-..+ ..+++|++|++..|. +++........++++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            45555555553211 1122344556666666666553 221111111 345566666666543 2222111123455666


Q ss_pred             CEEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCCh--hhhcCCCCCCEEECCCCC-CCCCCCCCcccccCCccc
Q 042359          200 EHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSL--LATANFSSLTVLDLSDNQ-FDKWFIPSWVFGPIPRGL  276 (979)
Q Consensus       200 ~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~p~~l  276 (979)
                      ++|+++.+.......+.....++..++.+.+.+|.-.+...  ..-+.+..+.++++..+. +++        ..+-..-
T Consensus       219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD--------~~~~~i~  290 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTD--------EDLWLIA  290 (483)
T ss_pred             HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccc--------hHHHHHh
Confidence            66666655433222222233445555555555542222111  111223334444444442 221        1111111


Q ss_pred             cCCCCCCEEeccCCcCcccC-chhh-ccCCCCCEEeccCCcCccccCcccc-cccCccCEEecCCCCCCccc-CcccccC
Q 042359          277 QNLTSLRHLGLDSNHFNSSI-PNWL-YRFIHLEYLSLSNNSLQGTIDSEAL-GNLTSISWLDLSLNMGIEGR-IPRSMAS  352 (979)
Q Consensus       277 ~~l~~L~~L~L~~n~l~~~~-p~~l-~~l~~L~~L~L~~n~l~~~i~~~~l-~~l~~L~~L~L~~n~~l~~~-~~~~l~~  352 (979)
                      ..+..|+.|+.+++...+.. -..+ .+..+|++|.++.++.-+......+ .+++.|+.+++..+....+. +...-.+
T Consensus       291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~  370 (483)
T KOG4341|consen  291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRN  370 (483)
T ss_pred             hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccC
Confidence            34556677777666432211 1112 2456777777777653222212222 25667777777776333322 2222235


Q ss_pred             CCCCCeeeccCccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCCCCcEEeccCCcCc-ccCcccccCCC
Q 042359          353 LCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIV-GLIPESLGQLS  431 (979)
Q Consensus       353 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~  431 (979)
                      ++.|+.+.+++|.......             ++.+           ...-..+..|+.+.++++... ...-+.+..++
T Consensus       371 C~~lr~lslshce~itD~g-------------i~~l-----------~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~  426 (483)
T KOG4341|consen  371 CPRLRVLSLSHCELITDEG-------------IRHL-----------SSSSCSLEGLEVLELDNCPLITDATLEHLSICR  426 (483)
T ss_pred             CchhccCChhhhhhhhhhh-------------hhhh-----------hhccccccccceeeecCCCCchHHHHHHHhhCc
Confidence            6677777777665432210             0000           011223456667777777543 22233456677


Q ss_pred             CCCEEEcCCCcC
Q 042359          432 TLRVLRINDNKL  443 (979)
Q Consensus       432 ~L~~L~L~~n~l  443 (979)
                      +|+.+++.+++-
T Consensus       427 ~Leri~l~~~q~  438 (483)
T KOG4341|consen  427 NLERIELIDCQD  438 (483)
T ss_pred             ccceeeeechhh
Confidence            888888877764

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.79  E-value=2e-05  Score=56.71  Aligned_cols=37  Identities=43%  Similarity=0.556  Sum_probs=18.0

Q ss_pred             CCCEEEcCCCCCCCCCccccCCCCCCceEecCCCcccc
Q 042359          149 NLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLY  186 (979)
Q Consensus       149 ~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~  186 (979)
                      +|++|++++|+|+ .+|..+++|++|++|++++|++.+
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            4555555555555 334445555555555555555443

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.75  E-value=1.3e-05  Score=57.65  Aligned_cols=8  Identities=38%  Similarity=0.762  Sum_probs=2.5

Q ss_pred             EecccCcc
Q 042359          797 IDISRNNF  804 (979)
Q Consensus       797 LdLs~N~l  804 (979)
                      |++++|+|
T Consensus         6 L~l~~N~i   13 (44)
T PF12799_consen    6 LDLSNNQI   13 (44)
T ss_dssp             EEETSSS-
T ss_pred             EEccCCCC
Confidence            33333333

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.63  E-value=9.8e-05  Score=70.48  Aligned_cols=62  Identities=23%  Similarity=0.251  Sum_probs=28.3

Q ss_pred             CccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCccccCCCCCCEEeccCCcCc
Q 042359          224 SLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFN  293 (979)
Q Consensus       224 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~  293 (979)
                      .|..|.+++|+|+.+.+.--..+++|+.|.|.+|.+.++       +++ ..+..+++|++|.+-+|.++
T Consensus        65 rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l-------~dl-~pLa~~p~L~~Ltll~Npv~  126 (233)
T KOG1644|consen   65 RLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQEL-------GDL-DPLASCPKLEYLTLLGNPVE  126 (233)
T ss_pred             ccceEEecCCcceeeccchhhhccccceEEecCcchhhh-------hhc-chhccCCccceeeecCCchh
Confidence            333333333344433333333445555666666655432       222 22344555555555555543

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.52  E-value=0.00026  Score=77.04  Aligned_cols=32  Identities=13%  Similarity=0.209  Sum_probs=16.0

Q ss_pred             CCCCEEeccCCcccccCChhHHHhhhccceeeccCC
Q 042359          673 TALESLDVGENEFVGNIPTWIGERFSRMVVLILRSN  708 (979)
Q Consensus       673 ~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n  708 (979)
                      ++|++|++++|... .+|..+   ..+|+.|.++.+
T Consensus       156 sSLk~L~Is~c~~i-~LP~~L---P~SLk~L~ls~n  187 (426)
T PRK15386        156 PSLKTLSLTGCSNI-ILPEKL---PESLQSITLHIE  187 (426)
T ss_pred             CcccEEEecCCCcc-cCcccc---cccCcEEEeccc
Confidence            45666666665543 233322   135555555544

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.47  E-value=6.8e-05  Score=74.90  Aligned_cols=95  Identities=22%  Similarity=0.269  Sum_probs=66.3

Q ss_pred             ccccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCC--CCCCCCccccCCCCCCceEecCCCccccCCcccc
Q 042359          115 INPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRT--RIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWW  192 (979)
Q Consensus       115 ~~~~l~~l~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n--~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~  192 (979)
                      +..-.-.+..|+.|++.+..++..   ..+-.+++|++|.+|.|  ++.+.++-....+++|++|+++.|+|..+....-
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p  111 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP  111 (260)
T ss_pred             cccccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch
Confidence            444444556667777766666543   23556889999999999  6666666666677899999999998877666555


Q ss_pred             ccCCCCCCEEEccCccCCCC
Q 042359          193 LSGLSFLEHLDLRSVNLSKA  212 (979)
Q Consensus       193 l~~l~~L~~L~l~~n~~~~~  212 (979)
                      +..+.+|..|++..|..+..
T Consensus       112 l~~l~nL~~Ldl~n~~~~~l  131 (260)
T KOG2739|consen  112 LKELENLKSLDLFNCSVTNL  131 (260)
T ss_pred             hhhhcchhhhhcccCCcccc
Confidence            66666677777766665554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.47  E-value=4.7e-05  Score=90.13  Aligned_cols=35  Identities=17%  Similarity=0.433  Sum_probs=14.4

Q ss_pred             CCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCC
Q 042359          220 NKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSD  256 (979)
Q Consensus       220 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~  256 (979)
                      .++|+|..||+++.+++.+  ..++.+++|++|.+.+
T Consensus       170 ~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrn  204 (699)
T KOG3665|consen  170 ASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRN  204 (699)
T ss_pred             hccCccceeecCCCCccCc--HHHhccccHHHHhccC
Confidence            3344444444444444333  2334444444444433

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.42  E-value=5.9e-05  Score=89.31  Aligned_cols=134  Identities=21%  Similarity=0.257  Sum_probs=84.5

Q ss_pred             CCCCEEeCCCCCCCCCCcccccc-CCCCCCEEEcCCCCCCCC-CccccCCCCCCceEecCCCccccCCccccccCCCCCC
Q 042359          123 KHLSYLDLSFNDFQGIQIPRFFG-SMGNLRYLNLSRTRIGGM-IPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLE  200 (979)
Q Consensus       123 ~~L~~L~Ls~n~i~~~~lp~~~~-~l~~L~~L~Ls~n~i~~~-~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~  200 (979)
                      .+|++||+++...-...=|..++ .||.|+.|.+++-.+... .-....++++|..||+|++.+..+.+   +++|++|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~G---IS~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSG---ISRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHH---HhccccHH
Confidence            46777777775432211233333 467777777777655422 22334567777777777777766633   66777777


Q ss_pred             EEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCCh------hhhcCCCCCCEEECCCCCCC
Q 042359          201 HLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSL------LATANFSSLTVLDLSDNQFD  260 (979)
Q Consensus       201 ~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~l~~l~~L~~L~Ls~n~l~  260 (979)
                      +|.+.+-.+....++ ..+.++++|+.||+|.........      +.-..+|+|+.||.|+..+.
T Consensus       199 ~L~mrnLe~e~~~~l-~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDL-IDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             HHhccCCCCCchhhH-HHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            777777777664443 344568888888888765444331      22345789999999988776

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.95  E-value=3.8e-05  Score=76.52  Aligned_cols=87  Identities=25%  Similarity=0.270  Sum_probs=74.1

Q ss_pred             CCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccccCCCCCC
Q 042359          121 DLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLE  200 (979)
Q Consensus       121 ~l~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~  200 (979)
                      .+.+.+.|+.-++.++.+.   ...+++.|++|.||-|.|+..-|  +..+++|++|.|..|.|.+++...++.++++|+
T Consensus        17 dl~~vkKLNcwg~~L~DIs---ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr   91 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDIS---ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLR   91 (388)
T ss_pred             HHHHhhhhcccCCCccHHH---HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence            3567788999999998764   35689999999999999986544  789999999999999999999999999999999


Q ss_pred             EEEccCccCCCC
Q 042359          201 HLDLRSVNLSKA  212 (979)
Q Consensus       201 ~L~l~~n~~~~~  212 (979)
                      .|.|..|...+.
T Consensus        92 ~LWL~ENPCc~~  103 (388)
T KOG2123|consen   92 TLWLDENPCCGE  103 (388)
T ss_pred             hHhhccCCcccc
Confidence            999988877653

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.48  E-value=0.0015  Score=65.60  Aligned_cols=93  Identities=20%  Similarity=0.234  Sum_probs=48.0

Q ss_pred             cccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCcccc-ccCCCCCCEEEccCccCCCCchhhhhc
Q 042359          141 PRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWW-LSGLSFLEHLDLRSVNLSKAFDWLMVT  219 (979)
Q Consensus       141 p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~~~~  219 (979)
                      ....-.+..|+.|++.+..++..  ..+-.|++|+.|++|.|+......... ..++++|++|++++|++..+. -...+
T Consensus        36 ~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~ls-tl~pl  112 (260)
T KOG2739|consen   36 GGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLS-TLRPL  112 (260)
T ss_pred             ccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccc-ccchh
Confidence            33344556677777777666532  345567778888888774322222211 233466666666666555421 12233


Q ss_pred             CCCCCccEEEccCCCCC
Q 042359          220 NKLPSLVELRLANCQLH  236 (979)
Q Consensus       220 ~~l~~L~~L~L~~n~l~  236 (979)
                      ..+.+|..|++.+|..+
T Consensus       113 ~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen  113 KELENLKSLDLFNCSVT  129 (260)
T ss_pred             hhhcchhhhhcccCCcc
Confidence            34444444444444333

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.21  E-value=0.0098  Score=55.14  Aligned_cols=81  Identities=17%  Similarity=0.270  Sum_probs=31.9

Q ss_pred             CCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEE
Q 042359          599 ETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESL  678 (979)
Q Consensus       599 ~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  678 (979)
                      .+++|+.+.+.. .+...-..+|.++++|+.+.+.++ +...-...|..+++|+.+.+.+ .+.......|.++++|+.+
T Consensus        10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i   86 (129)
T PF13306_consen   10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI   86 (129)
T ss_dssp             T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred             CCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccc
Confidence            344555555543 233333344555555666655553 3323333455555555555544 3322223344455555555


Q ss_pred             eccC
Q 042359          679 DVGE  682 (979)
Q Consensus       679 ~L~~  682 (979)
                      ++..
T Consensus        87 ~~~~   90 (129)
T PF13306_consen   87 DIPS   90 (129)
T ss_dssp             EETT
T ss_pred             ccCc
Confidence            5544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.17  E-value=0.014  Score=54.13  Aligned_cols=55  Identities=22%  Similarity=0.386  Sum_probs=22.0

Q ss_pred             cccCCCCCCcEEeccCCcCcccCcccccCCCCCCEEEcCCCcCccccChhhhcCCCCCc
Q 042359          401 DQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLS  459 (979)
Q Consensus       401 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~  459 (979)
                      ..|..+++|+.+++..+ +.......|.++ +|+.+.+.. .+. .++...|.++++|+
T Consensus        75 ~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   75 NAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NIT-KIEENAFKNCTKLK  129 (129)
T ss_dssp             TTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-S-S----GGG------
T ss_pred             ccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-Ccc-EECCccccccccCC
Confidence            35556677777777554 443444456665 677777665 222 44555666666553

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.99  E-value=0.0015  Score=76.44  Aligned_cols=115  Identities=23%  Similarity=0.139  Sum_probs=57.9

Q ss_pred             CCCCCCEEeCCCCC-CCCCCccccccCCCCCCEEEcCCC-CCCCCC----ccccCCCCCCceEecCCCc-cccCCccccc
Q 042359          121 DLKHLSYLDLSFND-FQGIQIPRFFGSMGNLRYLNLSRT-RIGGMI----PHHLGNLSNLQFLDLSSNY-LLYVDNFWWL  193 (979)
Q Consensus       121 ~l~~L~~L~Ls~n~-i~~~~lp~~~~~l~~L~~L~Ls~n-~i~~~~----p~~~~~L~~L~~L~Ls~n~-i~~~~~~~~l  193 (979)
                      .++.|+.|.+.++. +....+-.....+++|+.|+++++ ......    ......+++|+.|+++.+. +.+.......
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            35677777776663 332112234556777777777763 111111    1233445667777777666 3333222222


Q ss_pred             cCCCCCCEEEccCccCCCCchhhhhcCCCCCccEEEccCCCC
Q 042359          194 SGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQL  235 (979)
Q Consensus       194 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l  235 (979)
                      ..+++|++|.+.++.-.....+......++.|++|+++.|..
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            335666666655554222223334445556666666665543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.85  E-value=0.0041  Score=37.13  Aligned_cols=19  Identities=53%  Similarity=0.805  Sum_probs=8.6

Q ss_pred             CCEEECcCCcccccCCCCCC
Q 042359          842 LESIDFSANQLSGEIPESMS  861 (979)
Q Consensus       842 L~~LdLs~N~l~~~ip~~l~  861 (979)
                      |++|||++|+++ .+|.+|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            444444444444 4444333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.84  E-value=0.00053  Score=68.60  Aligned_cols=61  Identities=21%  Similarity=0.224  Sum_probs=37.8

Q ss_pred             CCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccccCCCCCCEEEccCccCCCC
Q 042359          147 MGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKA  212 (979)
Q Consensus       147 l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~l~~n~~~~~  212 (979)
                      +.+.+.|++-+|.+.++  ....+|+.|++|.||-|+|.++..   +..+++|++|.|..|.|.++
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p---l~rCtrLkElYLRkN~I~sl   78 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP---LQRCTRLKELYLRKNCIESL   78 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh---HHHHHHHHHHHHHhcccccH
Confidence            45667777777777643  234567777777777777666554   44555555555555555544

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.57  E-value=0.005  Score=36.75  Aligned_cols=19  Identities=42%  Similarity=0.607  Sum_probs=9.6

Q ss_pred             CCEEeCCCCcceeccCCCCC
Q 042359          818 LQSLNFSYNSFTGRIPESIG  837 (979)
Q Consensus       818 L~~L~Ls~N~l~~~ip~~~~  837 (979)
                      |+.|||++|+|+ .+|.+|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            445555555555 4554444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.39  E-value=0.0034  Score=73.43  Aligned_cols=223  Identities=24%  Similarity=0.114  Sum_probs=123.3

Q ss_pred             ccccCCCCCCEEeCCCC-C-CCCCC--ccccccCCCCCCEEEcCCCC-CCCCCccccC-CCCCCceEecCCCc-cccCCc
Q 042359          117 PSLLDLKHLSYLDLSFN-D-FQGIQ--IPRFFGSMGNLRYLNLSRTR-IGGMIPHHLG-NLSNLQFLDLSSNY-LLYVDN  189 (979)
Q Consensus       117 ~~l~~l~~L~~L~Ls~n-~-i~~~~--lp~~~~~l~~L~~L~Ls~n~-i~~~~p~~~~-~L~~L~~L~Ls~n~-i~~~~~  189 (979)
                      +.....++|+.|+++++ . +....  .......+++|+.|+++.+. ++...-..++ .+++|++|.+.++. +++...
T Consensus       208 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl  287 (482)
T KOG1947|consen  208 ALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGL  287 (482)
T ss_pred             HHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHH
Confidence            34567899999999973 2 22110  12345567999999999998 6544333333 38899999988887 555555


Q ss_pred             cccccCCCCCCEEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCccc
Q 042359          190 FWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVF  269 (979)
Q Consensus       190 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  269 (979)
                      .....+++.|++|+++++.......+......+++++.|.+....-          ++.++.+.+....-...      .
T Consensus       288 ~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------c~~l~~~~l~~~~~~~~------d  351 (482)
T KOG1947|consen  288 VSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------CPSLTDLSLSGLLTLTS------D  351 (482)
T ss_pred             HHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------CccHHHHHHHHhhccCc------h
Confidence            5567789999999999888764444444455677777766544321          23333333322211100      0


Q ss_pred             ccCCccccCCCCCCEEeccCCcCcccC-chhhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCcc
Q 042359          270 GPIPRGLQNLTSLRHLGLDSNHFNSSI-PNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPR  348 (979)
Q Consensus       270 ~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~  348 (979)
                      ......+..+++++++.+..+...... ...+.+++.|. ..+...          .....+++.|+++.+...+...-.
T Consensus       352 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~----------~~~~~~l~~L~l~~~~~~t~~~l~  420 (482)
T KOG1947|consen  352 DLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELR----------LCRSDSLRVLNLSDCRLVTDKGLR  420 (482)
T ss_pred             hHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHH----------hccCCccceEecccCccccccchH
Confidence            111223456677777777776632221 13334445442 111111          111112667777766434433322


Q ss_pred             cccC-CCCCCeeeccCccC
Q 042359          349 SMAS-LCNLKSLNLRGVHL  366 (979)
Q Consensus       349 ~l~~-l~~L~~L~L~~n~l  366 (979)
                      .... +..++.+++.++..
T Consensus       421 ~~~~~~~~~~~l~~~~~~~  439 (482)
T KOG1947|consen  421 CLADSCSNLKDLDLSGCRV  439 (482)
T ss_pred             HHhhhhhccccCCccCccc
Confidence            2222 55566666666543

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.45  E-value=0.00091  Score=75.94  Aligned_cols=163  Identities=24%  Similarity=0.218  Sum_probs=85.6

Q ss_pred             CCCcEEEcccccccccCChhhhhcccCC-CcccEEeccCcccccc----CCccccCCCCCCEEEccCCcccc----cCCc
Q 042359          573 SNLVFLDLSNNLFSGSISPFLCYRINET-KSLNALQLNDNYLNGE----LPDCWMSYQNLKTLKLSNNKFTG----NLPY  643 (979)
Q Consensus       573 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~-~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~----~~p~  643 (979)
                      ..|+.|+++.|.+.+.....++..+... ..+++|++..|.+++.    +...+.....++.++++.|.+..    .++.
T Consensus       115 ~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~  194 (478)
T KOG4308|consen  115 PTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQ  194 (478)
T ss_pred             ccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhh
Confidence            3455555555555544333444433333 4455555555555432    23344445566666666665520    1122


Q ss_pred             ccC----CCCCccEEEcCCccccccc----cccccCCCC-CCEEeccCCcccccCChhHHHh---h-hccceeeccCCcc
Q 042359          644 SMG----SLTSLVWLHLGENRLSGNI----LVSLKNCTA-LESLDVGENEFVGNIPTWIGER---F-SRMVVLILRSNKF  710 (979)
Q Consensus       644 ~l~----~l~~L~~L~L~~n~l~~~~----p~~l~~l~~-L~~L~L~~N~l~~~ip~~~~~~---l-~~L~~L~L~~n~l  710 (979)
                      .+.    ...++++|.+++|.++...    -..+...++ +..|++.+|++.+..-..+...   + ..++.++++.|++
T Consensus       195 ~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi  274 (478)
T KOG4308|consen  195 ALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSI  274 (478)
T ss_pred             hhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCc
Confidence            222    3556777777777765221    123334444 5567777777653311111111   2 3457777777777


Q ss_pred             cCCC----CccccCCCCccEEEccCCccc
Q 042359          711 HGPL----PTGLCDLAFLQILDIADNNLS  735 (979)
Q Consensus       711 ~~~~----p~~l~~l~~L~~L~Ls~n~l~  735 (979)
                      +..-    ...+..++.++.+.+++|.+.
T Consensus       275 ~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  275 TEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             cccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            6543    334556677888888888775

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.08  E-value=0.0035  Score=61.25  Aligned_cols=83  Identities=18%  Similarity=0.209  Sum_probs=74.0

Q ss_pred             cceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEc
Q 042359          792 NLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNL  871 (979)
Q Consensus       792 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l  871 (979)
                      ...+.||++.|++. ..-..++-++.|..||+|.|++. ..|+.++++..+..+++..|..+ ..|.+++..+.++++++
T Consensus        42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence            34578999999987 55566777888999999999999 89999999999999999999998 78999999999999999


Q ss_pred             cCCccc
Q 042359          872 SNNNLT  877 (979)
Q Consensus       872 s~N~l~  877 (979)
                      -.|+|.
T Consensus       119 k~~~~~  124 (326)
T KOG0473|consen  119 KKTEFF  124 (326)
T ss_pred             ccCcch
Confidence            999887

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=92.40  E-value=0.0029  Score=71.92  Aligned_cols=38  Identities=26%  Similarity=0.371  Sum_probs=22.9

Q ss_pred             CcEEECcCCcCcccc----ccccCCCCCCcEEeccCCcCccc
Q 042359          385 LESLDLRSDSIYGHL----TDQLGQFKNIVTLDFANNSIVGL  422 (979)
Q Consensus       385 L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~Ls~n~l~~~  422 (979)
                      ++.++++.|.++...    ...+..++.++++.+++|.+...
T Consensus       264 l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~  305 (478)
T KOG4308|consen  264 LRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY  305 (478)
T ss_pred             hhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence            555666666555432    33445566778888888777643

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=90.90  E-value=0.12  Score=28.46  Aligned_cols=9  Identities=33%  Similarity=0.689  Sum_probs=3.0

Q ss_pred             CEEECcCCc
Q 042359          843 ESIDFSANQ  851 (979)
Q Consensus       843 ~~LdLs~N~  851 (979)
                      +.|||++|+
T Consensus         4 ~~L~l~~n~   12 (17)
T PF13504_consen    4 RTLDLSNNR   12 (17)
T ss_dssp             SEEEETSS-
T ss_pred             CEEECCCCC
Confidence            333333333

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.80  E-value=0.077  Score=51.36  Aligned_cols=85  Identities=22%  Similarity=0.141  Sum_probs=63.9

Q ss_pred             CCCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCccccc-ccCccCEEecCCCCCCcccCcccccCCCCCCe
Q 042359          280 TSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALG-NLTSISWLDLSLNMGIEGRIPRSMASLCNLKS  358 (979)
Q Consensus       280 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~-~l~~L~~L~L~~n~~l~~~~~~~l~~l~~L~~  358 (979)
                      ..++.+|-++..+...--+.+.+++.++.|.+.+|.--+....+.++ -.++|+.|++++|+.+++.-...+..+++|+.
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~  180 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR  180 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence            35788888888877666666778888888888888654322223333 34789999999998888888888888999998


Q ss_pred             eeccCc
Q 042359          359 LNLRGV  364 (979)
Q Consensus       359 L~L~~n  364 (979)
                      |.+.+-
T Consensus       181 L~l~~l  186 (221)
T KOG3864|consen  181 LHLYDL  186 (221)
T ss_pred             HHhcCc
Confidence            888764

>smart00370 LRR Leucine-rich repeats, outliers

Probab=84.99  E-value=0.6  Score=29.02  Aligned_cols=14  Identities=50%  Similarity=0.684  Sum_probs=7.1

Q ss_pred             CCCCEEECcCCccc
Q 042359          840 RSLESIDFSANQLS  853 (979)
Q Consensus       840 ~~L~~LdLs~N~l~  853 (979)
                      ++|++|+|++|+|+
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34555555555554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=84.99  E-value=0.6  Score=29.02  Aligned_cols=14  Identities=50%  Similarity=0.684  Sum_probs=7.1

Q ss_pred             CCCCEEECcCCccc
Q 042359          840 RSLESIDFSANQLS  853 (979)
Q Consensus       840 ~~L~~LdLs~N~l~  853 (979)
                      ++|++|+|++|+|+
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34555555555554

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=81.44  E-value=0.089  Score=51.79  Aligned_cols=61  Identities=11%  Similarity=0.132  Sum_probs=53.5

Q ss_pred             cceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccc
Q 042359          792 NLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSG  854 (979)
Q Consensus       792 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~  854 (979)
                      +.+..||+|.|.+. ..|.+++++..+..+++-.|..+ ..|.+++.++.++++|+-.|.+.-
T Consensus        65 t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~~  125 (326)
T KOG0473|consen   65 TRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFFR  125 (326)
T ss_pred             HHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcchH
Confidence            34467899999988 88999999999999999999988 899999999999999999998763

>smart00370 LRR Leucine-rich repeats, outliers

Probab=80.51  E-value=1.7  Score=26.98  Aligned_cols=18  Identities=39%  Similarity=0.359  Sum_probs=8.0

Q ss_pred             CccEEEccCCCCCCCChh
Q 042359          224 SLVELRLANCQLHHFSLL  241 (979)
Q Consensus       224 ~L~~L~L~~n~l~~~~~~  241 (979)
                      +|+.|+|++|+++.++..
T Consensus         3 ~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        3 NLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCEEECCCCcCCcCCHH
Confidence            344444444444444433

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=80.51  E-value=1.7  Score=26.98  Aligned_cols=18  Identities=39%  Similarity=0.359  Sum_probs=8.0

Q ss_pred             CccEEEccCCCCCCCChh
Q 042359          224 SLVELRLANCQLHHFSLL  241 (979)
Q Consensus       224 ~L~~L~L~~n~l~~~~~~  241 (979)
                      +|+.|+|++|+++.++..
T Consensus         3 ~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        3 NLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCEEECCCCcCCcCCHH
Confidence            344444444444444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	979
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-36
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-36
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-14
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-13
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		3e-10
4fmz_A	347	Crystal Structure Of An Internalin (Inlf) From List		6e-09
3j0a_A	844	Homology Model Of Human Toll-Like Receptor 5 Fitted		2e-05
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		4e-05
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		7e-04
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		4e-05
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		7e-05
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		6e-04
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		8e-05
3v47_A	455	Crystal Structure Of The N-Tetminal Fragment Of Zeb		1e-04
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		2e-04
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		3e-04
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		3e-04
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		3e-04
3b2d_A	603	Crystal Structure Of Human Rp105MD-1 Complex Length		7e-04
3rg1_A	612	Crystal Structure Of The Rp105MD-1 Complex Length =		8e-04
1ook_G	290	Crystal Structure Of The Complex Of Platelet Recept		9e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  151 bits (381), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 230/877 (26%), Positives = 359/877 (40%), Gaps = 156/877 (17%)
Query: 44  EKEALLSFKRDLKDPSNRLASWSGNGDCCAWAGVFCDNITGHVLHLDLRN-PFNYHKESE 102
           E   L+SFK  L D  N L  WS N + C + GV C +    V  +DL + P N      
Sbjct: 10  EIHQLISFKDVLPD-KNLLPDWSSNKNPCTFDGVTCRD--DKVTSIDLSSKPLN------ 60
Query: 103 YEAIRRTALVGKINPXXXXXXXXXXXXXXFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGG 162
              +  +A+   +                     G      F    +L  L+LSR  + G
Sbjct: 61  ---VGFSAVSSSLLSLTGLESLFLSNSHINGSVSG------FKCSASLTSLDLSRNSLSG 111
Query: 163 MIPH--HLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDL--RSVNLSKAFDWLMV 218
            +     LG+ S L+FL++SSN L +         L+ LE LDL   S++ +    W++ 
Sbjct: 112 PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVL- 170
Query: 219 TNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQN 278
                                   +     L  L +S N+         + G +   +  
Sbjct: 171 ------------------------SDGCGELKHLAISGNK---------ISGDV--DVSR 195
Query: 279 LTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSL 338
             +L  L + SN+F++ IP +L     L++L +S N L G   S A+   T +  L++S 
Sbjct: 196 CVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISS 253
Query: 339 NMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGH 398
           N  + G IP        LKSL    +  ++   EI D  SG   + L  LDL  +  YG 
Sbjct: 254 NQFV-GPIPP-----LPLKSLQYLSLAENKFTGEIPDFLSGAC-DTLTGLDLSGNHFYGA 306
Query: 399 LTDQLGQFKNIVTLDFANNSIVGLIP-ESLGQLSTLRVLRINDNKLNGTLSAIHFANLTK 457
           +    G    + +L  ++N+  G +P ++L ++  L+VL ++ N+ +G L      +LT 
Sbjct: 307 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE----SLTN 362
Query: 458 LSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKH-LQFLYLVNSSI 516
           LS      + LTL +                N + G   P    + K+ LQ LYL N+  
Sbjct: 363 LS-----ASLLTLDLS--------------SNNFSGPILPNLCQNPKNTLQELYLQNNGF 403
Query: 517 SDIFPIRFLKSASQLKFLDLGQNQIHGPIPN-LTEFTGLLILSVYSNNMSGPLPLISSNL 575
           +   P   L + S+L  L L  N + G IP+ L   + L  L ++ N + G +P     L
Sbjct: 404 TGKIPPT-LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP---QEL 459
Query: 576 VFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNN 635
           +++                      K+L  L L+ N L GE+P    +  NL  + LSNN
Sbjct: 460 MYV----------------------KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 497
Query: 636 KFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGE 695
           + TG +P  +G L +L  L L  N  SGNI   L +C +L  LD+  N F G IP  +  
Sbjct: 498 RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM-- 555
Query: 696 RFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFT 755
                                      F Q   IA N ++G     I N  GM   C   
Sbjct: 556 ---------------------------FKQSGKIAANFIAGKRYVYIKN-DGMKKECHGA 587
Query: 756 RSVQQYLPLPIDVGVILVEK-----ASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPL 810
            ++ ++  +  +    L  +      S V  G      D    +  +D+S N  SG IP 
Sbjct: 588 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK 647
Query: 811 EVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMXXXXXXXXXX 870
           E+ ++  L  LN  +N  +G IP+ +G +R L  +D S+N+L G IP++M          
Sbjct: 648 EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 707
Query: 871 XXXXXXTGKIPSSTQLQSFDVSSFAGN-DLCGAPLPK 906
                 +G IP   Q ++F  + F  N  LCG PLP+
Sbjct: 708 LSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 744

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  151 bits (381), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 232/878 (26%), Positives = 361/878 (41%), Gaps = 158/878 (17%)
Query: 44  EKEALLSFKRDLKDPSNRLASWSGNGDCCAWAGVFCDNITGHVLHLDLRN-PFNYHKESE 102
           E   L+SFK  L D  N L  WS N + C + GV C +    V  +DL + P N      
Sbjct: 13  EIHQLISFKDVLPD-KNLLPDWSSNKNPCTFDGVTCRD--DKVTSIDLSSKPLN------ 63
Query: 103 YEAIRRTALVGKINPXXXXXXXXXXXXXXFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGG 162
              +  +A+   +                     G      F    +L  L+LSR  + G
Sbjct: 64  ---VGFSAVSSSLLSLTGLESLFLSNSHINGSVSG------FKCSASLTSLDLSRNSLSG 114
Query: 163 MIPH--HLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDL--RSVNLSKAFDWLMV 218
            +     LG+ S L+FL++SSN L +         L+ LE LDL   S++ +    W++ 
Sbjct: 115 PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLS 174
Query: 219 TNKLPSLVELRLANC-QLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQ 277
                         C +L H              L +S N+         + G +   + 
Sbjct: 175 DG------------CGELKH--------------LAISGNK---------ISGDV--DVS 197
Query: 278 NLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLS 337
              +L  L + SN+F++ IP +L     L++L +S N L G   S A+   T +  L++S
Sbjct: 198 RCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNIS 255
Query: 338 LNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYG 397
            N  + G IP        LKSL    +  ++   EI D  SG   + L  LDL  +  YG
Sbjct: 256 SNQFV-GPIPP-----LPLKSLQYLSLAENKFTGEIPDFLSGAC-DTLTGLDLSGNHFYG 308
Query: 398 HLTDQLGQFKNIVTLDFANNSIVGLIP-ESLGQLSTLRVLRINDNKLNGTLSAIHFANLT 456
            +    G    + +L  ++N+  G +P ++L ++  L+VL ++ N+ +G L      +LT
Sbjct: 309 AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE----SLT 364
Query: 457 KLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKH-LQFLYLVNSS 515
            LS      + LTL +                N + G   P    + K+ LQ LYL N+ 
Sbjct: 365 NLS-----ASLLTLDLS--------------SNNFSGPILPNLCQNPKNTLQELYLQNNG 405
Query: 516 ISDIFPIRFLKSASQLKFLDLGQNQIHGPIPN-LTEFTGLLILSVYSNNMSGPLPLISSN 574
            +   P   L + S+L  L L  N + G IP+ L   + L  L ++ N + G +P     
Sbjct: 406 FTGKIPPT-LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP---QE 461
Query: 575 LVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSN 634
           L+++                      K+L  L L+ N L GE+P    +  NL  + LSN
Sbjct: 462 LMYV----------------------KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 499
Query: 635 NKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIG 694
           N+ TG +P  +G L +L  L L  N  SGNI   L +C +L  LD+  N F G IP  + 
Sbjct: 500 NRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM- 558
Query: 695 ERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSF 754
                                       F Q   IA N ++G     I N  GM   C  
Sbjct: 559 ----------------------------FKQSGKIAANFIAGKRYVYIKN-DGMKKECHG 589
Query: 755 TRSVQQYLPLPIDVGVILVEK-----ASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIP 809
             ++ ++  +  +    L  +      S V  G      D    +  +D+S N  SG IP
Sbjct: 590 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649
Query: 810 LEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMXXXXXXXXX 869
            E+ ++  L  LN  +N  +G IP+ +G +R L  +D S+N+L G IP++M         
Sbjct: 650 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709
Query: 870 XXXXXXXTGKIPSSTQLQSFDVSSFAGN-DLCGAPLPK 906
                  +G IP   Q ++F  + F  N  LCG PLP+
Sbjct: 710 DLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 747

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 114/228 (50%), Gaps = 16/228 (7%)
Query: 521 PIRFLKSASQLKFLDL----GQNQIHGPIP-NLTEFTGLLILSVYSNNMSGPLPLISSN- 574
           P     S + L +L+     G N + GPIP  + + T L  L +   N+SG +P   S  
Sbjct: 65  PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124
Query: 575 --LVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKT-LK 631
             LV LD S N  SG++ P     I+   +L  +  + N ++G +PD + S+  L T + 
Sbjct: 125 KTLVTLDFSYNALSGTLPP----SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT 180
Query: 632 LSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPT 691
           +S N+ TG +P +  +L +L ++ L  N L G+  V   +    + + + +N    ++  
Sbjct: 181 ISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-G 238
Query: 692 WIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIP 739
            +G     +  L LR+N+ +G LP GL  L FL  L+++ NNL G IP
Sbjct: 239 KVGLS-KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 98/231 (42%), Gaps = 33/231 (14%)
Query: 708 NKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLP---- 763
           N   GP+P  +  L  L  L I   N+SGAIP+ ++ +  +VT      ++   LP    
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 764 -LPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNL------- 815
            LP  VG+      + +S      Y     L   + ISRN  +GKIP    NL       
Sbjct: 147 SLPNLVGITF--DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDL 204
Query: 816 ----------------KALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPES 859
                           K  Q ++ + NS    + + +G+ ++L  +D   N++ G +P+ 
Sbjct: 205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQG 263
Query: 860 MXXXXXXXXXXXXXXXXTGKIPSSTQLQSFDVSSFAGND-LCGAPLPKNCT 909
           +                 G+IP    LQ FDVS++A N  LCG+PLP  CT
Sbjct: 264 LTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPA-CT 313

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 99/336 (29%), Positives = 156/336 (46%), Gaps = 46/336 (13%)
Query: 222 LPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTS 281
           L  LV++ + N Q+   + LA  N ++LT L L +NQ            P    L+NLT+
Sbjct: 84  LTKLVDILMNNNQIADITPLA--NLTNLTGLTLFNNQITD-------IDP----LKNLTN 130
Query: 282 LRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMG 341
           L  L L SN    S  + L     L+ L+ S+N +    D + L NLT++  LD+S N  
Sbjct: 131 LNRLELSSNTI--SDISALSGLTSLQQLNFSSNQV---TDLKPLANLTTLERLDISSNKV 185
Query: 342 IEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTD 401
            +  +   +A L NL+SL    +  + +IS+I  +  G ++N L+ L L  + +    T 
Sbjct: 186 SDISV---LAKLTNLESL----IATNNQISDITPL--GILTN-LDELSLNGNQLKDIGT- 234
Query: 402 QLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWF 461
            L    N+  LD ANN I  L P  L  L+ L  L++  N+++   +    A LT L+  
Sbjct: 235 -LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS---NISPLAGLTALTNL 288
Query: 462 RVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLW-LYSQKHLQFLYLVNSSISDIF 520
            ++ N+L      D  P   L  L     Y  +   +  + S   LQ L+  N+ +SD  
Sbjct: 289 ELNENQL-----EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSD-- 341
Query: 521 PIRFLKSASQLKFLDLGQNQIHG--PIPNLTEFTGL 554
            +  L + + + +L  G NQI    P+ NLT  T L
Sbjct: 342 -VSSLANLTNINWLSAGHNQISDLTPLANLTRITQL 376

>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria Monocytogenes Str. 4b F2365 At 1.91 A Resolution Length = 347

Iteration: 1
 Score = 60.1 bits (144), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 117/236 (49%), Gaps = 28/236 (11%)
Query: 455 LTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPL---WLYSQKHLQFLYL 511
           LT L +  ++GN++T     D  P   LV L   N Y+G+        L +  +L+ LYL
Sbjct: 65  LTNLEYLNLNGNQIT-----DISPLSNLVKL--TNLYIGTNKITDISALQNLTNLRELYL 117
Query: 512 VNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLI 571
              +ISDI P+  L   ++   L+LG N     +  L+  TGL  L+V  + +    P+ 
Sbjct: 118 NEDNISDISPLANL---TKXYSLNLGANHNLSDLSPLSNXTGLNYLTVTESKVKDVTPI- 173
Query: 572 SSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCW--MSYQNLKT 629
            +NL       +L+S S++      I+   SL +L     Y+N ++ D     +   L +
Sbjct: 174 -ANLT------DLYSLSLNYNQIEDISPLASLTSLHYFTAYVN-QITDITPVANXTRLNS 225
Query: 630 LKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEF 685
           LK+ NNK T   P  + +L+ L WL +G N++S   + ++K+ T L+ L+VG N+ 
Sbjct: 226 LKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKXLNVGSNQI 277

>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 131/537 (24%), Positives = 211/537 (39%), Gaps = 91/537 (16%)
Query: 319 TIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFS 378
           TID EA  NL ++  LDL  +  I    P +   L +L  L L    LS  + +      
Sbjct: 63  TIDKEAFRNLPNLRILDLG-SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLK-----D 116
Query: 379 GCVSN--GLESLDLRSDSIYG-HLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLS--TL 433
           G   N   L  LDL  + I   +L    G+  ++ ++DF++N I  +    L  L   TL
Sbjct: 117 GYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTL 176
Query: 434 RVLRINDNKLNGTLSAI------HFANLTKLSWFRVDGNKLTLGVKHDW---IPPFQLVA 484
               +  N L   +S         F N+  L    V GN  T+ +  ++   I   Q  +
Sbjct: 177 SFFSLAANSLYSRVSVDWGKCMNPFRNMV-LEILDVSGNGWTVDITGNFSNAISKSQAFS 235
Query: 485 LGLRNCYVGSRFPLW-LYSQKHLQFLYLVNSSISD-------IFPI--RFLKSASQLKFL 534
           L L +  +G+ F    +       F  L  SS+         +F +  R  ++   LK L
Sbjct: 236 LILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVL 295
Query: 535 DLGQNQIHGPIPNLTEFTGL-----------LILSVYSNNMSGPLPLISSNLVFLDLSNN 583
           +L  N+I+        F GL           L+  +YS+N  G LP ++    ++DL  N
Sbjct: 296 NLAYNKINKIADE--AFYGLDNLQVLNLSYNLLGELYSSNFYG-LPKVA----YIDLQKN 348
Query: 584 ---LFSGSISPFLCYRINETKSLNALQLNDNYLNG-----ELPDCWMSYQNLKTLKLSNN 635
              +       FL       + L  L L DN L        +PD ++S   L TL   N 
Sbjct: 349 HIAIIQDQTFKFL-------EKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKIN- 400
Query: 636 KFTGNLPYSMGSLTSLVWLHLGENRLSG-NILVSLKNCTALESLDVGENEFVGNIPTWIG 694
             T NL            +HL ENRL   +IL  L     L+ L + +N F         
Sbjct: 401 -LTANL------------IHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP 447
Query: 695 ERFSRMVVLILRSNKFHGPLPTGLC-----DLAFLQILDIADNNLSGAIPNCINNLTGM- 748
                +  L L  N       T LC      L+ LQ+L +  N L+   P   ++LT + 
Sbjct: 448 SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALR 507
Query: 749 -VTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNF 804
            ++  S   +V  +  LP ++ ++ + +  +++        D+   + ++DI+ N F
Sbjct: 508 GLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPN-----PDVFVSLSVLDITHNKF 559

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 90/192 (46%), Gaps = 27/192 (14%)
Query: 143 FFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHL 202
               + NL  L  +  +I  + P  LG L+NL  L L+ N L    +   L+ L+ L  L
Sbjct: 190 VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL---KDIGTLASLTNLTDL 244
Query: 203 DLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKW 262
           DL +  +S     L   + L  L EL+L   Q+ + S LA    ++LT L+L++NQ +  
Sbjct: 245 DLANNQISN----LAPLSGLTKLTELKLGANQISNISPLA--GLTALTNLELNENQLED- 297
Query: 263 FIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDS 322
                   PI     NL +L +L L  N+ +   P  +     L+ L  SNN +    D 
Sbjct: 298 ------ISPI----SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVS---DV 342
Query: 323 EALGNLTSISWL 334
            +L NLT+I+WL
Sbjct: 343 SSLANLTNINWL 354

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 105/411 (25%), Positives = 162/411 (39%), Gaps = 96/411 (23%)
Query: 390 LRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSA 449
           L++D +     D +    N+  ++F+NN +  + P  L  L+ L  + +N+N++      
Sbjct: 46  LQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPL 103
Query: 450 IHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFL 509
            +  NLT L+ F    N++T     D  P        L+N               +L  L
Sbjct: 104 ANLTNLTGLTLFN---NQIT-----DIDP--------LKNL-------------TNLNRL 134
Query: 510 YLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLP 569
            L +++ISDI  +  L S  QL F     NQ+    P L   T L  L + SN +S    
Sbjct: 135 ELSSNTISDISALSGLTSLQQLSF---SSNQVTDLKP-LANLTTLERLDISSNKVSDISV 190
Query: 570 LIS-SNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLK 628
           L   +NL  L  +NN  S  I+P       +  SLN  QL D            S  NL 
Sbjct: 191 LAKLTNLESLIATNNQISD-ITPLGILTNLDELSLNGNQLKD-------IGTLASLTNLT 242
Query: 629 TLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGN 688
            L L+NN+ +   P S   LT L  L LG N++S   +  L   TAL +L++ EN+    
Sbjct: 243 DLDLANNQISNLAPLS--GLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDI 298
Query: 689 IP-------TWIGERF------------SRMVVLILRSNKF------------------H 711
            P       T++   F            +++  L   +NK                   H
Sbjct: 299 SPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSSLANLTNINWLSAGH 358
Query: 712 GPLP--TGLCDLAFLQILDIADNNLSGA---------IPNCINNLTGMVTA 751
             +   T L +L  +  L + D   + A         IPN + N+TG + A
Sbjct: 359 NQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIA 409

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 90/192 (46%), Gaps = 27/192 (14%)
Query: 143 FFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHL 202
               + NL  L  +  +I  + P  LG L+NL  L L+ N L    +   L+ L+ L  L
Sbjct: 189 VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL---KDIGTLASLTNLTDL 243
Query: 203 DLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKW 262
           DL +  +S     L   + L  L EL+L   Q+ + S LA    ++LT L+L++NQ +  
Sbjct: 244 DLANNQISN----LAPLSGLTKLTELKLGANQISNISPLA--GLTALTNLELNENQLED- 296
Query: 263 FIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDS 322
                   PI     NL +L +L L  N+ +   P  +     L+ L  SNN +    D 
Sbjct: 297 ------ISPI----SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVS---DV 341
Query: 323 EALGNLTSISWL 334
            +L NLT+I+WL
Sbjct: 342 SSLANLTNINWL 353

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 90/192 (46%), Gaps = 27/192 (14%)
Query: 143 FFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHL 202
               + NL  L  +  +I  + P  LG L+NL  L L+ N L    +   L+ L+ L  L
Sbjct: 193 VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL---KDIGTLASLTNLTDL 247
Query: 203 DLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKW 262
           DL +  +S     L   + L  L EL+L   Q+ + S LA    ++LT L+L++NQ +  
Sbjct: 248 DLANNQISN----LAPLSGLTKLTELKLGANQISNISPLA--GLTALTNLELNENQLED- 300
Query: 263 FIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDS 322
                   PI     NL +L +L L  N+ +   P  +     L+ L  +NN +    D 
Sbjct: 301 ------ISPI----SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVS---DV 345
Query: 323 EALGNLTSISWL 334
            +L NLT+I+WL
Sbjct: 346 SSLANLTNINWL 357

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 96/351 (27%), Positives = 144/351 (41%), Gaps = 47/351 (13%)
Query: 403 LGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFR 462
           L    N+  L   NN I  + P  L  L+ L  L ++ N ++   +     +L +LS+  
Sbjct: 107 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSF-- 162
Query: 463 VDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQ-KHLQFLYLVNSSISDIFP 521
             GN++T     D  P   L  L   +        + + ++  +L+ L   N+ ISDI P
Sbjct: 163 --GNQVT-----DLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP 215
Query: 522 IRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLIS-SNLVFLDL 580
           +  L   + L  L L  NQ+   I  L   T L  L + +N +S   PL   + L  L L
Sbjct: 216 LGIL---TNLDELSLNGNQLKD-IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 271
Query: 581 SNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGN 640
             N  S +ISP          +L  L+LN+N L    P    + +NL  L L  N  +  
Sbjct: 272 GANQIS-NISPLAGLT-----ALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI 323
Query: 641 LPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRM 700
            P S  SLT L  L    N++S   + SL N T +  L  G N+     P     R +++
Sbjct: 324 SPVS--SLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTPLANLTRITQL 379
Query: 701 VVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTA 751
                           GL D A+         N+S  IPN + N+TG + A
Sbjct: 380 ----------------GLNDQAWTNAPVNYKANVS--IPNTVKNVTGALIA 412

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 108/230 (46%), Gaps = 26/230 (11%)
Query: 144 FGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLD 203
           F  + NL  L++S  +I  ++ +   +L NL+ L++  N L+Y+ +  + SGL+ LE L 
Sbjct: 100 FTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAF-SGLNSLEQLT 158
Query: 204 LRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWF 263
           L   NL+      +  + L  L+ LRL +  ++     +      L VL++S   +    
Sbjct: 159 LEKCNLTSIPTEAL--SHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM 216
Query: 264 IPSWVFGPIPRGLQNLTSLRHLGLDSNHFN-SSIPNWLYR-FIHLEYLSLSNNSLQGTID 321
            P+ ++G       NLTS     L   H N +++P    R  ++L +L+LS N +  TI+
Sbjct: 217 TPNCLYG------LNLTS-----LSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI-STIE 264
Query: 322 SEALGNLTSISWLDLSLNMGIEGRI----PRSMASLCNLKSLNLRGVHLS 367
              L  L  +  + L     + G++    P +   L  L+ LN+ G  L+
Sbjct: 265 GSMLHELLRLQEIQL-----VGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309

>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish Tlr5 In Complex With Salmonella Flagellin Length = 455

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 102/265 (38%), Gaps = 33/265 (12%)
Query: 133 NDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQF--LDLSSNYLLYVDNF 190
           N+ + IQ   FF +M     L+L+  ++  +    L N     F  L LSS  L  ++ +
Sbjct: 139 NNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEY 198
Query: 191 W--WLSGLSFLEHLDLRSVNLS---------KAFDWLMVTNKLPSLVELRLAN--CQLHH 237
           W  W    +  ++  + +++LS         K F   +   K+ SL+     N      H
Sbjct: 199 WLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH 258
Query: 238 FSLLATANF-------SSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSN 290
            +     NF       S +   DLS          S +F  +     + T L  L L  N
Sbjct: 259 TNFKDPDNFTFKGLEASGVKTCDLS---------KSKIFALLKSVFSHFTDLEQLTLAQN 309
Query: 291 HFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSM 350
             N    N  +   HL  L+LS N L G+IDS    NL  +  LDLS N  I     +S 
Sbjct: 310 EINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNH-IRALGDQSF 367
Query: 351 ASLCNLKSLNLRGVHLSQEISEILD 375
             L NLK L L    L      I D
Sbjct: 368 LGLPNLKELALDTNQLKSVPDGIFD 392

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 89/192 (46%), Gaps = 27/192 (14%)
Query: 143 FFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHL 202
               + NL  L  +  +I  + P  LG L+NL  L L+ N L    +   L+ L+ L  L
Sbjct: 194 VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL---KDIGTLASLTNLTDL 248
Query: 203 DLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKW 262
           DL +  +S     L   + L  L EL+L   Q+ + S LA    ++LT L+L++NQ +  
Sbjct: 249 DLANNQISN----LAPLSGLTKLTELKLGANQISNISPLA--GLTALTNLELNENQLED- 301
Query: 263 FIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDS 322
                   PI     NL +L +L L  N+ +   P  +     L+ L   NN +    D 
Sbjct: 302 ------ISPI----SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS---DV 346
Query: 323 EALGNLTSISWL 334
            +L NLT+I+WL
Sbjct: 347 SSLANLTNINWL 358

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 89/192 (46%), Gaps = 27/192 (14%)
Query: 143 FFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHL 202
               + NL  L  +  +I  + P  LG L+NL  L L+ N L    +   L+ L+ L  L
Sbjct: 189 VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL---KDIGTLASLTNLTDL 243
Query: 203 DLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKW 262
           DL +  +S     L   + L  L EL+L   Q+ + S LA    ++LT L+L++NQ +  
Sbjct: 244 DLANNQISN----LAPLSGLTKLTELKLGANQISNISPLA--GLTALTNLELNENQLED- 296
Query: 263 FIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDS 322
                   PI     NL +L +L L  N+ +   P  +     L+ L   NN +    D 
Sbjct: 297 ------ISPI----SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS---DV 341
Query: 323 EALGNLTSISWL 334
            +L NLT+I+WL
Sbjct: 342 SSLANLTNINWL 353

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 89/192 (46%), Gaps = 27/192 (14%)
Query: 143 FFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHL 202
               + NL  L  +  +I  + P  LG L+NL  L L+ N L    +   L+ L+ L  L
Sbjct: 190 VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL---KDIGTLASLTNLTDL 244
Query: 203 DLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKW 262
           DL +  +S     L   + L  L EL+L   Q+ + S LA    ++LT L+L++NQ +  
Sbjct: 245 DLANNQISN----LAPLSGLTKLTELKLGANQISNISPLA--GLTALTNLELNENQLED- 297
Query: 263 FIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDS 322
                   PI     NL +L +L L  N+ +   P  +     L+ L   NN +    D 
Sbjct: 298 ------ISPI----SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS---DV 342
Query: 323 EALGNLTSISWL 334
            +L NLT+I+WL
Sbjct: 343 SSLANLTNINWL 354

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 83/180 (46%), Gaps = 22/180 (12%)
Query: 136 QGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSG 195
           QGIQ       + N+RYL L   ++  +    L  L+NL +L L+ N L  + N  +   
Sbjct: 57  QGIQY------LPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVF-DK 107
Query: 196 LSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLS 255
           L+ L+ L L    L    D   V +KL +L  L LA+ QL           ++LT LDLS
Sbjct: 108 LTNLKELVLVENQLQSLPDG--VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLS 165
Query: 256 DNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLY-RFIHLEYLSLSNN 314
            NQ     +P  VF         LT L+ L L  N    S+P+ ++ R   L+Y+ L +N
Sbjct: 166 YNQLQS--LPEGVF-------DKLTQLKDLRLYQNQL-KSVPDGVFDRLTSLQYIWLHDN 215

>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex Length = 603

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 141/348 (40%), Gaps = 53/348 (15%)
Query: 150 LRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNL 209
           +  LNL   R   +        + LQ LDL++ +L  + +   + GL+ L+ L L SVN 
Sbjct: 253 VESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKGLPS--GMKGLNLLKKLVL-SVN- 308
Query: 210 SKAFDWL--MVTNKLPSLVELRL-ANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPS 266
              FD L  +     PSL  L +  N +  H  +       +L  LDLS N  +     S
Sbjct: 309 --HFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCS 366
Query: 267 WVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALG 326
                    L+NL+ L+ L L  N               LE L L+   L          
Sbjct: 367 L-------QLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQ 419
Query: 327 NLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVH----------LSQEIS--EIL 374
           NL  +  L+L+    ++      +A L  L+ LNL+G H          L Q +   E+L
Sbjct: 420 NLHFLQVLNLTYCF-LDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVL 478
Query: 375 DIFSGCVSNGLESLDLRSDSIYGHLT--------------DQLGQFKNIVTLDFANNSIV 420
            I S C   GL S+D ++    G ++              D L   K I  L+ A NSI 
Sbjct: 479 -ILSSC---GLLSIDQQAFHSLGKMSHVDLSHNSLTCDSIDSLSHLKGIY-LNLAANSIN 533
Query: 421 GLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKL 468
            + P  L  LS    + ++ N L+ T S IHF     L+W++ + +KL
Sbjct: 534 IISPRLLPILSQQSTINLSHNPLDCTCSNIHF-----LTWYKENLHKL 576

>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex Length = 612

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 141/345 (40%), Gaps = 59/345 (17%)
Query: 144 FGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLD 203
           F     ++ L+L+   + G+ P  +  +++L+ L L++N     D    ++  SF    D
Sbjct: 273 FRCFTRVQELDLTAAHLNGL-PSGIEGMNSLKKLVLNANSF---DQLCQINAASFPSLRD 328
Query: 204 LR-SVNLSKAFDWLMVTNKLPSLVELRLA----------NCQLHHFSLLATANFSSLTVL 252
           L    N+ K         KL +L +L L+          N QL +   L   N S    L
Sbjct: 329 LYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPL 388
Query: 253 DLSDNQF---------DKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRF 303
            L D  F         D  F    V  P     QNL  LR L L     ++S  + L   
Sbjct: 389 GLEDQAFKECPQLELLDVAFTHLHVKAP-HSPFQNLHLLRVLNLSHCLLDTSNQHLLAGL 447
Query: 304 IHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRG 363
             L +L+L  NS Q            SIS  +L   + + G +   + S CNL S++ + 
Sbjct: 448 QDLRHLNLQGNSFQDG----------SISKTNL---LQMVGSLEILILSSCNLLSIDQQA 494
Query: 364 VHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLI 423
            H  + ++                LDL  +S+ G   D L   K +  L+ A+N+I  + 
Sbjct: 495 FHGLRNVNH---------------LDLSHNSLTGDSMDALSHLKGLY-LNMASNNIRIIP 538
Query: 424 PESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKL 468
           P  L  LS   ++ ++ N L+ T S IHF     ++W++ + +KL
Sbjct: 539 PHLLPALSQQSIINLSHNPLDCTCSNIHF-----ITWYKENLHKL 578

>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Human Alpha-thrombin Length = 290

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 64/142 (45%), Gaps = 17/142 (11%)
Query: 176 FLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQL 235
            L LS N LLY  +   L   + L  L+L    L+K    L V   LP L  L L++ QL
Sbjct: 35  ILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTK----LQVDGTLPVLGTLDLSHNQL 89
Query: 236 HHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRG-LQNLTSLRHLGLDSNHFNS 294
               LL      +LTVLD+S N+             +P G L+ L  L+ L L  N   +
Sbjct: 90  QSLPLLGQT-LPALTVLDVSFNRLTS----------LPLGALRGLGELQELYLKGNELKT 138
Query: 295 SIPNWLYRFIHLEYLSLSNNSL 316
             P  L     LE LSL+NN+L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNL 160

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	979
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	0.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-84
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-80
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-71
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-55
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-52
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-26
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-72
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-70
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-69
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-44
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-30
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-27
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-25
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-69
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-68
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-51
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-47
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-69
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-50
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-39
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-39
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-35
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-34
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-63
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-60
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-57
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-45
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-44
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-40
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-61
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-53
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-51
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-39
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-37
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-35
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-24
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-60
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-51
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-50
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-34
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-48
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-45
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-43
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-31
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-46
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-44
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-40
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-34
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-33
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-30
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-43
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-42
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-41
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-39
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-32
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-27
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-25
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-42
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-40
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-39
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-36
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-35
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-34
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-33
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-29
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-38
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-36
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-35
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-33
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-33
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-32
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-27
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-34
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-34
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-18
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-33
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-32
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-28
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-21
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-33
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-30
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-30
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-29
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-25
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-31
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-28
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-28
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-27
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-24
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-18
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-30
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-29
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-28
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-28
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-29
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-27
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-23
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-20
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-29
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-27
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-29
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-22
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-28
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-27
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-27
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-27
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-23
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-27
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-19
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-19
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-17
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-26
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-24
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-25
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-21
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-21
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-19
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-17
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-16
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-24
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-22
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-21
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-23
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-23
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-22
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-21
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-20
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-19
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-19
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-20
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-18
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-18
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-18
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-19
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-19
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-19
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-18
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-17
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-17
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-17
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-17
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-16
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-15
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-14
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-14
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-14
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-14
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-13
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-12
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-10
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-08
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	5e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	7e-09
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-08
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-07
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	8e-07
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	7e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	7e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	6e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	6e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	4e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	5e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	7e-05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	8e-05
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  562 bits (1452), Expect = 0.0
 Identities = 216/902 (23%), Positives = 328/902 (36%), Gaps = 186/902 (20%)

Query: 39  GCLGSEKEALLSFKRDLKDPSNRLASWSGNGDCCAWAGVFCDNITGHVLHLDLRNPFNYH 98
             L  E   L+SFK  L D  N L  WS N + C + GV C +    V  +DL +     
Sbjct: 8   QSLYREIHQLISFKDVLPDK-NLLPDWSSNKNPCTFDGVTCRD--DKVTSIDLSS----- 59

Query: 99  KESEYEAIRRTALVGKINPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRT 158
                           ++ SLL L  L  L LS +   G  +   F    +L  L+LSR 
Sbjct: 60  -------KPLNVGFSAVSSSLLSLTGLESLFLSNSHING-SVSG-FKCSASLTSLDLSRN 110

Query: 159 RIGGMIP--HHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAF-DW 215
            + G +     LG+ S L+FL++SSN L +         L+ LE LDL + ++S A    
Sbjct: 111 SLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVG 170

Query: 216 LMVTNKLPSLVELRLANCQLH-HFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPR 274
            ++++    L  L ++  ++     +   +   +L  LD+S N F            IP 
Sbjct: 171 WVLSDGCGELKHLAISGNKISGDVDV---SRCVNLEFLDVSSNNF---------STGIP- 217

Query: 275 GLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWL 334
            L + ++L+HL +  N  +      +     L+ L++S+N   G I       L S+ +L
Sbjct: 218 FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYL 274

Query: 335 DLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDS 394
            L+ N    G IP  ++                                           
Sbjct: 275 SLAENK-FTGEIPDFLS------------------------------------------- 290

Query: 395 IYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFAN 454
                    G    +  LD + N   G +P   G  S L  L ++ N  +G L       
Sbjct: 291 ---------GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK 341

Query: 455 LTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNS 514
           +                                                  L+ L L  +
Sbjct: 342 MRG------------------------------------------------LKVLDLSFN 353

Query: 515 SISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSN 574
             S   P      ++ L  LDL  N   GPI                           + 
Sbjct: 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPIL------------------PNLCQNPKNT 395

Query: 575 LVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSN 634
           L  L L NN F+G I P L         L +L L+ NYL+G +P    S   L+ LKL  
Sbjct: 396 LQELYLQNNGFTGKIPPTLS----NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 451

Query: 635 NKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIG 694
           N   G +P  +  + +L  L L  N L+G I   L NCT L  + +  N   G IP WIG
Sbjct: 452 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 511

Query: 695 ERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSF 754
            R   + +L L +N F G +P  L D   L  LD+  N  +G IP  +   +G + A   
Sbjct: 512 -RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFI 570

Query: 755 TRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTN 814
                 Y+               +  +G   +  + L+     +I+   + G       N
Sbjct: 571 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN 630

Query: 815 LKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNN 874
             ++  L+ SYN  +G IP+ IG M  L  ++   N +SG IP+ +  L  LN L+LS+N
Sbjct: 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 690

Query: 875 NLTGKIPSS------------------------TQLQSFDVSSFAGND-LCGAPLPKNCT 909
            L G+IP +                         Q ++F  + F  N  LCG PLP+   
Sbjct: 691 KLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDP 750

Query: 910 EN 911
            N
Sbjct: 751 SN 752

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  284 bits (729), Expect = 5e-84
 Identities = 135/792 (17%), Positives = 249/792 (31%), Gaps = 156/792 (19%)

Query: 125 LSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYL 184
               D S       Q+P    +  N+  LNL+  ++  +   +    S L  LD+  N  
Sbjct: 6   HEVADCSHLKLT--QVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-- 59

Query: 185 LYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATA 244
                   L                           KLP L  L L + +L   S    A
Sbjct: 60  ----TISKLEPELC---------------------QKLPMLKVLNLQHNELSQLSDKTFA 94

Query: 245 NFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFI 304
             ++LT L L  N                       +L  L L  N  +S+      +  
Sbjct: 95  FCTNLTELHLMSNSIQ---------KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLE 145

Query: 305 HLEYLSLSNNSLQGTIDSE-ALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRG 363
           +L+ L LSNN +Q     E  +   +S+  L+LS N  I+   P    ++  L  L L  
Sbjct: 146 NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ-IKEFSPGCFHAIGRLFGLFLNN 204

Query: 364 VHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLG--QFKNIVTLDFANNSIVG 421
           V L   ++E   +     +  + +L L +  +           ++ N+  LD + N++  
Sbjct: 205 VQLGPSLTE--KLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV 262

Query: 422 LIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQ 481
           +  +S   L  L    +  N +   L +     L  + +                     
Sbjct: 263 VGNDSFAWLPQLEYFFLEYNNIQH-LFSHSLHGLFNVRY--------------------- 300

Query: 482 LVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQI 541
                             L  ++      +  +S+  I    F +    L+ L++  N I
Sbjct: 301 ------------------LNLKRSFTKQSISLASLPKIDDFSF-QWLKCLEHLNMEDNDI 341

Query: 542 HGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETK 601
            G   N+  FTGL                   NL +L LSN+  S        +      
Sbjct: 342 PGIKSNM--FTGL------------------INLKYLSLSNSFTSLRTLTNETFVSLAHS 381

Query: 602 SLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSM-GSLTSLVWLHLGENR 660
            L+ L L  N ++    D +    +L+ L L  N+    L       L ++  ++L  N+
Sbjct: 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 441

Query: 661 LSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHG--PLPTGL 718
                  S     +L+ L                          LR          P+  
Sbjct: 442 YLQLTRNSFALVPSLQRLM-------------------------LRRVALKNVDSSPSPF 476

Query: 719 CDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASV 778
             L  L ILD+++NN++    + +  L  +           + L L       L      
Sbjct: 477 QPLRNLTILDLSNNNIANINDDMLEGLEKL-----------EILDL---QHNNLARLWKH 522

Query: 779 VSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGV 838
            + G  + +   L+ + ++++  N F         +L  L+ ++   N+           
Sbjct: 523 ANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNN 582

Query: 839 MRSLESIDFSANQLSGEIPESMS-SLTFLNHLNLSNNNLTGKIPSSTQLQSF------DV 891
             SL+S++   N ++    +    +   L  L++  N       S     ++      ++
Sbjct: 583 QVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNI 642

Query: 892 SSFAGNDLCGAP 903
              + + LC  P
Sbjct: 643 PELSSHYLCNTP 654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  273 bits (701), Expect = 3e-80
 Identities = 131/647 (20%), Positives = 208/647 (32%), Gaps = 68/647 (10%)

Query: 115 INPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNL 174
              +      L+ LD+ FN    +  P     +  L+ LNL    +  +        +NL
Sbjct: 41  PAANFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNL 99

Query: 175 QFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQ 234
             L L SN +  + N         L  LDL    LS          +L +L EL L+N +
Sbjct: 100 TELHLMSNSIQKIKNNP-FVKQKNLITLDLSHNGLSSTKL--GTQVQLENLQELLLSNNK 156

Query: 235 LHHFS--LLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHF 292
           +       L     SSL  L+LS NQ              P     +  L  L L++   
Sbjct: 157 IQALKSEELDIFANSSLKKLELSSNQIK---------EFSPGCFHAIGRLFGLFLNNVQL 207

Query: 293 NSSIPNWLYRFI---HLEYLSLSNNSLQGTIDSEALGNL--TSISWLDLSLNMGIEGRIP 347
             S+   L   +    +  LSLSN+ L     +     L  T+++ LDLS N  +     
Sbjct: 208 GPSLTEKLCLELANTSIRNLSLSNSQLST-TSNTTFLGLKWTNLTMLDLSYN-NLNVVGN 265

Query: 348 RSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFK 407
            S A L  L+   L   ++    S       G  +  +  L+L+                
Sbjct: 266 DSFAWLPQLEYFFLEYNNIQHLFS---HSLHGLFN--VRYLNLKR--------------- 305

Query: 408 NIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNK 467
           +      +  S+  +   S   L  L  L + DN + G + +  F  L  L +  +  + 
Sbjct: 306 SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNSF 364

Query: 468 LTLGVKHDWI----PPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIR 523
            +L    +          L  L L    +            HL+ L L  + I      +
Sbjct: 365 TSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 424

Query: 524 FLKSASQLKFLDLGQNQIHGPIPN-LTEFTGLLILSVYSNNMSGPLPLIS-----SNLVF 577
             +    +  + L  N+      N       L  L +    +       S      NL  
Sbjct: 425 EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI 484

Query: 578 LDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLN--------GELPDCWMSYQNLKT 629
           LDLSNN  +      L       + L  L L  N L         G          +L  
Sbjct: 485 LDLSNNNIANINDDMLE----GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI 540

Query: 630 LKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNI 689
           L L +N F          L  L  + LG N L+        N  +L+SL++ +N      
Sbjct: 541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600

Query: 690 PTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSG 736
               G  F  +  L +R N F     +      F+  ++    N+  
Sbjct: 601 KKVFGPAFRNLTELDMRFNPFDCTCESI---AWFVNWINETHTNIPE 644

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  249 bits (639), Expect = 1e-71
 Identities = 126/676 (18%), Positives = 225/676 (33%), Gaps = 117/676 (17%)

Query: 248 SLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLE 307
           S  V D S  +  +          +P  L   T++  L L  N           R+  L 
Sbjct: 5   SHEVADCSHLKLTQ----------VPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLT 52

Query: 308 YLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLS 367
            L +  N++   ++ E    L  +  L+L  N  +     ++ A   NL  L+L    + 
Sbjct: 53  SLDVGFNTISK-LEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNSIQ 110

Query: 368 QEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESL 427
           +  +   + F    +  L +LDL  + +         Q +N+  L  +NN I  L  E L
Sbjct: 111 KIKN---NPFVKQKN--LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEEL 165

Query: 428 G--QLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVAL 485
                S+L+ L ++ N++    S   F  + +L    ++  +L   +             
Sbjct: 166 DIFANSSLKKLELSSNQIKE-FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELAN--- 221

Query: 486 GLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLK-SASQLKFLDLGQNQIHGP 544
                               ++ L L NS +S      FL    + L  LDL  N ++  
Sbjct: 222 ------------------TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263

Query: 545 IPN-LTEFTGLLILSVYSNNMSGPLPLI---SSNLVFLDLSNNLFSGSISPFLCYRINE- 599
             +       L    +  NN+            N+ +L+L  +    SIS     +I++ 
Sbjct: 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323

Query: 600 ----TKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTG----NLPYSMGSLTSL 651
                K L  L + DN + G   + +    NLK L LSN+  +     N  +   + + L
Sbjct: 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPL 383

Query: 652 VWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFH 711
             L+L +N++S     +      LE LD+G NE    +          +  + L  NK+ 
Sbjct: 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 443

Query: 712 GPLPTGLCDLAFLQILDIADNNLSG--AIPNCINNLTGMVTACSFTRSVQQYLPLPIDVG 769
                    +  LQ L +    L    + P+    L                        
Sbjct: 444 QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR----------------------- 480

Query: 770 VILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFT 829
                                 NL  ++D+S NN +      +  L+ L+ L+  +N+  
Sbjct: 481 ----------------------NL-TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 517

Query: 830 --------GRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIP 881
                   G     +  +  L  ++  +N       E    L  L  ++L  NNL     
Sbjct: 518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA 577

Query: 882 SS----TQLQSFDVSS 893
           S       L+S ++  
Sbjct: 578 SVFNNQVSLKSLNLQK 593

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  204 bits (521), Expect = 1e-55
 Identities = 96/526 (18%), Positives = 183/526 (34%), Gaps = 49/526 (9%)

Query: 111 LVGKINPSLLDLKHLSYLDLSFNDFQGIQIPRF-FGSMGNLRYLNLSRTRIGGMIPHHLG 169
           L      + + L++L  L LS N  Q ++       +  +L+ L LS  +I    P    
Sbjct: 133 LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFH 192

Query: 170 NLSNLQFLDLSSNYLLYV--DNFWWLSGLSFLEHLDLRSVNLSK----AFDWLMVTN--- 220
            +  L  L L++  L     +        + + +L L +  LS      F  L  TN   
Sbjct: 193 AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTM 252

Query: 221 -----------------KLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWF 263
                             LP L    L    + H    +     ++  L+L  +   +  
Sbjct: 253 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI 312

Query: 264 IPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQ-GTIDS 322
             + +        Q L  L HL ++ N       N     I+L+YLSLSN+     T+ +
Sbjct: 313 SLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTN 372

Query: 323 EALGNL--TSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGC 380
           E   +L  + +  L+L+ N  I      + + L +L+ L+L    + QE++     + G 
Sbjct: 373 ETFVSLAHSPLHILNLTKNK-ISKIESDAFSWLGHLEVLDLGLNEIGQELTG--QEWRGL 429

Query: 381 VSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSI--VGLIPESLGQLSTLRVLRI 438
            +  +  + L  +       +      ++  L     ++  V   P     L  L +L +
Sbjct: 430 EN--IFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL 487

Query: 439 NDNKLNGTLSAIHFANLTKLSWFRVDGNKLT-LGVKHDWIPPF-------QLVALGLRNC 490
           ++N +   ++      L KL    +  N L  L    +   P         L  L L + 
Sbjct: 488 SNNNIAN-INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN 546

Query: 491 YVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNL-- 548
                          L+ + L  ++++ +       +   LK L+L +N I      +  
Sbjct: 547 GFDEIPVEVFKDLFELKIIDLGLNNLNTLPA-SVFNNQVSLKSLNLQKNLITSVEKKVFG 605

Query: 549 TEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLC 594
             F  L  L +  N        I+  + +++ ++       S +LC
Sbjct: 606 PAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLC 651

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  195 bits (498), Expect = 1e-52
 Identities = 98/555 (17%), Positives = 180/555 (32%), Gaps = 84/555 (15%)

Query: 354 CNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLD 413
            + +  +   + L+Q   ++           +  L+L  + +         ++  + +LD
Sbjct: 4   VSHEVADCSHLKLTQVPDDLP--------TNITVLNLTHNQLRRLPAANFTRYSQLTSLD 55

Query: 414 FANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVK 473
              N+I  L PE   +L  L+VL +  N+L+  LS   FA  T L+   +  N +     
Sbjct: 56  VGFNTISKLEPELCQKLPMLKVLNLQHNELSQ-LSDKTFAFCTNLTELHLMSNSIQ---- 110

Query: 474 HDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKF 533
              I     V                    K+L  L L ++ +S    +        L+ 
Sbjct: 111 --KIKNNPFVKQ------------------KNLITLDLSHNGLSST-KLGTQVQLENLQE 149

Query: 534 LDLGQNQIHGPIPNLTEF---TGLLILSVYSNNMSGPLPLI---SSNLVFLDLSNNLFSG 587
           L L  N+I        +    + L  L + SN +    P        L  L L+N     
Sbjct: 150 LLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGP 209

Query: 588 SISPFLCYRINETKSLNALQLNDNYLNGELPD--CWMSYQNLKTLKLSNNKFTGNLPYSM 645
           S++  LC  +    S+  L L+++ L+         + + NL  L LS N        S 
Sbjct: 210 SLTEKLCLELA-NTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF 268

Query: 646 GSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLIL 705
             L  L +  L  N +      SL     +  L++  +                     +
Sbjct: 269 AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS----------------FTKQSI 312

Query: 706 RSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLP 765
                          L  L+ L++ DN++ G   N    L  +    S + S      L 
Sbjct: 313 SLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYL-SLSNSFTSLRTLT 371

Query: 766 IDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSY 825
            +  V L                   + + ++++++N  S       + L  L+ L+   
Sbjct: 372 NETFVSL-----------------AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGL 414

Query: 826 NSFTGRIP-ESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTG--KIPS 882
           N     +  +    + ++  I  S N+       S + +  L  L L    L      PS
Sbjct: 415 NEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPS 474

Query: 883 S----TQLQSFDVSS 893
                  L   D+S+
Sbjct: 475 PFQPLRNLTILDLSN 489

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  113 bits (286), Expect = 4e-26
 Identities = 51/305 (16%), Positives = 93/305 (30%), Gaps = 61/305 (20%)

Query: 600 TKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGEN 659
           T S      +   L  ++PD   +  N+  L L++N+       +    + L  L +G N
Sbjct: 3   TVSHEVADCSHLKLT-QVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN 59

Query: 660 RLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLC 719
            +S       +    L+ L++  NE             + +  L L SN           
Sbjct: 60  TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAF-CTNLTELHLMSNSIQKIKNNPFV 118

Query: 720 DLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVV 779
               L  LD++ N LS         L  +                               
Sbjct: 119 KQKNLITLDLSHNGLSSTKLGTQVQLENL------------------------------- 147

Query: 780 SKGEMVDYEDILNLVRMIDISRNNFSG--KIPLEVTNLKALQSLNFSYNSFTGRIPESIG 837
                          + + +S N         L++    +L+ L  S N      P    
Sbjct: 148 ---------------QELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFH 192

Query: 838 VMRSLESIDFSANQLSGEIPESMS---SLTFLNHLNLSNNNLTGKIPSS------TQLQS 888
            +  L  +  +  QL   + E +    + T + +L+LSN+ L+    ++      T L  
Sbjct: 193 AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTM 252

Query: 889 FDVSS 893
            D+S 
Sbjct: 253 LDLSY 257

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  250 bits (640), Expect = 2e-72
 Identities = 126/600 (21%), Positives = 206/600 (34%), Gaps = 82/600 (13%)

Query: 124 HLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNY 183
               LDLSFN  + +     F S   L+ L+LSR  I  +      +LS+L  L L+ N 
Sbjct: 29  STKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 184 LLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLAT 243
           +  +      SGLS L+ L     NL+   ++ +    L +L EL +A+  +  F L   
Sbjct: 88  IQSLALGA-FSGLSSLQKLVAVETNLASLENFPI--GHLKTLKELNVAHNLIQSFKLPEY 144

Query: 244 -ANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLR----HLGLDSNHFNSSIPN 298
            +N ++L  LDLS N+                 L+ L  +      L L  N  N   P 
Sbjct: 145 FSNLTNLEHLDLSSNKI---------QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 195

Query: 299 WLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLN-----MGIEGRIPRSMASL 353
              + I L  L+L NN     +    +  L  +    L L        +E     ++  L
Sbjct: 196 AF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254

Query: 354 CNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLD 413
           CNL     R  +L   + +I+D+F+   +  + S  L S +I                L+
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTN--VSSFSLVSVTIERV--KDFSYNFGWQHLE 310

Query: 414 FANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVK 473
             N          L    +L+ L    NK     S     +L  L +  +  N L+    
Sbjct: 311 LVNCKFGQFPTLKL---KSLKRLTFTSNKGGNAFS---EVDLPSLEFLDLSRNGLSFK-- 362

Query: 474 HDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKF 533
                                      +    L++L L  + +  +          QL+ 
Sbjct: 363 --------------------GCCSQSDFGTTSLKYLDLSFNGVITMSSN--FLGLEQLEH 400

Query: 534 LDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFL 593
           LD   + +       + F  L                   NL++LD+S+     + +   
Sbjct: 401 LDFQHSNLKQMSE-FSVFLSL------------------RNLIYLDISHTHTRVAFNGIF 441

Query: 594 CYRINETKSLNALQLNDNYLNGEL-PDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLV 652
                   SL  L++  N       PD +   +NL  L LS  +     P +  SL+SL 
Sbjct: 442 NG----LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497

Query: 653 WLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHG 712
            L++  N          K   +L+ LD   N  + +    +    S +  L L  N F  
Sbjct: 498 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 557

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  243 bits (623), Expect = 5e-70
 Identities = 114/680 (16%), Positives = 211/680 (31%), Gaps = 117/680 (17%)

Query: 223 PSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSL 282
            S   L L+   L H    +  +F  L VLDLS  +                  Q+L+ L
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ---------TIEDGAYQSLSHL 78

Query: 283 RHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGI 342
             L L  N   S           L+ L     +L   +++  +G+L ++  L+++ N+  
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQ 137

Query: 343 EGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQ 402
             ++P   ++L NL+ L+L    +       L          L  + L +          
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR--------VLHQMPLLN---------- 179

Query: 403 LGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFR 462
                  ++LD + N +  + P +  ++  L  L + +N  +  +       L  L   R
Sbjct: 180 -------LSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHR 231

Query: 463 VDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPI 522
           +   +       +      L   GL N  +          +  L +L      I D+F  
Sbjct: 232 LVLGEFRNEGNLEKFDKSAL--EGLCNLTI---------EEFRLAYLDYYLDDIIDLF-- 278

Query: 523 RFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSN 582
                 + +    L    I   + + +   G   L + +        L   +L  L  ++
Sbjct: 279 ---NCLTNVSSFSLVSVTIER-VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTS 334

Query: 583 NLFSGSISPFLCYRINETKSLNALQLNDNYLN--GELPDCWMSYQNLKTLKLSNNKFTGN 640
           N    + S        +  SL  L L+ N L+  G          +LK L LS N     
Sbjct: 335 NKGGNAFS------EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT- 387

Query: 641 LPYSMGSLTSLVWLHLGENRLSGNILVS-LKNCTALESLDVGENEFVGNIPTWIGERFSR 699
           +  +   L  L  L    + L      S   +   L  LD+                 S 
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG-LSS 446

Query: 700 MVVLILRSNKFHGPLPTG-LCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSV 758
           + VL +  N F          +L  L  LD++   L    P   N+L+ +          
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL---------- 496

Query: 759 QQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKAL 818
                                               +++++S NNF          L +L
Sbjct: 497 ------------------------------------QVLNMSHNNFFSLDTFPYKCLNSL 520

Query: 819 QSLNFSYNSFTGRIPESIG-VMRSLESIDFSANQLSGEIPES--MSSLTFLNHLNLSNNN 875
           Q L++S N       + +     SL  ++ + N  +        +  +     L +    
Sbjct: 521 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVER 580

Query: 876 LTGKIPSS---TQLQSFDVS 892
           +    PS      + S +++
Sbjct: 581 MECATPSDKQGMPVLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  240 bits (615), Expect = 7e-69
 Identities = 123/622 (19%), Positives = 210/622 (33%), Gaps = 86/622 (13%)

Query: 111 LVGKINPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGN 170
           L    + S      L  LDLS  + Q I     + S+ +L  L L+   I  +       
Sbjct: 40  LRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98

Query: 171 LSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRL 230
           LS+LQ L      L  ++NF  +  L  L+ L+                          +
Sbjct: 99  LSSLQKLVAVETNLASLENF-PIGHLKTLKELN--------------------------V 131

Query: 231 ANCQLHHFSLLAT-ANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLR----HL 285
           A+  +  F L    +N ++L  LDLS N+                 L+ L  +      L
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKI---------QSIYCTDLRVLHQMPLLNLSL 182

Query: 286 GLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLN-----M 340
            L  N  N   P    + I L  L+L NN     +    +  L  +    L L       
Sbjct: 183 DLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241

Query: 341 GIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLT 400
            +E     ++  LCNL     R  +L   + +I+D+F+   +  + S  L S +I     
Sbjct: 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN--VSSFSLVSVTIERV-- 297

Query: 401 DQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSW 460
                      L+  N             L +L+ L    NK     S     +L  L +
Sbjct: 298 KDFSYNFGWQHLELVNCKFGQFPTLK---LKSLKRLTFTSNKGGNAFS---EVDLPSLEF 351

Query: 461 FRVDGNKLT-LGVKHDWIPPF-QLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISD 518
             +  N L+  G           L  L L    V +    +L  ++ L+ L   +S++  
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ-LEHLDFQHSNLKQ 410

Query: 519 IFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFL 578
           +       S   L +LD+           +  F GL                  S+L  L
Sbjct: 411 MSEFSVFLSLRNLIYLDISHTHTRVAFNGI--FNGL------------------SSLEVL 450

Query: 579 DLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFT 638
            ++ N F  +  P +     E ++L  L L+   L    P  + S  +L+ L +S+N F 
Sbjct: 451 KMAGNSFQENFLPDI---FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 507

Query: 639 GNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNC-TALESLDVGENEFVGNIP-TWIGER 696
               +    L SL  L    N +  +    L++  ++L  L++ +N+F          + 
Sbjct: 508 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQW 567

Query: 697 FSRMVVLILRSNKFHGPLPTGL 718
                 L++   +     P+  
Sbjct: 568 IKDQRQLLVEVERMECATPSDK 589

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  170 bits (432), Expect = 1e-44
 Identities = 84/510 (16%), Positives = 156/510 (30%), Gaps = 79/510 (15%)

Query: 406 FKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDG 465
             +   LD + N +  L   S      L+VL ++  ++        + +L+ LS   + G
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA-YQSLSHLSTLILTG 85

Query: 466 NKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFL 525
           N +       +     L  L      + S     +   K L+ L + ++ I       + 
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 526 KSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSG-------PLPLISSNLVFL 578
            + + L+ LDL  N+I             + L   S ++S        P       L  L
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKL 205

Query: 579 DLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSY-QNLKTLKLSNNK- 636
            L NN  S ++       +   +    L L +    G L     S  + L  L +   + 
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHR-LVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264

Query: 637 -----FTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPT 691
                +  ++      LT++    L    +    +         + L++   +F G  PT
Sbjct: 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKF-GQFPT 321

Query: 692 WIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLS--GAIPNCINNLTGMV 749
              +   R     L      G       DL  L+ LD++ N LS  G         T   
Sbjct: 322 LKLKSLKR-----LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT--- 373

Query: 750 TACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIP 809
                                                     +L + +D+S N     + 
Sbjct: 374 ------------------------------------------SL-KYLDLSFNGVIT-MS 389

Query: 810 LEVTNLKALQSLNFSYNSFTGRIPESI-GVMRSLESIDFSANQLSGEIPESMSSLTFLNH 868
                L+ L+ L+F +++       S+   +R+L  +D S            + L+ L  
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449

Query: 869 LNLSNNNLTGKIPSS-----TQLQSFDVSS 893
           L ++ N+               L   D+S 
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  125 bits (317), Expect = 4e-30
 Identities = 74/404 (18%), Positives = 121/404 (29%), Gaps = 52/404 (12%)

Query: 529 SQLKFLDLGQNQIHGPIPN-LTEFTGLLILSVYSNNMSGPLPLI---SSNLVFLDLSNNL 584
              K LDL  N +          F  L +L +    +           S+L  L L+ N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 585 FSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTG-NLPY 643
                        +   SL  L   +  L           + LK L +++N      LP 
Sbjct: 88  IQSLALGAF----SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 644 SMGSLTSLVWLHLGENRLSGNILVSLKNCTALE----SLDVGENEFVGNIPTWIGERFSR 699
              +LT+L  L L  N++       L+    +     SLD+  N      P    E   R
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE--IR 201

Query: 700 MVVLILRSNKFHGPLPTGLC-DLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSV 758
           +  L LR+N     +       LA L++  +              + + +   C+ T   
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261

Query: 759 QQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKAL 818
            +   L                  +++D  + L  V    +             +     
Sbjct: 262 FRLAYLDY-------------YLDDIIDLFNCLTNVSSFSLVSVTIERVKDF--SYNFGW 306

Query: 819 QSLNFSYNSFT-------------------GRIPESIGVMRSLESIDFSANQLS--GEIP 857
           Q L      F                    G    S   + SLE +D S N LS  G   
Sbjct: 307 QHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCS 366

Query: 858 ESMSSLTFLNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLCG 901
           +S    T L +L+LS N +     +   L+  +   F  ++L  
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ 410

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  117 bits (295), Expect = 2e-27
 Identities = 51/353 (14%), Positives = 95/353 (26%), Gaps = 67/353 (18%)

Query: 571 ISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTL 630
           +  +   LDLS N      S            L  L L+   +       + S  +L TL
Sbjct: 26  LPFSTKNLDLSFNPLRHLGSYSF----FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTL 81

Query: 631 KLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIP 690
            L+ N        +   L+SL  L   E  L+      + +   L+ L+V  N       
Sbjct: 82  ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 141

Query: 691 TWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQI----LDIADNNLSGAIPNCINNLT 746
                  + +  L L SNK      T L  L  + +    LD++ N ++   P     + 
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 201

Query: 747 GMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSG 806
                                                          +  + +  N  S 
Sbjct: 202 -----------------------------------------------LHKLTLRNNFDSL 214

Query: 807 KIPLEV-TNLKALQSLNFSYNSFTGRI---PESIGVMRSLESIDFSANQLS------GEI 856
            +       L  L+        F             +  L ++     +L+       +I
Sbjct: 215 NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDI 274

Query: 857 PESMSSLTFLNHLNLSNNNLTGKIPSS--TQLQSFDVSSFAGNDLCGAPLPKN 907
            +  + LT ++  +L +  +      S     Q  ++ +          L   
Sbjct: 275 IDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSL 327

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  110 bits (278), Expect = 3e-25
 Identities = 53/260 (20%), Positives = 97/260 (37%), Gaps = 44/260 (16%)

Query: 115 INPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNL 174
           ++ + L L+ L +LD   ++ + +     F S+ NL YL++S T            LS+L
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447

Query: 175 QFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQ 234
           + L ++ N           + L  L  LDL                            CQ
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLS--------------------------QCQ 481

Query: 235 LHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNS 294
           L   S  A  + SSL VL++S N F                 + L SL+ L    NH  +
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMSHNNFF---------SLDTFPYKCLNSLQVLDYSLNHIMT 532

Query: 295 SIPNWLYRFI-HLEYLSLSNNSLQGTIDSEAL-GNLTSISWLDLSLNMGIEGRIPRSMAS 352
           S    L  F   L +L+L+ N    T + ++    +     L + +   +E   P     
Sbjct: 533 SKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVE-RMECATPSD--- 588

Query: 353 LCNLKSLNLRGVHLSQEISE 372
               + + +  ++++ ++++
Sbjct: 589 ---KQGMPVLSLNITCQMNK 605

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 77.8 bits (192), Expect = 9e-15
 Identities = 20/123 (16%), Positives = 41/123 (33%), Gaps = 7/123 (5%)

Query: 788 EDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDF 847
           +++    + +D+S N           +   LQ L+ S          +   +  L ++  
Sbjct: 24  DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 83

Query: 848 SANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSS----TQLQSFDVSSFAGNDLCGAP 903
           + N +      + S L+ L  L     NL             L+  +V+    N +    
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA---HNLIQSFK 140

Query: 904 LPK 906
           LP+
Sbjct: 141 LPE 143

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  242 bits (620), Expect = 3e-69
 Identities = 101/634 (15%), Positives = 200/634 (31%), Gaps = 97/634 (15%)

Query: 134 DFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWW- 192
           D  G Q      S G +  L+L      G +P  +G L+ L+ L L S+     +  +  
Sbjct: 67  DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGP 126

Query: 193 --LSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLT 250
             +S     E      ++  K F           L++  + +         ++      T
Sbjct: 127 KGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDT 186

Query: 251 VLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLS 310
            +    N              + + +  LT LR   + ++ F +            E  +
Sbjct: 187 QIGQLSNN----------ITFVSKAVMRLTKLRQFYMGNSPFVAENI-----CEAWENEN 231

Query: 311 LSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEI 370
                   T D +   NL  ++ +++  N     ++P  + +L  ++ +N+         
Sbjct: 232 SEYAQQYKTEDLK-WDNLKDLTDVEVY-NCPNLTKLPTFLKALPEMQLINVA-------- 281

Query: 371 SEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGL-IPESLGQ 429
                       N   S +   D             + I  +    N++    +  SL +
Sbjct: 282 -----------CNRGISGEQLKDD--WQALADAPVGEKIQIIYIGYNNLKTFPVETSLQK 328

Query: 430 LSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRN 489
           +  L +L    N+L G L A  F +  KL+   +  N++T       IP           
Sbjct: 329 MKKLGMLECLYNQLEGKLPA--FGSEIKLASLNLAYNQIT------EIPANFCGFT---- 376

Query: 490 CYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPN-- 547
                         + ++ L   ++ +  I  I   KS S +  +D   N+I        
Sbjct: 377 --------------EQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF 422

Query: 548 ------LTEFTGLLILSVYSNNMSGPLPLI---SSNLVFLDLSNNLFSGSISPFLCYRIN 598
                   +   +  +++ +N +S     +    S L  ++L  N+ +  I        N
Sbjct: 423 DPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE-IPKNSLKDEN 481

Query: 599 ET----KSLNALQLNDNYLNGELPDCWMSY-QNLKTLKLSNNKFTGNLPYSMGSLTSLVW 653
           E       L ++ L  N L     D   +    L  + LS N F+   P    + ++L  
Sbjct: 482 ENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKG 540

Query: 654 LHLGE------NRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRS 707
             +        NR        +  C +L  L +G N+    +   I      + VL ++ 
Sbjct: 541 FGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI---TPNISVLDIKD 596

Query: 708 NKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNC 741
           N       + +C      +  +  +     I  C
Sbjct: 597 NPNISIDLSYVCPYIEAGMYMLFYDKTQD-IRGC 629

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  238 bits (609), Expect = 8e-68
 Identities = 87/615 (14%), Positives = 174/615 (28%), Gaps = 95/615 (15%)

Query: 305 HLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGV 364
            +  LSL      G +  +A+G LT +  L L  +             +    S   +  
Sbjct: 82  RVTGLSLEGFGASGRV-PDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQK 140

Query: 365 HLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIP 424
                    +D       + L    + SD     +            +   +N+I   + 
Sbjct: 141 MRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VS 199

Query: 425 ESLGQLSTLRVLRINDNKLNGT-----LSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPP 479
           +++ +L+ LR   + ++              +     +     +  + L           
Sbjct: 200 KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLK---------- 249

Query: 480 FQLVALGLRNCYVGSRFPLWLYSQKHLQFLYL-------VNSSISDIFPIRFLKSASQLK 532
             L  + + NC   ++ P +L +   +Q + +             D   +       +++
Sbjct: 250 -DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ 308

Query: 533 FLDLGQNQI-HGPIPN-LTEFTGLLILSVYSNNMSGPLPLIS--SNLVFLDLSNNLFSGS 588
            + +G N +   P+   L +   L +L    N + G LP       L  L+L+ N  +  
Sbjct: 309 IIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITE- 367

Query: 589 ISPFLCYRINETKSLNALQLNDNYLNGELPD--CWMSYQNLKTLKLSNNKFTG------- 639
           I    C     T+ +  L    N L   +P+     S   +  +  S N+          
Sbjct: 368 IPANFC---GFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD 423

Query: 640 NLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVG---NIPTWIGER 696
            L  +     ++  ++L  N++S          + L S+++  N       N      E 
Sbjct: 424 PLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENEN 483

Query: 697 FSRM---VVLILRSNKFHG-PLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTAC 752
           F        + LR NK            L +L  +D++ N+ S   P    N + +    
Sbjct: 484 FKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKG-- 540

Query: 753 SFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEV 812
                                                   +    D   N    + P  +
Sbjct: 541 --------------------------------------FGIRNQRDAQGNRTLREWPEGI 562

Query: 813 TNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLS 872
           T   +L  L    N     + E I    ++  +D   N         +          L 
Sbjct: 563 TLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLF 619

Query: 873 NNNLTGKIPSSTQLQ 887
            +     I     L 
Sbjct: 620 YDKTQ-DIRGCDALD 633

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  191 bits (487), Expect = 2e-51
 Identities = 71/521 (13%), Positives = 158/521 (30%), Gaps = 80/521 (15%)

Query: 402 QLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWF 461
            L     +  L        G +P+++GQL+ L VL +  +             ++     
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANM-S 134

Query: 462 RVDGNKLTLGVKHDWIPPF------QLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSS 515
                K+ +  +  ++          L+   + +                   +  ++++
Sbjct: 135 DEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNN 194

Query: 516 ISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLIS-SN 574
           I+ +     +   ++L+   +G +          E              +  L   +  +
Sbjct: 195 ITFVSK--AVMRLTKLRQFYMGNSPFVAENI--CEAWENENSEYAQQYKTEDLKWDNLKD 250

Query: 575 LVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNG--ELPDCWMS------YQN 626
           L  +++ N      +  FL         +  + +  N      +L D W +       + 
Sbjct: 251 LTDVEVYNCPNLTKLPTFLK----ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK 306

Query: 627 LKTLKLSNNKFT-GNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEF 685
           ++ + +  N      +  S+  +  L  L    N+L G  L +  +   L SL++  N+ 
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQI 365

Query: 686 VGNIPTWIGERFSRMVVLILRSNKFHG-PLPTGLCDLAFLQILDIADNNLSGAIPNCINN 744
              IP        ++  L    NK    P       ++ +  +D + N +        + 
Sbjct: 366 TE-IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP 424

Query: 745 LTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNF 804
           L                                              N+   I++S N  
Sbjct: 425 LDPTPFKGI--------------------------------------NVSS-INLSNNQI 445

Query: 805 SGKIPLEVTNLKALQSLNFSYNSFTG-------RIPESIGVMRSLESIDFSANQLSGEIP 857
           S       +    L S+N   N  T           E+      L SID   N+L+    
Sbjct: 446 SKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSD 505

Query: 858 E-SMSSLTFLNHLNLSNNNLTGKIPSS----TQLQSFDVSS 893
           +   ++L +L  ++LS N+ +   P+     + L+ F + +
Sbjct: 506 DFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRN 545

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  177 bits (452), Expect = 6e-47
 Identities = 66/520 (12%), Positives = 139/520 (26%), Gaps = 88/520 (16%)

Query: 111 LVGKINPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGN 170
               I  S       + +    N+   +   +    +  LR   +  +            
Sbjct: 171 QQKSIKKSSRITLKDTQIGQLSNNITFV--SKAVMRLTKLRQFYMGNSPFVAENICEAWE 228

Query: 171 LSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAF-DWLMVTNKLPSLVELR 229
             N ++        L          L  L  +++ +         +L     LP +  + 
Sbjct: 229 NENSEYAQQYKTEDL------KWDNLKDLTDVEVYNCPNLTKLPTFL---KALPEMQLIN 279

Query: 230 LANCQLHHF--------SLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTS 281
           +A  +            +L        + ++ +  N             P+   LQ +  
Sbjct: 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT--------FPVETSLQKMKK 331

Query: 282 LRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMG 341
           L  L    N     +P      I L  L+L+ N +   I +   G    +  L  + N  
Sbjct: 332 LGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKL 389

Query: 342 IEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNG--LESLDLRSDSIYGHL 399
                     S+  + +++     +     +  D        G  + S++L ++ I    
Sbjct: 390 KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFP 449

Query: 400 TDQLGQFKNIVTLDFANNSIVGL-------IPESLGQLSTLRVLRINDNKLNGTLSAIHF 452
            +       + +++   N +  +         E+      L  + +  NKL         
Sbjct: 450 KELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRA 509

Query: 453 ANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLV 512
             L  L    +  N  +                         +FP    +   L+   + 
Sbjct: 510 TTLPYLVGIDLSYNSFS-------------------------KFPTQPLNSSTLKGFGIR 544

Query: 513 NSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPN-LTEFTGLLILSVYSNNMSGPLPLI 571
           N                     D   N+     P  +T    L  L + SN++      I
Sbjct: 545 NQ-------------------RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI 585

Query: 572 SSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDN 611
           + N+  LD+ +N        ++C  I          L  +
Sbjct: 586 TPNISVLDIKDNPNISIDLSYVCPYIE----AGMYMLFYD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.7 bits (101), Expect = 5e-04
 Identities = 21/152 (13%), Positives = 44/152 (28%), Gaps = 14/152 (9%)

Query: 767 DVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYN 826
            V + L   A  +      DY  +  +   ++    +  G       N     + N   +
Sbjct: 17  IVPIKLSRTAEYIK-----DYLALKEIWDALNGKNWSQQGFGTQPGANW----NFNKELD 67

Query: 827 SFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNL-----SNNNLTGKIP 881
            +  +   S+     +  +       SG +P+++  LT L  L L       N       
Sbjct: 68  MWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPK 127

Query: 882 SSTQLQSFDVSSFAGNDLCGAPLPKNCTENVS 913
             +   S +             +  +  E+ S
Sbjct: 128 GISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  232 bits (593), Expect = 4e-69
 Identities = 91/346 (26%), Positives = 142/346 (41%), Gaps = 59/346 (17%)

Query: 569 PLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGE--LPDCWMSYQN 626
             +SS L   D  N  + G +    C    +T  +N L L+   L     +P    +   
Sbjct: 22  TTLSSWLPTTDCCNRTWLGVL----CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPY 77

Query: 627 LKTLKLSN-NKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEF 685
           L  L +   N   G +P ++  LT L +L++    +SG I   L     L +LD   N  
Sbjct: 78  LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL 137

Query: 686 VGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFL-QILDIADNNLSGAIPNCINN 744
            G +P  I      +V +    N+  G +P      + L   + I+ N L+G IP    N
Sbjct: 138 SGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN 196

Query: 745 LTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNF 804
           L                                              NL   +D+SRN  
Sbjct: 197 L----------------------------------------------NLAF-VDLSRNML 209

Query: 805 SGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLT 864
            G   +   + K  Q ++ + NS    +   +G+ ++L  +D   N++ G +P+ ++ L 
Sbjct: 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268

Query: 865 FLNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGND-LCGAPLPKNCT 909
           FL+ LN+S NNL G+IP    LQ FDVS++A N  LCG+PLP  CT
Sbjct: 269 FLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-ACT 313

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  180 bits (458), Expect = 1e-50
 Identities = 85/344 (24%), Positives = 127/344 (36%), Gaps = 75/344 (21%)

Query: 40  CLGSEKEALLSFKRDLKDPSNRLASWSGNGDCC--AWAGVFCDNIT--GHVLHLDLRNPF 95
           C   +K+ALL  K+DL +P+  L+SW    DCC   W GV CD  T    V +LDL    
Sbjct: 3   CNPQDKQALLQIKKDLGNPTT-LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG-- 59

Query: 96  NYHKESEYEAIRRTALVGKINPSLLDLKHLSYLDLS-FNDFQGIQIPRFFGSMGNLRYLN 154
                              I  SL +L +L++L +   N+  G  IP     +  L YL 
Sbjct: 60  -----------LNLPKPYPIPSSLANLPYLNFLYIGGINNLVG-PIPPAIAKLTQLHYLY 107

Query: 155 LSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSG--------LSFLEHLDLRS 206
           ++ T + G IP  L  +  L  LD S N          LSG        L  L  +    
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNA---------LSGTLPPSISSLPNLVGITFDG 158

Query: 207 VNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPS 266
                        N++   +     +                 T + +S N+        
Sbjct: 159 -------------NRISGAIPDSYGSFS------------KLFTSMTISRNRLT------ 187

Query: 267 WVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALG 326
              G IP    NL +L  + L  N              + + + L+ NSL   +    +G
Sbjct: 188 ---GKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK--VG 241

Query: 327 NLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEI 370
              +++ LDL  N  I G +P+ +  L  L SLN+   +L  EI
Sbjct: 242 LSKNLNGLDLRNNR-IYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  148 bits (377), Expect = 1e-39
 Identities = 74/338 (21%), Positives = 128/338 (37%), Gaps = 62/338 (18%)

Query: 411 TLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTL 470
           T D  N + +G++ ++  Q   +  L ++   L                           
Sbjct: 30  TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYP---------------------- 67

Query: 471 GVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNS-SISDIFPIRFLKSAS 529
                 IP        L N               +L FLY+    ++    P   +   +
Sbjct: 68  ------IPSS------LANL-------------PYLNFLYIGGINNLVGPIP-PAIAKLT 101

Query: 530 QLKFLDLGQNQIHGPIP-NLTEFTGLLILSVYSNNMSGPLPL-IS--SNLVFLDLSNNLF 585
           QL +L +    + G IP  L++   L+ L    N +SG LP  IS   NLV +    N  
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161

Query: 586 SGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSM 645
           SG+I        + +K   ++ ++ N L G++P    +  NL  + LS N   G+     
Sbjct: 162 SGAIPDSYG---SFSKLFTSMTISRNRLTGKIPPT-FANLNLAFVDLSRNMLEGDASVLF 217

Query: 646 GSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLIL 705
           GS  +   +HL +N L+ ++   +     L  LD+  N   G +P  +  +   +  L +
Sbjct: 218 GSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLT-QLKFLHSLNV 275

Query: 706 RSNKFHGPLPTGLCDLAFLQILDIADNN-LSGA-IPNC 741
             N   G +P G  +L    +   A+N  L G+ +P C
Sbjct: 276 SFNNLCGEIPQGG-NLQRFDVSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  148 bits (376), Expect = 1e-39
 Identities = 70/307 (22%), Positives = 116/307 (37%), Gaps = 62/307 (20%)

Query: 529 SQLKFLDLGQNQIHG--PIPN-LTEFTGLLILSVYS-NNMSGPLPL-IS--SNLVFLDLS 581
            ++  LDL    +    PIP+ L     L  L +   NN+ GP+P  I+  + L +L ++
Sbjct: 50  YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT 109

Query: 582 NNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNL 641
           +   SG+I  FL     + K+L  L  + N L+G LP    S  NL  +    N+ +G +
Sbjct: 110 HTNVSGAIPDFLS----QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165

Query: 642 PYSMGSLTSLV-WLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRM 700
           P S GS + L   + +  NRL+G I  +  N   L  +D+  N   G+     G      
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFG-SDKNT 223

Query: 701 VVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQ 760
             + L  N     L   +     L  LD+ +N + G +P  +  L  +            
Sbjct: 224 QKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL------------ 270

Query: 761 YLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQS 820
                                               +++S NN  G+IP +  NL+    
Sbjct: 271 ----------------------------------HSLNVSFNNLCGEIP-QGGNLQRFDV 295

Query: 821 LNFSYNS 827
             ++ N 
Sbjct: 296 SAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  134 bits (340), Expect = 8e-35
 Identities = 66/237 (27%), Positives = 95/237 (40%), Gaps = 58/237 (24%)

Query: 668 SLKNCTALES----LDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHG--PLPTGLCDL 721
            L N T L S     D     ++G +      +  R+  L L         P+P+ L +L
Sbjct: 17  DLGNPTTLSSWLPTTDCCNRTWLGVLCDTDT-QTYRVNNLDLSGLNLPKPYPIPSSLANL 75

Query: 722 AFLQILDIAD-NNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVS 780
            +L  L I   NNL G IP  I  LT                                  
Sbjct: 76  PYLNFLYIGGINNLVGPIPPAIAKLT---------------------------------- 101

Query: 781 KGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMR 840
                       L   + I+  N SG IP  ++ +K L +L+FSYN+ +G +P SI  + 
Sbjct: 102 -----------QL-HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149

Query: 841 SLESIDFSANQLSGEIPESMSSLTFL-NHLNLSNNNLTGKIPSS---TQLQSFDVSS 893
           +L  I F  N++SG IP+S  S + L   + +S N LTGKIP +     L   D+S 
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSR 206

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  131 bits (332), Expect = 8e-34
 Identities = 58/356 (16%), Positives = 106/356 (29%), Gaps = 96/356 (26%)

Query: 219 TNKLPSLVELRLANCQLHHFSLLATA--NFSSLTVLDLSD-NQFDKWFIPSWVFGPIPRG 275
             +   +  L L+   L     + ++  N   L  L +   N            GPIP  
Sbjct: 46  DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL---------VGPIPPA 96

Query: 276 LQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLD 335
           +  LT L +L +   + + +IP++L +   L  L  S N+L GT+    + +L ++  + 
Sbjct: 97  IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS-ISSLPNLVGIT 155

Query: 336 LSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSI 395
              N  I G IP    S  +   L                           S+ +  + +
Sbjct: 156 FDGNR-ISGAIP---DSYGSFSKL-------------------------FTSMTISRNRL 186

Query: 396 YGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANL 455
            G +        N+  +D + N + G      G     + + +  N L   L  +     
Sbjct: 187 TGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKV--GLS 243

Query: 456 TKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSS 515
             L+   +  N++  G     +P                                     
Sbjct: 244 KNLNGLDLRNNRIY-GT----LPQ------------------------------------ 262

Query: 516 ISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNM--SGPLP 569
                    L     L  L++  N + G IP         + +  +N      PLP
Sbjct: 263 --------GLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP 310

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 62.9 bits (154), Expect = 1e-10
 Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 14/106 (13%)

Query: 807 KIPLEVTNLKALQS----LNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGE--IPESM 860
           +I  ++ N   L S     +    ++ G + ++      + ++D S   L     IP S+
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 861 SSLTFLNHLNLSN-NNLTGKIPSS----TQLQSFDVSSFAGNDLCG 901
           ++L +LN L +   NNL G IP +    TQL    ++     ++ G
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT---HTNVSG 115

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  224 bits (574), Expect = 3e-63
 Identities = 109/572 (19%), Positives = 192/572 (33%), Gaps = 46/572 (8%)

Query: 122 LKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSS 181
                 L+ SFN    IQ    F  + NL +L+L+R +I  +      +   L  L L++
Sbjct: 32  PNSTECLEFSFNVLPTIQ-NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90

Query: 182 NYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLL 241
           N L+++     LSG   L+HL      +S      +  +   +L  L L +  +    L 
Sbjct: 91  NPLIFMAETA-LSGPKALKHLFFIQTGISSIDFIPL--HNQKTLESLYLGSNHISSIKLP 147

Query: 242 ATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLY 301
                  L VLD  +N      +           LQ  T+L  L L+ N   + I    +
Sbjct: 148 KGFPTEKLKVLDFQNNAIHY--LSKEDMS----SLQQATNL-SLNLNGNDI-AGIEPGAF 199

Query: 302 RFIHLEYLSLSNNSLQGTIDSEALGN-LTSISWLDLSLNMGIEGRIPRSMASLC--NLKS 358
                + L+         I      + + S+       +M  E   P     LC  +++S
Sbjct: 200 DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFE-DMDDEDISPAVFEGLCEMSVES 258

Query: 359 LNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNS 418
           +NL+  +     S   + F       L+ LDL +  +   L   L     +  L  + N 
Sbjct: 259 INLQKHYFFNISS---NTFHCFSG--LQELDLTATHL-SELPSGLVGLSTLKKLVLSANK 312

Query: 419 IVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLT-LGVKHDWI 477
              L   S     +L  L I  N     L      NL  L    +  + +      +  +
Sbjct: 313 FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL 372

Query: 478 PPF-QLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDL 536
                L +L L      S           L+ L L  + +         ++   LK L+L
Sbjct: 373 RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432

Query: 537 GQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYR 596
             + +      L  F GL                    L  L+L  N F    +      
Sbjct: 433 SHSLLDISSEQL--FDGL------------------PALQHLNLQGNHFPK-GNIQKTNS 471

Query: 597 INETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHL 656
           +     L  L L+   L+      + S + +  + LS+N+ T +   ++  L  +  L+L
Sbjct: 472 LQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNL 530

Query: 657 GENRLSGNILVSLKNCTALESLDVGENEFVGN 688
             N +S  +   L   +   ++++ +N     
Sbjct: 531 ASNHISIILPSLLPILSQQRTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  216 bits (551), Expect = 3e-60
 Identities = 101/625 (16%), Positives = 176/625 (28%), Gaps = 100/625 (16%)

Query: 128 LDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYV 187
            +         +IP    +  +   L  S   +  +       L NL FLDL+   + ++
Sbjct: 17  YNCENLGLN--EIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 188 DNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFS 247
                                    F           L  L L    L   +  A +   
Sbjct: 73  HE---------------------DTFQ------SQHRLDTLVLTANPLIFMAETALSGPK 105

Query: 248 SLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLE 307
           +L  L                       L N  +L  L L SNH +S      +    L+
Sbjct: 106 ALKHLFFIQTGIS---------SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLK 156

Query: 308 YLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLS 367
            L   NN++   +  E + +L   + L L+LN      I          +SLN  G   +
Sbjct: 157 VLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGG---T 212

Query: 368 QEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFK--NIVTLDFANNSIVGLIPE 425
           Q +  I           L                        ++ +++   +    +   
Sbjct: 213 QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272

Query: 426 SLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVAL 485
           +    S L+ L +    L+   S      L+ L    +  NK         +        
Sbjct: 273 TFHCFSGLQELDLTATHLSELPSG--LVGLSTLKKLVLSANKFEN------LCQISASNF 324

Query: 486 GLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPI 545
                               L  L +  ++         L++   L+ LDL  + I    
Sbjct: 325 ------------------PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD 366

Query: 546 PNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNA 605
               +   L                  S+L  L+LS N      +        E   L  
Sbjct: 367 CCNLQLRNL------------------SHLQSLNLSYNEPLSLKTEAF----KECPQLEL 404

Query: 606 LQLNDNYLNGELPD-CWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGN 664
           L L    L  +     + +   LK L LS++    +       L +L  L+L  N     
Sbjct: 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG 464

Query: 665 ILV---SLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDL 721
            +    SL+    LE L +   +               M  + L  N+        L  L
Sbjct: 465 NIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTS-LKMMNHVDLSHNRLTSSSIEALSHL 523

Query: 722 AFLQILDIADNNLSGAIPNCINNLT 746
             +  L++A N++S  +P+ +  L+
Sbjct: 524 KGIY-LNLASNHISIILPSLLPILS 547

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  208 bits (531), Expect = 1e-57
 Identities = 114/609 (18%), Positives = 203/609 (33%), Gaps = 76/609 (12%)

Query: 281 SLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNM 340
           +  +LGL      + IP  L      E L  S N L  TI +     L ++++LDL+   
Sbjct: 18  NCENLGL------NEIPGTL--PNSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQ 68

Query: 341 GIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLT 400
            I      +  S   L +L L    L           SG  +  L+ L      I     
Sbjct: 69  -IYWIHEDTFQSQHRLDTLVLTANPLIFMAETA---LSGPKA--LKHLFFIQTGISSIDF 122

Query: 401 DQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSW 460
             L   K + +L   +N I  +          L+VL   +N ++  LS    ++L + + 
Sbjct: 123 IPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATN 181

Query: 461 FRVD--GNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQK--HLQFLYLVNSSI 516
             ++  GN +  G++          +L              L +     L      +   
Sbjct: 182 LSLNLNGNDIA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDD 240

Query: 517 SDIFPIRFLK-SASQLKFLDLGQNQIHGPIPN-LTEFTGLLILSVYSNNMSGPLPLIS-- 572
            DI P  F       ++ ++L ++       N    F+GL  L + + ++S     +   
Sbjct: 241 EDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGL 300

Query: 573 SNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSY-QNLKTLK 631
           S L  L LS N F            +   SL  L +  N    EL    +   +NL+ L 
Sbjct: 301 STLKKLVLSANKFENLCQISA----SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356

Query: 632 LSNNKFT--GNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNI 689
           LS++           + +L+ L  L+L  N        + K C  LE LD+         
Sbjct: 357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKD 416

Query: 690 PTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMV 749
                +    + VL L  +            L  LQ L++  N+         N+L    
Sbjct: 417 AQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT-- 474

Query: 750 TACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIP 809
                                                    L  + ++ +S  + S    
Sbjct: 475 -----------------------------------------LGRLEILVLSFCDLSSIDQ 493

Query: 810 LEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHL 869
              T+LK +  ++ S+N  T    E++  ++ +  ++ ++N +S  +P  +  L+    +
Sbjct: 494 HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTI 552

Query: 870 NLSNNNLTG 878
           NL  N L  
Sbjct: 553 NLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  171 bits (435), Expect = 6e-45
 Identities = 95/489 (19%), Positives = 157/489 (32%), Gaps = 74/489 (15%)

Query: 111 LVGKINPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLR--YLNLSRTRIGGMIPHHL 168
           +     P     + L  LD   N    +       S+       LNL+   I G I    
Sbjct: 141 ISSIKLPKGFPTEKLKVLDFQNNAIHYLS-KEDMSSLQQATNLSLNLNGNDIAG-IEPGA 198

Query: 169 GNLSNLQFLDLSSNYLLYVDNFWWLSGLSF--LEHLDLRSVNLSKAFDWLMVTNKLPSLV 226
            + +  Q L+      L V  F  L   +   L       ++       +       S+ 
Sbjct: 199 FDSAVFQSLNFGGTQNLLV-IFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVE 257

Query: 227 ELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLG 286
            + L      + S      FS L  LDL+     +          +P GL  L++L+ L 
Sbjct: 258 SINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE----------LPSGLVGLSTLKKLV 307

Query: 287 LDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNM-GIEGR 345
           L +N F +        F  L +LS+  N+ +  + +  L NL ++  LDLS +       
Sbjct: 308 LSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDC 367

Query: 346 IPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQ 405
               + +L +L+SLNL         +   + F  C                         
Sbjct: 368 CNLQLRNLSHLQSLNLSYNEPLSLKT---EAFKEC------------------------- 399

Query: 406 FKNIVTLDFANNSIVGLIPES-LGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVD 464
              +  LD A   +     +S    L  L+VL ++ + L+   S   F  L  L    + 
Sbjct: 400 -PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI-SSEQLFDGLPALQHLNLQ 457

Query: 465 GNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRF 524
           GN      K +      L  L                    L+ L L    +S I     
Sbjct: 458 GNHFP---KGNIQKTNSLQTL------------------GRLEILVLSFCDLSSI-DQHA 495

Query: 525 LKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLP---LISSNLVFLDLS 581
             S   +  +DL  N++             + L++ SN++S  LP    I S    ++L 
Sbjct: 496 FTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLR 555

Query: 582 NNLFSGSIS 590
            N    + S
Sbjct: 556 QNPLDCTCS 564

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  170 bits (432), Expect = 1e-44
 Identities = 82/557 (14%), Positives = 164/557 (29%), Gaps = 76/557 (13%)

Query: 354 CNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLD 413
              K+ N   + L++          G + N  E L+   + +         +  N+  LD
Sbjct: 12  EVNKTYNCENLGLNE--------IPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLD 63

Query: 414 FANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVK 473
                I  +  ++      L  L +  N L   ++    +    L         ++    
Sbjct: 64  LTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF-MAETALSGPKALKHLFFIQTGISSIDF 122

Query: 474 HDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFP--IRFLKSASQL 531
                   L +L L + ++ S      +  + L+ L   N++I  +    +  L+  +  
Sbjct: 123 IPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQ-ATN 181

Query: 532 KFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSN-----LVFLDLSNNLFS 586
             L+L  N I G  P   +      L+         +     N     L      +    
Sbjct: 182 LSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDE 241

Query: 587 GSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMG 646
                          S+ ++ L  +Y      + +  +  L+ L L+    +  LP  + 
Sbjct: 242 DISPAVF--EGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLV 298

Query: 647 SLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILR 706
            L++L  L L  N+      +S  N  +L  L +  N     + T   E    +  L L 
Sbjct: 299 GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLS 358

Query: 707 SNKFH--GPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPL 764
            +           L +L+ LQ L+++ N                                
Sbjct: 359 HDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP------------------ 400

Query: 765 PIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEV-TNLKALQSLNF 823
                                       L  ++D++      K       NL  L+ LN 
Sbjct: 401 ---------------------------QL-ELLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432

Query: 824 SYNSFTGRIPESIGVMRSLESIDFSANQLSGEI---PESMSSLTFLNHLNLSNNNLTGKI 880
           S++       +    + +L+ ++   N           S+ +L  L  L LS  +L+   
Sbjct: 433 SHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID 492

Query: 881 PSS----TQLQSFDVSS 893
             +      +   D+S 
Sbjct: 493 QHAFTSLKMMNHVDLSH 509

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  157 bits (398), Expect = 3e-40
 Identities = 68/344 (19%), Positives = 113/344 (32%), Gaps = 43/344 (12%)

Query: 118 SLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFL 177
           +      L  LDL+       ++P     +  L+ L LS  +   +      N  +L  L
Sbjct: 273 TFHCFSGLQELDLTATHLS--ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHL 330

Query: 178 DLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHH 237
            +  N          L  L  L  LDL   ++  +    +    L  L  L L+  +   
Sbjct: 331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS 390

Query: 238 FSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIP 297
               A      L +LDL+  +  K       F        NL  L+ L L  +  + S  
Sbjct: 391 LKTEAFKECPQLELLDLAFTRL-KVKDAQSPFQ-------NLHLLKVLNLSHSLLDISSE 442

Query: 298 NWLYRFIHLEYLSLSNNSLQGTID--SEALGNLTSISWLDLSLNMGIEGRIPRSMASLCN 355
                   L++L+L  N         + +L  L  +  L LS    +      +  SL  
Sbjct: 443 QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKM 501

Query: 356 LKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFA 415
           +  ++L    L+    E L          L+ +                       L+ A
Sbjct: 502 MNHVDLSHNRLTSSSIEALS--------HLKGI----------------------YLNLA 531

Query: 416 NNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLS 459
           +N I  ++P  L  LS  R + +  N L+ T S I+F    K +
Sbjct: 532 SNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKEN 575

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 78.5 bits (194), Expect = 4e-15
 Identities = 35/279 (12%), Positives = 73/279 (26%), Gaps = 77/279 (27%)

Query: 626 NLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEF 685
           + + L+ S N        +   L +L +L L   ++      + ++   L++L       
Sbjct: 34  STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLV------ 87

Query: 686 VGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNL 745
                              L +N       T L     L+ L      +S      ++N 
Sbjct: 88  -------------------LTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQ 128

Query: 746 TGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFS 805
                                                          L   + +  N+ S
Sbjct: 129 K---------------------------------------------TL-ESLYLGSNHIS 142

Query: 806 GKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLE--SIDFSANQLSGEIPESMSSL 863
                +    + L+ L+F  N+      E +  ++     S++ + N ++  I       
Sbjct: 143 SIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA-GIEPGAFDS 201

Query: 864 TFLNHLNLSNNNLTGKIPSS---TQLQSFDVSSFAGNDL 899
                LN         I      + +QS  + +F   D 
Sbjct: 202 AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDD 240

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 70.4 bits (173), Expect = 1e-12
 Identities = 44/277 (15%), Positives = 66/277 (23%), Gaps = 82/277 (29%)

Query: 628 KTLKLSNNKFT---GNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENE 684
           KT    N       G LP       S   L    N L      +      L  LD     
Sbjct: 15  KTYNCENLGLNEIPGTLP------NSTECLEFSFNVLPTIQNTTFSRLINLTFLD----- 63

Query: 685 FVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINN 744
                               L   + +            L  L +  N L       ++ 
Sbjct: 64  --------------------LTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSG 103

Query: 745 LTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNF 804
                                                           L + +   +   
Sbjct: 104 PK---------------------------------------------AL-KHLFFIQTGI 117

Query: 805 SGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLT 864
           S    + + N K L+SL    N  +            L+ +DF  N +     E MSSL 
Sbjct: 118 SSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ 177

Query: 865 FLNH--LNLSNNNLTGKIPSSTQLQSFDVSSFAGNDL 899
              +  LNL+ N++ G  P +     F   +F G   
Sbjct: 178 QATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQN 214

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 57.7 bits (140), Expect = 1e-08
 Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 3/102 (2%)

Query: 109 TALVGKINPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHL 168
                +   SL  L  L  L LSF D   I     F S+  + +++LS  R+       L
Sbjct: 462 PKGNIQKTNSLQTLGRLEILVLSFCDLSSI-DQHAFTSLKMMNHVDLSHNRLTSSSIEAL 520

Query: 169 GNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLS 210
            +L  +  L+L+SN++  +     L  LS    ++LR   L 
Sbjct: 521 SHLKGIY-LNLASNHISIILP-SLLPILSQQRTINLRQNPLD 560

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  219 bits (561), Expect = 1e-61
 Identities = 111/572 (19%), Positives = 197/572 (34%), Gaps = 57/572 (9%)

Query: 124 HLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNY 183
               +DLSFN  + ++    F +   L++L+LSR  I  +       L +L  L L+ N 
Sbjct: 33  STKNIDLSFNPLKILK-SYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 184 LLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLAT 243
           +         SGL+ LE+L      L+    + +   +L +L +L +A+  +H   L A 
Sbjct: 92  IQSFSPGS-FSGLTSLENLVAVETKLASLESFPI--GQLITLKKLNVAHNFIHSCKLPAY 148

Query: 244 -ANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLT-SLRHLGLDSNHFNSSIPNWLY 301
            +N ++L  +DLS N      I         + L+        L +  N     I +  +
Sbjct: 149 FSNLTNLVHVDLSYNYIQT--ITVNDL----QFLRENPQVNLSLDMSLNPI-DFIQDQAF 201

Query: 302 RFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMG-----IEGRIPRSMASLCNL 356
           + I L  L+L  N     I    L NL  +    L L        +E   P  M  LC++
Sbjct: 202 QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV 261

Query: 357 KSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFAN 416
                R  + +   S+ +  F    +  + ++ L   SI     + + +     +L    
Sbjct: 262 TIDEFRLTYTND-FSDDIVKFHCLAN--VSAMSLAGVSI--KYLEDVPKHFKWQSLSIIR 316

Query: 417 NSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTL---GVK 473
             +          L  L+ L +  NK + +        L  LS+  +  N L+       
Sbjct: 317 CQLKQF---PTLDLPFLKSLTLTMNKGSISFK---KVALPSLSYLDLSRNALSFSGCCSY 370

Query: 474 HDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKF 533
            D      L  L L                + LQ L   +S++  +       S  +L +
Sbjct: 371 SDLGTN-SLRHLDLSFNGA-IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY 428

Query: 534 LDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFL 593
           LD+           +  F GL                  ++L  L ++ N F  +    +
Sbjct: 429 LDISYTNTKIDFDGI--FLGL------------------TSLNTLKMAGNSFKDNTLSNV 468

Query: 594 CYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVW 653
                 T +L  L L+   L       + +   L+ L +S+N            L SL  
Sbjct: 469 ---FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLST 525

Query: 654 LHLGENRLSGNILVSLKNCTALESLDVGENEF 685
           L    NR+  +  +      +L   ++  N  
Sbjct: 526 LDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  197 bits (502), Expect = 1e-53
 Identities = 109/640 (17%), Positives = 186/640 (29%), Gaps = 120/640 (18%)

Query: 246 FSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIH 305
            SS   +DLS N      + S+ F        N + L+ L L      +      +   H
Sbjct: 31  PSSTKNIDLSFNPLKI--LKSYSFS-------NFSELQWLDLSRCEIETIEDKAWHGLHH 81

Query: 306 LEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVH 365
           L  L L+ N +Q      +   LTS+  L       +       +  L  LK LN+    
Sbjct: 82  LSNLILTGNPIQS-FSPGSFSGLTSLENLVAVET-KLASLESFPIGQLITLKKLNVAHNF 139

Query: 366 LSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKN----IVTLDFANNSIVG 421
           +     ++   FS   +  L  +DL  + I     + L   +      ++LD + N I  
Sbjct: 140 IHS--CKLPAYFSNLTN--LVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF 195

Query: 422 LIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQ 481
           +  ++   +  L  L +  N  +  +      NL  L   R+   +              
Sbjct: 196 IQDQAFQGIK-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEF------------- 241

Query: 482 LVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQI 541
                 RN  +     +       +    L  ++      ++F    + +  + L    I
Sbjct: 242 ---KDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKF-HCLANVSAMSLAGVSI 297

Query: 542 HGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETK 601
              + ++ +      LS+    +     L    L  L L+ N  S S             
Sbjct: 298 KY-LEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVAL------P 350

Query: 602 SLNALQLNDNYLN--GELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGEN 659
           SL+ L L+ N L+  G      +   +L+ L LS N     +  +   L  L  L    +
Sbjct: 351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHS 409

Query: 660 RLSGNILVS-LKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGL 718
            L      S   +   L  LD                         +             
Sbjct: 410 TLKRVTEFSAFLSLEKLLYLD-------------------------ISYTNTKIDFDGIF 444

Query: 719 CDLAFLQILDIADNNLSGAIP-NCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKAS 777
             L  L  L +A N+       N   N T                               
Sbjct: 445 LGLTSLNTLKMAGNSFKDNTLSNVFANTT------------------------------- 473

Query: 778 VVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIG 837
                         NL   +D+S+             L  LQ LN S+N+          
Sbjct: 474 --------------NL-TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN 518

Query: 838 VMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLT 877
            + SL ++D S N++             L   NL+NN++ 
Sbjct: 519 QLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  191 bits (486), Expect = 1e-51
 Identities = 111/648 (17%), Positives = 197/648 (30%), Gaps = 118/648 (18%)

Query: 113 GKINPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLS 172
           G +NP +  + +++            ++P    S  + + ++LS   +  +  +   N S
Sbjct: 2   GSLNPCIEVVPNIT-YQCMDQKLS--KVPDDIPS--STKNIDLSFNPLKILKSYSFSNFS 56

Query: 173 NLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLAN 232
            LQ+LDLS   +  ++                      KA+        L  L  L L  
Sbjct: 57  ELQWLDLSRCEIETIE---------------------DKAWH------GLHHLSNLILTG 89

Query: 233 CQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHF 292
             +  F                                  P     LTSL +L       
Sbjct: 90  NPIQSF---------------------------------SPGSFSGLTSLENLVAVETKL 116

Query: 293 NSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMAS 352
            S     + + I L+ L++++N +          NLT++  +DLS N  I+      +  
Sbjct: 117 ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQF 175

Query: 353 LCNLK----SLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTD------- 401
           L        SL++    +     +            L  L LR +    ++         
Sbjct: 176 LRENPQVNLSLDMSLNPIDFIQDQAFQGIK------LHELTLRGNFNSSNIMKTCLQNLA 229

Query: 402 QLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGT-LSAIHFANLTKLSW 460
            L   + I+       ++    P  +  L  + +        N      + F  L  +S 
Sbjct: 230 GLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSA 289

Query: 461 FRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIF 520
             + G  +      D    F+  +L +  C +     L L     L+ L L  +  S  F
Sbjct: 290 MSLAGVSIK--YLEDVPKHFKWQSLSIIRCQLKQFPTLDL---PFLKSLTLTMNKGSISF 344

Query: 521 PIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDL 580
               L S   L +LDL +N +           G                   ++L  LDL
Sbjct: 345 KKVALPS---LSYLDLSRNALSFSGCCSYSDLGT------------------NSLRHLDL 383

Query: 581 SNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELP-DCWMSYQNLKTLKLSNNKFTG 639
           S N      + F+       + L  L    + L        ++S + L  L +S      
Sbjct: 384 SFNGAIIMSANFMG-----LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438

Query: 640 NLPYSMGSLTSLVWLHLGENRLSGNILVS-LKNCTALESLDVGENEFVGNIPTWIGERFS 698
           +       LTSL  L +  N    N L +   N T L  LD+ + +              
Sbjct: 439 DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD-TLH 497

Query: 699 RMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLT 746
           R+ +L +  N       +    L  L  LD + N +  +     +   
Sbjct: 498 RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPK 545

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  155 bits (393), Expect = 1e-39
 Identities = 68/378 (17%), Positives = 123/378 (32%), Gaps = 36/378 (9%)

Query: 114 KINPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMI------PHH 167
            I         L  L L  N      +     ++  L    L               P  
Sbjct: 195 FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSI 254

Query: 168 LGNLSNLQFLDLSSNYL-LYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLV 226
           +  L ++   +    Y   + D+      L+ +  + L  V++    D      K     
Sbjct: 255 MEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVP----KHFKWQ 310

Query: 227 ELRLANCQLHHFSLLATANFSSLTVLDLSDNQ----FDKWFIPS-----------WVFGP 271
            L +  CQL  F    T +   L  L L+ N+    F K  +PS              G 
Sbjct: 311 SLSIIRCQLKQFP---TLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGC 367

Query: 272 IPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSI 331
                    SLRHL L  N     +         L++L   +++L+   +  A  +L  +
Sbjct: 368 CSYSDLGTNSLRHLDLSFNGA-IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL 426

Query: 332 SWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLR 391
            +LD+S     +         L +L +L + G           ++F+   +  L  LDL 
Sbjct: 427 LYLDISYT-NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS--NVFANTTN--LTFLDLS 481

Query: 392 SDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIH 451
              +             +  L+ ++N+++ L      QL +L  L  + N++  T   I 
Sbjct: 482 KCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGIL 540

Query: 452 FANLTKLSWFRVDGNKLT 469
                 L++F +  N + 
Sbjct: 541 QHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  148 bits (376), Expect = 2e-37
 Identities = 79/506 (15%), Positives = 147/506 (29%), Gaps = 72/506 (14%)

Query: 406 FKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDG 465
             +   +D + N +  L   S    S L+ L ++  ++   +    +  L  LS   + G
Sbjct: 31  PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET-IEDKAWHGLHHLSNLILTG 89

Query: 466 NKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFL 525
           N +       +     L  L      + S     +     L+ L + ++ I       + 
Sbjct: 90  NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYF 149

Query: 526 KSASQLKFLDLGQNQIHGPIPNLTEF-----TGLLILSVYSNNMSG--PLPLISSNLVFL 578
            + + L  +DL  N I     N  +F        L L +  N +            L  L
Sbjct: 150 SNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHEL 209

Query: 579 DLSNNLFSGSISPFLCYRINETKSLNALQ---LNDNYLNGELPDCWMSYQNL--KTLKLS 633
            L  N  S +I       +        +     ++  L    P       ++     +L+
Sbjct: 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269

Query: 634 NNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWI 693
                 +       L ++  + L    +    L  +      +SL +   +         
Sbjct: 270 YTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQFPTLD- 326

Query: 694 GERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACS 753
                 +  L L  NK           L  L  LD++ N LS +     ++L        
Sbjct: 327 ---LPFLKSLTLTMNKGSISFK--KVALPSLSYLDLSRNALSFSGCCSYSDLG------- 374

Query: 754 FTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVT 813
                                                 N +R +D+S N     +     
Sbjct: 375 -------------------------------------TNSLRHLDLSFNGAII-MSANFM 396

Query: 814 NLKALQSLNFSYNSFTGRIPES-IGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLS 872
            L+ LQ L+F +++       S    +  L  +D S      +       LT LN L ++
Sbjct: 397 GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMA 456

Query: 873 NNNLTGKIPSS-----TQLQSFDVSS 893
            N+      S+     T L   D+S 
Sbjct: 457 GNSFKDNTLSNVFANTTNLTFLDLSK 482

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  141 bits (357), Expect = 4e-35
 Identities = 62/339 (18%), Positives = 113/339 (33%), Gaps = 30/339 (8%)

Query: 124 HLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNY 183
            +    L++ +         F  + N+  ++L+   I  +    +      Q L +    
Sbjct: 262 TIDEFRLTYTNDFSDD-IVKFHCLANVSAMSLAGVSIKYL--EDVPKHFKWQSLSIIRCQ 318

Query: 184 LLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLAT 243
           L           L FL+ L L     S +F  +     LPSL  L L+   L      + 
Sbjct: 319 LKQFPTL----DLPFLKSLTLTMNKGSISFKKV----ALPSLSYLDLSRNALSFSGCCSY 370

Query: 244 ANF--SSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLY 301
           ++   +SL  LDLS N              +      L  L+HL    +          +
Sbjct: 371 SDLGTNSLRHLDLSFNGAII----------MSANFMGLEELQHLDFQHSTLKRVTEFSAF 420

Query: 302 RFIH-LEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLN 360
             +  L YL +S  + +          LTS++ L ++ N   +  +    A+  NL  L+
Sbjct: 421 LSLEKLLYLDISYTNTK-IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLD 479

Query: 361 LRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIV 420
           L    L Q       +F       L+ L++  +++    +    Q  ++ TLD + N I 
Sbjct: 480 LSKCQLEQISW---GVFDTLHR--LQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534

Query: 421 GLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLS 459
                      +L    + +N +        F    K  
Sbjct: 535 TSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQ 573

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  106 bits (266), Expect = 8e-24
 Identities = 37/200 (18%), Positives = 68/200 (34%), Gaps = 12/200 (6%)

Query: 115 INPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNL 174
           ++ + + L+ L +LD   +  + +     F S+  L YL++S T            L++L
Sbjct: 391 MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL 450

Query: 175 QFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQ 234
             L ++ N           +  + L  LDL    L     W +    L  L  L +++  
Sbjct: 451 NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE-QISWGVFDT-LHRLQLLNMSHNN 508

Query: 235 LHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNS 294
           L            SL+ LD S N+ +                    SL    L +N    
Sbjct: 509 LLFLDSSHYNQLYSLSTLDCSFNRIE---------TSKGILQHFPKSLAFFNLTNNSVAC 559

Query: 295 SIPN-WLYRFIHLEYLSLSN 313
              +    +++  +   L N
Sbjct: 560 ICEHQKFLQWVKEQKQFLVN 579

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 93.2 bits (232), Expect = 1e-19
 Identities = 54/374 (14%), Positives = 93/374 (24%), Gaps = 65/374 (17%)

Query: 543 GPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKS 602
           G +    E    +        +S     I S+   +DLS N      S       +    
Sbjct: 2   GSLNPCIEVVPNITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSF----SNFSE 57

Query: 603 LNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLS 662
           L  L L+   +       W    +L  L L+ N      P S   LTSL  L   E +L+
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117

Query: 663 GNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLA 722
                 +     L+ L+V  N              + +V + L  N         L  L 
Sbjct: 118 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 177

Query: 723 FLQI----LDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASV 778
                   LD++ N +          +                                 
Sbjct: 178 ENPQVNLSLDMSLNPIDFIQDQAFQGIK-------------------------------- 205

Query: 779 VSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEV-TNLKALQSLNFSYNSFTGRIPESI- 836
                          +  + +  N  S  I      NL  L         F       I 
Sbjct: 206 ---------------LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF 250

Query: 837 --GVMRSLESI-----DFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSSTQLQSF 889
              +M  L  +       +      +       L  ++ ++L+  ++   +    +   +
Sbjct: 251 EPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLEDVPKHFKW 309

Query: 890 DVSSFAGNDLCGAP 903
              S     L   P
Sbjct: 310 QSLSIIRCQLKQFP 323

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 76.2 bits (188), Expect = 2e-14
 Identities = 29/150 (19%), Positives = 54/150 (36%), Gaps = 27/150 (18%)

Query: 111 LVGKINPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGN 170
                +   L L  L+ L ++ N F+   +   F +  NL +L+LS+ ++  +       
Sbjct: 436 TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT 495

Query: 171 LSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRL 230
           L  LQ L++S N LL++D+    + L  L  LD                           
Sbjct: 496 LHRLQLLNMSHNNLLFLDS-SHYNQLYSLSTLDCS------------------------- 529

Query: 231 ANCQLHHFSLLATANFSSLTVLDLSDNQFD 260
              ++     +      SL   +L++N   
Sbjct: 530 -FNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 65.1 bits (159), Expect = 8e-11
 Identities = 42/302 (13%), Positives = 76/302 (25%), Gaps = 86/302 (28%)

Query: 615 GELPDCWMSYQNLKTLKLSNNKFT---GNLPYSMGSLTSLVWLHLGENRLSGNILVSLKN 671
           G L  C     N+ T +  + K +    ++P      +S   + L  N L      S  N
Sbjct: 2   GSLNPCIEVVPNI-TYQCMDQKLSKVPDDIP------SSTKNIDLSFNPLKILKSYSFSN 54

Query: 672 CTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIAD 731
            + L+ LD                         L   +           L  L  L +  
Sbjct: 55  FSELQWLD-------------------------LSRCEIETIEDKAWHGLHHLSNLILTG 89

Query: 732 NNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDIL 791
           N +    P   + LT                                             
Sbjct: 90  NPIQSFSPGSFSGLT--------------------------------------------- 104

Query: 792 NLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTG-RIPESIGVMRSLESIDFSAN 850
           +L   +       +      +  L  L+ LN ++N     ++P     + +L  +D S N
Sbjct: 105 SL-ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163

Query: 851 QLSGEIPESMSSLTFLN----HLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLCGAPLPK 906
            +       +  L         L++S N +      + Q       +  GN      +  
Sbjct: 164 YIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKT 223

Query: 907 NC 908
             
Sbjct: 224 CL 225

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  220 bits (563), Expect = 3e-60
 Identities = 97/623 (15%), Positives = 198/623 (31%), Gaps = 91/623 (14%)

Query: 134 DFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWL 193
           D  G Q      + G +  L+L+     G +P  +G L+ L+ L   ++        +  
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368

Query: 194 SGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLD 253
             L+  +  + R   +   +  + +      L    L    ++    +        + + 
Sbjct: 369 EELT-PDMSEERKHRIRMHYKKMFLDY-DQRLNLSDLLQDAINRNPEM--KPIKKDSRIS 424

Query: 254 LSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSN 313
           L D Q       +     I + +Q LT L+ +   ++ F           +  E  +   
Sbjct: 425 LKDTQIG---NLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIA-----VDWEDANSDY 476

Query: 314 NSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEI 373
                  +     NL  ++ ++L  N     ++P  +  L  L+SLN+            
Sbjct: 477 AKQYENEELS-WSNLKDLTDVELY-NCPNMTQLPDFLYDLPELQSLNIA----------- 523

Query: 374 LDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPE-SLGQLST 432
                    N   S   +  + +  L D       I       N++       SL ++  
Sbjct: 524 --------CNRGISAA-QLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVK 574

Query: 433 LRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYV 492
           L +L    NK+   L A  F    KL+  ++D N++        IP              
Sbjct: 575 LGLLDCVHNKVR-HLEA--FGTNVKLTDLKLDYNQIE------EIPED------------ 613

Query: 493 GSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFT 552
                 +      ++ L   ++ +  I  I   KS   +  +D   N+I     N++   
Sbjct: 614 ------FCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667

Query: 553 GLL------ILSVYSNNMSGPLPLI---SSNLVFLDLSNNLFSGSISPFLCYRINET--- 600
                     +++  N +      +    S +  + LSNNL + SI        +     
Sbjct: 668 DDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKN 726

Query: 601 -KSLNALQLNDNYLNGELPDCWM--SYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLG 657
              L  + L  N L   L D +   +   L  + +S N F+   P    + + L    + 
Sbjct: 727 TYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIR 784

Query: 658 E------NRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKF- 710
                  NR+       +  C +L  L +G N+    +   +     ++ +L +  N   
Sbjct: 785 HQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL---TPQLYILDIADNPNI 840

Query: 711 HGPLPTGLCDLAFLQILDIADNN 733
              + +    +     + + D  
Sbjct: 841 SIDVTSVCPYIEAGMYVLLYDKT 863

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  193 bits (491), Expect = 6e-51
 Identities = 83/677 (12%), Positives = 175/677 (25%), Gaps = 143/677 (21%)

Query: 245 NFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFI 304
           N   +T L L+              G +P  +  LT L+ L   ++    S   +    +
Sbjct: 321 NNGRVTGLSLAGFGAK---------GRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEEL 371

Query: 305 HLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGV 364
             +      + ++       L     ++  DL  +        + +     +   + +  
Sbjct: 372 TPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIG 431

Query: 365 HLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIP 424
           +L+  I+ I           L+ +   +               +    +           
Sbjct: 432 NLTNRITFISKAIQRLTK--LQIIYFANSPFTY-----DNIAVDWEDANSDYAKQYENEE 484

Query: 425 ESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVA 484
            S   L  L  + + +      L      +L +L    +  N+                 
Sbjct: 485 LSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNIACNRGI-------SAAQLKAD 536

Query: 485 LGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGP 544
                    +R      +   +Q  Y+  +++ +      L+   +L  LD   N++   
Sbjct: 537 W--------TRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-- 586

Query: 545 IPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLN 604
             +L  F                       L  L L  N     I    C     T  + 
Sbjct: 587 --HLEAFGTN------------------VKLTDLKLDYNQIE-EIPEDFC---AFTDQVE 622

Query: 605 ALQLNDNYLNGELPDCW--MSYQNLKTLKLSNNKFTGN-----LPYSMGSLTSLVWLHLG 657
            L  + N L   +P+ +   S   + ++  S NK                  +   + L 
Sbjct: 623 GLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLS 681

Query: 658 ENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTG 717
            N +           + + ++ +  N    +IP                      P    
Sbjct: 682 YNEIQKFPTELFATGSPISTIILSNNLM-TSIPENSL-----------------KPKDGN 723

Query: 718 LCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKAS 777
             +   L  +D+  N L+                          L               
Sbjct: 724 YKNTYLLTTIDLRFNKLTS-------------------------LSDDFRAT-------- 750

Query: 778 VVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSY------NSFTGR 831
                       +  L   +D+S N FS   P +  N   L++    +      N    +
Sbjct: 751 -----------TLPYL-SNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQ 797

Query: 832 IPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLT-GKIPSSTQLQSFD 890
            P  I    SL  +   +N +  ++ E +     L  L++++N      + S        
Sbjct: 798 WPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAG 854

Query: 891 VSSFAGN---DLCGAPL 904
           +     +   D+ G   
Sbjct: 855 MYVLLYDKTQDIRGCDA 871

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  191 bits (487), Expect = 2e-50
 Identities = 81/662 (12%), Positives = 173/662 (26%), Gaps = 115/662 (17%)

Query: 265 PSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEA 324
            +W +          +   +   + + +       L     +  LSL+    +G +  +A
Sbjct: 284 KNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRV-PDA 342

Query: 325 LGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNG 384
           +G LT +  L    +             L    S   +           LD       + 
Sbjct: 343 IGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402

Query: 385 LESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLN 444
           L    +  +     +            +    N I   I +++ +L+ L+++   ++   
Sbjct: 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFT 461

Query: 445 GTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQK 504
                                                                L   + K
Sbjct: 462 YD------------------------------NIAVDWEDANSDYAKQYENEELSWSNLK 491

Query: 505 HLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNM 564
            L  + L N       P  FL    +L+ L++  N+         ++T L          
Sbjct: 492 DLTDVELYNCPNMTQLP-DFLYDLPELQSLNIACNRGISAAQLKADWTRL---------- 540

Query: 565 SGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNG--ELPDCWM 622
                     +    +  N      +      + +   L  L    N +           
Sbjct: 541 -ADDEDTGPKIQIFYMGYNNLEEFPASAS---LQKMVKLGLLDCVHNKVRHLEAFGTN-- 594

Query: 623 SYQNLKTLKLSNNKFTGNLPYSMGS-LTSLVWLHLGENRLSGN-ILVSLKNCTALESLDV 680
               L  LKL  N+    +P    +    +  L    N+L     + + K+   + S+D 
Sbjct: 595 --VKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDF 651

Query: 681 GENEFVGNIPTWIGE----RFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSG 736
             N+               +      + L  N+            + +  + +++N ++ 
Sbjct: 652 SYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTS 711

Query: 737 AIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRM 796
              N +    G                                             L   
Sbjct: 712 IPENSLKPKDGNYKNTY--------------------------------------LL-TT 732

Query: 797 IDISRNNFSGKIP--LEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESI------DFS 848
           ID+  N  +  +      T L  L +++ SYN F+   P        L++       D  
Sbjct: 733 IDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAE 790

Query: 849 ANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSS--TQLQSFDVSSFAGNDLCGAPLPK 906
            N++  + P  +++   L  L + +N++  K+      QL   D++    N      +  
Sbjct: 791 GNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLTPQLYILDIA---DNPNISIDVTS 846

Query: 907 NC 908
            C
Sbjct: 847 VC 848

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  141 bits (356), Expect = 2e-34
 Identities = 47/288 (16%), Positives = 96/288 (33%), Gaps = 26/288 (9%)

Query: 115 INPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNL 174
            + SL  +  L  LD   N    ++    FG+   L  L L   +I  +          +
Sbjct: 565 ASASLQKMVKLGLLDCVHNK---VRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQV 621

Query: 175 QFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWL---MVTNKLPSLVELRLA 231
           + L  S N L Y+ N +    +  +  +D     +      +   M   K  +   + L+
Sbjct: 622 EGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLS 681

Query: 232 NCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNH 291
             ++  F     A  S ++ + LS+N      IP     P     +N   L  + L  N 
Sbjct: 682 YNEIQKFPTELFATGSPISTIILSNNLMTS--IPENSLKPKDGNYKNTYLLTTIDLRFNK 739

Query: 292 FNSSIPN--WLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMG-----IEG 344
             +S+ +        +L  + +S N    +  ++   N + +    +          I  
Sbjct: 740 L-TSLSDDFRATTLPYLSNMDVSYNCFS-SFPTQ-PLNSSQLKAFGIRHQRDAEGNRILR 796

Query: 345 RIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRS 392
           + P  + +  +L  L +    + +   ++           L  LD+  
Sbjct: 797 QWPTGITTCPSLIQLQIGSNDIRKVDEKLT--------PQLYILDIAD 836

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 48.3 bits (115), Expect = 1e-05
 Identities = 15/152 (9%), Positives = 44/152 (28%), Gaps = 38/152 (25%)

Query: 794 VRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLS 853
           V  + ++     G++P  +  L  L+ L+F  +S T           + +  +   +++ 
Sbjct: 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIR 384

Query: 854 GEIPE--------------------------SMSSLTFLN----HLNLSNNNLTGKIPSS 883
               +                           +   + ++     +    N +T  I  +
Sbjct: 385 MHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKA 443

Query: 884 ----TQLQSFDVSSFAGNDLCGAPLPKNCTEN 911
               T+LQ    +    +      +  +  + 
Sbjct: 444 IQRLTKLQIIYFA---NSPFTYDNIAVDWEDA 472

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  185 bits (472), Expect = 1e-48
 Identities = 131/606 (21%), Positives = 213/606 (35%), Gaps = 82/606 (13%)

Query: 121 DLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMI-PHHLGNLSNLQFLDL 179
            L     L LSFN  + +     F  +  L+ L L        I      NL NL+ LDL
Sbjct: 22  VLNTTERLLLSFNYIRTVT-ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80

Query: 180 SSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFS 239
            S+ + ++       GL  L  L L    LS A         L +L  L L+  Q+    
Sbjct: 81  GSSKIYFLHPD-AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY 139

Query: 240 LLAT-ANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPN 298
           L  +    +SL  +D S NQ     +           LQ   +L    L +N   S +  
Sbjct: 140 LHPSFGKLNSLKSIDFSSNQIFL--VCEHEL----EPLQGK-TLSFFSLAANSLYSRVSV 192

Query: 299 ------WLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMAS 352
                   +R + LE L +S N     I       ++      L L              
Sbjct: 193 DWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH------------ 240

Query: 353 LCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTL 412
             ++        ++  +  +  + F+G   + +  LDL    ++   +      K++  L
Sbjct: 241 --HIMGAGFGFHNIK-DPDQ--NTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVL 295

Query: 413 DFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGV 472
           + A N I  +  E+   L  L+VL ++ N L   L + +F  L K+++  +  N + +  
Sbjct: 296 NLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQKNHIAI-- 352

Query: 473 KHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLK 532
               I       L                  + LQ L L +++++ I  I  +       
Sbjct: 353 ----IQDQTFKFL------------------EKLQTLDLRDNALTTIHFIPSIPD----- 385

Query: 533 FLDLGQNQIHGPIPNLTEFTGLLILS--VYSNNMSGPLPLISSNLVFLDLSNNLFSGSIS 590
            + L  N++   +P +     L+ LS     N       L   +L  L L+ N FS    
Sbjct: 386 -IFLSGNKLVT-LPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSG 443

Query: 591 PFLCYRINETKSLNALQLNDNYLNGE-----LPDCWMSYQNLKTLKLSNNKFTGNLPYSM 645
                  +E  SL  L L +N L          D +    +L+ L L++N      P   
Sbjct: 444 DQTP---SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVF 500

Query: 646 GSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLIL 705
             LT+L  L L  NRL+   L        LE LD+  N     +     + F  + VL +
Sbjct: 501 SHLTALRGLSLNSNRLTV--LSHNDLPANLEILDISRN----QLLAPNPDVFVSLSVLDI 554

Query: 706 RSNKFH 711
             NKF 
Sbjct: 555 THNKFI 560

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  173 bits (441), Expect = 7e-45
 Identities = 114/596 (19%), Positives = 200/596 (33%), Gaps = 97/596 (16%)

Query: 118 SLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFL 177
           S   L+ L  L+L             F ++ NLR L+L  ++I  + P     L +L  L
Sbjct: 43  SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102

Query: 178 DLSSNYLLYVD-NFWWLSGLSFLEHLDL-----RSVNLSKAFDWLMVTNKLPSLVELRLA 231
            L    L        +   L  L  LDL     RS+ L  +F       KL SL  +  +
Sbjct: 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG------KLNSLKSIDFS 156

Query: 232 NCQLHHFSLLATANFS--SLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDS 289
           + Q+              +L+   L+ N        S  +G      +N+  L  L +  
Sbjct: 157 SNQIFLVCEHELEPLQGKTLSFFSLAANSLYS--RVSVDWGKCMNPFRNM-VLEILDVSG 213

Query: 290 NHFNSSIPNWLYRFI------------HLEYLSLSNNSLQGTIDSEALGNL--TSISWLD 335
           N +   I       I            H+       ++++   D      L  +S+  LD
Sbjct: 214 NGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK-DPDQNTFAGLARSSVRHLD 272

Query: 336 LSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSI 395
           LS    +     R   +L +LK LNL    +++ I++  + F G                
Sbjct: 273 LSHG-FVFSLNSRVFETLKDLKVLNLAYNKINK-IAD--EAFYG---------------- 312

Query: 396 YGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANL 455
                       N+  L+ + N +  L   +   L  +  + +  N +   +    F  L
Sbjct: 313 ----------LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFL 361

Query: 456 TKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSS 515
            KL    +  N LT            +  + L    + +   + L        ++L  + 
Sbjct: 362 EKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLVTLPKINLT----ANLIHLSENR 412

Query: 516 ISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNL 575
           + ++  + FL     L+ L L QN+           +                     +L
Sbjct: 413 LENLDILYFLLRVPHLQILILNQNRFSS-CSGDQTPSEN------------------PSL 453

Query: 576 VFLDLSNNLFSGSISPFLCYRI-NETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSN 634
             L L  N+   +    LC+ +      L  L LN NYLN   P  +     L+ L L++
Sbjct: 454 EQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNS 513

Query: 635 NKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIP 690
           N+ T  L ++     +L  L +  N+L      +     +L  LD+  N+F+    
Sbjct: 514 NRLT-VLSHND-LPANLEILDISRNQLLA---PNPDVFVSLSVLDITHNKFICECE 564

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  169 bits (429), Expect = 3e-43
 Identities = 131/777 (16%), Positives = 255/777 (32%), Gaps = 135/777 (17%)

Query: 202 LDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDK 261
              R  NL++          L +   L L+   +   +  +      L +L+L       
Sbjct: 9   AFYRFCNLTQVPQ------VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT-P 61

Query: 262 WFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQ-GTI 320
             I    F       +NL +LR L L S+      P+      HL  L L    L    +
Sbjct: 62  LTIDKEAF-------RNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVL 114

Query: 321 DSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGC 380
                 NL +++ LDLS N      +  S   L +LKS++     +   + E        
Sbjct: 115 KDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF-LVCE--HELEPL 171

Query: 381 VSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRIND 440
               L    L ++S+Y  ++   G+  N                    +   L +L ++ 
Sbjct: 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPF------------------RNMVLEILDVSG 213

Query: 441 NKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWL 500
           N     ++      ++K   F +      +G              G  N     +     
Sbjct: 214 NGWTVDITGNFSNAISKSQAFSLILAHHIMGAG-----------FGFHNIKDPDQNTFAG 262

Query: 501 YSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVY 560
            ++  ++ L L +  +  +   R  ++   LK L+L  N+I+  I +   F GL      
Sbjct: 263 LARSSVRHLDLSHGFVFSL-NSRVFETLKDLKVLNLAYNKINK-IADEA-FYGL------ 313

Query: 561 SNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDC 620
                        NL  L+LS NL    +             +  + L  N++       
Sbjct: 314 ------------DNLQVLNLSYNLLG-ELYSSN---FYGLPKVAYIDLQKNHIAIIQDQT 357

Query: 621 WMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCT-ALESLD 679
           +   + L+TL L +N  T     ++  + S+  + L  N+L      +L         + 
Sbjct: 358 FKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLV-----TLPKINLTANLIH 407

Query: 680 VGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLC-DLAFLQILDIADNNLSGAI 738
           + EN        +   R   + +LIL  N+F          +   L+ L + +N L  A 
Sbjct: 408 LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAW 467

Query: 739 PNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMID 798
              +           F                                    L+ ++++ 
Sbjct: 468 ETELCW-------DVFEG----------------------------------LSHLQVLY 486

Query: 799 ISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPE 858
           ++ N  +   P   ++L AL+ L+ + N  T  +  +  +  +LE +D S NQL    P+
Sbjct: 487 LNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHND-LPANLEILDISRNQLLAPNPD 544

Query: 859 SMSSLTFLNHLNLSNNNLTGKIPSST-----QLQSFDVSSFAGNDLCGAPLPKNCTENVS 913
              SL+    L++++N    +   ST        +  ++    +  C  P   +     S
Sbjct: 545 VFVSLS---VLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFS 601

Query: 914 ISEDENGDEDEDEVDHWLYVSAALGFVVGFWCFMGPLLVRRRWRYKYYHSLNRLGDR 970
           +S +   +E+  +   +         +  F   +  +   R + +  Y +  RL  +
Sbjct: 602 LSTEGCDEEEVLKSLKFSLFIVCTVTLTLFLMTILTVTKFRGFCFICYKTAQRLVFK 658

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  130 bits (328), Expect = 5e-31
 Identities = 72/444 (16%), Positives = 141/444 (31%), Gaps = 32/444 (7%)

Query: 85  HVLHLDLRNPFNYHKESEYEAIRRTALVGKINPSLLDLKHLSYLDLSFNDFQGIQIPRFF 144
             + L++ +        +       A+      SL+   H+      F++ +      F 
Sbjct: 202 RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261

Query: 145 G-SMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLD 203
           G +  ++R+L+LS   +  +       L +L+ L+L+ N +  + +     GL  L+ L+
Sbjct: 262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE-AFYGLDNLQVLN 320

Query: 204 LRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWF 263
           L    L + +        LP +  + L    +             L  LDL DN      
Sbjct: 321 LSYNLLGELYSSNF--YGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL---- 374

Query: 264 IPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSE 323
                       +  + S+  + L  N   +     L        + LS N L+      
Sbjct: 375 ----------TTIHFIPSIPDIFLSGNKLVTLPKINLT----ANLIHLSENRLENLDILY 420

Query: 324 ALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEIL--DIFSGCV 381
            L  +  +  L L+ N        ++ +   +L+ L L    L       L  D+F G  
Sbjct: 421 FLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLS 480

Query: 382 SNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDN 441
              L+ L L  + +             +  L   +N +  L    L   + L +L I+ N
Sbjct: 481 H--LQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRN 536

Query: 442 KLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLY 501
           +    L A +      LS   +  NK     +      +               + ++  
Sbjct: 537 Q----LLAPNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPD 592

Query: 502 SQKHLQFLYLVNSSISDIFPIRFL 525
           S   +    L      +   ++ L
Sbjct: 593 SFSGVSLFSLSTEGCDEEEVLKSL 616

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  172 bits (439), Expect = 8e-46
 Identities = 120/625 (19%), Positives = 207/625 (33%), Gaps = 125/625 (20%)

Query: 124 HLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNY 183
               LDLSFN  + +     F S   L+ L+LSR  I  +      +LS+L  L L+ N 
Sbjct: 29  STKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 184 LLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLAT 243
           +  +      SGLS L+ L     NL+   ++ +    L +L EL +A+  +  F L   
Sbjct: 88  IQSLALGA-FSGLSSLQKLVAVETNLASLENFPI--GHLKTLKELNVAHNLIQSFKLPEY 144

Query: 244 -ANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLT-SLRHLGLDSNHFNSSIPNWLY 301
            +N ++L  LDLS N+     I         R L  +      L L  N  N  I    +
Sbjct: 145 FSNLTNLEHLDLSSNKIQS--IYCTDL----RVLHQMPLLNLSLDLSLNPMNF-IQPGAF 197

Query: 302 RFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMG-----IEGRIPRSMASLCNL 356
           + I L  L+L NN     +    +  L  +    L L        +E     ++  LCNL
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 357 KSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFAN 416
                R  +L   + +I+D+F+   +  + S  L S +I                L+  N
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTN--VSSFSLVSVTIER--VKDFSYNFGWQHLELVN 313

Query: 417 NSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDW 476
                       +L +L+ L    NK     +A    +L  L +  +  N L+       
Sbjct: 314 CKFGQF---PTLKLKSLKRLTFTSNKGG---NAFSEVDLPSLEFLDLSRNGLS------- 360

Query: 477 IPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDL 536
                                   +    L++L L  + +  +          QL+ LD 
Sbjct: 361 ---------------FKGCCSQSDFGTTSLKYLDLSFNGVITMSSN--FLGLEQLEHLDF 403

Query: 537 GQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYR 596
             + +   +   + F  L                   NL++LD+S+     +        
Sbjct: 404 QHSNLKQ-MSEFSVFLSL------------------RNLIYLDISHTHTRVAF------- 437

Query: 597 INETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNL-PYSMGSLTSLVWLH 655
                                   +    +L+ LK++ N F  N  P     L +L +L 
Sbjct: 438 ---------------------NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476

Query: 656 LGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLP 715
           L + +L      +  + ++L+ L+                         + SN+      
Sbjct: 477 LSQCQLEQLSPTAFNSLSSLQVLN-------------------------MASNQLKSVPD 511

Query: 716 TGLCDLAFLQILDIADNNLSGAIPN 740
                L  LQ + +  N    + P 
Sbjct: 512 GIFDRLTSLQKIWLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  168 bits (427), Expect = 3e-44
 Identities = 99/560 (17%), Positives = 179/560 (31%), Gaps = 110/560 (19%)

Query: 118 SLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFL 177
           +   L HLS L L+ N  Q +     F  + +L+ L    T +  +    +G+L  L+ L
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLA-LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 178 DLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHH 237
           +++ N                     ++S  L + F        L +L  L L++ ++  
Sbjct: 130 NVAHNL--------------------IQSFKLPEYFS------NLTNLEHLDLSSNKIQS 163

Query: 238 FSLLATANFSSLTV----LDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFN 293
                      + +    LDLS N  +           I  G      L  L L +N  +
Sbjct: 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNF----------IQPGAFKEIRLHKLTLRNNFDS 213

Query: 294 SSIP-NWLYRFIHLEYLSLSNNSLQG-----TIDSEALGNLTSISWLDLSLNM--GIEGR 345
            ++    +     LE   L     +        D  AL  L +++  +  L         
Sbjct: 214 LNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDD 273

Query: 346 IPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQ 405
           I      L N+ S +L  V + +       +     + G + L+L +       T +L  
Sbjct: 274 IIDLFNCLTNVSSFSLVSVTIER-------VKDFSYNFGWQHLELVNCKFGQFPTLKLKS 326

Query: 406 FKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNG-TLSAIHFANLTKLSWFRVD 464
            K    L F +N       E    L +L  L ++ N L+     +      T L +  + 
Sbjct: 327 LKR---LTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381

Query: 465 GNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRF 524
            N +                                   + L+ L   +S++  +     
Sbjct: 382 FNGVI-------------------------TMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416

Query: 525 LKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNL 584
             S   L +LD+           +  F GL                  S+L  L ++ N 
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGI--FNGL------------------SSLEVLKMAGNS 456

Query: 585 FSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYS 644
           F  +  P +     E ++L  L L+   L    P  + S  +L+ L +++N+        
Sbjct: 457 FQENFLPDI---FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGI 513

Query: 645 MGSLTSLVWLHLGENRLSGN 664
              LTSL  + L  N    +
Sbjct: 514 FDRLTSLQKIWLHTNPWDCS 533

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  157 bits (399), Expect = 1e-40
 Identities = 98/528 (18%), Positives = 173/528 (32%), Gaps = 65/528 (12%)

Query: 223 PSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSL 282
            S   L L+   L H    +  +F  L VLDLS  +     I    +       Q+L+ L
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT--IEDGAY-------QSLSHL 78

Query: 283 RHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGI 342
             L L  N   S           L+ L     +L  ++++  +G+L ++  L+++ N+  
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ 137

Query: 343 EGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQ 402
             ++P   ++L NL+ L+L    +       L          L  + L            
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR--------VLHQMPLL----------- 178

Query: 403 LGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFR 462
                  ++LD + N +  + P +  ++  L  L + +N  +  +       L  L   R
Sbjct: 179 ------NLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHR 231

Query: 463 VDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPI 522
           +   +       +      L   GL N  +          +  L +L      I D+F  
Sbjct: 232 LVLGEFRNEGNLEKFDKSALE--GLCNLTI---------EEFRLAYLDYYLDDIIDLFNC 280

Query: 523 RFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSN 582
                   +    L    I   + + +   G   L + +        L   +L  L  ++
Sbjct: 281 LT-----NVSSFSLVSVTIER-VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTS 334

Query: 583 NLFSGSISPFLCYRINETKSLNALQLNDNYLN--GELPDCWMSYQNLKTLKLSNNKFTGN 640
           N    +    +     +  SL  L L+ N L+  G          +LK L LS N     
Sbjct: 335 NKGG-NAFSEV-----DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-T 387

Query: 641 LPYSMGSLTSLVWLHLGENRLSGNILVS-LKNCTALESLDVGENEFVGNIPTWIGERFSR 699
           +  +   L  L  L    + L      S   +   L  LD+            I    S 
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSS 446

Query: 700 MVVLILRSNKFHGPLPTG-LCDLAFLQILDIADNNLSGAIPNCINNLT 746
           + VL +  N F          +L  L  LD++   L    P   N+L+
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  137 bits (346), Expect = 7e-34
 Identities = 91/450 (20%), Positives = 153/450 (34%), Gaps = 36/450 (8%)

Query: 118 SLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQF- 176
            +  LK L  L+++ N  Q  ++P +F ++ NL +L+LS  +I  +    L  L  +   
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178

Query: 177 ---LDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLA-- 231
              LDLS N + ++        +  L  L LR+ N             L  L   RL   
Sbjct: 179 NLSLDLSLNPMNFIQP-GAFKEIR-LHKLTLRN-NFDSLNVMKTCIQGLAGLEVHRLVLG 235

Query: 232 ----NCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGL 287
                  L  F   A     +LT+ +      D +         I      LT++    L
Sbjct: 236 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDD------IIDLFNCLTNVSSFSL 289

Query: 288 DSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIP 347
            S      + +        ++L L N        +  L +L     L  + N G      
Sbjct: 290 VSVTIER-VKD-FSYNFGWQHLELVNCKFGQ-FPTLKLKSLKR---LTFTSNKGGN---A 340

Query: 348 RSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFK 407
            S   L +L+ L+L    LS           G  S  L+ LDL  + +   ++      +
Sbjct: 341 FSEVDLPSLEFLDLSRNGLS-FKGCCSQSDFGTTS--LKYLDLSFNGVI-TMSSNFLGLE 396

Query: 408 NIVTLDFANNSIVGLIPES-LGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGN 466
            +  LDF ++++  +   S    L  L  L I+            F  L+ L   ++ GN
Sbjct: 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGN 455

Query: 467 KLTLGVKHDWIPPF-QLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFL 525
                   D       L  L L  C +    P    S   LQ L + ++ +  + P    
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV-PDGIF 514

Query: 526 KSASQLKFLDLGQNQIHGPIPNLTEFTGLL 555
              + L+ + L  N      P +   +  L
Sbjct: 515 DRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  135 bits (342), Expect = 2e-33
 Identities = 115/630 (18%), Positives = 202/630 (32%), Gaps = 132/630 (20%)

Query: 272 IPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSI 331
           IP  L    S ++L L  N          + F  L+ L LS   +Q TI+  A  +L+ +
Sbjct: 22  IPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHL 78

Query: 332 SWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLR 391
           S L L+ N  I+     + + L +L+ L                         L SL+  
Sbjct: 79  STLILTGNP-IQSLALGAFSGLSSLQKLVAV-------------------ETNLASLE-- 116

Query: 392 SDSIYGHLTDQLGQFKNIVTLDFANNSIVGL-IPESLGQLSTLRVLRINDNKLNGTLSAI 450
                      +G  K +  L+ A+N I    +PE    L+ L  L ++ NK+  ++   
Sbjct: 117 --------NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCT 167

Query: 451 HFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLY 510
               L ++                    P   ++L L    +        + +  L  L 
Sbjct: 168 DLRVLHQM--------------------PLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLT 206

Query: 511 LVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPL 570
           L N+  S       ++  + L+   L   +      NL +F           + S    L
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN-EGNLEKF-----------DKSALEGL 254

Query: 571 ISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTL 630
            +  +    L+   +       L    N   ++++  L    +       +      + L
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDL---FNCLTNVSSFSLVSVTIERVKDFSYNF--GWQHL 309

Query: 631 KLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEF-VGNI 689
           +L N KF     +    L SL  L    N+       S  +  +LE LD+  N       
Sbjct: 310 ELVNCKFGQ---FPTLKLKSLKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFKGC 364

Query: 690 PTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCI-NNLTGM 748
            +      + +  L L  N     + +    L  L+ LD   +NL       +  +L  +
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423

Query: 749 VTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKI 808
           +                                               +DIS  +     
Sbjct: 424 IY----------------------------------------------LDISHTHTRVAF 437

Query: 809 PLEVTNLKALQSLNFSYNSFTGRI-PESIGVMRSLESIDFSANQLSGEIPESMSSLTFLN 867
                 L +L+ L  + NSF     P+    +R+L  +D S  QL    P + +SL+ L 
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497

Query: 868 HLNLSNNNLT----GKIPSSTQLQSFDVSS 893
            LN+++N L     G     T LQ   + +
Sbjct: 498 VLNMASNQLKSVPDGIFDRLTSLQKIWLHT 527

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  126 bits (318), Expect = 3e-30
 Identities = 64/364 (17%), Positives = 120/364 (32%), Gaps = 40/364 (10%)

Query: 114 KINPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGG---MIPHHLGN 170
            I P       L  L L  N      +      +  L    L          +       
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250

Query: 171 LSNLQFLDLSSNYLLYVDNFWW-----LSGLSFLEHLDLRSVNLSKAFDWLMVTN----- 220
           L  L  L +    L Y+D +        + L+ +    L SV + +  D+          
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLE 310

Query: 221 ------------KLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWV 268
                       KL SL  L   + +    +  +  +  SL  LDLS N        S  
Sbjct: 311 LVNCKFGQFPTLKLKSLKRLTFTSNKGG--NAFSEVDLPSLEFLDLSRNGLSFKGCCSQS 368

Query: 269 FGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNL 328
                      TSL++L L  N    ++ +       LE+L   +++L+   +     +L
Sbjct: 369 D-------FGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420

Query: 329 TSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESL 388
            ++ +LD+S               L +L+ L + G    +      DIF+   +  L  L
Sbjct: 421 RNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLP--DIFTELRN--LTFL 475

Query: 389 DLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLS 448
           DL    +            ++  L+ A+N +  +      +L++L+ + ++ N  + +  
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535

Query: 449 AIHF 452
            I +
Sbjct: 536 RIDY 539

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.4 bits (126), Expect = 5e-07
 Identities = 20/123 (16%), Positives = 41/123 (33%), Gaps = 7/123 (5%)

Query: 788 EDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDF 847
           +++    + +D+S N           +   LQ L+ S          +   +  L ++  
Sbjct: 24  DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 83

Query: 848 SANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSS----TQLQSFDVSSFAGNDLCGAP 903
           + N +      + S L+ L  L     NL             L+  +V+    N +    
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA---HNLIQSFK 140

Query: 904 LPK 906
           LP+
Sbjct: 141 LPE 143

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  165 bits (419), Expect = 3e-43
 Identities = 92/546 (16%), Positives = 173/546 (31%), Gaps = 83/546 (15%)

Query: 118 SLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFL 177
            L    +L  L L  +    I+    F S+G+L +L+LS   +  +     G LS+L++L
Sbjct: 45  DLRACANLQVLILKSSRINTIE-GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL 103

Query: 178 DLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHH 237
           +L  N    +        L+ L+ L + +V        +     L SL EL +    L +
Sbjct: 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG-LTSLNELEIKALSLRN 162

Query: 238 FSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIP 297
           +   +  +   +  L L  ++    F+              L+S+R+L L   +      
Sbjct: 163 YQSQSLKSIRDIHHLTLHLSESA--FLLEIFA-------DILSSVRYLELRDTNLARFQF 213

Query: 298 NWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLK 357
           + L        +          +  E+   L  +    L L+               +  
Sbjct: 214 SPLPVDEVSSPMKKLAFRGS-VLTDESFNELLKLLRYILELS----------EVEFDDCT 262

Query: 358 SLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANN 417
              L     +   S+++       +  +  L +    ++  L+      + +  +   N+
Sbjct: 263 LNGLG--DFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS 320

Query: 418 SIVGLIPESLGQLSTLRVLRINDNKL--NGTLSAIHFANLTKLSWFRVDGNKLTLGVKHD 475
            +  +       L +L  L +++N +      ++        L    +  N L       
Sbjct: 321 KVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR------ 374

Query: 476 WIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLD 535
            +     + L L+N                                         L  LD
Sbjct: 375 SMQKTGEILLTLKN-----------------------------------------LTSLD 393

Query: 536 LGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCY 595
           + +N  H    +      +  L++ S  +      I   L  LD+SNN    S S FL  
Sbjct: 394 ISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLD-SFSLFL-- 450

Query: 596 RINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLH 655
                  L  L ++ N L   LPD  +    L  +K+S N+           LTSL  + 
Sbjct: 451 -----PRLQELYISRNKLK-TLPDASLF-PVLLVMKISRNQLKSVPDGIFDRLTSLQKIW 503

Query: 656 LGENRL 661
           L  N  
Sbjct: 504 LHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  161 bits (408), Expect = 6e-42
 Identities = 104/565 (18%), Positives = 180/565 (31%), Gaps = 83/565 (14%)

Query: 124 HLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNY 183
            +  LDLSFN    I       +  NL+ L L  +RI  +      +L +L+ LDLS N+
Sbjct: 27  AMKSLDLSFNKITYIG-HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85

Query: 184 LLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANC-QLHHFSLLA 242
           L  + + W    LS L++L+L   N  +      +   L +L  LR+ N         + 
Sbjct: 86  LSSLSSSW-FGPLSSLKYLNLMG-NPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRID 143

Query: 243 TANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYR 302
            A  +SL  L++           S          +++  + HL L  +     +  +   
Sbjct: 144 FAGLTSLNELEIKALSLRN--YQSQSL-------KSIRDIHHLTLHLSESAFLLEIFADI 194

Query: 303 FIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLR 362
              + YL L + +L        L      S +      G       S   L  L    L 
Sbjct: 195 LSSVRYLELRDTNLA-RFQFSPLPVDEVSSPMKKLAFRGSV-LTDESFNELLKLLRYILE 252

Query: 363 GVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGL 422
              +          F  C  NGL   +     +   L     +   I  L      +   
Sbjct: 253 LSEVE---------FDDCTLNGLGDFNPSESDVVSELGKV--ETVTIRRLHIPQFYLFYD 301

Query: 423 IPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQL 482
           +      L  ++ + + ++K+   +      +L  L +  +  N +              
Sbjct: 302 LSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMV------------- 347

Query: 483 VALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPI-RFLKSASQLKFLDLGQNQI 541
               L+N      +P        LQ L L  + +  +      L +   L  LD+ +N  
Sbjct: 348 -EEYLKNSACKGAWP-------SLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF 399

Query: 542 HGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETK 601
           H    +      +  L++ S  +      I   L  LD+SNN    S S FL        
Sbjct: 400 HPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLD-SFSLFL-------- 450

Query: 602 SLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRL 661
                                    L+ L +S NK    LP        L+ + +  N+L
Sbjct: 451 -----------------------PRLQELYISRNKLK-TLP-DASLFPVLLVMKISRNQL 485

Query: 662 SGNILVSLKNCTALESLDVGENEFV 686
                      T+L+ + +  N + 
Sbjct: 486 KSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  157 bits (399), Expect = 9e-41
 Identities = 96/512 (18%), Positives = 185/512 (36%), Gaps = 50/512 (9%)

Query: 246 FSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIH 305
            +++  LDLS N+     I            +   +L+ L L S+  N+   +  Y    
Sbjct: 25  TAAMKSLDLSFNKITY--IGHGDL-------RACANLQVLILKSSRINTIEGDAFYSLGS 75

Query: 306 LEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVH 365
           LE+L LS+N L  ++ S   G L+S+ +L+L  N      +     +L NL++L +  V 
Sbjct: 76  LEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE 134

Query: 366 LSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPE 425
              EI      F+G  S  L  L++++ S+  + +  L   ++I  L    +    L+  
Sbjct: 135 TFSEIRR--IDFAGLTS--LNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEI 190

Query: 426 SLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVAL 485
               LS++R L + D  L               S  +    + ++     +    +L+  
Sbjct: 191 FADILSSVRYLELRDTNLA-RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRY 249

Query: 486 GLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPI 545
            L          +               S    +  +  +++   ++ L + Q  +   +
Sbjct: 250 ILELSE------VEFDDCTLNGLGDFNPSESDVVSELGKVET-VTIRRLHIPQFYLFYDL 302

Query: 546 PN-LTEFTGLLILSVYSNNMSGPLPLISS---NLVFLDLSNNLFSGSISPFLCYRINETK 601
               +    +  ++V ++ +       S    +L FLDLS NL                 
Sbjct: 303 STVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV-EEYLKNSACKGAWP 361

Query: 602 SLNALQLNDNYLN--GELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGEN 659
           SL  L L+ N+L    +  +  ++ +NL +L +S N F   +P S      + +L+L   
Sbjct: 362 SLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSST 420

Query: 660 R----------------LSGNILVSL-KNCTALESLDVGENEFVGNIPTWIGERFSRMVV 702
                            +S N L S       L+ L +  N+    +P      F  ++V
Sbjct: 421 GIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD--ASLFPVLLV 477

Query: 703 LILRSNKFHGPLPTGLCDLAFLQILDIADNNL 734
           + +  N+           L  LQ + +  N  
Sbjct: 478 MKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  152 bits (385), Expect = 6e-39
 Identities = 101/557 (18%), Positives = 183/557 (32%), Gaps = 73/557 (13%)

Query: 202 LDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDK 261
            D RS + +     L       ++  L L+  ++ +         ++L VL L  ++ + 
Sbjct: 10  CDGRSRSFTSIPSGL-----TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT 64

Query: 262 WFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTID 321
             I    F        +L SL HL L  NH +S   +W      L+YL+L  N  Q    
Sbjct: 65  --IEGDAF-------YSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGV 115

Query: 322 SEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCV 381
           +    NLT++  L +              A L +L  L ++                   
Sbjct: 116 TSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA------------------ 157

Query: 382 SNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDN 441
              L +   +S          L   ++I  L    +    L+      LS++R L + D 
Sbjct: 158 -LSLRNYQSQS----------LKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDT 206

Query: 442 KLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLY 501
            L               S  +    + ++     +    +L+   L          +   
Sbjct: 207 NLA-RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSE------VEFD 259

Query: 502 SQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPN-LTEFTGLLILSVY 560
                       S    +  +  +++   ++ L + Q  +   +    +    +  ++V 
Sbjct: 260 DCTLNGLGDFNPSESDVVSELGKVET-VTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVE 318

Query: 561 SNNMSGPLPLISS---NLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLN--G 615
           ++ +       S    +L FLDLS NL                 SL  L L+ N+L    
Sbjct: 319 NSKVFLVPCSFSQHLKSLEFLDLSENLMV-EEYLKNSACKGAWPSLQTLVLSQNHLRSMQ 377

Query: 616 ELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNC--T 673
           +  +  ++ +NL +L +S N F   +P S      + +L+     LS   +  +K C   
Sbjct: 378 KTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLN-----LSSTGIRVVKTCIPQ 431

Query: 674 ALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNN 733
            LE LDV  N               R+  L +  NK    LP        L ++ I+ N 
Sbjct: 432 TLEVLDVSNNNL-----DSFSLFLPRLQELYISRNKLKT-LPDASL-FPVLLVMKISRNQ 484

Query: 734 LSGAIPNCINNLTGMVT 750
           L        + LT +  
Sbjct: 485 LKSVPDGIFDRLTSLQK 501

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  130 bits (329), Expect = 8e-32
 Identities = 69/445 (15%), Positives = 147/445 (33%), Gaps = 38/445 (8%)

Query: 114 KINPSLLD-LKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHH-LGNL 171
            ++ S    L  L YL+L  N +Q + +   F ++ NL+ L +        I       L
Sbjct: 88  SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL 147

Query: 172 SNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLA 231
           ++L  L++ +  L    +   L  +  + HL L     +   +  +  + L S+  L L 
Sbjct: 148 TSLNELEIKALSLRNYQSQS-LKSIRDIHHLTLHLSESAFLLE--IFADILSSVRYLELR 204

Query: 232 NCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSN- 290
           +  L  F           + +     +     +    F  + + L+ +  L  +  D   
Sbjct: 205 DTNLARFQFSPLPVDEVSSPMKKLAFRGSV--LTDESFNELLKLLRYILELSEVEFDDCT 262

Query: 291 -----HFNSSIPNWLYRFIHLEYLSLSNNSLQG----TIDSEALGNLTSISWLDLSLNMG 341
                 FN S  + +     +E +++    +         S     L  +  + +  +  
Sbjct: 263 LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS-K 321

Query: 342 IEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIY--GHL 399
           +          L +L+ L+L    + +E  +         S  L++L L  + +      
Sbjct: 322 VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS--LQTLVLSQNHLRSMQKT 379

Query: 400 TDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLS 459
            + L   KN+ +LD + N+    +P+S      +R L ++   +      +       L 
Sbjct: 380 GEILLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTGI----RVVKTCIPQTLE 434

Query: 460 WFRVDGNKLTLGVKHDWIPPF--QLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSIS 517
              V  N L           F  +L  L +    +    P        L  + +  + + 
Sbjct: 435 VLDVSNNNLDS------FSLFLPRLQELYISRNKL-KTLPDASLFPV-LLVMKISRNQLK 486

Query: 518 DIFPIRFLKSASQLKFLDLGQNQIH 542
            + P       + L+ + L  N   
Sbjct: 487 SV-PDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  115 bits (289), Expect = 9e-27
 Identities = 87/531 (16%), Positives = 172/531 (32%), Gaps = 81/531 (15%)

Query: 381 VSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRIND 440
           ++  ++SLDL  + I       L    N+  L   ++ I  +  ++   L +L  L ++D
Sbjct: 24  LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD 83

Query: 441 NKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPP-FQLVALGLRNCYVGSRFP-L 498
           N L+ +LS+  F  L+ L +  + GN           P    L  L + N    S    +
Sbjct: 84  NHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI 142

Query: 499 WLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPN-LTEFTGLLIL 557
                  L  L +   S+ +       KS   +  L L  ++    +       + +  L
Sbjct: 143 DFAGLTSLNELEIKALSLRNYQSQSL-KSIRDIHHLTLHLSESAFLLEIFADILSSVRYL 201

Query: 558 SVYSNNMSG------PLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDN 611
            +   N++       P+  +SS +  L    ++ +      L   +     L+ ++ +D 
Sbjct: 202 ELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC 261

Query: 612 YLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKN 671
            LNG                 + ++             ++  LH+ +  L  ++      
Sbjct: 262 TLNG-------------LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSL 308

Query: 672 CTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKF---HGPLPTGLCDLAFLQILD 728
              ++ + V  ++    +P    +    +  L L  N     +            LQ L 
Sbjct: 309 LEKVKRITVENSKV-FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLV 367

Query: 729 IADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYE 788
           ++ N+L  ++      L  +                                        
Sbjct: 368 LSQNHLR-SMQKTGEILLTLK--------------------------------------- 387

Query: 789 DILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFS 848
              NL   +DISRN F   +P      + ++ LN S       +     + ++LE +D S
Sbjct: 388 ---NL-TSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKT--CIPQTLEVLDVS 439

Query: 849 ANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDL 899
            N L       +  L     L +S N L   +P ++      V   + N L
Sbjct: 440 NNNLD-SFSLFLPRLQ---ELYISRNKLK-TLPDASLFPVLLVMKISRNQL 485

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  110 bits (276), Expect = 3e-25
 Identities = 54/347 (15%), Positives = 126/347 (36%), Gaps = 39/347 (11%)

Query: 122 LKHLSYLDLSFNDFQGIQIPRFFG--SMGNLRYLNLSRTRIGGM-------IPHHLGNLS 172
           L  + YL+L   +    Q            ++ L    + +          +  ++  LS
Sbjct: 195 LSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELS 254

Query: 173 NLQFLDLSSNYLLYVDN--FWWLSGLSFLEHLDLRSVNLSKAFDWLMVTN---KLPSLVE 227
            ++F D + N L   +      +S L  +E + +R +++ + + +  ++     L  +  
Sbjct: 255 EVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKR 314

Query: 228 LRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGL 287
           + + N ++       + +  SL  LDLS+N   + ++ +              SL+ L L
Sbjct: 315 ITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSAC------KGAWPSLQTLVL 368

Query: 288 DSNHFNS--SIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGR 345
             NH  S       L    +L  L +S N+       ++      + +L+LS    I   
Sbjct: 369 SQNHLRSMQKTGEILLTLKNLTSLDISRNTF--HPMPDSCQWPEKMRFLNLSSTG-IR-V 424

Query: 346 IPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQ 405
           +         L+ L++   +L    S  L          L+ L +  + +          
Sbjct: 425 VKTC--IPQTLEVLDVSNNNLD-SFSLFL--------PRLQELYISRNKL--KTLPDASL 471

Query: 406 FKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHF 452
           F  ++ +  + N +  +      +L++L+ + ++ N  + +   I +
Sbjct: 472 FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 518

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 75.9 bits (187), Expect = 2e-14
 Identities = 39/156 (25%), Positives = 64/156 (41%), Gaps = 19/156 (12%)

Query: 118 SLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFL 177
            LL LK+L+ LD+S N F    +P        +R+LNLS T I  ++         L+ L
Sbjct: 382 ILLTLKNLTSLDISRNTFH--PMPDSCQWPEKMRFLNLSSTGIR-VVKT--CIPQTLEVL 436

Query: 178 DLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHH 237
           D+S+N L           L  L+ L +    L      L   +  P L+ ++++  QL  
Sbjct: 437 DVSNNNLDSFS-----LFLPRLQELYISRNKLKT----LPDASLFPVLLVMKISRNQLKS 487

Query: 238 FSLLATANFSSLTVLDLSDNQFD-----KWFIPSWV 268
                    +SL  + L  N +D       ++  W+
Sbjct: 488 VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 523

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.8 bits (127), Expect = 4e-07
 Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 788 EDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDF 847
             +   ++ +D+S N  +     ++     LQ L    +       ++   + SLE +D 
Sbjct: 22  SGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81

Query: 848 SANQLSGEIPESMSSLTFLNHLNLSNNNLT-----GKIPSSTQLQSFDVSSF 894
           S N LS         L+ L +LNL  N           P+ T LQ+  + + 
Sbjct: 82  SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNV 133

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  160 bits (406), Expect = 3e-42
 Identities = 108/526 (20%), Positives = 192/526 (36%), Gaps = 104/526 (19%)

Query: 117 PSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQF 176
            S  DL  ++ L        GI+       + NL  +N S  ++  + P  L NL+ L  
Sbjct: 40  VSQTDLDQVTTLQADRL---GIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVD 94

Query: 177 LDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLH 236
           + +++N +  +     L+ L+ L  L L +  ++     +     L +L  L L++  + 
Sbjct: 95  ILMNNNQIADITP---LANLTNLTGLTLFNNQITD----IDPLKNLTNLNRLELSSNTIS 147

Query: 237 HFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSI 296
             S L+    +SL  L   +   D             + L NLT+L  L + SN   S I
Sbjct: 148 DISALS--GLTSLQQLSFGNQVTD------------LKPLANLTTLERLDISSNKV-SDI 192

Query: 297 PNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNL 356
              L +  +LE L  +NN +    D   LG LT++  L L+ N  ++     ++ASL NL
Sbjct: 193 SV-LAKLTNLESLIATNNQIS---DITPLGILTNLDELSLNGNQ-LKD--IGTLASLTNL 245

Query: 357 KSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFAN 416
             L+L                     N + +L              L     +  L    
Sbjct: 246 TDLDLAN-------------------NQISNLA------------PLSGLTKLTELKLGA 274

Query: 417 NSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDW 476
           N I  + P  L  L+ L  L +N+N+L         +NL  L++  +  N ++       
Sbjct: 275 NQISNISP--LAGLTALTNLELNENQLEDI---SPISNLKNLTYLTLYFNNIS------D 323

Query: 477 IPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDL 536
           I P                      S   LQ L+  N+ +SD+  +  L +   + +L  
Sbjct: 324 ISPVS--------------------SLTKLQRLFFYNNKVSDVSSLANLTN---INWLSA 360

Query: 537 GQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYR 596
           G NQI   +  L   T +  L +     +       +N+   +   N+    I+P     
Sbjct: 361 GHNQISD-LTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPA---T 416

Query: 597 INETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLP 642
           I++  S     +  N  +    +   ++    T+      F+G + 
Sbjct: 417 ISDGGSYTEPDITWNLPS-YTNEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  155 bits (395), Expect = 1e-40
 Identities = 109/527 (20%), Positives = 207/527 (39%), Gaps = 89/527 (16%)

Query: 193 LSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVL 252
            + L+      L   N++      +    L  +  L+     +     +     ++LT +
Sbjct: 20  DTALAEKMKTVLGKTNVTD----TVSQTDLDQVTTLQADRLGIKSIDGVE--YLNNLTQI 73

Query: 253 DLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLS 312
           + S+NQ     I           L+NLT L  + +++N      P  L    +L  L+L 
Sbjct: 74  NFSNNQLTD--ITP---------LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLF 120

Query: 313 NNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISE 372
           NN +    D + L NLT+++ L+LS N      I   +++L  L   +L+ +    ++++
Sbjct: 121 NNQIT---DIDPLKNLTNLNRLELSSN-----TI-SDISALSGLT--SLQQLSFGNQVTD 169

Query: 373 ILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLST 432
           +  + +   +  LE LD+ S+ +       L +  N+ +L   NN I  + P  LG L+ 
Sbjct: 170 LKPL-ANLTT--LERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTN 222

Query: 433 LRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYV 492
           L  L +N N+L   +     A+LT L+   +  N+++       + P             
Sbjct: 223 LDELSLNGNQLKD-IGT--LASLTNLTDLDLANNQISN------LAPLS----------- 262

Query: 493 GSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFT 552
                        L  L L  + IS+I P+  L     L  L+L +NQ+   I  ++   
Sbjct: 263 ---------GLTKLTELKLGANQISNISPLAGLT---ALTNLELNENQLED-ISPISNLK 309

Query: 553 GLLILSVYSNNMSGPLPLIS-SNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDN 611
            L  L++Y NN+S   P+ S + L  L   NN  S  +S           ++N L    N
Sbjct: 310 NLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVS-DVSSL-----ANLTNINWLSAGHN 363

Query: 612 YLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKN 671
            ++   P   ++   +  L L++  +T        +++    +      L     +S  +
Sbjct: 364 QISDLTPLANLT--RITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATIS--D 419

Query: 672 CTALESLDVGENEFVGNIPTWIGE---RFSRMVVLILRSNKFHGPLP 715
             +    D+       N+P++  E    FS+ V +   +  F G + 
Sbjct: 420 GGSYTEPDIT-----WNLPSYTNEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  152 bits (386), Expect = 1e-39
 Identities = 105/518 (20%), Positives = 177/518 (34%), Gaps = 106/518 (20%)

Query: 220 NKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNL 279
             L   ++  L    +     ++  +   +T L                      G++ L
Sbjct: 21  TALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIKS-----------IDGVEYL 67

Query: 280 TSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLN 339
            +L  +   +N      P  L     L  + ++NN +    D   L NLT+++ L L  N
Sbjct: 68  NNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA---DITPLANLTNLTGLTLFNN 122

Query: 340 MGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHL 399
             I    P  + +L NL  L L    +S      +   SG  S  L+ L    + +    
Sbjct: 123 Q-ITDIDP--LKNLTNLNRLELSSNTISD-----ISALSGLTS--LQQLSF-GNQVTDLK 171

Query: 400 TDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLS 459
              L     +  LD ++N +  +    L +L+ L  L   +N+++          LT L 
Sbjct: 172 P--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDI---TPLGILTNLD 224

Query: 460 WFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDI 519
              ++GN+L        I                        S  +L  L L N+ IS++
Sbjct: 225 ELSLNGNQLKD------IGTLA--------------------SLTNLTDLDLANNQISNL 258

Query: 520 FPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLIS-SNLVFL 578
            P+  L     L  L LG NQI   I  L   T L  L +  N +    P+ +  NL +L
Sbjct: 259 APLSGLTK---LTELKLGANQISN-ISPLAGLTALTNLELNENQLEDISPISNLKNLTYL 314

Query: 579 DLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFT 638
            L  N             I++   +++L                    L+ L   NNK +
Sbjct: 315 TLYFN------------NISDISPVSSLT------------------KLQRLFFYNNKVS 344

Query: 639 GNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFS 698
                S+ +LT++ WL  G N++S   L  L N T +  L + +  +            +
Sbjct: 345 D--VSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPV----NYKA 396

Query: 699 RMVVLILRSNKFHGPL-PTGLCDLAFLQILDIADNNLS 735
            + +     N     + P  + D       DI  N  S
Sbjct: 397 NVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  142 bits (360), Expect = 3e-36
 Identities = 102/501 (20%), Positives = 172/501 (34%), Gaps = 104/501 (20%)

Query: 247 SSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHL 306
              +     D   ++ F               L       L   +   ++         +
Sbjct: 2   PLGSATITQDTPINQIF-----------TDTALAEKMKTVLGKTNVTDTVS--QTDLDQV 48

Query: 307 EYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHL 366
             L      ++     + +  L +++ ++ S N  +    P  + +L  L  + +    +
Sbjct: 49  TTLQADRLGIK---SIDGVEYLNNLTQINFSNN-QLTDITP--LKNLTKLVDILMNNNQI 102

Query: 367 SQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPES 426
           +      +   +   +  L  L L ++ I     D L    N+  L+ ++N+I  +   +
Sbjct: 103 AD-----ITPLANLTN--LTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISDI--SA 151

Query: 427 LGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALG 486
           L  L++L+ L   +   +        ANLT L    +  NK++       I         
Sbjct: 152 LSGLTSLQQLSFGNQVTD----LKPLANLTTLERLDISSNKVSD------ISVLA----K 197

Query: 487 LRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIP 546
           L N                L+ L   N+ ISDI P+  L +   L  L L  NQ+   I 
Sbjct: 198 LTN----------------LESLIATNNQISDITPLGILTN---LDELSLNGNQLKD-IG 237

Query: 547 NLTEFTGLLILSVYSNNMSGPLPLIS-SNLVFLDLSNNLFSGSISPFLCYRINETKSLNA 605
            L   T L  L + +N +S   PL   + L  L L  N  S +ISP     +    +L  
Sbjct: 238 TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQIS-NISP-----LAGLTALTN 291

Query: 606 LQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNI 665
           L+LN+N L    P   +   NL  L L  N  +   P S  SLT L  L    N++S   
Sbjct: 292 LELNENQLEDISPISNLK--NLTYLTLYFNNISDISPVS--SLTKLQRLFFYNNKVSD-- 345

Query: 666 LVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQ 725
           + SL N T +  L  G N+     P                           L +L  + 
Sbjct: 346 VSSLANLTNINWLSAGHNQISDLTP---------------------------LANLTRIT 378

Query: 726 ILDIADNNLSGAIPNCINNLT 746
            L + D   + A  N   N++
Sbjct: 379 QLGLNDQAWTNAPVNYKANVS 399

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  139 bits (353), Expect = 2e-35
 Identities = 109/512 (21%), Positives = 176/512 (34%), Gaps = 94/512 (18%)

Query: 373 ILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLST 432
           I  IF+           L   ++   ++        + TL      I  +  + +  L+ 
Sbjct: 14  INQIFTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNN 69

Query: 433 LRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPF----QLVALGLR 488
           L  +  ++N+L          NLTKL    ++ N++        I P      L  L L 
Sbjct: 70  LTQINFSNNQLT---DITPLKNLTKLVDILMNNNQIAD------ITPLANLTNLTGLTLF 120

Query: 489 NCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNL 548
           N  +    PL   +  +L  L L +++ISDI  +  L S   L+ L  G       +  L
Sbjct: 121 NNQITDIDPLK--NLTNLNRLELSSNTISDISALSGLTS---LQQLSFGNQVTD--LKPL 173

Query: 549 TEFTGLLILSVYSNNMSGPLPLIS-SNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQ 607
              T L  L + SN +S    L   +NL  L  +NN  S  I+P     +    +L+ L 
Sbjct: 174 ANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQIS-DITP-----LGILTNLDELS 227

Query: 608 LNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILV 667
           LN N L         S  NL  L L+NN+ +   P  +  LT L  L LG N++S   + 
Sbjct: 228 LNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN--IS 281

Query: 668 SLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQIL 727
            L   TAL +L++ EN+     P         +  L L  N      P  +  L  LQ L
Sbjct: 282 PLAGLTALTNLELNENQLEDISPI---SNLKNLTYLTLYFNNISDISP--VSSLTKLQRL 336

Query: 728 DIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDY 787
              +N +S    + + NLT                                         
Sbjct: 337 FFYNNKVSD--VSSLANLT----------------------------------------- 353

Query: 788 EDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDF 847
               N+   +    N  S   PL   NL  +  L  +  ++T         +    ++  
Sbjct: 354 ----NI-NWLSAGHNQISDLTPLA--NLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKN 406

Query: 848 SANQLSGEIPESMSSLTFLNHLNLSNNNLTGK 879
               L    P ++S        +++ N  +  
Sbjct: 407 VTGALI--APATISDGGSYTEPDITWNLPSYT 436

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  137 bits (348), Expect = 1e-34
 Identities = 97/478 (20%), Positives = 171/478 (35%), Gaps = 94/478 (19%)

Query: 416 NNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHD 475
           +  I  +       L+      +    +  T+S     +L +++  + D   +       
Sbjct: 11  DTPINQIFT--DTALAEKMKTVLGKTNVTDTVS---QTDLDQVTTLQADRLGIKS----- 60

Query: 476 WIPPFQ----LVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQL 531
            I   +    L  +   N  +    P  L +   L  + + N+ I+DI P+  L     L
Sbjct: 61  -IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLT---NL 114

Query: 532 KFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLIS-SNLVFLDLSNNLFSGSIS 590
             L L  NQI   I  L   T L  L + SN +S    L   ++L  L   N +    + 
Sbjct: 115 TGLTLFNNQITD-IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVT--DLK 171

Query: 591 PFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTS 650
           P     +    +L  L ++ N ++           NL++L  +NN+ +   P  +G LT+
Sbjct: 172 P-----LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTN 222

Query: 651 LVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKF 710
           L  L L  N+L    + +L + T L  LD+  N+     P       +++  L L +N+ 
Sbjct: 223 LDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPL---SGLTKLTELKLGANQI 277

Query: 711 HGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGV 770
                + L  L  L  L++ +N L    P  I+NL                         
Sbjct: 278 SN--ISPLAGLTALTNLELNENQLEDISP--ISNLK------------------------ 309

Query: 771 ILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTG 830
                                NL   + +  NN S   P+   +L  LQ L F  N  + 
Sbjct: 310 ---------------------NL-TYLTLYFNNISDISPVS--SLTKLQRLFFYNNKVSD 345

Query: 831 RIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSSTQLQS 888
               S+  + ++  +    NQ+S   P  +++LT +  L L++   T    +     S
Sbjct: 346 --VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVS 399

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  134 bits (339), Expect = 2e-33
 Identities = 96/572 (16%), Positives = 181/572 (31%), Gaps = 120/572 (20%)

Query: 311 LSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEI 370
             +  +           L       L     +   + ++   L  + +L    + +    
Sbjct: 9   TQDTPIN---QIFTDTALAEKMKTVLGKT-NVTDTVSQT--DLDQVTTLQADRLGIK--- 59

Query: 371 SEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQL 430
              +D      +  L  ++  ++ +       L     +V +   NN I  + P  L  L
Sbjct: 60  --SIDGVEYLNN--LTQINFSNNQLTDI--TPLKNLTKLVDILMNNNQIADITP--LANL 111

Query: 431 STLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNC 490
           + L  L + +N++          NLT L+   +  N ++       I        GL + 
Sbjct: 112 TNLTGLTLFNNQITDI---DPLKNLTNLNRLELSSNTISD------ISALS----GLTS- 157

Query: 491 YVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTE 550
                          LQ L   N  ++D+ P+  L +   L+ LD+  N++   I  L +
Sbjct: 158 ---------------LQQLSFGNQ-VTDLKPLANLTT---LERLDISSNKVSD-ISVLAK 197

Query: 551 FTGLLILSVYSNNMSGPLPLIS-SNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLN 609
            T L  L   +N +S   PL   +NL  L L+ N     I            +L  L L 
Sbjct: 198 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLK-DIGTL-----ASLTNLTDLDLA 251

Query: 610 DNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSL 669
           +N ++   P   ++   L  LKL  N+ +   P  +  LT+L  L L EN+L    +  +
Sbjct: 252 NNQISNLAPLSGLT--KLTELKLGANQISNISP--LAGLTALTNLELNENQLED--ISPI 305

Query: 670 KNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDI 729
            N   L  L +  N      P       +++  L   +NK      + L +L  +  L  
Sbjct: 306 SNLKNLTYLTLYFNNISDISPV---SSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSA 360

Query: 730 ADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYED 789
             N +S   P  + NLT                                           
Sbjct: 361 GHNQISDLTP--LANLT------------------------------------------- 375

Query: 790 ILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSA 849
              + + + ++   ++        N+    ++     +     P +I    S    D + 
Sbjct: 376 --RITQ-LGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI--APATISDGGSYTEPDITW 430

Query: 850 NQLSGEIPESMSSLTFLNHLNLSNNNLTGKIP 881
           N  S    E   + +    +       +G + 
Sbjct: 431 NLPS-YTNEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  121 bits (305), Expect = 4e-29
 Identities = 79/388 (20%), Positives = 146/388 (37%), Gaps = 57/388 (14%)

Query: 509 LYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPL 568
               ++ I+ IF    L    +     LG+  +   +   T+   +  L      +    
Sbjct: 7   TITQDTPINQIFTDTALA---EKMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSID 62

Query: 569 PLIS-SNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNL 627
            +   +NL  ++ SNN  +  I+P     +     L  + +N+N +    P   ++  NL
Sbjct: 63  GVEYLNNLTQINFSNNQLT-DITP-----LKNLTKLVDILMNNNQIADITPLANLT--NL 114

Query: 628 KTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVG 687
             L L NN+ T      + +LT+L  L L  N +S   + +L   T+L+ L  G N+   
Sbjct: 115 TGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFG-NQVTD 169

Query: 688 NIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTG 747
             P       + +  L + SNK      + L  L  L+ L   +N +S   P  +  LT 
Sbjct: 170 LKPL---ANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTN 222

Query: 748 MVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGK 807
           +                 + +    ++    ++          L  +  +D++ N  S  
Sbjct: 223 LDE---------------LSLNGNQLKDIGTLAS---------LTNLTDLDLANNQISNL 258

Query: 808 IPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLN 867
            PL    L  L  L    N  +      +  + +L +++ + NQL       +S+L  L 
Sbjct: 259 APLS--GLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLT 312

Query: 868 HLNLSNNNLTGKIPSS--TQLQSFDVSS 893
           +L L  NN++   P S  T+LQ     +
Sbjct: 313 YLTLYFNNISDISPVSSLTKLQRLFFYN 340

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  144 bits (367), Expect = 5e-38
 Identities = 72/353 (20%), Positives = 130/353 (36%), Gaps = 44/353 (12%)

Query: 117 PSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQF 176
            +  +L+ ++ L ++      IQ       + NL YLNL+  +I  + P  L NL  L  
Sbjct: 38  VTQEELESITKLVVAGEKVASIQ---GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTN 92

Query: 177 LDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLH 236
           L + +N +  +        L+ L  L L   N+S     +     L  +  L L      
Sbjct: 93  LYIGTNKITDISAL---QNLTNLRELYLNEDNISD----ISPLANLTKMYSLNLGANHNL 145

Query: 237 HFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSI 296
              L   +N + L  L +++++             +   + NLT L  L L+ N      
Sbjct: 146 S-DLSPLSNMTGLNYLTVTESKVKD----------VT-PIANLTDLYSLSLNYNQIEDIS 193

Query: 297 PNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNL 356
           P  L     L Y +   N +    D   + N+T ++ L +  N  I    P  +A+L  L
Sbjct: 194 P--LASLTSLHYFTAYVNQIT---DITPVANMTRLNSLKIGNN-KITDLSP--LANLSQL 245

Query: 357 KSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFAN 416
             L +    +S      ++         L+ L++ S+ I       L     + +L   N
Sbjct: 246 TWLEIGTNQISD-----INAVKDLTK--LKMLNVGSNQISD--ISVLNNLSQLNSLFLNN 296

Query: 417 NSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLT 469
           N +     E +G L+ L  L ++ N +         A+L+K+         + 
Sbjct: 297 NQLGNEDMEVIGGLTNLTTLFLSQNHIT---DIRPLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  138 bits (350), Expect = 7e-36
 Identities = 77/437 (17%), Positives = 147/437 (33%), Gaps = 95/437 (21%)

Query: 249 LTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEY 308
              L       ++ F              +L       L        +         +  
Sbjct: 2   AATLATLPAPINQIF-----------PDADLAEGIRAVLQKASVTDVVT--QEELESITK 48

Query: 309 LSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQ 368
           L ++   +      + +  LT++ +L+L+ N  I    P  +++L  L +L +       
Sbjct: 49  LVVAGEKVA---SIQGIEYLTNLEYLNLNGN-QITDISP--LSNLVKLTNLYIG------ 96

Query: 369 EISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLG 428
                        +N +  +              L    N+  L    ++I  + P  L 
Sbjct: 97  -------------TNKITDIS------------ALQNLTNLRELYLNEDNISDISP--LA 129

Query: 429 QLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLR 488
            L+ +  L +  N     LS +  +N+T L++  V  +K+        + P       L 
Sbjct: 130 NLTKMYSLNLGANHNLSDLSPL--SNMTGLNYLTVTESKVKD------VTPIA----NLT 177

Query: 489 NCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNL 548
           +                L  L L  + I DI P+  L     L +     NQI   I  +
Sbjct: 178 D----------------LYSLSLNYNQIEDISPLASLT---SLHYFTAYVNQITD-ITPV 217

Query: 549 TEFTGLLILSVYSNNMSGPLPLIS-SNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQ 607
              T L  L + +N ++   PL + S L +L++  N  S  I+        +   L  L 
Sbjct: 218 ANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQIS-DINAV-----KDLTKLKMLN 271

Query: 608 LNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILV 667
           +  N ++        +   L +L L+NN+        +G LT+L  L L +N ++   + 
Sbjct: 272 VGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD--IR 327

Query: 668 SLKNCTALESLDVGENE 684
            L + + ++S D     
Sbjct: 328 PLASLSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  138 bits (349), Expect = 1e-35
 Identities = 76/417 (18%), Positives = 153/417 (36%), Gaps = 73/417 (17%)

Query: 125 LSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYL 184
            + L         I        +       L +  +  ++      L ++  L ++   +
Sbjct: 2   AATLATLPAPINQIF---PDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV 56

Query: 185 LYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATA 244
             +     +  L+ LE+L+L    ++     +   + L  L  L +   ++   S L   
Sbjct: 57  ASIQG---IEYLTNLEYLNLNGNQITD----ISPLSNLVKLTNLYIGTNKITDISAL--Q 107

Query: 245 NFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFI 304
           N ++L  L L+++      I           L NLT +  L L +NH  S +   L    
Sbjct: 108 NLTNLRELYLNEDNISD--ISP---------LANLTKMYSLNLGANHNLSDLSP-LSNMT 155

Query: 305 HLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGV 364
            L YL+++ + ++   D   + NLT +  L L+ N  IE   P  +ASL +L        
Sbjct: 156 GLNYLTVTESKVK---DVTPIANLTDLYSLSLNYNQ-IEDISP--LASLTSLHYFTAYVN 209

Query: 365 HLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIP 424
            ++      +   +      L SL + ++ I       L     +  L+   N I  +  
Sbjct: 210 QITD-----ITPVANMTR--LNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQISDI-- 258

Query: 425 ESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVA 484
            ++  L+ L++L +  N+++  +S +   NL++L+   ++ N+L             +  
Sbjct: 259 NAVKDLTKLKMLNVGSNQISD-ISVL--NNLSQLNSLFLNNNQLG------NEDMEVIGG 309

Query: 485 LGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQI 541
           L                   +L  L+L  + I+DI P+  L    ++   D     I
Sbjct: 310 L------------------TNLTTLFLSQNHITDIRPLASLS---KMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  131 bits (331), Expect = 2e-33
 Identities = 90/468 (19%), Positives = 164/468 (35%), Gaps = 126/468 (26%)

Query: 411 TLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTL 470
           TL      I  + P     L+      +    +      +    L  ++   V G K+  
Sbjct: 4   TLATLPAPINQIFP--DADLAEGIRAVLQKASVTDV---VTQEELESITKLVVAGEKVAS 58

Query: 471 GVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQ 530
                 I   + +                     +L++L L  + I+DI P+  L    +
Sbjct: 59  ------IQGIEYL--------------------TNLEYLNLNGNQITDISPLSNLV---K 89

Query: 531 LKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLIS-SNLVFLDLSNNLFSGSI 589
           L  L +G N+I   I  L   T L  L +  +N+S   PL + + +  L+L  N     +
Sbjct: 90  LTNLYIGTNKITD-ISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDL 148

Query: 590 SPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLT 649
           SP     ++    LN L + ++ +    P   ++  +L +L L+ N+     P  + SLT
Sbjct: 149 SP-----LSNMTGLNYLTVTESKVKDVTPIANLT--DLYSLSLNYNQIEDISP--LASLT 199

Query: 650 SLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNK 709
           SL +     N+++   +  + N T L SL +G N+                         
Sbjct: 200 SLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITD---------------------- 235

Query: 710 FHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVG 769
                 + L +L+ L  L+I  N +S    N + +LT                       
Sbjct: 236 -----LSPLANLSQLTWLEIGTNQISD--INAVKDLT----------------------- 265

Query: 770 VILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFT 829
                                  L +M+++  N  S    L   NL  L SL  + N   
Sbjct: 266 ----------------------KL-KMLNVGSNQISDISVLN--NLSQLNSLFLNNNQLG 300

Query: 830 GRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLT 877
               E IG + +L ++  S N ++   P  ++SL+ ++  + +N  + 
Sbjct: 301 NEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  131 bits (331), Expect = 3e-33
 Identities = 82/415 (19%), Positives = 149/415 (35%), Gaps = 71/415 (17%)

Query: 225 LVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRH 284
              L      ++     A  + +      L                      + L S+  
Sbjct: 2   AATLATLPAPINQIFPDA--DLAEGIRAVLQKASVTD-----------VVTQEELESITK 48

Query: 285 LGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEG 344
           L +      +SI   +    +LEYL+L+ N +    D   L NL  ++ L +  N   + 
Sbjct: 49  LVVAGEKV-ASIQG-IEYLTNLEYLNLNGNQIT---DISPLSNLVKLTNLYIGTN---KI 100

Query: 345 RIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLG 404
               ++ +L NL+ L L   ++S      +   +      + SL+L ++     L+  L 
Sbjct: 101 TDISALQNLTNLRELYLNEDNISD-----ISPLANLTK--MYSLNLGANHNLSDLSP-LS 152

Query: 405 QFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVD 464
               +  L    + +  + P  +  L+ L  L +N N++         A+LT L +F   
Sbjct: 153 NMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE---DISPLASLTSLHYFTAY 207

Query: 465 GNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRF 524
            N++T       I P       +                  L  L + N+ I+D+ P+  
Sbjct: 208 VNQIT------DITPVA----NMTR----------------LNSLKIGNNKITDLSPLAN 241

Query: 525 LKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLIS-SNLVFLDLSNN 583
           L     L +L++G NQI   I  + + T L +L+V SN +S    L + S L  L L+NN
Sbjct: 242 LSQ---LTWLEIGTNQISD-INAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNN 297

Query: 584 LFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFT 638
                    +        +L  L L+ N++    P    S   + +   +N    
Sbjct: 298 QLGNEDMEVIG----GLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  126 bits (320), Expect = 6e-32
 Identities = 75/415 (18%), Positives = 145/415 (34%), Gaps = 77/415 (18%)

Query: 482 LVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQI 541
              L      +   FP             L  +S++D+     L+    +  L +   ++
Sbjct: 2   AATLATLPAPINQIFPD--ADLAEGIRAVLQKASVTDVVTQEELE---SITKLVVAGEKV 56

Query: 542 HGPIPNLTEFTGLLILSVYSNNMSGPLPLIS-SNLVFLDLSNNLFSGSISPFLCYRINET 600
              I  +   T L  L++  N ++   PL +   L  L +  N  +  IS          
Sbjct: 57  AS-IQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKIT-DISAL-----QNL 109

Query: 601 KSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENR 660
            +L  L LN++ ++        +   + +L L  N    +L   + ++T L +L + E++
Sbjct: 110 TNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESK 166

Query: 661 LSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCD 720
           +    +  + N T L SL +  N+     P       + +       N+      T + +
Sbjct: 167 VKD--VTPIANLTDLYSLSLNYNQIEDISPL---ASLTSLHYFTAYVNQITDI--TPVAN 219

Query: 721 LAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVS 780
           +  L  L I +N ++   P  + NL+                                  
Sbjct: 220 MTRLNSLKIGNNKITDLSP--LANLS---------------------------------- 243

Query: 781 KGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMR 840
                       L   ++I  N  S    ++  +L  L+ LN   N  +      +  + 
Sbjct: 244 -----------QL-TWLEIGTNQISDINAVK--DLTKLKMLNVGSNQISD--ISVLNNLS 287

Query: 841 SLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSS--TQLQSFDVSS 893
            L S+  + NQL  E  E +  LT L  L LS N++T   P +  +++ S D ++
Sbjct: 288 QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFAN 342

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  114 bits (287), Expect = 1e-27
 Identities = 62/252 (24%), Positives = 107/252 (42%), Gaps = 30/252 (11%)

Query: 117 PSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQF 176
             L +L  +  L+L  N    +       +M  L YL ++ +++  + P  + NL++L  
Sbjct: 126 SPLANLTKMYSLNLGAN--HNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYS 181

Query: 177 LDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLH 236
           L L+ N +  +     L+ L+ L +       ++     +     +  L  L++ N ++ 
Sbjct: 182 LSLNYNQIEDISP---LASLTSLHYFTAYVNQITD----ITPVANMTRLNSLKIGNNKIT 234

Query: 237 HFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSI 296
             S LA  N S LT L++  NQ                 +++LT L+ L + SN   S I
Sbjct: 235 DLSPLA--NLSQLTWLEIGTNQISD-----------INAVKDLTKLKMLNVGSNQI-SDI 280

Query: 297 PNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNL 356
              L     L  L L+NN L    D E +G LT+++ L LS N  I    P  +ASL  +
Sbjct: 281 SV-LNNLSQLNSLFLNNNQLGN-EDMEVIGGLTNLTTLFLSQNH-ITDIRP--LASLSKM 335

Query: 357 KSLNLRGVHLSQ 368
            S +     + +
Sbjct: 336 DSADFANQVIKK 347

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  136 bits (344), Expect = 4e-34
 Identities = 70/331 (21%), Positives = 122/331 (36%), Gaps = 52/331 (15%)

Query: 118 SLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFL 177
                 HL  L+L+ N    ++ P  F ++ NLR L L   R+  +       LSNL  L
Sbjct: 51  EFASFPHLEELELNENIVSAVE-PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL 109

Query: 178 DLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSK----AFDWLMVTNKLPSLVELRLANC 233
           D+S N ++ + ++     L  L+ L++   +L      AF        L SL +L L  C
Sbjct: 110 DISENKIVILLDY-MFQDLYNLKSLEVGDNDLVYISHRAFS------GLNSLEQLTLEKC 162

Query: 234 QLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFN 293
            L      A ++   L VL L     +   I  + F       + L  L+ L +    + 
Sbjct: 163 NLTSIPTEALSHLHGLIVLRLRHLNINA--IRDYSF-------KRLYRLKVLEISHWPYL 213

Query: 294 SSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASL 353
            ++       ++L  LS+++ +L   +   A+ +L  + +L+LS N  I       +  L
Sbjct: 214 DTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNP-ISTIEGSMLHEL 271

Query: 354 CNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLD 413
             L+ + L G  L+  +      F G     L  L++                       
Sbjct: 272 LRLQEIQLVGGQLA-VVEP--YAFRGLNY--LRVLNVS---------------------- 304

Query: 414 FANNSIVGLIPESLGQLSTLRVLRINDNKLN 444
              N +  L       +  L  L ++ N L 
Sbjct: 305 --GNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  136 bits (343), Expect = 6e-34
 Identities = 69/345 (20%), Positives = 120/345 (34%), Gaps = 45/345 (13%)

Query: 124 HLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNY 183
               LDL  N  + +     F S  +L  L L+   +  + P    NL NL+ L L SN 
Sbjct: 33  ETRLLDLGKNRIKTLN-QDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 184 LLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLAT 243
           L  +                         F        L +L +L ++  ++        
Sbjct: 92  LKLIPL---------------------GVFT------GLSNLTKLDISENKIVILLDYMF 124

Query: 244 ANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRF 303
            +  +L  L++ DN      I    F         L SL  L L+  +  S     L   
Sbjct: 125 QDLYNLKSLEVGDNDLVY--ISHRAF-------SGLNSLEQLTLEKCNLTSIPTEALSHL 175

Query: 304 IHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRG 363
             L  L L + ++   I   +   L  +  L++S    ++  +  +     NL SL++  
Sbjct: 176 HGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLD-TMTPNCLYGLNLTSLSITH 233

Query: 364 VHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLI 423
            +L+  +          V   L  L+L  + I       L +   +  +      +  + 
Sbjct: 234 CNLT-AVPY--LAVRHLVY--LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVE 288

Query: 424 PESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKL 468
           P +   L+ LRVL ++ N+L  TL    F ++  L    +D N L
Sbjct: 289 PYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  111 bits (280), Expect = 7e-26
 Identities = 57/337 (16%), Positives = 115/337 (34%), Gaps = 52/337 (15%)

Query: 223 PSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGP----------- 271
                L L   ++   +    A+F  L  L+L++N      +    F             
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS--AVEPGAFNNLFNLRTLGLRS 89

Query: 272 -----IPRG-LQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEAL 325
                IP G    L++L  L +  N     +        +L+ L + +N L   I   A 
Sbjct: 90  NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAF 148

Query: 326 GNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGL 385
             L S+  L L     +      +++ L  L  L LR ++++  I +    F       L
Sbjct: 149 SGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNIN-AIRD--YSFKRLYR--L 202

Query: 386 ESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNG 445
           + L++        +T       N+ +L   + ++  +   ++  L  LR L ++ N ++ 
Sbjct: 203 KVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS- 261

Query: 446 TLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKH 505
           T+       L +L   ++ G +L        + P+    L                   +
Sbjct: 262 TIEGSMLHELLRLQEIQLVGGQLA------VVEPYAFRGL------------------NY 297

Query: 506 LQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIH 542
           L+ L +  + ++ +       S   L+ L L  N + 
Sbjct: 298 LRVLNVSGNQLTTL-EESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  108 bits (271), Expect = 9e-25
 Identities = 81/388 (20%), Positives = 136/388 (35%), Gaps = 66/388 (17%)

Query: 227 ELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLG 286
           + R   C    F  +     +   +LDL  N+     +    F        +   L  L 
Sbjct: 12  QDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKT--LNQDEF-------ASFPHLEELE 62

Query: 287 LDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRI 346
           L+ N  ++  P       +L  L L +N L+  I       L++++ LD+S N  I   +
Sbjct: 63  LNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENK-IVILL 120

Query: 347 PRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQF 406
                 L NLKSL +    L   IS     FSG  S  LE L L   ++    T+ L   
Sbjct: 121 DYMFQDLYNLKSLEVGDNDLV-YISH--RAFSGLNS--LEQLTLEKCNLTSIPTEALSHL 175

Query: 407 KNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGN 466
             ++ L   + +I  +   S  +L  L+VL I+      T++      L  L+   +   
Sbjct: 176 HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN-LTSLSITHC 234

Query: 467 KLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLK 526
            LT       +P   +  L                   +L+FL L  + IS I       
Sbjct: 235 NLT------AVPYLAVRHL------------------VYLRFLNLSYNPISTIEGSML-H 269

Query: 527 SASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFS 586
              +L+ + L   Q+   +     F GL                  + L  L++S N  +
Sbjct: 270 ELLRLQEIQLVGGQLAV-VEPYA-FRGL------------------NYLRVLNVSGNQLT 309

Query: 587 GSISPFLCYRINETKSLNALQLNDNYLN 614
            ++   +    +   +L  L L+ N L 
Sbjct: 310 -TLEESVF---HSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  105 bits (263), Expect = 9e-24
 Identities = 60/330 (18%), Positives = 112/330 (33%), Gaps = 51/330 (15%)

Query: 406 FKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDG 465
                 LD   N I  L  +       L  L +N+N +   +    F NL  L    +  
Sbjct: 31  PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV-SAVEPGAFNNLFNLRTLGLRS 89

Query: 466 NKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFL 525
           N+L L      IP      L                   +L  L +  + I  +    F 
Sbjct: 90  NRLKL------IPLGVFTGL------------------SNLTKLDISENKIVILLDYMF- 124

Query: 526 KSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLF 585
           +    LK L++G N +   I +   F+GL                  ++L  L L     
Sbjct: 125 QDLYNLKSLEVGDNDLVY-ISHRA-FSGL------------------NSLEQLTLEKCNL 164

Query: 586 SGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSM 645
           + SI       ++    L  L+L    +N      +     LK L++S+  +   +  + 
Sbjct: 165 T-SIPTEA---LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC 220

Query: 646 GSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLIL 705
               +L  L +    L+    +++++   L  L++  N     I   +     R+  + L
Sbjct: 221 LYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQL 279

Query: 706 RSNKFHGPLPTGLCDLAFLQILDIADNNLS 735
              +     P     L +L++L+++ N L+
Sbjct: 280 VGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 90.9 bits (226), Expect = 3e-19
 Identities = 67/373 (17%), Positives = 114/373 (30%), Gaps = 74/373 (19%)

Query: 505 HLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNM 564
             + L L  + I  +    F  S   L+ L+L +N +   +     F  L          
Sbjct: 33  ETRLLDLGKNRIKTLNQDEF-ASFPHLEELELNENIVSA-VEPGA-FNNL---------- 79

Query: 565 SGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSY 624
                    NL  L L +N     I   +        +L  L +++N +   L   +   
Sbjct: 80  --------FNLRTLGLRSNRLK-LIPLGV---FTGLSNLTKLDISENKIVILLDYMFQDL 127

Query: 625 QNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENE 684
            NLK+L++ +N        +   L SL  L L +  L+     +L +   L  L +    
Sbjct: 128 YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN 187

Query: 685 FVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINN 744
               I  +  +R  R+ VL +    +   +         L  L I   NL+      + +
Sbjct: 188 IN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH 246

Query: 745 LTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNF 804
           L                                               L R +++S N  
Sbjct: 247 LV---------------------------------------------YL-RFLNLSYNPI 260

Query: 805 SGKIPLEV-TNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSL 863
           S  I   +   L  LQ +           P +   +  L  ++ S NQL+        S+
Sbjct: 261 S-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSV 319

Query: 864 TFLNHLNLSNNNL 876
             L  L L +N L
Sbjct: 320 GNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 89.4 bits (222), Expect = 1e-18
 Identities = 72/313 (23%), Positives = 124/313 (39%), Gaps = 39/313 (12%)

Query: 571 ISSNLVFLDLSNNLFSGSISP--FLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLK 628
           I +    LDL  N    +++   F  +       L  L+LN+N ++   P  + +  NL+
Sbjct: 30  IPTETRLLDLGKNRIK-TLNQDEFASFP-----HLEELELNENIVSAVEPGAFNNLFNLR 83

Query: 629 TLKLSNNKFTGNLPYSM-GSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVG 687
           TL L +N+    +P  +   L++L  L + EN++   +    ++   L+SL+VG+N+ V 
Sbjct: 84  TLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV- 141

Query: 688 NIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTG 747
            I        + +  L L            L  L  L +L +   N++            
Sbjct: 142 YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN------------ 189

Query: 748 MVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGK 807
            +   SF + + +   L I     L         G        LNL   + I+  N +  
Sbjct: 190 AIRDYSF-KRLYRLKVLEISHWPYLDTMTPNCLYG--------LNL-TSLSITHCNLT-A 238

Query: 808 IPLEV-TNLKALQSLNFSYNSFTGRIPESI-GVMRSLESIDFSANQLSGEIPESM-SSLT 864
           +P     +L  L+ LN SYN  +  I  S+   +  L+ I     QL+  +       L 
Sbjct: 239 VPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLN 296

Query: 865 FLNHLNLSNNNLT 877
           +L  LN+S N LT
Sbjct: 297 YLRVLNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 68.2 bits (167), Expect = 5e-12
 Identities = 45/260 (17%), Positives = 79/260 (30%), Gaps = 50/260 (19%)

Query: 626 NLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEF 685
             + L L  N+          S   L  L L EN +S     +  N   L +L +  N  
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92

Query: 686 VGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNL 745
              IP  +    S +  L +  NK    L     DL  L+ L++ DN+L        + L
Sbjct: 93  K-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGL 151

Query: 746 TGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFS 805
             +                                                + + + N +
Sbjct: 152 NSLEQ----------------------------------------------LTLEKCNLT 165

Query: 806 GKIPLEV-TNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLT 864
             IP E  ++L  L  L   + +       S   +  L+ ++ S       +  +     
Sbjct: 166 -SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL 224

Query: 865 FLNHLNLSNNNLTGKIPSST 884
            L  L++++ NLT  +P   
Sbjct: 225 NLTSLSITHCNLT-AVPYLA 243

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 40/190 (21%), Positives = 58/190 (30%), Gaps = 51/190 (26%)

Query: 697 FSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTR 756
            +   +L L  N+              L+ L++ +N +S   P   NNL           
Sbjct: 31  PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLF---------- 80

Query: 757 SVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEV-TNL 815
                                              NL R + +  N     IPL V T L
Sbjct: 81  -----------------------------------NL-RTLGLRSNRLK-LIPLGVFTGL 103

Query: 816 KALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESM-SSLTFLNHLNLSNN 874
             L  L+ S N     +      + +L+S++   N L   I     S L  L  L L   
Sbjct: 104 SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKC 162

Query: 875 NLTGKIPSST 884
           NLT  IP+  
Sbjct: 163 NLT-SIPTEA 171

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  132 bits (335), Expect = 1e-33
 Identities = 61/358 (17%), Positives = 115/358 (32%), Gaps = 47/358 (13%)

Query: 116 NPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQ 175
               + L +   +    +  + +       S   +  LNL+  +I  +  +       +Q
Sbjct: 38  GFEDITLNNQKIVTFKNSTMRKLP-AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQ 96

Query: 176 FLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLS----KAFDWLMVTNKLPSLVELRLA 231
            L +  N + Y+        +  L  L L   +LS      F      +  P L  L ++
Sbjct: 97  KLYMGFNAIRYLPPH-VFQNVPLLTVLVLERNDLSSLPRGIF------HNTPKLTTLSMS 149

Query: 232 NCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNH 291
           N  L           +SL  L LS N+             +      + SL H  +  N 
Sbjct: 150 NNNLERIEDDTFQATTSLQNLQLSSNRLTH----------VDLS--LIPSLFHANVSYNL 197

Query: 292 FNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMA 351
            ++     L   I +E L  S+NS+   +       LT    L L  N   +      + 
Sbjct: 198 LST-----LAIPIAVEELDASHNSIN-VVRGPVNVELTI---LKLQHNNLTD---TAWLL 245

Query: 352 SLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVT 411
           +   L  ++L    L  +I      F       LE L + ++ +   L         +  
Sbjct: 246 NYPGLVEVDLSYNELE-KIMY--HPFVKMQR--LERLYISNNRL-VALNLYGQPIPTLKV 299

Query: 412 LDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLT 469
           LD ++N ++  +  +  Q   L  L ++ N     +  +  +    L    +  N   
Sbjct: 300 LDLSHNHLLH-VERNQPQFDRLENLYLDHNS----IVTLKLSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  128 bits (324), Expect = 5e-32
 Identities = 69/346 (19%), Positives = 122/346 (35%), Gaps = 46/346 (13%)

Query: 118 SLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFL 177
            L   + +  L+L+    + I     F     ++ L +    I  + PH   N+  L  L
Sbjct: 64  LLDSFRQVELLNLNDLQIEEID-TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122

Query: 178 DLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSK----AFDWLMVTNKLPSLVELRLANC 233
            L  N L  +           L  L + + NL +     F          SL  L+L++ 
Sbjct: 123 VLERNDLSSLPRG-IFHNTPKLTTLSMSNNNLERIEDDTFQ------ATTSLQNLQLSSN 175

Query: 234 QLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFN 293
           +L H  L   +   SL   ++S N                  L    ++  L    N   
Sbjct: 176 RLTHVDL---SLIPSLFHANVSYNLLST--------------LAIPIAVEELDASHNSI- 217

Query: 294 SSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASL 353
           + +   +   + L  L L +N+L    D+  L N   +  +DLS N  +E  +      +
Sbjct: 218 NVVRGPV--NVELTILKLQHNNL---TDTAWLLNYPGLVEVDLSYNE-LEKIMYHPFVKM 271

Query: 354 CNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLD 413
             L+ L +        +  +        +  L+ LDL  + +  H+     QF  +  L 
Sbjct: 272 QRLERLYISN----NRLVALNLYGQPIPT--LKVLDLSHNHLL-HVERNQPQFDRLENLY 324

Query: 414 FANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLS 459
             +NSIV L    L    TL+ L ++ N  +       F N+ + +
Sbjct: 325 LDHNSIVTL---KLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPA 367

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  118 bits (297), Expect = 1e-28
 Identities = 61/417 (14%), Positives = 137/417 (32%), Gaps = 75/417 (17%)

Query: 272 IPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSI 331
           I   LQ       + +D    +           + + ++  N++++  + +  L +   +
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 71

Query: 332 SWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLR 391
             L+L+    IE     + A    ++ L +    +   +     +F       L  L L 
Sbjct: 72  ELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPP--HVFQNVPL--LTVLVLE 125

Query: 392 SDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIH 451
            + +             + TL  +NN++  +  ++    ++L+ L+++ N+    L+ + 
Sbjct: 126 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR----LTHVD 181

Query: 452 FANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYL 511
            + +  L    V  N L+                              L     ++ L  
Sbjct: 182 LSLIPSLFHANVSYNLLST-----------------------------LAIPIAVEELDA 212

Query: 512 VNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLI 571
            ++SI+ +          +L  L L  N +      L  + GL+ + +  N +       
Sbjct: 213 SHNSINVVRGPVN----VELTILKLQHNNLT-DTAWLLNYPGLVEVDLSYNELE------ 261

Query: 572 SSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLK 631
                   +  + F               + L  L +++N L   L         LK L 
Sbjct: 262 -------KIMYHPFVK------------MQRLERLYISNNRLV-ALNLYGQPIPTLKVLD 301

Query: 632 LSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGN 688
           LS+N    ++  +      L  L+L  N +     + L     L++L +  N++  N
Sbjct: 302 LSHNHLL-HVERNQPQFDRLENLYLDHNSIVT---LKLSTHHTLKNLTLSHNDWDCN 354

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  110 bits (278), Expect = 4e-26
 Identities = 68/396 (17%), Positives = 141/396 (35%), Gaps = 46/396 (11%)

Query: 341 GIEGRIPRSMASLCNLKSLN-LRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHL 399
            ++ R P       NL+       VH+  +  ++   F     N  + +  ++ ++    
Sbjct: 2   NVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLP 61

Query: 400 TDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLS 459
              L  F+ +  L+  +  I  +   +     T++ L +  N +   L    F N+  L+
Sbjct: 62  AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLT 120

Query: 460 WFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDI 519
              ++ N L+       +P                           L  L + N+++  I
Sbjct: 121 VLVLERNDLSS------LPRGIFHNT------------------PKLTTLSMSNNNLERI 156

Query: 520 FPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLD 579
                 ++ + L+ L L  N++   +  L+    L   +V  N +S     I   +  LD
Sbjct: 157 -EDDTFQATTSLQNLQLSSNRLTH-VD-LSLIPSLFHANVSYNLLSTLAIPI--AVEELD 211

Query: 580 LSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTG 639
            S+N  +  +   +         L  L+L  N L  +     ++Y  L  + LS N+   
Sbjct: 212 ASHNSIN-VVRGPVN------VELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEK 262

Query: 640 NLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSR 699
            + +    +  L  L++  NRL   + +  +    L+ LD+  N  + ++     + F R
Sbjct: 263 IMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQ-FDR 319

Query: 700 MVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLS 735
           +  L L  N     L         L+ L ++ N+  
Sbjct: 320 LENLYLDHNSIV-TLKLST--HHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 95.5 bits (238), Expect = 5e-21
 Identities = 69/390 (17%), Positives = 120/390 (30%), Gaps = 98/390 (25%)

Query: 504 KHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNN 563
            + + +   NS++  + P   L S  Q++ L+L   QI   I     F            
Sbjct: 45  NNQKIVTFKNSTMRKL-PAALLDSFRQVELLNLNDLQIEE-IDTYA-FAYA--------- 92

Query: 564 MSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMS 623
                      +  L +  N     + P +         L  L L  N L+      + +
Sbjct: 93  ---------HTIQKLYMGFNAIR-YLPPHV---FQNVPLLTVLVLERNDLSSLPRGIFHN 139

Query: 624 YQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENR----------------LSGNILV 667
              L TL +SNN        +  + TSL  L L  NR                +S N+L 
Sbjct: 140 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLS 199

Query: 668 SLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQIL 727
           +L    A+E LD   N    +I    G     + +L L+ N         L +   L  +
Sbjct: 200 TLAIPIAVEELDASHN----SINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEV 253

Query: 728 DIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDY 787
           D++ N L   + +    +  +                                       
Sbjct: 254 DLSYNELEKIMYHPFVKMQRL--------------------------------------- 274

Query: 788 EDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDF 847
                    + IS N     + L    +  L+ L+ S+N     +  +      LE++  
Sbjct: 275 -------ERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL 325

Query: 848 SANQLSGEIPESMSSLTFLNHLNLSNNNLT 877
             N +   +    S+   L +L LS+N+  
Sbjct: 326 DHNSIV-TLKL--STHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 86.6 bits (215), Expect = 4e-18
 Identities = 61/405 (15%), Positives = 127/405 (31%), Gaps = 79/405 (19%)

Query: 512 VNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLI 571
           ++    D++      + +  K +    + +   +P                         
Sbjct: 28  IDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK-LPAAL-LDSF----------------- 68

Query: 572 SSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLK 631
              +  L+L++      I  +         ++  L +  N +    P  + +   L  L 
Sbjct: 69  -RQVELLNLNDLQIE-EIDTYA---FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123

Query: 632 LSNNKFTGNLPYSM-GSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIP 690
           L  N  + +LP  +  +   L  L +  N L      + +  T+L++L +  N    ++ 
Sbjct: 124 LERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD 181

Query: 691 TWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVT 750
                    +    +  N       + L     ++ LD + N+++         LT    
Sbjct: 182 L---SLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSINVVRGPVNVELT---- 229

Query: 751 ACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLV--RMIDISRNNFSGKI 808
                      L L                   + D   +LN      +D+S N    KI
Sbjct: 230 ----------ILKL---------------QHNNLTDTAWLLNYPGLVEVDLSYNELE-KI 263

Query: 809 PLEV-TNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLN 867
                  ++ L+ L  S N     +      + +L+ +D S N L   +  +      L 
Sbjct: 264 MYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLE 321

Query: 868 HLNLSNNNLTGKIPSST--QLQSFDVSSFAGNDL---CGAPLPKN 907
           +L L +N++   +  ST   L++  +S    ND        L +N
Sbjct: 322 NLYLDHNSIV-TLKLSTHHTLKNLTLS---HNDWDCNSLRALFRN 362

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 73.5 bits (181), Expect = 7e-14
 Identities = 57/356 (16%), Positives = 103/356 (28%), Gaps = 67/356 (18%)

Query: 541 IHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINET 600
           I   +     F  + I     +   G   +  +N   +   N+     +   L   ++  
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAAL---LDSF 68

Query: 601 KSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENR 660
           + +  L LND  +       +     ++ L +  N      P+   ++  L  L L  N 
Sbjct: 69  RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND 128

Query: 661 LSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCD 720
           LS        N   L +L +  N     I     +  + +  L L SN+    +   L  
Sbjct: 129 LSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTH-VDLSL-- 184

Query: 721 LAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVS 780
           +  L   +++ N LS  +   I                                      
Sbjct: 185 IPSLFHANVSYNLLS-TLAIPIA------------------------------------- 206

Query: 781 KGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMR 840
                        V  +D S N+ +    +       L  L   +N+ T      +    
Sbjct: 207 -------------VEELDASHNSINV---VRGPVNVELTILKLQHNNLTD--TAWLLNYP 248

Query: 841 SLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLT---GKIPSSTQLQSFDVSS 893
            L  +D S N+L   +      +  L  L +SNN L            L+  D+S 
Sbjct: 249 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSH 304

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  133 bits (337), Expect = 3e-33
 Identities = 70/517 (13%), Positives = 158/517 (30%), Gaps = 48/517 (9%)

Query: 120 LDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDL 179
            +        ++ +  +         S  N++ L+LS   +  +    L   + L+ L+L
Sbjct: 7   QNGNRYKIEKVTDSSLKQAL-ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 180 SSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFS 239
           SSN L    +      LS L  LDL +  + +           PS+  L  AN  +   S
Sbjct: 66  SSNVLYETLDL---ESLSTLRTLDLNNNYVQELL-------VGPSIETLHAANNNISRVS 115

Query: 240 LLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNS-SIPN 298
               +       + L++N+     +     G         + +++L L  N  ++ +   
Sbjct: 116 C---SRGQGKKNIYLANNKITM--LRDLDEG-------CRSRVQYLDLKLNEIDTVNFAE 163

Query: 299 WLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKS 358
                  LE+L+L  N +   +  +       +  LDLS N  +   +     S   +  
Sbjct: 164 LAASSDTLEHLNLQYNFIY-DVKGQV--VFAKLKTLDLSSNK-LA-FMGPEFQSAAGVTW 218

Query: 359 LNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSI-YGHLTDQLGQFKNIVTLDFANN 417
           ++LR      ++  I        +  LE  DLR +    G L D   + + + T+     
Sbjct: 219 ISLRN----NKLVLIEKALRFSQN--LEHFDLRGNGFHCGTLRDFFSKNQRVQTVA--KQ 270

Query: 418 SIVGLIPESLGQLSTLRVLRINDNKL----NGTLSAIHFANLTKLSWFRVDGNKLTLGVK 473
           ++  L  ++  + +   +                  +      + +     G++    ++
Sbjct: 271 TVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETE-RLE 329

Query: 474 HDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSAS--QL 531
            +     +   +        +        ++    L     ++ +         A     
Sbjct: 330 CERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGT 389

Query: 532 KFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISP 591
               +GQ ++       +    L  +      M      + +N +      +++    + 
Sbjct: 390 LQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDW---DMYQHKETQ 446

Query: 592 FLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLK 628
                    K      L     N  L +  +  QNL 
Sbjct: 447 LAEENARLKKLNGEADLALASANATLQELVVREQNLA 483

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  124 bits (313), Expect = 5e-30
 Identities = 67/498 (13%), Positives = 152/498 (30%), Gaps = 67/498 (13%)

Query: 245 NFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFI 304
           N +   +  ++D+   +    + +        Q+  +++ L L  N  +      L  F 
Sbjct: 8   NGNRYKIEKVTDSSLKQ--ALASLR-------QSAWNVKELDLSGNPLSQISAADLAPFT 58

Query: 305 HLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGV 364
            LE L+LS+N L    ++  L +L+++  LDL+ N      + + +    ++++L+    
Sbjct: 59  KLELLNLSSNVLY---ETLDLESLSTLRTLDLNNN-----YV-QELLVGPSIETLHAAN- 108

Query: 365 HLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIP 424
                             N +  +                  +    +  ANN I  L  
Sbjct: 109 ------------------NNISRVSCSR-------------GQGKKNIYLANNKITMLRD 137

Query: 425 ESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVA 484
              G  S ++ L +  N+++    A   A+   L    +  N +        +   +L  
Sbjct: 138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY--DVKGQVVFAKLKT 195

Query: 485 LGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGP 544
           L L +  + +       S   + ++ L N+ +  I     L+ +  L+  DL  N  H  
Sbjct: 196 LDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLVLIEKA--LRFSQNLEHFDLRGNGFHCG 252

Query: 545 IPNLTEFTGLLILSVYSN---NMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETK 601
                      + +V       ++G      +                +PF    I   +
Sbjct: 253 TLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKR 312

Query: 602 SLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRL 661
             +AL          L     +    + +     ++   +        + + L   +  L
Sbjct: 313 KEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKAL 372

Query: 662 SG---NILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKF-HGPLPTG 717
                N   +           VG+ E          E  S + +L     ++    +   
Sbjct: 373 DEQVSNGRRAHAELDGTLQQAVGQIELQHAT-----EEQSPLQLLRAIVKRYEEMYVEQQ 427

Query: 718 LCDLAFLQILDIADNNLS 735
                 ++  D+  +  +
Sbjct: 428 SVQNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  124 bits (312), Expect = 5e-30
 Identities = 74/427 (17%), Positives = 140/427 (32%), Gaps = 61/427 (14%)

Query: 140 IPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFL 199
           I     +    +   ++ + +   +     +  N++ LDLS N L  +     L+  + L
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAA-DLAPFTKL 60

Query: 200 EHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQF 259
           E L+L S             N L   ++L                + S+L  LDL++N  
Sbjct: 61  ELLNLSS-------------NVLYETLDL---------------ESLSTLRTLDLNNNYV 92

Query: 260 DKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGT 319
            +              L    S+  L   +N+  S +     R    + + L+NN +   
Sbjct: 93  QE--------------LLVGPSIETLHAANNNI-SRVS--CSRGQGKKNIYLANNKIT-M 134

Query: 320 IDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSG 379
           +     G  + + +LDL LN           AS   L+ LNL+   +        D+   
Sbjct: 135 LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-------DVKGQ 187

Query: 380 CVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRIN 439
            V   L++LDL S+ +   +  +      +  +   NN +V  I ++L     L    + 
Sbjct: 188 VVFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLR 245

Query: 440 DNKLNGTLSAIHFANLTKLSWFRVDGNK-LTLGVKHDWIPPFQLVALGLRNCYVGSRFP- 497
            N  +       F+   ++        K LT   + +   P            + + F  
Sbjct: 246 GNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFAD 305

Query: 498 -LWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLI 556
            L    +K    L    S    +   R   + ++ + +D  + Q    I  +T      I
Sbjct: 306 RLIALKRKEHALLSGQGSETERLECERE--NQARQREIDALKEQYRTVIDQVTLRKQAKI 363

Query: 557 LSVYSNN 563
                  
Sbjct: 364 TLEQKKK 370

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  121 bits (305), Expect = 4e-29
 Identities = 44/343 (12%), Positives = 95/343 (27%), Gaps = 29/343 (8%)

Query: 117 PSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQF 176
             L  L  L  LDL+ N  Q + +        ++  L+ +   I   +          + 
Sbjct: 74  LDLESLSTLRTLDLNNNYVQELLVGP------SIETLHAANNNI-SRVS--CSRGQGKKN 124

Query: 177 LDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLH 236
           + L++N +  + +       S +++LDL+   +    ++  +     +L  L L    ++
Sbjct: 125 IYLANNKITMLRDL-DEGCRSRVQYLDLKLNEIDT-VNFAELAASSDTLEHLNLQYNFIY 182

Query: 237 HFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSI 296
                    F+ L  LDLS N+             +    Q+   +  + L +N     I
Sbjct: 183 DVK--GQVVFAKLKTLDLSSNKLAF----------MGPEFQSAAGVTWISLRNNKL-VLI 229

Query: 297 PNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNL 356
              L    +LE+  L  N        +       +  +       + G+           
Sbjct: 230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE---EECTVP 286

Query: 357 KSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFAN 416
              +          +   D            L  +       L  +         +D   
Sbjct: 287 TLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSET-ERLECERENQARQREIDALK 345

Query: 417 NSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLS 459
                +I +   +      L      L+    +       +L 
Sbjct: 346 EQYRTVIDQVTLRKQAKITLEQKKKALD-EQVSNGRRAHAELD 387

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  110 bits (276), Expect = 2e-25
 Identities = 68/546 (12%), Positives = 152/546 (27%), Gaps = 107/546 (19%)

Query: 383 NGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNK 442
           N  +   +   S+   L        N+  LD + N +  +    L   + L +L ++ N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 443 LNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYS 502
           L      +   +L+ L    ++ N +                               L  
Sbjct: 70  LY---ETLDLESLSTLRTLDLNNNYVQE-----------------------------LLV 97

Query: 503 QKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSN 562
              ++ L+  N++IS +      +     K + L  N+I        +            
Sbjct: 98  GPSIETLHAANNNISRV-SCSRGQG---KKNIYLANNKITMLRDL--DEGCR-------- 143

Query: 563 NMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWM 622
                     S + +LDL  N         L      + +L  L L  N++  ++    +
Sbjct: 144 ----------SRVQYLDLKLNEIDTVNFAEL---AASSDTLEHLNLQYNFIY-DVKG-QV 188

Query: 623 SYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGE 682
            +  LKTL LS+NK    +     S   + W+ L  N+L   I  +L+    LE  D+  
Sbjct: 189 VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRG 246

Query: 683 NEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCI 742
           N F          +  R+  +  ++ K         C +    +                
Sbjct: 247 NGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTV--PTLGHYGAYCCEDLPAPFA 304

Query: 743 NNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRN 802
           + L  +       R     L                                        
Sbjct: 305 DRLIAL------KRKEHALLSGQ------------------------------------G 322

Query: 803 NFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSS 862
           + + ++  E  N    + ++     +   I +     ++  +++     L  ++     +
Sbjct: 323 SETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRA 382

Query: 863 LTFLNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLCGAPLPKNCTENVSISEDENGDE 922
              L+              ++ +     +            + +   +N +I + +    
Sbjct: 383 HAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQH 442

Query: 923 DEDEVD 928
            E ++ 
Sbjct: 443 KETQLA 448

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 83.4 bits (206), Expect = 1e-16
 Identities = 34/258 (13%), Positives = 69/258 (26%), Gaps = 17/258 (6%)

Query: 117 PSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQF 176
              +    L  LDLS N      +   F S   + +++L   ++  +I   L    NL+ 
Sbjct: 185 KGQVVFAKLKTLDLSSNKLA--FMGPEFQSAAGVTWISLRNNKL-VLIEKALRFSQNLEH 241

Query: 177 LDLSSNYLLYVDNFWWLSGLSFLEHLDLRSV-NLSKAFDWLMVTNKLPSLVELRLANCQL 235
            DL  N         + S    ++ +  ++V  L+   +       L         +   
Sbjct: 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPA 301

Query: 236 HHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSS 295
                L         +L    ++ ++          +    +N    R +      + + 
Sbjct: 302 PFADRLIALKRKEHALLSGQGSETER----------LECERENQARQREIDALKEQYRTV 351

Query: 296 IPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCN 355
           I     R      L     +L     S        +          IE  +  +      
Sbjct: 352 IDQVTLRKQAKITLEQKKKALD-EQVSNGRRAHAELDGTLQQAVGQIE--LQHATEEQSP 408

Query: 356 LKSLNLRGVHLSQEISEI 373
           L+ L        +   E 
Sbjct: 409 LQLLRAIVKRYEEMYVEQ 426

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 61.0 bits (148), Expect = 1e-09
 Identities = 16/103 (15%), Positives = 44/103 (42%), Gaps = 3/103 (2%)

Query: 791 LNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSAN 850
            N  ++  ++ ++    +     +   ++ L+ S N  +      +     LE ++ S+N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 851 QLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSSTQLQSFDVSS 893
            L       + SL+ L  L+L+NN +  ++     +++   ++
Sbjct: 69  VLYE--TLDLESLSTLRTLDLNNNYVQ-ELLVGPSIETLHAAN 108

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 59.1 bits (143), Expect = 4e-09
 Identities = 22/227 (9%), Positives = 58/227 (25%), Gaps = 15/227 (6%)

Query: 115 INPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNL 174
           I  +L   ++L + DL  N F    +  FF     ++ +      +  +   +    +  
Sbjct: 229 IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ--TVKKLTGQNEEECTVP 286

Query: 175 QFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTN--KLPSLVELRLAN 232
                 +     +    +   L  L+  +   ++   +    +           E+    
Sbjct: 287 TLGHYGAYCCEDLPA-PFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALK 345

Query: 233 CQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHF 292
            Q        T    +   L+      D+          +  G +    L      +   
Sbjct: 346 EQYRTVIDQVTLRKQAKITLEQKKKALDE---------QVSNGRRAHAELDGTLQQAVG- 395

Query: 293 NSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLN 339
              + +       L+ L       +     +      +I   D+  +
Sbjct: 396 QIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQH 442

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 52.2 bits (125), Expect = 5e-07
 Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 2/82 (2%)

Query: 814 NLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSN 873
           N    +    + +S    +        +++ +D S N LS      ++  T L  LNLS+
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 874 NNLTG--KIPSSTQLQSFDVSS 893
           N L     + S + L++ D+++
Sbjct: 68  NVLYETLDLESLSTLRTLDLNN 89

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  127 bits (321), Expect = 3e-31
 Identities = 97/572 (16%), Positives = 168/572 (29%), Gaps = 144/572 (25%)

Query: 164 IPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLP 223
           +P    N+ +      + +           +     E  ++    L              
Sbjct: 26  MPVEAENVKSKTEYYNAWSEWER------NAPPGNGEQREMAVSRLRD--------CLDR 71

Query: 224 SLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLR 283
              EL L N  L             L  L  S N   +          +P   Q+L SL 
Sbjct: 72  QAHELELNNLGLSSLP----ELPPHLESLVASCNSLTE----------LPELPQSLKSLL 117

Query: 284 HLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIE 343
               +    +   P        LEYL +SNN L+  +    L N + +  +D+  N    
Sbjct: 118 VDNNNLKALSDLPPL-------LEYLGVSNNQLE-KLPE--LQNSSFLKIIDVDNN---- 163

Query: 344 GRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQL 403
             + +      +L+ +                      +N LE L             +L
Sbjct: 164 -SLKKLPDLPPSLEFIAAG-------------------NNQLEELP------------EL 191

Query: 404 GQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRV 463
                +  +   NNS+  L         +L  +   +N L   L  +   NL  L+    
Sbjct: 192 QNLPFLTAIYADNNSLKKLPDL----PLSLESIVAGNNILE-ELPEL--QNLPFLTTIYA 244

Query: 464 DGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIR 523
           D N L                            P        L+ L + ++ ++D+    
Sbjct: 245 DNNLLK-------------------------TLPDLP---PSLEALNVRDNYLTDL---- 272

Query: 524 FLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNN 583
             +    L FLD+ +N   G +  L     L  L+  SN +   L  +  +L  L++SNN
Sbjct: 273 -PELPQSLTFLDVSENIFSG-LSEL--PPNLYYLNASSNEIRS-LCDLPPSLEELNVSNN 327

Query: 584 LFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPY 643
                +             L  L  + N+L  E+P+     QNLK L +  N      P 
Sbjct: 328 KLI-ELPALPP-------RLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLR-EFPD 374

Query: 644 SMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVL 703
              S+  L        R++ ++    +    L+ L V  N      P         +  L
Sbjct: 375 IPESVEDL--------RMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIPES----VEDL 421

Query: 704 ILRSNKFHGPLPTGLCDLAFLQILDIADNNLS 735
            + S +   P          L+      ++  
Sbjct: 422 RMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  119 bits (300), Expect = 1e-28
 Identities = 96/549 (17%), Positives = 186/549 (33%), Gaps = 120/549 (21%)

Query: 114 KINPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSN 173
           ++     ++K  +    ++++++    P      G  R + +SR R              
Sbjct: 25  EMPVEAENVKSKTEYYNAWSEWERNAPP----GNGEQREMAVSRLRD--------CLDRQ 72

Query: 174 LQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANC 233
              L+L++  L  +           LE L     +L++      +     SL  L + N 
Sbjct: 73  AHELELNNLGLSSLP-----ELPPHLESLVASCNSLTE------LPELPQSLKSLLVDNN 121

Query: 234 QLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFN 293
            L   S L       L  L +S+NQ +K  +P          LQN + L+ + +D+N   
Sbjct: 122 NLKALSDL----PPLLEYLGVSNNQLEK--LPE---------LQNSSFLKIIDVDNNSL- 165

Query: 294 SSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASL 353
             +P+       LE+++  NN L+  +    L NL  ++ +    N      + +     
Sbjct: 166 KKLPDLP---PSLEFIAAGNNQLE-ELPE--LQNLPFLTAIYADNN-----SLKKLPDLP 214

Query: 354 CNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLD 413
            +L+S+                      +N LE L             +L     + T+ 
Sbjct: 215 LSLESIVAG-------------------NNILEEL------------PELQNLPFLTTIY 243

Query: 414 FANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVK 473
             NN +  L P+    L  L V    DN L          +LT L       + L+    
Sbjct: 244 ADNNLLKTL-PDLPPSLEALNVR---DNYLTDLPELP--QSLTFLDVSENIFSGLSEL-- 295

Query: 474 HDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKF 533
                P  L  L   +  + S   L       L+ L + N+ + ++          +L+ 
Sbjct: 296 -----PPNLYYLNASSNEIRSLCDLP----PSLEELNVSNNKLIELPA-----LPPRLER 341

Query: 534 LDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFL 593
           L    N +   +P       L  L V  N +    P I  ++  L ++++L      P  
Sbjct: 342 LIASFNHLAE-VPE--LPQNLKQLHVEYNPLRE-FPDIPESVEDLRMNSHLAEVPELP-- 395

Query: 594 CYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVW 653
                  ++L  L +  N L  E PD     ++++ L++++ +      ++  +   L  
Sbjct: 396 -------QNLKQLHVETNPLR-EFPD---IPESVEDLRMNSERVVDPYEFAHETTDKLED 444

Query: 654 LHLGENRLS 662
                +   
Sbjct: 445 DVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  117 bits (294), Expect = 9e-28
 Identities = 98/489 (20%), Positives = 160/489 (32%), Gaps = 109/489 (22%)

Query: 272 IPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFI-------------HLEYLSLSNNSLQG 318
           +P   +N+ S        + +  + P                        L L+N  L  
Sbjct: 26  MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS- 84

Query: 319 TIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFS 378
           ++      +L S   L  S N   E  +P    SL +L   N     LS           
Sbjct: 85  SLPEL-PPHLES---LVASCNSLTE--LPELPQSLKSLLVDNNNLKALSDLPP------- 131

Query: 379 GCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRI 438
                 LE L + ++ +   L + L     +  +D  NNS+  L P+       L  +  
Sbjct: 132 -----LLEYLGVSNNQL-EKLPE-LQNSSFLKIIDVDNNSLKKL-PDLPPS---LEFIAA 180

Query: 439 NDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPL 498
            +N+L   L      NL  L+    D N L                          + P 
Sbjct: 181 GNNQLE-ELP--ELQNLPFLTAIYADNNSLK-------------------------KLPD 212

Query: 499 WLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILS 558
              S   L+ +   N+ + ++  ++ L     L  +    N +   +P+      L  L+
Sbjct: 213 LPLS---LESIVAGNNILEELPELQNLPF---LTTIYADNNLLKT-LPD--LPPSLEALN 263

Query: 559 VYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELP 618
           V  N ++  LP +  +L FLD+S N+FS  +S           +L  L  + N +   L 
Sbjct: 264 VRDNYLTD-LPELPQSLTFLDVSENIFS-GLSELP-------PNLYYLNASSNEIR-SLC 313

Query: 619 DCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSL-KNCTALES 677
           D      +L+ L +SNNK    LP     L  L          S N L  + +    L+ 
Sbjct: 314 DLP---PSLEELNVSNNKLI-ELPALPPRLERL--------IASFNHLAEVPELPQNLKQ 361

Query: 678 LDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGA 737
           L V  N      P           V  LR N     +P    +   L+ L +  N L   
Sbjct: 362 LHVEYNPLR-EFPDIPES------VEDLRMNSHLAEVPELPQN---LKQLHVETNPLR-E 410

Query: 738 IPNCINNLT 746
            P+   ++ 
Sbjct: 411 FPDIPESVE 419

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  116 bits (292), Expect = 1e-27
 Identities = 94/583 (16%), Positives = 180/583 (30%), Gaps = 155/583 (26%)

Query: 304 IHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRG 363
             L+     +++L   +  E   N+ S +    + +   E   P        +    LR 
Sbjct: 11  TFLQEPLRHSSNLT-EMPVE-AENVKSKTEYYNAWSE-WERNAPPGNGEQREMAVSRLRD 67

Query: 364 VHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLI 423
                           C+      L+L +  +   L +      ++ +L  + NS+  L 
Sbjct: 68  ----------------CLDRQAHELELNNLGL-SSLPELPP---HLESLVASCNSLTEL- 106

Query: 424 PESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLV 483
           PE    L +L V   N   L+          L  L    V  N+L        +P  Q  
Sbjct: 107 PELPQSLKSLLVDNNNLKALSDLPP-----LLEYLG---VSNNQLEK------LPELQ-- 150

Query: 484 ALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHG 543
                             +   L+ + + N+S+  +           L+F+  G NQ+  
Sbjct: 151 ------------------NSSFLKIIDVDNNSLKKLP-----DLPPSLEFIAAGNNQLEE 187

Query: 544 PIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSL 603
            +P L     L  +   +N++   LP +  +L  +   NN+    +       +     L
Sbjct: 188 -LPELQNLPFLTAIYADNNSLKK-LPDLPLSLESIVAGNNILE-ELPE-----LQNLPFL 239

Query: 604 NALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSG 663
             +  ++N L   LPD      +L+ L + +N  T +LP    SLT L       + LS 
Sbjct: 240 TTIYADNNLLK-TLPDLP---PSLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSE 294

Query: 664 NILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAF 723
                      L  L+   NE        + +    +  L + +NK    LP     L  
Sbjct: 295 LP-------PNLYYLNASSNEI-----RSLCDLPPSLEELNVSNNKLIE-LPALPPRL-- 339

Query: 724 LQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGE 783
            + L  + N+L+  +P    NL                                      
Sbjct: 340 -ERLIASFNHLA-EVPELPQNL-------------------------------------- 359

Query: 784 MVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLE 843
                      + + +  N    + P    +++ L+  +         +PE      +L+
Sbjct: 360 -----------KQLHVEYNPLR-EFPDIPESVEDLRMNSHL-----AEVPELPQ---NLK 399

Query: 844 SIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSSTQL 886
            +    N L  E P+   S+     L +++  +      + + 
Sbjct: 400 QLHVETNPLR-EFPDIPESVE---DLRMNSERVVDPYEFAHET 438

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  105 bits (264), Expect = 5e-24
 Identities = 85/485 (17%), Positives = 150/485 (30%), Gaps = 96/485 (19%)

Query: 411 TLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTL 470
                ++++  + P     + +        ++              +++  R+       
Sbjct: 15  EPLRHSSNLTEM-PVEAENVKSKTEYYNAWSEWERNAPPG-NGEQREMAVSRLRDCLDR- 71

Query: 471 GVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQ 530
                     Q   L L N  + S  P       HL+ L    +S++++      +S   
Sbjct: 72  ----------QAHELELNNLGL-SSLPELP---PHLESLVASCNSLTELPE--LPQSLKS 115

Query: 531 LKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLIS--SNLVFLDLSNNLFSGS 588
           L   +     +    P L        L V +N +   LP +   S L  +D+ NN     
Sbjct: 116 LLVDNNNLKALSDLPPLLEY------LGVSNNQLEK-LPELQNSSFLKIIDVDNNSLK-K 167

Query: 589 ISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSL 648
           +            SL  +   +N L  ELP+   +   L  +   NN     LP      
Sbjct: 168 LPDLP-------PSLEFIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLK-KLP---DLP 214

Query: 649 TSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSN 708
            SL  +  G N L    L  L+N   L ++    N     +P         +  L +R N
Sbjct: 215 LSLESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPS----LEALNVRDN 267

Query: 709 KFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDV 768
                LP     L FL + +   + LS   PN +  L                       
Sbjct: 268 YLTD-LPELPQSLTFLDVSENIFSGLSELPPN-LYYLN---------------------- 303

Query: 769 GVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSF 828
                      S  E+    D+   +  +++S N    ++P     L   + L  S+N  
Sbjct: 304 ----------ASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHL 349

Query: 829 TGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSSTQLQS 888
              +PE      +L+ +    N L  E P+   S+  L      N++L         L+ 
Sbjct: 350 A-EVPELPQ---NLKQLHVEYNPLR-EFPDIPESVEDLR----MNSHLAEVPELPQNLKQ 400

Query: 889 FDVSS 893
             V +
Sbjct: 401 LHVET 405

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 87.4 bits (217), Expect = 4e-18
 Identities = 67/375 (17%), Positives = 117/375 (31%), Gaps = 96/375 (25%)

Query: 527 SASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFS 586
           S + L+      + +                    +      P  +     + +S     
Sbjct: 9   SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRL--- 65

Query: 587 GSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMG 646
                    R    +  + L+LN+  L+  LP+      +L++L  S N  T  LP    
Sbjct: 66  ---------RDCLDRQAHELELNNLGLS-SLPE---LPPHLESLVASCNSLT-ELPELPQ 111

Query: 647 SLTSLVWLHLGENRL------------SGNILVSL---KNCTALESLDVGENEFVGNIPT 691
           SL SL+  +     L            S N L  L   +N + L+ +DV  N     +P 
Sbjct: 112 SLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPD 170

Query: 692 WIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTA 751
                   +  +   +N+    LP  L +L FL  +   +N+L   +P+   +L      
Sbjct: 171 LPP----SLEFIAAGNNQLEE-LPE-LQNLPFLTAIYADNNSLK-KLPDLPLSLE----- 218

Query: 752 CSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLE 811
                                                        I    N        E
Sbjct: 219 --------------------------------------------SIVAGNNILE--ELPE 232

Query: 812 VTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNL 871
           + NL  L ++    N     +P+      SLE+++   N L+ ++PE   SLTFL+    
Sbjct: 233 LQNLPFLTTIYADNNLLK-TLPDLPP---SLEALNVRDNYLT-DLPELPQSLTFLDVSEN 287

Query: 872 SNNNLTGKIPSSTQL 886
             + L+   P+   L
Sbjct: 288 IFSGLSELPPNLYYL 302

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 68.5 bits (168), Expect = 4e-12
 Identities = 48/272 (17%), Positives = 87/272 (31%), Gaps = 55/272 (20%)

Query: 622 MSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVG 681
           +S   L+     ++  T  +P    ++ S    +   +    N          +    + 
Sbjct: 8   VSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66

Query: 682 ENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNC 741
           +                +   L L +      LP        L+ L  + N+L+  +P  
Sbjct: 67  DC------------LDRQAHELELNNLGLS-SLPE---LPPHLESLVASCNSLT-ELPEL 109

Query: 742 INNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISR 801
             +L       S          L                        D+  L+  + +S 
Sbjct: 110 PQSLK------SLLVDNNNLKALS-----------------------DLPPLLEYLGVSN 140

Query: 802 NNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMS 861
           N    K+P E+ N   L+ ++   NS   ++P+      SLE I    NQL  E+PE + 
Sbjct: 141 NQLE-KLP-ELQNSSFLKIIDVDNNSLK-KLPDLPP---SLEFIAAGNNQLE-ELPE-LQ 192

Query: 862 SLTFLNHLNLSNNNLTGKIPSSTQLQSFDVSS 893
           +L FL  +   NN+L         L+S    +
Sbjct: 193 NLPFLTAIYADNNSLKKLPDLPLSLESIVAGN 224

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.8 bits (122), Expect = 1e-06
 Identities = 24/133 (18%), Positives = 50/133 (37%), Gaps = 19/133 (14%)

Query: 785 VDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIG------- 837
           ++  ++ N      +  ++   ++P+E  N+K+      +++ +    P   G       
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62

Query: 838 ------VMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSS-TQLQSFD 890
                 + R    ++ +   LS  +PE    L     L  S N+LT ++P     L+S  
Sbjct: 63  SRLRDCLDRQAHELELNNLGLS-SLPELPPHLE---SLVASCNSLT-ELPELPQSLKSLL 117

Query: 891 VSSFAGNDLCGAP 903
           V +     L   P
Sbjct: 118 VDNNNLKALSDLP 130

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  127 bits (320), Expect = 2e-30
 Identities = 69/346 (19%), Positives = 122/346 (35%), Gaps = 46/346 (13%)

Query: 118 SLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFL 177
            L   + +  L+L+    + I     F     ++ L +    I  + PH   N+  L  L
Sbjct: 70  LLDSFRQVELLNLNDLQIEEID-TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128

Query: 178 DLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSK----AFDWLMVTNKLPSLVELRLANC 233
            L  N L  +           L  L + + NL +     F          SL  L+L++ 
Sbjct: 129 VLERNDLSSLPRG-IFHNTPKLTTLSMSNNNLERIEDDTFQ------ATTSLQNLQLSSN 181

Query: 234 QLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFN 293
           +L H  L   +   SL   ++S N                  L    ++  L    N   
Sbjct: 182 RLTHVDL---SLIPSLFHANVSYNLLST--------------LAIPIAVEELDASHNSI- 223

Query: 294 SSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASL 353
           + +   +   + L  L L +N+L    D+  L N   +  +DLS N  +E  +      +
Sbjct: 224 NVVRGPV--NVELTILKLQHNNL---TDTAWLLNYPGLVEVDLSYNE-LEKIMYHPFVKM 277

Query: 354 CNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLD 413
             L+ L +        +  +        +  L+ LDL  + +  H+     QF  +  L 
Sbjct: 278 QRLERLYISN----NRLVALNLYGQPIPT--LKVLDLSHNHLL-HVERNQPQFDRLENLY 330

Query: 414 FANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLS 459
             +NSIV L    L    TL+ L ++ N  +       F N+ + +
Sbjct: 331 LDHNSIVTL---KLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPA 373

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  121 bits (306), Expect = 9e-29
 Identities = 56/371 (15%), Positives = 117/371 (31%), Gaps = 54/371 (14%)

Query: 117 PSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQF 176
                   +     + + + G +      ++ N + +    + +  +    L +   ++ 
Sbjct: 24  QYDCVFYDVHIDMQTQDVYFGFE----DITLNNQKIVTFKNSTMRKLPAALLDSFRQVEL 79

Query: 177 LDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSK----AFDWLMVTNKLPSLVELRLAN 232
           L+L+   +  +D +   +    ++ L +    +       F        +P L  L L  
Sbjct: 80  LNLNDLQIEEIDTY-AFAYAHTIQKLYMGFNAIRYLPPHVFQ------NVPLLTVLVLER 132

Query: 233 CQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPR--------------GLQN 278
             L         N   LT L +S+N  ++  I    F                    L  
Sbjct: 133 NDLSSLPRGIFHNTPKLTTLSMSNNNLER--IEDDTFQATTSLQNLQLSSNRLTHVDLSL 190

Query: 279 LTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSL 338
           + SL H  +  N  ++     L   I +E L  S+NS+   +       LT    L L  
Sbjct: 191 IPSLFHANVSYNLLST-----LAIPIAVEELDASHNSIN-VVRGPVNVELTI---LKLQH 241

Query: 339 NMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGH 398
           N   +      + +   L  ++L    L  +I      F       LE L + ++ +   
Sbjct: 242 NNLTD---TAWLLNYPGLVEVDLSYNELE-KIMY--HPFVKMQR--LERLYISNNRL-VA 292

Query: 399 LTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKL 458
           L         +  LD ++N ++  +  +  Q   L  L ++ N     +  +  +    L
Sbjct: 293 LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNS----IVTLKLSTHHTL 347

Query: 459 SWFRVDGNKLT 469
               +  N   
Sbjct: 348 KNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  120 bits (303), Expect = 2e-28
 Identities = 82/619 (13%), Positives = 183/619 (29%), Gaps = 80/619 (12%)

Query: 269 FGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNL 328
           +  I   LQ       + +D    +           + + ++  N++++  + +  L + 
Sbjct: 16  YKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSF 74

Query: 329 TSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESL 388
             +  L+L+    IE     + A    ++ L +    +   +     +F       L  L
Sbjct: 75  RQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPP--HVFQNVPL--LTVL 128

Query: 389 DLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLS 448
            L  + +             + TL  +NN++  +  ++    ++L+ L+++ N+    L+
Sbjct: 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR----LT 184

Query: 449 AIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQF 508
            +  + +  L    V  N L+                              L     ++ 
Sbjct: 185 HVDLSLIPSLFHANVSYNLLST-----------------------------LAIPIAVEE 215

Query: 509 LYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPL 568
           L   ++SI+ +          +L  L L  N +     +                     
Sbjct: 216 LDASHNSINVVRGPVN----VELTILKLQHNNLT----DTAWLLNY-------------- 253

Query: 569 PLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLK 628
                 LV +DLS N     I         + + L  L +++N L   L         LK
Sbjct: 254 ----PGLVEVDLSYNELE-KIMYHP---FVKMQRLERLYISNNRLV-ALNLYGQPIPTLK 304

Query: 629 TLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGN 688
            L LS+N    ++  +      L  L+L  N +     + L     L++L +  N++  N
Sbjct: 305 VLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT---LKLSTHHTLKNLTLSHNDWDCN 360

Query: 689 IPTWIGERFSRMVVLILRSNKFHGPLPTG--LCDLAFLQILDIADNNLSGAIPNCINNLT 746
               +    +R  V     +            C  +    LD     ++           
Sbjct: 361 SLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRA 420

Query: 747 GMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSG 806
               + + T +  Q L   I     +  + +   + E+ +      + ++ +        
Sbjct: 421 QGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELR--AEVQQLTNEQIQQEQL 478

Query: 807 KIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESID-FSANQLSGEIPESMSSLTF 865
              L       L+      +           V   L+    F   +      E+ +    
Sbjct: 479 LQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKE 538

Query: 866 LNHLNLSNNNLTGKIPSST 884
              L   N  L  ++ +  
Sbjct: 539 TEDLEQENIALEKQLDNKR 557

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  107 bits (269), Expect = 3e-24
 Identities = 61/312 (19%), Positives = 105/312 (33%), Gaps = 40/312 (12%)

Query: 118 SLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFL 177
              ++  L+ L L  ND   +     F +   L  L++S   +  +        ++LQ L
Sbjct: 118 VFQNVPLLTVLVLERNDLSSLP-RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 176

Query: 178 DLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHH 237
            LSSN L +VD    LS +  L H ++    LS             ++ EL  ++  ++ 
Sbjct: 177 QLSSNRLTHVD----LSLIPSLFHANVSYNLLST-------LAIPIAVEELDASHNSINV 225

Query: 238 FSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIP 297
                      LT+L L  N                  L N   L  + L  N     + 
Sbjct: 226 VRGPV---NVELTILKLQHNNLTD-----------TAWLLNYPGLVEVDLSYNELEKIMY 271

Query: 298 NWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLK 357
           +   +   LE L +SNN L     +     + ++  LDLS N  +   + R+      L+
Sbjct: 272 HPFVKMQRLERLYISNNRL--VALNLYGQPIPTLKVLDLSHNH-LL-HVERNQPQFDRLE 327

Query: 358 SLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANN 417
           +L L    +   +   L          L++L L  +            F+N+      + 
Sbjct: 328 NLYLDHNSIV-TLK--LSTHH-----TLKNLTLSHNDW--DCNSLRALFRNVARPAVDDA 377

Query: 418 SIVGLIPESLGQ 429
                I   L  
Sbjct: 378 DQHCKIDYQLEH 389

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 71.9 bits (176), Expect = 5e-13
 Identities = 57/359 (15%), Positives = 104/359 (28%), Gaps = 73/359 (20%)

Query: 541 IHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINET 600
           I   +     F  + I     +   G   +  +N   +   N+     +   L   ++  
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAAL---LDSF 74

Query: 601 KSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENR 660
           + +  L LND  +       +     ++ L +  N      P+   ++  L  L L  N 
Sbjct: 75  RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND 134

Query: 661 LS---GNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTG 717
           LS     I  +      L +L +  N     I     +  + +  L L SN+    +   
Sbjct: 135 LSSLPRGIFHNTPK---LTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTH-VDLS 189

Query: 718 LCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKAS 777
           L  +  L   +++ N LS  +   I                                   
Sbjct: 190 L--IPSLFHANVSYNLLS-TLAIPIA---------------------------------- 212

Query: 778 VVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIG 837
                           V  +D S N+ +    +       L  L   +N+ T      + 
Sbjct: 213 ----------------VEELDASHNSINV---VRGPVNVELTILKLQHNNLTD--TAWLL 251

Query: 838 VMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLT---GKIPSSTQLQSFDVSS 893
               L  +D S N+L   +      +  L  L +SNN L            L+  D+S 
Sbjct: 252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSH 310

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  119 bits (301), Expect = 1e-29
 Identities = 60/342 (17%), Positives = 116/342 (33%), Gaps = 39/342 (11%)

Query: 120 LDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDL 179
            +        ++ +  +   +     S  N++ L+LS   +  +    L   + L+ L+L
Sbjct: 7   QNGNRYKIEKVTDSSLKQA-LASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 180 SSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFS 239
           SSN L    +      LS L  LDL +  + +           PS+  L  AN  +   S
Sbjct: 66  SSNVLYETLDL---ESLSTLRTLDLNNNYVQELL-------VGPSIETLHAANNNISRVS 115

Query: 240 LLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNS-SIPN 298
               +       + L++N+     +     G         + +++L L  N  ++ +   
Sbjct: 116 C---SRGQGKKNIYLANNKITM--LRDLDEG-------CRSRVQYLDLKLNEIDTVNFAE 163

Query: 299 WLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKS 358
                  LE+L+L  N +   +  +       +  LDLS N  +   +     S   +  
Sbjct: 164 LAASSDTLEHLNLQYNFIY-DVKGQV--VFAKLKTLDLSSNK-LA-FMGPEFQSAAGVTW 218

Query: 359 LNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIY-GHLTDQLGQFKNIVTLDFANN 417
           ++LR      ++  I        +  LE  DLR +  + G L D   + + + T+     
Sbjct: 219 ISLRN----NKLVLIEKALRFSQN--LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272

Query: 418 SIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLS 459
                +     +  T+  L          L A     L  L 
Sbjct: 273 K---KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALG 311

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  117 bits (295), Expect = 7e-29
 Identities = 64/351 (18%), Positives = 118/351 (33%), Gaps = 56/351 (15%)

Query: 140 IPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFL 199
           I     +    +   ++ + +   +     +  N++ LDLS N L  +     L+  + L
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAA-DLAPFTKL 60

Query: 200 EHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQF 259
           E L+L S             N L   ++L                + S+L  LDL++N  
Sbjct: 61  ELLNLSS-------------NVLYETLDL---------------ESLSTLRTLDLNNNYV 92

Query: 260 DKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGT 319
            +              L    S+  L   +N+  S +     R    + + L+NN +   
Sbjct: 93  QE--------------LLVGPSIETLHAANNNI-SRVS--CSRGQGKKNIYLANNKIT-M 134

Query: 320 IDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSG 379
           +     G  + + +LDL LN           AS   L+ LNL+   +        D+   
Sbjct: 135 LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-------DVKGQ 187

Query: 380 CVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRIN 439
            V   L++LDL S+ +   +  +      +  +   NN +V  I ++L     L    + 
Sbjct: 188 VVFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLR 245

Query: 440 DNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNC 490
            N  +       F+   ++        K   G   +      L   G   C
Sbjct: 246 GNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCC 296

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  116 bits (292), Expect = 1e-28
 Identities = 62/312 (19%), Positives = 110/312 (35%), Gaps = 35/312 (11%)

Query: 118 SLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFL 177
                 ++  LDLS N    I           L  LNLS   +   +   L +LS L+ L
Sbjct: 29  LRQSAWNVKELDLSGNPLSQIS-AADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTL 85

Query: 178 DLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHH 237
           DL++NY+        L     +E L   + N+S+     +  ++      + LAN ++  
Sbjct: 86  DLNNNYVQE------LLVGPSIETLHAANNNISR-----VSCSRGQGKKNIYLANNKITM 134

Query: 238 FSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIP 297
              L     S +  LDL  N+ D                 +  +L HL L  N     + 
Sbjct: 135 LRDLDEGCRSRVQYLDLKLNEIDT--------VNFAELAASSDTLEHLNLQYNFI-YDVK 185

Query: 298 NWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLK 357
             +  F  L+ L LS+N L   +      +   ++W+ L  N  +   I +++    NL+
Sbjct: 186 GQVV-FAKLKTLDLSSNKLA-FMG-PEFQSAAGVTWISLRNNK-LV-LIEKALRFSQNLE 240

Query: 358 SLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANN 417
             +LRG                  +  ++++  ++      LT Q  +   + TL     
Sbjct: 241 HFDLRGNGFHCGTLRDFFSK----NQRVQTVAKQTVK---KLTGQNEEECTVPTLGHYGA 293

Query: 418 SIVGLIPESLGQ 429
                +P     
Sbjct: 294 YCCEDLPAPFAD 305

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  101 bits (254), Expect = 1e-23
 Identities = 36/228 (15%), Positives = 75/228 (32%), Gaps = 24/228 (10%)

Query: 117 PSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQF 176
             L  L  L  LDL+ N  Q + +        ++  L+ +   I   +          + 
Sbjct: 74  LDLESLSTLRTLDLNNNYVQELLVGP------SIETLHAANNNI-SRVS--CSRGQGKKN 124

Query: 177 LDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLH 236
           + L++N +  + +       S +++LDL+   +    ++  +     +L  L L    ++
Sbjct: 125 IYLANNKITMLRDL-DEGCRSRVQYLDLKLNEIDT-VNFAELAASSDTLEHLNLQYNFIY 182

Query: 237 HFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSI 296
                    F+ L  LDLS N+             +    Q+   +  + L +N     I
Sbjct: 183 DVK--GQVVFAKLKTLDLSSNKLAF----------MGPEFQSAAGVTWISLRNNKL-VLI 229

Query: 297 PNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEG 344
              L    +LE+  L  N        +       +  +       + G
Sbjct: 230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 96.6 bits (241), Expect = 8e-22
 Identities = 50/342 (14%), Positives = 114/342 (33%), Gaps = 57/342 (16%)

Query: 245 NFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFI 304
           N +   +  ++D+   +    + +        Q+  +++ L L  N  +      L  F 
Sbjct: 8   NGNRYKIEKVTDSSLKQ--ALASLR-------QSAWNVKELDLSGNPLSQISAADLAPFT 58

Query: 305 HLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGV 364
            LE L+LS+N L    ++  L +L+++  LDL+ N      + + +    ++++L+    
Sbjct: 59  KLELLNLSSNVLY---ETLDLESLSTLRTLDLNNN-----YV-QELLVGPSIETLHAAN- 108

Query: 365 HLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIP 424
                             N +  +                + +    +  ANN I  L  
Sbjct: 109 ------------------NNISRVSC-------------SRGQGKKNIYLANNKITMLRD 137

Query: 425 ESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVA 484
              G  S ++ L +  N+++    A   A+   L    +  N +        +   +L  
Sbjct: 138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY--DVKGQVVFAKLKT 195

Query: 485 LGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGP 544
           L L +  + +       S   + ++ L N+ +  I     L+ +  L+  DL  N  H  
Sbjct: 196 LDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLVLIEKA--LRFSQNLEHFDLRGNGFHCG 252

Query: 545 IPN--LTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNL 584
                 ++   +  ++  +             +  L      
Sbjct: 253 TLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAY 294

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 94.7 bits (236), Expect = 3e-21
 Identities = 45/290 (15%), Positives = 88/290 (30%), Gaps = 49/290 (16%)

Query: 385 LESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLN 444
            +   +   S+   L        N+  LD + N +  +    L   + L +L ++ N L 
Sbjct: 12  YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71

Query: 445 GTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQK 504
                +   +L+ L    ++ N +                               L    
Sbjct: 72  ---ETLDLESLSTLRTLDLNNNYVQE-----------------------------LLVGP 99

Query: 505 HLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHG-PIPNLTEFTGLLILSVYSNN 563
            ++ L+  N++IS +      +     K + L  N+I      +    + +  L +  N 
Sbjct: 100 SIETLHAANNNISRV-SCSRGQG---KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE 155

Query: 564 MS----GPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPD 619
           +       L   S  L  L+L  N     +   +         L  L L+ N L   +  
Sbjct: 156 IDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-----FAKLKTLDLSSNKLA-FMGP 208

Query: 620 CWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSL 669
            + S   +  + L NNK    +  ++    +L    L  N      L   
Sbjct: 209 EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDF 257

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 94.3 bits (235), Expect = 4e-21
 Identities = 55/246 (22%), Positives = 95/246 (38%), Gaps = 21/246 (8%)

Query: 504 KHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHG-PIPNLTEFTGLLILSVYSN 562
              +   + +SS+         +SA  +K LDL  N +      +L  FT L +L++ SN
Sbjct: 10  NRYKIEKVTDSSLKQA-LASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 563 NMSGPLPLIS-SNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCW 621
            +   L L S S L  LDL+NN             +    S+  L   +N ++  +    
Sbjct: 69  VLYETLDLESLSTLRTLDLNNNYVQ---------ELLVGPSIETLHAANNNIS-RVSCSR 118

Query: 622 MSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSG-NILVSLKNCTALESLDV 680
              Q  K + L+NNK T       G  + + +L L  N +   N      +   LE L++
Sbjct: 119 G--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 681 GENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPN 740
             N    ++   +   F+++  L L SNK    +       A +  + + +N L   I  
Sbjct: 177 QYNFIY-DVKGQVV--FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEK 231

Query: 741 CINNLT 746
            +    
Sbjct: 232 ALRFSQ 237

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 91.6 bits (228), Expect = 4e-20
 Identities = 47/302 (15%), Positives = 95/302 (31%), Gaps = 42/302 (13%)

Query: 601 KSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENR 660
                 ++ D+ L   L     S  N+K L LS N  +      +   T L  L+L  N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 661 LSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCD 720
           L     + L++ + L +LD+  N     +          +  L   +N     +      
Sbjct: 70  LYE--TLDLESLSTLRTLDLNNNYV-QELLV-----GPSIETLHAANNNISR-VSCSR-- 118

Query: 721 LAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPL---PIDVGVILVEKAS 777
               + + +A+N ++          + +           QYL L    I           
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRV-----------QYLDLKLNEI----------D 157

Query: 778 VVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIG 837
            V+  E+       + +  +++  N     +  +      L++L+ S N     +     
Sbjct: 158 TVNFAELAAS---SDTLEHLNLQYNFIY-DVKGQ-VVFAKLKTLDLSSNKLA-FMGPEFQ 211

Query: 838 VMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGN 897
               +  I    N+L   I +++     L H +L  N            ++  V + A  
Sbjct: 212 SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270

Query: 898 DL 899
            +
Sbjct: 271 TV 272

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 61.5 bits (150), Expect = 4e-10
 Identities = 17/103 (16%), Positives = 46/103 (44%), Gaps = 3/103 (2%)

Query: 791 LNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSAN 850
            N  ++  ++ ++    +     +   ++ L+ S N  +      +     LE ++ S+N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 851 QLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSSTQLQSFDVSS 893
            L  E  + + SL+ L  L+L+NN +  ++     +++   ++
Sbjct: 69  VLY-ETLD-LESLSTLRTLDLNNNYVQ-ELLVGPSIETLHAAN 108

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.9 bits (125), Expect = 4e-07
 Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 1/75 (1%)

Query: 814 NLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSN 873
           N    +    + +S    +        +++ +D S N LS      ++  T L  LNLS+
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 874 NNLTGKIPSSTQLQS 888
           N L  +      L +
Sbjct: 68  NVLY-ETLDLESLST 81

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  123 bits (309), Expect = 2e-29
 Identities = 99/549 (18%), Positives = 182/549 (33%), Gaps = 102/549 (18%)

Query: 149 NLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVN 208
               LN+S+  I  +    + +LS L+ L +S N + Y+D                    
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI------------------- 62

Query: 209 LSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWV 268
               F           L  L L++ +L   S        +L  LDLS N FD        
Sbjct: 63  --SVFK------FNQELEYLDLSHNKLVKISC---HPTVNLKHLDLSFNAFDA------- 104

Query: 269 FGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNL 328
             PI +   N++ L+ LGL + H   S         HL    +     +   + E    L
Sbjct: 105 -LPICKEFGNMSQLKFLGLSTTHLEKSSVL---PIAHLNISKVLLVLGETYGEKEDPEGL 160

Query: 329 TSISWLDLSLNMGIEGRIP----RSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNG 384
              +   L +              S+ ++ NL+  N++ V    + S  L I +   +N 
Sbjct: 161 QDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNP 220

Query: 385 -LESLDLRSDSIYGHLTDQLGQF---KNIVTLDFANNSIVGLIPESLGQLST--LRVLRI 438
            L +L L +     +   ++ Q      +     +N  + G +       S   L+ L I
Sbjct: 221 KLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSI 280

Query: 439 NDNKLN--GTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRF 496
           +    +  G   +  +   + ++      +   +      +                   
Sbjct: 281 HQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVH----MLCPS--------------- 321

Query: 497 PLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLI 556
                       L   N+ ++D          ++L+ L L  NQ+   +  + E T  + 
Sbjct: 322 -----KISPFLHLDFSNNLLTDTVFENC-GHLTELETLILQMNQLKE-LSKIAEMTTQM- 373

Query: 557 LSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGE 616
                            +L  LD+S N  S       C   + TKSL +L ++ N L   
Sbjct: 374 ----------------KSLQQLDISQNSVSYDEKKGDC---SWTKSLLSLNMSSNILTDT 414

Query: 617 LPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALE 676
           +  C      +K L L +NK   ++P  +  L +L  L++  N+L           T+L+
Sbjct: 415 IFRCLPP--RIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQ 471

Query: 677 SLDVGENEF 685
            + +  N +
Sbjct: 472 KIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  116 bits (291), Expect = 3e-27
 Identities = 84/527 (15%), Positives = 168/527 (31%), Gaps = 79/527 (14%)

Query: 123 KHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSN 182
           +  + L++S N    +       S+  LR L +S  RI  +          L++LDLS N
Sbjct: 21  QKTTILNISQNYISELW-TSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79

Query: 183 YLLYVDNFWWLSGLSFL--EHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSL 240
            L+ + +      L  L        ++ + K F        +  L  L L+   L   S+
Sbjct: 80  KLVKI-SCHPTVNLKHLDLSFNAFDALPICKEFG------NMSQLKFLGLSTTHLEKSSV 132

Query: 241 LATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNL--TSLRHLGLDSNHFNSSIPN 298
           L  A+ +   VL +            +     P GLQ+    SL  +   +  F+  +  
Sbjct: 133 LPIAHLNISKVLLVLGET--------YGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDV 184

Query: 299 WLYRFIHLEYLSLSNN---SLQGTIDSEALGNLTSISWLDLSLNM----GIEGRIPRSMA 351
            +    +LE  ++      +      S      T+    +L+LN              + 
Sbjct: 185 SVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLV 244

Query: 352 SLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVT 411
               +   ++  V L  ++      +SG     L    + SD      +     F N+  
Sbjct: 245 WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNI 304

Query: 412 LDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLG 471
            +F  +    +      ++S    L  ++N L       +  +LT+L    +  N+L   
Sbjct: 305 KNFTVSGTRMVHMLCPSKISPFLHLDFSNNLL-TDTVFENCGHLTELETLILQMNQLKE- 362

Query: 472 VKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQL 531
                +     +   +++                LQ L +  +S+S             L
Sbjct: 363 -----LSKIAEMTTQMKS----------------LQQLDISQNSVSYDEKKGDCSWTKSL 401

Query: 532 KFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISP 591
             L++  N +                             +   +  LDL +N        
Sbjct: 402 LSLNMSSNILT----------------------DTIFRCLPPRIKVLDLHSNKIK----- 434

Query: 592 FLCYRINETKSLNALQLNDNYLNGELPDCW-MSYQNLKTLKLSNNKF 637
            +  ++ + ++L  L +  N L   +PD       +L+ + L  N +
Sbjct: 435 SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  105 bits (263), Expect = 1e-23
 Identities = 82/429 (19%), Positives = 160/429 (37%), Gaps = 27/429 (6%)

Query: 121 DLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGM-IPHHLGNLSNLQFLDL 179
             + L YLDLS N    I          NL++L+LS      + I    GN+S L+FL L
Sbjct: 67  FNQELEYLDLSHNKLVKI----SCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGL 122

Query: 180 SSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFS 239
           S+ +L        ++ L+  + L +      +  D   + +   +   L +       F 
Sbjct: 123 STTHLEKSS-VLPIAHLNISKVLLVLGETYGEKEDPEGLQDF--NTESLHIVFPTNKEFH 179

Query: 240 LLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNW 299
            +   +  ++  L+LS+ +          F  I   LQ    L +L L++     +    
Sbjct: 180 FILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIR 239

Query: 300 LYRFI---HLEYLSLSNNSLQGTIDSEALG----NLTSISWLDLSLNMGIEGRIPRSMAS 352
           + + +    + Y S+SN  LQG +D         +L ++S   +  +       P+S   
Sbjct: 240 ILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSD---VFGFPQSYIY 296

Query: 353 LCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTL 412
                ++N++   +S      +   S         LD  ++ +   + +  G    + TL
Sbjct: 297 E-IFSNMNIKNFTVSGTRMVHMLCPSKISP--FLHLDFSNNLLTDTVFENCGHLTELETL 353

Query: 413 DFANNSIVGL--IPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTL 470
               N +  L  I E   Q+ +L+ L I+ N ++        +    L    +  N LT 
Sbjct: 354 ILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD 413

Query: 471 GVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQ 530
            +      P ++  L L +  +    P  +   + LQ L + ++ +  + P       + 
Sbjct: 414 TIFRC--LPPRIKVLDLHSNKI-KSIPKQVVKLEALQELNVASNQLKSV-PDGIFDRLTS 469

Query: 531 LKFLDLGQN 539
           L+ + L  N
Sbjct: 470 LQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 94.2 bits (234), Expect = 4e-20
 Identities = 88/491 (17%), Positives = 167/491 (34%), Gaps = 74/491 (15%)

Query: 407 KNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGN 466
           +    L+ + N I  L    +  LS LR+L I+ N++   L    F    +L +  +  N
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHN 79

Query: 467 KLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLK 526
           KL        I                           +L+ L L  ++   +   +   
Sbjct: 80  KLVK------ISCHPT---------------------VNLKHLDLSFNAFDALPICKEFG 112

Query: 527 SASQLKFLDLGQNQIH-GPIPNLTEFTGLLILSVYSNNMSGPLPLIS-SNLVFLDLSNNL 584
           + SQLKFL L    +    +  +       +L V               +     L    
Sbjct: 113 NMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF 172

Query: 585 FSGSISPFLCY------------RINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKL 632
            +     F+               I      N      + L     +  +S   L  ++ 
Sbjct: 173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIET 232

Query: 633 SNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNIL-----VSLKNCTALESLDVGENEFVG 687
           + N F   L   +   T++ +  +   +L G +       S  +  AL    V  + F G
Sbjct: 233 TWNSFIRIL--QLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-G 289

Query: 688 NIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTG 747
              ++I E FS M +     +            ++    LD ++N L+  +     +LT 
Sbjct: 290 FPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTE 349

Query: 748 MVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGK 807
           +           + L L ++    L + A + ++         +  ++ +DIS+N+ S  
Sbjct: 350 L-----------ETLILQMNQLKELSKIAEMTTQ---------MKSLQQLDISQNSVSYD 389

Query: 808 IPLEV-TNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFL 866
                 +  K+L SLN S N  T  I   +     ++ +D  +N++   IP+ +  L  L
Sbjct: 390 EKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEAL 446

Query: 867 NHLNLSNNNLT 877
             LN+++N L 
Sbjct: 447 QELNVASNQLK 457

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 67.2 bits (164), Expect = 1e-11
 Identities = 37/173 (21%), Positives = 61/173 (35%), Gaps = 27/173 (15%)

Query: 122 LKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGM--IPHHLGNLSNLQFLDL 179
           +    +LD S N      +    G +  L  L L   ++  +  I      + +LQ LD+
Sbjct: 323 ISPFLHLDFSNNLLTDT-VFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI 381

Query: 180 SSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKA-FDWLMVT------------------N 220
           S N + Y +     S    L  L++ S  L+   F  L                      
Sbjct: 382 SQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVV 441

Query: 221 KLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFD-----KWFIPSWV 268
           KL +L EL +A+ QL           +SL  + L  N +D       ++  W+
Sbjct: 442 KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 494

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.2 bits (99), Expect = 9e-04
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 3/89 (3%)

Query: 789 DILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFS 848
           D+     +++IS+N  S     ++ +L  L+ L  S+N             + LE +D S
Sbjct: 18  DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS 77

Query: 849 ANQLSGEIPESMSSLTFLNHLNLSNNNLT 877
            N+L  +I         L HL+LS N   
Sbjct: 78  HNKLV-KISC--HPTVNLKHLDLSFNAFD 103

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  120 bits (303), Expect = 4e-29
 Identities = 64/245 (26%), Positives = 103/245 (42%), Gaps = 26/245 (10%)

Query: 124 HLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNY 183
           +   L+L  N  Q I+    F  + +L  L LSR  I  +       L+NL  L+L  N 
Sbjct: 65  NTRLLNLHENQIQIIK-VNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 184 LLYVDNFWWLSGLSFLEHLDLRSVNLSK----AFDWLMVTNKLPSLVELRLANC-QLHHF 238
           L  + N      LS L+ L LR+  +      AF+      ++PSL  L L    +L + 
Sbjct: 124 LTTIPN-GAFVYLSKLKELWLRNNPIESIPSYAFN------RIPSLRRLDLGELKRLSYI 176

Query: 239 SLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPN 298
           S  A    S+L  L+L+     +  IP+         L  L  L  L L  NH ++  P 
Sbjct: 177 SEGAFEGLSNLRYLNLAMCNLRE--IPN---------LTPLIKLDELDLSGNHLSAIRPG 225

Query: 299 WLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKS 358
                +HL+ L +  + +Q  I+  A  NL S+  ++L+ N  +          L +L+ 
Sbjct: 226 SFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNN-LTLLPHDLFTPLHHLER 283

Query: 359 LNLRG 363
           ++L  
Sbjct: 284 IHLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  114 bits (286), Expect = 6e-27
 Identities = 55/227 (24%), Positives = 85/227 (37%), Gaps = 25/227 (11%)

Query: 118 SLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFL 177
           S   L+HL  L LS N  + I+    F  + NL  L L   R+  +       LS L+ L
Sbjct: 83  SFKHLRHLEILQLSRNHIRTIE-IGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKEL 141

Query: 178 DLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNL-----SKAFDWLMVTNKLPSLVELRLAN 232
            L +N +  + ++ + + +  L  LDL  +         AF+       L +L  L LA 
Sbjct: 142 WLRNNPIESIPSYAF-NRIPSLRRLDLGELKRLSYISEGAFE------GLSNLRYLNLAM 194

Query: 233 CQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHF 292
           C L     L       L  LDLS N      I    F       Q L  L+ L +  +  
Sbjct: 195 CNLREIPNL--TPLIKLDELDLSGNHLSA--IRPGSF-------QGLMHLQKLWMIQSQI 243

Query: 293 NSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLN 339
                N       L  ++L++N+L   +  +    L  +  + L  N
Sbjct: 244 QVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 91.3 bits (227), Expect = 2e-19
 Identities = 56/248 (22%), Positives = 97/248 (39%), Gaps = 29/248 (11%)

Query: 199 LEHLDLRSVNLS----KAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDL 254
              L+L    +      +F        L  L  L+L+   +    + A    ++L  L+L
Sbjct: 66  TRLLNLHENQIQIIKVNSFK------HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119

Query: 255 SDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLS-N 313
            DN+     IP+  F         L+ L+ L L +N   S       R   L  L L   
Sbjct: 120 FDNRLTT--IPNGAF-------VYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL 170

Query: 314 NSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEI 373
             L   I   A   L+++ +L+L++    E  IP ++  L  L  L+L G HLS  I   
Sbjct: 171 KRLS-YISEGAFEGLSNLRYLNLAMCNLRE--IP-NLTPLIKLDELDLSGNHLS-AIRP- 224

Query: 374 LDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTL 433
              F G +   L+ L +    I     +     +++V ++ A+N++  L  +    L  L
Sbjct: 225 -GSFQGLMH--LQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL 281

Query: 434 RVLRINDN 441
             + ++ N
Sbjct: 282 ERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 77.9 bits (192), Expect = 5e-15
 Identities = 61/282 (21%), Positives = 102/282 (36%), Gaps = 59/282 (20%)

Query: 406 FKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDG 465
             N   L+   N I  +   S   L  L +L+++ N +  T+    F  L  L+   +  
Sbjct: 63  STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFD 121

Query: 466 NKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFL 525
           N+LT       IP    V L                    L+ L+L N+ I  I P    
Sbjct: 122 NRLT------TIPNGAFVYL------------------SKLKELWLRNNPIESI-PSYAF 156

Query: 526 KSASQLKFLDLGQ-NQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNL 584
                L+ LDLG+  ++   I     F GL                  SNL +L+L+   
Sbjct: 157 NRIPSLRRLDLGELKRLSY-ISEGA-FEGL------------------SNLRYLNLAMCN 196

Query: 585 FSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYS 644
               I             L+ L L+ N+L+   P  +    +L+ L +  ++       +
Sbjct: 197 LR-EIPNL-----TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNA 250

Query: 645 MGSLTSLVWLHLGENRLS---GNILVSLKNCTALESLDVGEN 683
             +L SLV ++L  N L+    ++   L +   LE + +  N
Sbjct: 251 FDNLQSLVEINLAHNNLTLLPHDLFTPLHH---LERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 77.1 bits (190), Expect = 8e-15
 Identities = 40/145 (27%), Positives = 56/145 (38%), Gaps = 15/145 (10%)

Query: 121 DLKHLSYLDLS-FNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDL 179
            +  L  LDL        I     F  + NLRYLNL+   +  +   +L  L  L  LDL
Sbjct: 158 RIPSLRRLDLGELKRLSYIS-EGAFEGLSNLRYLNLAMCNLREI--PNLTPLIKLDELDL 214

Query: 180 SSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSK----AFDWLMVTNKLPSLVELRLANCQL 235
           S N+L  +       GL  L+ L +    +      AFD       L SLVE+ LA+  L
Sbjct: 215 SGNHLSAIRP-GSFQGLMHLQKLWMIQSQIQVIERNAFD------NLQSLVEINLAHNNL 267

Query: 236 HHFSLLATANFSSLTVLDLSDNQFD 260
                        L  + L  N ++
Sbjct: 268 TLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 75.2 bits (185), Expect = 3e-14
 Identities = 61/318 (19%), Positives = 104/318 (32%), Gaps = 72/318 (22%)

Query: 281 SLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNM 340
               +     +    +P+ +    +   L+L  N +Q  I   +  +L  +  L LS N 
Sbjct: 44  QFSKVICVRKNL-REVPDGI--STNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNH 99

Query: 341 GIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLT 400
            I      +   L NL +L L    L+  I      F       L+ L LR         
Sbjct: 100 -IRTIEIGAFNGLANLNTLELFDNRLT-TIPN--GAFVYLSK--LKELWLR--------- 144

Query: 401 DQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSW 460
                          NN I  +   +  ++ +LR L + + K    +S   F  L+ L +
Sbjct: 145 ---------------NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRY 189

Query: 461 FRVDGNKLTLGVKHDWIPPF----QLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSI 516
             +    L        IP      +L  L L   ++ +  P       HLQ L+++ S I
Sbjct: 190 LNLAMCNLRE------IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI 243

Query: 517 SDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLV 576
             I       +   L  ++L  N +   +P+   FT L                   +L 
Sbjct: 244 QVI-ERNAFDNLQSLVEINLAHNNLTL-LPHDL-FTPL------------------HHLE 282

Query: 577 FLDLSNNLFSGSISPFLC 594
            + L +N       P+ C
Sbjct: 283 RIHLHHN-------PWNC 293

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 68.2 bits (167), Expect = 4e-12
 Identities = 49/252 (19%), Positives = 85/252 (33%), Gaps = 48/252 (19%)

Query: 626 NLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEF 685
           N + L L  N+       S   L  L  L L  N +    + +      L +L++ +N  
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR- 123

Query: 686 VGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNL 745
           +  IP       S++  L LR+N            +  L+ LD+ +      I       
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE--GAF 181

Query: 746 TGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFS 805
            G+                                           NL R ++++  N  
Sbjct: 182 EGLS------------------------------------------NL-RYLNLAMCNLR 198

Query: 806 GKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTF 865
            +IP  +T L  L  L+ S N  +   P S   +  L+ +    +Q+      +  +L  
Sbjct: 199 -EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS 256

Query: 866 LNHLNLSNNNLT 877
           L  +NL++NNLT
Sbjct: 257 LVEINLAHNNLT 268

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 62.5 bits (152), Expect = 3e-10
 Identities = 55/280 (19%), Positives = 97/280 (34%), Gaps = 58/280 (20%)

Query: 602 SLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRL 661
           +   L L++N +     + +   ++L+ L+LS N        +   L +L  L L +NRL
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124

Query: 662 SG---NILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTG- 717
           +       V L     L+ L +  N    +IP++   R   +  L L   K    +  G 
Sbjct: 125 TTIPNGAFVYLSK---LKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGA 180

Query: 718 LCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKAS 777
              L+ L+ L++A  NL   IP             + T                      
Sbjct: 181 FEGLSNLRYLNLAMCNLR-EIP-------------NLTP--------------------- 205

Query: 778 VVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEV-TNLKALQSLNFSYNSFTGRIPESI 836
                        L  +  +D+S N+ S  I       L  LQ L    +        + 
Sbjct: 206 -------------LIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAF 251

Query: 837 GVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNL 876
             ++SL  I+ + N L+    +  + L  L  ++L +N  
Sbjct: 252 DNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 61.3 bits (149), Expect = 7e-10
 Identities = 56/225 (24%), Positives = 78/225 (34%), Gaps = 40/225 (17%)

Query: 529 SQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGS 588
           +  + L+L +NQI   I   + F  L                   +L  L LS N    +
Sbjct: 64  TNTRLLNLHENQIQI-IKVNS-FKHL------------------RHLEILQLSRNHIR-T 102

Query: 589 ISP--FLCYRINETKSLNALQLNDNYLNGELPDCWMSY-QNLKTLKLSNNKFTGNLPYSM 645
           I    F     N   +LN L+L DN L   +P+    Y   LK L L NN       Y+ 
Sbjct: 103 IEIGAF-----NGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAF 156

Query: 646 GSLTSLVWLHLGEN----RLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMV 701
             + SL  L LGE      +S      L N   L  L++        IP        ++ 
Sbjct: 157 NRIPSLRRLDLGELKRLSYISEGAFEGLSN---LRYLNLAMCNLR-EIPNL--TPLIKLD 210

Query: 702 VLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLT 746
            L L  N      P     L  LQ L +  + +     N  +NL 
Sbjct: 211 ELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ 255

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 43.2 bits (102), Expect = 4e-04
 Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 3/98 (3%)

Query: 788 EDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDF 847
           + I    R++++  N           +L+ L+ L  S N        +   + +L +++ 
Sbjct: 60  DGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119

Query: 848 SANQLSGEIPESM-SSLTFLNHLNLSNNNLTGKIPSST 884
             N+L+  IP      L+ L  L L NN +   IPS  
Sbjct: 120 FDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYA 155

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  120 bits (302), Expect = 7e-29
 Identities = 61/245 (24%), Positives = 97/245 (39%), Gaps = 26/245 (10%)

Query: 124 HLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNY 183
           +  YL+L  N+ Q IQ    F  + +L  L L R  I  +       L++L  L+L  N+
Sbjct: 76  NTRYLNLMENNIQMIQ-ADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134

Query: 184 LLYVDNFWWLSGLSFLEHLDLRSVNLSK----AFDWLMVTNKLPSLVELRLANC-QLHHF 238
           L  + +      LS L  L LR+  +      AF+      ++PSL+ L L    +L + 
Sbjct: 135 LTVIPSG-AFEYLSKLRELWLRNNPIESIPSYAFN------RVPSLMRLDLGELKKLEYI 187

Query: 239 SLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPN 298
           S  A     +L  L+L         +P+         L  L  L  L +  NHF    P 
Sbjct: 188 SEGAFEGLFNLKYLNLGMCNIKD--MPN---------LTPLVGLEELEMSGNHFPEIRPG 236

Query: 299 WLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKS 358
             +    L+ L + N+ +   I+  A   L S+  L+L+ N  +          L  L  
Sbjct: 237 SFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNN-LSSLPHDLFTPLRYLVE 294

Query: 359 LNLRG 363
           L+L  
Sbjct: 295 LHLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 99.1 bits (247), Expect = 6e-22
 Identities = 47/213 (22%), Positives = 74/213 (34%), Gaps = 24/213 (11%)

Query: 122 LKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSS 181
           L HL  L L  N  + I+    F  + +L  L L    +  +       LS L+ L L +
Sbjct: 98  LHHLEVLQLGRNSIRQIE-VGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRN 156

Query: 182 NYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLL 241
           N +  + ++ + + +  L  LDL  +   +          L +L  L L  C +     L
Sbjct: 157 NPIESIPSYAF-NRVPSLMRLDLGELKKLEYISEGAFEG-LFNLKYLNLGMCNIKDMPNL 214

Query: 242 ATANFSSLTVLDLSDNQFDKWFIPSWVFGP----------------IPRG-LQNLTSLRH 284
                  L  L++S N F +  I    F                  I R     L SL  
Sbjct: 215 T--PLVGLEELEMSGNHFPE--IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVE 270

Query: 285 LGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQ 317
           L L  N+ +S   +      +L  L L +N   
Sbjct: 271 LNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 91.3 bits (227), Expect = 2e-19
 Identities = 58/247 (23%), Positives = 94/247 (38%), Gaps = 27/247 (10%)

Query: 199 LEHLDLRSVNLS----KAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDL 254
             +L+L   N+       F        L  L  L+L    +    + A    +SL  L+L
Sbjct: 77  TRYLNLMENNIQMIQADTFR------HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130

Query: 255 SDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNN 314
            DN      IPS  F       + L+ LR L L +N   S       R   L  L L   
Sbjct: 131 FDNWLT--VIPSGAF-------EYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL 181

Query: 315 SLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEIL 374
                I   A   L ++ +L+L +   I+  +P ++  L  L+ L + G H   EI    
Sbjct: 182 KKLEYISEGAFEGLFNLKYLNLGMCN-IK-DMP-NLTPLVGLEELEMSGNHFP-EIRP-- 235

Query: 375 DIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLR 434
             F G  S  L+ L + +  +     +      ++V L+ A+N++  L  +    L  L 
Sbjct: 236 GSFHGLSS--LKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV 293

Query: 435 VLRINDN 441
            L ++ N
Sbjct: 294 ELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 91.0 bits (226), Expect = 3e-19
 Identities = 40/178 (22%), Positives = 67/178 (37%), Gaps = 24/178 (13%)

Query: 118 SLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRT-RIGGMIPHHLGNLSNLQF 176
           +   L  L  L L  N  + I     F  + +L  L+L    ++  +       L NL++
Sbjct: 142 AFEYLSKLRELWLRNNPIESIP-SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKY 200

Query: 177 LDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSK----AFDWLMVTNKLPSLVELRLAN 232
           L+L    +  + N    + L  LE L++   +  +    +F        L SL +L + N
Sbjct: 201 LNLGMCNIKDMPNL---TPLVGLEELEMSGNHFPEIRPGSFH------GLSSLKKLWVMN 251

Query: 233 CQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSN 290
            Q+      A    +SL  L+L+ N      +P  +F         L  L  L L  N
Sbjct: 252 SQVSLIERNAFDGLASLVELNLAHNNLS--SLPHDLF-------TPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 76.7 bits (189), Expect = 1e-14
 Identities = 61/323 (18%), Positives = 101/323 (31%), Gaps = 82/323 (25%)

Query: 281 SLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNM 340
               +        S +P  +    +  YL+L  N++Q  I ++   +L  +  L L  N 
Sbjct: 55  QFSKVVCTRRGL-SEVPQGI--PSNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRN- 109

Query: 341 GIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLT 400
            I      +   L +L +L L    L+  I      F       L  L LR         
Sbjct: 110 SIRQIEVGAFNGLASLNTLELFDNWLT-VIPS--GAFEYLSK--LRELWLR--------- 155

Query: 401 DQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSW 460
                          NN I  +   +  ++ +L  L + + K    +S   F  L  L +
Sbjct: 156 ---------------NNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKY 200

Query: 461 FRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIF 520
             +    +        +P        L                  L+ L +  +   +I 
Sbjct: 201 LNLGMCNIKD------MPNLT----PLVG----------------LEELEMSGNHFPEIR 234

Query: 521 PIRFLKSASQLKFLDLGQNQIHGPIPN--LTEFTGLLILSVYSNNMS-------GPLPLI 571
           P  F    S LK L +  +Q+   I          L+ L++  NN+S        PL   
Sbjct: 235 PGSF-HGLSSLKKLWVMNSQVSL-IERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR-- 290

Query: 572 SSNLVFLDLSNNLFSGSISPFLC 594
              LV L L +N       P+ C
Sbjct: 291 --YLVELHLHHN-------PWNC 304

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 76.3 bits (188), Expect = 1e-14
 Identities = 42/145 (28%), Positives = 59/145 (40%), Gaps = 15/145 (10%)

Query: 121 DLKHLSYLDLS-FNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDL 179
            +  L  LDL      + I     F  + NL+YLNL    I  M   +L  L  L+ L++
Sbjct: 169 RVPSLMRLDLGELKKLEYIS-EGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEM 225

Query: 180 SSNYLLYVDNFWWLSGLSFLEHLDLRSVNLS----KAFDWLMVTNKLPSLVELRLANCQL 235
           S N+   +       GLS L+ L + +  +S     AFD       L SLVEL LA+  L
Sbjct: 226 SGNHFPEIRPGS-FHGLSSLKKLWVMNSQVSLIERNAFD------GLASLVELNLAHNNL 278

Query: 236 HHFSLLATANFSSLTVLDLSDNQFD 260
                        L  L L  N ++
Sbjct: 279 SSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 70.9 bits (174), Expect = 7e-13
 Identities = 58/307 (18%), Positives = 97/307 (31%), Gaps = 78/307 (25%)

Query: 406 FKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDG 465
             N   L+   N+I  +  ++   L  L VL++  N +   +    F  L  L+   +  
Sbjct: 74  PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFD 132

Query: 466 NKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFL 525
           N LT+      IP      L                    L+ L+L N+ I  I P    
Sbjct: 133 NWLTV------IPSGAFEYLS------------------KLRELWLRNNPIESI-PSYAF 167

Query: 526 KSASQLKFLDLGQ-NQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNL 584
                L  LDLG+  ++   I     F GL                   NL +L+L    
Sbjct: 168 NRVPSLMRLDLGELKKLEY-ISEGA-FEGL------------------FNLKYLNLGMCN 207

Query: 585 FSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYS 644
               +                                     L+ L++S N F    P S
Sbjct: 208 IK-DMPNL-----------------------------TPLVGLEELEMSGNHFPEIRPGS 237

Query: 645 MGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLI 704
              L+SL  L +  +++S     +     +L  L++  N    ++P  +      +V L 
Sbjct: 238 FHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELH 296

Query: 705 LRSNKFH 711
           L  N ++
Sbjct: 297 LHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 69.0 bits (169), Expect = 3e-12
 Identities = 53/253 (20%), Positives = 87/253 (34%), Gaps = 50/253 (19%)

Query: 626 NLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILV-SLKNCTALESLDVGENE 684
           N + L L  N        +   L  L  L LG N +   I V +     +L +L++ +N 
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNW 134

Query: 685 FVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINN 744
            +  IP+   E  S++  L LR+N            +  L  LD+ +      I      
Sbjct: 135 -LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE--GA 191

Query: 745 LTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNF 804
             G+                                           NL + +++   N 
Sbjct: 192 FEGLF------------------------------------------NL-KYLNLGMCNI 208

Query: 805 SGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLT 864
              +P  +T L  L+ L  S N F    P S   + SL+ +    +Q+S     +   L 
Sbjct: 209 K-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLA 266

Query: 865 FLNHLNLSNNNLT 877
            L  LNL++NNL+
Sbjct: 267 SLVELNLAHNNLS 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 64.8 bits (158), Expect = 6e-11
 Identities = 56/309 (18%), Positives = 95/309 (30%), Gaps = 82/309 (26%)

Query: 571 ISSNLVFLDLSNNLFSGSISP--FLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLK 628
           I SN  +L+L  N     I    F          L  LQL  N +       +    +L 
Sbjct: 73  IPSNTRYLNLMENNIQ-MIQADTFRHLH-----HLEVLQLGRNSIRQIEVGAFNGLASLN 126

Query: 629 TLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGN 688
           TL+L +N  T     +   L+ L  L L  N +      +     +L  LD+GE + +  
Sbjct: 127 TLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEY 186

Query: 689 IPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGM 748
           I                    F G        L  L+ L++   N+              
Sbjct: 187 IS----------------EGAFEG--------LFNLKYLNLGMCNIK------------- 209

Query: 749 VTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKI 808
                    +    PL                            L   +++S N+F  +I
Sbjct: 210 --------DMPNLTPLV--------------------------GL-EELEMSGNHFP-EI 233

Query: 809 PLEV-TNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLN 867
                  L +L+ L    +  +     +   + SL  ++ + N LS    +  + L +L 
Sbjct: 234 RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV 293

Query: 868 HLNLSNNNL 876
            L+L +N  
Sbjct: 294 ELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 62.1 bits (151), Expect = 5e-10
 Identities = 53/222 (23%), Positives = 82/222 (36%), Gaps = 34/222 (15%)

Query: 529 SQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGS 588
           S  ++L+L +N I   I   T F  L                   +L  L L  N     
Sbjct: 75  SNTRYLNLMENNIQM-IQADT-FRHL------------------HHLEVLQLGRNSIR-Q 113

Query: 589 ISP--FLCYRINETKSLNALQLNDNYLNGELPDCWMSY-QNLKTLKLSNNKFTGNLPYSM 645
           I    F     N   SLN L+L DN+L   +P     Y   L+ L L NN       Y+ 
Sbjct: 114 IEVGAF-----NGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAF 167

Query: 646 GSLTSLVWLHLGE-NRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLI 704
             + SL+ L LGE  +L      + +    L+ L++G      ++P         +  L 
Sbjct: 168 NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPNLTP--LVGLEELE 224

Query: 705 LRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLT 746
           +  N F    P     L+ L+ L + ++ +S    N  + L 
Sbjct: 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLA 266

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 58.2 bits (141), Expect = 6e-09
 Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 6/92 (6%)

Query: 117 PSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQF 176
           P+L  L  L  L++S N F  I+ P  F  + +L+ L +  +++  +  +    L++L  
Sbjct: 212 PNLTPLVGLEELEMSGNHFPEIR-PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVE 270

Query: 177 LDLSSNYL--LYVDNFWWLSGLSFLEHLDLRS 206
           L+L+ N L  L  D F   + L +L  L L  
Sbjct: 271 LNLAHNNLSSLPHDLF---TPLRYLVELHLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 34/206 (16%), Positives = 62/206 (30%), Gaps = 36/206 (17%)

Query: 689 IPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGM 748
           +P  I    S    L L  N            L  L++L +  N++        N L  +
Sbjct: 69  VPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASL 125

Query: 749 ------------VTACSFTRSVQ-QYLPL---PIDVGVILVEKASVVSKGEMVDYEDILN 792
                       + + +F    + + L L   PI            +           + 
Sbjct: 126 NTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPI----------ESIPSYAFNR----VP 171

Query: 793 LVRMIDISRNNFSGKIPLEV-TNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQ 851
            +  +D+        I       L  L+ LN    +    +P     +  LE ++ S N 
Sbjct: 172 SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPNLTP-LVGLEELEMSGNH 229

Query: 852 LSGEIPESMSSLTFLNHLNLSNNNLT 877
                P S   L+ L  L + N+ ++
Sbjct: 230 FPEIRPGSFHGLSSLKKLWVMNSQVS 255

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  116 bits (293), Expect = 2e-28
 Identities = 62/347 (17%), Positives = 126/347 (36%), Gaps = 51/347 (14%)

Query: 124 HLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNY 183
           HL  +  S    +  ++P+      +   L+L   +I  +      NL NL  L L +N 
Sbjct: 32  HLRVVQCSDLGLE--KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 87

Query: 184 LLYVDN--FWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLL 241
           +  +    F   + L  LE L L    L +     +      +L ELR+   ++      
Sbjct: 88  ISKISPGAF---APLVKLERLYLSKNQLKE-----LPEKMPKTLQELRVHENEITKVRKS 139

Query: 242 ATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLY 301
                + + V++L  N      I +  F       Q +  L ++ +   +  ++IP  L 
Sbjct: 140 VFNGLNQMIVVELGTNPLKSSGIENGAF-------QGMKKLSYIRIADTNI-TTIPQGL- 190

Query: 302 RFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNL 361
               L  L L  N +   +D+ +L  L +++ L LS N  I      S+A+  +L+ L+L
Sbjct: 191 -PPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHL 247

Query: 362 RGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVG 421
               L     ++    +      ++ + L +++I             I + DF       
Sbjct: 248 NNNKL----VKVPGGLADHKY--IQVVYLHNNNI-----------SAIGSNDFCP----- 285

Query: 422 LIPESLGQLSTLRVLRINDNKLNGT-LSAIHFANLTKLSWFRVDGNK 467
             P    + ++   + +  N +    +    F  +   +  ++   K
Sbjct: 286 --PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  105 bits (265), Expect = 8e-25
 Identities = 47/254 (18%), Positives = 85/254 (33%), Gaps = 28/254 (11%)

Query: 118 SLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFL 177
           +   L  L  L LS N  + +           L+ L +    I  +       L+ +  +
Sbjct: 95  AFAPLVKLERLYLSKNQLKELPEKMP----KTLQELRVHENEITKVRKSVFNGLNQMIVV 150

Query: 178 DLSSNYLLYVD-NFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLH 236
           +L +N L           G+  L ++ +   N++      +     PSL EL L   ++ 
Sbjct: 151 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-----IPQGLPPSLTELHLDGNKIT 205

Query: 237 HFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSI 296
                +    ++L  L LS N      + +           N   LR L L++N     +
Sbjct: 206 KVDAASLKGLNNLAKLGLSFNSISA--VDNGSL-------ANTPHLRELHLNNNKL-VKV 255

Query: 297 PNWLYRFIHLEYLSLSNNSLQGTIDSEA------LGNLTSISWLDLSLNMGIEGRIPRSM 350
           P  L    +++ + L NN++   I S             S S + L  N      I  S 
Sbjct: 256 PGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPST 314

Query: 351 -ASLCNLKSLNLRG 363
              +    ++ L  
Sbjct: 315 FRCVYVRAAVQLGN 328

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 94.7 bits (236), Expect = 4e-21
 Identities = 67/389 (17%), Positives = 111/389 (28%), Gaps = 99/389 (25%)

Query: 281 SLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNM 340
            LR +          +P  L        L L NN +   I      NL ++  L L  N 
Sbjct: 32  HLRVVQCSDLGL-EKVPKDL--PPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINN- 86

Query: 341 GIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLT 400
            I    P + A L  L+ L L                     N L+ L            
Sbjct: 87  KISKISPGAFAPLVKLERLYLSK-------------------NQLKEL------------ 115

Query: 401 DQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKL-NGTLSAIHFANLTKLS 459
                 K +  L    N I  +       L+ + V+ +  N L +  +    F  + KLS
Sbjct: 116 -PEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 174

Query: 460 WFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDI 519
           + R+    +T       IP                           L  L+L  + I+ +
Sbjct: 175 YIRIADTNIT------TIPQGLP---------------------PSLTELHLDGNKITKV 207

Query: 520 FPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLD 579
                LK  + L  L L  N I   + N +                        +L  L 
Sbjct: 208 -DAASLKGLNNLAKLGLSFNSISA-VDNGS-LANT------------------PHLRELH 246

Query: 580 LSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNG------ELPDCWMSYQNLKTLKLS 633
           L+NN     +   L     + K +  + L++N ++         P       +   + L 
Sbjct: 247 LNNNKLV-KVPGGL----ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLF 301

Query: 634 NNKFTGNL--PYSMGSLTSLVWLHLGENR 660
           +N        P +   +     + LG  +
Sbjct: 302 SNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 91.2 bits (227), Expect = 6e-20
 Identities = 61/335 (18%), Positives = 111/335 (33%), Gaps = 64/335 (19%)

Query: 406 FKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDG 465
             +   LD  NN I  +       L  L  L + +NK++  +S   FA L KL    +  
Sbjct: 51  PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSK 109

Query: 466 NKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFL 525
           N+L        +P                         K LQ L +  + I+ +    F 
Sbjct: 110 NQLKE------LPEKMP---------------------KTLQELRVHENEITKVRKSVF- 141

Query: 526 KSASQLKFLDLGQNQIH-GPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNL 584
              +Q+  ++LG N +    I N   F G+                    L ++ +++  
Sbjct: 142 NGLNQMIVVELGTNPLKSSGIENGA-FQGM------------------KKLSYIRIADTN 182

Query: 585 FSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYS 644
            + +I   L        SL  L L+ N +            NL  L LS N  +     S
Sbjct: 183 IT-TIPQGLP------PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 235

Query: 645 MGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGEN--EFVGN---IPTWIGERFSR 699
           + +   L  LHL  N+L   +   L +   ++ + +  N    +G+    P     + + 
Sbjct: 236 LANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKAS 294

Query: 700 MVVLILRSNKF-HGPLPTGL-CDLAFLQILDIADN 732
              + L SN   +  +       +     + + + 
Sbjct: 295 YSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 78.9 bits (195), Expect = 7e-16
 Identities = 35/179 (19%), Positives = 58/179 (32%), Gaps = 27/179 (15%)

Query: 121 DLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLS 180
            +K LSY+ ++  +   I      G   +L  L+L   +I  +    L  L+NL  L LS
Sbjct: 169 GMKKLSYIRIADTNITTIP----QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 224

Query: 181 SNYLLYVDNFWWLSGLSFLEHLDLRSVNLSK---AFDWLMVTNKLPSLVELRLANCQLHH 237
            N +  VDN    +    L  L L +  L K                +  + L N  +  
Sbjct: 225 FNSISAVDNGSL-ANTPHLRELHLNNNKLVKVPGGLA------DHKYIQVVYLHNNNISA 277

Query: 238 FS------LLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSN 290
                          +S + + L  N    W I    F       + +     + L + 
Sbjct: 278 IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF-------RCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 74.3 bits (183), Expect = 2e-14
 Identities = 51/236 (21%), Positives = 92/236 (38%), Gaps = 15/236 (6%)

Query: 504 KHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPN--LTEFTGLLILSVYS 561
                L L N+ I++I    F K+   L  L L  N+I   I          L  L +  
Sbjct: 52  PDTALLDLQNNKITEIKDGDF-KNLKNLHTLILINNKISK-ISPGAFAPLVKLERLYLSK 109

Query: 562 NNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYL-NGELPDC 620
           N +      +   L  L +  N  +  +   +    N    +  ++L  N L +  + + 
Sbjct: 110 NQLKELPEKMPKTLQELRVHENEIT-KVRKSV---FNGLNQMIVVELGTNPLKSSGIENG 165

Query: 621 WMSY-QNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLD 679
                + L  +++++   T  +P   G   SL  LHL  N+++     SLK    L  L 
Sbjct: 166 AFQGMKKLSYIRIADTNIT-TIP--QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLG 222

Query: 680 VGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLS 735
           +  N  +  +          +  L L +NK    +P GL D  ++Q++ + +NN+S
Sbjct: 223 LSFNS-ISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 73.5 bits (181), Expect = 4e-14
 Identities = 65/356 (18%), Positives = 108/356 (30%), Gaps = 92/356 (25%)

Query: 531 LKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSIS 590
              LDL  N+I   I +  +F  L                   NL  L L NN  S  IS
Sbjct: 54  TALLDLQNNKITE-IKD-GDFKNL------------------KNLHTLILINNKIS-KIS 92

Query: 591 P--FLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSL 648
           P  F          L  L L+ N L  ELP+     + L+ L++  N+ T         L
Sbjct: 93  PGAF-----APLVKLERLYLSKNQLK-ELPE--KMPKTLQELRVHENEITKVRKSVFNGL 144

Query: 649 TSLVWLHLGENRLSGNILVS--LKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILR 706
             ++ + LG N L  + + +   +    L  + + +      IP  +      +  L L 
Sbjct: 145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL---PPSLTELHLD 200

Query: 707 SNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPI 766
            NK        L  L  L  L ++ N++S      + N   +                  
Sbjct: 201 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL------------------ 242

Query: 767 DVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYN 826
                                       R + ++ N    K+P  + + K +Q +    N
Sbjct: 243 ----------------------------RELHLNNNKLV-KVPGGLADHKYIQVVYLHNN 273

Query: 827 SFTG------RIPESIGVMRSLESIDFSANQLS-GEIPESM-SSLTFLNHLNLSNN 874
           + +         P       S   +   +N +   EI  S    +     + L N 
Sbjct: 274 NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 70.8 bits (174), Expect = 3e-13
 Identities = 54/329 (16%), Positives = 109/329 (33%), Gaps = 79/329 (24%)

Query: 571 ISSNLVFLDLSNNLFSGSISP--FLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLK 628
           +  +   LDL NN  +  I    F   +     +L+ L L +N ++   P  +     L+
Sbjct: 50  LPPDTALLDLQNNKIT-EIKDGDFKNLK-----NLHTLILINNKISKISPGAFAPLVKLE 103

Query: 629 TLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLS---GNILVSLKNCTALESLDVGENEF 685
            L LS N+    LP       +L  L + EN ++    ++   L     +  +++G N  
Sbjct: 104 RLYLSKNQLK-ELP--EKMPKTLQELRVHENEITKVRKSVFNGLNQ---MIVVELGTNPL 157

Query: 686 -VGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINN 744
               I     +   ++  + +        +P GL     L  L +  N ++         
Sbjct: 158 KSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTELHLDGNKIT--------- 205

Query: 745 LTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNF 804
               V A S                                     LN +  + +S N+ 
Sbjct: 206 ---KVDAASLKG----------------------------------LNNLAKLGLSFNSI 228

Query: 805 SGKIPLEV-TNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESM--- 860
           S  +      N   L+ L+ + N    ++P  +   + ++ +    N +S  I  +    
Sbjct: 229 S-AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCP 285

Query: 861 ----SSLTFLNHLNLSNNNLT-GKIPSST 884
               +     + ++L +N +   +I  ST
Sbjct: 286 PGYNTKKASYSGVSLFSNPVQYWEIQPST 314

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 61.9 bits (151), Expect = 3e-10
 Identities = 47/272 (17%), Positives = 91/272 (33%), Gaps = 56/272 (20%)

Query: 626 NLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEF 685
           +   L L NNK T        +L +L  L L  N++S     +      LE L + +N+ 
Sbjct: 53  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112

Query: 686 VGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNL 745
              +P    +    +  L +  N+      +    L  + ++++  N L           
Sbjct: 113 K-ELPE---KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK---------- 158

Query: 746 TGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFS 805
           +  +   +F                                    +  +  I I+  N +
Sbjct: 159 SSGIENGAFQG----------------------------------MKKLSYIRIADTNIT 184

Query: 806 GKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTF 865
             IP  +    +L  L+   N  T     S+  + +L  +  S N +S     S+++   
Sbjct: 185 -TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH 241

Query: 866 LNHLNLSNNNLTGKIPSS----TQLQSFDVSS 893
           L  L+L+NN L  K+P        +Q   + +
Sbjct: 242 LRELHLNNNKLV-KVPGGLADHKYIQVVYLHN 272

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  114 bits (287), Expect = 1e-27
 Identities = 62/329 (18%), Positives = 97/329 (29%), Gaps = 35/329 (10%)

Query: 149 NLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVN 208
               L    +         L         D +  +       W  +  +  +        
Sbjct: 13  GRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSA-----WRQANSNNPQIETRTGRA 67

Query: 209 LSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWV 268
           L    D L      P  V L L +  L  F        S L  + +      +       
Sbjct: 68  LKATADLLEDA-TQPGRVALELRSVPLPQFPD-QAFRLSHLQHMTIDAAGLME------- 118

Query: 269 FGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNN--------SLQGTI 320
              +P  +Q    L  L L  N    ++P  +     L  LS+            L  T 
Sbjct: 119 ---LPDTMQQFAGLETLTLARNPL-RALPASIASLNRLRELSIRACPELTELPEPLASTD 174

Query: 321 DSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGC 380
            S     L ++  L L    GI   +P S+A+L NLKSL +R   LS     +       
Sbjct: 175 ASGEHQGLVNLQSLRLEWT-GIR-SLPASIANLQNLKSLKIRNSPLS----ALGPAIHHL 228

Query: 381 VSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRIND 440
               LE LDLR  +   +     G    +  L   + S +  +P  + +L+ L  L +  
Sbjct: 229 PK--LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286

Query: 441 NKLNGTLSAIHFANLTKLSWFRVDGNKLT 469
                 L +   A L       V  +   
Sbjct: 287 CVNLSRLPS-LIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  108 bits (272), Expect = 1e-25
 Identities = 46/264 (17%), Positives = 89/264 (33%), Gaps = 29/264 (10%)

Query: 120 LDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDL 179
                   L+L        Q P     + +L+++ +    +   +P  +   + L+ L L
Sbjct: 78  ATQPGRVALELRSVPLP--QFPDQAFRLSHLQHMTIDAAGLME-LPDTMQQFAGLETLTL 134

Query: 180 SSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAF-------DWLMVTNKLPSLVELRLAN 232
           + N L  +     ++ L+ L  L +R+              D       L +L  LRL  
Sbjct: 135 ARNPLRALPA--SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEW 192

Query: 233 CQLHHF--SLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSN 290
             +     S+   AN  +L  L + ++              +   + +L  L  L L   
Sbjct: 193 TGIRSLPASI---ANLQNLKSLKIRNSPLSA----------LGPAIHHLPKLEELDLRGC 239

Query: 291 HFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSM 350
               + P        L+ L L + S   T+  + +  LT +  LDL   + +  R+P  +
Sbjct: 240 TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD-IHRLTQLEKLDLRGCVNLS-RLPSLI 297

Query: 351 ASLCNLKSLNLRGVHLSQEISEIL 374
           A L     + +     +Q      
Sbjct: 298 AQLPANCIILVPPHLQAQLDQHRP 321

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  105 bits (263), Expect = 1e-24
 Identities = 49/364 (13%), Positives = 97/364 (26%), Gaps = 64/364 (17%)

Query: 523 RFLKSASQLKFLDL-GQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLS 581
                +S  + L   G   +      L+++           + +      S+N      +
Sbjct: 6   HHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN-SNNPQIETRT 64

Query: 582 NNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNL 641
                 +             +L    L    L  + PD      +L+ + +        L
Sbjct: 65  GRALKATADLLEDATQPGRVALE---LRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-EL 119

Query: 642 PYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIG------- 694
           P +M     L  L L  N L   +  S+ +   L  L +     +  +P  +        
Sbjct: 120 PDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178

Query: 695 -ERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACS 753
            +    +  L L        LP  + +L  L+ L I ++ LS A+   I++L  +     
Sbjct: 179 HQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEE--- 233

Query: 754 FTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVT 813
                                                      +D+         P    
Sbjct: 234 -------------------------------------------LDLRGCTALRNYPPIFG 250

Query: 814 NLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSN 873
               L+ L     S    +P  I  +  LE +D         +P  ++ L     + +  
Sbjct: 251 GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310

Query: 874 NNLT 877
           +   
Sbjct: 311 HLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  102 bits (257), Expect = 7e-24
 Identities = 47/349 (13%), Positives = 91/349 (26%), Gaps = 83/349 (23%)

Query: 552 TGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDN 611
           +G   L    +    P   + S       ++            +      + N  Q+   
Sbjct: 12  SGRENLYFQGSTALRPYHDVLSQWQRHYNADR--------NRWHSAWRQANSNNPQIETR 63

Query: 612 YLNG--ELPDCW--MSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILV 667
                    D     +      L+L +       P     L+ L  + +    L   +  
Sbjct: 64  TGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPD 121

Query: 668 SLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQIL 727
           +++    LE+L +  N                     LR+      LP  +  L  L+ L
Sbjct: 122 TMQQFAGLETLTLARNP--------------------LRA------LPASIASLNRLREL 155

Query: 728 DIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDY 787
            I        +P  + +                                           
Sbjct: 156 SIRACPELTELPEPLASTDASGEHQGLV-------------------------------- 183

Query: 788 EDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDF 847
               NL + + +        +P  + NL+ L+SL    +  +  +  +I  +  LE +D 
Sbjct: 184 ----NL-QSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDL 236

Query: 848 SANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSS----TQLQSFDVS 892
                    P        L  L L + +    +P      TQL+  D+ 
Sbjct: 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLR 285

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 94.6 bits (236), Expect = 4e-21
 Identities = 61/346 (17%), Positives = 114/346 (32%), Gaps = 30/346 (8%)

Query: 397 GHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLT 456
           G              L F  ++ +    + L Q         N             AN  
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQ-----ANSN 56

Query: 457 KLSWFRVDGNKLTLGVKH-DWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSS 515
                   G  L       +       VAL LR+  +  +FP   +   HLQ + +  + 
Sbjct: 57  NPQIETRTGRALKATADLLEDATQPGRVALELRSVPL-PQFPDQAFRLSHLQHMTIDAAG 115

Query: 516 ISDIFPIRFLKSASQLKFLDLGQNQIHGPIPN-LTEFTGLLILSVYSNNMSGPLPLISSN 574
           + ++     ++  + L+ L L +N +   +P  +     L  LS+ +      LP   ++
Sbjct: 116 LMELPDT--MQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLAS 172

Query: 575 LVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSN 634
                    L                 +L +L+L    +   LP    + QNLK+LK+ N
Sbjct: 173 TDASGEHQGL----------------VNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRN 215

Query: 635 NKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIG 694
           +  +  L  ++  L  L  L L       N          L+ L + +   +  +P  I 
Sbjct: 216 SPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH 274

Query: 695 ERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPN 740
            R +++  L LR       LP+ +  L    I+ +  +  +    +
Sbjct: 275 -RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 85.0 bits (211), Expect = 7e-18
 Identities = 59/355 (16%), Positives = 108/355 (30%), Gaps = 53/355 (14%)

Query: 306 LEYLSLSN-NSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGV 364
            E L      +L+   D   L         D +           S     N  +  +   
Sbjct: 14  RENLYFQGSTALRPYHDV--LSQWQRHYNADRNR--------WHSAWRQANSNNPQIETR 63

Query: 365 HLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIP 424
                +    D+       G  +L+LRS  +     DQ  +  ++  +      ++ L P
Sbjct: 64  TGRA-LKATADLLEDATQPGRVALELRSVPL-PQFPDQAFRLSHLQHMTIDAAGLMEL-P 120

Query: 425 ESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDG-NKLTLGVKHDWIPPFQLV 483
           +++ Q + L  L +  N L    ++I  A+L +L    +    +LT       +P     
Sbjct: 121 DTMQQFAGLETLTLARNPLRALPASI--ASLNRLRELSIRACPELTE------LPE---- 168

Query: 484 ALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFP--IRFLKSASQLKFLDLGQNQI 541
              L +               +LQ L L  + I  + P  I  L++   LK L +  + +
Sbjct: 169 --PLAST----DASGEHQGLVNLQSLRLEWTGIRSL-PASIANLQN---LKSLKIRNSPL 218

Query: 542 HGPIPNLTEFTGLLILSVYSNNMSGPLPL-IS--SNLVFLDLS--NNLFSGSISPFLCYR 596
               P +     L  L +         P      + L  L L   +NL +      L   
Sbjct: 219 SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT------LPLD 272

Query: 597 INETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTG---NLPYSMGSL 648
           I+    L  L L        LP           + +  +       + P +  + 
Sbjct: 273 IHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARPAE 327

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 58.4 bits (142), Expect = 3e-09
 Identities = 31/203 (15%), Positives = 56/203 (27%), Gaps = 63/203 (31%)

Query: 114 KINPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSN 173
             +     L +L  L L +   +   +P    ++ NL+ L +  + +   +   + +L  
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIR--SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPK 230

Query: 174 LQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANC 233
           L+ LDL     L                      N    F           L  L L +C
Sbjct: 231 LEELDLRGCTAL---------------------RNYPPIF------GGRAPLKRLILKDC 263

Query: 234 QLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFN 293
                        S+L  L                    P  +  LT L  L L      
Sbjct: 264 -------------SNLLTL--------------------PLDIHRLTQLEKLDLRGCVNL 290

Query: 294 SSIPNWLYRFIHLEYLSLSNNSL 316
           S +P+ + +      + +  +  
Sbjct: 291 SRLPSLIAQLPANCIILVPPHLQ 313

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  113 bits (284), Expect = 2e-27
 Identities = 59/244 (24%), Positives = 102/244 (41%), Gaps = 19/244 (7%)

Query: 124 HLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRI--GGMIPHHLGNLSNLQFLDLSS 181
             + L+L  N  Q +     F  +  L  L+LS   +   G         ++L++LDLS 
Sbjct: 29  SATRLELESNKLQSLP-HGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 182 NYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLL 241
           N ++ + +     GL  LEHLD +  NL +  ++ +  + L +L+ L +++         
Sbjct: 88  NGVITMSSN--FLGLEQLEHLDFQHSNLKQMSEFSVFLS-LRNLIYLDISHTHTRVAFNG 144

Query: 242 ATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLY 301
                SSL VL ++ N F + F+P             L +L  L L         P    
Sbjct: 145 IFNGLSSLEVLKMAGNSFQENFLPD--------IFTELRNLTFLDLSQCQLEQLSPTAFN 196

Query: 302 RFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNM--GIEGRIPRSMASLCNLKSL 359
               L+ L++S+N+   ++D+     L S+  LD SLN     + +  +   S  +L  L
Sbjct: 197 SLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS--SLAFL 253

Query: 360 NLRG 363
           NL  
Sbjct: 254 NLTQ 257

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  113 bits (284), Expect = 2e-27
 Identities = 53/229 (23%), Positives = 89/229 (38%), Gaps = 24/229 (10%)

Query: 118 SLLDLKHLSYLDLSFNDFQGIQIPRF-FGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQF 176
               L  L+ L LS N                +L+YL+LS   +   +  +   L  L+ 
Sbjct: 47  VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEH 105

Query: 177 LDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSK----AFDWLMVTNKLPSLVELRLAN 232
           LD   + L  +  F     L  L +LD+   +        F+       L SL  L++A 
Sbjct: 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN------GLSSLEVLKMAG 159

Query: 233 CQ-LHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNH 291
                +F         +LT LDLS  Q ++  +    F        +L+SL+ L +  N+
Sbjct: 160 NSFQENFLPDIFTELRNLTFLDLSQCQLEQ--LSPTAF-------NSLSSLQVLNMSHNN 210

Query: 292 FNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNL-TSISWLDLSLN 339
           F S           L+ L  S N +  T   + L +  +S+++L+L+ N
Sbjct: 211 FFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  102 bits (255), Expect = 1e-23
 Identities = 58/204 (28%), Positives = 89/204 (43%), Gaps = 15/204 (7%)

Query: 116 NPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPH-HLGNLSNL 174
           + S      L YLDLSFN      +   F  +  L +L+   + +  M       +L NL
Sbjct: 71  SQSDFGTTSLKYLDLSFNGVI--TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 128

Query: 175 QFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQ 234
            +LD+S  +     N    +GLS LE L +   +  + F   + T  L +L  L L+ CQ
Sbjct: 129 IYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNSFQENFLPDIFTE-LRNLTFLDLSQCQ 186

Query: 235 LHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNS 294
           L   S  A  + SSL VL++S N F    + ++ +       + L SL+ L    NH  +
Sbjct: 187 LEQLSPTAFNSLSSLQVLNMSHNNFFS--LDTFPY-------KCLNSLQVLDYSLNHIMT 237

Query: 295 SIPNWLYRFI-HLEYLSLSNNSLQ 317
           S    L  F   L +L+L+ N   
Sbjct: 238 SKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 93.9 bits (234), Expect = 5e-21
 Identities = 55/297 (18%), Positives = 92/297 (30%), Gaps = 65/297 (21%)

Query: 149 NLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVN 208
           +   L L   ++  +       L+ L  L LSSN L +          S           
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG----CCSQSDF--------- 75

Query: 209 LSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWV 268
                          SL  L L+   +   S         L  LD   +   +  +  + 
Sbjct: 76  ------------GTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQ--MSEFS 120

Query: 269 FGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNL 328
                    +L +L +L +   H   +          LE L ++ NS Q     +    L
Sbjct: 121 V------FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 174

Query: 329 TSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESL 388
            ++++LDLS    +E   P +  SL +L+ LN+                     N   SL
Sbjct: 175 RNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSH-------------------NNFFSL 214

Query: 389 DLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLST-LRVLRINDNKLN 444
           D      Y  L        ++  LD++ N I+    + L    + L  L +  N   
Sbjct: 215 D---TFPYKCLN-------SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 85.1 bits (211), Expect = 4e-18
 Identities = 61/302 (20%), Positives = 97/302 (32%), Gaps = 55/302 (18%)

Query: 248 SLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLE 307
           S T +  +                +P G+   +S   L L+SN   S       +   L 
Sbjct: 8   SGTEIRCNSKGLTS----------VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLT 55

Query: 308 YLSLSNNSLQ-GTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHL 366
            LSLS+N L      S++    TS+ +LDLS N  I   +  +   L  L+ L+ +  +L
Sbjct: 56  KLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI--TMSSNFLGLEQLEHLDFQHSNL 113

Query: 367 SQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPES 426
             ++SE   +F    +  L  LD+                         +          
Sbjct: 114 K-QMSE-FSVFLSLRN--LIYLDIS------------------------HTHTRVAFNGI 145

Query: 427 LGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPP------F 480
              LS+L VL++  N          F  L  L++  +   +L        + P       
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ------LSPTAFNSLS 199

Query: 481 QLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQ 540
            L  L + +    S           LQ L    + I            S L FL+L QN 
Sbjct: 200 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259

Query: 541 IH 542
             
Sbjct: 260 FA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 76.6 bits (189), Expect = 3e-15
 Identities = 49/267 (18%), Positives = 85/267 (31%), Gaps = 42/267 (15%)

Query: 406 FKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLN-GTLSAIHFANLTKLSWFRVD 464
             +   L+  +N +  L      +L+ L  L ++ N L+     +      T L +  + 
Sbjct: 27  PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86

Query: 465 GNKLTLGVKHDWIPP-FQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIR 523
            N +        +   F    LGL                  L+ L   +S++  +    
Sbjct: 87  FNGVIT------MSSNF----LGLEQ----------------LEHLDFQHSNLKQMSEFS 120

Query: 524 FLKSASQLKFLDLGQNQIHGPIPN--LTEFTGLLILSVYSNNMSGPLPLIS----SNLVF 577
              S   L +LD+          N      + L +L +  N+              NL F
Sbjct: 121 VFLSLRNLIYLDISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 179

Query: 578 LDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKF 637
           LDLS       +SP      N   SL  L ++ N         +    +L+ L  S N  
Sbjct: 180 LDLSQCQLE-QLSPTA---FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235

Query: 638 TGNLPYSM--GSLTSLVWLHLGENRLS 662
                        +SL +L+L +N  +
Sbjct: 236 M-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 72.4 bits (178), Expect = 8e-14
 Identities = 45/233 (19%), Positives = 71/233 (30%), Gaps = 27/233 (11%)

Query: 505 HLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNM 564
               L L ++ +  +         +QL  L L  N +           G           
Sbjct: 29  SATRLELESNKLQSLPH-GVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT---------- 77

Query: 565 SGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSY 624
                   ++L +LDLS N      S FL       + L  L    + L           
Sbjct: 78  --------TSLKYLDLSFNGVITMSSNFL-----GLEQLEHLDFQHSNLKQMSEFSVFLS 124

Query: 625 -QNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNIL-VSLKNCTALESLDVGE 682
            +NL  L +S+             L+SL  L +  N    N L         L  LD+ +
Sbjct: 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184

Query: 683 NEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLS 735
            +    +        S + VL +  N F          L  LQ+LD + N++ 
Sbjct: 185 CQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 65.8 bits (161), Expect = 1e-11
 Identities = 45/257 (17%), Positives = 82/257 (31%), Gaps = 54/257 (21%)

Query: 626 NLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVS--LKNCTALESLDVGEN 683
           +   L+L +NK           LT L  L L  N LS     S      T+L+ LD+  N
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 684 EFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGL-CDLAFLQILDIADNNLSGAIPNCI 742
             +     ++G    ++  L  + +         +   L  L  LDI+  +   A     
Sbjct: 89  GVITMSSNFLG--LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146

Query: 743 NNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRN 802
           N L+                                             +L  ++ ++ N
Sbjct: 147 NGLS---------------------------------------------SL-EVLKMAGN 160

Query: 803 NFSGKIPLEV-TNLKALQSLNFSYNSFTGRIPESIGV-MRSLESIDFSANQLSGEIPESM 860
           +F      ++ T L+ L  L+ S      ++  +    + SL+ ++ S N          
Sbjct: 161 SFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 219

Query: 861 SSLTFLNHLNLSNNNLT 877
             L  L  L+ S N++ 
Sbjct: 220 KCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 62.0 bits (151), Expect = 2e-10
 Identities = 58/315 (18%), Positives = 98/315 (31%), Gaps = 89/315 (28%)

Query: 571 ISSNLVFLDLSNNLFSGSISP--FLCYRINETKSLNALQLNDNYLN--GELPDCWMSYQN 626
           I S+   L+L +N    S+    F          L  L L+ N L+  G          +
Sbjct: 26  IPSSATRLELESNKLQ-SLPHGVFDKLT-----QLTKLSLSSNGLSFKGCCSQSDFGTTS 79

Query: 627 LKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSL-KNCTALESLDVGENEF 685
           LK L LS N     +  +   L  L  L    + L      S+  +   L  LD+     
Sbjct: 80  LKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-- 136

Query: 686 VGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAI-PNCINN 744
             +                  +  F+G        L+ L++L +A N+      P+    
Sbjct: 137 --HTRV-------------AFNGIFNG--------LSSLEVLKMAGNSFQENFLPDIFTE 173

Query: 745 LTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNF 804
           L                                              NL   +D+S+   
Sbjct: 174 LR---------------------------------------------NL-TFLDLSQCQL 187

Query: 805 SGKIPLEV-TNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESM--S 861
             ++      +L +LQ LN S+N+F          + SL+ +D+S N +     +     
Sbjct: 188 E-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQH 245

Query: 862 SLTFLNHLNLSNNNL 876
             + L  LNL+ N+ 
Sbjct: 246 FPSSLAFLNLTQNDF 260

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  115 bits (290), Expect = 6e-27
 Identities = 97/544 (17%), Positives = 175/544 (32%), Gaps = 94/544 (17%)

Query: 149 NLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVN 208
             + L+LS+  I  +    +  LS L+ L LS N +  +D                    
Sbjct: 53  RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLD-------------------- 92

Query: 209 LSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWV 268
               F           L  L +++ +L +   ++    +SL  LDLS N FD        
Sbjct: 93  -FHVFL------FNQDLEYLDVSHNRLQN---ISCCPMASLRHLDLSFNDFDV------- 135

Query: 269 FGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNL 328
             P+ +   NLT L  LGL +  F   +       +HL  + L   S            +
Sbjct: 136 -LPVCKEFGNLTKLTFLGLSAAKF-RQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQI 193

Query: 329 TSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESL 388
            + + L L  +      +  +M S+  L  L L  + L+ E  + L  F   ++ G   L
Sbjct: 194 PNTTVLHLVFHPNSLFSVQVNM-SVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLL 252

Query: 389 DLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLS 448
           ++                ++I T    +  +             +  L I +  +     
Sbjct: 253 NV--------------TLQHIETTWKCSVKLFQFF-----WPRPVEYLNIYNLTITE--- 290

Query: 449 AIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQF 508
                        R +       +K        L+   ++N                +  
Sbjct: 291 ----------RIDREEFTYSETALKS-------LMIEHVKNQVFLFSKEALYSVFAEMNI 333

Query: 509 LYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHG-PIPNLTEFTGLLILSVYSNNMSGP 567
             L  S       +    S S   FL+  QN          +    L  L +  N +   
Sbjct: 334 KMLSISDTP-FIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN- 391

Query: 568 LPLISS------NLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCW 621
              ++       +L  LD+S N  +       C      +S+  L L+ N L G +  C 
Sbjct: 392 FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC---AWAESILVLNLSSNMLTGSVFRCL 448

Query: 622 MSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVG 681
                +K L L NN+   ++P  +  L +L  L++  N+L           T+L+ + + 
Sbjct: 449 P--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLH 505

Query: 682 ENEF 685
           +N +
Sbjct: 506 DNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 91.1 bits (226), Expect = 4e-19
 Identities = 73/493 (14%), Positives = 149/493 (30%), Gaps = 59/493 (11%)

Query: 114 KINPSLLD-LKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLS 172
           ++    +  L  L  L LS N  + +     F    +L YL++S  R+   I      ++
Sbjct: 66  ELRMPDISFLSELRVLRLSHNRIRSLD-FHVFLFNQDLEYLDVSHNRLQN-IS--CCPMA 121

Query: 173 NLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSK----AFDWLMVTNKLPSLVEL 228
           +L+ LDLS N    +        L+ L  L L +    +        L ++  L  LV  
Sbjct: 122 SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSY 181

Query: 229 RLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLD 288
            +   +     +  T    ++  L    N              +   +  L  L+   + 
Sbjct: 182 HIKGGETESLQIPNT----TVLHLVFHPNSLFS--------VQVNMSVNALGHLQLSNIK 229

Query: 289 SNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPR 348
            N  N               ++  +   +G             +W               
Sbjct: 230 LNDEN-----------CQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLF-------- 270

Query: 349 SMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKN 408
                  ++ LN+  + +++ I      +S      L    +++             F  
Sbjct: 271 QFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAE 330

Query: 409 IVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKL 468
           +     + +    +        S+   L    N           + L +L    +  N L
Sbjct: 331 MNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVF-TDSVFQGCSTLKRLQTLILQRNGL 389

Query: 469 TLGVKHDWIPPFQLVALGLRNCYVGS----RFPLWLYSQKHLQFLYLVNSSISDIFPIRF 524
                   +    + +L   +  + S     +       + +  L L ++ ++      F
Sbjct: 390 K-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV---F 445

Query: 525 LKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNN-MSGPLPLISS--NLVFLDLS 581
                ++K LDL  N+I     ++T    L  L+V SN   S P  +     +L ++ L 
Sbjct: 446 RCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLH 505

Query: 582 NNLFSGSISPFLC 594
           +N       P+ C
Sbjct: 506 DN-------PWDC 511

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 90.3 bits (224), Expect = 9e-19
 Identities = 94/507 (18%), Positives = 164/507 (32%), Gaps = 92/507 (18%)

Query: 247 SSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRF-IH 305
                L LS N   +  +              L+ LR L L  N    S+   ++ F   
Sbjct: 52  PRTKALSLSQNSISE--LRMPDI-------SFLSELRVLRLSHNRI-RSLDFHVFLFNQD 101

Query: 306 LEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVH 365
           LEYL +S+N LQ  I    + +L     LDLS N               +   L +    
Sbjct: 102 LEYLDVSHNRLQ-NISCCPMASLRH---LDLSFN---------------DFDVLPVCKE- 141

Query: 366 LSQEISEILDIFSGCVSNGLESLDLRSDSI-YGHLTDQLGQFKNIVTLDFANNSIVGLIP 424
                      F       L  L L +       L        + + LD  +  I G   
Sbjct: 142 -----------FGNLTK--LTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGET 188

Query: 425 ESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVA 484
           ESL   +T   L +  +  N   S     ++  L   ++   KL                
Sbjct: 189 ESLQIPNTTV-LHLVFHP-NSLFSVQVNMSVNALGHLQLSNIKLND-------------- 232

Query: 485 LGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSA--SQLKFLDLGQNQIH 542
               NC     F   L     L  + L +   +    ++  +      +++L++    I 
Sbjct: 233 ---ENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTIT 289

Query: 543 GPIP-NLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETK 601
             I      ++   + S+   ++   + L S   ++   +                    
Sbjct: 290 ERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAE------------------- 330

Query: 602 SLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRL 661
            +N   L+ +        C  S  +   L  + N FT ++     +L  L  L L  N L
Sbjct: 331 -MNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL 389

Query: 662 S--GNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLC 719
                + +  KN ++LE+LDV  N    +           ++VL L SN   G +   L 
Sbjct: 390 KNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP 449

Query: 720 DLAFLQILDIADNNLSGAIPNCINNLT 746
               +++LD+ +N +  +IP  + +L 
Sbjct: 450 PK--VKVLDLHNNRIM-SIPKDVTHLQ 473

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 85.3 bits (211), Expect = 3e-17
 Identities = 72/483 (14%), Positives = 147/483 (30%), Gaps = 68/483 (14%)

Query: 411 TLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTL 470
            L  + NSI  L    +  LS LRVLR++ N++  +L    F     L +  V  N+L  
Sbjct: 56  ALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQN 114

Query: 471 GVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQ 530
                 I    +                       L+ L L  +    +   +   + ++
Sbjct: 115 ------ISCCPM---------------------ASLRHLDLSFNDFDVLPVCKEFGNLTK 147

Query: 531 LKFLDLGQNQI----HGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLS-NNLF 585
           L FL L   +       P+ +L     LL L  Y         L   N   L L  +   
Sbjct: 148 LTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNS 207

Query: 586 SGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSM 645
             S+   +         L+ ++LND      +       +    L ++          S+
Sbjct: 208 LFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSV 267

Query: 646 GSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVG---------ENEFVGNIPTWIGER 696
                     +    +    +    +       +           +N+        +   
Sbjct: 268 KLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSV 327

Query: 697 FSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTR 756
           F+ M + +L  +             +    L+   N  + ++    + L  + T     +
Sbjct: 328 FAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQT--LILQ 385

Query: 757 SVQ-QYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNF-SGKIPLEVTN 814
               +       +                      ++ +  +D+S N+  S         
Sbjct: 386 RNGLKNFFKVALM-------------------TKNMSSLETLDVSLNSLNSHAYDRTCAW 426

Query: 815 LKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNN 874
            +++  LN S N  TG +   +     ++ +D   N++   IP+ ++ L  L  LN+++N
Sbjct: 427 AESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASN 483

Query: 875 NLT 877
            L 
Sbjct: 484 QLK 486

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 69.9 bits (171), Expect = 2e-12
 Identities = 51/241 (21%), Positives = 83/241 (34%), Gaps = 29/241 (12%)

Query: 81  NITGHVLHLDLRNPFNYHKESEYEAIRRTALVGKINPSLLDLKHLSYLDLSFNDFQGIQI 140
            IT  +   +        K    E ++    +            ++   LS +D   I +
Sbjct: 287 TITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHM 346

Query: 141 PRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDN-FWWLSGLSFL 199
                S  +  +LN ++      +      L  LQ L L  N L            +S L
Sbjct: 347 V-CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSL 405

Query: 200 EHLDLRSVNL-SKAFDWLMVTNKLPSLVELRLANCQLHH--FSLLATANFSSLTVLDLSD 256
           E LD+   +L S A+D         S++ L L++  L    F  L       + VLDL +
Sbjct: 406 ETLDVSLNSLNSHAYDRT--CAWAESILVLNLSSNMLTGSVFRCLP----PKVKVLDLHN 459

Query: 257 NQFDKWFIPSWVFG---------------PIPRG-LQNLTSLRHLGLDSNHFNSSIPNWL 300
           N+     IP  V                  +P G    LTSL+++ L  N ++ + P   
Sbjct: 460 NRIMS--IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIR 517

Query: 301 Y 301
           Y
Sbjct: 518 Y 518

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  108 bits (271), Expect = 4e-26
 Identities = 53/219 (24%), Positives = 77/219 (35%), Gaps = 21/219 (9%)

Query: 125 LSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYL 184
              + L  N    +     F +  NL  L L    +  +       L+ L+ LDLS N  
Sbjct: 34  SQRIFLHGNRISHVP-AASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 185 LYVDNFWWLSGLSFLEHLDLRSVNLSK----AFDWLMVTNKLPSLVELRLANCQLHHFSL 240
           L   +     GL  L  L L    L +     F        L +L  L L +  L     
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR------GLAALQYLYLQDNALQALPD 146

Query: 241 LATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWL 300
               +  +LT L L  N+     +P   F       + L SL  L L  N      P+  
Sbjct: 147 DTFRDLGNLTHLFLHGNRI--SSVPERAF-------RGLHSLDRLLLHQNRVAHVHPHAF 197

Query: 301 YRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLN 339
                L  L L  N+L   + +EAL  L ++ +L L+ N
Sbjct: 198 RDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  103 bits (258), Expect = 2e-24
 Identities = 53/220 (24%), Positives = 75/220 (34%), Gaps = 23/220 (10%)

Query: 149 NLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVN 208
             + + L   RI  +         NL  L L SN L  +D     +GL+ LE LDL    
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA-AFTGLALLEQLDLSDNA 91

Query: 209 L-----SKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWF 263
                    F        L  L  L L  C L           ++L  L L DN      
Sbjct: 92  QLRSVDPATFH------GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-- 143

Query: 264 IPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSE 323
           +P   F       ++L +L HL L  N  +S           L+ L L  N +   +   
Sbjct: 144 LPDDTF-------RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPH 195

Query: 324 ALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRG 363
           A  +L  +  L L  N  +      ++A L  L+ L L  
Sbjct: 196 AFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 82.0 bits (203), Expect = 4e-17
 Identities = 46/222 (20%), Positives = 79/222 (35%), Gaps = 18/222 (8%)

Query: 246 FSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIH 305
            ++   + L  N+     +P+  F       +   +L  L L SN               
Sbjct: 31  PAASQRIFLHGNRISH--VPAASF-------RACRNLTILWLHSNVLARIDAAAFTGLAL 81

Query: 306 LEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSM-ASLCNLKSLNLRGV 364
           LE L LS+N+   ++D      L  +  L L    G++  +   +   L  L+ L L+  
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC-GLQ-ELGPGLFRGLAALQYLYLQDN 139

Query: 365 HLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIP 424
            L Q + +  D F    +  L  L L  + I            ++  L    N +  + P
Sbjct: 140 AL-QALPD--DTFRDLGN--LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 194

Query: 425 ESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGN 466
            +   L  L  L +  N L+  L     A L  L + R++ N
Sbjct: 195 HAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 79.3 bits (196), Expect = 3e-16
 Identities = 37/144 (25%), Positives = 51/144 (35%), Gaps = 12/144 (8%)

Query: 121 DLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLS 180
            L  L  L L     Q +  P  F  +  L+YL L    +  +      +L NL  L L 
Sbjct: 103 GLGRLHTLHLDRCGLQELG-PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLH 161

Query: 181 SNYLLYVDNFWWLSGLSFLEHLDLRSVNLS----KAFDWLMVTNKLPSLVELRLANCQLH 236
            N +  V       GL  L+ L L    ++     AF        L  L+ L L    L 
Sbjct: 162 GNRISSVPER-AFRGLHSLDRLLLHQNRVAHVHPHAFR------DLGRLMTLYLFANNLS 214

Query: 237 HFSLLATANFSSLTVLDLSDNQFD 260
                A A   +L  L L+DN + 
Sbjct: 215 ALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 71.9 bits (177), Expect = 1e-13
 Identities = 46/255 (18%), Positives = 84/255 (32%), Gaps = 49/255 (19%)

Query: 381 VSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRIND 440
           +    + + L  + I           +N+  L   +N +  +   +   L+ L  L ++D
Sbjct: 30  IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 441 NKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWL 500
           N    ++    F  L +L    +D   L        + P     L               
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQE------LGPGLFRGL--------------- 128

Query: 501 YSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVY 560
                LQ+LYL ++++  + P    +    L  L L  N+I   +P    F GL      
Sbjct: 129 ---AALQYLYLQDNALQAL-PDDTFRDLGNLTHLFLHGNRISS-VPERA-FRGL------ 176

Query: 561 SNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDC 620
                        +L  L L  N  +  + P       +   L  L L  N L+    + 
Sbjct: 177 ------------HSLDRLLLHQNRVA-HVHPHA---FRDLGRLMTLYLFANNLSALPTEA 220

Query: 621 WMSYQNLKTLKLSNN 635
               + L+ L+L++N
Sbjct: 221 LAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 60.4 bits (147), Expect = 6e-10
 Identities = 42/209 (20%), Positives = 68/209 (32%), Gaps = 28/209 (13%)

Query: 529 SQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGS 588
           +  + + L  N+I         F                      NL  L L +N+ +  
Sbjct: 32  AASQRIFLHGNRISHVPAAS--FRAC------------------RNLTILWLHSNVLA-R 70

Query: 589 ISPFLCYRINETKSLNALQLNDNYLNGELP-DCWMSYQNLKTLKLSNNKFTGNLPYSM-G 646
           I       +     L  L L+DN     +    +     L TL L        L   +  
Sbjct: 71  IDAAAFTGL---ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFR 126

Query: 647 SLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILR 706
            L +L +L+L +N L      + ++   L  L +  N    ++P         +  L+L 
Sbjct: 127 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLH 185

Query: 707 SNKFHGPLPTGLCDLAFLQILDIADNNLS 735
            N+     P    DL  L  L +  NNLS
Sbjct: 186 QNRVAHVHPHAFRDLGRLMTLYLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 59.6 bits (145), Expect = 1e-09
 Identities = 44/265 (16%), Positives = 86/265 (32%), Gaps = 59/265 (22%)

Query: 423 IPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQL 482
           +P  +   +  + + ++ N+++  + A  F     L+   +  N L        I     
Sbjct: 26  VPVGI--PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLA------RIDAAAF 76

Query: 483 VALGLRNCYVGSRFPLWLYSQKHLQFLYLV-NSSISDIFPIRFLKSASQLKFLDLGQNQI 541
             L                    L+ L L  N+ +  +          +L  L L +  +
Sbjct: 77  TGL------------------ALLEQLDLSDNAQLRSV-DPATFHGLGRLHTLHLDRCGL 117

Query: 542 HGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETK 601
              +     F GL                  + L +L L +N    ++         +  
Sbjct: 118 QE-LGPGL-FRGL------------------AALQYLYLQDNALQ-ALPDDT---FRDLG 153

Query: 602 SLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRL 661
           +L  L L+ N ++      +    +L  L L  N+     P++   L  L+ L+L  N L
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213

Query: 662 S---GNILVSLKNCTALESLDVGEN 683
           S      L  L+    L+ L + +N
Sbjct: 214 SALPTEALAPLRA---LQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 48/253 (18%), Positives = 79/253 (31%), Gaps = 50/253 (19%)

Query: 626 NLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEF 685
             + + L  N+ +     S  +  +L  L L  N L+     +      LE LD+ +N  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 686 VGNIPTWIGERFSRMVVLILRSNKFHGPLPTG-LCDLAFLQILDIADNNLSGAIPNCINN 744
           + ++         R+  L L        L  G    LA LQ L + DN L     +   +
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQE-LGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 745 LTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNF 804
           L                                              NL   + +  N  
Sbjct: 152 LG---------------------------------------------NL-THLFLHGNRI 165

Query: 805 SGKIPLEV-TNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSL 863
           S  +P      L +L  L    N      P +   +  L ++   AN LS    E+++ L
Sbjct: 166 S-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPL 224

Query: 864 TFLNHLNLSNNNL 876
             L +L L++N  
Sbjct: 225 RALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 26/147 (17%), Positives = 49/147 (33%), Gaps = 4/147 (2%)

Query: 602 SLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRL 661
           +   + L+ N ++      + + +NL  L L +N        +   L  L  L L +N  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 662 SGNILVS-LKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTG-LC 719
             ++  +       L +L +        +   +    + +  L L+ N     LP     
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQA-LPDDTFR 150

Query: 720 DLAFLQILDIADNNLSGAIPNCINNLT 746
           DL  L  L +  N +S         L 
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLH 177

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  109 bits (275), Expect = 2e-25
 Identities = 88/410 (21%), Positives = 131/410 (31%), Gaps = 74/410 (18%)

Query: 149 NLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVN 208
           ++ Y++LS   I  +       L +LQFL +       V       GLS L  L L    
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 209 LS----KAFDWLMVTNKLPSLVELRLANCQLHHFSLLATA--NFSSLTVLDLSDNQFDKW 262
                  AF+       L +L  L L  C L    L        +SL +L L DN   K 
Sbjct: 91  FLQLETGAFN------GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI-KK 143

Query: 263 FIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRF--IHLEYLSLSNNSLQ--- 317
             P+  F        N+     L L  N   S     L  F   H   L LS+ +LQ   
Sbjct: 144 IQPASFF-------LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMN 196

Query: 318 ----GTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEI 373
               G          TSI+ LDLS N G +  + +          +    +  S      
Sbjct: 197 EYWLGWEKCGNPFKNTSITTLDLSGN-GFKESMAKRFFDAIAGTKIQSLILSNSY----- 250

Query: 374 LDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTL 433
            ++ S       +  D        + T +  +   + T D + + I  L+       + L
Sbjct: 251 -NMGSSFGHTNFKDPD--------NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDL 301

Query: 434 RVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPP--FQLVALGLRNCY 491
             L +  N++N  +    F  LT L    +  N L        I    F+     L    
Sbjct: 302 EQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLG------SIDSRMFE----NLDK-- 348

Query: 492 VGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQI 541
                         L+ L L  + I  +   +       LK L L  NQ+
Sbjct: 349 --------------LEVLDLSYNHIRAL-GDQSFLGLPNLKELALDTNQL 383

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 99.8 bits (249), Expect = 4e-22
 Identities = 67/374 (17%), Positives = 126/374 (33%), Gaps = 51/374 (13%)

Query: 114 KINPSLLD-LKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLS 172
           ++N +    L+ L +L +       +     F  + +L  L L   +   +       L+
Sbjct: 44  ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLA 103

Query: 173 NLQFLDLSSNYL--LYVDNFWWLSGLSFLEHLDL-----RSVNLSKAFDWLMVTNKLPSL 225
           NL+ L L+   L    +    +   L+ LE L L     + +  +  F        +   
Sbjct: 104 NLEVLTLTQCNLDGAVLSGN-FFKPLTSLEMLVLRDNNIKKIQPASFFL------NMRRF 156

Query: 226 VELRLANCQLHHF--SLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRG-LQNLTSL 282
             L L   ++       L        T+L LS        +  +  G    G     TS+
Sbjct: 157 HVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQ--DMNEYWLGWEKCGNPFKNTSI 214

Query: 283 RHLGLDSNHFNSSIPNWLYRFI---HLEYLSLSNNSLQGT-IDSEALGNLTSISWLDLSL 338
             L L  N F  S+    +  I    ++ L LSN+   G+        +  + ++  L  
Sbjct: 215 TTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEA 274

Query: 339 NMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRS---DSI 395
           +                +K+ +L    +   + +   +FS      LE L L     + I
Sbjct: 275 S---------------GVKTCDLSKSKI-FALLK--SVFSHFTD--LEQLTLAQNEINKI 314

Query: 396 YGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANL 455
             +    L    +++ L+ + N +  +       L  L VL ++ N +   L    F  L
Sbjct: 315 DDNAFWGL---THLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI-RALGDQSFLGL 370

Query: 456 TKLSWFRVDGNKLT 469
             L    +D N+L 
Sbjct: 371 PNLKELALDTNQLK 384

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 98.3 bits (245), Expect = 1e-21
 Identities = 76/440 (17%), Positives = 146/440 (33%), Gaps = 67/440 (15%)

Query: 223 PSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSL 282
             +  + L+   +   +  + +    L  L +         I +  F       + L+SL
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTP-GLVIRNNTF-------RGLSSL 81

Query: 283 RHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGT-IDSEALGNLTSISWLDLSLNMG 341
             L LD N F            +LE L+L+  +L G  +       LTS+  L L  N  
Sbjct: 82  IILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-N 140

Query: 342 IEGRIPRSM-ASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLT 400
           I+   P S   ++     L+L    +        +            L L S ++     
Sbjct: 141 IKKIQPASFFLNMRRFHVLDLTFNKVKSICE---EDLLNFQGKHFTLLRLSSITL----- 192

Query: 401 DQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSW 460
                       D     +      +  + +++  L ++ N    +++   F +    + 
Sbjct: 193 -----------QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKR-FFDAIAGTK 240

Query: 461 FRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIF 520
            +      +L + + +           ++    +   L       ++   L  S I  + 
Sbjct: 241 IQ------SLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASG---VKTCDLSKSKIFAL- 290

Query: 521 PIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDL 580
                   + L+ L L QN+I+  I +   F GL                  ++L+ L+L
Sbjct: 291 LKSVFSHFTDLEQLTLAQNEIN-KIDDNA-FWGL------------------THLLKLNL 330

Query: 581 SNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGN 640
           S N    SI   +   +     L  L L+ N++       ++   NLK L L  N+   +
Sbjct: 331 SQNFLG-SIDSRMFENL---DKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-S 385

Query: 641 LPYSM-GSLTSLVWLHLGEN 659
           +P  +   LTSL  + L  N
Sbjct: 386 VPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 96.0 bits (239), Expect = 7e-21
 Identities = 75/364 (20%), Positives = 133/364 (36%), Gaps = 46/364 (12%)

Query: 408 NIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNK 467
           ++  +D + NSI  L   S  +L  L+ L++        +    F  L+ L   ++D N+
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 468 LTLGVKHDWIPP------FQLVALGLRNCYVGSRF--PLWLYSQKHLQFLYLVNSSISDI 519
                    +          L  L L  C +        +      L+ L L +++I  I
Sbjct: 91  FLQ------LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI 144

Query: 520 FPIRFLKSASQLKFLDLGQNQI----HGPIPNLTEFTGLLILSVYSNNMSG--------- 566
            P  F  +  +   LDL  N++       + N        +L + S  +           
Sbjct: 145 QPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQG-KHFTLLRLSSITLQDMNEYWLGWE 203

Query: 567 --PLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNG--------- 615
               P  ++++  LDLS N F  S++      I  TK + +L L+++Y  G         
Sbjct: 204 KCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTK-IQSLILSNSYNMGSSFGHTNFK 262

Query: 616 ELPDCW---MSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNC 672
           +  +     +    +KT  LS +K    L       T L  L L +N ++     +    
Sbjct: 263 DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGL 322

Query: 673 TALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCD-LAFLQILDIAD 731
           T L  L++ +N   G+I + + E   ++ VL L  N     L       L  L+ L +  
Sbjct: 323 THLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKELALDT 380

Query: 732 NNLS 735
           N L 
Sbjct: 381 NQLK 384

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 91.0 bits (226), Expect = 3e-19
 Identities = 67/435 (15%), Positives = 129/435 (29%), Gaps = 59/435 (13%)

Query: 280 TSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLN 339
             + ++ L  N           R   L++L +   +    I +     L+S+  L L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 340 MGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHL 399
                    +   L NL+ L L                       L+   L  +      
Sbjct: 90  Q-FLQLETGAFNGLANLEVLTLT-------------------QCNLDGAVLSGNF----- 124

Query: 400 TDQLGQFKNIVTLDFANNSIVGLIPESL-GQLSTLRVLRINDNKLNGTLSAIHFANLTK- 457
                   ++  L   +N+I  + P S    +    VL +  NK+  ++      N    
Sbjct: 125 ---FKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGK 180

Query: 458 -LSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSI 516
             +  R+    L                  +   ++G       +    +  L L  +  
Sbjct: 181 HFTLLRLSSITL----------------QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGF 224

Query: 517 SDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLV 576
            +    RF  + +  K   L  +  +    +              N     L   +S + 
Sbjct: 225 KESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH----TNFKDPDNFTFKGLE--ASGVK 278

Query: 577 FLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNK 636
             DLS +    ++   +    +    L  L L  N +N    + +    +L  L LS N 
Sbjct: 279 TCDLSKSKIF-ALLKSVF---SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF 334

Query: 637 FTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGER 696
                     +L  L  L L  N +      S      L+ L +  N+   ++P  I +R
Sbjct: 335 LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDR 393

Query: 697 FSRMVVLILRSNKFH 711
            + +  + L +N + 
Sbjct: 394 LTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 83.6 bits (207), Expect = 6e-17
 Identities = 51/269 (18%), Positives = 89/269 (33%), Gaps = 38/269 (14%)

Query: 75  AGVFCDNITGHVLHLDLRNPFNYHKESEYEAIRRTALVGKINPSLLDLKHLSYLDLSFND 134
                +    H   L L +          + +    L  +   +      ++ LDLS N 
Sbjct: 171 EEDLLNFQGKHFTLLRLSS-------ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG 223

Query: 135 FQGIQIPRFFGSMGNLR----YLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNF 190
           F+     RFF ++   +     L+ S          +  +  N  F  L ++ +   D  
Sbjct: 224 FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCD-- 281

Query: 191 WWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLT 250
                   L    + ++     F           L +L LA  +++     A    + L 
Sbjct: 282 --------LSKSKIFALL-KSVFSH------FTDLEQLTLAQNEINKIDDNAFWGLTHLL 326

Query: 251 VLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLS 310
            L+LS N      I S +F       +NL  L  L L  NH  +          +L+ L+
Sbjct: 327 KLNLSQNFLGS--IDSRMF-------ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELA 377

Query: 311 LSNNSLQGTIDSEALGNLTSISWLDLSLN 339
           L  N L+ ++       LTS+  + L  N
Sbjct: 378 LDTNQLK-SVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 80.2 bits (198), Expect = 9e-16
 Identities = 63/384 (16%), Positives = 119/384 (30%), Gaps = 65/384 (16%)

Query: 505 HLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNM 564
           H+ ++ L  +SI+++    F      L+FL + Q      I N T F GL          
Sbjct: 31  HVNYVDLSLNSIAELNETSF-SRLQDLQFLKVEQQTPGLVIRNNT-FRGL---------- 78

Query: 565 SGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGEL--PDCWM 622
                   S+L+ L L  N F   +       +    +L  L L    L+G +   + + 
Sbjct: 79  --------SSLIILKLDYNQFL-QLETGAFNGLA---NLEVLTLTQCNLDGAVLSGNFFK 126

Query: 623 SYQNLKTLKLSNNKFTGNLPYSM-GSLTSLVWLHLGENRLS---GNILVSLKNCTALESL 678
              +L+ L L +N      P S   ++     L L  N++       L++ +       L
Sbjct: 127 PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQG-KHFTLL 185

Query: 679 DVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAI 738
            +                        +                  +  LD++ N    ++
Sbjct: 186 RLSSITL-----------------QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESM 228

Query: 739 PNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMID 798
                +        S   S    +                    E        + V+  D
Sbjct: 229 AKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEA-------SGVKTCD 281

Query: 799 ISRNNFSGKIPLEV-TNLKALQSLNFSYNSFTGRIPESIGV---MRSLESIDFSANQLSG 854
           +S++     +   V ++   L+ L  + N    +I +       +  L  ++ S N L  
Sbjct: 282 LSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDD--NAFWGLTHLLKLNLSQNFLG- 336

Query: 855 EIPESM-SSLTFLNHLNLSNNNLT 877
            I   M  +L  L  L+LS N++ 
Sbjct: 337 SIDSRMFENLDKLEVLDLSYNHIR 360

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 76.7 bits (189), Expect = 1e-14
 Identities = 55/257 (21%), Positives = 93/257 (36%), Gaps = 31/257 (12%)

Query: 53  RDLKDPSNRLASWSGNGDCCAWAGVFCDNITGHVLHLDLRNPFNYHKESEYEAIRRTALV 112
             L+  S  L   +         G    N +   L L   N F   KES  +        
Sbjct: 183 TLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLS-GNGF---KESMAKRFFDAIAG 238

Query: 113 GKINPSLLDLKHLSYLDLSFNDFQGIQIPRFFG-SMGNLRYLNLSRTRIGGMIPHHLGNL 171
            KI   +L   +         +F+      F G     ++  +LS+++I  ++     + 
Sbjct: 239 TKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHF 298

Query: 172 SNLQFLDLSSNYL--LYVDNFWWLSGLSFLEHLDLRSVNL----SKAFDWLMVTNKLPSL 225
           ++L+ L L+ N +  +  + FW   GL+ L  L+L    L    S+ F+       L  L
Sbjct: 299 TDLEQLTLAQNEINKIDDNAFW---GLTHLLKLNLSQNFLGSIDSRMFE------NLDKL 349

Query: 226 VELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRG-LQNLTSLRH 284
             L L+   +      +     +L  L L  NQ             +P G    LTSL+ 
Sbjct: 350 EVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS----------VPDGIFDRLTSLQK 399

Query: 285 LGLDSNHFNSSIPNWLY 301
           + L +N ++ S P   Y
Sbjct: 400 IWLHTNPWDCSCPRIDY 416

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  106 bits (267), Expect = 2e-24
 Identities = 76/474 (16%), Positives = 151/474 (31%), Gaps = 95/474 (20%)

Query: 118 SLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFL 177
           S   L  L+ LD   +    +        +  L  L  +   I   +   L   +NL +L
Sbjct: 37  SEEQLATLTSLDCHNSSITDMT---GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYL 90

Query: 178 DLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHH 237
              SN L  +D    ++ L+ L +L+  +  L+K     +  ++ P L  L  A   L  
Sbjct: 91  ACDSNKLTNLD----VTPLTKLTYLNCDTNKLTK-----LDVSQNPLLTYLNCARNTLTE 141

Query: 238 FSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIP 297
             +   ++ + LT LD   N+                 +   T L  L    N   + + 
Sbjct: 142 IDV---SHNTQLTELDCHLNKKITKL-----------DVTPQTQLTTLDCSFNKI-TELD 186

Query: 298 NWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLK 357
             + +   L  L+   N++   +D   L     +++LD S N   E  I   +  L  L 
Sbjct: 187 --VSQNKLLNRLNCDTNNIT-KLD---LNQNIQLTFLDCSSNKLTE--ID--VTPLTQLT 236

Query: 358 SLNLRGVHLSQEISEILDIFSG--CVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFA 415
             +     L++     L   +   C+   L  +D             L     ++     
Sbjct: 237 YFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEID-------------LTHNTQLIYFQAE 283

Query: 416 NNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHD 475
                 +    +   + L +L          ++ +  +   KL +  ++  +LT      
Sbjct: 284 GCRK--IKELDVTHNTQLYLLDCQAAG----ITELDLSQNPKLVYLYLNNTELT------ 331

Query: 476 WIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLD 535
                    L + +                L+ L  VN+ I D   +  + +   L    
Sbjct: 332 --------ELDVSHN-------------TKLKSLSCVNAHIQDFSSVGKIPA---LNNNF 367

Query: 536 LGQNQIHGPIPNLTEFTGLLILSVYSNNMSG---PLPLISSNLVFLDLSNNLFS 586
             + Q    +P  T     L ++V  + +     P+ +   +    D + N  +
Sbjct: 368 EAEGQTIT-MPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTIT 420

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 99.8 bits (249), Expect = 4e-22
 Identities = 82/472 (17%), Positives = 159/472 (33%), Gaps = 85/472 (18%)

Query: 223 PSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSL 282
            +      A  ++     ++    ++LT LD  ++              +  G++ LT L
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD----------MT-GIEKLTGL 66

Query: 283 RHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGI 342
             L   SN+  +++   L +  +L YL+  +N L   +D   +  LT +++L+   N   
Sbjct: 67  TKLICTSNNI-TTLD--LSQNTNLTYLACDSNKLT-NLD---VTPLTKLTYLNCDTNKLT 119

Query: 343 EGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQ 402
           +      ++    L  LN     L++     +D+ S      L  LD   +     L   
Sbjct: 120 KL----DVSQNPLLTYLNCARNTLTE-----IDV-SHNTQ--LTELDCHLNKKITKLD-- 165

Query: 403 LGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFR 462
           +     + TLD + N I  L    + Q   L  L  + N +    + +      +L++  
Sbjct: 166 VTPQTQLTTLDCSFNKITEL---DVSQNKLLNRLNCDTNNI----TKLDLNQNIQLTFLD 218

Query: 463 VDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPI 522
              NKLT               + +                  L +     + ++++  +
Sbjct: 219 CSSNKLT--------------EIDVTPL-------------TQLTYFDCSVNPLTEL-DV 250

Query: 523 RFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLIS-SNLVFLDLS 581
             L   S+L  L   Q  +   I  LT  T L+            L +   + L  LD  
Sbjct: 251 STL---SKLTTLHCIQTDLLE-ID-LTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQ 305

Query: 582 NNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNL 641
               +  +       +++   L  L LN+  L  EL     +   LK+L   N     + 
Sbjct: 306 AAGIT-ELD------LSQNPKLVYLYLNNTELT-ELDVSHNT--KLKSLSCVNAHIQ-DF 354

Query: 642 PYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWI 693
             S+G + +L      E +       +L N +   ++     +  GN     
Sbjct: 355 S-SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIE 405

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 97.8 bits (244), Expect = 2e-21
 Identities = 92/526 (17%), Positives = 168/526 (31%), Gaps = 122/526 (23%)

Query: 170 NLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELR 229
           N ++             +        L+ L  LD  + +++     +    KL  L +L 
Sbjct: 19  NFASEVAAAFEMQATDTIS----EEQLATLTSLDCHNSSITD----MTGIEKLTGLTKLI 70

Query: 230 LANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDS 289
             +  +    L   +  ++LT L    N+             +   +  LT L +L  D+
Sbjct: 71  CTSNNITTLDL---SQNTNLTYLACDSNKLTN----------LD--VTPLTKLTYLNCDT 115

Query: 290 NHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRS 349
           N       +       L YL+ + N+L   ID   + + T ++ LD  LN  I       
Sbjct: 116 NKLTKLDVSQN---PLLTYLNCARNTLT-EID---VSHNTQLTELDCHLNKKIT---KLD 165

Query: 350 MASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNI 409
           +     L +L+                      N +  LD+              Q K +
Sbjct: 166 VTPQTQLTTLDCSF-------------------NKITELDV-------------SQNKLL 193

Query: 410 VTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLT 469
             L+   N+I  L    L Q   L  L  + NKL    + I    LT+L++F    N LT
Sbjct: 194 NRLNCDTNNITKL---DLNQNIQLTFLDCSSNKL----TEIDVTPLTQLTYFDCSVNPLT 246

Query: 470 LGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSAS 529
                  +    L                       L  L+ + + + +I     L   +
Sbjct: 247 E------LDVSTL---------------------SKLTTLHCIQTDLLEID----LTHNT 275

Query: 530 QLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLIS-SNLVFLDLSNNLFSGS 588
           QL +      +      ++T  T L +L   +  ++  L L     LV+L L+N   +  
Sbjct: 276 QLIYFQAEGCRKI-KELDVTHNTQLYLLDCQAAGIT-ELDLSQNPKLVYLYLNNTELT-E 332

Query: 589 ISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSL 648
           +       ++    L +L   + ++  +          L     +  +    +P    + 
Sbjct: 333 LD------VSHNTKLKSLSCVNAHIQ-DFSSV-GKIPALNNNFEAEGQTI-TMPKETLTN 383

Query: 649 TSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIG 694
            SL         +S ++L    N   +E  D G  +   N  TW  
Sbjct: 384 NSLTIA------VSPDLLDQFGNPMNIEPGDGGVYDQATNTITWEN 423

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 83.6 bits (207), Expect = 7e-17
 Identities = 72/449 (16%), Positives = 137/449 (30%), Gaps = 48/449 (10%)

Query: 475 DWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFL 534
           DW P     +       + +   +       L  L   NSSI+D+  I  L     L  L
Sbjct: 13  DWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTG---LTKL 69

Query: 535 DLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLC 594
               N I     +L++ T L  L+  SN ++       + L +L+   N  +  +     
Sbjct: 70  ICTSNNITT--LDLSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLT-KLD---- 122

Query: 595 YRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWL 654
             +++   L  L    N L  E+         L  L    NK    L   +   T L  L
Sbjct: 123 --VSQNPLLTYLNCARNTLT-EIDVS--HNTQLTELDCHLNKKITKLD--VTPQTQLTTL 175

Query: 655 HLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPL 714
               N+++    + +     L  L+   N    NI      +  ++  L   SNK    +
Sbjct: 176 DCSFNKITE---LDVSQNKLLNRLNCDTN----NITKLDLNQNIQLTFLDCSSNKLTE-I 227

Query: 715 PTGLCDLAFLQILDIADNNLSGAIPNCINNLTG-MVTACSFTRSVQQYLPLPIDVGVILV 773
              +  L  L   D + N L+    + ++ LT                    ID+     
Sbjct: 228 D--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLE---------IDLTHNTQ 276

Query: 774 EKASVVSKGEMVDYEDILNLV--RMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGR 831
                      +   D+ +     ++D      +    L+++    L  L  +    T  
Sbjct: 277 LIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELT-E 332

Query: 832 IPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSSTQLQSFDV 891
           +   +     L+S+      +  +    +  +  LN+   +          +    S  +
Sbjct: 333 LD--VSHNTKLKSLSCVNAHIQ-DFSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTI 388

Query: 892 SSFAGN-DLCGAPLPKNCTENVSISEDEN 919
           +      D  G P+     +     +  N
Sbjct: 389 AVSPDLLDQFGNPMNIEPGDGGVYDQATN 417

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 80.9 bits (200), Expect = 4e-16
 Identities = 72/354 (20%), Positives = 120/354 (33%), Gaps = 44/354 (12%)

Query: 383 NGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNK 442
             L SLD  + SI       + +   +  L   +N+I  L    L Q + L  L  + NK
Sbjct: 42  ATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNK 96

Query: 443 LNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYS 502
           L    + +    LTKL++   D NKLT   K D      L  L      +     + +  
Sbjct: 97  L----TNLDVTPLTKLTYLNCDTNKLT---KLDVSQNPLLTYLNCARNTLTE---IDVSH 146

Query: 503 QKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSN 562
              L  L    +       +        L  LD   N+I     ++++   L  L+  +N
Sbjct: 147 NTQLTELDCHLNKKITKLDVTPQTQ---LTTLDCSFNKITEL--DVSQNKLLNRLNCDTN 201

Query: 563 NMSGPLPLIS-SNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCW 621
           N++  L L     L FLD S+N  +  I       +     L     + N L  EL    
Sbjct: 202 NITK-LDLNQNIQLTFLDCSSNKLT-EID------VTPLTQLTYFDCSVNPLT-ELDVST 252

Query: 622 MSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVG 681
           +S   L TL          +  +    T L++             + + + T L  LD  
Sbjct: 253 LS--KLTTLHCIQTDLL-EIDLT--HNTQLIYFQA--EGCRKIKELDVTHNTQLYLLDCQ 305

Query: 682 ENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLS 735
                  I      +  ++V L L + +    L   +     L+ L   + ++ 
Sbjct: 306 AA----GITELDLSQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQ 352

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 74.3 bits (183), Expect = 6e-14
 Identities = 52/274 (18%), Positives = 87/274 (31%), Gaps = 40/274 (14%)

Query: 117 PSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQF 176
             +     L+ LD SFN    + +         L  LN     I   +   L     L F
Sbjct: 164 LDVTPQTQLTTLDCSFNKITELDV----SQNKLLNRLNCDTNNI-TKLD--LNQNIQLTF 216

Query: 177 LDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLH 236
           LD SSN L  +D    ++ L+ L + D     L++     +  + L  L  L      L 
Sbjct: 217 LDCSSNKLTEID----VTPLTQLTYFDCSVNPLTE-----LDVSTLSKLTTLHCIQTDLL 267

Query: 237 HFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSI 296
              L    + + L        +  K              + + T L  L   +    + +
Sbjct: 268 EIDLT---HNTQLIYFQAEGCRKIK-----------ELDVTHNTQLYLLDCQAAGI-TEL 312

Query: 297 PNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNL 356
              L +   L YL L+N  L   +D   + + T +  L       I+     S+  +  L
Sbjct: 313 D--LSQNPKLVYLYLNNTELT-ELD---VSHNTKLKSLSCVNAH-IQD-FS-SVGKIPAL 363

Query: 357 KSLNLRGVHLSQEISEILDIFSGCVSNGLESLDL 390
            +             E L   S  ++   + LD 
Sbjct: 364 NNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQ 397

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  102 bits (256), Expect = 1e-23
 Identities = 58/315 (18%), Positives = 118/315 (37%), Gaps = 39/315 (12%)

Query: 124 HLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNY 183
           HL  +  S    +   +P+      +   L+L    I  +       L +L  L L +N 
Sbjct: 34  HLRVVQCSDLGLK--AVPKEISP--DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK 89

Query: 184 LLYVDN--FWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLL 241
           +  +    F   S L  L+ L +   +L +     +  N   SLVELR+ + ++      
Sbjct: 90  ISKIHEKAF---SPLRKLQKLYISKNHLVE-----IPPNLPSSLVELRIHDNRIRKVPKG 141

Query: 242 ATANFSSLTVLDLSDNQFDKWFIPSWVFGP---------------IPRGLQNLTSLRHLG 286
             +   ++  +++  N  +        F                 IP+ L    +L  L 
Sbjct: 142 VFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL--PETLNELH 199

Query: 287 LDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRI 346
           LD N   +     L R+  L  L L +N ++  I++ +L  L ++  L L  N  +  R+
Sbjct: 200 LDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNK-LS-RV 256

Query: 347 PRSMASLCNLKSLNLRGVHLSQ-EISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQ 405
           P  +  L  L+ + L   ++++  +++   +  G        + L ++ +  +   Q   
Sbjct: 257 PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV-PYWEVQPAT 315

Query: 406 F---KNIVTLDFANN 417
           F    + + + F N 
Sbjct: 316 FRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  102 bits (255), Expect = 2e-23
 Identities = 46/252 (18%), Positives = 83/252 (32%), Gaps = 29/252 (11%)

Query: 118 SLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFL 177
           +   L+ L  L +S N    I          +L  L +   RI  +       L N+  +
Sbjct: 97  AFSPLRKLQKLYISKNHLVEIPPNLP----SSLVELRIHDNRIRKVPKGVFSGLRNMNCI 152

Query: 178 DLSSNYLLYVD-NFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLH 236
           ++  N L           GL  L +L +    L+      +  +   +L EL L + ++ 
Sbjct: 153 EMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTG-----IPKDLPETLNELHLDHNKIQ 206

Query: 237 HFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSI 296
              L     +S L  L L  NQ     I +            L +LR L LD+N   S +
Sbjct: 207 AIELEDLLRYSKLYRLGLGHNQIRM--IENGSL-------SFLPTLRELHLDNNKL-SRV 256

Query: 297 PNWLYRFIHLEYLSLSNNSLQGTIDSEA------LGNLTSISWLDLSLNMGIEGRIPRSM 350
           P  L     L+ + L  N++   +                 + + L  N      +  + 
Sbjct: 257 PAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPAT 315

Query: 351 -ASLCNLKSLNL 361
              + +  ++  
Sbjct: 316 FRCVTDRLAIQF 327

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 95.1 bits (237), Expect = 3e-21
 Identities = 53/314 (16%), Positives = 96/314 (30%), Gaps = 45/314 (14%)

Query: 406 FKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDG 465
             +   LD  NN I  L  +    L  L  L + +NK++  +    F+ L KL    +  
Sbjct: 53  SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISK 111

Query: 466 NKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFL 525
           N L        IPP                          L  L + ++ I  +    F 
Sbjct: 112 NHLVE------IPPNLP---------------------SSLVELRIHDNRIRKVPKGVF- 143

Query: 526 KSASQLKFLDLGQNQI-HGPIPNLTEFTG--LLILSVYSNNMSGPLPLISSNLVFLDLSN 582
                +  +++G N + +        F G  L  L +    ++G    +   L  L L +
Sbjct: 144 SGLRNMNCIEMGGNPLENSGFEPGA-FDGLKLNYLRISEAKLTGIPKDLPETLNELHLDH 202

Query: 583 NLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLP 642
           N    +I       +     L  L L  N +             L+ L L NNK +  +P
Sbjct: 203 NKIQ-AIELED---LLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVP 257

Query: 643 YSMGSLTSLVWLHLGENRLSG------NILVSLKNCTALESLDVGENEF-VGNIPTWIGE 695
             +  L  L  ++L  N ++         +           + +  N      +      
Sbjct: 258 AGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFR 317

Query: 696 RFSRMVVLILRSNK 709
             +  + +   + K
Sbjct: 318 CVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 76.6 bits (189), Expect = 4e-15
 Identities = 28/143 (19%), Positives = 50/143 (34%), Gaps = 9/143 (6%)

Query: 122 LKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSS 181
            + L+ L L  N  Q I+          L  L L   +I  +    L  L  L+ L L +
Sbjct: 192 PETLNELHLDHNKIQAIE-LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN 250

Query: 182 NYLLYVDNFWWLSGLSFLEHLDLRSVNLSK----AFDWLMVTNKLPSLVELRLANCQLHH 237
           N L  V     L  L  L+ + L + N++K     F  +    K      + L N  + +
Sbjct: 251 NKLSRVPA--GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY 308

Query: 238 FSLLATA--NFSSLTVLDLSDNQ 258
           + +        +    +   + +
Sbjct: 309 WEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 76.2 bits (188), Expect = 6e-15
 Identities = 35/182 (19%), Positives = 56/182 (30%), Gaps = 21/182 (11%)

Query: 115 INPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNL 174
             P   D   L+YL +S     GI           L  L+L   +I  +    L   S L
Sbjct: 164 FEPGAFDGLKLNYLRISEAKLTGIP----KDLPETLNELHLDHNKIQAIELEDLLRYSKL 219

Query: 175 QFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQ 234
             L L  N +  ++N    S L  L  L L +  LS+    L     L  L  + L    
Sbjct: 220 YRLGLGHNQIRMIENGSL-SFLPTLRELHLDNNKLSRVPAGL---PDLKLLQVVYLHTNN 275

Query: 235 LHHFS------LLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLD 288
           +          +      +    + L +N    W +    F       + +T    +   
Sbjct: 276 ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATF-------RCVTDRLAIQFG 328

Query: 289 SN 290
           + 
Sbjct: 329 NY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 75.8 bits (187), Expect = 7e-15
 Identities = 58/236 (24%), Positives = 97/236 (41%), Gaps = 16/236 (6%)

Query: 504 KHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTG---LLILSVY 560
                L L N+ IS++    F K    L  L L  N+I   I     F+    L  L + 
Sbjct: 54  PDTTLLDLQNNDISELRKDDF-KGLQHLYALVLVNNKISK-IHEKA-FSPLRKLQKLYIS 110

Query: 561 SNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYL-NGELPD 619
            N++    P + S+LV L + +N     +   +    +  +++N +++  N L N     
Sbjct: 111 KNHLVEIPPNLPSSLVELRIHDNRIR-KVPKGV---FSGLRNMNCIEMGGNPLENSGFEP 166

Query: 620 CWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLD 679
                  L  L++S  K T  +P       +L  LHL  N++    L  L   + L  L 
Sbjct: 167 GAFDGLKLNYLRISEAKLT-GIP--KDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLG 223

Query: 680 VGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLS 735
           +G N+ +  I          +  L L +NK    +P GL DL  LQ++ +  NN++
Sbjct: 224 LGHNQ-IRMIENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 69.3 bits (170), Expect = 1e-12
 Identities = 51/320 (15%), Positives = 101/320 (31%), Gaps = 77/320 (24%)

Query: 571 ISSNLVFLDLSNNLFSGSISP--FLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLK 628
           IS +   LDL NN  S  +    F   +      L AL L +N ++      +   + L+
Sbjct: 52  ISPDTTLLDLQNNDIS-ELRKDDFKGLQ-----HLYALVLVNNKISKIHEKAFSPLRKLQ 105

Query: 629 TLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGN 688
            L +S N     +P      +SLV L + +NR+             +  +++G N     
Sbjct: 106 KLYISKNHLV-EIP--PNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE-- 160

Query: 689 IPTWIGER-FS--RMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNL 745
             +      F   ++  L +   K  G +P  L     L  L +  N +           
Sbjct: 161 -NSGFEPGAFDGLKLNYLRISEAKLTG-IPKDL--PETLNELHLDHNKIQ---------- 206

Query: 746 TGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFS 805
              +      R                                   + +  + +  N   
Sbjct: 207 --AIELEDLLR----------------------------------YSKLYRLGLGHNQIR 230

Query: 806 GKIPLEV-TNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESM---- 860
             I     + L  L+ L+   N  + R+P  +  ++ L+ +    N ++ ++  +     
Sbjct: 231 -MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPV 287

Query: 861 ---SSLTFLNHLNLSNNNLT 877
                  + N ++L NN + 
Sbjct: 288 GFGVKRAYYNGISLFNNPVP 307

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 66.2 bits (162), Expect = 1e-11
 Identities = 60/381 (15%), Positives = 111/381 (29%), Gaps = 95/381 (24%)

Query: 505 HLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNM 564
           HL+ +   +  +  + P            LDL  N I   +    +F GL          
Sbjct: 34  HLRVVQCSDLGLKAV-PKEISPD---TTLLDLQNNDISE-LRK-DDFKGL---------- 77

Query: 565 SGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSY 624
                    +L  L L NN  S  I        +  + L  L ++ N+L  E+P      
Sbjct: 78  --------QHLYALVLVNNKIS-KIHEKA---FSPLRKLQKLYISKNHLV-EIPP--NLP 122

Query: 625 QNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNIL--VSLKNCTALESLDVGE 682
            +L  L++ +N+           L ++  + +G N L  +     +      L  L + E
Sbjct: 123 SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISE 181

Query: 683 NEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCI 742
            +    IP    +    +  L L  NK        L   + L  L +  N +       +
Sbjct: 182 AKLT-GIPK---DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSL 237

Query: 743 NNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRN 802
           + L  +                                              R + +  N
Sbjct: 238 SFLPTL----------------------------------------------RELHLDNN 251

Query: 803 NFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESI-------GVMRSLESIDFSANQLS-G 854
             S ++P  + +LK LQ +    N+ T ++  +                I    N +   
Sbjct: 252 KLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYW 309

Query: 855 EIPESM-SSLTFLNHLNLSNN 874
           E+  +    +T    +   N 
Sbjct: 310 EVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 50/273 (18%), Positives = 84/273 (30%), Gaps = 59/273 (21%)

Query: 626 NLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEF 685
           +   L L NN  +         L  L  L L  N++S     +      L+ L + +N  
Sbjct: 55  DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL 114

Query: 686 VGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNL 745
           V  IP       S +V L +  N+           L  +  +++  N L           
Sbjct: 115 V-EIPP---NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE---------- 160

Query: 746 TGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFS 805
                                + G                   D L L   + IS    +
Sbjct: 161 -----------------NSGFEPGAF-----------------DGLKL-NYLRISEAKLT 185

Query: 806 GKIPLEVTNLKALQSLNFSYNSFTGRIPE-SIGVMRSLESIDFSANQLSGEIPESMSSLT 864
             IP ++   + L  L+  +N     I    +     L  +    NQ+      S+S L 
Sbjct: 186 -GIPKDL--PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP 241

Query: 865 FLNHLNLSNNNLTGKIPSS----TQLQSFDVSS 893
            L  L+L NN L+ ++P+       LQ   + +
Sbjct: 242 TLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHT 273

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  105 bits (264), Expect = 1e-23
 Identities = 59/348 (16%), Positives = 100/348 (28%), Gaps = 89/348 (25%)

Query: 122 LKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSS 181
             H++ L +  N+     +P        LR L +S  ++   +P     L  L       
Sbjct: 60  PAHITTLVIPDNNLT--SLP---ALPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPL 113

Query: 182 NYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLL 241
            +L                                        L +L +   QL      
Sbjct: 114 THL----------------------------------PALPSGLCKLWIFGNQLTSLP-- 137

Query: 242 ATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLY 301
                  L  L +SDNQ             +P     L  L      +N   +S+P    
Sbjct: 138 --VLPPGLQELSVSDNQLAS----------LPALPSELCKLW---AYNNQL-TSLPMLP- 180

Query: 302 RFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNL 361
               L+ LS+S+N L           L  +   +  L       +P   A    LK L +
Sbjct: 181 --SGLQELSVSDNQL--ASLPTLPSELYKLWAYNNRLT-----SLP---ALPSGLKELIV 228

Query: 362 RGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVG 421
            G  L+               + L+ L +  + +   L         +++L    N +  
Sbjct: 229 SGNRLTSLPVLP---------SELKELMVSGNRL-TSLPMLPS---GLLSLSVYRNQLTR 275

Query: 422 LIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLT 469
           L PESL  LS+   + +  N     LS      L +++        + 
Sbjct: 276 L-PESLIHLSSETTVNLEGNP----LSERTLQALREITSAPGYSGPII 318

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  102 bits (256), Expect = 1e-22
 Identities = 73/319 (22%), Positives = 126/319 (39%), Gaps = 48/319 (15%)

Query: 371 SEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQL 430
           + ++     C++NG   L++    +   L D L    +I TL   +N++  L P    +L
Sbjct: 28  AAVVQKMRACLNNGNAVLNVGESGL-TTLPDCLP--AHITTLVIPDNNLTSL-PALPPEL 83

Query: 431 STLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLT--------LGVKHDWIP---- 478
              R L ++ N+L  +L       L +LS F      L         L +  + +     
Sbjct: 84  ---RTLEVSGNQLT-SLPV-LPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPV 138

Query: 479 -PFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLG 537
            P  L  L + +  + S  P        L  L+  N+ ++ +         S L+ L + 
Sbjct: 139 LPPGLQELSVSDNQLAS-LPALP---SELCKLWAYNNQLTSL-----PMLPSGLQELSVS 189

Query: 538 QNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRI 597
            NQ+   +P     + L  L  Y+N ++  LP + S L  L +S N  + S+        
Sbjct: 190 DNQLAS-LPT--LPSELYKLWAYNNRLT-SLPALPSGLKELIVSGNRLT-SLPVLPS--- 241

Query: 598 NETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLG 657
                L  L ++ N L   LP        L +L +  N+ T  LP S+  L+S   ++L 
Sbjct: 242 ----ELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 292

Query: 658 ENRLSGNILVSLKNCTALE 676
            N LS   L +L+  T+  
Sbjct: 293 GNPLSERTLQALREITSAP 311

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 95.7 bits (238), Expect = 2e-20
 Identities = 68/360 (18%), Positives = 125/360 (34%), Gaps = 69/360 (19%)

Query: 529 SQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGS 588
           +    L++G++ +   +P+      +  L +  NN++  LP +   L  L++S N  + S
Sbjct: 40  NGNAVLNVGESGLTT-LPD-CLPAHITTLVIPDNNLTS-LPALPPELRTLEVSGNQLT-S 95

Query: 589 ISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSL 648
           +             L+       +L   LP        L  L +  N+ T +LP     L
Sbjct: 96  LPV----LPPGLLELSIFSNPLTHLP-ALPS------GLCKLWIFGNQLT-SLPVLPPGL 143

Query: 649 TSLVWLHLGENRLSGNILVSLKNC-TALESLDVGENEFVGNIPTWIGERFSRMVVLILRS 707
             L         +S N L SL    + L  L    N+      T +    S +  L +  
Sbjct: 144 QEL--------SVSDNQLASLPALPSELCKLWAYNNQL-----TSLPMLPSGLQELSVSD 190

Query: 708 NKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPID 767
           N+    LPT   +L     L   +N L+ ++P   + L           S  +   LP  
Sbjct: 191 NQLAS-LPTLPSEL---YKLWAYNNRLT-SLPALPSGLK------ELIVSGNRLTSLP-- 237

Query: 768 VGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNS 827
                                    L + + +S N  +  +P+  + L    SL+   N 
Sbjct: 238 --------------------VLPSEL-KELMVSGNRLT-SLPMLPSGL---LSLSVYRNQ 272

Query: 828 FTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSSTQLQ 887
            T R+PES+  + S  +++   N LS    +++  +T     +           S+ +  
Sbjct: 273 LT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRET 331

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 94.2 bits (234), Expect = 5e-20
 Identities = 69/428 (16%), Positives = 124/428 (28%), Gaps = 76/428 (17%)

Query: 171 LSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRL 230
            +    L++  + L  + +       + +  L +   NL+       +    P L  L +
Sbjct: 39  NNGNAVLNVGESGLTTLPD----CLPAHITTLVIPDNNLTS------LPALPPELRTLEV 88

Query: 231 ANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNL----------- 279
           +  QL    +L       L++                    +P GL  L           
Sbjct: 89  SGNQLTSLPVLPP-GLLELSIFSNPLTHLP----------ALPSGLCKLWIFGNQLTSLP 137

Query: 280 ---TSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDL 336
                L+ L +  N   +S+P        L  L   NN L  T        L     L +
Sbjct: 138 VLPPGLQELSVSDNQL-ASLPALPS---ELCKLWAYNNQL--TSLPMLPSGLQE---LSV 188

Query: 337 SLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIY 396
           S N  +   +P   + L  L + N R   L    S            GL+ L +  + + 
Sbjct: 189 SDNQ-LA-SLPTLPSELYKLWAYNNRLTSLPALPS------------GLKELIVSGNRL- 233

Query: 397 GHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLT 456
             L     + K    L  + N +  L P        L  L +  N+L   L      +L+
Sbjct: 234 TSLPVLPSELKE---LMVSGNRLTSL-PMLPSG---LLSLSVYRNQLT-RLPE-SLIHLS 284

Query: 457 KLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSI 516
             +   ++GN L+            L  +     Y G      +      +    ++ + 
Sbjct: 285 SETTVNLEGNPLSE------RTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAA 338

Query: 517 SDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLV 576
           +D          +      +   + +      + F   L  +      +G    ISS L 
Sbjct: 339 ADWLVPAREGEPAPADRWHMFGQEDN--ADAFSLFLDRLSETENFIKDAGFKAQISSWLA 396

Query: 577 FLDLSNNL 584
            L     L
Sbjct: 397 QLAEDEAL 404

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 91.9 bits (228), Expect = 3e-19
 Identities = 72/438 (16%), Positives = 126/438 (28%), Gaps = 114/438 (26%)

Query: 247 SSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHL 306
           +   VL++ ++              +P  L     +  L +  N+   S+P        L
Sbjct: 40  NGNAVLNVGESGLTT----------LPDCL--PAHITTLVIPDNNLT-SLPALPP---EL 83

Query: 307 EYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHL 366
             L +S N L  T        L  +S     L       +P   A    L  L + G   
Sbjct: 84  RTLEVSGNQL--TSLPVLPPGLLELSIFSNPLT-----HLP---ALPSGLCKLWIFG--- 130

Query: 367 SQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPES 426
                           N L SL                    +  L  ++N +  L P  
Sbjct: 131 ----------------NQLTSLP--------------VLPPGLQELSVSDNQLASL-PAL 159

Query: 427 LGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALG 486
             +L  L      +N+L  +L     + L +LS   V  N+L        +P        
Sbjct: 160 PSELCKLWAY---NNQLT-SLPM-LPSGLQELS---VSDNQLA------SLPT----LPS 201

Query: 487 LRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIP 546
                              L  L+  N+ ++ +         S LK L +  N++   +P
Sbjct: 202 ------------------ELYKLWAYNNRLTSL-----PALPSGLKELIVSGNRLTS-LP 237

Query: 547 NLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNAL 606
                + L  L V  N ++  LP++ S L+ L +  N  +      L   +    S   +
Sbjct: 238 V--LPSELKELMVSGNRLTS-LPMLPSGLLSLSVYRNQLT-----RLPESLIHLSSETTV 289

Query: 607 QLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLG-ENRLSGNI 665
            L  N L+ E      + + + +    +            +      LHL   + L    
Sbjct: 290 NLEGNPLS-ERT--LQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAR 346

Query: 666 LVSLKNCTALESLDVGEN 683
                           +N
Sbjct: 347 EGEPAPADRWHMFGQEDN 364

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 90.7 bits (225), Expect = 6e-19
 Identities = 61/351 (17%), Positives = 106/351 (30%), Gaps = 61/351 (17%)

Query: 114 KINPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSN 173
            +      L  LS           +           L  L +   ++   +P        
Sbjct: 95  SLPVLPPGLLELSIFSNPLTHLPAL--------PSGLCKLWIFGNQLTS-LPVLPP---G 142

Query: 174 LQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANC 233
           LQ L +S N L  +         S L  L   +  L+       +      L EL +++ 
Sbjct: 143 LQELSVSDNQLASLPA-----LPSELCKLWAYNNQLTS------LPMLPSGLQELSVSDN 191

Query: 234 QLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFN 293
           QL           S L  L   +N+     +P+             + L+ L +  N   
Sbjct: 192 QLASLP----TLPSELYKLWAYNNRLTS--LPA-----------LPSGLKELIVSGNRL- 233

Query: 294 SSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASL 353
           +S+P        L+ L +S N L  T        L     L +  N  +  R+P S+  L
Sbjct: 234 TSLPVLP---SELKELMVSGNRL--TSLPMLPSGLL---SLSVYRNQ-LT-RLPESLIHL 283

Query: 354 CNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLD 413
            +  ++NL G  LS+   +            + S    S  I           +    L 
Sbjct: 284 SSETTVNLEGNPLSERTLQA--------LREITSAPGYSGPIIRFDMAGASAPRETRALH 335

Query: 414 FANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVD 464
            A      L+P   G+ +      +   + N    ++    L++   F  D
Sbjct: 336 LAAADW--LVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLSETENFIKD 384

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 85.3 bits (211), Expect = 4e-17
 Identities = 54/321 (16%), Positives = 93/321 (28%), Gaps = 110/321 (34%)

Query: 573 SNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKL 632
           +    L++  +  + ++   L         +  L + DN L   LP        L+TL++
Sbjct: 40  NGNAVLNVGESGLT-TLPDCLP------AHITTLVIPDNNLT-SLPA---LPPELRTLEV 88

Query: 633 SNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTW 692
           S N+ T +LP     L  L         L           + L  L +  N+   ++P  
Sbjct: 89  SGNQLT-SLPVLPPGLLELSIFSNPLTHLPALP-------SGLCKLWIFGNQL-TSLPVL 139

Query: 693 IGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTAC 752
                                          LQ L ++DN L+ ++P   + L       
Sbjct: 140 PPG----------------------------LQELSVSDNQLA-SLPALPSELC------ 164

Query: 753 SFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEV 812
                                                   L        N  +  +P+  
Sbjct: 165 ---------------------------------------KL----WAYNNQLT-SLPMLP 180

Query: 813 TNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLS 872
           + L   Q L+ S N     +P        L  +    N+L+  +P   S L     L +S
Sbjct: 181 SGL---QELSVSDNQLA-SLPTLPS---ELYKLWAYNNRLT-SLPALPSGLK---ELIVS 229

Query: 873 NNNLTGKIPSSTQLQSFDVSS 893
            N LT      ++L+   VS 
Sbjct: 230 GNRLTSLPVLPSELKELMVSG 250

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 58.0 bits (140), Expect = 1e-08
 Identities = 41/241 (17%), Positives = 72/241 (29%), Gaps = 74/241 (30%)

Query: 656 LGENRLSGNILVSLKNC--TALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGP 713
             E+R    ++  ++ C       L+VGE+     +P  +    + +  L++  N     
Sbjct: 21  AEESRGRAAVVQKMRACLNNGNAVLNVGESGL-TTLPDCLP---AHITTLVIPDNNLTS- 75

Query: 714 LPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILV 773
           LP    +L   + L+++ N L+ ++P     L  +                         
Sbjct: 76  LPALPPEL---RTLEVSGNQLT-SLPVLPPGLLEL------------------------- 106

Query: 774 EKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIP 833
                                 +      +              L  L    N  T  +P
Sbjct: 107 ---------------------SIFSNPLTHLP-------ALPSGLCKLWIFGNQLT-SLP 137

Query: 834 ESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSS-TQLQSFDVS 892
                   L+ +  S NQL+  +P   S L     L   NN LT  +P   + LQ   VS
Sbjct: 138 VLPP---GLQELSVSDNQLA-SLPALPSELC---KLWAYNNQLT-SLPMLPSGLQELSVS 189

Query: 893 S 893
            
Sbjct: 190 D 190

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 99.4 bits (248), Expect = 2e-22
 Identities = 56/256 (21%), Positives = 93/256 (36%), Gaps = 40/256 (15%)

Query: 114 KINPSLLD-LKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLS 172
            I+ S L    +L  L L+ N    I+    F S+G+L +L+LS   +  +       LS
Sbjct: 66  YISNSDLQRCVNLQALVLTSNGINTIE-EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLS 124

Query: 173 NLQFLDLSSNYL-----------------LYVDNFWWLS--------GLSFLEHLDLRSV 207
           +L FL+L  N                   L V N    +        GL+FLE L++ + 
Sbjct: 125 SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184

Query: 208 NLSK----AFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWF 263
           +L      +         + ++  L L   Q      +     SS+  L+L D   D  F
Sbjct: 185 DLQSYEPKSLK------SIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLD-TF 237

Query: 264 IPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSE 323
             S +       L    + R++ +        +   L +   L  L  S N L+ ++   
Sbjct: 238 HFSELSTGETNSLIKKFTFRNVKITDESL-FQVMKLLNQISGLLELEFSRNQLK-SVPDG 295

Query: 324 ALGNLTSISWLDLSLN 339
               LTS+  + L  N
Sbjct: 296 IFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 96.3 bits (240), Expect = 1e-21
 Identities = 62/322 (19%), Positives = 112/322 (34%), Gaps = 61/322 (18%)

Query: 149 NLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVN 208
            ++ L+LS  RI  +    L    NLQ L L+SN +  ++                    
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE-------------------- 92

Query: 209 LSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWV 268
              +F        L SL  L L+   L + S       SSLT L+L  N +      + +
Sbjct: 93  -EDSFS------SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSL 144

Query: 269 FGPIPRGLQNLTSLRHLGLDSNHFNSSIP-NWLYRFIHLEYLSLSNNSLQGTIDSEALGN 327
           F        +LT L+ L + +    + I          LE L +  + LQ + + ++L +
Sbjct: 145 F-------SHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ-SYEPKSLKS 196

Query: 328 LTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLES 387
           + ++S L L +       +   +    +++ L LR   L                     
Sbjct: 197 IQNVSHLILHMK-QHILLLEIFVDVTSSVECLELRDTDLD-------------------- 235

Query: 388 LDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTL 447
                  +    T+ L +      +   + S+   + + L Q+S L  L  + N+L  ++
Sbjct: 236 -TFHFSELSTGETNSLIKKFTFRNVKITDESLFQ-VMKLLNQISGLLELEFSRNQLK-SV 292

Query: 448 SAIHFANLTKLSWFRVDGNKLT 469
               F  LT L    +  N   
Sbjct: 293 PDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 83.2 bits (206), Expect = 4e-17
 Identities = 58/338 (17%), Positives = 112/338 (33%), Gaps = 77/338 (22%)

Query: 246 FSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIH 305
             ++  LDLS+N+     I +          Q   +L+ L L SN  N+   +       
Sbjct: 51  TEAVKSLDLSNNRITY--ISNSDL-------QRCVNLQALVLTSNGINTIEEDSFSSLGS 101

Query: 306 LEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVH 365
           LE+L LS N L   + S     L+S+++L+L  N           + L  L+ L +  + 
Sbjct: 102 LEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD 160

Query: 366 LSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPE 425
              +I      F+G     LE L++                          + +    P+
Sbjct: 161 TFTKIQR--KDFAGLTF--LEELEI------------------------DASDLQSYEPK 192

Query: 426 SLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVAL 485
           SL  +  +  L ++  +    L  I     + +    +    L      D     +L   
Sbjct: 193 SLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDL------DTFHFSELSTG 245

Query: 486 GLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPI 545
              +          L  +   + + + + S+  +  ++ L   S L  L+  +NQ+   +
Sbjct: 246 ETNS----------LIKKFTFRNVKITDESLFQV--MKLLNQISGLLELEFSRNQLKS-V 292

Query: 546 PNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNN 583
           P+   F  L                  ++L  + L  N
Sbjct: 293 PDGI-FDRL------------------TSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 78.6 bits (194), Expect = 1e-15
 Identities = 46/256 (17%), Positives = 85/256 (33%), Gaps = 26/256 (10%)

Query: 223 PSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSL 282
            ++  L L+N ++ + S        +L  L L+ N  +   I    F        +L SL
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN--TIEEDSF-------SSLGSL 102

Query: 283 RHLGLDSNHFNSSIPN-WLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMG 341
            HL L  N+  S++ + W      L +L+L  N  +   ++    +LT +  L +     
Sbjct: 103 EHLDLSYNYL-SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDT 161

Query: 342 IEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRS---DSIYGH 398
                 +  A L  L+ L +    L Q             +  +  L L       +   
Sbjct: 162 FTKIQRKDFAGLTFLEELEIDASDL-QSYEP--KSLKSIQN--VSHLILHMKQHILLLEI 216

Query: 399 LTDQLGQ-----FKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFA 453
             D          ++     F  + +      SL +  T R ++I D  L   +      
Sbjct: 217 FVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKL--LN 274

Query: 454 NLTKLSWFRVDGNKLT 469
            ++ L       N+L 
Sbjct: 275 QISGLLELEFSRNQLK 290

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 73.2 bits (180), Expect = 7e-14
 Identities = 50/315 (15%), Positives = 96/315 (30%), Gaps = 64/315 (20%)

Query: 431 STLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPP--FQLVALGLR 488
             ++ L +++N++   +S         L    +  N +        I    F      L 
Sbjct: 52  EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINT------IEEDSFS----SLG 100

Query: 489 NCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNL 548
           +                L+ L L  + +S++    + K  S L FL+L  N     +   
Sbjct: 101 S----------------LEHLDLSYNYLSNL-SSSWFKPLSSLTFLNLLGNPYKT-LGET 142

Query: 549 TEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQL 608
           + F+ L  L +           I     F  L+                     L  L++
Sbjct: 143 SLFSHLTKLQILRVGNMDTFTKIQRK-DFAGLTF--------------------LEELEI 181

Query: 609 NDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVS 668
           + + L    P    S QN+  L L   +    L   +   +S+  L L +  L       
Sbjct: 182 DASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSE 241

Query: 669 L--------KNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCD 720
           L               ++ + +      +      + S ++ L    N+    +P G+ D
Sbjct: 242 LSTGETNSLIKKFTFRNVKITDESLFQVMKLL--NQISGLLELEFSRNQLKS-VPDGIFD 298

Query: 721 -LAFLQILDIADNNL 734
            L  LQ + +  N  
Sbjct: 299 RLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 72.1 bits (177), Expect = 2e-13
 Identities = 28/147 (19%), Positives = 56/147 (38%), Gaps = 11/147 (7%)

Query: 121 DLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLS 180
            L  L  L++  +D Q  + P+   S+ N+ +L L   +   ++   +   S+++ L+L 
Sbjct: 172 GLTFLEELEIDASDLQSYE-PKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELR 230

Query: 181 SNYL-------LYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANC 233
              L       L       L       ++ +        F  + + N++  L+EL  +  
Sbjct: 231 DTDLDTFHFSELSTGETNSLIKKFTFRNVKI---TDESLFQVMKLLNQISGLLELEFSRN 287

Query: 234 QLHHFSLLATANFSSLTVLDLSDNQFD 260
           QL           +SL  + L  N +D
Sbjct: 288 QLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 71.7 bits (176), Expect = 2e-13
 Identities = 41/192 (21%), Positives = 73/192 (38%), Gaps = 25/192 (13%)

Query: 121 DLKHLSYLDLSFND-FQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDL 179
            L  L  L +   D F  IQ  + F  +  L  L +  + +    P  L ++ N+  L L
Sbjct: 147 HLTKLQILRVGNMDTFTKIQ-RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 205

Query: 180 SSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSK---------AFDWLMVTNKLPSLVELRL 230
                + +    ++   S +E L+LR  +L             + L+   K  +   +++
Sbjct: 206 HMKQHILLLE-IFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLI---KKFTFRNVKI 261

Query: 231 ANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSN 290
            +  L    +      S L  L+ S NQ     +P  +F         LTSL+ + L +N
Sbjct: 262 TDESLFQV-MKLLNQISGLLELEFSRNQLK--SVPDGIF-------DRLTSLQKIWLHTN 311

Query: 291 HFNSSIPNWLYR 302
            ++ S P   Y 
Sbjct: 312 PWDCSCPRIDYL 323

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 68.2 bits (167), Expect = 3e-12
 Identities = 59/309 (19%), Positives = 107/309 (34%), Gaps = 46/309 (14%)

Query: 571 ISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTL 630
           ++  +  LDLSNN  +  IS     R     +L AL L  N +N    D + S  +L+ L
Sbjct: 50  LTEAVKSLDLSNNRIT-YISNSDLQRC---VNLQALVLTSNGINTIEEDSFSSLGSLEHL 105

Query: 631 KLSNNKFTGNLPYSM-GSLTSLVWLHLGENRLSGNILVSL-KNCTALESLDVGENEFVGN 688
            LS N  + NL  S    L+SL +L+L  N        SL  + T L+ L VG  +    
Sbjct: 106 DLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTK 164

Query: 689 IPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGM 748
           I        + +  L + ++      P  L  +  +  L +        +   ++  + +
Sbjct: 165 IQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSV 224

Query: 749 VTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKI 808
                      + L L                       +  L+     ++S    +   
Sbjct: 225 -----------ECLEL----------------------RDTDLDTFHFSELSTGETNS-- 249

Query: 809 PLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNH 868
              +      +++  +  S   ++ + +  +  L  ++FS NQL          LT L  
Sbjct: 250 ---LIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQK 305

Query: 869 LNLSNNNLT 877
           + L  N   
Sbjct: 306 IWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 63.6 bits (155), Expect = 1e-10
 Identities = 46/284 (16%), Positives = 99/284 (34%), Gaps = 41/284 (14%)

Query: 602 SLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRL 661
           ++ +L L++N +            NL+ L L++N        S  SL SL  L L  N L
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112

Query: 662 SGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTG-LCD 720
           S       K  ++L  L++  N +     T +    +++ +L + +      +       
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG 172

Query: 721 LAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVS 780
           L FL+ L+I  ++L    P  + ++  +            +L                  
Sbjct: 173 LTFLEELEIDASDLQSYEPKSLKSIQNV-----------SHL------------------ 203

Query: 781 KGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMR 840
                    IL++ + I +          +E   L+      F ++  +     S+    
Sbjct: 204 ---------ILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKF 254

Query: 841 SLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSST 884
           +  ++  +   L  ++ + ++ ++ L  L  S N L   +P   
Sbjct: 255 TFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDGI 296

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 44/285 (15%), Positives = 89/285 (31%), Gaps = 68/285 (23%)

Query: 626 NLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLS---GNILVSLKNCTALESLDVGE 682
            +K+L LSNN+ T      +    +L  L L  N ++    +   SL +   LE LD+  
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS---LEHLDLSY 109

Query: 683 NEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGL-CDLAFLQILDIADNNLSGAIPNC 741
           N  + N+ +   +  S +  L L  N +     T L   L  LQIL + + +    I   
Sbjct: 110 NY-LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR- 167

Query: 742 INNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISR 801
             +  G+                                            L   ++I  
Sbjct: 168 -KDFAGLT------------------------------------------FL-EELEIDA 183

Query: 802 NNFSGKIPLEV-TNLKALQSLNFSYNSFTGRIPESI-GVMRSLESIDFSANQLSGEIPES 859
           ++       +   +++ +  L          + E    V  S+E ++     L       
Sbjct: 184 SDLQ-SYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSE 241

Query: 860 MSSLTF--------LNHLNLSNNNLTGKIPSS---TQLQSFDVSS 893
           +S+             ++ +++ +L   +      + L   + S 
Sbjct: 242 LSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSR 286

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 95.6 bits (237), Expect = 2e-20
 Identities = 45/243 (18%), Positives = 76/243 (31%), Gaps = 31/243 (12%)

Query: 119 LLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLD 178
                     +L                + ++  +  + + I  +    +  L N+  L 
Sbjct: 17  DDAFAETIKDNLKKKSVTDAV---TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLF 71

Query: 179 LSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHF 238
           L+ N L  +     L+ L  L  L L    +      L     L  L  L L +  +   
Sbjct: 72  LNGNKLTDIKP---LTNLKNLGWLFLDENKIKD----LSSLKDLKKLKSLSLEHNGISDI 124

Query: 239 SLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPN 298
           + L   +   L  L L +N+                 L  LT L  L L+ N   S I  
Sbjct: 125 NGL--VHLPQLESLYLGNNKITD-----------ITVLSRLTKLDTLSLEDNQI-SDIVP 170

Query: 299 WLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKS 358
            L     L+ L LS N +    D  AL  L ++  L+L        +     ++L    +
Sbjct: 171 -LAGLTKLQNLYLSKNHIS---DLRALAGLKNLDVLELFSQE-CLNKPINHQSNLVVPNT 225

Query: 359 LNL 361
           +  
Sbjct: 226 VKN 228

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 92.5 bits (229), Expect = 2e-19
 Identities = 54/310 (17%), Positives = 96/310 (30%), Gaps = 61/310 (19%)

Query: 150 LRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNL 209
           +       T I  + P      +     +L    +         + L+ ++ +   + ++
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDI 55

Query: 210 SKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVF 269
                 +     LP++ +L L   +L     L   N  +L  L L +N+           
Sbjct: 56  KS----VQGIQYLPNVTKLFLNGNKLTDIKPLT--NLKNLGWLFLDENKIKDL------- 102

Query: 270 GPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLT 329
                 L++L  L+ L L+ N   S I   L     LE L L NN +    D   L  LT
Sbjct: 103 ----SSLKDLKKLKSLSLEHNGI-SDING-LVHLPQLESLYLGNNKIT---DITVLSRLT 153

Query: 330 SISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLD 389
            +  L L  N     +I   +  L  L    L+ ++LS+              N +  L 
Sbjct: 154 KLDTLSLEDN-----QI-SDIVPLAGLT--KLQNLYLSK--------------NHISDLR 191

Query: 390 LRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSA 449
                        L   KN+  L+  +   +         L     ++  D  L      
Sbjct: 192 ------------ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEII 239

Query: 450 IHFANLTKLS 459
               +  K +
Sbjct: 240 SDDGDYEKPN 249

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 90.6 bits (224), Expect = 8e-19
 Identities = 51/245 (20%), Positives = 97/245 (39%), Gaps = 31/245 (12%)

Query: 117 PSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQF 176
            +  +L  +  +  + +D + +Q       + N+  L L+  ++  + P  L NL NL +
Sbjct: 37  VTQNELNSIDQIIANNSDIKSVQ---GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGW 91

Query: 177 LDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLH 236
           L L  N +  + +   L  L  L+ L L    +S     +     LP L  L L N ++ 
Sbjct: 92  LFLDENKIKDLSS---LKDLKKLKSLSLEHNGISD----INGLVHLPQLESLYLGNNKIT 144

Query: 237 HFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSI 296
             ++L  +  + L  L L DNQ     I           L  LT L++L L  NH  S +
Sbjct: 145 DITVL--SRLTKLDTLSLEDNQISD--IV---------PLAGLTKLQNLYLSKNHI-SDL 190

Query: 297 PNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNL 356
              L    +L+ L L +        ++ + + +++   +   N       P  ++   + 
Sbjct: 191 RA-LAGLKNLDVLELFSQ----ECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDY 245

Query: 357 KSLNL 361
           +  N+
Sbjct: 246 EKPNV 250

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 90.2 bits (223), Expect = 1e-18
 Identities = 57/316 (18%), Positives = 108/316 (34%), Gaps = 48/316 (15%)

Query: 403 LGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFR 462
              F   +  +    S+   +     +L+++  +  N++ +  ++  I    L  ++   
Sbjct: 17  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQGI--QYLPNVTKLF 71

Query: 463 VDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPI 522
           ++GNKLT       I P                    L + K+L +L+L  + I D+  +
Sbjct: 72  LNGNKLTD------IKP--------------------LTNLKNLGWLFLDENKIKDLSSL 105

Query: 523 RFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLIS-SNLVFLDLS 581
           + LK    LK L L  N I   I  L     L  L + +N ++    L   + L  L L 
Sbjct: 106 KDLKK---LKSLSLEHNGISD-INGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLE 161

Query: 582 NNLFSGSISPFLCYRINETKSLNALQLNDNYLN--GELPDCWMSYQNLKTLKLSNNKFTG 639
           +N  S  I P           L  L L+ N+++    L       +NL  L+L + +   
Sbjct: 162 DNQIS-DIVPL-----AGLTKLQNLYLSKNHISDLRALAGL----KNLDVLELFSQECLN 211

Query: 640 NLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSR 699
                  +L     +   +  L    ++S        ++     EF   +     +  + 
Sbjct: 212 KPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTI 271

Query: 700 MVVLILRSNKFHGPLP 715
                    +   PL 
Sbjct: 272 GKAKARFHGRVTQPLK 287

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 82.8 bits (204), Expect = 2e-16
 Identities = 47/244 (19%), Positives = 95/244 (38%), Gaps = 26/244 (10%)

Query: 506 LQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMS 565
           +     V++ I  IFP        +    +L +  +        E   +  +   ++++ 
Sbjct: 1   MGETITVSTPIKQIFPDDAFA---ETIKDNLKKKSVTD-AVTQNELNSIDQIIANNSDIK 56

Query: 566 GPLPLIS-SNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLN--GELPDCWM 622
               +    N+  L L+ N  +  I P     +   K+L  L L++N +     L D   
Sbjct: 57  SVQGIQYLPNVTKLFLNGNKLT-DIKP-----LTNLKNLGWLFLDENKIKDLSSLKDL-- 108

Query: 623 SYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGE 682
             + LK+L L +N  + ++   +  L  L  L+LG N+++   +  L   T L++L + +
Sbjct: 109 --KKLKSLSLEHNGIS-DIN-GLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLED 162

Query: 683 NEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCI 742
           N+ + +I        +++  L L  N         L  L  L +L++          N  
Sbjct: 163 NQ-ISDIVPL--AGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQ 217

Query: 743 NNLT 746
           +NL 
Sbjct: 218 SNLV 221

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 79.0 bits (194), Expect = 4e-15
 Identities = 53/379 (13%), Positives = 121/379 (31%), Gaps = 78/379 (20%)

Query: 275 GLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWL 334
                       L       ++         ++ +  +N+ ++     + +  L +++ L
Sbjct: 16  PDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK---SVQGIQYLPNVTKL 70

Query: 335 DLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQ-EISEILDIFSGCVSNGLESLDLRSD 393
            L+ N     ++   +  L NLK  NL  + L + +I ++         + L+ L     
Sbjct: 71  FLNGN-----KL-TDIKPLTNLK--NLGWLFLDENKIKDL---------SSLKDL----- 108

Query: 394 SIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFA 453
                        K + +L   +N I  +    L  L  L  L + +NK+   ++ +  +
Sbjct: 109 -------------KKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKIT-DITVL--S 150

Query: 454 NLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVN 513
            LTKL    ++ N+++       I P                          LQ LYL  
Sbjct: 151 RLTKLDTLSLEDNQISD------IVPLA--------------------GLTKLQNLYLSK 184

Query: 514 SSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPN-LTEFTGLLILSVYSNNMSGPLPLIS 572
           + ISD+  +  LK+   L  L+L   +      N  +       +     ++  P   IS
Sbjct: 185 NHISDLRALAGLKN---LDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEI-IS 240

Query: 573 SNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLN-DNYLNGELPDCWMSYQNLKTLK 631
            +  +   +        +  + +   +  ++   +      +   L + +    ++    
Sbjct: 241 DDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTV 300

Query: 632 LSNNKFTGNLPYSMGSLTS 650
           +      G    +    T 
Sbjct: 301 IKTKVEAGTRITAPKPPTK 319

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 51.6 bits (123), Expect = 9e-07
 Identities = 30/151 (19%), Positives = 56/151 (37%), Gaps = 12/151 (7%)

Query: 117 PSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQF 176
             L+ L  L  L L  N    I        +  L  L+L   +I  ++P  L  L+ LQ 
Sbjct: 125 NGLVHLPQLESLYLGNN---KITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQN 179

Query: 177 LDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLH 236
           L LS N++  +     L+GL  L+ L+L S             + L     ++  +  L 
Sbjct: 180 LYLSKNHISDLRA---LAGLKNLDVLELFSQECLNKPINHQ--SNLVVPNTVKNTDGSLV 234

Query: 237 HFSLLATANFSSLTVLDLSDNQFDKWFIPSW 267
              ++  ++       ++  +  +     S+
Sbjct: 235 TPEII--SDDGDYEKPNVKWHLPEFTNEVSF 263

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 44.3 bits (104), Expect = 2e-04
 Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 8/101 (7%)

Query: 795 RMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSG 854
             + ++ N  +   PL   NLK L  L    N     +  S+  ++ L+S+    N +S 
Sbjct: 68  TKLFLNGNKLTDIKPLT--NLKNLGWLFLDENKIK-DL-SSLKDLKKLKSLSLEHNGIS- 122

Query: 855 EIPESMSSLTFLNHLNLSNNNLTG--KIPSSTQLQSFDVSS 893
           +I   +  L  L  L L NN +T    +   T+L +  +  
Sbjct: 123 DI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLED 162

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.6 bits (102), Expect = 3e-04
 Identities = 36/270 (13%), Positives = 83/270 (30%), Gaps = 91/270 (33%)

Query: 627 LKTLKLSNNKFT--GNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENE 684
           +      +              +    +  +L +  ++    V+     +++ +    ++
Sbjct: 1   MGETITVSTPIKQIFPDD----AFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSD 54

Query: 685 FVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINN 744
            + ++                           G+  L  +  L +  N L+      I  
Sbjct: 55  -IKSV--------------------------QGIQYLPNVTKLFLNGNKLT-----DIKP 82

Query: 745 LTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNF 804
           LT +                                           NL   + +  N  
Sbjct: 83  LTNLK------------------------------------------NL-GWLFLDENKI 99

Query: 805 SGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLT 864
                L+  +LK L+SL+  +N  +  I   +  +  LES+    N+++      +S LT
Sbjct: 100 KDLSSLK--DLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKIT--DITVLSRLT 153

Query: 865 FLNHLNLSNNNLT--GKIPSSTQLQSFDVS 892
            L+ L+L +N ++    +   T+LQ+  +S
Sbjct: 154 KLDTLSLEDNQISDIVPLAGLTKLQNLYLS 183

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 90.5 bits (225), Expect = 8e-20
 Identities = 54/223 (24%), Positives = 87/223 (39%), Gaps = 30/223 (13%)

Query: 117 PSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQF 176
            +  DL  ++ L         I+       + NL  L L   +I  + P  L NL+ +  
Sbjct: 35  VTQADLDGITTLSAFGTGVTTIE---GVQYLNNLIGLELKDNQITDLAP--LKNLTKITE 89

Query: 177 LDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLH 236
           L+LS N L  V     ++GL  ++ LDL S  ++     +     L +L  L L   Q+ 
Sbjct: 90  LELSGNPLKNVSA---IAGLQSIKTLDLTSTQITD----VTPLAGLSNLQVLYLDLNQIT 142

Query: 237 HFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSI 296
           + S L  A  ++L  L + + Q                 L NL+ L  L  D N   S I
Sbjct: 143 NISPL--AGLTNLQYLSIGNAQVSDL-----------TPLANLSKLTTLKADDNKI-SDI 188

Query: 297 PNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLN 339
              L    +L  + L NN +    D   L N +++  + L+  
Sbjct: 189 SP-LASLPNLIEVHLKNNQIS---DVSPLANTSNLFIVTLTNQ 227

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 87.1 bits (216), Expect = 1e-18
 Identities = 55/295 (18%), Positives = 101/295 (34%), Gaps = 61/295 (20%)

Query: 149 NLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVN 208
           N   +   ++ +   +     +L  +  L      +  ++    +  L+ L  L+L+   
Sbjct: 20  NAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEG---VQYLNNLIGLELKDNQ 74

Query: 209 LSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWV 268
           ++     L     L  + EL L+   L + S +  A   S+  LDL+  Q          
Sbjct: 75  ITD----LAPLKNLTKITELELSGNPLKNVSAI--AGLQSIKTLDLTSTQITDVT----- 123

Query: 269 FGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNL 328
                  L  L++L+ L LD N   ++I   L    +L+YLS+ N  +    D   L NL
Sbjct: 124 ------PLAGLSNLQVLYLDLNQI-TNISP-LAGLTNLQYLSIGNAQVS---DLTPLANL 172

Query: 329 TSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESL 388
           + ++ L    N     +I   ++ L +L   NL  VHL               +N +  +
Sbjct: 173 SKLTTLKADDN-----KI-SDISPLASLP--NLIEVHLK--------------NNQISDV 210

Query: 389 DLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKL 443
                         L    N+  +   N +I          L    V++      
Sbjct: 211 ------------SPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 86.7 bits (215), Expect = 1e-18
 Identities = 50/245 (20%), Positives = 88/245 (35%), Gaps = 33/245 (13%)

Query: 119 LLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLD 178
              L +   +    ++            +  +  L+   T +  +    +  L+NL  L+
Sbjct: 15  DPALANAIKIAAGKSNVTDTV---TQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLE 69

Query: 179 LSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHF 238
           L  N +  +     L  L+ +  L+L    L      +     L S+  L L + Q+   
Sbjct: 70  LKDNQITDLAP---LKNLTKITELELSGNPLKN----VSAIAGLQSIKTLDLTSTQITDV 122

Query: 239 SLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPN 298
           + L  A  S+L VL L  NQ     I           L  LT+L++L + +    S +  
Sbjct: 123 TPL--AGLSNLQVLYLDLNQITN--IS---------PLAGLTNLQYLSIGNAQV-SDLTP 168

Query: 299 WLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKS 358
            L     L  L   +N +    D   L +L ++  + L  N  I    P  +A+  NL  
Sbjct: 169 -LANLSKLTTLKADDNKIS---DISPLASLPNLIEVHLKNN-QISDVSP--LANTSNLFI 221

Query: 359 LNLRG 363
           + L  
Sbjct: 222 VTLTN 226

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 85.1 bits (211), Expect = 4e-18
 Identities = 52/245 (21%), Positives = 96/245 (39%), Gaps = 31/245 (12%)

Query: 117 PSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQF 176
             +  L +L  L+L  N    +       ++  +  L LS   +  +    +  L +++ 
Sbjct: 57  EGVQYLNNLIGLELKDNQITDLA---PLKNLTKITELELSGNPLKNVSA--IAGLQSIKT 111

Query: 177 LDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLH 236
           LDL+S  +  V     L+GLS L+ L L    ++     +     L +L  L + N Q+ 
Sbjct: 112 LDLTSTQITDVTP---LAGLSNLQVLYLDLNQITN----ISPLAGLTNLQYLSIGNAQVS 164

Query: 237 HFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSI 296
             + L  AN S LT L   DN+     I           L +L +L  + L +N  +   
Sbjct: 165 DLTPL--ANLSKLTTLKADDNKISD--IS---------PLASLPNLIEVHLKNNQISDVS 211

Query: 297 PNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNL 356
           P  L    +L  ++L+N     TI ++ +    ++   ++          P +++     
Sbjct: 212 P--LANTSNLFIVTLTNQ----TITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTY 265

Query: 357 KSLNL 361
            S NL
Sbjct: 266 ASPNL 270

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 81.7 bits (202), Expect = 6e-17
 Identities = 57/317 (17%), Positives = 112/317 (35%), Gaps = 74/317 (23%)

Query: 275 GLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWL 334
               L +   +    ++   ++         +  LS     +      E +  L ++  L
Sbjct: 14  PDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT---TIEGVQYLNNLIGL 68

Query: 335 DLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDS 394
           +L  N     +I   +A L NL  +              L+       N L+++      
Sbjct: 69  ELKDN-----QI-TDLAPLKNLTKI------------TELE----LSGNPLKNVS----- 101

Query: 395 IYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFAN 454
                   +   ++I TLD  +  I  + P  L  LS L+VL ++ N++   +S +  A 
Sbjct: 102 -------AIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQIT-NISPL--AG 149

Query: 455 LTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNS 514
           LT L +  +   +++       + P       L                  L  L   ++
Sbjct: 150 LTNLQYLSIGNAQVSD------LTPLA----NLSK----------------LTTLKADDN 183

Query: 515 SISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSN 574
            ISDI P+  L +   L  + L  NQI   +  L   + L I+++ +  ++      ++N
Sbjct: 184 KISDISPLASLPN---LIEVHLKNNQISD-VSPLANTSNLFIVTLTNQTITNQPVFYNNN 239

Query: 575 LVFLDLSNNLFSGSISP 591
           LV  ++        I+P
Sbjct: 240 LVVPNVVKGPSGAPIAP 256

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 80.9 bits (200), Expect = 1e-16
 Identities = 56/298 (18%), Positives = 106/298 (35%), Gaps = 37/298 (12%)

Query: 403 LGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFR 462
                N + +    +++   +      L  +  L      +  T+  +    L  L    
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEGV--QYLNNLIGLE 69

Query: 463 VDGNKLTLGVKHDWIPPF----QLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISD 518
           +  N++T       + P     ++  L L    + +   +     + ++ L L ++ I+D
Sbjct: 70  LKDNQIT------DLAPLKNLTKITELELSGNPLKNVSAI--AGLQSIKTLDLTSTQITD 121

Query: 519 IFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLIS-SNLVF 577
           + P+  L     L+ L L  NQI   I  L   T L  LS+ +  +S   PL + S L  
Sbjct: 122 VTPLAGLS---NLQVLYLDLNQITN-ISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTT 177

Query: 578 LDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKF 637
           L   +N  S  ISP     +    +L  + L +N ++   P    S  NL  + L+N   
Sbjct: 178 LKADDNKIS-DISP-----LASLPNLIEVHLKNNQISDVSPLANTS--NLFIVTLTNQTI 229

Query: 638 TGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGE 695
           T    +   +L          N + G     +   T  ++          N+ ++I  
Sbjct: 230 TNQPVFYNNNLVVP-------NVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINN 280

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 75.1 bits (185), Expect = 1e-14
 Identities = 62/334 (18%), Positives = 123/334 (36%), Gaps = 60/334 (17%)

Query: 416 NNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHD 475
             +I  + P     L+    +    + +  T++    A+L  ++     G  +T      
Sbjct: 6   PTAINVIFP--DPALANAIKIAAGKSNVTDTVT---QADLDGITTLSAFGTGVTT----- 55

Query: 476 WIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLD 535
            I   Q                       +L  L L ++ I+D+ P++ L    ++  L+
Sbjct: 56  -IEGVQ--------------------YLNNLIGLELKDNQITDLAPLKNLT---KITELE 91

Query: 536 LGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLIS-SNLVFLDLSNNLFSGSISPFLC 594
           L  N +   +  +     +  L + S  ++   PL   SNL  L L  N  + +ISP   
Sbjct: 92  LSGNPLKN-VSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQIT-NISP--- 146

Query: 595 YRINETKSLNALQLNDNYLNG--ELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLV 652
             +    +L  L + +  ++    L +       L TLK  +NK + ++   + SL +L+
Sbjct: 147 --LAGLTNLQYLSIGNAQVSDLTPLANL----SKLTTLKADDNKIS-DIS-PLASLPNLI 198

Query: 653 WLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHG 712
            +HL  N++S   +  L N + L  + +        I        + +VV  +       
Sbjct: 199 EVHLKNNQISD--VSPLANTSNLFIVTLTNQ----TITNQPVFYNNNLVVPNVVKGPSGA 252

Query: 713 PLPTGLCDLAFLQILDIADNNLSGAIPNCINNLT 746
           P+               A  NL+  + + INN++
Sbjct: 253 PIA----PATISDNGTYASPNLTWNLTSFINNVS 282

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 51/365 (13%), Positives = 105/365 (28%), Gaps = 140/365 (38%)

Query: 513 NSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLIS 572
            ++I+ IFP   L        +  G++ +        +                      
Sbjct: 6   PTAINVIFPDPALA---NAIKIAAGKSNVTD-TVTQADLD-------------------- 41

Query: 573 SNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKL 632
             +  L                       ++  +Q                  NL  L+L
Sbjct: 42  -GITTLSAFGTGV---------------TTIEGVQ---------------YLNNLIGLEL 70

Query: 633 SNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTW 692
            +N+ T +L   + +LT +  L L  N L    + ++    ++++LD+   + + ++   
Sbjct: 71  KDNQIT-DLA-PLKNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQ-ITDVT-- 123

Query: 693 IGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTAC 752
                                    L  L+ LQ+L +  N ++      I+ L G+    
Sbjct: 124 ------------------------PLAGLSNLQVLYLDLNQITN-----ISPLAGLT--- 151

Query: 753 SFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEV 812
                                                  NL + + I     S   PL  
Sbjct: 152 ---------------------------------------NL-QYLSIGNAQVSDLTPLA- 170

Query: 813 TNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLS 872
            NL  L +L    N  +      +  + +L  +    NQ+S      +++ + L  + L+
Sbjct: 171 -NLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDV--SPLANTSNLFIVTLT 225

Query: 873 NNNLT 877
           N  +T
Sbjct: 226 NQTIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 34/249 (13%), Positives = 86/249 (34%), Gaps = 63/249 (25%)

Query: 647 SLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILR 706
           +L + + +  G++ ++    V+  +   + +L       V  I     +  + ++ L L+
Sbjct: 17  ALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTG-VTTIEGV--QYLNNLIGLELK 71

Query: 707 SNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPI 766
            N+     P  L +L  +  L+++ N L       ++ + G+                  
Sbjct: 72  DNQITDLAP--LKNLTKITELELSGNPLKN-----VSAIAGLQ----------------- 107

Query: 767 DVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYN 826
                                    ++ + +D++    +   PL    L  LQ L    N
Sbjct: 108 -------------------------SI-KTLDLTSTQITDVTPLA--GLSNLQVLYLDLN 139

Query: 827 SFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTG--KIPSST 884
             T      +  + +L+ +     Q+S ++   +++L+ L  L   +N ++    + S  
Sbjct: 140 QITN--ISPLAGLTNLQYLSIGNAQVS-DL-TPLANLSKLTTLKADDNKISDISPLASLP 195

Query: 885 QLQSFDVSS 893
            L    + +
Sbjct: 196 NLIEVHLKN 204

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 88.5 bits (220), Expect = 2e-19
 Identities = 44/221 (19%), Positives = 72/221 (32%), Gaps = 45/221 (20%)

Query: 149 NLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYL--LYVDNFWWLSGLSFLEHLDLRS 206
           + + L+LS   +  +  +   +   LQ LDLS   +  +    +     LS L  L L  
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY---QSLSHLSTLILTG 85

Query: 207 VNLS----KAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQ---- 258
             +      AF        L SL +L      L         +  +L  L+++ N     
Sbjct: 86  NPIQSLALGAFS------GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139

Query: 259 -----FDK--------------WFIPSWVFGPIPRGLQNLTSLR-HLGLDSNHFNSSIPN 298
                F                  I         R L  +  L   L L  N   + I  
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDL----RVLHQMPLLNLSLDLSLNPM-NFIQP 194

Query: 299 WLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLN 339
             ++ I L+ L+L  N L+ ++       LTS+  + L  N
Sbjct: 195 GAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 76.9 bits (190), Expect = 2e-15
 Identities = 47/211 (22%), Positives = 76/211 (36%), Gaps = 28/211 (13%)

Query: 114 KINPSLLD-LKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLS 172
            +          L  LDLS  + Q I+    + S+ +L  L L+   I  +       LS
Sbjct: 42  HLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100

Query: 173 NLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDL-----RSVNLSKAFDWLMVTNKLPSLVE 227
           +LQ L      L  ++NF  +  L  L+ L++     +S  L + F        L +L  
Sbjct: 101 SLQKLVAVETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFS------NLTNLEH 153

Query: 228 LRLANCQLHHFSLLATANFSSLTV----LDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLR 283
           L L++ ++             + +    LDLS N  +           I  G      L+
Sbjct: 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF----------IQPGAFKEIRLK 203

Query: 284 HLGLDSNHFNSSIPNWLYRFIHLEYLSLSNN 314
            L LD+N   S       R   L+ + L  N
Sbjct: 204 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 74.6 bits (184), Expect = 1e-14
 Identities = 50/206 (24%), Positives = 79/206 (38%), Gaps = 30/206 (14%)

Query: 172 SNLQFLDLSSNYL--LYVDNFWWLSGLSFLEHLDLRSVNLSK----AFDWLMVTNKLPSL 225
            + + LDLS N L  L   +F        L+ LDL    +      A+        L  L
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSF---FSFPELQVLDLSRCEIQTIEDGAYQ------SLSHL 78

Query: 226 VELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHL 285
             L L    +   +L A +  SSL  L   +       + ++  G       +L +L+ L
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS--LENFPIG-------HLKTLKEL 129

Query: 286 GLDSNHFNS-SIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMG--- 341
            +  N   S  +P +     +LE+L LS+N +Q +I    L  L  +  L+LSL++    
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 342 IEGRIPRSMASLCNLKSLNLRGVHLS 367
           +   I         LK L L    L 
Sbjct: 189 MN-FIQPGAFKEIRLKELALDTNQLK 213

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 70.4 bits (173), Expect = 2e-13
 Identities = 48/222 (21%), Positives = 88/222 (39%), Gaps = 18/222 (8%)

Query: 223 PSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSL 282
            S   L L+   L H    +  +F  L VLDLS  +     I    +       Q+L+ L
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT--IEDGAY-------QSLSHL 78

Query: 283 RHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGI 342
             L L  N   S           L+ L     +L  ++++  +G+L ++  L+++ N+  
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ 137

Query: 343 EGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTD- 401
             ++P   ++L NL+ L+L    + Q I              +  L+L  D     +   
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKI-QSIYC--TDLRVLHQ--MPLLNLSLDLSLNPMNFI 192

Query: 402 QLGQFKNI--VTLDFANNSIVGLIPESLGQLSTLRVLRINDN 441
           Q G FK I    L    N +  +      +L++L+ + ++ N
Sbjct: 193 QPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 70.4 bits (173), Expect = 3e-13
 Identities = 54/227 (23%), Positives = 85/227 (37%), Gaps = 25/227 (11%)

Query: 246 FSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLY-RFI 304
             S   LDLS N      + S+ F        +   L+ L L       +I +  Y    
Sbjct: 27  PFSTKNLDLSFNPLRH--LGSYSF-------FSFPELQVLDLSRCEI-QTIEDGAYQSLS 76

Query: 305 HLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMAS-LCNLKSLNLRG 363
           HL  L L+ N +Q ++   A   L+S+  L       +   +       L  LK LN+  
Sbjct: 77  HLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVET-NLA-SLENFPIGHLKTLKELNVAH 133

Query: 364 VHLSQEISEILDIFSGCVSNGLESLDLRS---DSIYGHLTDQLGQFKNI-VTLDFANNSI 419
             +        + FS   +  LE LDL S    SIY      L Q   + ++LD + N +
Sbjct: 134 NLIQSFKLP--EYFSNLTN--LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189

Query: 420 VGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGN 466
              I     +   L+ L ++ N+L  ++    F  LT L    +  N
Sbjct: 190 NF-IQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 64.6 bits (158), Expect = 2e-11
 Identities = 52/253 (20%), Positives = 85/253 (33%), Gaps = 48/253 (18%)

Query: 408 NIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNK 467
           +   LD + N +  L   S      L+VL ++  ++  T+    + +L+ LS   + GN 
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP 87

Query: 468 LTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKS 527
           +        +       L                    LQ L  V ++++ +        
Sbjct: 88  IQS------LALGAFSGLS------------------SLQKLVAVETNLASLENFPI-GH 122

Query: 528 ASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSG 587
              LK L++  N I         F+ L                  +NL  LDLS+N    
Sbjct: 123 LKTLKELNVAHNLIQS-FKLPEYFSNL------------------TNLEHLDLSSNKIQ- 162

Query: 588 SISPFLCYRINETKSLNA-LQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMG 646
           SI       +++   LN  L L+ N +N  +         LK L L  N+          
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFD 221

Query: 647 SLTSLVWLHLGEN 659
            LTSL  + L  N
Sbjct: 222 RLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 58.1 bits (141), Expect = 4e-09
 Identities = 53/254 (20%), Positives = 86/254 (33%), Gaps = 54/254 (21%)

Query: 272 IPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSI 331
           IP  L    S ++L L  N          + F  L+ L LS   +Q TI+  A  +L+ +
Sbjct: 22  IPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHL 78

Query: 332 SWLDLSLNM--GIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLD 389
           S L L+ N    +        + L +L+ L                     V   L SL 
Sbjct: 79  STLILTGNPIQSLALGAF---SGLSSLQKLVA-------------------VETNLASL- 115

Query: 390 LRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLI-PESLGQLSTLRVLRINDNKLNGTLS 448
              +   GHL         +  L+ A+N I     PE    L+ L  L ++ NK+  ++ 
Sbjct: 116 --ENFPIGHLK-------TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIY 165

Query: 449 AIHFANLTKLSWFRV----DGNKLTLGVKHDWIPP-----FQLVALGLRNCYVGSRFPLW 499
                 L ++    +      N +       +I P      +L  L L    + S     
Sbjct: 166 CTDLRVLHQMPLLNLSLDLSLNPMN------FIQPGAFKEIRLKELALDTNQLKSVPDGI 219

Query: 500 LYSQKHLQFLYLVN 513
                 LQ ++L  
Sbjct: 220 FDRLTSLQKIWLHT 233

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 34/144 (23%), Positives = 54/144 (37%), Gaps = 32/144 (22%)

Query: 121 DLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQF---- 176
            LK L  L+++ N  Q  ++P +F ++ NL +L+LS  +I  +    L  L  +      
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181

Query: 177 LDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLH 236
           LDLS N + ++                        AF  +        L EL L   QL 
Sbjct: 182 LDLSLNPMNFIQ---------------------PGAFKEI-------RLKELALDTNQLK 213

Query: 237 HFSLLATANFSSLTVLDLSDNQFD 260
                     +SL  + L  N +D
Sbjct: 214 SVPDGIFDRLTSLQKIWLHTNPWD 237

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 47.7 bits (114), Expect = 8e-06
 Identities = 43/223 (19%), Positives = 69/223 (30%), Gaps = 35/223 (15%)

Query: 531 LKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSIS 590
            K LDL  N +   + +   F                       L  LDLS      +I 
Sbjct: 30  TKNLDLSFNPLRH-LGS-YSFFSF------------------PELQVLDLSRCEIQ-TIE 68

Query: 591 P--FLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSL 648
              +          L+ L L  N +       +    +L+ L            + +G L
Sbjct: 69  DGAY-----QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123

Query: 649 TSLVWLHLGENRLSGNILVSL-KNCTALESLDVGENEFVGNIPTWIGERFSRMVV----L 703
            +L  L++  N +    L     N T LE LD+  N+   +I         +M +    L
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSL 182

Query: 704 ILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLT 746
            L  N  +  +  G      L+ L +  N L        + LT
Sbjct: 183 DLSLNPMNF-IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLT 224

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 44.6 bits (106), Expect = 8e-05
 Identities = 48/258 (18%), Positives = 71/258 (27%), Gaps = 61/258 (23%)

Query: 626 NLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLS---GNILVSLKNCTALESLDVGE 682
           + K L LS N       YS  S   L  L L    +         SL +   L +L +  
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH---LSTLILTG 85

Query: 683 NEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGL-CDLAFLQILDIADNNLSGAIPNC 741
           N  + ++        S +  L+         L       L  L+ L++A N +       
Sbjct: 86  NP-IQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLI------- 136

Query: 742 INNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISR 801
                             Q   LP                    +Y   L  +  +D+S 
Sbjct: 137 ------------------QSFKLP--------------------EYFSNLTNLEHLDLSS 158

Query: 802 NNFSGKIPLEV----TNLKALQ-SLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEI 856
           N     I          +  L  SL+ S N     I         L+ +    NQL    
Sbjct: 159 NKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVP 216

Query: 857 PESMSSLTFLNHLNLSNN 874
                 LT L  + L  N
Sbjct: 217 DGIFDRLTSLQKIWLHTN 234

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 90.8 bits (226), Expect = 3e-19
 Identities = 77/471 (16%), Positives = 144/471 (30%), Gaps = 86/471 (18%)

Query: 123 KHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGM----IPHHLGNLSNLQFLD 178
             +  LD+   +    +       +   + + L    +       I   L     L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 179 LSSNYLLYVDNFWWLSGLSF----LEHLDLRSVNLS----KAFDWLMVTNKLPSLVELRL 230
           L SN L  V     L GL      ++ L L++  L+          + T   P+L EL L
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTL--PTLQELHL 120

Query: 231 ANCQLHH--FSLLATA---NFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHL 285
           ++  L      LL          L  L L         + +    P+   L+     + L
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-----LSAASCEPLASVLRAKPDFKEL 175

Query: 286 GLDSNHFNSSIPNWLYRFI-----HLEYLSLSNNSL--QGTID-SEALGNLTSISWLDLS 337
            + +N  N +    L + +      LE L L +  +      D    + +  S+  L L 
Sbjct: 176 TVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALG 235

Query: 338 LN----MGIEGRIPRSMASLCNLKSLNLRGVHLSQE----ISEILDIFSGCVSNGLESLD 389
            N    +G+    P  +     L++L +    ++ +    +  +L          L+ L 
Sbjct: 236 SNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL-----RAKESLKELS 290

Query: 390 LR----SDSIYGHLTDQLGQF-KNIVTLDFANNSI----VGLIPESLGQLSTLRVLRIND 440
           L      D     L + L +    + +L   + S            L Q   L  L+I++
Sbjct: 291 LAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISN 350

Query: 441 NKLNGTLSAIHFA-----NLTKLSWFRVDGNKLTL-GVKHDWIPPFQLVALGLRNCYVGS 494
           N+L                 + L    +    ++              +A  L       
Sbjct: 351 NRL-EDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSS--------LAATLLAN---- 397

Query: 495 RFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKS----ASQLKFLDLGQNQI 541
                      L+ L L N+ + D   ++ ++S       L+ L L     
Sbjct: 398 ---------HSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 81.5 bits (202), Expect = 3e-16
 Identities = 89/511 (17%), Positives = 148/511 (28%), Gaps = 117/511 (22%)

Query: 172 SNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLS----KAFDWLMVTNKLPSLVE 227
            ++Q LD+    L        L  L   + + L    L+    K     +  N  P+L E
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVN--PALAE 60

Query: 228 LRLANCQLHH--FSLLATA---NFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSL 282
           L L + +L       +          +  L L +               +   L+ L +L
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG---AGCGV--LSSTLRTLPTL 115

Query: 283 RHLGLDSNHFNSSIPNWLYRFI-----HLEYLSLSNNSL--QGTID-SEALGNLTSISWL 334
           + L L  N    +    L   +      LE L L   SL        +  L        L
Sbjct: 116 QELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKEL 175

Query: 335 DLSLN-MGIEG--RIPRSMA-SLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDL 390
            +S N +   G   + + +  S C L++L L    ++ +          C          
Sbjct: 176 TVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSD---------NCR--------- 217

Query: 391 RSDSIYGHLTDQLGQFKNIVTLDFANNSI-----VGLIPESLGQLSTLRVLRINDNKLNG 445
                   L   +    ++  L   +N +       L P  L   S LR L I +  +  
Sbjct: 218 -------DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI-T 269

Query: 446 TLSAIHFA----NLTKLSWFRVDGNKLT-LGVKHDWIPPFQLVALGLRNCYVGSRFPLWL 500
                           L    + GN+L   G +        L+   L             
Sbjct: 270 AKGCGDLCRVLRAKESLKELSLAGNELGDEGAR--------LLCETLLEP---------- 311

Query: 501 YSQKHLQFLYLVNSSISDIFPIRF---LKSASQLKFLDLGQNQIHGPIPNLTEFTGLLIL 557
                L+ L++ + S +      F   L     L  L +  N++           G+  L
Sbjct: 312 --GCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED--------AGVREL 361

Query: 558 SVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGE- 616
                     L    S L  L L++   S S    L   +    SL  L L++N L    
Sbjct: 362 CQG-------LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG 414

Query: 617 ---------LPDCWMSYQNLKTLKLSNNKFT 638
                     P C      L+ L L +  ++
Sbjct: 415 ILQLVESVRQPGC-----LLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 73.1 bits (180), Expect = 2e-13
 Identities = 74/451 (16%), Positives = 142/451 (31%), Gaps = 86/451 (19%)

Query: 329 TSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQE-ISEILDIFSGCVSNGLES 387
             I  LD+      + R    +  L   + + L    L++    +I        +  L  
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPA--LAE 60

Query: 388 LDLRSDSIYG----HLTDQLGQFK-NIVTLDFANNSI----VGLIPESLGQLSTLRVLRI 438
           L+LRS+ +       +   L      I  L   N  +     G++  +L  L TL+ L +
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 439 NDNKLNGT----LSAIHFANLTKLSWFRVDGNKLT-LGVKHDWIPPFQLVALGLRNCYVG 493
           +DN L       L         +L   +++   L+    +         +A  LR     
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP--------LASVLRAK--- 169

Query: 494 SRFPLWLYSQKHLQFLYLVNSSISD----IFPIRFLKSASQLKFLDLGQNQIHGPIPNLT 549
                        + L + N+ I++    +       S  QL+ L L    +       T
Sbjct: 170 ----------PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGV-------T 212

Query: 550 EFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLC-YRINETKSLNALQL 608
                 +  + ++          ++L  L L +N         LC   ++ +  L  L +
Sbjct: 213 SDNCRDLCGIVASK---------ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWI 263

Query: 609 NDNYLNGE----LPDCWMSYQNLKTLKLSNNKFTGN-----LPYSMGSLTSLVWLHLGEN 659
            +  +  +    L     + ++LK L L+ N+             +     L  L +   
Sbjct: 264 WECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 323

Query: 660 RLSG----NILVSLKNCTALESLDVGENEF----VGNIPTWIGERFSRMVVLILRSNKFH 711
             +     +    L     L  L +  N      V  +   +G+  S + VL L      
Sbjct: 324 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383

Query: 712 GPLPTGLCDLAF-------LQILDIADNNLS 735
               +    LA        L+ LD+++N L 
Sbjct: 384 ---DSSCSSLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 72.7 bits (179), Expect = 2e-13
 Identities = 65/364 (17%), Positives = 109/364 (29%), Gaps = 58/364 (15%)

Query: 119 LLDLKHLSYLDLSFNDFQGIQIPRFFGSMGN----LRYLNLSRTRIGGMIPHHLG----N 170
           L  L  L  L LS N      +      + +    L  L L    +       L      
Sbjct: 109 LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRA 168

Query: 171 LSNLQFLDLSSNYLLYVDNFWWLSGLSF----LEHLDLRSVNLS----KAFDWLMVTNKL 222
             + + L +S+N +          GL      LE L L S  ++    +    ++ +   
Sbjct: 169 KPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKA- 227

Query: 223 PSLVELRLANCQLH--HFSLLATA---NFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQ 277
            SL EL L + +L     + L        S L  L + +               + R L+
Sbjct: 228 -SLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGD-----LCRVLR 281

Query: 278 NLTSLRHLGLDSNHFNSSIPNWLYRFI-----HLEYLSLSNNSL--QGTID-SEALGNLT 329
              SL+ L L  N         L   +      LE L + + S         S  L    
Sbjct: 282 AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR 341

Query: 330 SISWLDLSLN-MGIEGRIPRSMA---SLCNLKSLNLRGVHLS----QEISEILDIFSGCV 381
            +  L +S N +   G              L+ L L    +S      ++  L       
Sbjct: 342 FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATL-----LA 396

Query: 382 SNGLESLDLR----SDSIYGHLTDQLGQFKNIV-TLDFANNSI----VGLIPESLGQLST 432
           ++ L  LDL      D+    L + + Q   ++  L   +          +        +
Sbjct: 397 NHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPS 456

Query: 433 LRVL 436
           LRV+
Sbjct: 457 LRVI 460

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 56.1 bits (136), Expect = 3e-08
 Identities = 65/401 (16%), Positives = 121/401 (30%), Gaps = 76/401 (18%)

Query: 504 KHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNN 563
             +Q L +    +SD      L    Q + + L    +       TE     I S    N
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL-------TEARCKDISSALRVN 55

Query: 564 MSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRI-NETKSLNALQLNDNYLNGE----LP 618
                      L  L+L +N         +   +   +  +  L L +  L G     L 
Sbjct: 56  ---------PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 106

Query: 619 DCWMSYQNLKTLKLSNNKFTGNLPYSMGSL-----TSLVWLHLGENRLS----GNILVSL 669
               +   L+ L LS+N         +          L  L L    LS      +   L
Sbjct: 107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL 166

Query: 670 KNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDI 729
           +     + L V  N+        I E   R++   L+ +               L+ L +
Sbjct: 167 RAKPDFKELTVSNND--------INEAGVRVLCQGLKDSPCQ------------LEALKL 206

Query: 730 ADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYED 789
               ++        +L G+V + +  R +        DVG+  +                
Sbjct: 207 ESCGVTSD---NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPG----------LLH 253

Query: 790 ILNLVRMIDISRNNFSGK----IPLEVTNLKALQSLNFSYNSFTG----RIPESIG-VMR 840
             + +R + I     + K    +   +   ++L+ L+ + N         + E++     
Sbjct: 254 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGC 313

Query: 841 SLESIDFSANQLSGE----IPESMSSLTFLNHLNLSNNNLT 877
            LES+   +   +          ++   FL  L +SNN L 
Sbjct: 314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 54.6 bits (132), Expect = 1e-07
 Identities = 92/515 (17%), Positives = 151/515 (29%), Gaps = 121/515 (23%)

Query: 407 KNIVTLDFANNSIVGL-IPESLGQLSTLRVLRINDNKLNGTLSAIHFA----NLTKLSWF 461
            +I +LD     +      E L  L   +V+R++D  L         +        L+  
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL-TEARCKDISSALRVNPALAEL 61

Query: 462 RVDGNKLT-LGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISD-- 518
            +  N+L  +GV          V  GL+                 +Q L L N  ++   
Sbjct: 62  NLRSNELGDVGVHC--------VLQGLQTP------------SCKIQKLSLQNCCLTGAG 101

Query: 519 ---IFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNL 575
              +     L++   L+ L L  N +           GL +L          L      L
Sbjct: 102 CGVLSST--LRTLPTLQELHLSDNLLGD--------AGLQLLC-------EGLLDPQCRL 144

Query: 576 VFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGE--------LPDCWMSYQNL 627
             L L     S +    L   +        L +++N +N          L D   S   L
Sbjct: 145 EKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKD---SPCQL 201

Query: 628 KTLKLSNNKFT----GNLPYSMGSLTSLVWLHLGENRLSGNILVSL-----KNCTALESL 678
           + LKL +   T     +L   + S  SL  L LG N+L    +  L        + L +L
Sbjct: 202 EALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTL 261

Query: 679 DVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAI 738
            + E          I  +    +  +LR+ +        L  LA  ++ D     L   +
Sbjct: 262 WIWECG--------ITAKGCGDLCRVLRAKESL----KEL-SLAGNELGDEGARLLCETL 308

Query: 739 PNCINNLTG-MVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMI 797
                 L    V +CSFT                        ++           L   +
Sbjct: 309 LEPGCQLESLWVKSCSFT-----------AACCSHFSSVLAQNR----------FL-LEL 346

Query: 798 DISRNNFSGK------IPLEVTNLKALQSLNFSYNSFT----GRIPESIGVMRSLESIDF 847
            IS N             L       L+ L  +    +      +  ++    SL  +D 
Sbjct: 347 QISNNRLEDAGVRELCQGLGQPG-SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDL 405

Query: 848 SANQLSGE----IPES-MSSLTFLNHLNLSNNNLT 877
           S N L       + ES       L  L L +   +
Sbjct: 406 SNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 46.1 bits (110), Expect = 5e-05
 Identities = 40/347 (11%), Positives = 99/347 (28%), Gaps = 90/347 (25%)

Query: 571 ISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGE----LPDCWMSYQN 626
           +S ++  LD+     S +    L   +   +    ++L+D  L       +         
Sbjct: 1   MSLDIQSLDIQCEELSDARWAELLPLL---QQCQVVRLDDCGLTEARCKDISSALRVNPA 57

Query: 627 LKTLKLSNNKFTGNLPYSMGSL--------TSLVWLHLGENRLS----GNILVSLKNCTA 674
           L  L L +N+        +  +          +  L L    L+    G +  +L+    
Sbjct: 58  LAELNLRSNELG---DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPT 114

Query: 675 LESLDVGENEF----VGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAF------- 723
           L+ L + +N      +  +   + +   R+  L L               LA        
Sbjct: 115 LQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS---AASCEPLASVLRAKPD 171

Query: 724 LQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGE 783
            + L +++N+++                               + GV ++ +    S  +
Sbjct: 172 FKELTVSNNDIN-------------------------------EAGVRVLCQGLKDSPCQ 200

Query: 784 MVDYEDILNLVRMIDISRNNFSGK----IPLEVTNLKALQSLNFSYNSFTGRIPESIGVM 839
           +            + +     +      +   V +  +L+ L    N         +   
Sbjct: 201 L----------EALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPG 250

Query: 840 -----RSLESIDFSANQLSGE----IPESMSSLTFLNHLNLSNNNLT 877
                  L ++      ++ +    +   + +   L  L+L+ N L 
Sbjct: 251 LLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 87.3 bits (216), Expect = 9e-19
 Identities = 52/266 (19%), Positives = 89/266 (33%), Gaps = 20/266 (7%)

Query: 487 LRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIP 546
             NC   +   L+   +     L  V++          +KS   LK L +   +I   I 
Sbjct: 27  AFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKS-LSLKRLTVRAARIPSRIL 85

Query: 547 ----NLTEFTGLLILSVYSNNMSGPLP-----LISSNLVFLDLSNNLFSGSISPFLCYRI 597
                +   +GL  L++ +  ++G  P         +L  L+L N  ++   +     + 
Sbjct: 86  FGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQ 145

Query: 598 NETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNL-------PYSMGSLTS 650
                L  L +   +      +    +  L TL LS+N   G         P    +L  
Sbjct: 146 WLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQV 205

Query: 651 LVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKF 710
           L   + G    SG           L+ LD+  N           +  S++  L L     
Sbjct: 206 LALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL 265

Query: 711 HGPLPTGLCDLAFLQILDIADNNLSG 736
              +P GL   A L +LD++ N L  
Sbjct: 266 KQ-VPKGL--PAKLSVLDLSYNRLDR 288

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 84.2 bits (208), Expect = 1e-17
 Identities = 43/237 (18%), Positives = 64/237 (27%), Gaps = 45/237 (18%)

Query: 111 LVGKINPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGN-----LRYLNLSRTRIGGMIP 165
           + G   P LL+        L+  +        +   +       L+ L++++        
Sbjct: 107 VTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC 166

Query: 166 HHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSL 225
             +     L  LDLS N  L                               +   K P+L
Sbjct: 167 EQVRVFPALSTLDLSDNPELGERGLI-----------------------SALCPLKFPTL 203

Query: 226 VELRLANCQLHHFSLLA---TANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSL 282
             L L N  +   S +     A    L  LDLS N                      + L
Sbjct: 204 QVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD--------AAGAPSCDWPSQL 255

Query: 283 RHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLN 339
             L L        +P  L     L  L LS N L      + L  + +   L L  N
Sbjct: 256 NSLNLSFTGL-KQVPKGL--PAKLSVLDLSYNRLDRNPSPDELPQVGN---LSLKGN 306

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 73.4 bits (180), Expect = 4e-14
 Identities = 49/289 (16%), Positives = 82/289 (28%), Gaps = 31/289 (10%)

Query: 145 GSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLS--GLSFLEHL 202
           G       L    T         +    +L+ L + +  +     F  L   G+S L+ L
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 203 DLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFS----SLTVLDLSDNQ 258
            L ++ ++      ++    P L  L L N                    L VL ++   
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160

Query: 259 FDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNW----LYRFIHLEYLSLSNN 314
              +              +   +L  L L  N               +F  L+ L+L N 
Sbjct: 161 SLNFSCEQV---------RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA 211

Query: 315 SLQ--GTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISE 372
            ++    + S        +  LDLS N   +     S      L SLNL    L Q    
Sbjct: 212 GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ---- 267

Query: 373 ILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVG 421
                   +   L  LDL  + +         +   +  L    N  + 
Sbjct: 268 ----VPKGLPAKLSVLDLSYNRL--DRNPSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 71.1 bits (174), Expect = 2e-13
 Identities = 46/282 (16%), Positives = 85/282 (30%), Gaps = 29/282 (10%)

Query: 606 LQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSM---GSLTSLVWLHLGENRLS 662
           L+  D   +       +   +LK L +   +    + +       ++ L  L L    ++
Sbjct: 49  LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108

Query: 663 GNILVSLKNCT--ALESLDVGENEFVGN---IPTWIGERFSRMVVLILRSNKFHGPLPTG 717
           G     L   T   L  L++    +      +          + VL +            
Sbjct: 109 GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ 168

Query: 718 LCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKAS 777
           +     L  LD++DN   G           +   C       Q L L            S
Sbjct: 169 VRVFPALSTLDLSDNPELGERGL-------ISALCPLKFPTLQVLALRNAGMETPSGVCS 221

Query: 778 VVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEV-TNLKALQSLNFSYNSFTGRIPESI 836
            ++             ++ +D+S N+               L SLN S+     ++P+ +
Sbjct: 222 ALAAA--------RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL 272

Query: 837 GVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTG 878
                L  +D S N+L    P S   L  + +L+L  N    
Sbjct: 273 P--AKLSVLDLSYNRLD-RNP-SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 70.7 bits (173), Expect = 3e-13
 Identities = 60/325 (18%), Positives = 106/325 (32%), Gaps = 59/325 (18%)

Query: 272 IPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSI 331
           +  G ++L  L  L       +      + + + L+ L++    +   I   AL  L   
Sbjct: 38  LYGGGRSLEYL--LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGIS 95

Query: 332 SWLDLSL-NMGIEGRIPRSMASLC--NLKSLNLRGVHLSQEISEILDIFSGCVSNGLESL 388
              +L+L N+ + G  P  +      +L  LNLR V  +   + + ++    +  GL+ L
Sbjct: 96  GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQ-WLKPGLKVL 154

Query: 389 DLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPES----LGQLSTLRVLRINDNKLN 444
            +          +Q+  F  + TLD ++N  +G           +  TL+VL + +  + 
Sbjct: 155 SIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME 214

Query: 445 GTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQK 504
            T S +  A                                                   
Sbjct: 215 -TPSGVCSALAAAR---------------------------------------------V 228

Query: 505 HLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNM 564
            LQ L L ++S+ D          SQL  L+L    +      L     L +L +  N +
Sbjct: 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL--PAKLSVLDLSYNRL 286

Query: 565 SG-PLPLISSNLVFLDLSNNLFSGS 588
              P P     +  L L  N F  S
Sbjct: 287 DRNPSPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 57.6 bits (139), Expect = 7e-09
 Identities = 25/98 (25%), Positives = 34/98 (34%), Gaps = 6/98 (6%)

Query: 109 TALVGKINPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHL 168
               G  +        L  LDLS N  +             L  LNLS T +   +P  L
Sbjct: 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VPKGL 272

Query: 169 GNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRS 206
              + L  LDLS N L    +      L  + +L L+ 
Sbjct: 273 --PAKLSVLDLSYNRLDRNPSPD---ELPQVGNLSLKG 305

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 54.9 bits (132), Expect = 5e-08
 Identities = 44/266 (16%), Positives = 73/266 (27%), Gaps = 40/266 (15%)

Query: 646 GSLTSLVWLHLGEN-RLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGE--RFSRMVV 702
           G   SL +L    +          +    +L+ L V        I          S +  
Sbjct: 40  GGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQE 99

Query: 703 LILRSNKFHG--PLPTGLCDLAFLQILDIADNNLSG---AIPNCINNLTGMVTACSFTRS 757
           L L + +  G  P P        L IL++ + + +     +      L   +   S  ++
Sbjct: 100 LTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA 159

Query: 758 VQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVT---- 813
                                           +   +  +D+S N   G+  L       
Sbjct: 160 HSLNFSCEQ---------------------VRVFPALSTLDLSDNPELGERGLISALCPL 198

Query: 814 NLKALQSLNFSYNSFT---GRIPESIGVMRSLESIDFSANQLSGEIPESMSS-LTFLNHL 869
               LQ L           G           L+ +D S N L            + LN L
Sbjct: 199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSL 258

Query: 870 NLSNNNLTGKIPS--STQLQSFDVSS 893
           NLS   L  ++P     +L   D+S 
Sbjct: 259 NLSFTGLK-QVPKGLPAKLSVLDLSY 283

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 48.4 bits (115), Expect = 6e-06
 Identities = 25/131 (19%), Positives = 47/131 (35%), Gaps = 18/131 (13%)

Query: 794 VRMIDISRNNFSGKIP----LEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSA 849
           + ++++   +++ +      L+      L+ L+ +         E + V  +L ++D S 
Sbjct: 123 LNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSD 182

Query: 850 NQLSGEI-------PESMSSLTFLNHLNLSNNNLTGKIPSS----TQLQSFDVSSFAGND 898
           N   GE        P    +L  L   N      +G   +      QLQ  D+S    N 
Sbjct: 183 NPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSH---NS 239

Query: 899 LCGAPLPKNCT 909
           L  A    +C 
Sbjct: 240 LRDAAGAPSCD 250

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 84.3 bits (209), Expect = 3e-18
 Identities = 51/220 (23%), Positives = 88/220 (40%), Gaps = 22/220 (10%)

Query: 149 NLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVN 208
           + + L L  T +  +  H   NL N+  + +S +  L          LS + H+++R+  
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 209 L-----SKAFDWLMVTNKLPSLVELRLANCQLHHF-SLLATANFSSLTVLDLSDNQFDKW 262
                   A        +LP L  L + N  L  F  L    +     +L+++DN +   
Sbjct: 92  NLTYIDPDALK------ELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMT- 144

Query: 263 FIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDS 322
            IP   F    +GL N      L L +N F +S+  + +    L+ + L+ N     ID 
Sbjct: 145 SIPVNAF----QGLCNE--TLTLKLYNNGF-TSVQGYAFNGTKLDAVYLNKNKYLTVIDK 197

Query: 323 EALGNLTS-ISWLDLSLNMGIEGRIPRSMASLCNLKSLNL 361
           +A G + S  S LD+S    +     + +  L  L + N 
Sbjct: 198 DAFGGVYSGPSLLDVSQTS-VTALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 68.9 bits (169), Expect = 5e-13
 Identities = 35/214 (16%), Positives = 74/214 (34%), Gaps = 42/214 (19%)

Query: 122 LKHLSYLDLSFND-FQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHH-LGNLSNLQFLDL 179
           L ++S + +S +   Q ++    F ++  + ++ +  TR    I    L  L  L+FL +
Sbjct: 54  LPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGI 112

Query: 180 SSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFS 239
            +  L    +   +        L++                           N  +    
Sbjct: 113 FNTGLKMFPDLTKVYSTDIFFILEITD-------------------------NPYMTSIP 147

Query: 240 LLATANFSSLTV-LDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPN 298
           + A     + T+ L L +N F    +  + F        N T L  + L+ N + + I  
Sbjct: 148 VNAFQGLCNETLTLKLYNNGF--TSVQGYAF--------NGTKLDAVYLNKNKYLTVIDK 197

Query: 299 WLYRFIH--LEYLSLSNNSLQGTIDSEALGNLTS 330
             +  ++     L +S  S+   + S+ L +L  
Sbjct: 198 DAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKE 230

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 40/237 (16%), Positives = 77/237 (32%), Gaps = 41/237 (17%)

Query: 408 NIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNK 467
           +  TL      +  +   +   L  +  + ++ +     L +  F NL+K++   +   +
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 468 -LTLGVKHDWIPP--FQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRF 524
            LT       I P   +     L                  L+FL + N+ +     +  
Sbjct: 92  NLTY------IDPDALK----ELPL----------------LKFLGIFNTGLKMFPDLTK 125

Query: 525 LKSASQLKFLDLGQNQIHGPIPNLTEFTGL----LILSVYSNNMS--GPLPLISSNLVFL 578
           + S      L++  N     IP    F GL    L L +Y+N  +         + L  +
Sbjct: 126 VYSTDIFFILEITDNPYMTSIPVNA-FQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAV 184

Query: 579 DLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNN 635
            L+ N +   I              + L ++   +   LP      ++LK L   N 
Sbjct: 185 YLNKNKYLTVIDKDAFG--GVYSGPSLLDVSQTSVT-ALPS--KGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 50.4 bits (121), Expect = 8e-07
 Identities = 35/257 (13%), Positives = 76/257 (29%), Gaps = 59/257 (22%)

Query: 626 NLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGEN----RLSGNILVSLKNCTALESLDVG 681
           + +TLKL          ++  +L ++  +++  +    +L  +   +L     +  +++ 
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSK---VTHIEIR 88

Query: 682 ENEFVGNIPTWIGERFSRMVVLILRSNKFHG-PLPTGLCDLAFLQILDIADNNLSGAIP- 739
               +  I     +    +  L + +      P  T +       IL+I DN    +IP 
Sbjct: 89  NTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

Query: 740 NCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDI 799
           N    L                                              N    + +
Sbjct: 149 NAFQGLC---------------------------------------------NETLTLKL 163

Query: 800 SRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESI--GVMRSLESIDFSANQLSGEIP 857
             N F+  +     N   L ++  + N +   I +    GV      +D S   ++  +P
Sbjct: 164 YNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALP 221

Query: 858 -ESMSSLTFLNHLNLSN 873
            + +  L  L   N   
Sbjct: 222 SKGLEHLKELIARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 23/180 (12%), Positives = 61/180 (33%), Gaps = 15/180 (8%)

Query: 568 LPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELP-DCWMSYQN 626
           +P +  +   L L       +I        +   +++ + ++ +    +L    + +   
Sbjct: 26  IPSLPPSTQTLKLIETHLR-TIPSHA---FSNLPNISRIYVSIDVTLQQLESHSFYNLSK 81

Query: 627 LKTLKLSNNKFTGNLPYSM-GSLTSLVWLHLGENRLSG-NILVSLKNCTALESLDVGENE 684
           +  +++ N +    +       L  L +L +    L     L  + +      L++ +N 
Sbjct: 82  VTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNP 141

Query: 685 FVGNIPTWIGERFSRM----VVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPN 740
           ++ +IP      F  +    + L L +N F   +     +   L  + +  N     I  
Sbjct: 142 YMTSIPVNA---FQGLCNETLTLKLYNNGFTS-VQGYAFNGTKLDAVYLNKNKYLTVIDK 197

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 28/166 (16%), Positives = 45/166 (27%), Gaps = 38/166 (22%)

Query: 121 DLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHH-LGNLSN-LQFLD 178
           +L  L +L +     +         S      L ++       IP +    L N    L 
Sbjct: 103 ELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLK 162

Query: 179 LSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLA-NCQLHH 237
           L +N    V                        AF+          L  + L  N  L  
Sbjct: 163 LYNNGFTSVQ---------------------GYAFN-------GTKLDAVYLNKNKYLTV 194

Query: 238 FSLLATAN-FSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSL 282
               A    +S  ++LD+S        +PS         L+ L + 
Sbjct: 195 IDKDAFGGVYSGPSLLDVSQTSVTA--LPSKGL----EHLKELIAR 234

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.5 bits (98), Expect = 6e-04
 Identities = 29/216 (13%), Positives = 69/216 (31%), Gaps = 41/216 (18%)

Query: 531 LKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSIS 590
            + L L +  +   IP+   F+ L                   N+  + +S ++    + 
Sbjct: 33  TQTLKLIETHLRT-IPSHA-FSNL------------------PNISRIYVSIDVTLQQLE 72

Query: 591 PFLCYRINETKSLNALQLNDNYLNGELP-DCWMSYQNLKTLKLSNNKFTGNLP--YSMGS 647
                       +  +++ +      +  D       LK L + N       P    + S
Sbjct: 73  SHS---FYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYS 128

Query: 648 LTSLVWLHLGEN----RLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERF--SRMV 701
                 L + +N     +  N    L N     +L +  N F  ++  +    F  +++ 
Sbjct: 129 TDIFFILEITDNPYMTSIPVNAFQGLCN--ETLTLKLYNNGF-TSVQGYA---FNGTKLD 182

Query: 702 VLILRSNKFHGPLPTGLCD--LAFLQILDIADNNLS 735
            + L  NK+   +         +   +LD++  +++
Sbjct: 183 AVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 84.0 bits (208), Expect = 1e-17
 Identities = 45/243 (18%), Positives = 76/243 (31%), Gaps = 31/243 (12%)

Query: 119 LLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLD 178
                     +L                + ++  +  + + I  +    +  L N+  L 
Sbjct: 20  DDAFAETIKDNLKKKSVTDAV---TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLF 74

Query: 179 LSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHF 238
           L+ N L  +     L+ L  L  L L    +      L     L  L  L L +  +   
Sbjct: 75  LNGNKLTDIKP---LANLKNLGWLFLDENKVKD----LSSLKDLKKLKSLSLEHNGISDI 127

Query: 239 SLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPN 298
           + L   +   L  L L +N+                 L  LT L  L L+ N   S I  
Sbjct: 128 NGL--VHLPQLESLYLGNNKITD-----------ITVLSRLTKLDTLSLEDNQI-SDIVP 173

Query: 299 WLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKS 358
            L     L+ L LS N +    D  AL  L ++  L+L        +     ++L    +
Sbjct: 174 -LAGLTKLQNLYLSKNHIS---DLRALAGLKNLDVLELFSQE-CLNKPINHQSNLVVPNT 228

Query: 359 LNL 361
           +  
Sbjct: 229 VKN 231

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 82.4 bits (204), Expect = 3e-17
 Identities = 59/268 (22%), Positives = 106/268 (39%), Gaps = 32/268 (11%)

Query: 117 PSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQF 176
            +  +L  +  +  + +D + +Q       + N+  L L+  ++  + P  L NL NL +
Sbjct: 40  VTQNELNSIDQIIANNSDIKSVQ---GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGW 94

Query: 177 LDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLH 236
           L L  N +  + +   L  L  L+ L L    +S     +     LP L  L L N ++ 
Sbjct: 95  LFLDENKVKDLSS---LKDLKKLKSLSLEHNGISD----INGLVHLPQLESLYLGNNKIT 147

Query: 237 HFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSI 296
             ++L  +  + L  L L DNQ     I           L  LT L++L L  NH  S +
Sbjct: 148 DITVL--SRLTKLDTLSLEDNQISD--IV---------PLAGLTKLQNLYLSKNHI-SDL 193

Query: 297 PNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNL 356
              L    +L+ L L +             NL   + +  +    +    P  ++   + 
Sbjct: 194 RA-LAGLKNLDVLELFSQECL-NKPINHQSNLVVPNTVKNTDGSLVT---PEIISDDGDY 248

Query: 357 KSLNLRGVHLSQEISEILDIFSGCVSNG 384
           +  N++  HL +  +E+  IF   V+ G
Sbjct: 249 EKPNVK-WHLPEFTNEVSFIFYQPVTIG 275

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 77.8 bits (192), Expect = 1e-15
 Identities = 50/276 (18%), Positives = 86/276 (31%), Gaps = 59/276 (21%)

Query: 168 LGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVE 227
               +     +L    +         + L+ ++ +   + ++      +     LP++ +
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKS----VQGIQYLPNVTK 72

Query: 228 LRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGL 287
           L L   +L     LA  N  +L  L L +N+                 L++L  L+ L L
Sbjct: 73  LFLNGNKLTDIKPLA--NLKNLGWLFLDENKVKDL-----------SSLKDLKKLKSLSL 119

Query: 288 DSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIP 347
           + N   S I   L     LE L L NN +    D   L  LT +  L L  N     +I 
Sbjct: 120 EHNGI-SDING-LVHLPQLESLYLGNNKIT---DITVLSRLTKLDTLSLEDN-----QI- 168

Query: 348 RSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFK 407
             +  L  L  L            + L +      N +  L              L   K
Sbjct: 169 SDIVPLAGLTKL------------QNLYLSK----NHISDLR------------ALAGLK 200

Query: 408 NIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKL 443
           N+  L+  +   +         L     ++  D  L
Sbjct: 201 NLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 71.2 bits (175), Expect = 2e-13
 Identities = 46/241 (19%), Positives = 92/241 (38%), Gaps = 26/241 (10%)

Query: 509 LYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPL 568
              V + I  IF         +    +L +  +        E   +  +   ++++    
Sbjct: 7   TITVPTPIKQIFSDDAFA---ETIKDNLKKKSVTD-AVTQNELNSIDQIIANNSDIKSVQ 62

Query: 569 PLIS-SNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLN--GELPDCWMSYQ 625
            +    N+  L L+ N  +  I P     +   K+L  L L++N +     L D     +
Sbjct: 63  GIQYLPNVTKLFLNGNKLT-DIKP-----LANLKNLGWLFLDENKVKDLSSLKDL----K 112

Query: 626 NLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEF 685
            LK+L L +N  + ++   +  L  L  L+LG N+++   +  L   T L++L + +N+ 
Sbjct: 113 KLKSLSLEHNGIS-DIN-GLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQ- 167

Query: 686 VGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNL 745
           + +I        +++  L L  N         L  L  L +L++          N  +NL
Sbjct: 168 ISDIVPL--AGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQSNL 223

Query: 746 T 746
            
Sbjct: 224 V 224

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 69.3 bits (170), Expect = 7e-13
 Identities = 45/253 (17%), Positives = 83/253 (32%), Gaps = 34/253 (13%)

Query: 416 NNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHD 475
              I  +        +      +    +     A+    L  +     + + +       
Sbjct: 11  PTPIKQIFS--DDAFAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNSDIKS----- 60

Query: 476 WIPPFQ----LVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQL 531
            +   Q    +  L L    +    P  L + K+L +L+L  + + D+  ++ LK    L
Sbjct: 61  -VQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKK---L 114

Query: 532 KFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLIS-SNLVFLDLSNNLFSGSIS 590
           K L L  N I   I  L     L  L + +N ++    L   + L  L L +N  S  I 
Sbjct: 115 KSLSLEHNGISD-INGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS-DIV 172

Query: 591 PFLCYRINETKSLNALQLNDNYLN--GELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSL 648
           P           L  L L+ N+++    L       +NL  L+L + +          +L
Sbjct: 173 PL-----AGLTKLQNLYLSKNHISDLRALAGL----KNLDVLELFSQECLNKPINHQSNL 223

Query: 649 TSLVWLHLGENRL 661
                +   +  L
Sbjct: 224 VVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 68.2 bits (167), Expect = 2e-12
 Identities = 57/317 (17%), Positives = 101/317 (31%), Gaps = 79/317 (24%)

Query: 300 LYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLN--MGIEGRIPRSMASLCNLK 357
              F      +L   S+    D+     L SI  +  + +    ++G     +  L N+ 
Sbjct: 20  DDAFAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNSDIKSVQG-----IQYLPNVT 71

Query: 358 SLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANN 417
            L L G     ++++I                             L   KN+  L    N
Sbjct: 72  KLFLNG----NKLTDI---------------------------KPLANLKNLGWLFLDEN 100

Query: 418 SIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWI 477
            +  L   SL  L  L+ L +  N ++  ++ +   +L +L    +  NK+T       I
Sbjct: 101 KVKDL--SSLKDLKKLKSLSLEHNGIS-DINGL--VHLPQLESLYLGNNKITD------I 149

Query: 478 PPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLG 537
                                       L  L L ++ ISDI P+  L     L+ L L 
Sbjct: 150 TVLS--------------------RLTKLDTLSLEDNQISDIVPLAGLTK---LQNLYLS 186

Query: 538 QNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRI 597
           +N I   +  L     L +L ++S           SNLV  +   N     ++P +   I
Sbjct: 187 KNHISD-LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEI---I 242

Query: 598 NETKSLNALQLNDNYLN 614
           ++        +  +   
Sbjct: 243 SDDGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.3 bits (100), Expect = 5e-04
 Identities = 36/232 (15%), Positives = 78/232 (33%), Gaps = 63/232 (27%)

Query: 647 SLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIG-ERFSRMVVLIL 705
           +    +  +L +  ++    V+     +++ +    +    +I +  G +    +  L L
Sbjct: 22  AFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNS----DIKSVQGIQYLPNVTKLFL 75

Query: 706 RSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLP 765
             NK        L +L  L  L + +N +       +++L                    
Sbjct: 76  NGNKLTDI--KPLANLKNLGWLFLDENKVK-----DLSSLKD------------------ 110

Query: 766 IDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSY 825
                                    L  ++ + +  N  S    L   +L  L+SL    
Sbjct: 111 -------------------------LKKLKSLSLEHNGISDINGLV--HLPQLESLYLGN 143

Query: 826 NSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLT 877
           N  T      +  +  L+++    NQ+S +I   ++ LT L +L LS N+++
Sbjct: 144 NKIT--DITVLSRLTKLDTLSLEDNQIS-DI-VPLAGLTKLQNLYLSKNHIS 191

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 84.1 bits (208), Expect = 2e-17
 Identities = 45/214 (21%), Positives = 81/214 (37%), Gaps = 12/214 (5%)

Query: 149 NLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVN 208
           N   L    T++  +         +L+ +++S N +L V      S L  L  + +   N
Sbjct: 31  NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 209 LSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWV 268
                +     N LP+L  L ++N  + H   +   +     +LD+ DN      I    
Sbjct: 91  NLLYINPEAFQN-LPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNS 148

Query: 269 FGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLS-NNSLQGTIDSEALGN 327
           F     GL        L L+ N     I N  +    L+ L+LS NN+L+  + ++    
Sbjct: 149 F----VGLSFE--SVILWLNKNGI-QEIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHG 200

Query: 328 LTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNL 361
            +    LD+S    I       + +L  L++ + 
Sbjct: 201 ASGPVILDISRT-RIHSLPSYGLENLKKLRARST 233

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 76.4 bits (188), Expect = 6e-15
 Identities = 37/225 (16%), Positives = 75/225 (33%), Gaps = 28/225 (12%)

Query: 122 LKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRT-RIGGMIPHHLGNLSNLQFLDLS 180
              L  +++S ND   +     F ++  L  + + +   +  + P    NL NLQ+L +S
Sbjct: 53  FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLIS 112

Query: 181 SNYLLYVDNFWWLSGLSFLEHLDLRSVNL------SKAFDWLMVTNKLPSLVELRLANCQ 234
           +  + ++ +   +  L     LD++  N+        +F  L         V L L    
Sbjct: 113 NTGIKHLPDVHKIHSLQ-KVLLDIQD-NINIHTIERNSFVGLS-----FESVILWLNKNG 165

Query: 235 LHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNS 294
           +      A        +    +N  ++  +P+ VF          +    L +     +S
Sbjct: 166 IQEIHNSAFNGTQLDELNLSDNNNLEE--LPNDVF-------HGASGPVILDISRTRIHS 216

Query: 295 SIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLN 339
                L     L   S  N     T++      L ++    L+  
Sbjct: 217 LPSYGLENLKKLRARSTYNLKKLPTLE-----KLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 68.3 bits (167), Expect = 3e-12
 Identities = 54/276 (19%), Positives = 87/276 (31%), Gaps = 54/276 (19%)

Query: 406 FKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRV-D 464
            +N + L F    +  +   +      L  + I+ N +   + A  F+NL KL   R+  
Sbjct: 29  PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88

Query: 465 GNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRF 524
            N L       +I P     L                   +LQ+L + N+ I  +  +  
Sbjct: 89  ANNLL------YINPEAFQNL------------------PNLQYLLISNTGIKHLPDVHK 124

Query: 525 LKSASQLKFLDLGQN-QIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNN 583
           + S  Q   LD+  N  IH  I   + F GL                 S   V L L+ N
Sbjct: 125 IHS-LQKVLLDIQDNINIHT-IERNS-FVGL-----------------SFESVILWLNKN 164

Query: 584 LFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPY 643
                I        N T+       ++N L     D +        L +S  +      Y
Sbjct: 165 GIQ-EIHNSAF---NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY 220

Query: 644 SMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLD 679
            + +L  L        +     L +L+   AL    
Sbjct: 221 GLENLKKLRARSTYNLK----KLPTLEKLVALMEAS 252

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 64.5 bits (157), Expect = 5e-11
 Identities = 45/294 (15%), Positives = 85/294 (28%), Gaps = 33/294 (11%)

Query: 248 SLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLE 307
           S  V    +++  +          IP  L    +   L                 F  LE
Sbjct: 10  SNRVFLCQESKVTE----------IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLE 57

Query: 308 YLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSM-ASLCNLKSLNLRGVHL 366
            + +S N +   I+++   NL  +  + +     +   I      +L NL+ L +    +
Sbjct: 58  KIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGI 116

Query: 367 SQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQL--GQFKNIVTLDFANNSIVGLIP 424
                  L       S     LD++ +     +      G     V L    N I  +  
Sbjct: 117 KH-----LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN 171

Query: 425 ESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPP--FQ- 481
            +        +   ++N L   L    F   +      +   ++        +P    + 
Sbjct: 172 SAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH------SLPSYGLEN 224

Query: 482 LVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLD 535
           L  L  R+ Y   + P  L     L    L   S    F   + +  S+L  + 
Sbjct: 225 LKKLRARSTYNLKKLP-TLEKLVALMEASLTYPSHCCAF-ANWRRQISELHPIC 276

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 50.2 bits (120), Expect = 2e-06
 Identities = 38/324 (11%), Positives = 82/324 (25%), Gaps = 42/324 (12%)

Query: 626 NLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNI-LVSLKNCTALESLDVGENE 684
           N   L+    K       +      L  + + +N +   I      N   L  + + +  
Sbjct: 31  NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 685 FVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIP-NCIN 743
            +  I     +    +  L++ +                  +LDI DN     I  N   
Sbjct: 91  NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV 150

Query: 744 NLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNN 803
            L+         ++  Q +                          +   L  +     NN
Sbjct: 151 GLSFESVILWLNKNGIQEIH---------------------NSAFNGTQLDELNLSDNNN 189

Query: 804 FSGKIPLEV-TNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDF-SANQLSGEIPESMS 861
              ++P +V         L+ S       +P     + +L+ +   S   L  ++P ++ 
Sbjct: 190 LE-ELPNDVFHGASGPVILDISRTRIH-SLPS--YGLENLKKLRARSTYNLK-KLP-TLE 243

Query: 862 SLTFLNHLNLSNN-----------NLTGKIPSSTQLQSFDVSSFAGNDLCGAPLPKNCTE 910
            L  L   +L+              ++   P   +        +               E
Sbjct: 244 KLVALMEASLTYPSHCCAFANWRRQISELHPICNKSILRQEVDYMTQARGQRSSLAEDNE 303

Query: 911 NVSISEDENGDEDEDEVDHWLYVS 934
           +      +    + D       V 
Sbjct: 304 SSYSRGFDMTYTEFDYDLCNEVVD 327

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 33/221 (14%), Positives = 63/221 (28%), Gaps = 31/221 (14%)

Query: 531 LKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSIS 590
              L     ++   I     F+G                    +L  +++S N     I 
Sbjct: 32  AIELRFVLTKLRV-IQK-GAFSGF------------------GDLEKIEISQNDVLEVIE 71

Query: 591 PFLCYRINETKSLNALQL-NDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLT 649
             +    +    L+ +++   N L    P+ + +  NL+ L +SN               
Sbjct: 72  ADV---FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 128

Query: 650 SLVWLHLGEN----RLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLIL 705
             V L + +N     +  N  V L        L + +N     I            + + 
Sbjct: 129 QKVLLDIQDNINIHTIERNSFVGL--SFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLS 185

Query: 706 RSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLT 746
            +N             +   ILDI+   +       + NL 
Sbjct: 186 DNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLK 226

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 82.5 bits (204), Expect = 2e-17
 Identities = 42/194 (21%), Positives = 63/194 (32%), Gaps = 23/194 (11%)

Query: 149 NLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRS-- 206
           +   L+LS   +       L   + L  L+L    L  +        L  L  LDL    
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG---TLPVLGTLDLSHNQ 88

Query: 207 -VNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIP 265
             +L            LP+L  L ++  +L    L A      L  L L  N+     +P
Sbjct: 89  LQSLPLLGQ------TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK--TLP 140

Query: 266 SWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEAL 325
             +             L  L L +N+        L    +L+ L L  NSL  TI     
Sbjct: 141 PGLL-------TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFF 192

Query: 326 GNLTSISWLDLSLN 339
           G+   + +  L  N
Sbjct: 193 GSH-LLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 62.4 bits (152), Expect = 2e-10
 Identities = 39/174 (22%), Positives = 50/174 (28%), Gaps = 39/174 (22%)

Query: 117 PSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQF 176
                L  L  LDLS N  Q   +P    ++  L  L++S  R+  +    L  L  LQ 
Sbjct: 71  QVDGTLPVLGTLDLSHNQLQ--SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128

Query: 177 LDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLH 236
           L L  N             L  L                       P L +L LAN  L 
Sbjct: 129 LYLKGN------------ELKTLPP---------GLLT------PTPKLEKLSLANNNLT 161

Query: 237 HFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSN 290
                      +L  L L +N              IP+G      L    L  N
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYT----------IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 56.7 bits (137), Expect = 1e-08
 Identities = 42/223 (18%), Positives = 60/223 (26%), Gaps = 47/223 (21%)

Query: 247 SSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHL 306
           +S   ++                  +P  L        L L  N   +     L  +  L
Sbjct: 10  ASHLEVNCDKRNLTA----------LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRL 57

Query: 307 EYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHL 366
             L+L    L      +  G L  +  LDLS N      +P    +L  L  L++     
Sbjct: 58  TQLNLDRAELTKL---QVDGTLPVLGTLDLSHNQ--LQSLPLLGQTLPALTVLDVS---- 108

Query: 367 SQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPES 426
                           N L SL          L         +  L    N +  L P  
Sbjct: 109 ---------------FNRLTSL---PLGALRGLG-------ELQELYLKGNELKTLPPGL 143

Query: 427 LGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLT 469
           L     L  L + +N L   L A     L  L    +  N L 
Sbjct: 144 LTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY 185

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 55.1 bits (133), Expect = 4e-08
 Identities = 38/162 (23%), Positives = 58/162 (35%), Gaps = 24/162 (14%)

Query: 223 PSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGP----------- 271
                L L+   L+ FSL     ++ LT L+L   +  K  +   V G            
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQ--VDGTLPVLGTLDLSH 86

Query: 272 -----IPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALG 326
                +P   Q L +L  L +  N   S     L     L+ L L  N L+ T+    L 
Sbjct: 87  NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLT 145

Query: 327 NLTSISWLDLSLNMGIEGRIPRSM-ASLCNLKSLNLRGVHLS 367
               +  L L+ N  +   +P  +   L NL +L L+   L 
Sbjct: 146 PTPKLEKLSLANNN-LT-ELPAGLLNGLENLDTLLLQENSLY 185

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 53/248 (21%), Positives = 86/248 (34%), Gaps = 50/248 (20%)

Query: 220 NKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNL 279
           +K+ S +E+   NC   + + L        T+L LS+N                      
Sbjct: 7   SKVASHLEV---NCDKRNLTALPPDLPKDTTILHLSENLLYT--FSLATL-------MPY 54

Query: 280 TSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLN 339
           T L  L LD     + +         L  L LS+N LQ ++       L +++ LD+S N
Sbjct: 55  TRLTQLNLDRAEL-TKLQVDG-TLPVLGTLDLSHNQLQ-SLPL-LGQTLPALTVLDVSFN 110

Query: 340 MGIEGRIPRSM-ASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGH 398
             +   +P      L  L+ L L+G                   N L++L      +   
Sbjct: 111 -RLT-SLPLGALRGLGELQELYLKG-------------------NELKTL---PPGLLTP 146

Query: 399 LTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKL 458
                     +  L  ANN++  L    L  L  L  L + +N L  T+    F +   L
Sbjct: 147 TP-------KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSH-LL 197

Query: 459 SWFRVDGN 466
            +  + GN
Sbjct: 198 PFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 38/163 (23%), Positives = 58/163 (35%), Gaps = 16/163 (9%)

Query: 506 LQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMS 565
              L+L  + +            ++L  L+L + ++   +        L  L +  N + 
Sbjct: 33  TTILHLSENLLYTFSLATL-MPYTRLTQLNLDRAELTK-LQVDGTLPVLGTLDLSHNQLQ 90

Query: 566 GPLPLI---SSNLVFLDLSNNLFSGSISP--FLCYRINETKSLNALQLNDNYLNGELPDC 620
             LPL+      L  LD+S N  + S+               L  L L  N L    P  
Sbjct: 91  S-LPLLGQTLPALTVLDVSFNRLT-SLPLGAL-----RGLGELQELYLKGNELKTLPPGL 143

Query: 621 WMSYQNLKTLKLSNNKFTGNLPYSM-GSLTSLVWLHLGENRLS 662
                 L+ L L+NN  T  LP  +   L +L  L L EN L 
Sbjct: 144 LTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY 185

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.8 bits (114), Expect = 7e-06
 Identities = 41/147 (27%), Positives = 61/147 (41%), Gaps = 8/147 (5%)

Query: 602 SLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRL 661
               L L++N L        M Y  L  L L   + T  L    G+L  L  L L  N+L
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLSHNQL 89

Query: 662 SGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCD- 720
             ++ +  +   AL  LDV  N    ++P         +  L L+ N+    LP GL   
Sbjct: 90  Q-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKT-LPPGLLTP 146

Query: 721 LAFLQILDIADNNLSGAIPNCI-NNLT 746
              L+ L +A+NNL+  +P  + N L 
Sbjct: 147 TPKLEKLSLANNNLT-ELPAGLLNGLE 172

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 42/209 (20%), Positives = 74/209 (35%), Gaps = 38/209 (18%)

Query: 431 STLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPF----QLVALG 486
               +L +++N L  T S       T+L+   +D  +LT       +        L  L 
Sbjct: 31  KDTTILHLSENLL-YTFSLATLMPYTRLTQLNLDRAELTK------LQVDGTLPVLGTLD 83

Query: 487 LRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIP 546
           L +  + S  PL   +   L  L +  + ++ + P+  L+   +L+ L L  N++    P
Sbjct: 84  LSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSL-PLGALRGLGELQELYLKGNELKTLPP 141

Query: 547 NLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNAL 606
            L   T                      L  L L+NN  +  +   L   +    +L+ L
Sbjct: 142 GL--LTPT------------------PKLEKLSLANNNLT-ELPAGLLNGLE---NLDTL 177

Query: 607 QLNDNYLNGELPDCWMSYQNLKTLKLSNN 635
            L +N L   +P  +     L    L  N
Sbjct: 178 LLQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 83.9 bits (207), Expect = 8e-17
 Identities = 55/349 (15%), Positives = 107/349 (30%), Gaps = 54/349 (15%)

Query: 122 LKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNL---------- 171
           +   S L L+  +     +P        +  L +++  +   +P    +L          
Sbjct: 58  INQFSELQLNRLNLS--SLPDNLPP--QITVLEITQNAL-ISLPELPASLEYLDACDNRL 112

Query: 172 -------SNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPS 224
                  ++L+ LD+ +N L  +         + LE+++  +  L+       +     S
Sbjct: 113 STLPELPASLKHLDVDNNQLTMLP-----ELPALLEYINADNNQLTM------LPELPTS 161

Query: 225 LVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRH 284
           L  L + N QL            SL  LD+S N  +    P+       R   +  +   
Sbjct: 162 LEVLSVRNNQLTFLP----ELPESLEALDVSTNLLESL--PAV----PVRNHHSEETEIF 211

Query: 285 LGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSL---------QGTIDSEALGNLTSISWLD 335
                N   + IP  +        + L +N L         Q T   +  G     S  D
Sbjct: 212 FRCRENRI-THIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSD 270

Query: 336 LSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSI 395
              N           A     K  ++  +  + E  E  + FS  +    +++  R+ S 
Sbjct: 271 GQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSG 330

Query: 396 YGH-LTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKL 443
           +   +   L +      L   + ++     ES      L    +    L
Sbjct: 331 FREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLL 379

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 82.7 bits (204), Expect = 2e-16
 Identities = 49/222 (22%), Positives = 85/222 (38%), Gaps = 30/222 (13%)

Query: 529 SQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGS 588
           +Q   L L +  +   +P+      + +L +  N +   LP + ++L +LD  +N  S +
Sbjct: 59  NQFSELQLNRLNLSS-LPD-NLPPQITVLEITQNALI-SLPELPASLEYLDACDNRLS-T 114

Query: 589 ISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSL 648
           +            SL  L +++N L   LP+       L+ +   NN+ T  LP    SL
Sbjct: 115 LPELPA-------SLKHLDVDNNQLT-MLPELP---ALLEYINADNNQLT-MLPELPTSL 162

Query: 649 TSLVWLHLGENRLSGNILVSLKNC-TALESLDVGENEFVGNIPTWIGERFS---RMVVLI 704
             L         +  N L  L     +LE+LDV  N    ++P             +   
Sbjct: 163 EVL--------SVRNNQLTFLPELPESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFR 213

Query: 705 LRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLT 746
            R N+    +P  +  L     + + DN LS  I   ++  T
Sbjct: 214 CRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 82.3 bits (203), Expect = 3e-16
 Identities = 53/277 (19%), Positives = 107/277 (38%), Gaps = 36/277 (12%)

Query: 410 VTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLT 469
           ++ +   N+I G   +            +     N  +S +    + + S  +++   L+
Sbjct: 13  LSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS 72

Query: 470 LGVKHDWIPPF---QLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLK 526
                  +P     Q+  L +    + S  P        L++L   ++ +S +      +
Sbjct: 73  S------LPDNLPPQITVLEITQNALIS-LPELP---ASLEYLDACDNRLSTL-----PE 117

Query: 527 SASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFS 586
             + LK LD+  NQ+   +P L     L  ++  +N ++  LP + ++L  L + NN  +
Sbjct: 118 LPASLKHLDVDNNQLTM-LPEL--PALLEYINADNNQLTM-LPELPTSLEVLSVRNNQLT 173

Query: 587 GSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKT----LKLSNNKFTGNLP 642
             +           +SL AL ++ N L   LP   +   + +      +   N+ T ++P
Sbjct: 174 -FLPELP-------ESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIP 223

Query: 643 YSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLD 679
            ++ SL     + L +N LS  I  SL   TA     
Sbjct: 224 ENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYH 260

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 81.9 bits (202), Expect = 3e-16
 Identities = 59/319 (18%), Positives = 104/319 (32%), Gaps = 61/319 (19%)

Query: 567 PLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLN---GELPDCWMS 623
            + L  +N     LS N F  +IS       +         L     N     L +C + 
Sbjct: 2   SIMLPINNN--FSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLI- 58

Query: 624 YQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGEN 683
                 L+L+    + +LP ++     +  L + +N L  ++     +   LE LD  +N
Sbjct: 59  -NQFSELQLNRLNLS-SLPDNLPP--QITVLEITQNALI-SLPELPAS---LEYLDACDN 110

Query: 684 EFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCIN 743
                  + + E  + +  L + +N+    LP     L   + ++  +N L+  +P    
Sbjct: 111 RL-----STLPELPASLKHLDVDNNQLTM-LPELPALL---EYINADNNQLT-MLPELPT 160

Query: 744 NLTGM-VTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRN 802
           +L  + V     T        LP                      E   +L   +D+S N
Sbjct: 161 SLEVLSVRNNQLTF-------LP----------------------ELPESL-EALDVSTN 190

Query: 803 NFSGKIPLEVTNLKALQS----LNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPE 858
                +P         +          N  T  IPE+I  +    +I    N LS  I E
Sbjct: 191 LLES-LPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE 248

Query: 859 SMSSLTFLNHLNLSNNNLT 877
           S+S  T     +      +
Sbjct: 249 SLSQQTAQPDYHGPRIYFS 267

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 77.3 bits (190), Expect = 1e-14
 Identities = 53/275 (19%), Positives = 106/275 (38%), Gaps = 29/275 (10%)

Query: 394 SIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFA 453
             Y        +++         N  V L+ E L  ++    L++N   L+ +L      
Sbjct: 24  GTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNLS-SLPDNLPP 80

Query: 454 NLTKLSWFRVDGNKLTLGVKHDWIPPF--QLVALGLRNCYVGSRFPLWLYSQKHLQFLYL 511
            +T L    +  N L        +P     L  L   +  + S  P        L+ L +
Sbjct: 81  QITVLE---ITQNALIS------LPELPASLEYLDACDNRL-STLPELP---ASLKHLDV 127

Query: 512 VNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLI 571
            N+ ++ + P    +  + L++++   NQ+   +P L   T L +LSV +N ++  LP +
Sbjct: 128 DNNQLTML-P----ELPALLEYINADNNQLTM-LPEL--PTSLEVLSVRNNQLTF-LPEL 178

Query: 572 SSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLK 631
             +L  LD+S NL   S+        +  ++    +  +N +   +P+  +S     T+ 
Sbjct: 179 PESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTII 236

Query: 632 LSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNIL 666
           L +N  +  +  S+   T+    H      S +  
Sbjct: 237 LEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDG 271

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 74.6 bits (183), Expect = 6e-14
 Identities = 49/295 (16%), Positives = 98/295 (33%), Gaps = 58/295 (19%)

Query: 184 LLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLAT 243
           +L ++N + LS  SF   +     +   A+D      K            +    SLL  
Sbjct: 4   MLPINNNFSLSQNSFYNTISGTYADYFSAWD------KWEKQALPGENRNEA--VSLLKE 55

Query: 244 ANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNL--------------TSLRHLGLDS 289
              +  + L L+        +P      +P  +  L               SL +L    
Sbjct: 56  CLINQFSELQLNRLNLSS--LPDN----LPPQITVLEITQNALISLPELPASLEYLDACD 109

Query: 290 NHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRS 349
           N  + ++P        L++L + NN L      E    L    +++   N     ++   
Sbjct: 110 NRLS-TLPE---LPASLKHLDVDNNQLTML--PELPALLE---YINADNN-----QLTML 155

Query: 350 MASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKN- 408
                +L+ L++R   L   + E+ +         LE+LD+ ++ +   L     +  + 
Sbjct: 156 PELPTSLEVLSVRNNQL-TFLPELPE--------SLEALDVSTNLL-ESLPAVPVRNHHS 205

Query: 409 ---IVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSW 460
               +      N I  + PE++  L     + + DN L+ +      +  T    
Sbjct: 206 EETEIFFRCRENRITHI-PENILSLDPTCTIILEDNPLS-SRIRESLSQQTAQPD 258

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 74.6 bits (183), Expect = 6e-14
 Identities = 50/319 (15%), Positives = 94/319 (29%), Gaps = 68/319 (21%)

Query: 128 LDLSFNDFQGI--QIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLL 185
            +  +N   G        +           +R     ++   L  ++    L L+   L 
Sbjct: 15  QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNLS 72

Query: 186 YVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATAN 245
            + +    +    +  L++    L        +     SL  L   + +L          
Sbjct: 73  SLPD----NLPPQITVLEITQNALIS------LPELPASLEYLDACDNRLSTLP----EL 118

Query: 246 FSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIH 305
            +SL  LD+ +NQ     +P                L ++  D+N   + +P        
Sbjct: 119 PASLKHLDVDNNQLTM--LPE-----------LPALLEYINADNNQL-TMLPELP---TS 161

Query: 306 LEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVH 365
           LE LS+ NN L  T   E   +L     LD+S N  +E  +P       + +   +    
Sbjct: 162 LEVLSVRNNQL--TFLPELPESLE---ALDVSTN-LLE-SLPAVPVRNHHSEETEIF--- 211

Query: 366 LSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPE 425
                                    R + I  H+ + +       T+   +N +   I E
Sbjct: 212 ----------------------FRCRENRI-THIPENILSLDPTCTIILEDNPLSSRIRE 248

Query: 426 SLGQLSTLRVLRINDNKLN 444
           SL Q +            +
Sbjct: 249 SLSQQTAQPDYHGPRIYFS 267

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 61.1 bits (148), Expect = 1e-09
 Identities = 66/380 (17%), Positives = 125/380 (32%), Gaps = 56/380 (14%)

Query: 326 GNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGL 385
            N  S+S  +   N  I G      ++    +   L G + ++ +S + +    C+ N  
Sbjct: 8   NNNFSLS-QNSFYNT-ISGTYADYFSAWDKWEKQALPGENRNEAVSLLKE----CLINQF 61

Query: 386 ESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNG 445
             L L   ++   L D L     I  L+   N+++ L PE    L  L      DN+L+ 
Sbjct: 62  SELQLNRLNL-SSLPDNLPP--QITVLEITQNALISL-PELPASLEYLDA---CDNRLS- 113

Query: 446 TLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPF--QLVALGLRNCYVGSRFPLWLYSQ 503
           TL     A+L  L    VD N+LT       +P     L  +   N  +    P      
Sbjct: 114 TLPE-LPASLKHL---DVDNNQLT------MLPELPALLEYINADNNQLTM-LPELP--- 159

Query: 504 KHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIH------GPIPNLTEFTGLLIL 557
             L+ L + N+ ++ +           L+ LD+  N +           +  E    +  
Sbjct: 160 TSLEVLSVRNNQLTFLPE-----LPESLEALDVSTNLLESLPAVPVRNHHSEET--EIFF 212

Query: 558 SVYSNNMSG-PLPLIS-SNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNG 615
               N ++  P  ++S      + L +N     +S  +   +++  +         Y + 
Sbjct: 213 RCRENRITHIPENILSLDPTCTIILEDN----PLSSRIRESLSQQTAQPDYHGPRIYFSM 268

Query: 616 ELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTAL 675
                   ++ L       +  T   P +  S  S +W        +      L   +  
Sbjct: 269 SDGQQNTLHRPL------ADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDT 322

Query: 676 ESLDVGENEFVGNIPTWIGE 695
            S       F   +  W+ +
Sbjct: 323 VSARNTS-GFREQVAAWLEK 341

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 54.2 bits (130), Expect = 2e-07
 Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 26/123 (21%)

Query: 788 EDILNLVRMIDISRNNFSGKIPLEVTNLKAL-----------------QSLNFSYNSFTG 830
           +++   + +++I++N     +P    +L+ L                 + L+   N  T 
Sbjct: 76  DNLPPQITVLEITQNALI-SLPELPASLEYLDACDNRLSTLPELPASLKHLDVDNNQLT- 133

Query: 831 RIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSSTQLQSFD 890
            +PE       LE I+   NQL+  +PE  +SL     L++ NN LT        L++ D
Sbjct: 134 MLPELPA---LLEYINADNNQLT-MLPELPTSLE---VLSVRNNQLTFLPELPESLEALD 186

Query: 891 VSS 893
           VS+
Sbjct: 187 VST 189

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 81.0 bits (200), Expect = 2e-16
 Identities = 45/196 (22%), Positives = 68/196 (34%), Gaps = 35/196 (17%)

Query: 124 HLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNY 183
           + + LDLS N+   ++       + NL  L LS   +  +       + NL++LDLSSN 
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN- 98

Query: 184 LLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLAT 243
                               L +++    F        L +L  L L N  +      A 
Sbjct: 99  -------------------HLHTLD-EFLFS------DLQALEVLLLYNNHIVVVDRNAF 132

Query: 244 ANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRF 303
            + + L  L LS NQ  +   P  +     +    L  L  L L SN         L + 
Sbjct: 133 EDMAQLQKLYLSQNQISR--FPVELI----KDGNKLPKLMLLDLSSNKLKKLPLTDLQKL 186

Query: 304 IHL--EYLSLSNNSLQ 317
                  L L NN L+
Sbjct: 187 PAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 71.8 bits (176), Expect = 2e-13
 Identities = 44/177 (24%), Positives = 66/177 (37%), Gaps = 28/177 (15%)

Query: 199 LEHLDLRSVNLSK-----AFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLD 253
              LDL   NLS+              +L +L  L L++  L+  S  A     +L  LD
Sbjct: 41  TALLDLSHNNLSRLRAEWTPT------RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD 94

Query: 254 LSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSN 313
           LS N      +  ++F        +L +L  L L +NH      N       L+ L LS 
Sbjct: 95  LSSNHLHT--LDEFLF-------SDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ 145

Query: 314 NSLQGTIDSEA---LGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLS 367
           N +      E       L  +  LDLS N     ++P +   L  L +    G++L 
Sbjct: 146 NQIS-RFPVELIKDGNKLPKLMLLDLSSNK--LKKLPLTD--LQKLPAWVKNGLYLH 197

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 59.5 bits (144), Expect = 2e-09
 Identities = 31/155 (20%), Positives = 49/155 (31%), Gaps = 32/155 (20%)

Query: 121 DLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLS 180
            + +L YLDLS N    +     F  +  L  L L    I  +  +   +++ LQ L LS
Sbjct: 86  PVPNLRYLDLSSNHLHTLD-EFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLS 144

Query: 181 SNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSL 240
            N +                          +        NKLP L+ L L++ +L    L
Sbjct: 145 QNQISRFPV---------------------ELIKDG---NKLPKLMLLDLSSNKLKKLPL 180

Query: 241 LATANFSSLTV--LDLSDNQFD-----KWFIPSWV 268
                  +     L L +N  +           W 
Sbjct: 181 TDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQ 215

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 35/164 (21%), Positives = 51/164 (31%), Gaps = 24/164 (14%)

Query: 246 FSSLTVLDLSDNQFDKWFIPSWVFGP----------------IPRG-LQNLTSLRHLGLD 288
            S   +LDLS N   +     W                    I       + +LR+L L 
Sbjct: 38  PSYTALLDLSHNNLSR-LRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96

Query: 289 SNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLN--MGIEGRI 346
           SNH ++           LE L L NN +   +D  A  ++  +  L LS N        +
Sbjct: 97  SNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVEL 155

Query: 347 PRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDL 390
            +    L  L  L+L    L       L       +     L L
Sbjct: 156 IKDGNKLPKLMLLDLSSNKLK---KLPLTDLQKLPAWVKNGLYL 196

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.0 bits (122), Expect = 9e-07
 Identities = 34/167 (20%), Positives = 52/167 (31%), Gaps = 37/167 (22%)

Query: 504 KHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNN 563
            +L  L L ++ ++ I           L++LDL  N +H  +     F+ L         
Sbjct: 64  TNLHSLLLSHNHLNFI-SSEAFVPVPNLRYLDLSSNHLHT-LDEFL-FSDL--------- 111

Query: 564 MSGPLPLISSNLVFLDLSNNLFSGSISP--FLCYRINETKSLNALQLNDNYLNGELP--- 618
                      L  L L NN     +    F      +   L  L L+ N ++   P   
Sbjct: 112 ---------QALEVLLLYNNHIV-VVDRNAF-----EDMAQLQKLYLSQNQIS-RFPVEL 155

Query: 619 -DCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGN 664
                    L  L LS+NK        +  L + V   L    L  N
Sbjct: 156 IKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL---YLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 40/168 (23%), Positives = 70/168 (41%), Gaps = 10/168 (5%)

Query: 571 ISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTL 630
           + S    LDLS+N  S  +            +L++L L+ N+LN    + ++   NL+ L
Sbjct: 37  LPSYTALLDLSHNNLS-RLRAEWTPT--RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYL 93

Query: 631 KLSNNKFTGNLPYSM-GSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNI 689
            LS+N     L   +   L +L  L L  N +      + ++   L+ L + +N+     
Sbjct: 94  DLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RF 151

Query: 690 PTWI---GERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIA-DNN 733
           P  +   G +  ++++L L SNK      T L  L       +   NN
Sbjct: 152 PVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 22/137 (16%), Positives = 43/137 (31%), Gaps = 23/137 (16%)

Query: 407 KNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGN 466
            N+  LD ++N +  L       L  L VL + +N +   +    F ++ +L    +  N
Sbjct: 88  PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQN 146

Query: 467 KLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLK 526
           +++        P   +                       L  L L ++ +  +      K
Sbjct: 147 QIS------RFPVELIKDGN---------------KLPKLMLLDLSSNKLKKLPLTDLQK 185

Query: 527 -SASQLKFLDLGQNQIH 542
             A     L L  N + 
Sbjct: 186 LPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.9 bits (101), Expect = 4e-04
 Identities = 31/132 (23%), Positives = 51/132 (38%), Gaps = 27/132 (20%)

Query: 788 EDILNLVRMIDISRNNFSGKIPLEVT--NLKALQSLNFSYNSFTGRIPESIGV---MRSL 842
           + + +   ++D+S NN S ++  E T   L  L SL  S+N     I         + +L
Sbjct: 35  QSLPSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISS--EAFVPVPNL 90

Query: 843 ESIDFSANQLSGEIPESM-SSLTFLNHLNLSNNNLTGKIP---------------SSTQL 886
             +D S+N L   + E + S L  L  L L NN++   +                S  Q+
Sbjct: 91  RYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQI 148

Query: 887 QSFDVSSFAGND 898
             F V      +
Sbjct: 149 SRFPVELIKDGN 160

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 74.2 bits (183), Expect = 3e-15
 Identities = 22/137 (16%), Positives = 43/137 (31%), Gaps = 9/137 (6%)

Query: 122 LKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSS 181
             ++  L ++               + NL  L +    +      +L  L++L  LD+S 
Sbjct: 65  AHNIKDLTINNIHATNYN---PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121

Query: 182 NYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLL 241
           +          ++ L  +  +DL           L     LP L  L +    +H +  +
Sbjct: 122 SAHDDSI-LTKINTLPKVNSIDLSYNGAITDIMPL---KTLPELKSLNIQFDGVHDYRGI 177

Query: 242 ATANFSSLTVLDLSDNQ 258
              +F  L  L      
Sbjct: 178 --EDFPKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 73.5 bits (181), Expect = 5e-15
 Identities = 29/218 (13%), Positives = 68/218 (31%), Gaps = 48/218 (22%)

Query: 122 LKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSS 181
            K      L  +    I        M +L Y+ L+   +  +    +    N++ L +++
Sbjct: 22  FKAYLNGLLGQSSTANITE----AQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINN 75

Query: 182 NYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLL 241
            +          +  + +                      L +L  LR+    +    + 
Sbjct: 76  IH---------ATNYNPIS--------------------GLSNLERLRIMGKDVTSDKIP 106

Query: 242 ATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLY 301
             +  +SLT+LD+S +  D   +           +  L  +  + L  N   + I   L 
Sbjct: 107 NLSGLTSLTLLDISHSAHDDSILT---------KINTLPKVNSIDLSYNGAITDIMP-LK 156

Query: 302 RFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLN 339
               L+ L++  + +    D   + +   ++ L     
Sbjct: 157 TLPELKSLNIQFDGVH---DYRGIEDFPKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 71.9 bits (177), Expect = 2e-14
 Identities = 33/178 (18%), Positives = 62/178 (34%), Gaps = 22/178 (12%)

Query: 118 SLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFL 177
           +   +  L+Y+ L+  +   +          N++ L ++        P  +  LSNL+ L
Sbjct: 39  TEAQMNSLTYITLANINVTDLT---GIEYAHNIKDLTINNIHATNYNP--ISGLSNLERL 93

Query: 178 DLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLA-NCQLH 236
            +     +  D    LSGL+ L  LD+       +   L   N LP +  + L+ N  + 
Sbjct: 94  RIMGKD-VTSDKIPNLSGLTSLTLLDISHSAHDDSI--LTKINTLPKVNSIDLSYNGAIT 150

Query: 237 HFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNS 294
               L       L  L++  +    +           RG+++   L  L   S     
Sbjct: 151 DIMPL--KTLPELKSLNIQFDGVHDY-----------RGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 63.8 bits (156), Expect = 1e-11
 Identities = 32/206 (15%), Positives = 68/206 (33%), Gaps = 32/206 (15%)

Query: 170 NLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTN--KLPSLVE 227
                    L  +    +      + ++ L ++ L ++N++       +T      ++ +
Sbjct: 21  TFKAYLNGLLGQSSTANITE----AQMNSLTYITLANINVTD------LTGIEYAHNIKD 70

Query: 228 LRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGL 287
           L + N    +++ ++    S+L  L +         IP+         L  LTSL  L +
Sbjct: 71  LTINNIHATNYNPIS--GLSNLERLRIMGKDVTSDKIPN---------LSGLTSLTLLDI 119

Query: 288 DSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIP 347
             +  + SI   +     +  + LS N     I    L  L  +  L++  + G+     
Sbjct: 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDI--MPLKTLPELKSLNIQFD-GVHDYRG 176

Query: 348 RSMASLCNLKSLNLRGVHLSQEISEI 373
             +     L  L        Q I   
Sbjct: 177 --IEDFPKLNQLYAFS----QTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 63.4 bits (155), Expect = 2e-11
 Identities = 27/181 (14%), Positives = 60/181 (33%), Gaps = 32/181 (17%)

Query: 504 KHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNN 563
             L ++ L N +++D+  I +      +K L +          N    +GL         
Sbjct: 44  NSLTYITLANINVTDLTGIEYAH---NIKDLTINNIHAT----NYNPISGL--------- 87

Query: 564 MSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMS 623
                    SNL  L +     +    P L    +   SL  L ++ +  +  +     +
Sbjct: 88  ---------SNLERLRIMGKDVTSDKIPNL----SGLTSLTLLDISHSAHDDSILTKINT 134

Query: 624 YQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGEN 683
              + ++ LS N    ++   + +L  L  L++  + +       +++   L  L     
Sbjct: 135 LPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQ 191

Query: 684 E 684
            
Sbjct: 192 T 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 62.7 bits (153), Expect = 3e-11
 Identities = 33/209 (15%), Positives = 76/209 (36%), Gaps = 27/209 (12%)

Query: 534 LDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLIS-SNLVFLDLSNNLFSGSISPF 592
           L   Q+ ++ P      +   L+      + +  +     ++L ++ L+N   +  ++  
Sbjct: 8   LKASQDNVNIPDSTFKAYLNGLL----GQSSTANITEAQMNSLTYITLANINVT-DLTG- 61

Query: 593 LCYRINETKSLNALQLNDNYLN-----GELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGS 647
               I    ++  L +N+ +         L        NL+ L++     T +   ++  
Sbjct: 62  ----IEYAHNIKDLTINNIHATNYNPISGLS-------NLERLRIMGKDVTSDKIPNLSG 110

Query: 648 LTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRS 707
           LTSL  L +  +    +IL  +     + S+D+  N  + +I     +    +  L ++ 
Sbjct: 111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPL--KTLPELKSLNIQF 168

Query: 708 NKFHGPLPTGLCDLAFLQILDIADNNLSG 736
           +  H     G+ D   L  L      + G
Sbjct: 169 DGVHD--YRGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.5 bits (137), Expect = 4e-09
 Identities = 19/102 (18%), Positives = 42/102 (41%), Gaps = 5/102 (4%)

Query: 795 RMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSG 854
           + + I+  + +   P+    L  L+ L       T     ++  + SL  +D S +    
Sbjct: 69  KDLTINNIHATNYNPIS--GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126

Query: 855 EIPESMSSLTFLNHLNLSNNNLTGKIP---SSTQLQSFDVSS 893
            I   +++L  +N ++LS N     I    +  +L+S ++  
Sbjct: 127 SILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQF 168

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 22/163 (13%), Positives = 57/163 (34%), Gaps = 20/163 (12%)

Query: 309 LSLSNNSLQGTIDSEALGNLTSISWLDLSLN--MGIEGRIPRSMASLCNLKSLNLRGVHL 366
             L  +S      +     + S++++ L+      + G     +    N+K L +  +H 
Sbjct: 28  GLLGQSS----TANITEAQMNSLTYITLANINVTDLTG-----IEYAHNIKDLTINNIHA 78

Query: 367 SQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPES 426
           +       +  SG  +  LE L +    +       L    ++  LD ++++    I   
Sbjct: 79  TN-----YNPISGLSN--LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK 131

Query: 427 LGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLT 469
           +  L  +  + ++ N     +  +    L +L    +  + + 
Sbjct: 132 INTLPKVNSIDLSYNGAITDIMPL--KTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.4 bits (129), Expect = 5e-08
 Identities = 30/253 (11%), Positives = 69/253 (27%), Gaps = 78/253 (30%)

Query: 626 NLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEF 685
             K         +     +   + SL ++ L    ++   L  ++    ++ L +     
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTD--LTGIEYAHNIKDLTINNIH- 77

Query: 686 VGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNL 745
             N                             +  L+ L+ L I   +++      ++ L
Sbjct: 78  ATNY--------------------------NPISGLSNLERLRIMGKDVTSDKIPNLSGL 111

Query: 746 TGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFS 805
           T                                             +L  ++DIS +   
Sbjct: 112 T---------------------------------------------SL-TLLDISHSAHD 125

Query: 806 GKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTF 865
             I  ++  L  + S++ SYN     I   +  +  L+S++   + +       +     
Sbjct: 126 DSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHD--YRGIEDFPK 182

Query: 866 LNHLNLSNNNLTG 878
           LN L   +  + G
Sbjct: 183 LNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 52.7 bits (127), Expect = 8e-08
 Identities = 22/112 (19%), Positives = 42/112 (37%), Gaps = 5/112 (4%)

Query: 786 DYEDILNLV--RMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLE 843
           +Y  I  L     + I   + +      ++ L +L  L+ S+++    I   I  +  + 
Sbjct: 80  NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVN 139

Query: 844 SIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSS--TQLQSFDVSS 893
           SID S N    +I   + +L  L  LN+  + +          +L      S
Sbjct: 140 SIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 19/95 (20%), Positives = 39/95 (41%), Gaps = 7/95 (7%)

Query: 117 PSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSR-TRIGGMIPHHLGNLSNLQ 175
           P+L  L  L+ LD+S +      +     ++  +  ++LS    I  ++P  L  L  L+
Sbjct: 106 PNLSGLTSLTLLDISHSAHDDSILT-KINTLPKVNSIDLSYNGAITDIMP--LKTLPELK 162

Query: 176 FLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLS 210
            L++  +    V ++  +     L  L   S  + 
Sbjct: 163 SLNIQFD---GVHDYRGIEDFPKLNQLYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.9 bits (107), Expect = 3e-05
 Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 4/77 (5%)

Query: 106 IRRTALVGKINPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIP 165
           I  +A    I   +  L  ++ +DLS+N    I       ++  L+ LN+    +     
Sbjct: 119 ISHSAHDDSILTKINTLPKVNSIDLSYN--GAITDIMPLKTLPELKSLNIQFDGVHDYRG 176

Query: 166 HHLGNLSNLQFLDLSSN 182
             + +   L  L   S 
Sbjct: 177 --IEDFPKLNQLYAFSQ 191

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 75.4 bits (186), Expect = 4e-15
 Identities = 40/258 (15%), Positives = 85/258 (32%), Gaps = 33/258 (12%)

Query: 104 EAIRRTALVGKINPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGM 163
           E+I+R   + ++ P    L +    +L       +        +  ++  N   + I  +
Sbjct: 1   ESIQRPTPINQVFP-DPGLANAVKQNLGKQSVTDLV---SQKELSGVQNFNGDNSNIQSL 56

Query: 164 IPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLP 223
               +   +NL+ L LS N +  +     L  L+ LE L +    L       +      
Sbjct: 57  AG--MQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNRLKN-----LNGIPSA 106

Query: 224 SLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLR 283
            L  L L N +L     L   +  +L +L + +N+                 L  L+ L 
Sbjct: 107 CLSRLFLDNNELRDTDSL--IHLKNLEILSIRNNKLKS-----------IVMLGFLSKLE 153

Query: 284 HLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIE 343
            L L  N   ++    L R   + ++ L+         +E +     +   +   +    
Sbjct: 154 VLDLHGNEI-TNTGG-LTRLKKVNWIDLTGQ----KCVNEPVKYQPELYITNTVKDPDGR 207

Query: 344 GRIPRSMASLCNLKSLNL 361
              P  +++  +     +
Sbjct: 208 WISPYYISNGGSYVDGCV 225

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 73.9 bits (182), Expect = 1e-14
 Identities = 39/219 (17%), Positives = 71/219 (32%), Gaps = 28/219 (12%)

Query: 117 PSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQF 176
            S  +L  +   +   ++ Q +          NL+ L+LS  +I  + P  L +L+ L+ 
Sbjct: 35  VSQKELSGVQNFNGDNSNIQSLA---GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEE 89

Query: 177 LDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLH 236
           L ++ N L  ++    +     L  L L +  L            L +L  L + N +L 
Sbjct: 90  LSVNRNRLKNLNG---IPSAC-LSRLFLDNNELRD----TDSLIHLKNLEILSIRNNKLK 141

Query: 237 HFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSI 296
              +L     S L VLDL  N+                GL  L  +  + L      +  
Sbjct: 142 SIVML--GFLSKLEVLDLHGNEITNT-----------GGLTRLKKVNWIDLTGQKCVNEP 188

Query: 297 PNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTS--ISW 333
             +         +   +            G+     + W
Sbjct: 189 VKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLW 227

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 65.8 bits (161), Expect = 7e-12
 Identities = 38/183 (20%), Positives = 65/183 (35%), Gaps = 14/183 (7%)

Query: 504 KHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNN 563
             +Q     NS+I  +  ++F      LK L L  NQI   +  L + T L  LSV  N 
Sbjct: 41  SGVQNFNGDNSNIQSLAGMQFFT---NLKELHLSHNQISD-LSPLKDLTKLEELSVNRNR 96

Query: 564 MSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMS 623
           +     + S+ L  L L NN             +   K+L  L + +N L   +      
Sbjct: 97  LKNLNGIPSACLSRLFLDNNELR-DTDS-----LIHLKNLEILSIRNNKLK-SIVML-GF 148

Query: 624 YQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGEN 683
              L+ L L  N+ T     +   L  + W+ L   +     +          ++   + 
Sbjct: 149 LSKLEVLDLHGNEITNTGGLT--RLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDG 206

Query: 684 EFV 686
            ++
Sbjct: 207 RWI 209

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 65.4 bits (160), Expect = 9e-12
 Identities = 36/201 (17%), Positives = 73/201 (36%), Gaps = 33/201 (16%)

Query: 244 ANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRF 303
              ++    +L                      + L+ +++   D+++   S+   +  F
Sbjct: 16  PGLANAVKQNLGKQSVTDL-----------VSQKELSGVQNFNGDNSNI-QSLAG-MQFF 62

Query: 304 IHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRG 363
            +L+ L LS+N +    D   L +LT +  L ++ N     R+     +L  + S  L  
Sbjct: 63  TNLKELHLSHNQIS---DLSPLKDLTKLEELSVNRN-----RL----KNLNGIPSACLSR 110

Query: 364 VHLS-QEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGL 422
           + L   E+ +  D      +  LE L +R++ +       LG    +  LD   N I   
Sbjct: 111 LFLDNNELRDT-DSLIHLKN--LEILSIRNNKL--KSIVMLGFLSKLEVLDLHGNEITNT 165

Query: 423 IPESLGQLSTLRVLRINDNKL 443
               L +L  +  + +   K 
Sbjct: 166 --GGLTRLKKVNWIDLTGQKC 184

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 63.5 bits (155), Expect = 4e-11
 Identities = 42/223 (18%), Positives = 77/223 (34%), Gaps = 31/223 (13%)

Query: 221 KLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLT 280
            L + V+  L    +           S +   +  ++                 G+Q  T
Sbjct: 17  GLANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNIQS-----------LAGMQFFT 63

Query: 281 SLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNM 340
           +L+ L L  N   S +   L     LE LS++ N L+  ++      L+    L L  N 
Sbjct: 64  NLKELHLSHNQI-SDLSP-LKDLTKLEELSVNRNRLK-NLNGIPSACLSR---LFLDNNE 117

Query: 341 GIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLT 400
             +     S+  L NL+ L++R    + ++  I  +        LE LDL  + I     
Sbjct: 118 LRD---TDSLIHLKNLEILSIR----NNKLKSI-VMLGFLSK--LEVLDLHGNEITNT-- 165

Query: 401 DQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKL 443
             L + K +  +D      V    +   +L     ++  D + 
Sbjct: 166 GGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRW 208

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 60.0 bits (146), Expect = 7e-10
 Identities = 41/269 (15%), Positives = 81/269 (30%), Gaps = 47/269 (17%)

Query: 416 NNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHD 475
              I  + P     L+      +    +      +    L+ +  F  D + +       
Sbjct: 6   PTPINQVFP--DPGLANAVKQNLGKQSVT---DLVSQKELSGVQNFNGDNSNIQ------ 54

Query: 476 WIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLD 535
            +   Q                       +L+ L+L ++ ISD+ P++ L     L+ L 
Sbjct: 55  SLAGMQ--------------------FFTNLKELHLSHNQISDLSPLKDLTK---LEELS 91

Query: 536 LGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLIS-SNLVFLDLSNNLFSGSISPFLC 594
           + +N++   +  +     L  L + +N +     LI   NL  L + NN    SI     
Sbjct: 92  VNRNRLKN-LNGI-PSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLK-SIVM--- 145

Query: 595 YRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWL 654
             +     L  L L+ N +        +    +  + L+  K           L     +
Sbjct: 146 --LGFLSKLEVLDLHGNEITNTGGLTRLK--KVNWIDLTGQKCVNEPVKYQPELYITNTV 201

Query: 655 HLGENRLSGNILVSLKNCTALESLDVGEN 683
              + R      +S  N  +     V   
Sbjct: 202 KDPDGRWISPYYIS--NGGSYVDGCVLWE 228

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 56.6 bits (137), Expect = 9e-09
 Identities = 52/340 (15%), Positives = 93/340 (27%), Gaps = 99/340 (29%)

Query: 300 LYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSL 359
                +    +L   S+    D  +   L+ +   +   +                    
Sbjct: 15  DPGLANAVKQNLGKQSVT---DLVSQKELSGVQNFNGDNS-------------------- 51

Query: 360 NLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSI 419
                     I  +          G++                     N+  L  ++N I
Sbjct: 52  ---------NIQSL---------AGMQFF------------------TNLKELHLSHNQI 75

Query: 420 VGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPP 479
             L    L  L+ L  L +N N+L   L+ I  A L++L    +D N+L           
Sbjct: 76  SDL--SPLKDLTKLEELSVNRNRLK-NLNGIPSACLSRLF---LDNNELRD------TDS 123

Query: 480 FQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQN 539
                               L   K+L+ L + N+ +  I  + FL     L+ LDL  N
Sbjct: 124 --------------------LIHLKNLEILSIRNNKLKSIVMLGFLSK---LEVLDLHGN 160

Query: 540 QIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINE 599
           +I      LT    +  + +               L   +   +     ISP   Y I+ 
Sbjct: 161 EITN-TGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISP---YYISN 216

Query: 600 TKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTG 639
             S     +    L     +    +     +  +   F G
Sbjct: 217 GGSYVDGCVLWE-LPVYTDEVSYKFSEYINVGETEAIFDG 255

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.2 bits (97), Expect = 8e-04
 Identities = 39/239 (16%), Positives = 81/239 (33%), Gaps = 42/239 (17%)

Query: 647 SLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILR 706
            L + V  +LG+  ++   LVS K  + +++ +   +  + ++     + F+ +  L L 
Sbjct: 17  GLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSN-IQSLAGM--QFFTNLKELHLS 71

Query: 707 SNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPI 766
            N+      + L DL  L+ L +  N L       +N +                L L  
Sbjct: 72  HNQISDL--SPLKDLTKLEELSVNRNRLK-----NLNGIPSAC---------LSRLFL-- 113

Query: 767 DVGVILVEKASVVSKGEMVDYEDILNLV--RMIDISRNNFSGKIPLEVTNLKALQSLNFS 824
                           E+ D + +++L    ++ I  N     + L    L  L+ L+  
Sbjct: 114 -------------DNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLG--FLSKLEVLDLH 158

Query: 825 YNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSS 883
            N  T      +  ++ +  ID +  +   E  +    L   N +   +         S
Sbjct: 159 GNEITN--TGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYIS 215

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 75.5 bits (186), Expect = 1e-14
 Identities = 52/340 (15%), Positives = 91/340 (26%), Gaps = 68/340 (20%)

Query: 244 ANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFN----SSIPNW 299
           A FS +    L  +              +   L    S++ + L  N         +   
Sbjct: 2   ARFS-IEGKSLKLDAITTEDEK-----SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSEN 55

Query: 300 LYRFIHLEYLSLSNNSLQGTID---------SEALGNLTSISWLDLSLN-MGIEG--RIP 347
           +     LE    S+       D          +AL     +  + LS N  G      + 
Sbjct: 56  IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLI 115

Query: 348 RSMASLCNLKSLNLR--------GVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYG-- 397
             ++    L+ L L         G  +++ + E+        +  L S+    + +    
Sbjct: 116 DFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS 175

Query: 398 --HLTDQLGQFKNIVTLDFANNSI-----VGLIPESLGQLSTLRVLRINDNKLNGTLSAI 450
                      + + T+    N I       L+ E L     L+VL + DN     L + 
Sbjct: 176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF-THLGSS 234

Query: 451 HFA----NLTKLSWFRVDGNKLT-LGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKH 505
             A    +   L    ++   L+  G           V                      
Sbjct: 235 ALAIALKSWPNLRELGLNDCLLSARGAAA--------VVDAFSKL-----------ENIG 275

Query: 506 LQFLYLVNSSISDIFPIRFLKS----ASQLKFLDLGQNQI 541
           LQ L L  + I                  L FL+L  N+ 
Sbjct: 276 LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 74.0 bits (182), Expect = 5e-14
 Identities = 63/327 (19%), Positives = 108/327 (33%), Gaps = 55/327 (16%)

Query: 118 SLLDLKHLSYLDLSFNDF--QGIQ-IPRFFGSMGNLRYLNLSRTRIGGMIPHH------- 167
            LL+   +  + LS N    +  + +     S  +L     S    G +           
Sbjct: 27  VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLL 86

Query: 168 ---LGNLSNLQFLDLSSNYL-----LYVDNFWWLSGLSFLEHLDLRSVNLS--------- 210
              L     L  + LS N         + +F  LS  + LEHL L +  L          
Sbjct: 87  LQALLKCPKLHTVRLSDNAFGPTAQEPLIDF--LSKHTPLEHLYLHNNGLGPQAGAKIAR 144

Query: 211 --KAFDWLMVTNKLPSLVELRLANCQLHHFS--LLATA--NFSSLTVLDLSDNQFDKWFI 264
             +           P L  +     +L + S    A    +   L  + +  N       
Sbjct: 145 ALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIR---- 200

Query: 265 PSWVFGPIPRGLQNLTSLRHLGLDSNHFN----SSIPNWLYRFIHLEYLSLSNNSL--QG 318
           P  +   +  GL     L+ L L  N F     S++   L  + +L  L L++  L  +G
Sbjct: 201 PEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG 260

Query: 319 TID-SEALGNL--TSISWLDLSLN-MGIEG--RIPRSMAS-LCNLKSLNLRGVHLSQE-- 369
                +A   L    +  L L  N + ++    +   +   + +L  L L G   S+E  
Sbjct: 261 AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320

Query: 370 -ISEILDIFSGCVSNGLESLDLRSDSI 395
            + EI ++FS      L+ LD   +  
Sbjct: 321 VVDEIREVFSTRGRGELDELDDMEELT 347

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 74.0 bits (182), Expect = 6e-14
 Identities = 54/345 (15%), Positives = 101/345 (29%), Gaps = 78/345 (22%)

Query: 147 MGN--LRYLNLSRTRIG--GMIPH--HLGNLSNLQFLDLSSNYL-----LYVDNFWWLSG 195
           M    +   +L    I           L    +++ + LS N +      ++     ++ 
Sbjct: 1   MARFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSEN--IAS 58

Query: 196 LSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATA--NFSSLTVLD 253
              LE  +   +                     R+ +       LL  A      L  + 
Sbjct: 59  KKDLEIAEFSDIFTG------------------RVKDEIPEALRLLLQALLKCPKLHTVR 100

Query: 254 LSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHF-------------NSSIPNWL 300
           LSDN F           P+   L   T L HL L +N                 ++    
Sbjct: 101 LSDNAFGPTAQE-----PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKA 155

Query: 301 YRFIHLEYLSLSNNSLQ--GTID-SEALGNLTSISWLDLSLN----MGIEGRIPRSMASL 353
                L  +    N L+     + ++   +   +  + +  N     GIE  +   +A  
Sbjct: 156 KNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC 215

Query: 354 CNLKSLNLRGVHLS----QEISEILDIFSGCVSNGLESLDLRSDSIYG----HLTDQLGQ 405
             LK L+L+    +      ++  L          L  L L    +       + D   +
Sbjct: 216 QELKVLDLQDNTFTHLGSSALAIAL-----KSWPNLRELGLNDCLLSARGAAAVVDAFSK 270

Query: 406 FKN--IVTLDFANNSI----VGLIPESLGQ-LSTLRVLRINDNKL 443
            +N  + TL    N I    V  +   + + +  L  L +N N+ 
Sbjct: 271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 55.9 bits (135), Expect = 3e-08
 Identities = 41/283 (14%), Positives = 87/283 (30%), Gaps = 60/283 (21%)

Query: 482 LVALGLRNCYVGSR----FPLWLYSQKHLQFLYLVNSSISD--IFPI-RFLKSASQLKFL 534
           +    L+   + +         L     ++ + L  ++I       +   + S   L+  
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 535 DLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLC 594
           +       G + +       L+L                 L  + LS+N F  +    L 
Sbjct: 66  EFSDIFT-GRVKDEIPEALRLLLQALLKC---------PKLHTVRLSDNAFGPTAQEPLI 115

Query: 595 YRINETKSLNALQLNDNYLNGE--------LPDCWMSY-----QNLKTLKLSNNKFTGN- 640
             +++   L  L L++N L  +        L +  ++        L+++    N+     
Sbjct: 116 DFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS 175

Query: 641 ---LPYSMGSLTSLVWLHLGENRL-----SGNILVSLKNCTALESLDVGENEFVGNIPTW 692
                 +  S   L  + + +N +        +L  L  C  L+ LD+ +N         
Sbjct: 176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-------- 227

Query: 693 IGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLS 735
                S  + + L+S                L+ L + D  LS
Sbjct: 228 FTHLGSSALAIALKSWP-------------NLRELGLNDCLLS 257

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 39/335 (11%), Positives = 86/335 (25%), Gaps = 95/335 (28%)

Query: 600 TKSLNALQLNDNYLNGE----LPDCWMSYQNLKTLKLSNNKFTGN----LPYSMGSLTSL 651
             S+    L  + +  E    +    +   ++K + LS N         L  ++ S   L
Sbjct: 3   RFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDL 62

Query: 652 VWLHLGENRLS----------GNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMV 701
                 +                +L +L  C  L ++ + +N          G      +
Sbjct: 63  EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA--------FGPTAQEPL 114

Query: 702 VLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQY 761
           +  L  +               L+ L + +N L                           
Sbjct: 115 IDFLSKHTP-------------LEHLYLHNNGLG-------------------------- 135

Query: 762 LPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGK----IPLEVTNLKA 817
                      +  A  + +  +         +R I   RN               + + 
Sbjct: 136 -----PQAGAKI--ARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 188

Query: 818 LQSLNFSYNSFTGR-----IPESIGVMRSLESIDFSANQLSGE----IPESMSSLTFLNH 868
           L ++    N          + E +   + L+ +D   N  +      +  ++ S   L  
Sbjct: 189 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 248

Query: 869 LNLSNNNLTG----------KIPSSTQLQSFDVSS 893
           L L++  L+               +  LQ+  +  
Sbjct: 249 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQY 283

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 74.4 bits (182), Expect = 7e-14
 Identities = 46/287 (16%), Positives = 86/287 (29%), Gaps = 26/287 (9%)

Query: 57  DPSNRLASWSGNGDCCAWAGVFCDNITGHVLHLDLRNPFNYHKESEYEAIRRTALVGKIN 116
           D +     W         + V+  ++    L+  L         +  ++ +   L+    
Sbjct: 279 DEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRP 338

Query: 117 PSLLD----LKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLS 172
                     + L   +LS    +   +     S   L+ L          I   +  L 
Sbjct: 339 ECWCRDSATDEQLFRCELSVE--KSTVLQSELESCKELQELEPENKWCLLTIILLMRALD 396

Query: 173 NLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLAN 232
            L +   +  Y         L  +  +    L  +      +  ++  +   +  L LA+
Sbjct: 397 PLLYEKETLQYFST------LKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAH 450

Query: 233 CQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHF 292
             L     L       +T LDLS N+             +P  L  L  L  L    N  
Sbjct: 451 KDLTVLCHLE--QLLLVTHLDLSHNRLRA----------LPPALAALRCLEVLQASDNAL 498

Query: 293 NSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLN 339
             ++   +     L+ L L NN LQ +   + L +   +  L+L  N
Sbjct: 499 -ENVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 67.9 bits (165), Expect = 8e-12
 Identities = 58/351 (16%), Positives = 104/351 (29%), Gaps = 32/351 (9%)

Query: 36  YHVGCLGSEKEALLSFKRDLKDPSNRLASW--------SGNGDCCAWAGVFCDNITGHVL 87
           YH   LG  +   +     +      L+          S  G           ++     
Sbjct: 231 YHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTP 290

Query: 88  HLDLRNPFNYHKESEYEAIRRTALVGKINPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSM 147
               R    +  +    ++                       L  +  +     R   + 
Sbjct: 291 DGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPE--CWCRDSATD 348

Query: 148 GNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSV 207
             L    LS  +   ++   L +   LQ L+  + + L       +  L  L +      
Sbjct: 349 EQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLT-IILLMRALDPLLYEKETLQ 406

Query: 208 NLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSW 267
             S     L   + + +     L +  L   S+L    ++ + VL L+            
Sbjct: 407 YFST----LKAVDPMRAAYLDDLRSKFLLENSVL-KMEYADVRVLHLAHKDLTV------ 455

Query: 268 VFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGN 327
                   L+ L  + HL L  N    ++P  L     LE L  S+N+L+  +D   + N
Sbjct: 456 -----LCHLEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNALE-NVDG--VAN 506

Query: 328 LTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFS 378
           L  +  L L  N   +    + + S   L  LNL+G  L QE      +  
Sbjct: 507 LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 557

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 62.1 bits (150), Expect = 6e-10
 Identities = 27/113 (23%), Positives = 45/113 (39%), Gaps = 5/113 (4%)

Query: 117 PSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQF 176
             L  L  +++LDLS N  +   +P    ++  L  L  S   +  +    + NL  LQ 
Sbjct: 457 CHLEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALENV--DGVANLPRLQE 512

Query: 177 LDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFD-WLMVTNKLPSLVEL 228
           L L +N L        L     L  L+L+  +L +       +   LPS+  +
Sbjct: 513 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 57.8 bits (139), Expect = 1e-08
 Identities = 31/230 (13%), Positives = 73/230 (31%), Gaps = 33/230 (14%)

Query: 244 ANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRF 303
           A    L   +LS  +                 L++   L+ L  ++     +I   +   
Sbjct: 346 ATDEQLFRCELSVEKSTVL----------QSELESCKELQELEPENKWCLLTIILLMRAL 395

Query: 304 IHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIE----GRIPRSMASLCNLKSL 359
             L Y   +               L ++  +  +    +                +++ L
Sbjct: 396 DPLLYEKETLQYFS---------TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVL 446

Query: 360 NLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSI 419
           +L    L+      L      +   +  LDL  + +   L   L   + +  L  ++N++
Sbjct: 447 HLAHKDLTV-----LCHLEQLLL--VTHLDLSHNRL-RALPPALAALRCLEVLQASDNAL 498

Query: 420 VGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLT 469
             +  + +  L  L+ L + +N+L  + +     +  +L    + GN L 
Sbjct: 499 ENV--DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 54.4 bits (130), Expect = 2e-07
 Identities = 54/380 (14%), Positives = 103/380 (27%), Gaps = 68/380 (17%)

Query: 162 GMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNK 221
            ++     +              L V     L+  S +  L L       + +W      
Sbjct: 234 WLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPD-- 291

Query: 222 LPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTS 281
                   +  C L   SL       +  V+    +   +  +         R       
Sbjct: 292 -GRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQ 350

Query: 282 LRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMG 341
           L    L S   ++ + + L     L+ L   N     TI    +  L  + +   +L   
Sbjct: 351 LFRCEL-SVEKSTVLQSELESCKELQELEPENKWCLLTIILL-MRALDPLLYEKETLQ-- 406

Query: 342 IEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTD 401
                    ++L  +  +    +   +    + +         +  L L    +   +  
Sbjct: 407 -------YFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL--TVLC 457

Query: 402 QLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWF 461
            L Q   +  LD ++N +   +P +L  L  L VL+ +DN L       +   +  L   
Sbjct: 458 HLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALE------NVDGVANL--- 507

Query: 462 RVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFP 521
                                                       LQ L L N+ +     
Sbjct: 508 ------------------------------------------PRLQELLLCNNRLQQSAA 525

Query: 522 IRFLKSASQLKFLDLGQNQI 541
           I+ L S  +L  L+L  N +
Sbjct: 526 IQPLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 53.6 bits (128), Expect = 2e-07
 Identities = 45/288 (15%), Positives = 89/288 (30%), Gaps = 34/288 (11%)

Query: 603 LNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLS 662
           L A  LND          W    + K   L  ++          +   L    L   + +
Sbjct: 304 LPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPE-CWCRDSATDEQLFRCELSVEKST 362

Query: 663 GNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLA 722
             +   L++C  L+ L+                     ++L++R+          L   +
Sbjct: 363 -VLQSELESCKELQELEPENK------------WCLLTIILLMRALDPLLYEKETLQYFS 409

Query: 723 FLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKG 782
            L+ +D                   +    S        L +      +L      ++  
Sbjct: 410 TLKAVDP-------------MRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL 456

Query: 783 EMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSL 842
             ++    L LV  +D+S N     +P  +  L+ L+ L  S N+    +   +  +  L
Sbjct: 457 CHLEQ---LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRL 510

Query: 843 ESIDFSANQLSG-EIPESMSSLTFLNHLNLSNNNLTGKIPSSTQLQSF 889
           + +    N+L      + + S   L  LNL  N+L  +     +L   
Sbjct: 511 QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 51.3 bits (122), Expect = 1e-06
 Identities = 37/285 (12%), Positives = 78/285 (27%), Gaps = 37/285 (12%)

Query: 360 NLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSI 419
           +L    L+ ++ +         S+  +   L  D             + +   + +    
Sbjct: 303 DLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDR-PECWCRDSATDEQLFRCELSVEKS 361

Query: 420 VGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPP 479
             ++   L     L+ L   +     T+       +  L     +   L        + P
Sbjct: 362 T-VLQSELESCKELQELEPENKWCLLTI----ILLMRALDPLLYEKETLQYFSTLKAVDP 416

Query: 480 FQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQN 539
            +   L            +       ++ L+L +  ++ +  +  L     +  LDL  N
Sbjct: 417 MRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLL---VTHLDLSHN 473

Query: 540 QIHGPIPNLTEFTGLLILSVYSNNMSGPLPLIS-SNLVFLDLSNNLFSGSISPFLCYRIN 598
           ++    P L     L +L    N +     + +   L  L L NN            R+ 
Sbjct: 474 RLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNN------------RLQ 521

Query: 599 ETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPY 643
           ++ ++  L                S   L  L L  N        
Sbjct: 522 QSAAIQPLV---------------SCPRLVLLNLQGNSLCQEEGI 551

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 50.9 bits (121), Expect = 2e-06
 Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 13/115 (11%)

Query: 794 VRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLS 853
           VR++ ++  + +    LE   L  +  L+ S+N     +P ++  +R LE +  S N L 
Sbjct: 443 VRVLHLAHKDLTVLCHLE--QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE 499

Query: 854 GEIPESMSSLTFLNHLNLSNNNLT-----GKIPSSTQLQSFDVSSFAGNDLCGAP 903
             +   +++L  L  L L NN L        + S  +L   ++    GN LC   
Sbjct: 500 -NVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ---GNSLCQEE 549

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 47.4 bits (112), Expect = 2e-05
 Identities = 19/107 (17%), Positives = 47/107 (43%), Gaps = 6/107 (5%)

Query: 789 DILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFS 848
           D +    + D+ R+ F  +  +       ++ L+ ++   T  +   +  +  +  +D S
Sbjct: 415 DPMRAAYLDDL-RSKFLLENSVLKMEYADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLS 471

Query: 849 ANQLSGEIPESMSSLTFLNHLNLSNNNLT--GKIPSSTQLQSFDVSS 893
            N+L   +P ++++L  L  L  S+N L     + +  +LQ   + +
Sbjct: 472 HNRLR-ALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCN 517

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 69.2 bits (170), Expect = 5e-13
 Identities = 47/194 (24%), Positives = 66/194 (34%), Gaps = 25/194 (12%)

Query: 127 YLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLY 186
            LDL  N    +   + F  +  LR L L+  ++  +       L NL+ L ++ N L  
Sbjct: 41  KLDLQSNKLSSLP-SKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99

Query: 187 VDN--FWWLSGLSFLEHLDLRSVNLSK----AFDWLMVTNKLPSLVELRLANCQLHHFSL 240
           +    F     L  L  L L    L       FD       L  L  L L   +L     
Sbjct: 100 LPIGVF---DQLVNLAELRLDRNQLKSLPPRVFD------SLTKLTYLSLGYNELQSLPK 150

Query: 241 LATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWL 300
                 +SL  L L +NQ  +  +P   F         LT L+ L LD+N          
Sbjct: 151 GVFDKLTSLKELRLYNNQLKR--VPEGAF-------DKLTELKTLKLDNNQLKRVPEGAF 201

Query: 301 YRFIHLEYLSLSNN 314
                L+ L L  N
Sbjct: 202 DSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 61.1 bits (149), Expect = 3e-10
 Identities = 51/237 (21%), Positives = 96/237 (40%), Gaps = 45/237 (18%)

Query: 232 NCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNH 291
           +C     + + +   +    LDL  N+     +PS  F         LT LR L L+ N 
Sbjct: 22  DCSSKKLTAIPSNIPADTKKLDLQSNKLSS--LPSKAF-------HRLTKLRLLYLNDNK 72

Query: 292 FNSSIPNWLY-RFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSM 350
              ++P  ++    +LE L +++N LQ  +       L +++ L L  N  ++  +P  +
Sbjct: 73  L-QTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRN-QLK-SLPPRV 128

Query: 351 -ASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNI 409
             SL  L  L+L                     N L+SL      ++  LT       ++
Sbjct: 129 FDSLTKLTYLSLGY-------------------NELQSL---PKGVFDKLT-------SL 159

Query: 410 VTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGN 466
             L   NN +  +   +  +L+ L+ L++++N+L   +    F +L KL   ++  N
Sbjct: 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 56.1 bits (136), Expect = 1e-08
 Identities = 42/145 (28%), Positives = 63/145 (43%), Gaps = 16/145 (11%)

Query: 122 LKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSS 181
           LK+L  L ++ N  Q +     F  + NL  L L R ++  + P    +L+ L +L L  
Sbjct: 84  LKNLETLWVTDNKLQALP-IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY 142

Query: 182 NYLLYVDN--FWWLSGLSFLEHLDLRSVNLSK----AFDWLMVTNKLPSLVELRLANCQL 235
           N L  +    F     L+ L+ L L +  L +    AFD      KL  L  L+L N QL
Sbjct: 143 NELQSLPKGVF---DKLTSLKELRLYNNQLKRVPEGAFD------KLTELKTLKLDNNQL 193

Query: 236 HHFSLLATANFSSLTVLDLSDNQFD 260
                 A  +   L +L L +N +D
Sbjct: 194 KRVPEGAFDSLEKLKMLQLQENPWD 218

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 43/219 (19%), Positives = 87/219 (39%), Gaps = 42/219 (19%)

Query: 224 SLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLR 283
              +L L + +L      A    + L +L L+DN+     +P+ +F       + L +L 
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT--LPAGIF-------KELKNLE 88

Query: 284 HLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIE 343
            L +  N   +       + ++L  L L  N L+ ++      +LT +++L L  N  ++
Sbjct: 89  TLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNE-LQ 146

Query: 344 GRIPRSM-ASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQ 402
             +P+ +   L +LK L L                    +N L+ +    +  +  LT  
Sbjct: 147 -SLPKGVFDKLTSLKELRLY-------------------NNQLKRV---PEGAFDKLT-- 181

Query: 403 LGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDN 441
                 + TL   NN +  +   +   L  L++L++ +N
Sbjct: 182 -----ELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 44/191 (23%), Positives = 76/191 (39%), Gaps = 34/191 (17%)

Query: 280 TSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLN 339
              + L L SN  +S      +R   L  L L++N LQ T+ +     L ++  L ++ N
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDN 95

Query: 340 MGIEGRIPRSM-ASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGH 398
             ++  +P  +   L NL  L L                     N L+SL      ++  
Sbjct: 96  -KLQ-ALPIGVFDQLVNLAELRLD-------------------RNQLKSL---PPRVFDS 131

Query: 399 LTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKL 458
           LT        +  L    N +  L      +L++L+ LR+ +N+L   +    F  LT+L
Sbjct: 132 LT-------KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTEL 183

Query: 459 SWFRVDGNKLT 469
              ++D N+L 
Sbjct: 184 KTLKLDNNQLK 194

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 48.8 bits (117), Expect = 3e-06
 Identities = 55/231 (23%), Positives = 87/231 (37%), Gaps = 54/231 (23%)

Query: 431 STLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPP--FQLVALGLR 488
           +  + L +  NKL+ +L +  F  LTKL    ++ NKL        +P   F+     L+
Sbjct: 37  ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQT------LPAGIFK----ELK 85

Query: 489 NCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNL 548
           N                L+ L++ ++ +  + PI        L  L L +NQ+   +P  
Sbjct: 86  N----------------LETLWVTDNKLQAL-PIGVFDQLVNLAELRLDRNQLKS-LPPR 127

Query: 549 TEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQL 608
             F  L                  + L +L L  N    S+   +  ++    SL  L+L
Sbjct: 128 V-FDSL------------------TKLTYLSLGYNELQ-SLPKGVFDKL---TSLKELRL 164

Query: 609 NDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGEN 659
            +N L       +     LKTLKL NN+       +  SL  L  L L EN
Sbjct: 165 YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.7 bits (109), Expect = 3e-05
 Identities = 44/204 (21%), Positives = 82/204 (40%), Gaps = 28/204 (13%)

Query: 506 LQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMS 565
            + L L ++ +S +    F    ++L+ L L  N++   +P    F  L           
Sbjct: 39  TKKLDLQSNKLSSLPSKAF-HRLTKLRLLYLNDNKLQT-LPA-GIFKEL----------- 84

Query: 566 GPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQ 625
                   NL  L +++N    ++   +    ++  +L  L+L+ N L    P  + S  
Sbjct: 85  -------KNLETLWVTDNKLQ-ALPIGV---FDQLVNLAELRLDRNQLKSLPPRVFDSLT 133

Query: 626 NLKTLKLSNNKFTGNLPYSM-GSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENE 684
            L  L L  N+   +LP  +   LTSL  L L  N+L      +    T L++L +  N+
Sbjct: 134 KLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ 192

Query: 685 FVGNIPTWIGERFSRMVVLILRSN 708
               +P    +   ++ +L L+ N
Sbjct: 193 LK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 41.9 bits (99), Expect = 6e-04
 Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 10/119 (8%)

Query: 626 NLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLS---GNILVSLKNCTALESLDVGE 682
           + K L L +NK +     +   LT L  L+L +N+L      I   L     LE+L V +
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKEL---KNLETLWVTD 94

Query: 683 NEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCD-LAFLQILDIADNNLSGAIPN 740
           N+    +P  + ++   +  L L  N+    LP  + D L  L  L +  N L  ++P 
Sbjct: 95  NKLQ-ALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNELQ-SLPK 150

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 70.3 bits (172), Expect = 2e-12
 Identities = 69/462 (14%), Positives = 140/462 (30%), Gaps = 36/462 (7%)

Query: 85  HVLHLDLRNPFNYHKESEYEAIRRTALVGKINPSLLDLKHLSYLDLSFNDFQGIQIPRFF 144
            V  ++L+   ++   +         +   I         L  + L         +    
Sbjct: 67  KVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIA 126

Query: 145 GSMGNLRYLNLSR-TRIGGM-IPHHLGNLSNLQFLDLSSNYLLYVDNFWW---LSGLSFL 199
            S  N + L LS         +        NL+ LDL  + +  V   W        + L
Sbjct: 127 KSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSL 186

Query: 200 EHLDLRSVNLSKAFDWLM-VTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQ 258
             L++  +    +F  L  +  + P+L  L+L                  L  L      
Sbjct: 187 VSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYT 246

Query: 259 FDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQG 318
            +   +   V+  +   L     LR L    +   + +P        L  L+LS  ++Q 
Sbjct: 247 AE---VRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQS 303

Query: 319 TIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLC-NLKSLNLRGVHLSQEISE----- 372
               + L     +  L +   +   G     +AS C +L+ L +                
Sbjct: 304 YDLVKLLCQCPKLQRLWVLDYIEDAG--LEVLASTCKDLRELRVFPSEPFVMEPNVALTE 361

Query: 373 --ILDIFSGCVSNGLESLDLR----SDSIYGHLTDQLGQFKNI-------VTLDFANNSI 419
             ++ +  GC    LES+       +++    +                    D+     
Sbjct: 362 QGLVSVSMGC--PKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEP 419

Query: 420 VGLIPESLGQ-LSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLT-LGVKHDWI 477
           + +   ++ +    LR L ++    +     I      K+    V     + LG+ H   
Sbjct: 420 LDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYI-GTYAKKMEMLSVAFAGDSDLGMHHVLS 478

Query: 478 PPFQLVALGLRNCYVGSR-FPLWLYSQKHLQFLYLVNSSISD 518
               L  L +R+C  G +         + ++ L++ + S+S 
Sbjct: 479 GCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF 520

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 53.7 bits (129), Expect = 2e-07
 Identities = 45/285 (15%), Positives = 86/285 (30%), Gaps = 22/285 (7%)

Query: 101 SEYEAIRRTALVGKINPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRI 160
             Y A  R  +   ++ +L   K L  L   F D     +P  +     L  LNLS   +
Sbjct: 243 GGYTAEVRPDVYSGLSVALSGCKELRCLS-GFWDAVPAYLPAVYSVCSRLTTLNLSYATV 301

Query: 161 GGM-IPHHLGNLSNLQFLDLSSNY----LLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDW 215
               +   L     LQ L +        L  +      S    L  L +           
Sbjct: 302 QSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVL-----ASTCKDLRELRVFPSEPFVMEPN 356

Query: 216 LMVTNK--------LPSLVELRLANCQLHHFSLLA-TANFSSLTVLDLSDNQFDKWFIPS 266
           + +T +         P L  +     Q+ + +L+    N  ++T   L   +       +
Sbjct: 357 VALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT 416

Query: 267 WVFG--PIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEA 324
                      +++   LR L L     +            +E LS++            
Sbjct: 417 LEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHV 476

Query: 325 LGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQE 369
           L    S+  L++      +  +  + + L  ++SL +    +S  
Sbjct: 477 LSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFG 521

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 50.7 bits (121), Expect = 2e-06
 Identities = 72/504 (14%), Positives = 137/504 (27%), Gaps = 104/504 (20%)

Query: 193 LSGLSFLEHLDLRSVNLSKAFDWLM--VTNKLPSLVELRLANCQLHHFSLLA-TANFSSL 249
           L G       +L            +  +++    L E+RL    +    L     +F + 
Sbjct: 73  LKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNF 132

Query: 250 TVLDLS--DNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFI--- 304
            VL LS  +               +        +L+ L L  +  +    +WL  F    
Sbjct: 133 KVLVLSSCEGFSTDG---------LAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183

Query: 305 -HLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRG 363
             L  L++S   L   +   AL  L +                        NLKSL L  
Sbjct: 184 TSLVSLNISC--LASEVSFSALERLVT---------------------RCPNLKSLKLNR 220

Query: 364 VHLSQEISEILDIFSGCVSNGLESLDLRS------DSIYGHLTDQLGQFKNIVTLDFANN 417
              +  + ++  +        LE L            +Y  L+  L   K +  L    +
Sbjct: 221 ---AVPLEKLATLLQRAPQ--LEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWD 275

Query: 418 SIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWI 477
           ++   +P      S L  L ++   +             KL    V       G++    
Sbjct: 276 AVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLAS 335

Query: 478 PPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLG 537
               L  L +                    F+   N ++++   +       +L+ +   
Sbjct: 336 TCKDLRELRVFPS---------------EPFVMEPNVALTEQGLVSVSMGCPKLESVLYF 380

Query: 538 QNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRI 597
             Q+            L+ ++               N+    L        I P     +
Sbjct: 381 CRQMTN--------AALITIARNR-----------PNMTRFRLCI------IEPKAPDYL 415

Query: 598 NETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLG 657
                   L+  D      +  C    ++L+ L LS         Y       +  L + 
Sbjct: 416 T-------LEPLDIGFGAIVEHC----KDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVA 464

Query: 658 ENRLSGNILVSL-KNCTALESLDV 680
               S   +  +   C +L  L++
Sbjct: 465 FAGDSDLGMHHVLSGCDSLRKLEI 488

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 63.1 bits (154), Expect = 3e-11
 Identities = 39/167 (23%), Positives = 58/167 (34%), Gaps = 38/167 (22%)

Query: 128 LDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYV 187
           L L+ N+F  ++    F  +  LR +N S  +I  +        S +  + L+SN L  V
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV 96

Query: 188 DNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFS 247
                                  K F        L SL  L L + ++      +    S
Sbjct: 97  Q---------------------HKMFK------GLESLKTLMLRSNRITCVGNDSFIGLS 129

Query: 248 SLTVLDLSDNQFDKWFIPSWVFGPIPRG-LQNLTSLRHLGLDSNHFN 293
           S+ +L L DNQ             +  G    L SL  L L +N FN
Sbjct: 130 SVRLLSLYDNQITT----------VAPGAFDTLHSLSTLNLLANPFN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 27/147 (18%), Positives = 49/147 (33%), Gaps = 19/147 (12%)

Query: 172 SNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSK----AFDWLMVTNKLPSLVE 227
                L L++N    ++       L  L  ++  +  ++     AF+          + E
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFE------GASGVNE 85

Query: 228 LRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGL 287
           + L + +L +          SL  L L  N+     + +  F         L+S+R L L
Sbjct: 86  ILLTSNRLENVQHKMFKGLESLKTLMLRSNRI--TCVGNDSF-------IGLSSVRLLSL 136

Query: 288 DSNHFNSSIPNWLYRFIHLEYLSLSNN 314
             N   +  P        L  L+L  N
Sbjct: 137 YDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 30/160 (18%), Positives = 56/160 (35%), Gaps = 31/160 (19%)

Query: 307 EYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHL 366
             L L+NN       +     L  +  ++ S N  I      +      +  + L     
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTS--- 90

Query: 367 SQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPES 426
                           N LE++      ++  L        ++ TL   +N I  +  +S
Sbjct: 91  ----------------NRLENVQ---HKMFKGLE-------SLKTLMLRSNRITCVGNDS 124

Query: 427 LGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGN 466
              LS++R+L + DN++  T++   F  L  LS   +  N
Sbjct: 125 FIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.8 bits (96), Expect = 9e-04
 Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 5/93 (5%)

Query: 571 ISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTL 630
           I      L L+NN F+  +     ++  +   L  +  ++N +       +     +  +
Sbjct: 30  IPQYTAELRLNNNEFT-VLEATGIFK--KLPQLRKINFSNNKITDIEEGAFEGASGVNEI 86

Query: 631 KLSNNKFTGNLPYSM-GSLTSLVWLHLGENRLS 662
            L++N+   N+ + M   L SL  L L  NR++
Sbjct: 87  LLTSNRLE-NVQHKMFKGLESLKTLMLRSNRIT 118

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 58.2 bits (141), Expect = 5e-10
 Identities = 33/117 (28%), Positives = 46/117 (39%), Gaps = 4/117 (3%)

Query: 113 GKINPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLS 172
           GKI     +  +L +L L       +        +  L+ L LS  RI G +      L 
Sbjct: 39  GKIEGLTAEFVNLEFLSLINVGLISVSN---LPKLPKLKKLELSENRIFGGLDMLAEKLP 95

Query: 173 NLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFD-WLMVTNKLPSLVEL 228
           NL  L+LS N L  +     L  L  L+ LDL +  ++   D    V   LP L  L
Sbjct: 96  NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.4 bits (118), Expect = 6e-07
 Identities = 29/119 (24%), Positives = 44/119 (36%), Gaps = 12/119 (10%)

Query: 222 LPSLVELRLANCQLHHFSLL-ATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLT 280
             ++ EL L NC+ +   +   TA F +L  L L +                   L  L 
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-----------SNLPKLP 71

Query: 281 SLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLN 339
            L+ L L  N     +     +  +L +L+LS N L+     E L  L  +  LDL   
Sbjct: 72  KLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 34/134 (25%), Positives = 48/134 (35%), Gaps = 7/134 (5%)

Query: 128 LDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYV 187
           L L        +I        NL +L+L    +  +   +L  L  L+ L+LS N +   
Sbjct: 29  LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGG 86

Query: 188 DNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLAN---CQLHHFSLLATA 244
            +      L  L HL+L   N  K    L    KL  L  L L N     L+ +      
Sbjct: 87  LD-MLAEKLPNLTHLNLSG-NKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFK 144

Query: 245 NFSSLTVLDLSDNQ 258
               LT LD  D +
Sbjct: 145 LLPQLTYLDGYDRE 158

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 30/143 (20%), Positives = 46/143 (32%), Gaps = 38/143 (26%)

Query: 149 NLRYLNLSRTRIG-GMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSV 207
            +R L L   +   G I        NL+FL L +  L+ V N                  
Sbjct: 25  AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNL----------------- 67

Query: 208 NLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSW 267
                        KLP L +L L+  ++     +      +LT L+LS N+         
Sbjct: 68  ------------PKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDI----- 110

Query: 268 VFGPIPRGLQNLTSLRHLGLDSN 290
                   L+ L  L+ L L + 
Sbjct: 111 ---STLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 26/135 (19%), Positives = 51/135 (37%), Gaps = 8/135 (5%)

Query: 337 SLNMGIEGRIPRSMA--SLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDS 394
           S  M ++ RI   +   +   ++ L L     +    +I  + +  V+  LE L L +  
Sbjct: 5   SSGMDMKRRIHLELRNRTPAAVRELVLDNCKSN--DGKIEGLTAEFVN--LEFLSLINVG 60

Query: 395 IYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFAN 454
           +       L +   +  L+ + N I G +     +L  L  L ++ NKL    +      
Sbjct: 61  L--ISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKK 118

Query: 455 LTKLSWFRVDGNKLT 469
           L  L    +   ++T
Sbjct: 119 LECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 8/116 (6%)

Query: 327 NLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLE 386
              ++  L L      +G+I    A   NL+ L+L  V L       +          L+
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-----VSNLPKLPK--LK 74

Query: 387 SLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGL-IPESLGQLSTLRVLRINDN 441
            L+L  + I+G L     +  N+  L+ + N +  +   E L +L  L+ L + + 
Sbjct: 75  KLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 7/87 (8%)

Query: 601 KSLNALQLNDNYLN--GELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGE 658
            +L  L L +  L     LP        LK L+LS N+  G L      L +L  L+L  
Sbjct: 49  VNLEFLSLINVGLISVSNLPKL----PKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSG 104

Query: 659 NRLSG-NILVSLKNCTALESLDVGENE 684
           N+L   + L  LK    L+SLD+   E
Sbjct: 105 NKLKDISTLEPLKKLECLKSLDLFNCE 131

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 7/87 (8%)

Query: 602 SLNALQLNDNYLN-GELPDCWMSYQNLKTLKLSNNKFT--GNLPYSMGSLTSLVWLHLGE 658
           ++  L L++   N G++      + NL+ L L N       NLP     L  L  L L E
Sbjct: 25  AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLP----KLPKLKKLELSE 80

Query: 659 NRLSGNILVSLKNCTALESLDVGENEF 685
           NR+ G + +  +    L  L++  N+ 
Sbjct: 81  NRIFGGLDMLAEKLPNLTHLNLSGNKL 107

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.1 bits (94), Expect = 8e-04
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 2/77 (2%)

Query: 801 RNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESM 860
             +  GKI         L+ L+         +  ++  +  L+ ++ S N++ G +    
Sbjct: 34  CKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFGGLDMLA 91

Query: 861 SSLTFLNHLNLSNNNLT 877
             L  L HLNLS N L 
Sbjct: 92  EKLPNLTHLNLSGNKLK 108

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 59.3 bits (144), Expect = 7e-10
 Identities = 32/139 (23%), Positives = 54/139 (38%), Gaps = 16/139 (11%)

Query: 128 LDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYV 187
           + L  N  + I  P  F     LR ++LS  +I  + P     L +L  L L  N +  +
Sbjct: 37  IRLEQNTIKVIP-PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL 95

Query: 188 DN--FWWLSGLSFLEHLDLRSVNLSK----AFDWLMVTNKLPSLVELRLANCQLHHFSLL 241
               F    GL  L+ L L +  ++     AF        L +L  L L + +L   +  
Sbjct: 96  PKSLF---EGLFSLQLLLLNANKINCLRVDAFQ------DLHNLNLLSLYDNKLQTIAKG 146

Query: 242 ATANFSSLTVLDLSDNQFD 260
             +   ++  + L+ N F 
Sbjct: 147 TFSPLRAIQTMHLAQNPFI 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 30/142 (21%), Positives = 57/142 (40%), Gaps = 13/142 (9%)

Query: 223 PSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSL 282
            ++ E+RL    +      A + +  L  +DLS+NQ  +  +    F       Q L SL
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE--LAPDAF-------QGLRSL 82

Query: 283 RHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGI 342
             L L  N       +       L+ L L+ N +   +  +A  +L +++ L L  N   
Sbjct: 83  NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNK-- 139

Query: 343 EGRIPRSM-ASLCNLKSLNLRG 363
              I +   + L  +++++L  
Sbjct: 140 LQTIAKGTFSPLRAIQTMHLAQ 161

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 53.5 bits (129), Expect = 6e-08
 Identities = 34/152 (22%), Positives = 57/152 (37%), Gaps = 26/152 (17%)

Query: 149 NLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYL--LYVDNFWWLSGLSFLEHLDLRS 206
            +  + L +  I  + P        L+ +DLS+N +  L  D F    GL  L  L L  
Sbjct: 33  TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF---QGLRSLNSLVLYG 89

Query: 207 VNL----SKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKW 262
             +       F+       L SL  L L   +++   + A  +  +L +L L DN+    
Sbjct: 90  NKITELPKSLFE------GLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT- 142

Query: 263 FIPSWVFGPIPRG-LQNLTSLRHLGLDSNHFN 293
                    I +G    L +++ + L  N F 
Sbjct: 143 ---------IAKGTFSPLRAIQTMHLAQNPFI 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 36/147 (24%), Positives = 58/147 (39%), Gaps = 17/147 (11%)

Query: 571 ISSNLVFLDLSNNLFSGSISP--FLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLK 628
           +   +  + L  N     I P  F  Y     K L  + L++N ++   PD +   ++L 
Sbjct: 30  LPETITEIRLEQNTIK-VIPPGAFSPY-----KKLRRIDLSNNQISELAPDAFQGLRSLN 83

Query: 629 TLKLSNNKFTGNLPYSM-GSLTSLVWLHLGENRLSG---NILVSLKNCTALESLDVGENE 684
           +L L  NK T  LP S+   L SL  L L  N+++    +    L N   L  L + +N+
Sbjct: 84  SLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHN---LNLLSLYDNK 139

Query: 685 FVGNIPTWIGERFSRMVVLILRSNKFH 711
               I          +  + L  N F 
Sbjct: 140 L-QTIAKGTFSPLRAIQTMHLAQNPFI 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 37/153 (24%), Positives = 56/153 (36%), Gaps = 25/153 (16%)

Query: 507 QFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSG 566
             + L  ++I  I P  F     +L+ +DL  NQI   +     F GL            
Sbjct: 35  TEIRLEQNTIKVIPPGAF-SPYKKLRRIDLSNNQISE-LAPDA-FQGL------------ 79

Query: 567 PLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQN 626
                  +L  L L  N  +  +   L   +    SL  L LN N +N    D +    N
Sbjct: 80  ------RSLNSLVLYGNKIT-ELPKSLFEGL---FSLQLLLLNANKINCLRVDAFQDLHN 129

Query: 627 LKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGEN 659
           L  L L +NK       +   L ++  +HL +N
Sbjct: 130 LNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 39/195 (20%), Positives = 61/195 (31%), Gaps = 58/195 (29%)

Query: 272 IPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSI 331
           IP  L    ++  + L+ N      P     +  L  + LSNN +   +  +A   L S+
Sbjct: 26  IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSL 82

Query: 332 SWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLR 391
           + L L  N                +  L                +F      GL SL L 
Sbjct: 83  NSLVLYGN---------------KITELPKS-------------LF-----EGLFSLQL- 108

Query: 392 SDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIH 451
                               L    N I  L  ++   L  L +L + DNKL  T++   
Sbjct: 109 --------------------LLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGT 147

Query: 452 FANLTKLSWFRVDGN 466
           F+ L  +    +  N
Sbjct: 148 FSPLRAIQTMHLAQN 162

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 57.0 bits (138), Expect = 1e-09
 Identities = 29/117 (24%), Positives = 44/117 (37%), Gaps = 4/117 (3%)

Query: 113 GKINPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLS 172
           GK+     + + L +L         I        +  L+ L LS  R+ G +        
Sbjct: 32  GKLEGLTDEFEELEFLSTINVGLTSIAN---LPKLNKLKKLELSDNRVSGGLEVLAEKCP 88

Query: 173 NLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFD-WLMVTNKLPSLVEL 228
           NL  L+LS N +  +     L  L  L+ LDL +  ++   D    V   LP L  L
Sbjct: 89  NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.6 bits (111), Expect = 5e-06
 Identities = 26/117 (22%), Positives = 41/117 (35%), Gaps = 12/117 (10%)

Query: 224 SLVELRLANCQLHHFSLLA-TANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSL 282
            + EL L N + +   L   T  F  L  L   +                   L  L  L
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-----------ANLPKLNKL 66

Query: 283 RHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLN 339
           + L L  N  +  +     +  +L +L+LS N ++     E L  L ++  LDL   
Sbjct: 67  KKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 28/136 (20%), Positives = 46/136 (33%), Gaps = 7/136 (5%)

Query: 121 DLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLS 180
               +  L L  +     ++         L +L+     +  +   +L  L+ L+ L+LS
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELS 72

Query: 181 SNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLAN---CQLHH 237
            N +              L HL+L   N  K    +    KL +L  L L N     L+ 
Sbjct: 73  DNRVSGGLE-VLAEKCPNLTHLNLSG-NKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130

Query: 238 FSLLATANFSSLTVLD 253
           +          LT LD
Sbjct: 131 YRENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 25/143 (17%), Positives = 46/143 (32%), Gaps = 38/143 (26%)

Query: 149 NLRYLNLSRTRIG-GMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSV 207
           +++ L L  +R   G +         L+FL   +  L  + N                  
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANL----------------- 60

Query: 208 NLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSW 267
                        KL  L +L L++ ++     +      +LT L+LS N+         
Sbjct: 61  ------------PKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDL----- 103

Query: 268 VFGPIPRGLQNLTSLRHLGLDSN 290
                   L+ L +L+ L L + 
Sbjct: 104 ---STIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 17/118 (14%), Positives = 42/118 (35%), Gaps = 6/118 (5%)

Query: 352 SLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVT 411
           +  ++K L L          ++  +        LE L   +  +   + + L +   +  
Sbjct: 15  TPSDVKELVLDN--SRSNEGKLEGLTDEFEE--LEFLSTINVGL-TSIAN-LPKLNKLKK 68

Query: 412 LDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLT 469
           L+ ++N + G +     +   L  L ++ NK+    +      L  L    +   ++T
Sbjct: 69  LELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 10/115 (8%)

Query: 573 SNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLN--GELPDCWMSYQNLKTL 630
           S++  L L N+    S    L    +E + L  L   +  L     LP        LK L
Sbjct: 17  SDVKELVLDNS---RSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLN----KLKKL 69

Query: 631 KLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSG-NILVSLKNCTALESLDVGENE 684
           +LS+N+ +G L        +L  L+L  N++   + +  LK    L+SLD+   E
Sbjct: 70  ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE 124

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 23/116 (19%), Positives = 44/116 (37%), Gaps = 8/116 (6%)

Query: 327 NLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLE 386
             + +  L L  +   EG++         L+ L+   V L+      +          L+
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-----IANLPKLNK--LK 67

Query: 387 SLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGL-IPESLGQLSTLRVLRINDN 441
            L+L  + + G L     +  N+  L+ + N I  L   E L +L  L+ L + + 
Sbjct: 68  KLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 7/88 (7%)

Query: 601 KSLNALQLNDNYLN-GELPDCWMSYQNLKTLKLSNNKFT--GNLPYSMGSLTSLVWLHLG 657
             +  L L+++  N G+L      ++ L+ L   N   T   NLP     L  L  L L 
Sbjct: 17  SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLP----KLNKLKKLELS 72

Query: 658 ENRLSGNILVSLKNCTALESLDVGENEF 685
           +NR+SG + V  + C  L  L++  N+ 
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKI 100

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 60.1 bits (146), Expect = 1e-09
 Identities = 54/315 (17%), Positives = 115/315 (36%), Gaps = 59/315 (18%)

Query: 193 LSGLSFLEHLDLRSVNLSKA-----FDWLMVTNKLPSLVELRLANCQL-----HHFSLLA 242
            S    +  LDL   NL              T    S+  L L+   L          + 
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPA--SVTSLNLSGNSLGFKNSDELVQIL 75

Query: 243 TANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNL--------TSLRHLGLDSNHFNS 294
            A  +++T L+LS N                +    L         ++  L L  N F+S
Sbjct: 76  AAIPANVTSLNLSGNFLS------------YKSSDELVKTLAAIPFTITVLDLGWNDFSS 123

Query: 295 SIPNWLYRFI-----HLEYLSLSNNSL--QGTID-SEALGNL-TSISWLDLSLN-MGIEG 344
              +   +        +  L+L  N L  + + +  + L  +  +++ L+L  N +  + 
Sbjct: 124 KSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKN 183

Query: 345 --RIPRSMASL-CNLKSLNLRGVHLSQE-ISEILDIFSGCVSNGLESLDLRSDSIYG--- 397
              + + +AS+  ++ SL+L    L  +  +E+  IFS    N + SL+L  + ++G   
Sbjct: 184 CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSI-PNHVVSLNLCLNCLHGPSL 242

Query: 398 -HLTDQLGQFKNIVTLDFANNSIVGL-------IPESLGQLSTLRVLRINDNKLNGTLSA 449
            +L       K++ T+    + +  +       +  +   +  + ++  N  ++     +
Sbjct: 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI-HPSHS 301

Query: 450 IHFANLTKLSWFRVD 464
           I  +NL +    + D
Sbjct: 302 IPISNLIRELSGKAD 316

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 60.1 bits (146), Expect = 1e-09
 Identities = 52/354 (14%), Positives = 97/354 (27%), Gaps = 81/354 (22%)

Query: 149 NLRYLNLSRTRIGGMIPHHLG-----NLSNLQFLDLSSNYL-----------LYVDNFWW 192
            +  L+LS   +  +    L        +++  L+LS N L           L       
Sbjct: 23  GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP--- 79

Query: 193 LSGLSFLEHLDLRSVNLSKA-----FDWLMVTNKLPSLVELRLANCQL------HHFSLL 241
               + +  L+L    LS          L       ++  L L                 
Sbjct: 80  ----ANVTSLNLSGNFLSYKSSDELVKTLAAIPF--TITVLDLGWNDFSSKSSSEFKQAF 133

Query: 242 ATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNL--------TSLRHLGLDSNHFN 293
           +    +S+T L+L  N                +    L         ++  L L  N+  
Sbjct: 134 SNLP-ASITSLNLRGNDLG------------IKSSDELIQILAAIPANVNSLNLRGNNLA 180

Query: 294 SSIPNWLYRFI-----HLEYLSLSNNSL--QGTID-SEAL-GNLTSISWLDLSLN-MGIE 343
           S     L +F+      +  L LS N L  +   + +         +  L+L LN +   
Sbjct: 181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240

Query: 344 G--RIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSN--GLESLDLRSDSIYG-- 397
               +     SL +L+++ L    +     E          N   +  +D     I+   
Sbjct: 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSH 300

Query: 398 --HLTDQLGQF-KNIVTLDFANNSI-----VGLIPESLGQLSTLRVLRINDNKL 443
              +++ + +           N  +          E L     LR        L
Sbjct: 301 SIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 42/306 (13%), Positives = 84/306 (27%), Gaps = 58/306 (18%)

Query: 123 KHLSYLDLSFNDF--QGIQ-IPRFFGSM-GNLRYLNLSRTRIGGMIPHHLGNL-----SN 173
            +++ L+LS N    +    + +   ++   +  L+L                     ++
Sbjct: 80  ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPAS 139

Query: 174 LQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANC 233
           +  L+L  N L        +     L  + L ++                ++  L L   
Sbjct: 140 ITSLNLRGNDL-------GIKSSDELIQI-LAAIPA--------------NVNSLNLRGN 177

Query: 234 QLHHF------SLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGL-QNLTSLRHLG 286
            L           LA+   +S+T LDLS N              +          +  L 
Sbjct: 178 NLASKNCAELAKFLASIP-ASVTSLDLSANLLGLKSYAE-----LAYIFSSIPNHVVSLN 231

Query: 287 LDSNHFNSS----IPNWLYRFIHLEYLSLSNNSLQGTID------SEALGNLTSISWLDL 336
           L  N  +      +        HL+ + L  + ++            A  N+  I  +D 
Sbjct: 232 LCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDK 291

Query: 337 SLN-MGIEGRIPRSMA---SLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRS 392
           +   +     IP S             +L    L        +I    + + L       
Sbjct: 292 NGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTC 351

Query: 393 DSIYGH 398
             +  H
Sbjct: 352 KPLLEH 357

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 50.5 bits (121), Expect = 2e-06
 Identities = 45/317 (14%), Positives = 107/317 (33%), Gaps = 67/317 (21%)

Query: 350 MASLCNLKSLNLRGVHLSQE-ISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQF-- 406
            +    + SL+L   +L      E++  F+   ++ + SL+L  +S+    +D+L Q   
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPAS-VTSLNLSGNSLGFKNSDELVQILA 76

Query: 407 ---KNIVTLDFANNSI----VGLIPESLGQL-STLRVLRINDNKLNGTLSAIHFANL--- 455
               N+ +L+ + N +       + ++L  +  T+ VL +  N    + S+  F      
Sbjct: 77  AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF-SSKSSSEFKQAFSN 135

Query: 456 --TKLSWFRVDGNKLT-LGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLV 512
               ++   + GN L               +   L                 ++  L L 
Sbjct: 136 LPASITSLNLRGNDLGIKSSDE--------LIQILAAI------------PANVNSLNLR 175

Query: 513 NSSISDIFPIRFLKSA-----SQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGP 567
            ++++       L        + +  LDL  N +          +   +  ++S+     
Sbjct: 176 GNNLASKN-CAELAKFLASIPASVTSLDLSANLL-------GLKSYAELAYIFSSI---- 223

Query: 568 LPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDC------- 620
                +++V L+L  N   G     L    +  K L  + L+ + +     +        
Sbjct: 224 ----PNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAA 279

Query: 621 WMSYQNLKTLKLSNNKF 637
           + + Q +  +  +  + 
Sbjct: 280 FPNIQKIILVDKNGKEI 296

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 58/333 (17%), Positives = 111/333 (33%), Gaps = 84/333 (25%)

Query: 242 ATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLY 301
            T+    +T LDLS N                     L         +   +        
Sbjct: 17  FTSIPHGVTSLDLSLNNLY------------SISTVELIQ----AFANTPAS-------- 52

Query: 302 RFIHLEYLSLSNNSLQGTIDSEALG-----NLTSISWLDLSLNM----GIEGRIPRSMAS 352
               +  L+LS NSL G  +S+ L         +++ L+LS N       +  +    A 
Sbjct: 53  ----VTSLNLSGNSL-GFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAI 107

Query: 353 LCNLKSLNLRGVHLSQE-ISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQF----- 406
              +  L+L     S +  SE    FS   ++ + SL+LR + +    +D+L Q      
Sbjct: 108 PFTITVLDLGWNDFSSKSSSEFKQAFSNLPAS-ITSLNLRGNDLGIKSSDELIQILAAIP 166

Query: 407 KNIVTLDFANNSI----VGLIPESLGQL-STLRVLRINDNKLNGTLSAIHFA-----NLT 456
            N+ +L+   N++       + + L  + +++  L ++ N L G  S    A        
Sbjct: 167 ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLL-GLKSYAELAYIFSSIPN 225

Query: 457 KLSWFRVDGNKLT-LGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSS 515
            +    +  N L    ++         + L   +              KHLQ +YL    
Sbjct: 226 HVVSLNLCLNCLHGPSLE--------NLKLLKDSL-------------KHLQTVYLDYDI 264

Query: 516 ISDIFP------IRFLKSASQLKFLDLGQNQIH 542
           + ++             +  ++  +D    +IH
Sbjct: 265 VKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 49/303 (16%), Positives = 92/303 (30%), Gaps = 58/303 (19%)

Query: 422 LIPESLGQLSTLRVLRINDNKLNGTLSAIHFA-----NLTKLSWFRVDGNKLTL-GVKHD 475
            + E       +  L ++ N L  ++S +            ++   + GN L        
Sbjct: 13  PVEEFTSIPHGVTSLDLSLNNL-YSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDE- 70

Query: 476 WI------PPFQLVALGLRNCYVGSRFPLWL-----YSQKHLQFLYLVNSSISDIFPIRF 524
            +       P  + +L L   ++  +    L          +  L L  +  S       
Sbjct: 71  -LVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS-SSE 128

Query: 525 LKSA-----SQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLD 579
            K A     + +  L+L  N +               L          L  I +N+  L+
Sbjct: 129 FKQAFSNLPASITSLNLRGNDLGI--------KSSDELIQI-------LAAIPANVNSLN 173

Query: 580 LSNNLFSGSISPFLCYRI-NETKSLNALQLNDNYLNGE----LPDCWMSYQN-LKTLKLS 633
           L  N  +      L   + +   S+ +L L+ N L  +    L   + S  N + +L L 
Sbjct: 174 LRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLC 233

Query: 634 NNKFTG----NLPYSMGSLTSLVWLHLGENRLSG-------NILVSLKNCTALESLDVGE 682
            N   G    NL     SL  L  ++L  + +          +  +  N   +  +D   
Sbjct: 234 LNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNG 293

Query: 683 NEF 685
            E 
Sbjct: 294 KEI 296

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 43/192 (22%), Positives = 73/192 (38%), Gaps = 25/192 (13%)

Query: 151 RYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLS 210
              NL +  +   +  +   L+++  +  +++ +  V        L  + +L L    L 
Sbjct: 22  IKANLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGI---QYLPNVRYLALGGNKLH 76

Query: 211 K--AFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWV 268
              A        +L +L  L L   QL           ++L  L L +NQ     +P  V
Sbjct: 77  DISALK------ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS--LPDGV 128

Query: 269 FGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLY-RFIHLEYLSLSNNSLQGTIDSEALGN 327
           F         LT+L +L L  N    S+P  ++ +  +L  L LS N LQ ++       
Sbjct: 129 F-------DKLTNLTYLNLAHNQL-QSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDK 179

Query: 328 LTSISWLDLSLN 339
           LT +  L L  N
Sbjct: 180 LTQLKDLRLYQN 191

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 53/219 (24%), Positives = 82/219 (37%), Gaps = 40/219 (18%)

Query: 127 YLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGM--IPHHLGNLSNLQFLDLSSNYL 184
             +L                + ++  +  + + I  +  I +    L N+++L L  N L
Sbjct: 23  KANLKKKSVT--DAVTQNE-LNSIDQIIANNSDIKSVQGIQY----LPNVRYLALGGNKL 75

Query: 185 LYVDNFWWLSGLSFLEHLDLRSVNLSK----AFDWLMVTNKLPSLVELRLANCQLHHFSL 240
             +        L+ L +L L    L       FD      KL +L EL L   QL     
Sbjct: 76  HDISAL---KELTNLTYLILTGNQLQSLPNGVFD------KLTNLKELVLVENQLQSLPD 126

Query: 241 LATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWL 300
                 ++LT L+L+ NQ     +P  VF         LT+L  L L  N    S+P  +
Sbjct: 127 GVFDKLTNLTYLNLAHNQLQS--LPKGVF-------DKLTNLTELDLSYNQL-QSLPEGV 176

Query: 301 Y-RFIHLEYLSLSNNSLQ----GTIDSEALGNLTSISWL 334
           + +   L+ L L  N L+    G  D   L +L  I WL
Sbjct: 177 FDKLTQLKDLRLYQNQLKSVPDGVFDR--LTSLQYI-WL 212

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 51/194 (26%), Positives = 76/194 (39%), Gaps = 33/194 (17%)

Query: 117 PSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQF 176
             +  L ++ YL L  N    I        + NL YL L+  ++  +       L+NL+ 
Sbjct: 57  QGIQYLPNVRYLALGGNKLHDISA---LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113

Query: 177 LDLSSNYLLYVDN--FWWLSGLSFLEHLDLRSVNLSK----AFDWLMVTNKLPSLVELRL 230
           L L  N L  + +  F     L+ L +L+L    L       FD      KL +L EL L
Sbjct: 114 LVLVENQLQSLPDGVF---DKLTNLTYLNLAHNQLQSLPKGVFD------KLTNLTELDL 164

Query: 231 ANCQLHHFSLLATA--NFSSLTVLDLSDNQFDKWFIPSWVFGPIPRG-LQNLTSLRHLGL 287
           +  QL   SL        + L  L L  NQ             +P G    LTSL+++ L
Sbjct: 165 SYNQLQ--SLPEGVFDKLTQLKDLRLYQNQLKS----------VPDGVFDRLTSLQYIWL 212

Query: 288 DSNHFNSSIPNWLY 301
             N ++ + P   Y
Sbjct: 213 HDNPWDCTCPGIRY 226

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 59/211 (27%), Positives = 89/211 (42%), Gaps = 43/211 (20%)

Query: 117 PSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLG---NLSN 173
            +  +L  +  +  + +D + +Q       + N+RYL L   ++     H +     L+N
Sbjct: 35  VTQNELNSIDQIIANNSDIKSVQG---IQYLPNVRYLALGGNKL-----HDISALKELTN 86

Query: 174 LQFLDLSSNYLLYVDN--FWWLSGLSFLEHLDLRSVNLSK----AFDWLMVTNKLPSLVE 227
           L +L L+ N L  + N  F     L+ L+ L L    L       FD      KL +L  
Sbjct: 87  LTYLILTGNQLQSLPNGVF---DKLTNLKELVLVENQLQSLPDGVFD------KLTNLTY 137

Query: 228 LRLANCQLHHFSLLATANFSSLT---VLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRH 284
           L LA+ QL     L    F  LT    LDLS NQ     +P  VF         LT L+ 
Sbjct: 138 LNLAHNQL---QSLPKGVFDKLTNLTELDLSYNQLQS--LPEGVF-------DKLTQLKD 185

Query: 285 LGLDSNHFNSSIPNWLY-RFIHLEYLSLSNN 314
           L L  N    S+P+ ++ R   L+Y+ L +N
Sbjct: 186 LRLYQNQLK-SVPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 38/177 (21%), Positives = 71/177 (40%), Gaps = 26/177 (14%)

Query: 571 ISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTL 630
             +  +  +L     +           NE  S++ +  N++ +            N++ L
Sbjct: 17  AFAETIKANLKKKSVT-DAVTQ-----NELNSIDQIIANNSDIKSVQG--IQYLPNVRYL 68

Query: 631 KLSNNKFTGNLPYSMG---SLTSLVWLHLGENRLS---GNILVSLKNCTALESLDVGENE 684
            L  NK        +     LT+L +L L  N+L      +   L   T L+ L + EN+
Sbjct: 69  ALGGNKLH-----DISALKELTNLTYLILTGNQLQSLPNGVFDKL---TNLKELVLVENQ 120

Query: 685 FVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCD-LAFLQILDIADNNLSGAIPN 740
              ++P  + ++ + +  L L  N+    LP G+ D L  L  LD++ N L  ++P 
Sbjct: 121 LQ-SLPDGVFDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQ-SLPE 174

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 56.6 bits (137), Expect = 4e-09
 Identities = 39/167 (23%), Positives = 63/167 (37%), Gaps = 27/167 (16%)

Query: 153 LNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKA 212
           L+     I   +   L  L   + L LS+N +  + +   LSG+  L  L L   NL K 
Sbjct: 30  LHGMIPPIEK-MDATLSTLKACKHLALSTNNIEKISS---LSGMENLRILSL-GRNLIKK 84

Query: 213 FDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPI 272
            + L       +L EL ++  Q+   S +      +L VL +S+N+   W          
Sbjct: 85  IENL--DAVADTLEELWISYNQIASLSGI--EKLVNLRVLYMSNNKITNW--------GE 132

Query: 273 PRGLQNLTSLRHLGLDSN------HFNSSIPNW----LYRFIHLEYL 309
              L  L  L  L L  N        N++   +    + R  +L+ L
Sbjct: 133 IDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 12/118 (10%)

Query: 119 LLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLD 178
           L  +++L  L L  N  +  +I         L  L +S  +I  +    +  L NL+ L 
Sbjct: 66  LSGMENLRILSLGRNLIK--KIENLDAVADTLEELWISYNQIASL--SGIEKLVNLRVLY 121

Query: 179 LSSNYLLYVDNFWWLSGLSFLEHLDL--------RSVNLSKAFDWLMVTNKLPSLVEL 228
           +S+N +        L+ L  LE L L           N + +   + V  +LP+L +L
Sbjct: 122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 35/161 (21%), Positives = 61/161 (37%), Gaps = 12/161 (7%)

Query: 320 IDSEALGNLTSISWLDLSLNM-GIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFS 378
            +       T    ++L   +  IE ++  ++++L   K L L        I +I  + S
Sbjct: 14  FEERKSVVATEAEKVELHGMIPPIE-KMDATLSTLKACKHLALST----NNIEKISSL-S 67

Query: 379 GCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRI 438
           G  +  L  L L  + I   + +       +  L  + N I  L    + +L  LRVL +
Sbjct: 68  GMEN--LRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEKLVNLRVLYM 122

Query: 439 NDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPP 479
           ++NK+         A L KL    + GN L    K +    
Sbjct: 123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATS 163

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 30/145 (20%), Positives = 51/145 (35%), Gaps = 33/145 (22%)

Query: 500 LYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLL-ILS 558
           L + K  + L L  ++I  I  +  ++    L+ L LG+N I   I NL      L  L 
Sbjct: 44  LSTLKACKHLALSTNNIEKISSLSGME---NLRILSLGRNLIKK-IENLDAVADTLEELW 99

Query: 559 VYSNNMSGPLPLIS-SNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGEL 617
           +  N ++    +    NL  L +SNN            +I     ++ L           
Sbjct: 100 ISYNQIASLSGIEKLVNLRVLYMSNN------------KITNWGEIDKLA---------- 137

Query: 618 PDCWMSYQNLKTLKLSNNKFTGNLP 642
                +   L+ L L+ N    +  
Sbjct: 138 -----ALDKLEDLLLAGNPLYNDYK 157

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 55.8 bits (135), Expect = 4e-09
 Identities = 29/110 (26%), Positives = 44/110 (40%), Gaps = 7/110 (6%)

Query: 149 NLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVN 208
             R L+L   +I  +I +    L     +D S N +  +D       L  L+ L + +  
Sbjct: 20  RDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDG---FPLLRRLKTLLVNNNR 75

Query: 209 LSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLAT-ANFSSLTVLDLSDN 257
           + +  + L     LP L EL L N  L     L   A+  SLT L +  N
Sbjct: 76  ICRIGEGL--DQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 4/108 (3%)

Query: 122 LKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSS 181
           L     +D S N+ + +     F  +  L+ L ++  RI  +       L +L  L L++
Sbjct: 41  LDQFDAIDFSDNEIRKLD---GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN 97

Query: 182 NYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFD-WLMVTNKLPSLVEL 228
           N L+ + +   L+ L  L +L +    ++      L V  K+P +  L
Sbjct: 98  NSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVL 145

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 28/120 (23%), Positives = 43/120 (35%), Gaps = 12/120 (10%)

Query: 220 NKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNL 279
                  EL L   ++     L  A       +D SDN+  K             G   L
Sbjct: 16  TNAVRDRELDLRGYKIPVIENL-GATLDQFDAIDFSDNEIRKL-----------DGFPLL 63

Query: 280 TSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLN 339
             L+ L +++N               L  L L+NNSL    D + L +L S+++L +  N
Sbjct: 64  RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 27/136 (19%), Positives = 52/136 (38%), Gaps = 11/136 (8%)

Query: 334 LDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSD 393
           + L+  + IE +      +    + L+LRG     +I  I ++ +       +++D   +
Sbjct: 2   VKLTAEL-IE-QAA-QYTNAVRDRELDLRG----YKIPVIENLGATLDQ--FDAIDFSDN 52

Query: 394 SIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFA 453
            I     D     + + TL   NN I  +       L  L  L + +N L         A
Sbjct: 53  EI--RKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLA 110

Query: 454 NLTKLSWFRVDGNKLT 469
           +L  L++  +  N +T
Sbjct: 111 SLKSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 26/115 (22%), Positives = 40/115 (34%), Gaps = 8/115 (6%)

Query: 573 SNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKL 632
                LDL        I              +A+  +DN +  +L D +   + LKTL +
Sbjct: 19  VRDRELDLRGYKIP-VIENLGATL----DQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLV 71

Query: 633 SNNKFTGNLPYSMGSLTSLVWLHLGENRLSG-NILVSLKNCTALESLDVGENEFV 686
           +NN+          +L  L  L L  N L     L  L +  +L  L +  N   
Sbjct: 72  NNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 2/77 (2%)

Query: 801 RNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESM 860
           R      I      L    +++FS N    ++ +   ++R L+++  + N++        
Sbjct: 27  RGYKIPVIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICRIGEGLD 84

Query: 861 SSLTFLNHLNLSNNNLT 877
            +L  L  L L+NN+L 
Sbjct: 85  QALPDLTELILTNNSLV 101

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 57.8 bits (139), Expect = 6e-09
 Identities = 19/101 (18%), Positives = 32/101 (31%), Gaps = 11/101 (10%)

Query: 193 LSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVL 252
           L G   L  L + +    +  +   +   L  L  L +    L   +  A      L+ L
Sbjct: 27  LPGAENLTELYIENQQHLQHLELRDLRG-LGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85

Query: 253 DLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFN 293
           +LS N  +           +        SL+ L L  N  +
Sbjct: 86  NLSFNALES----------LSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 53.6 bits (128), Expect = 1e-07
 Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 4/96 (4%)

Query: 272 IPRGLQNLTSLRHLGLDSNHFNSSIPNW-LYRFIHLEYLSLSNNSLQGTIDSEALGNLTS 330
               L    +L  L +++      +    L     L  L++  + L+  +  +A      
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPR 81

Query: 331 ISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHL 366
           +S L+LS N  +E  +        +L+ L L G  L
Sbjct: 82  LSRLNLSFNA-LE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.9 bits (121), Expect = 1e-06
 Identities = 25/150 (16%), Positives = 38/150 (25%), Gaps = 23/150 (15%)

Query: 138 IQIPRFFGSMGNLRYLNLSRTRIGGMIP-HHLGNLSNLQFLDLSSNYLLYVDN--FWWLS 194
           +          NL  L +   +    +    L  L  L+ L +  + L +V    F    
Sbjct: 21  LDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF---H 77

Query: 195 GLSFLEHLDLRSVNLS----KAFDWLMVTNKLPSLVELRLAN------CQLHHFSLLATA 244
               L  L+L    L     K    L       SL EL L+       C L         
Sbjct: 78  FTPRLSRLNLSFNALESLSWKTVQGL-------SLQELVLSGNPLHCSCALRWLQRWEEE 130

Query: 245 NFSSLTVLDLSDNQFDKWFIPSWVFGPIPR 274
               +    L  +              +P 
Sbjct: 131 GLGGVPEQKLQCHGQGPLAHMPNASCGVPT 160

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.5 bits (120), Expect = 1e-06
 Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 10/96 (10%)

Query: 115 INPSLLDLKHLSYLDLSFNDFQGIQI--PRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLS 172
               L   ++L+ L +     Q +Q    R    +G LR L + ++ +  + P       
Sbjct: 23  SLHHLPGAENLTELYIENQ--QHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP 80

Query: 173 NLQFLDLSSNYL--LYVDNFWWLSGLSFLEHLDLRS 206
            L  L+LS N L  L       LS    L+ L L  
Sbjct: 81  RLSRLNLSFNALESLSWKTVQGLS----LQELVLSG 112

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.3 bits (109), Expect = 3e-05
 Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 15/105 (14%)

Query: 235 LHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNS 294
           LHH          +LT L + + Q     +            + L  LR+L +  +    
Sbjct: 24  LHHLPGA-----ENLTELYIENQQ-HLQHLELRDL-------RGLGELRNLTIVKSGLRF 70

Query: 295 SIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLN 339
             P+  +    L  L+LS N+L+ ++  + +  L S+  L LS N
Sbjct: 71  VAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGL-SLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.6 bits (102), Expect = 2e-04
 Identities = 13/82 (15%), Positives = 27/82 (32%), Gaps = 2/82 (2%)

Query: 797 IDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIP-ESIGVMRSLESIDFSANQLSGE 855
           +  +R+         +   + L  L          +    +  +  L ++    + L   
Sbjct: 13  LRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV 71

Query: 856 IPESMSSLTFLNHLNLSNNNLT 877
            P++      L+ LNLS N L 
Sbjct: 72  APDAFHFTPRLSRLNLSFNALE 93

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 58.4 bits (141), Expect = 7e-09
 Identities = 64/484 (13%), Positives = 136/484 (28%), Gaps = 86/484 (17%)

Query: 118 SLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFL 177
               +   +   ++          R      NLR L L       M      NL    + 
Sbjct: 43  RWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMF-----NLIPENWG 97

Query: 178 DLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANC-QLH 236
              + ++  +      + L  L+ +  R + +S      +   +   L  L+L  C    
Sbjct: 98  GYVTPWVTEI-----SNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFT 152

Query: 237 HFSLLA-TANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFN-S 294
              LL+   +   +  L + ++ F +          + +   +L  L     +    +  
Sbjct: 153 TDGLLSIVTHCRKIKTLLMEESSFSE--KDGKWLHELAQHNTSLEVLNFYMTEFAKISPK 210

Query: 295 SIPNWLYRFIHLEYLSLSNNSL----------------------QGTIDSEALGNLTSIS 332
            +         L  + + +  +                      +     E   NL    
Sbjct: 211 DLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR 270

Query: 333 WLDLSLNMGIEGRIPRSMASLC-NLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLR 391
            L       +       +      ++ L+L    L  E  +   +   C +  LE L+ R
Sbjct: 271 KLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETE--DHCTLIQKCPN--LEVLETR 326

Query: 392 SDSIYGHLTD----QLGQF-KNIVTLDFANNSIVGLIPESLGQLS------------TLR 434
                  + D     L Q+ K +  L     +    + +  G +S             L 
Sbjct: 327 -----NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELE 381

Query: 435 VLRINDNKL-NGTLSAI--HFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCY 491
            + +  + + N +L +I  +  NL       +D  +    +  D       V   L  C 
Sbjct: 382 YMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD-----NGVRSLLIGCK 436

Query: 492 VGSRFPLWLYSQ--------------KHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLG 537
              RF  +L                  +++++ L     SD   + F +    L+ L++ 
Sbjct: 437 KLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMR 496

Query: 538 QNQI 541
               
Sbjct: 497 GCCF 500

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 56.9 bits (137), Expect = 2e-08
 Identities = 43/293 (14%), Positives = 86/293 (29%), Gaps = 34/293 (11%)

Query: 122 LKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIG-GMIPHHLGNLSNLQFLDLS 180
             +L        +       ++   +   +   L  + +G   +P      + ++ LDL 
Sbjct: 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLL 301

Query: 181 SNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSL 240
              L   D+   +     LE L+ R+V   +  + L        L  LR+          
Sbjct: 302 YALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVL--AQYCKQLKRLRIERGADEQGME 359

Query: 241 LATANFS------------SLTVLDLSDNQF-DKWFIPSWVFGPIPRGLQNLTSLRHLGL 287
                 S             L  + +  +   ++          I   L+NL   R + L
Sbjct: 360 DEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLE------SIGTYLKNLCDFRLVLL 413

Query: 288 DSNH------FNSSIPNWLYRFIHLEYLSLSNNSLQGTIDS-EALG-NLTSISWLDLSLN 339
           D          ++ + + L     L   +        T      +G    ++ W+ L   
Sbjct: 414 DREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV 473

Query: 340 MGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRS 392
              +  +        NL+ L +RG   S+    I    +   S  L  L ++ 
Sbjct: 474 GESDEGLMEFSRGCPNLQKLEMRGCCFSER--AIAAAVTKLPS--LRYLWVQG 522

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 51.5 bits (123), Expect = 1e-06
 Identities = 56/453 (12%), Positives = 118/453 (26%), Gaps = 87/453 (19%)

Query: 118 SLLDLKHLSYLDLSF-NDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLG----NLS 172
           +      L  L L   + F    +         ++ L +  +         L     + +
Sbjct: 133 AKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNT 192

Query: 173 NLQFLDLSSNYLLYVDN---FWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELR 229
           +L+ L+        +              L  + +    + +   +      L       
Sbjct: 193 SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGS 252

Query: 230 LANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDS 289
           L          +       L  L LS                 P  +  L          
Sbjct: 253 LNEDIGMPEKYMNLVFPRKLCRLGLSYMG--------------PNEMPILFPFAA----- 293

Query: 290 NHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRS 349
                           +  L L    L+       +    ++  L+    +G  G     
Sbjct: 294 ---------------QIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGL--EV 336

Query: 350 MASLC-NLKSLNLRGVHLSQEISE---------ILDIFSGCVSNGLESLDLRSDSIYGHL 399
           +A  C  LK L +      Q + +         ++ +  GC    LE + +    I    
Sbjct: 337 LAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQE--LEYMAVYVSDI---- 390

Query: 400 TDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVL------RINDNKLNGTLSAI--H 451
           T++               S+  +    L  L   R++      RI D  L+  + ++   
Sbjct: 391 TNE---------------SLESIG-TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIG 434

Query: 452 FANLTKLSWFRVDGNKLT-LGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQ-KHLQFL 509
              L + + F +    LT LG+ +       +  + L          +       +LQ L
Sbjct: 435 CKKLRRFA-FYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKL 493

Query: 510 YLVNSSISDIFPIRFLKSASQLKFLDLGQNQIH 542
            +     S+      +     L++L +   +  
Sbjct: 494 EMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 57.2 bits (138), Expect = 1e-08
 Identities = 50/260 (19%), Positives = 88/260 (33%), Gaps = 31/260 (11%)

Query: 71  CCAWAGVFCDNITGHVLHLDLRNPFNYHKESEYEAIRRTALVGKINPSLLDL-------- 122
           C  W  +  D      L L  +N    H +     + +  +  +   S +D         
Sbjct: 36  CKRWYRLASDESLWQTLDLTGKN---LHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSP 92

Query: 123 KHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSN 182
             + ++DLS +  +   +         L+ L+L   R+   I + L   SNL  L+LS  
Sbjct: 93  FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC 152

Query: 183 YLLYVDNFWWL-SGLSFLEHLDLRS-VNLSKAFDWLMVTNKLPSLVELRLANCQL----H 236
                     L S  S L+ L+L    + ++    + V +   ++ +L L+  +      
Sbjct: 153 SGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS 212

Query: 237 HFSLLATANFSSLTVLDLSDNQF--DKWFIPSWVFGPIPRGLQNLTSLRHLGLDS-NHFN 293
             S L      +L  LDLSD+    +  F          +    L  L+HL L       
Sbjct: 213 DLSTLVR-RCPNLVHLDLSDSVMLKNDCF----------QEFFQLNYLQHLSLSRCYDII 261

Query: 294 SSIPNWLYRFIHLEYLSLSN 313
                 L     L+ L +  
Sbjct: 262 PETLLELGEIPTLKTLQVFG 281

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 55.3 bits (133), Expect = 4e-08
 Identities = 36/239 (15%), Positives = 76/239 (31%), Gaps = 25/239 (10%)

Query: 163 MIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKL 222
           + P   G L +   +                     ++H+DL +  +  +     + ++ 
Sbjct: 59  LHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS-TLHGILSQC 117

Query: 223 PSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSL 282
             L  L L   +L    +   A  S+L  L+LS           +    +      L  L
Sbjct: 118 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG----FSEFALQTLLSSCSRLDEL 173

Query: 283 RHLG----LDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALG----NLTSISWL 334
            +L         H   ++ +       +  L+LS    +  +    L        ++  L
Sbjct: 174 -NLSWCFDFTEKHVQVAVAHVS---ETITQLNLSG--YRKNLQKSDLSTLVRRCPNLVHL 227

Query: 335 DLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEI-LDIFSGCVSNGLESLDLRS 392
           DLS ++ ++    +    L  L+ L+L   +    I    L       +  L++L +  
Sbjct: 228 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD---IIPETLLELGEIPT--LKTLQVFG 281

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.4 bits (135), Expect = 4e-08
 Identities = 73/528 (13%), Positives = 156/528 (29%), Gaps = 154/528 (29%)

Query: 475 DWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISD---IFPIRFLKSASQL 531
           D +  F+   +   +C      P  + S++ +  + +   ++S    +F     K    +
Sbjct: 20  DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV 79

Query: 532 K-FLD--LGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGS 588
           + F++  L  N          +F    ++S        P  +      +++  + L++ +
Sbjct: 80  QKFVEEVLRINY---------KF----LMSPIKTEQRQPSMMTRM---YIEQRDRLYNDN 123

Query: 589 --ISPFLCYRINETKSL-NAL-QLNDN---YLNGELPDCWMS---YQNLKTLKLSNNKFT 638
              + +   R+     L  AL +L       ++G      +       +      + K  
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG------VLGSGKTWVALDVCLSYKVQ 177

Query: 639 GNLPYSMGSLTSLVWLHLGENRLSGNILVSLKN-CTALESLDVGENEFVGNIPT---WIG 694
             + + +       WL+L        +L  L+     ++      ++   NI      I 
Sbjct: 178 CKMDFKI------FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231

Query: 695 ERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILD-IADNNLSGAIPNCINNLTG----MV 749
               R    +L+S  +       L  L    +L  + +           N        ++
Sbjct: 232 AELRR----LLKSKPY----ENCL--L----VLLNVQN-------AKAWNAFNLSCKILL 270

Query: 750 TACSFTR--SVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGK 807
           T    TR   V  +L       + L   +  ++  E+        L++ +D         
Sbjct: 271 T----TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL-----LLKYLDCR----PQD 317

Query: 808 IPLEV--TNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTF 865
           +P EV  TN + L S+          I ESI    +    D   +    ++   + S   
Sbjct: 318 LPREVLTTNPRRL-SI----------IAESIRDGLAT--WDNWKHVNCDKLTTIIES--S 362

Query: 866 LNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLCGAPLPKNCTENVSISE--------D 917
           LN L           P+  + + FD        L  +  P     +  I          D
Sbjct: 363 LNVLE----------PAEYR-KMFD-------RL--SVFP----PSAHIPTILLSLIWFD 398

Query: 918 ENGDEDEDEVDHWLYVSAALGFVVGFWCFMGPLLVRRRWRYKYY-HSL 964
               +    V+     S               L+ ++         S+
Sbjct: 399 VIKSDVMVVVNKLHKYS---------------LVEKQPKESTISIPSI 431

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 6e-08
 Identities = 92/586 (15%), Positives = 175/586 (29%), Gaps = 170/586 (29%)

Query: 103 YEAIRRTALVGKINPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGG 162
              I+         PS++   ++   D  +ND Q                 N+SR     
Sbjct: 95  MSPIKTEQ----RQPSMMTRMYIEQRDRLYNDNQ------------VFAKYNVSR----- 133

Query: 163 MIPHHLGNLSN-LQFLDLSSNYLLYVDNFWWLSGL-----SFLEHLDLRSVNLSKAFD-- 214
                   L   L  L  + N L+         G+     +++      S  +    D  
Sbjct: 134 --LQPYLKLRQALLELRPAKNVLID--------GVLGSGKTWVALDVCLSYKVQCKMDFK 183

Query: 215 --WLMVTNKLPSLVELRLANCQ--LHHFSLLATANFSSLTVLDLSDNQFDKW---FIPSW 267
             WL + N   +  E  L   Q  L+      T+     + + L  +         + S 
Sbjct: 184 IFWLNLKNC--NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241

Query: 268 VFGPIPRGL---QNLTSLRHLGLDSNHFN-----------SSIPNWLYRFIHLEYLSLSN 313
            +      L    N+ + +      N FN             + ++L       ++SL +
Sbjct: 242 PY---ENCLLVLLNVQNAKAW----NAFNLSCKILLTTRFKQVTDFL-SAATTTHISLDH 293

Query: 314 NSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEIS-- 371
           +S       E    L  + +LD          +PR      N + L++    +   ++  
Sbjct: 294 HS-MTLTPDEVKSLL--LKYLDCRPQD-----LPRE-VLTTNPRRLSIIAESIRDGLATW 344

Query: 372 ---------EILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFK---NI--VTLD-FAN 416
                    ++  I    ++  LE  + R       + D+L  F    +I  + L     
Sbjct: 345 DNWKHVNCDKLTTIIESSLNV-LEPAEYR------KMFDRLSVFPPSAHIPTILLSLIWF 397

Query: 417 NSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDW 476
           + I   +   + +L    ++     +   ++ +I+     KL       N+  L   H  
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE------NEYAL---HR- 447

Query: 477 IPPFQLVALGLRNCYVGSR-FPLWLYSQKHLQ---FLYLV-------NSSISDIFPIRFL 525
                +V     + Y   + F        +L    + ++        +     +F + FL
Sbjct: 448 ----SIV-----DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL 498

Query: 526 KSASQLKFLDLGQNQI---------HGPIPNLTEFTGLLILSVYSNNMSGPLP----LIS 572
                 +FL   + +I          G I N      L  L  Y   +    P    L++
Sbjct: 499 ----DFRFL---EQKIRHDSTAWNASGSILNT-----LQQLKFYKPYICDNDPKYERLVN 546

Query: 573 SNLVFL-DLSNNLFSGSISPFLC-YRINETKSLNALQLNDNYLNGE 616
           + L FL  +  NL     S +    RI       AL   D  +  E
Sbjct: 547 AILDFLPKIEENLI---CSKYTDLLRI-------ALMAEDEAIFEE 582

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 2e-04
 Identities = 92/661 (13%), Positives = 174/661 (26%), Gaps = 231/661 (34%)

Query: 361 LRGVHLSQEISEILD----------IFSGCVSNGLESLD------LRSDSIYGHLTDQLG 404
            + +   +EI  I+           +F   +S   E +       LR +  Y  L   + 
Sbjct: 42  PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN--YKFLMSPIK 99

Query: 405 QFKN---------IVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANL 455
             +          I   D   N        ++ +L     LR     L           L
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR---QAL---------LEL 147

Query: 456 TKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFP---LWL-YSQKH------ 505
                  +DG    LG    W     +      +  V  +      WL     +      
Sbjct: 148 RPAKNVLIDG---VLGSGKTW-----VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199

Query: 506 --LQFLYLV-----NSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILS 558
             LQ L         S       I+    + Q +   L +++ +    N      LL+L 
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY---EN-----CLLVLL 251

Query: 559 VYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELP 618
                               ++ N                  K+ NA  L+         
Sbjct: 252 --------------------NVQN-----------------AKAWNAFNLS--------- 265

Query: 619 DCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESL 678
            C       K L  +  K           +T  +      +    +  ++L   T  E  
Sbjct: 266 -C-------KILLTTRFK----------QVTDFLSAATTTHISLDHHSMTL---TPDEVK 304

Query: 679 DVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADN------ 732
            +     +     ++  R   +   +L +N    P    +   +    L   DN      
Sbjct: 305 SL----LL----KYLDCRPQDLPREVLTTN----PRRLSIIAESIRDGLATWDNWKHVNC 352

Query: 733 -NLSGAIPNCINNLT-----GMVTACS-FTRSVQQYLPLPIDVGVILVEKASVVSKGEMV 785
             L+  I + +N L       M    S F  S      +P  +  ++             
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA----HIPTILLSLIWF------DVIKS 402

Query: 786 DYEDILN-LVRMIDISRNNFSGKIPL---------EVTNLKAL-QSLNFSYNSFTGRIPE 834
           D   ++N L +   + +      I +         ++ N  AL +S+   YN        
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN-------- 454

Query: 835 SIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHL--NLSNNNLTGKIPSSTQL-QSFDV 891
              + ++ +S D     L            F +H+  +L N     ++     +   F  
Sbjct: 455 ---IPKTFDSDDLIPPYLDQ---------YFYSHIGHHLKNIEHPERMTLFRMVFLDFR- 501

Query: 892 SSFAGNDLCGAPLPKNCTENVS------------ISEDENGDEDEDEVDHWLYVSAALGF 939
             F    +       N + ++             I +++   E          V+A L F
Sbjct: 502 --FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE--------RLVNAILDF 551

Query: 940 V 940
           +
Sbjct: 552 L 552

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 53.6 bits (129), Expect = 2e-07
 Identities = 55/304 (18%), Positives = 100/304 (32%), Gaps = 37/304 (12%)

Query: 171 LSNLQFLDLSSNYLLYVD----NFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLV 226
           LS+L+ L+L+   +  V          SG   L+ ++L S  L  A     +        
Sbjct: 71  LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPA-GLRTLLPVFLRAR 129

Query: 227 ELRLANCQL-----HHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTS 281
           +L L    L          L   +   +T L LS+N      + +     +  GL   TS
Sbjct: 130 KLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNP-----LTAAGVAVLMEGLAGNTS 184

Query: 282 LRHLGLDSNHFN----SSIPNWLYRFIHLEYLSLSNNSL--QGTID-SEALGNLTSISWL 334
           + HL L            +   L R   L+ L+++ N       +  + A     S+  L
Sbjct: 185 VTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELL 244

Query: 335 DLSLN-MGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSD 393
            L  N +  EGR  + +  L        R V    E + + + +S  +S    +L+    
Sbjct: 245 HLYFNELSSEGR--QVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNS--- 299

Query: 394 SIYGHLTDQLGQFKNIVTLDFANNSI----VGLIPESLGQLSTLRVLRINDNKLNGTLSA 449
                   ++ +   ++  D  ++           + L     +R L        G+ S 
Sbjct: 300 ----WDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSS-GSPSG 354

Query: 450 IHFA 453
               
Sbjct: 355 SWSH 358

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 51.6 bits (124), Expect = 8e-07
 Identities = 52/286 (18%), Positives = 87/286 (30%), Gaps = 55/286 (19%)

Query: 169 GNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLS----KAFDWLMVTNKLPS 224
             L   + LD    +  + +  +    LS L  L+L  V ++         ++ + +  +
Sbjct: 44  QVLPPSELLDHLFFHYEFQNQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGR-HA 102

Query: 225 LVELRLANCQLHHFSL--LATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSL 282
           L E+ LA+CQL    L  L          L L  N               P   ++L   
Sbjct: 103 LDEVNLASCQLDPAGLRTLLPVF-LRARKLGLQLNSLG------------PEACKDLRD- 148

Query: 283 RHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQ--GTID-SEALGNLTSISWLDLSLN 339
               L  +               +  L LSNN L   G     E L   TS++ L L   
Sbjct: 149 ---LLLHDQ------------CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT 193

Query: 340 M-GIEG--RIPRSMASLCNLKSLNLRGVHLS----QEISEILDIFSGCVSNGLESLDLRS 392
             G EG   +   +     L+ LN+            ++             LE L L  
Sbjct: 194 GLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAR-----EHPSLELLHLYF 248

Query: 393 DSI----YGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLR 434
           + +       L D  G  +    +  +      +       LS ++
Sbjct: 249 NELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQ 294

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 39/285 (13%), Positives = 92/285 (32%), Gaps = 56/285 (19%)

Query: 305 HLEYLSLSNNSLQGTIDSEALG-----NLTSISWLDLSLNM-GIEGRIPRSMAS-LCNLK 357
            L  L+L+   +   +    +         ++  ++L+       G   R++       +
Sbjct: 73  SLRQLNLAGVRM-TPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGL--RTLLPVFLRAR 129

Query: 358 SLNLRGVHLS----QEISEILDIFSGCVSNGLESLDLRSDSI----YGHLTDQLGQFKNI 409
            L L+   L     +++ ++L +   C    + +L L ++ +       L + L    ++
Sbjct: 130 KLGLQLNSLGPEACKDLRDLL-LHDQCQ---ITTLRLSNNPLTAAGVAVLMEGLAGNTSV 185

Query: 410 VTLDFANNSI----VGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANL----TKLSWF 461
             L   +  +    + L+   L +   L+ L +  N   G  +A+  A        L   
Sbjct: 186 THLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA-GDTAALALARAAREHPSLELL 244

Query: 462 RVDGNKLT-LGVKH------DWIPPFQLVALGLRNCYVG-------------SRFPLWLY 501
            +  N+L+  G +             ++V        V                      
Sbjct: 245 HLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRAR 304

Query: 502 SQKHLQFLY--LVNSSISDIFPI---RFLKSASQLKFLDLGQNQI 541
            Q+HL+ L   L +S  + + P    + L+   +++ L       
Sbjct: 305 VQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSS 349

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 42.0 bits (99), Expect = 7e-04
 Identities = 36/249 (14%), Positives = 73/249 (29%), Gaps = 40/249 (16%)

Query: 502 SQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYS 561
            +  L  + L +  +        L    + + L L  N +              +  +  
Sbjct: 99  GRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSL-------GPEACKDLRDLLL 151

Query: 562 NNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGE----L 617
           ++           +  L LSNN  + +    L   +    S+  L L    L  E    L
Sbjct: 152 HD--------QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELL 203

Query: 618 PDCWMSYQNLKTLKLSNNKFTGN----LPYSMGSLTSLVWLHLGENRLS-------GNIL 666
                  + L+ L ++ N         L  +     SL  LHL  N LS        ++ 
Sbjct: 204 AAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLG 263

Query: 667 VSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQI 726
            + +    +                 + E +S ++  + R+          +     L +
Sbjct: 264 GAAEGGARVVVSLTEGTA--------VSEYWSVILSEVQRNLNSW--DRARVQRHLELLL 313

Query: 727 LDIADNNLS 735
            D+ D+  +
Sbjct: 314 RDLEDSRGA 322

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 26/117 (22%), Positives = 48/117 (41%), Gaps = 17/117 (14%)

Query: 227 ELRLANCQLHHFSLLATANFSS---LTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLR 283
           EL L + +L    + +   F     L  L+L  NQ     I    F       +  + ++
Sbjct: 33  ELLLNDNELG--RISSDGLFGRLPHLVKLELKRNQLTG--IEPNAF-------EGASHIQ 81

Query: 284 HLGLDSNHFNSSIPNWLY-RFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLN 339
            L L  N     I N ++     L+ L+L +N +   +   +  +L S++ L+L+ N
Sbjct: 82  ELQLGENKI-KEISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 32/124 (25%), Positives = 47/124 (37%), Gaps = 21/124 (16%)

Query: 175 QFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSK----AFDWLMVTNKLPSLVELRL 230
             L L+ N L  + +      L  L  L+L+   L+     AF+          + EL+L
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE------GASHIQELQL 85

Query: 231 ANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRG-LQNLTSLRHLGLDS 289
              ++   S         L  L+L DNQ     I       +  G  ++L SL  L L S
Sbjct: 86  GENKIKEISNKMFLGLHQLKTLNLYDNQ-----ISC-----VMPGSFEHLNSLTSLNLAS 135

Query: 290 NHFN 293
           N FN
Sbjct: 136 NPFN 139

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 31/134 (23%), Positives = 54/134 (40%), Gaps = 27/134 (20%)

Query: 127 YLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLY 186
            L L+ N+   I     FG + +L  L L R ++ G+ P+     S++Q L L  N    
Sbjct: 33  ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN---- 88

Query: 187 VDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANF 246
                            ++ ++ +K F        L  L  L L + Q+      +  + 
Sbjct: 89  ----------------KIKEIS-NKMFL------GLHQLKTLNLYDNQISCVMPGSFEHL 125

Query: 247 SSLTVLDLSDNQFD 260
           +SLT L+L+ N F+
Sbjct: 126 NSLTSLNLASNPFN 139

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 48/181 (26%), Positives = 68/181 (37%), Gaps = 27/181 (14%)

Query: 128 LDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYL--L 185
           LDL       +     F  +  L +LNL   ++  +      +L+ L  L L++N L  L
Sbjct: 40  LDLQSTGLATLS-DATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98

Query: 186 YVDNFWWLSGLSFLEHLDLRSVNLSK----AFDWLMVTNKLPSLVELRLANCQLHHFSLL 241
            +  F     L+ L+ L L    L       FD      +L  L ELRL   QL      
Sbjct: 99  PLGVF---DHLTQLDKLYLGGNQLKSLPSGVFD------RLTKLKELRLNTNQLQSIPAG 149

Query: 242 ATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRG-LQNLTSLRHLGLDSNHFNSSIPNWL 300
           A    ++L  L LS NQ             +P G    L  L+ + L  N F+ S    L
Sbjct: 150 AFDKLTNLQTLSLSTNQLQS----------VPHGAFDRLGKLQTITLFGNQFDCSRCEIL 199

Query: 301 Y 301
           Y
Sbjct: 200 Y 200

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 39/145 (26%), Positives = 59/145 (40%), Gaps = 16/145 (11%)

Query: 122 LKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSS 181
           L  L++L+L +N  Q +     F  +  L  L L+  ++  +      +L+ L  L L  
Sbjct: 58  LTKLTWLNLDYNQLQTLS-AGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGG 116

Query: 182 NYLLYVDN--FWWLSGLSFLEHLDLRSVNLSK----AFDWLMVTNKLPSLVELRLANCQL 235
           N L  + +  F     L+ L+ L L +  L      AFD      KL +L  L L+  QL
Sbjct: 117 NQLKSLPSGVF---DRLTKLKELRLNTNQLQSIPAGAFD------KLTNLQTLSLSTNQL 167

Query: 236 HHFSLLATANFSSLTVLDLSDNQFD 260
                 A      L  + L  NQFD
Sbjct: 168 QSVPHGAFDRLGKLQTITLFGNQFD 192

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 12/114 (10%)

Query: 227 ELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLG 286
           +L L +  L   S       + LT L+L  NQ     + + VF        +LT L  LG
Sbjct: 39  KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT--LSAGVF-------DDLTELGTLG 89

Query: 287 LDSNHFNSSIPNWLY-RFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLN 339
           L +N   +S+P  ++     L+ L L  N L+ ++ S     LT +  L L+ N
Sbjct: 90  LANNQL-ASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTN 141

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 42/144 (29%), Positives = 63/144 (43%), Gaps = 21/144 (14%)

Query: 200 EHLDLRSVNLSK----AFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLS 255
           + L L    ++K     FD       L +L EL L + QL    +    + + LTVLDL 
Sbjct: 43  QILYLHDNQITKLEPGVFD------SLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96

Query: 256 DNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNS 315
            NQ     +PS VF         L  L+ L +  N   + +P  + R  HL +L+L  N 
Sbjct: 97  TNQLTV--LPSAVFD-------RLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQ 146

Query: 316 LQGTIDSEALGNLTSISWLDLSLN 339
           L+ +I   A   L+S++   L  N
Sbjct: 147 LK-SIPHGAFDRLSSLTHAYLFGN 169

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 17/116 (14%)

Query: 227 ELRLANCQLHHFSLLATA--NFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRH 284
           EL L   Q    +L+     N+  LT++DLS+N+     + +  F        N+T L  
Sbjct: 35  ELYLDGNQF---TLVPKELSNYKHLTLIDLSNNRIST--LSNQSF-------SNMTQLLT 82

Query: 285 LGLDSNHFNSSIPNWLY-RFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLN 339
           L L  N     IP   +     L  LSL  N +   +   A  +L+++S L +  N
Sbjct: 83  LILSYNRL-RCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 49.2 bits (116), Expect = 4e-06
 Identities = 29/227 (12%), Positives = 59/227 (25%), Gaps = 22/227 (9%)

Query: 51  FKRDLKDPSNRLASWSGNGDCCAW---AGVFCDNITGHVLHLDLRNPFNYHKESEYEAIR 107
             + LKD           G             D I  +           +      E   
Sbjct: 97  MDKILKDKKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEI 156

Query: 108 RTALVGKINPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHH 167
                  ++P L  +  L+ L +       + I +      NL+ L +    +   +   
Sbjct: 157 SWIEQVDLSPVLDAMPLLNNLKIKGT--NNLSIGKK--PRPNLKSLEIISGGLPDSVVED 212

Query: 168 LG--NLSNLQFLDLSSNYLLYVDN--------FWWLSGLSFLEHLDLRSVNLSKAFDWLM 217
           +   +L NL+ L L      Y  +         +       L+ L +           + 
Sbjct: 213 ILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMF 272

Query: 218 VTNK-LPSLVELRLANCQLHHFSLLATA----NFSSLTVLDLSDNQF 259
           + +  LP L  + ++   L                 L  +++  N  
Sbjct: 273 LESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 48.4 bits (114), Expect = 7e-06
 Identities = 23/181 (12%), Positives = 56/181 (30%), Gaps = 31/181 (17%)

Query: 201 HLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSL--LATANFSSLTVLDLSDNQ 258
              L ++ +    +  +     P+L  L + +  L    +  +  ++  +L  L L    
Sbjct: 171 MPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVG- 229

Query: 259 FDKWFIPSWVFGPIPRGLQN--LTSLRHLGLDSNHFNSSIPNWLYRFI---HLEYLSLSN 313
             + +                   +L+ LG+      + +            LE + +S 
Sbjct: 230 -VEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA 288

Query: 314 NSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEI 373
             L     +  L +                      +  + +LK +N++  +LS E+ + 
Sbjct: 289 GVL-TDEGARLLLD---------------------HVDKIKHLKFINMKYNYLSDEMKKE 326

Query: 374 L 374
           L
Sbjct: 327 L 327

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 45.3 bits (106), Expect = 6e-05
 Identities = 34/211 (16%), Positives = 72/211 (34%), Gaps = 34/211 (16%)

Query: 242 ATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLY 301
               F+    L   D  F++  I       +   L  +  L +L +   +  S       
Sbjct: 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKK--- 190

Query: 302 RFIHLEYLSLSNNSL-QGTIDSEALGNLTSISWLDLSL---NMGIEGRIPR-----SMAS 352
              +L+ L + +  L    ++     +L ++  L L +   + G +G +       S   
Sbjct: 191 PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDR 250

Query: 353 LCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTL 412
             NLK L +        + E+       +   LE++D+      G LTD+  +       
Sbjct: 251 FPNLKWLGIVDAEEQNVVVEMF--LESDILPQLETMDIS----AGVLTDEGAR------- 297

Query: 413 DFANNSIVGLIPESLGQLSTLRVLRINDNKL 443
                    L+ + + ++  L+ + +  N L
Sbjct: 298 ---------LLLDHVDKIKHLKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 45.3 bits (106), Expect = 6e-05
 Identities = 22/135 (16%), Positives = 45/135 (33%), Gaps = 32/135 (23%)

Query: 810 LEVTNLKALQSLNFSYNSFTGRIPESIG---VMRSLESIDFSANQLSGE----IPESMSS 862
                   L+ L          + E      ++  LE++D SA  L+ E    + + +  
Sbjct: 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDK 305

Query: 863 LTFLNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLCGAPLPKNCTENVSISEDENGDE 922
           +  L  +N+  N L+                    D     L K+    + +S+ +  D+
Sbjct: 306 IKHLKFINMKYNYLS--------------------DEMKKELQKSLPMKIDVSDSQEYDD 345

Query: 923 D-----EDEVDHWLY 932
           D       E++H  +
Sbjct: 346 DYSYPMITELEHHHH 360

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 14/141 (9%)

Query: 200 EHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQF 259
            +LDL + +L    +   V ++L SL +L L   +L           +SLT L+LS NQ 
Sbjct: 31  TYLDLETNSLKSLPN--GVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88

Query: 260 DKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLY-RFIHLEYLSLSNNSLQG 318
               +P+ VF         LT L+ L L++N    S+P+ ++ +   L+ L L  N L+ 
Sbjct: 89  QS--LPNGVF-------DKLTQLKELALNTNQL-QSLPDGVFDKLTQLKDLRLYQNQLK- 137

Query: 319 TIDSEALGNLTSISWLDLSLN 339
           ++       LTS+ ++ L  N
Sbjct: 138 SVPDGVFDRLTSLQYIWLHDN 158

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 18/93 (19%)

Query: 247 SSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLY-RFIH 305
           ++  VL L DNQ  K  +   VF         LT L  L LD+N   + +P  ++ +   
Sbjct: 30  TTTQVLYLYDNQITK--LEPGVF-------DRLTQLTRLDLDNNQL-TVLPAGVFDKLTQ 79

Query: 306 LEYLSLSNNSLQ----GTIDSEALGNLTSISWL 334
           L  LSL++N L+    G  D+  L +LT I WL
Sbjct: 80  LTQLSLNDNQLKSIPRGAFDN--LKSLTHI-WL 109

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 12/94 (12%)

Query: 247 SSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLY-RFIH 305
           SS T L+L  N+     +P  VF         LT L  L L  N    S+P+ ++ +   
Sbjct: 28  SSATRLELESNKLQS--LPHGVF-------DKLTQLTKLSLSQNQI-QSLPDGVFDKLTK 77

Query: 306 LEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLN 339
           L  L L  N LQ ++ +     LT +  L L  N
Sbjct: 78  LTILYLHENKLQ-SLPNGVFDKLTQLKELALDTN 110

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 43.8 bits (104), Expect = 7e-05
 Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 12/113 (10%)

Query: 228 LRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGL 287
           L L + +L           + LT L LS NQ     +P  VF         LT L  L L
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS--LPDGVF-------DKLTKLTILYL 83

Query: 288 DSNHFNSSIPNWLY-RFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLN 339
             N    S+PN ++ +   L+ L+L  N L+ ++       LTS+  + L  N
Sbjct: 84  HENKL-QSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 134

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 43.4 bits (103), Expect = 8e-05
 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 18/93 (19%)

Query: 247 SSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLY-RFIH 305
           +    L L++NQ  K  +   VF        +L +L+ L  +SN   ++IP  ++ +   
Sbjct: 33  TDKQRLWLNNNQITK--LEPGVF-------DHLVNLQQLYFNSNKL-TAIPTGVFDKLTQ 82

Query: 306 LEYLSLSNNSLQ----GTIDSEALGNLTSISWL 334
           L  L L++N L+    G  D+  L +LT I +L
Sbjct: 83  LTQLDLNDNHLKSIPRGAFDN--LKSLTHI-YL 112

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 22/125 (17%), Positives = 50/125 (40%), Gaps = 16/125 (12%)

Query: 141 PRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLE 200
           P        ++ ++ + + I  +   H+  L  ++ + L   +  Y+++   L  LS LE
Sbjct: 54  PTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH--YIED-GCLERLSQLE 110

Query: 201 HLD--LRSVNLSKAFDWLMVTN-------KLPSLVELRLANC-QLHHFSLLATANFSSLT 250
           +L   +  + +    +   VT+          +L  L L++   +     +  A  +SL 
Sbjct: 111 NLQKSMLEMEIISCGN---VTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLP 167

Query: 251 VLDLS 255
            L+L 
Sbjct: 168 SLELK 172

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	979
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.9
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.84
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.83
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.81
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.81
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.79
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.79
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.78
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.78
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.77
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.75
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.74
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.74
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.73
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.72
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.72
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.72
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.72
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.71
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.7
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.7
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.69
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.68
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.68
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.68
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.67
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.67
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.65
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.65
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.6
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.58
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.57
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.57
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.57
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.56
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.55
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.51
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.5
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.49
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.48
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.44
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.44
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.42
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.41
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.4
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.37
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.37
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.33
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.33
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.29
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.28
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.26
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.17
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.03
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.98
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.95
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.68
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.66
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.56
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.55
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.46
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.41
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.28
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.18
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.76
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.66
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.05
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.03
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.7
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.42

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=6e-90  Score=847.03  Aligned_cols=709  Identities=32%  Similarity=0.474  Sum_probs=482.8

Q ss_pred             CCHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCccccceeccCCCCcEEEEECCCCCCCCchhhHHHhhccccccc---cc
Q 042359           40 CLGSEKEALLSFKRDLKDPSNRLASWSGNGDCCAWAGVFCDNITGHVLHLDLRNPFNYHKESEYEAIRRTALVGK---IN  116 (979)
Q Consensus        40 c~~~~~~~ll~~k~~~~~~~~~l~~W~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~l~~~---~~  116 (979)
                      +.++|++||++||+++.||. .+++|+.+++||.|+||+|+  .|||++|||++               ..+.|.   +|
T Consensus         9 ~~~~~~~all~~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~---------------~~l~g~~~~l~   70 (768)
T 3rgz_A            9 SLYREIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSS---------------KPLNVGFSAVS   70 (768)
T ss_dssp             CHHHHHHHHHHHHTTCSCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTT---------------SCCCEEHHHHH
T ss_pred             CCHHHHHHHHHHHhhCCCcc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCC---------------CCcCCccCccC
Confidence            45889999999999999988 89999988899999999998  79999999998               478888   89


Q ss_pred             ccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCcc--ccCCCCCCceEecCCCccccCCcccccc
Q 042359          117 PSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPH--HLGNLSNLQFLDLSSNYLLYVDNFWWLS  194 (979)
Q Consensus       117 ~~l~~l~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~--~~~~L~~L~~L~Ls~n~i~~~~~~~~l~  194 (979)
                      +++.++++|+.++++.+.+..  +|+.++++++|++|||++|.+.+.+|.  .++++++|++|++++|.+........+.
T Consensus        71 ~~l~~L~~L~~l~~~~~~~~~--l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  148 (768)
T 3rgz_A           71 SSLLSLTGLESLFLSNSHING--SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL  148 (768)
T ss_dssp             HHTTTCTTCCEEECTTSCEEE--CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCC
T ss_pred             hhHhccCcccccCCcCCCcCC--CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhc
Confidence            999999999999999998753  678999999999999999999998888  9999999999999999876544333335


Q ss_pred             CCCCCCEEEccCccCCCCchhh-hhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCC
Q 042359          195 GLSFLEHLDLRSVNLSKAFDWL-MVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIP  273 (979)
Q Consensus       195 ~l~~L~~L~l~~n~~~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p  273 (979)
                      ++++|++|++++|.+++..... ..+.++++|++|++++|.+.+..+.  ..+                           
T Consensus       149 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l---------------------------  199 (768)
T 3rgz_A          149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRC---------------------------  199 (768)
T ss_dssp             CCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTC---------------------------
T ss_pred             cCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccC---------------------------
Confidence            5666666666666555432111 1134444455555554444433321  344                           


Q ss_pred             ccccCCCCCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCcccccCC
Q 042359          274 RGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASL  353 (979)
Q Consensus       274 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~~l  353 (979)
                            ++|++|++++|.+++.+|. ++++++|++|++++|.+++.+ +..++.+++|++|++++| .+.+.+|..  .+
T Consensus       200 ------~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~Ls~n-~l~~~~~~~--~l  268 (768)
T 3rgz_A          200 ------VNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSN-QFVGPIPPL--PL  268 (768)
T ss_dssp             ------TTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCH-HHHTTTCSSCCEEECCSS-CCEESCCCC--CC
T ss_pred             ------CcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcc-cHHHhcCCCCCEEECCCC-cccCccCcc--cc
Confidence                  4444444444444444433 444444444444444444333 444444444444444444 444433332  34


Q ss_pred             CCCCeeeccCccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCCCCcEEeccCCcCcccCccc-ccCCCC
Q 042359          354 CNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPES-LGQLST  432 (979)
Q Consensus       354 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~  432 (979)
                      ++|++|++++|.+.+.+|.    .+.....+|++|++++|.+++.+|..++.+++|++|++++|.+.+.+|.. +..+++
T Consensus       269 ~~L~~L~L~~n~l~~~ip~----~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~  344 (768)
T 3rgz_A          269 KSLQYLSLAENKFTGEIPD----FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG  344 (768)
T ss_dssp             TTCCEEECCSSEEEESCCC----CSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTT
T ss_pred             CCCCEEECcCCccCCccCH----HHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCC
Confidence            4444444444444444333    22222112445555555554455555555555555555555555555543 555555


Q ss_pred             CCEEEcCCCcCccccChhhhcCCC-CCcEEEccCCcccccccCCCCCcccccEEecccccCCCCCChhhhC--CCCccEE
Q 042359          433 LRVLRINDNKLNGTLSAIHFANLT-KLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYS--QKHLQFL  509 (979)
Q Consensus       433 L~~L~L~~n~l~~~l~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~--~~~L~~L  509 (979)
                      |++|++++|++.+.+|. .+.+++ +|+.|++++|.+...                        +|.++..  +++|++|
T Consensus       345 L~~L~Ls~n~l~~~~p~-~l~~l~~~L~~L~Ls~N~l~~~------------------------~~~~~~~~~~~~L~~L  399 (768)
T 3rgz_A          345 LKVLDLSFNEFSGELPE-SLTNLSASLLTLDLSSNNFSGP------------------------ILPNLCQNPKNTLQEL  399 (768)
T ss_dssp             CCEEECCSSEEEECCCT-THHHHTTTCSEEECCSSEEEEE------------------------CCTTTTCSTTCCCCEE
T ss_pred             CCEEeCcCCccCccccH-HHHhhhcCCcEEEccCCCcCCC------------------------cChhhhhcccCCccEE
Confidence            55566555555555544 344443 555555555555432                        2322222  3445555


Q ss_pred             EccCCCCCCCCchHHHhcCCCccEEEcccCcCCCCCC-CcccccCCcEEEeecccCCCCCCccCCCCcEEEccccccccc
Q 042359          510 YLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIP-NLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGS  588 (979)
Q Consensus       510 ~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~  588 (979)
                      ++++|.+.+..|..+ ..+++|++|++++|.+++.+| .+..+                     ++|++|++++|.+.+.
T Consensus       400 ~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~l~~l---------------------~~L~~L~L~~n~l~~~  457 (768)
T 3rgz_A          400 YLQNNGFTGKIPPTL-SNCSELVSLHLSFNYLSGTIPSSLGSL---------------------SKLRDLKLWLNMLEGE  457 (768)
T ss_dssp             ECCSSEEEEECCGGG-GGCTTCCEEECCSSEEESCCCGGGGGC---------------------TTCCEEECCSSCCCSC
T ss_pred             ECCCCccccccCHHH-hcCCCCCEEECcCCcccCcccHHHhcC---------------------CCCCEEECCCCcccCc
Confidence            555555555444433 334555555555555555544 33333                     3444444555555555


Q ss_pred             CChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCcccccccccc
Q 042359          589 ISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVS  668 (979)
Q Consensus       589 ~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~  668 (979)
                      +|..+.    .+++|++|++++|++++.+|..+..+++|++|++++|++++.+|.+++.+++|++|++++|++++.+|..
T Consensus       458 ~p~~~~----~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~  533 (768)
T 3rgz_A          458 IPQELM----YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE  533 (768)
T ss_dssp             CCGGGG----GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGG
T ss_pred             CCHHHc----CCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHH
Confidence            554432    3677777777777777777777777777778888877777777777777777888888888877777777


Q ss_pred             ccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCC----------------------cccCCCCccccCCCCccE
Q 042359          669 LKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSN----------------------KFHGPLPTGLCDLAFLQI  726 (979)
Q Consensus       669 l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n----------------------~l~~~~p~~l~~l~~L~~  726 (979)
                      +.++++|++|++++|+++|.+|.+++ ....+..+++..+                      .+.+..|..+..++.++.
T Consensus       534 l~~l~~L~~L~Ls~N~l~g~ip~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  612 (768)
T 3rgz_A          534 LGDCRSLIWLDLNTNLFNGTIPAAMF-KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP  612 (768)
T ss_dssp             GGGCTTCCEEECCSSEEESBCCGGGG-TTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCC
T ss_pred             HcCCCCCCEEECCCCccCCcCChHHh-cccchhhhhccccccccccccccccccccccccccccccccchhhhccccccc
Confidence            77778888888888888777777776 3444444333221                      234445555556666666


Q ss_pred             EEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccc
Q 042359          727 LDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSG  806 (979)
Q Consensus       727 L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~  806 (979)
                      ++++.|.+.|.+|..+++++.+                                              +.|||++|+++|
T Consensus       613 ~~l~~~~~~g~~~~~~~~l~~L----------------------------------------------~~LdLs~N~l~g  646 (768)
T 3rgz_A          613 CNITSRVYGGHTSPTFDNNGSM----------------------------------------------MFLDMSYNMLSG  646 (768)
T ss_dssp             SCTTSCEEEEECCCSCSSSBCC----------------------------------------------CEEECCSSCCBS
T ss_pred             cccccceecccCchhhhccccc----------------------------------------------cEEECcCCcccc
Confidence            7777777777777766655554                                              899999999999


Q ss_pred             cccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCcccccCCCCccC
Q 042359          807 KIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSSTQL  886 (979)
Q Consensus       807 ~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~  886 (979)
                      .+|.+++++++|+.|||++|+++|.||..++++++|++||||+|+++|.+|+.++.+++|++||||+|+++|+||..+++
T Consensus       647 ~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~  726 (768)
T 3rgz_A          647 YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQF  726 (768)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSG
T ss_pred             cCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccccCCC-CCCCCCCCCCCCCC
Q 042359          887 QSFDVSSFAGN-DLCGAPLPKNCTEN  911 (979)
Q Consensus       887 ~~~~~~~~~~n-~lcg~~~~~~c~~~  911 (979)
                      ++++..+|.|| ++||.|+. .|...
T Consensus       727 ~~~~~~~~~gN~~Lcg~~l~-~C~~~  751 (768)
T 3rgz_A          727 ETFPPAKFLNNPGLCGYPLP-RCDPS  751 (768)
T ss_dssp             GGSCGGGGCSCTEEESTTSC-CCCSC
T ss_pred             ccCCHHHhcCCchhcCCCCc-CCCCC
Confidence            99999999999 89999987 88644

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.6e-70  Score=674.41  Aligned_cols=653  Identities=28%  Similarity=0.397  Sum_probs=548.6

Q ss_pred             CCccEEEccCCCCCCC---ChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCccccCCCCCCEEeccCCcCcccCch-
Q 042359          223 PSLVELRLANCQLHHF---SLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPN-  298 (979)
Q Consensus       223 ~~L~~L~L~~n~l~~~---~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-  298 (979)
                      .+++.|+|+++.+.+.   .+..+..++.|+.++++.+.+.          .+|..++.+++|++|++++|.+++.+|. 
T Consensus        50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~----------~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~  119 (768)
T 3rgz_A           50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN----------GSVSGFKCSASLTSLDLSRNSLSGPVTTL  119 (768)
T ss_dssp             TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEE----------ECCCCCCCCTTCCEEECCSSEEEEEGGGG
T ss_pred             CcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcC----------CCchhhccCCCCCEEECCCCcCCCcCCCh
Confidence            4567777777777765   5667778888888888877653          2567788888899999998888888887 


Q ss_pred             -hhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCccc---ccCCCCCCeeeccCccCCcccchhh
Q 042359          299 -WLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRS---MASLCNLKSLNLRGVHLSQEISEIL  374 (979)
Q Consensus       299 -~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~---l~~l~~L~~L~L~~n~l~~~~~~~~  374 (979)
                       .++++++|++|++++|.+.+.++...+.++++|++|++++| .+.+..+..   +.++++|++|++++|.+.+..+.  
T Consensus       120 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--  196 (768)
T 3rgz_A          120 TSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN-SISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--  196 (768)
T ss_dssp             GGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSS-CCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--
T ss_pred             HHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCC-ccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--
Confidence             88888899999999888887663434478888999999988 788877776   78888999999999888776542  


Q ss_pred             hhccccccCCCcEEECcCCcCccccccccCCCCCCcEEeccCCcCcccCcccccCCCCCCEEEcCCCcCccccChhhhcC
Q 042359          375 DIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFAN  454 (979)
Q Consensus       375 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~l~~~~~~~  454 (979)
                          ..++. |++|++++|.+++.+|. ++.+++|++|++++|.+++.+|..+..+++|++|++++|++.+.++..   .
T Consensus       197 ----~~l~~-L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~  267 (768)
T 3rgz_A          197 ----SRCVN-LEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---P  267 (768)
T ss_dssp             ----TTCTT-CCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---C
T ss_pred             ----ccCCc-CCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---c
Confidence                33444 99999999999887777 889999999999999999888888999999999999999998777753   7


Q ss_pred             CCCCcEEEccCCcccccccCCCCCc-ccccEEecccccCCCCCChhhhCCCCccEEEccCCCCCCCCchHHHhcCCCccE
Q 042359          455 LTKLSWFRVDGNKLTLGVKHDWIPP-FQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKF  533 (979)
Q Consensus       455 l~~L~~L~L~~n~l~~~~~~~~~~~-~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~  533 (979)
                      +++|++|++++|.++...+..+... ++|++|++++|.+.+.+|.++..+++|++|++++|.+.+.+|...+..+++|++
T Consensus       268 l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~  347 (768)
T 3rgz_A          268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV  347 (768)
T ss_dssp             CTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCE
T ss_pred             cCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCE
Confidence            8899999999999886666666554 889999999999999999999999999999999999998888887788999999


Q ss_pred             EEcccCcCCCCCC-Cccccc-CCcEEEeecccCCCCCCcc-----CCCCcEEEcccccccccCChhhhhcccCCCcccEE
Q 042359          534 LDLGQNQIHGPIP-NLTEFT-GLLILSVYSNNMSGPLPLI-----SSNLVFLDLSNNLFSGSISPFLCYRINETKSLNAL  606 (979)
Q Consensus       534 L~Ls~n~l~~~~~-~l~~~~-~L~~L~l~~n~l~~~~~~~-----~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L  606 (979)
                      |++++|.+++.+| .+..++ +|+.|++++|.+++.+|..     .++|++|++++|.+++.+|..+.    .+++|+.|
T Consensus       348 L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~----~l~~L~~L  423 (768)
T 3rgz_A          348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS----NCSELVSL  423 (768)
T ss_dssp             EECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGG----GCTTCCEE
T ss_pred             EeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHh----cCCCCCEE
Confidence            9999999998887 677777 9999999999998877654     46799999999999999887664    48999999


Q ss_pred             eccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCccc
Q 042359          607 QLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFV  686 (979)
Q Consensus       607 ~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~  686 (979)
                      ++++|++++.+|..+..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|..+.++++|++|++++|+++
T Consensus       424 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~  503 (768)
T 3rgz_A          424 HLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT  503 (768)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             ECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCc
Q 042359          687 GNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPI  766 (979)
Q Consensus       687 ~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~  766 (979)
                      +.+|.++. .+++|++|++++|+++|.+|..++.+++|+.|++++|+++|.+|.++.....+.............+....
T Consensus       504 ~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~  582 (768)
T 3rgz_A          504 GEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDG  582 (768)
T ss_dssp             SCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCS
T ss_pred             CcCChHHh-cCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccc
Confidence            99999998 79999999999999999999999999999999999999999999999887766433221110000000000


Q ss_pred             ccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEE
Q 042359          767 DVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESID  846 (979)
Q Consensus       767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~Ld  846 (979)
                      ...............|........+..+..++++.|.+.|.+|..++++++|+.||||+|+++|.+|.+++++++|+.||
T Consensus       583 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~  662 (768)
T 3rgz_A          583 MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN  662 (768)
T ss_dssp             CCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEE
T ss_pred             ccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEe
Confidence            00000000001112233333334556667889999999999999999999999999999999999999999999999999


Q ss_pred             CcCCcccccCCCCCCCCCCCCEEEccCCcccccCCCC-ccCCCccccccCCCCCCCC
Q 042359          847 FSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSS-TQLQSFDVSSFAGNDLCGA  902 (979)
Q Consensus       847 Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~~~~~~~~~n~lcg~  902 (979)
                      |++|+++|.+|+.++++++|++||||+|+++|.||.. ..+..+...++++|.+.|.
T Consensus       663 Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~  719 (768)
T 3rgz_A          663 LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP  719 (768)
T ss_dssp             CCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEE
T ss_pred             CcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccccc
Confidence            9999999999999999999999999999999999965 5666777778899988775

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=9.9e-58  Score=556.59  Aligned_cols=599  Identities=17%  Similarity=0.181  Sum_probs=394.6

Q ss_pred             cccccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccc
Q 042359          114 KINPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWL  193 (979)
Q Consensus       114 ~~~~~l~~l~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l  193 (979)
                      .+|..+.  +++++|+|++|.++++ .+..|+++++|++|+|++|.+++..|..|+++++|++|++++|.+..++..   
T Consensus        18 ~ip~~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~---   91 (680)
T 1ziw_A           18 QVPDDLP--TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDK---   91 (680)
T ss_dssp             SCCSCSC--TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTT---
T ss_pred             ccccccC--CCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChh---
Confidence            3555544  6888888888888875 466788888888888888888887788888888888888888876655431   


Q ss_pred             cCCCCCCEEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCC
Q 042359          194 SGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIP  273 (979)
Q Consensus       194 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p  273 (979)
                                              .+..+++|++|++++|+++++++..++++++|++|++++|.++         +..|
T Consensus        92 ------------------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~---------~~~~  138 (680)
T 1ziw_A           92 ------------------------TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS---------STKL  138 (680)
T ss_dssp             ------------------------TTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCS---------CCCC
T ss_pred             ------------------------hhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCccc---------ccCc
Confidence                                    2445666666666666666666666777777777777777776         4455


Q ss_pred             ccccCCCCCCEEeccCCcCcccCchhhc--cCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCccccc
Q 042359          274 RGLQNLTSLRHLGLDSNHFNSSIPNWLY--RFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMA  351 (979)
Q Consensus       274 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~  351 (979)
                      ..++++++|++|++++|.+++..+..+.  .+++|++|++++|.+++.. +..+..+++|+.|+++++ .+.+.....+.
T Consensus       139 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~~-~l~~~~~~~~~  216 (680)
T 1ziw_A          139 GTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFS-PGCFHAIGRLFGLFLNNV-QLGPSLTEKLC  216 (680)
T ss_dssp             CSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBC-TTGGGGSSEECEEECTTC-CCHHHHHHHHH
T ss_pred             hhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccC-hhhhhhhhhhhhhhcccc-ccChhhHHHHH
Confidence            5666777777777777777666555543  3466777777777666433 566666666666666666 44322111110


Q ss_pred             ---CCCCCCeeeccCccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCCC--CcEEeccCCcCcccCccc
Q 042359          352 ---SLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKN--IVTLDFANNSIVGLIPES  426 (979)
Q Consensus       352 ---~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~--L~~L~Ls~n~l~~~~p~~  426 (979)
                         ..++                             |+.|++++|.+.+..|..+..++.  |++|++++|.+++..|..
T Consensus       217 ~~l~~~~-----------------------------L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~  267 (680)
T 1ziw_A          217 LELANTS-----------------------------IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS  267 (680)
T ss_dssp             HHHTTSC-----------------------------CCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTT
T ss_pred             HHhhhcc-----------------------------ccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCccc
Confidence               1234                             455555555555444445544432  555666655555555555


Q ss_pred             ccCCCCCCEEEcCCCcCccccChhhhcCCCCCcEEEccCCcccccccCCCCCcccccEEecccccCCCCCChhhhCCCCc
Q 042359          427 LGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHL  506 (979)
Q Consensus       427 l~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L  506 (979)
                      ++.+++|++|++++|++.+..+ ..|.++++|+.|++++|........     ..+..          .-...+..+++|
T Consensus       268 ~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~~~~~~~~~~-----~~lp~----------i~~~~~~~l~~L  331 (680)
T 1ziw_A          268 FAWLPQLEYFFLEYNNIQHLFS-HSLHGLFNVRYLNLKRSFTKQSISL-----ASLPK----------IDDFSFQWLKCL  331 (680)
T ss_dssp             TTTCTTCCEEECCSCCBSEECT-TTTTTCTTCCEEECTTCBCCC-----------CCE----------ECTTTTTTCTTC
T ss_pred             ccCcccccEeeCCCCccCccCh-hhhcCCCCccEEeccchhhhccccc-----ccccc----------cChhhcccCCCC
Confidence            5555566666666665553332 2455555555555554432210000     00000          001123344555


Q ss_pred             cEEEccCCCCCCCCchHHHhcCCCccEEEcccCcCCCCCCCcccccCCcEEEeecccCCCCCCccCCCCcEEEccccccc
Q 042359          507 QFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFS  586 (979)
Q Consensus       507 ~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~  586 (979)
                      ++|++++|.+.+..+..+ ..+++|++|++++|.+.....                      +                 
T Consensus       332 ~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~~~~~~l----------------------~-----------------  371 (680)
T 1ziw_A          332 EHLNMEDNDIPGIKSNMF-TGLINLKYLSLSNSFTSLRTL----------------------T-----------------  371 (680)
T ss_dssp             CEEECCSCCBCCCCTTTT-TTCTTCCEEECTTCBSCCCEE----------------------C-----------------
T ss_pred             CEEECCCCccCCCChhHh-ccccCCcEEECCCCchhhhhc----------------------c-----------------
Confidence            555555555555433322 334444444444443321100                      0                 


Q ss_pred             ccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCC-cccCCCCCccEEEcCCccccccc
Q 042359          587 GSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLP-YSMGSLTSLVWLHLGENRLSGNI  665 (979)
Q Consensus       587 ~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~  665 (979)
                         ...+..  ...++|+.|++++|++.+..|..+..+++|++|++++|++++.+| ..+..+++|++|++++|++.+..
T Consensus       372 ---~~~f~~--~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  446 (680)
T 1ziw_A          372 ---NETFVS--LAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT  446 (680)
T ss_dssp             ---TTTTGG--GTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECC
T ss_pred             ---hhhhcc--cccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeC
Confidence               000000  012567778888888877777788888888888888888887666 57788888888888888888877


Q ss_pred             cccccCCCCCCEEeccCCccc--ccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchh
Q 042359          666 LVSLKNCTALESLDVGENEFV--GNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCIN  743 (979)
Q Consensus       666 p~~l~~l~~L~~L~L~~N~l~--~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~  743 (979)
                      +..+..+++|+.|++++|.+.  +.+|..+. .+++|+.|++++|++++..|..+..+++|+.|++++|++++..+..+.
T Consensus       447 ~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~-~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  525 (680)
T 1ziw_A          447 RNSFALVPSLQRLMLRRVALKNVDSSPSPFQ-PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANP  525 (680)
T ss_dssp             TTTTTTCTTCCEEECTTSCCBCTTCSSCTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTST
T ss_pred             hhhhhcCcccccchhccccccccccCCcccc-cCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhcc
Confidence            888888888888888888876  56777776 688899999999988877777888999999999999998754322111


Q ss_pred             hcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeC
Q 042359          744 NLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNF  823 (979)
Q Consensus       744 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~L  823 (979)
                      .-+                                      ......++.|+.|||++|+++...+..|+++++|+.|+|
T Consensus       526 ~~~--------------------------------------~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L  567 (680)
T 1ziw_A          526 GGP--------------------------------------IYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDL  567 (680)
T ss_dssp             TSC--------------------------------------CCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCc--------------------------------------chhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeEC
Confidence            000                                      000112445689999999999444456899999999999


Q ss_pred             CCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCC-CCCCCCEEEccCCcccccCCC
Q 042359          824 SYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMS-SLTFLNHLNLSNNNLTGKIPS  882 (979)
Q Consensus       824 s~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~-~l~~L~~L~ls~N~l~g~ip~  882 (979)
                      ++|++++..|..|..+++|+.|||++|++++..|..+. .+++|+.+++++|++.+..+.
T Consensus       568 s~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          568 GLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             CCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence            99999977777789999999999999999998888787 789999999999999998764

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=3.5e-55  Score=534.10  Aligned_cols=596  Identities=22%  Similarity=0.249  Sum_probs=454.2

Q ss_pred             CEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccccCCCCCCEEEcc
Q 042359          126 SYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLR  205 (979)
Q Consensus       126 ~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~l~  205 (979)
                      +.+|.++++++.  +|..+.  +++++|+|++|.+++..+..|+++++|++|++++|.+..+..                
T Consensus         7 ~~~~cs~~~L~~--ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----------------   66 (680)
T 1ziw_A            7 EVADCSHLKLTQ--VPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP----------------   66 (680)
T ss_dssp             SEEECCSSCCSS--CCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCT----------------
T ss_pred             CeeECCCCCccc--cccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCH----------------
Confidence            578888888885  576654  789999999999998777788899999999998887655432                


Q ss_pred             CccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCccccCCCCCCEE
Q 042359          206 SVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHL  285 (979)
Q Consensus       206 ~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l~~L~~L  285 (979)
                                 ..+.++++|++|++++|+++++++..++.+++|++|++++|.++         +..|..++++++|++|
T Consensus        67 -----------~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~---------~~~~~~~~~l~~L~~L  126 (680)
T 1ziw_A           67 -----------ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ---------KIKNNPFVKQKNLITL  126 (680)
T ss_dssp             -----------THHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC---------CCCSCTTTTCTTCCEE
T ss_pred             -----------HHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccC---------ccChhHccccCCCCEE
Confidence                       23456778888888888888888888899999999999999887         3345678889999999


Q ss_pred             eccCCcCcccCchhhccCCCCCEEeccCCcCccccCccccc--ccCccCEEecCCCCCCcccCcccccCCCCCCeeeccC
Q 042359          286 GLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALG--NLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRG  363 (979)
Q Consensus       286 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~--~l~~L~~L~L~~n~~l~~~~~~~l~~l~~L~~L~L~~  363 (979)
                      ++++|.+++..|..+.++++|++|++++|.+++.. +..++  .+++|++|++++| .+.+..|..+..+++|+.|++.+
T Consensus       127 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~  204 (680)
T 1ziw_A          127 DLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK-SEELDIFANSSLKKLELSSN-QIKEFSPGCFHAIGRLFGLFLNN  204 (680)
T ss_dssp             ECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBC-HHHHGGGTTCEESEEECTTC-CCCCBCTTGGGGSSEECEEECTT
T ss_pred             ECCCCcccccCchhhcccccCCEEEccCCcccccC-HHHhhccccccccEEECCCC-cccccChhhhhhhhhhhhhhccc
Confidence            99999998888888888999999999999887543 55544  4578899999888 78888888888888888887777


Q ss_pred             ccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCCCCcEEeccCCcCcccCcccccCCCC--CCEEEcCCC
Q 042359          364 VHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLST--LRVLRINDN  441 (979)
Q Consensus       364 n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~--L~~L~L~~n  441 (979)
                      +.+......                         .++..+ ..++|++|++++|.+.+..|..+..++.  |++|++++|
T Consensus       205 ~~l~~~~~~-------------------------~~~~~l-~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n  258 (680)
T 1ziw_A          205 VQLGPSLTE-------------------------KLCLEL-ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN  258 (680)
T ss_dssp             CCCHHHHHH-------------------------HHHHHH-TTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTS
T ss_pred             cccChhhHH-------------------------HHHHHh-hhccccEEEccCCcccccChhHhhccCcCCCCEEECCCC
Confidence            765432221                         011112 3478999999999999999988888755  999999999


Q ss_pred             cCccccChhhhcCCCCCcEEEccCCcccccccCCCCCcccccEEecccccCCCCCChhhhCCCCccEEEccCCCCCCCCc
Q 042359          442 KLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFP  521 (979)
Q Consensus       442 ~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~  521 (979)
                      ++.+.. ...|..+++|+.|++++|.+....                        |..+..+++|+.|++++|...+..+
T Consensus       259 ~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~------------------------~~~~~~l~~L~~L~L~~~~~~~~~~  313 (680)
T 1ziw_A          259 NLNVVG-NDSFAWLPQLEYFFLEYNNIQHLF------------------------SHSLHGLFNVRYLNLKRSFTKQSIS  313 (680)
T ss_dssp             CCCEEC-TTTTTTCTTCCEEECCSCCBSEEC------------------------TTTTTTCTTCCEEECTTCBCCC---
T ss_pred             CcCccC-cccccCcccccEeeCCCCccCccC------------------------hhhhcCCCCccEEeccchhhhcccc
Confidence            998544 446888888888888887766433                        3344445555555555443332111


Q ss_pred             hHHHhcCCCccEEEcccCcCCCCCCCcccccCCcEEEeecccCCCCCCccCCCCcEEEcccccccccCChhhhhcccCCC
Q 042359          522 IRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETK  601 (979)
Q Consensus       522 ~~~~~~~~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~  601 (979)
                      ..   .++.+.     ..       .+..                     +++|++|++++|.+.+..+..    +..++
T Consensus       314 ~~---~lp~i~-----~~-------~~~~---------------------l~~L~~L~l~~n~l~~~~~~~----~~~l~  353 (680)
T 1ziw_A          314 LA---SLPKID-----DF-------SFQW---------------------LKCLEHLNMEDNDIPGIKSNM----FTGLI  353 (680)
T ss_dssp             ------CCEEC-----TT-------TTTT---------------------CTTCCEEECCSCCBCCCCTTT----TTTCT
T ss_pred             cc---cccccC-----hh-------hccc---------------------CCCCCEEECCCCccCCCChhH----hcccc
Confidence            00   000000     00       0111                     345666666666666554433    34478


Q ss_pred             cccEEeccCcccccc-C-CccccC--CCCCCEEEccCCcccccCCcccCCCCCccEEEcCCcccccccc-ccccCCCCCC
Q 042359          602 SLNALQLNDNYLNGE-L-PDCWMS--YQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNIL-VSLKNCTALE  676 (979)
Q Consensus       602 ~L~~L~Ls~n~l~~~-~-p~~~~~--l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~  676 (979)
                      +|++|++++|.+... + +..+..  .++|+.|++++|++++..|..|..+++|++|++++|++++.+| ..+.++++|+
T Consensus       354 ~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~  433 (680)
T 1ziw_A          354 NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIF  433 (680)
T ss_dssp             TCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCC
T ss_pred             CCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCccccc
Confidence            888888888875432 1 223333  2589999999999999999999999999999999999998776 6899999999


Q ss_pred             EEeccCCcccccCChhHHHhhhccceeeccCCccc--CCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccc
Q 042359          677 SLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFH--GPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSF  754 (979)
Q Consensus       677 ~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~  754 (979)
                      +|++++|++.+..+..+. .+++|+.|++++|.+.  +.+|..+..+++|+.|++++|++++..|..+..++.|      
T Consensus       434 ~L~Ls~n~l~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L------  506 (680)
T 1ziw_A          434 EIYLSYNKYLQLTRNSFA-LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL------  506 (680)
T ss_dssp             EEECCSCSEEECCTTTTT-TCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC------
T ss_pred             EEecCCCCcceeChhhhh-cCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcccccc------
Confidence            999999999876666665 7999999999999987  5789999999999999999999997777777776666      


Q ss_pred             cccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCccccccc--------ccccCCCCCCEEeCCCC
Q 042359          755 TRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIP--------LEVTNLKALQSLNFSYN  826 (979)
Q Consensus       755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip--------~~l~~l~~L~~L~Ls~N  826 (979)
                                                              +.|||++|++++..+        ..++++++|+.|+|++|
T Consensus       507 ----------------------------------------~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N  546 (680)
T 1ziw_A          507 ----------------------------------------EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN  546 (680)
T ss_dssp             ----------------------------------------CEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS
T ss_pred             ----------------------------------------CEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC
Confidence                                                    899999999986422        23789999999999999


Q ss_pred             cceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCcccccCCCCc--cCCCccccccCCC-CCCC
Q 042359          827 SFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSST--QLQSFDVSSFAGN-DLCG  901 (979)
Q Consensus       827 ~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~--~~~~~~~~~~~~n-~lcg  901 (979)
                      +++...+..|+.+++|+.|||++|++++..|..+..+++|++|++++|++++..|..-  .+..+....+++| -.|.
T Consensus       547 ~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~  624 (680)
T 1ziw_A          547 GFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT  624 (680)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred             CCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccC
Confidence            9994444579999999999999999998777778999999999999999998766431  4556666667777 3443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.4e-51  Score=495.57  Aligned_cols=514  Identities=20%  Similarity=0.200  Sum_probs=360.9

Q ss_pred             CCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCcccccCCCCCCeee
Q 042359          281 SLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLN  360 (979)
Q Consensus       281 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~~l~~L~~L~  360 (979)
                      ++++|++++|.+++..|..|.++++|++|++++|.+.+ +.+..|+++++|++|++++| .+.+..|..++.+++|++|+
T Consensus        34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~  111 (606)
T 3t6q_A           34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW-IHEDTFQSQHRLDTLVLTAN-PLIFMAETALSGPKALKHLF  111 (606)
T ss_dssp             TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE-ECTTTTTTCTTCCEEECTTC-CCSEECTTTTSSCTTCCEEE
T ss_pred             cCcEEEccCCccCcCChhHhccCccceEEECCCCccce-eChhhccCccccCeeeCCCC-cccccChhhhcccccccEee
Confidence            46666666666665556666666666666666666653 33556666666666666666 56655566666666666666


Q ss_pred             ccCccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCCCCcEEeccCCcCcccCcccccCCCCCC--EEEc
Q 042359          361 LRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLR--VLRI  438 (979)
Q Consensus       361 L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~--~L~L  438 (979)
                      +++|.+.+..+.    .++.++. |++|++++|.+++..+..+..+++|++|++++|.+++..|..++.+++|+  .|++
T Consensus       112 L~~n~i~~l~~~----~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l  186 (606)
T 3t6q_A          112 FIQTGISSIDFI----PLHNQKT-LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNL  186 (606)
T ss_dssp             CTTSCCSCGGGS----CCTTCTT-CCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEEC
T ss_pred             ccccCcccCCcc----hhccCCc-ccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEec
Confidence            666555543232    2222222 44444444444443222333366666666666666666666666666666  6666


Q ss_pred             CCCcCccccChhhhcCCCCCcEEEccCCcccccccCCCCCcccccEEecccccCCCCCChhhhCCCCccEEEccCCCCCC
Q 042359          439 NDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISD  518 (979)
Q Consensus       439 ~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~l~~  518 (979)
                      ++|++.+..+. .+. ..+|+.+++++|.                           ..+..+..+..++...+....+.+
T Consensus       187 ~~n~l~~~~~~-~~~-~~~L~~L~l~~~~---------------------------~~~~~~~~l~~~~l~~l~~~~~~~  237 (606)
T 3t6q_A          187 NGNDIAGIEPG-AFD-SAVFQSLNFGGTQ---------------------------NLLVIFKGLKNSTIQSLWLGTFED  237 (606)
T ss_dssp             TTCCCCEECTT-TTT-TCEEEEEECTTCS---------------------------CHHHHHHHTTTCEEEEEECCCCTT
T ss_pred             CCCccCccChh-Hhh-hccccccccCCch---------------------------hHHHHhhhccccchhheechhhcc
Confidence            66666543332 222 2455555555543                           122233333332222222111111


Q ss_pred             ----CCchHHHhcCC--CccEEEcccCcCCCCCC-CcccccCCcEEEeecccCCCCCCcc--CCCCcEEEcccccccccC
Q 042359          519 ----IFPIRFLKSAS--QLKFLDLGQNQIHGPIP-NLTEFTGLLILSVYSNNMSGPLPLI--SSNLVFLDLSNNLFSGSI  589 (979)
Q Consensus       519 ----~~~~~~~~~~~--~L~~L~Ls~n~l~~~~~-~l~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~Ls~n~l~~~~  589 (979)
                          .++...+..+.  +|+.|++++|.+++..+ .+..+++|+.|++++|.++...+..  +++|++|++++|.+.+..
T Consensus       238 ~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~  317 (606)
T 3t6q_A          238 MDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLC  317 (606)
T ss_dssp             SCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGG
T ss_pred             ccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCc
Confidence                01111111111  56667777777666555 3566667777777777666332222  468888888888888765


Q ss_pred             ChhhhhcccCCCcccEEeccCccccccCCc-cccCCCCCCEEEccCCcccccC--CcccCCCCCccEEEcCCcccccccc
Q 042359          590 SPFLCYRINETKSLNALQLNDNYLNGELPD-CWMSYQNLKTLKLSNNKFTGNL--PYSMGSLTSLVWLHLGENRLSGNIL  666 (979)
Q Consensus       590 ~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~--p~~l~~l~~L~~L~L~~n~l~~~~p  666 (979)
                      |..+    ..+++|+.|++++|.+.+.+|. .+..+++|++|++++|++++..  |..+..+++|++|++++|++.+..|
T Consensus       318 ~~~~----~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  393 (606)
T 3t6q_A          318 QISA----SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT  393 (606)
T ss_dssp             GGCG----GGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECT
T ss_pred             hhhh----hccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCH
Confidence            5443    4589999999999999877765 4889999999999999998765  7789999999999999999999889


Q ss_pred             ccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCcccccc---Ccchh
Q 042359          667 VSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAI---PNCIN  743 (979)
Q Consensus       667 ~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~---p~~~~  743 (979)
                      ..+..+++|++|++++|++.+..|......+++|+.|++++|.+++..|..+..+++|+.|++++|++.+..   +..+.
T Consensus       394 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  473 (606)
T 3t6q_A          394 EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ  473 (606)
T ss_dssp             TTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGG
T ss_pred             HHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhc
Confidence            999999999999999999998777653447899999999999999989999999999999999999998632   23454


Q ss_pred             hcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeC
Q 042359          744 NLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNF  823 (979)
Q Consensus       744 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~L  823 (979)
                      .+++                                              |+.|+|++|++++.+|..++++++|+.|+|
T Consensus       474 ~l~~----------------------------------------------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  507 (606)
T 3t6q_A          474 TLGR----------------------------------------------LEILVLSFCDLSSIDQHAFTSLKMMNHVDL  507 (606)
T ss_dssp             GCTT----------------------------------------------CCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             cCCC----------------------------------------------ccEEECCCCccCccChhhhccccCCCEEEC
Confidence            4444                                              489999999999999999999999999999


Q ss_pred             CCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCcccccCC
Q 042359          824 SYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIP  881 (979)
Q Consensus       824 s~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip  881 (979)
                      ++|++++.+|..++++++| .|||++|++++.+|..+..+++|++|++++|+++|..+
T Consensus       508 s~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          508 SHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             CSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             CCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            9999999999999999999 99999999999999999999999999999999998766

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=6.9e-51  Score=505.34  Aligned_cols=247  Identities=21%  Similarity=0.237  Sum_probs=161.2

Q ss_pred             CcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEec
Q 042359          601 KSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDV  680 (979)
Q Consensus       601 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  680 (979)
                      ++|+.|++++|.+.+..+..+..+++|++|++++|.+++ ++    .+++|+.|++++|+++ .+|..   ..+++.|++
T Consensus       338 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~----~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~l  408 (844)
T 3j0a_A          338 PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-IH----FIPSIPDIFLSGNKLV-TLPKI---NLTANLIHL  408 (844)
T ss_dssp             TTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-CS----SCCSCSEEEEESCCCC-CCCCC---CTTCCEEEC
T ss_pred             CCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-cc----CCCCcchhccCCCCcc-ccccc---ccccceeec
Confidence            334444444444443334444555555555555555542 21    2455566666666655 23322   345666666


Q ss_pred             cCCcccccCChhHHHhhhccceeeccCCcccCCCCc-cccCCCCccEEEccCCcccccc-----CcchhhcccCcccccc
Q 042359          681 GENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPT-GLCDLAFLQILDIADNNLSGAI-----PNCINNLTGMVTACSF  754 (979)
Q Consensus       681 ~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~-----p~~~~~l~~l~~~~~~  754 (979)
                      ++|++.+.-.......+++|+.|++++|++++..+. .+..+++|+.|++++|.+++..     |..+..+         
T Consensus       409 s~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l---------  479 (844)
T 3j0a_A          409 SENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGL---------  479 (844)
T ss_dssp             CSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCB---------
T ss_pred             ccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCc---------
Confidence            666665422222222567777777777777654333 3455788888888888886332     2223333         


Q ss_pred             cccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCC
Q 042359          755 TRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPE  834 (979)
Q Consensus       755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~  834 (979)
                                                           +.|+.|||++|++++.+|..+.++++|+.|+|++|++++..|.
T Consensus       480 -------------------------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~  522 (844)
T 3j0a_A          480 -------------------------------------SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHN  522 (844)
T ss_dssp             -------------------------------------CCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCC
T ss_pred             -------------------------------------ccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChh
Confidence                                                 4458999999999999999999999999999999999987777


Q ss_pred             CCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCcccccCCCCccCCCccccccCCC-CCCCCCCCCCCCCC
Q 042359          835 SIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGN-DLCGAPLPKNCTEN  911 (979)
Q Consensus       835 ~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~lcg~~~~~~c~~~  911 (979)
                      .+.  ++|+.|||++|++++.+|+.+.   +|+.+++++|++.+..+..    .|.......| .+||.+....|..+
T Consensus       523 ~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~~----~f~~~~~~~~~~~~~~~~~~~C~~p  591 (844)
T 3j0a_A          523 DLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECELS----TFINWLNHTNVTIAGPPADIYCVYP  591 (844)
T ss_dssp             CCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSCC----SHHHHHHHTTTTTCCCGGGCCCSSC
T ss_pred             hhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCcccccccH----HHHHHHHhcCcccccccccCccCCc
Confidence            776  8999999999999999998764   7889999999999877632    2211112233 66776666677543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.2e-50  Score=487.35  Aligned_cols=515  Identities=19%  Similarity=0.165  Sum_probs=325.2

Q ss_pred             CccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCccccCCCCCCEEeccCCcCcccCchhhccC
Q 042359          224 SLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRF  303 (979)
Q Consensus       224 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l  303 (979)
                      .+++|++++|.++++.+..+.++++|++|++++|.++         +..|..|+++++|++|++++|.+++..|..++++
T Consensus        34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~---------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  104 (606)
T 3t6q_A           34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY---------WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGP  104 (606)
T ss_dssp             TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCC---------EECTTTTTTCTTCCEEECTTCCCSEECTTTTSSC
T ss_pred             cCcEEEccCCccCcCChhHhccCccceEEECCCCccc---------eeChhhccCccccCeeeCCCCcccccChhhhccc
Confidence            4566666666666665556666666666666666655         3345555666666666666666655555556666


Q ss_pred             CCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCcccccCCCCCCeeeccCccCCcccchhhhhccccccC
Q 042359          304 IHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSN  383 (979)
Q Consensus       304 ~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~  383 (979)
                      ++|++|++++|.+++ +++..++++++|++|++++| .+.+.....+..+++|++|++++|.+.+               
T Consensus       105 ~~L~~L~L~~n~i~~-l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~---------------  167 (606)
T 3t6q_A          105 KALKHLFFIQTGISS-IDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNNAIHY---------------  167 (606)
T ss_dssp             TTCCEEECTTSCCSC-GGGSCCTTCTTCCEEECCSS-CCCCCCCCTTCCCTTCCEEECCSSCCCE---------------
T ss_pred             ccccEeeccccCccc-CCcchhccCCcccEEECCCC-cccccCcccccCCcccCEEEcccCcccc---------------
Confidence            666666666666553 22445555555666666555 4444222222224444444444444443               


Q ss_pred             CCcEEECcCCcCccccccccCCCCCCc--EEeccCCcCcccCcccccCCCCCCEEEcCCCcCccccChhhhcCCCCCcEE
Q 042359          384 GLESLDLRSDSIYGHLTDQLGQFKNIV--TLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWF  461 (979)
Q Consensus       384 ~L~~L~L~~n~l~~~~~~~l~~l~~L~--~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L  461 (979)
                                    ..+..++.+++|+  +|++++|.+.+..|..+.. .+|++|++++|...   + ..+..+..+...
T Consensus       168 --------------~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~~---~-~~~~~l~~~~l~  228 (606)
T 3t6q_A          168 --------------LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQNL---L-VIFKGLKNSTIQ  228 (606)
T ss_dssp             --------------ECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSCH---H-HHHHHTTTCEEE
T ss_pred             --------------cChhhhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCchhH---H-HHhhhccccchh
Confidence                          3333344444444  4444444444444433322 34445555444311   1 122233332222


Q ss_pred             EccCCccccc-----ccCCCCCc--ccccEEecccccCCCCCChhhhCCCCccEEEccCCCCCCCCchHHHhcCCCccEE
Q 042359          462 RVDGNKLTLG-----VKHDWIPP--FQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFL  534 (979)
Q Consensus       462 ~L~~n~l~~~-----~~~~~~~~--~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L  534 (979)
                      .+....+...     ....+...  .+++.+++++|.+.+..+..+..+++|++|++++|.+... |..+ ..+++|++|
T Consensus       229 ~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~l-~~l~~L~~L  306 (606)
T 3t6q_A          229 SLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSEL-PSGL-VGLSTLKKL  306 (606)
T ss_dssp             EEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCC-CSSC-CSCTTCCEE
T ss_pred             heechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCC-Chhh-cccccCCEE
Confidence            2221111110     01111111  1566666666666666666677777777777777777643 3332 456777777


Q ss_pred             EcccCcCCCCCC-CcccccCCcEEEeecccCCCCCCccCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccc
Q 042359          535 DLGQNQIHGPIP-NLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYL  613 (979)
Q Consensus       535 ~Ls~n~l~~~~~-~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l  613 (979)
                      ++++|.+.+..| .+..+++|+.|++++                     |.+.+.++..   .+..+++|++|++++|.+
T Consensus       307 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~---------------------n~~~~~~~~~---~~~~l~~L~~L~l~~n~l  362 (606)
T 3t6q_A          307 VLSANKFENLCQISASNFPSLTHLSIKG---------------------NTKRLELGTG---CLENLENLRELDLSHDDI  362 (606)
T ss_dssp             ECTTCCCSBGGGGCGGGCTTCSEEECCS---------------------CSSCCBCCSS---TTTTCTTCCEEECCSSCC
T ss_pred             ECccCCcCcCchhhhhccCcCCEEECCC---------------------CCcccccchh---hhhccCcCCEEECCCCcc
Confidence            777777776555 444444444444444                     4333333321   123466777777777777


Q ss_pred             cccC--CccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCcccccccccc-ccCCCCCCEEeccCCcccccCC
Q 042359          614 NGEL--PDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVS-LKNCTALESLDVGENEFVGNIP  690 (979)
Q Consensus       614 ~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~ip  690 (979)
                      .+..  |..+..+++|++|++++|++.+..|..+..+++|++|++++|++++..|.. +.++++|++|++++|.+.+..|
T Consensus       363 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  442 (606)
T 3t6q_A          363 ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE  442 (606)
T ss_dssp             CEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCT
T ss_pred             ccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCH
Confidence            6554  666777778888888888887777777777888888888888877665543 7778888888888888877666


Q ss_pred             hhHHHhhhccceeeccCCcccCC---CCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcc
Q 042359          691 TWIGERFSRMVVLILRSNKFHGP---LPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPID  767 (979)
Q Consensus       691 ~~~~~~l~~L~~L~L~~n~l~~~---~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~  767 (979)
                      ..+. .+++|+.|++++|++++.   .+..+..+++|+.|++++|++++..|..+.+++.|                   
T Consensus       443 ~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-------------------  502 (606)
T 3t6q_A          443 QLFD-GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM-------------------  502 (606)
T ss_dssp             TTTT-TCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTC-------------------
T ss_pred             HHHh-CCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCC-------------------
Confidence            6665 678888888888888762   33568889999999999999998888888777766                   


Q ss_pred             cceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEEC
Q 042359          768 VGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDF  847 (979)
Q Consensus       768 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdL  847 (979)
                                                 +.|||++|++++.+|..+.+++.| .|+|++|++++.+|..++.+++|+.||+
T Consensus       503 ---------------------------~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l  554 (606)
T 3t6q_A          503 ---------------------------NHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINL  554 (606)
T ss_dssp             ---------------------------CEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEEC
T ss_pred             ---------------------------CEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeC
Confidence                                       889999999999999999999999 9999999999988988999999999999


Q ss_pred             cCCcccccCC
Q 042359          848 SANQLSGEIP  857 (979)
Q Consensus       848 s~N~l~~~ip  857 (979)
                      ++|++++..+
T Consensus       555 ~~N~~~c~c~  564 (606)
T 3t6q_A          555 RQNPLDCTCS  564 (606)
T ss_dssp             TTCCEECSGG
T ss_pred             CCCCccccCC
Confidence            9999998655

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=5.7e-51  Score=490.15  Aligned_cols=540  Identities=19%  Similarity=0.176  Sum_probs=384.4

Q ss_pred             CCEEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCccccC
Q 042359          199 LEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQN  278 (979)
Q Consensus       199 L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~  278 (979)
                      .++++++++.++.++..     -.+++++|++++|+++++.+..+.++++|++|++++|.++         +..|..+.+
T Consensus        13 ~~~~~c~~~~l~~ip~~-----~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~---------~i~~~~~~~   78 (606)
T 3vq2_A           13 NITYQCMDQKLSKVPDD-----IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE---------TIEDKAWHG   78 (606)
T ss_dssp             TTEEECTTSCCSSCCTT-----SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC---------EECTTTTTT
T ss_pred             CCceEccCCCcccCCCC-----CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc---------ccCHHHhhc
Confidence            45788888888876542     1278888999999888888888888888889998888887         445677888


Q ss_pred             CCCCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcc-cCcccccCCCCCC
Q 042359          279 LTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEG-RIPRSMASLCNLK  357 (979)
Q Consensus       279 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~-~~~~~l~~l~~L~  357 (979)
                      +++|++|++++|.+++..|..|+++++|++|++++|.+.+ +++..++++++|++|++++| .+.+ .+|..++++++|+
T Consensus        79 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~  156 (606)
T 3vq2_A           79 LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS-LESFPIGQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLV  156 (606)
T ss_dssp             CTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCC-SSSSCCTTCTTCCEEECCSS-CCCCCCCCGGGGTCTTCC
T ss_pred             hhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcccc-ccccccCCCCCCCEEeCCCC-cccceechHhHhhcCCCC
Confidence            8888888888888888778888888888888888888874 43567888888888888888 6665 5688888888888


Q ss_pred             eeeccCccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCCC----CcEEeccCCcCcccCcccccCCCCC
Q 042359          358 SLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKN----IVTLDFANNSIVGLIPESLGQLSTL  433 (979)
Q Consensus       358 ~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~----L~~L~Ls~n~l~~~~p~~l~~l~~L  433 (979)
                      +|++++|.+.+..+.                             .++.+++    +++|++++|.+++..+..+... +|
T Consensus       157 ~L~Ls~n~l~~~~~~-----------------------------~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L  206 (606)
T 3vq2_A          157 HVDLSYNYIQTITVN-----------------------------DLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KL  206 (606)
T ss_dssp             EEECCSSCCCEECTT-----------------------------TTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EE
T ss_pred             EEEccCCcceecChh-----------------------------hhhhhhccccccceeeccCCCcceeCcccccCc-ee
Confidence            888887777665444                             2222222    3356666666555444444333 56


Q ss_pred             CEEEcCCCcCccccChhhhcCCCCCcEEEccCCcccccccCCCCCcccccEEecccccCCCCCChhhhCCCCccEEEc-c
Q 042359          434 RVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYL-V  512 (979)
Q Consensus       434 ~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~L-s  512 (979)
                      ++|++++|.+.+......+.+++.|+.+++..+.+.........               ....+..+..+ +++.+++ .
T Consensus       207 ~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~---------------~~~~~~~l~~l-~l~~l~l~~  270 (606)
T 3vq2_A          207 HELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF---------------EPSIMEGLCDV-TIDEFRLTY  270 (606)
T ss_dssp             EEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC---------------CGGGGTTGGGS-EEEEEEECC
T ss_pred             eeeeccCCccchhHHHHHhccccccccccccccccccCCccccc---------------ChHHhhhhhhc-cHhheeccc
Confidence            66666666665444444566666666655544332211000000               00000111111 2334444 3


Q ss_pred             CCCCCCCCchHHHhcCCCccEEEcccCcCCCCCCCcccccCCcEEEeecccCCCCCCccCCCCcEEEcccccccccCChh
Q 042359          513 NSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPF  592 (979)
Q Consensus       513 ~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~  592 (979)
                      .+.+.+..|.  +..+++|+.|++++|.+.. +|.+..+                     ++|++|++++|.+ +.+|..
T Consensus       271 ~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~-l~~l~~~---------------------~~L~~L~l~~n~l-~~lp~~  325 (606)
T 3vq2_A          271 TNDFSDDIVK--FHCLANVSAMSLAGVSIKY-LEDVPKH---------------------FKWQSLSIIRCQL-KQFPTL  325 (606)
T ss_dssp             CTTCCGGGGS--CGGGTTCSEEEEESCCCCC-CCCCCTT---------------------CCCSEEEEESCCC-SSCCCC
T ss_pred             cccccccccc--cccCCCCCEEEecCccchh-hhhcccc---------------------ccCCEEEcccccC-cccccC
Confidence            3444444333  3344455555555554432 2223233                     3555556666655 444421


Q ss_pred             hhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCccccc--CCcccCCCCCccEEEcCCcccccccccccc
Q 042359          593 LCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGN--LPYSMGSLTSLVWLHLGENRLSGNILVSLK  670 (979)
Q Consensus       593 ~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~  670 (979)
                            .+++|+.|++++|...+.+  .+..+++|++|++++|++++.  +|..+..+++|++|++++|.+++ +|..+.
T Consensus       326 ------~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~  396 (606)
T 3vq2_A          326 ------DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFM  396 (606)
T ss_dssp             ------CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCT
T ss_pred             ------CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhcc
Confidence                  3677777777777555443  456778888888888888765  37777888888888888888875 567788


Q ss_pred             CCCCCCEEeccCCcccccCC-hhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccc-cCcchhhcccC
Q 042359          671 NCTALESLDVGENEFVGNIP-TWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGA-IPNCINNLTGM  748 (979)
Q Consensus       671 ~l~~L~~L~L~~N~l~~~ip-~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~l  748 (979)
                      ++++|++|++++|++.+..| ..+. .+++|+.|++++|++++..|..+..+++|+.|++++|++++. +|..++.+++|
T Consensus       397 ~l~~L~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  475 (606)
T 3vq2_A          397 GLEELQHLDFQHSTLKRVTEFSAFL-SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL  475 (606)
T ss_dssp             TCTTCCEEECTTSEEESTTTTTTTT-TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred             CCCCCCeeECCCCccCCccChhhhh-ccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCC
Confidence            88888888888888887766 3444 788899999999998888888899999999999999999874 67777776666


Q ss_pred             cccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcc
Q 042359          749 VTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSF  828 (979)
Q Consensus       749 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l  828 (979)
                                                                    +.|||++|++++.+|..++++++|+.|+|++|++
T Consensus       476 ----------------------------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  509 (606)
T 3vq2_A          476 ----------------------------------------------TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL  509 (606)
T ss_dssp             ----------------------------------------------CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             ----------------------------------------------CEEECCCCcCCccChhhhcccccCCEEECCCCcC
Confidence                                                          8899999999999999999999999999999999


Q ss_pred             eeccCCCCCccCCCCEEECcCCcccccCCCCCCCCC-CCCEEEccCCcccccCCC
Q 042359          829 TGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLT-FLNHLNLSNNNLTGKIPS  882 (979)
Q Consensus       829 ~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~-~L~~L~ls~N~l~g~ip~  882 (979)
                      ++.+|..++.+++|+.|||++|+++ .+|..+..++ +|++|++++|++.+..|.
T Consensus       510 ~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          510 LFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             SCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             CCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence            9999999999999999999999999 6788899987 699999999999987764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2.3e-52  Score=501.13  Aligned_cols=525  Identities=18%  Similarity=0.209  Sum_probs=289.3

Q ss_pred             CCHHHHHHHHHhhhcCCCCCC--------CCCCCCCCCCCccc---cceeccCCCCcEEEEECCCCCCCCchhhHHHhhc
Q 042359           40 CLGSEKEALLSFKRDLKDPSN--------RLASWSGNGDCCAW---AGVFCDNITGHVLHLDLRNPFNYHKESEYEAIRR  108 (979)
Q Consensus        40 c~~~~~~~ll~~k~~~~~~~~--------~l~~W~~~~~~c~w---~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~  108 (979)
                      ....|++||.++|+++.++..        ..++|+.+.+||.|   +||+|+. .|||++|+|++               
T Consensus        27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~-~~~V~~L~L~~---------------   90 (636)
T 4eco_A           27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNS-NGRVTGLSLEG---------------   90 (636)
T ss_dssp             HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECT-TCCEEEEECTT---------------
T ss_pred             hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcC-CCCEEEEEecC---------------
Confidence            446799999999999864422        34589988999999   9999975 49999999999               


Q ss_pred             ccccccccccccCCCCCCEEeCCCCCCCCC-----------CccccccCCCCCCEEEcCCCCCCCCCccccCCC-CCCce
Q 042359          109 TALVGKINPSLLDLKHLSYLDLSFNDFQGI-----------QIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNL-SNLQF  176 (979)
Q Consensus       109 ~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~-----------~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L-~~L~~  176 (979)
                      +++.|.+|++++++++|++|+|++|.+...           .+|...  +.+|+ ++++++.+.+.+|..+..+ .++..
T Consensus        91 ~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~  167 (636)
T 4eco_A           91 FGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCIN  167 (636)
T ss_dssp             SCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHH
T ss_pred             cccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhh
Confidence            489999999999999999999999976211           122222  34455 5555555555555444321 12222


Q ss_pred             EecCCCccccCCccccccCCCCCCEEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEEC--
Q 042359          177 LDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDL--  254 (979)
Q Consensus       177 L~Ls~n~i~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L--  254 (979)
                      +++....+...                                                         ....++.+.+  
T Consensus       168 ~~l~~~~~~~~---------------------------------------------------------~~~~l~~l~l~~  190 (636)
T 4eco_A          168 SDPQQKSIKKS---------------------------------------------------------SRITLKDTQIGQ  190 (636)
T ss_dssp             HCTTSCCCCCC---------------------------------------------------------CCCCCCTTTTTC
T ss_pred             cCccccccccc---------------------------------------------------------cccchhhhhhcc
Confidence            22211110000                                                         0000000001  


Q ss_pred             CCCCCCCCCCCCcccccCCccccCCCCCCEEeccCCcCccc-CchhhccCCCCCEEeccCCcCccccCccccc--ccCcc
Q 042359          255 SDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSS-IPNWLYRFIHLEYLSLSNNSLQGTIDSEALG--NLTSI  331 (979)
Q Consensus       255 s~n~l~~~~~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~--~l~~L  331 (979)
                      ..|+++         + +|..++++++|++|++++|.+++. ++...  .+      -+.+...+.+ |..++  ++++|
T Consensus       191 ~~n~l~---------~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~--~~------~~~~~~~~~i-p~~l~~~~l~~L  251 (636)
T 4eco_A          191 LSNNIT---------F-VSKAVMRLTKLRQFYMGNSPFVAENICEAW--EN------ENSEYAQQYK-TEDLKWDNLKDL  251 (636)
T ss_dssp             CSCEEE---------E-ECGGGGGCTTCCEEEEESCCCCGGGBSSSC--SC------TTSHHHHHHT-TSCCCGGGCTTC
T ss_pred             ccCCCc---------c-CCHHHhcccCCCEEECcCCccccccccccc--cc------cccchhcccC-chhhhhcccCCC
Confidence            123333         3 444444444555555554444442 00000  00      0000000013 44444  55555


Q ss_pred             CEEecCCCCCCcccCcccccCCCCCCeeeccCcc-CCc-ccchhhhhccccccCCCcEEECcCCcCccccccccCCCCCC
Q 042359          332 SWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVH-LSQ-EISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNI  409 (979)
Q Consensus       332 ~~L~L~~n~~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L  409 (979)
                      ++|++++| .+.+.+|..++++++|++|++++|+ +++ .+|.    .++.+.                   .+..+++|
T Consensus       252 ~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~----~~~~L~-------------------~~~~l~~L  307 (636)
T 4eco_A          252 TDVEVYNC-PNLTKLPTFLKALPEMQLINVACNRGISGEQLKD----DWQALA-------------------DAPVGEKI  307 (636)
T ss_dssp             CEEEEECC-TTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHH----HHHHHH-------------------HSGGGGTC
T ss_pred             CEEEecCC-cCCccChHHHhcCCCCCEEECcCCCCCccccchH----HHHhhh-------------------ccccCCCC
Confidence            55555555 4555555555555555555555554 444 3443    111110                   11223566


Q ss_pred             cEEeccCCcCcccCcc--cccCCCCCCEEEcCCCcCccccChhhhcCCCCCcEEEccCCcccccccCCCCCcccccEEec
Q 042359          410 VTLDFANNSIVGLIPE--SLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGL  487 (979)
Q Consensus       410 ~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l  487 (979)
                      ++|++++|+++ .+|.  .++.+++|++|++++|++.|.+|  .+..+++|+.|++++|.+                   
T Consensus       308 ~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l-------------------  365 (636)
T 4eco_A          308 QIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQI-------------------  365 (636)
T ss_dssp             CEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEE-------------------
T ss_pred             CEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCcc-------------------
Confidence            66666666666 5555  56666666666666666665554  233332222222222221                   


Q ss_pred             ccccCCCCCChhhhCCCCccEEEccCCCCCCCCchHHHhcCCCccEEEcccCcCCCCCCCcccccCCcEEEeecccCCCC
Q 042359          488 RNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGP  567 (979)
Q Consensus       488 ~~~~~~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~  567 (979)
                                                                            + .+|                     
T Consensus       366 ------------------------------------------------------~-~lp---------------------  369 (636)
T 4eco_A          366 ------------------------------------------------------T-EIP---------------------  369 (636)
T ss_dssp             ------------------------------------------------------E-ECC---------------------
T ss_pred             ------------------------------------------------------c-ccc---------------------
Confidence                                                                  1 000                     


Q ss_pred             CCccCCCCcEEEcccccccccCChhhhhcccCCCc-ccEEeccCccccccCCccccCCC--CCCEEEccCCcccccCCcc
Q 042359          568 LPLISSNLVFLDLSNNLFSGSISPFLCYRINETKS-LNALQLNDNYLNGELPDCWMSYQ--NLKTLKLSNNKFTGNLPYS  644 (979)
Q Consensus       568 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~-L~~L~Ls~n~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~p~~  644 (979)
                                             ..    +..+++ |+.|++++|.++ .+|..+...+  +|++|++++|++++.+|..
T Consensus       370 -----------------------~~----l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  421 (636)
T 4eco_A          370 -----------------------AN----FCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN  421 (636)
T ss_dssp             -----------------------TT----SEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCS
T ss_pred             -----------------------Hh----hhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhh
Confidence                                   00    011233 444444444444 3444444332  6677777777777666666


Q ss_pred             cC-------CCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCcc
Q 042359          645 MG-------SLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTG  717 (979)
Q Consensus       645 l~-------~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~  717 (979)
                      +.       .+++|++|++++|++++..+..+..+++|++|++++|+++ .+|...+....                 ..
T Consensus       422 l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~-----------------~~  483 (636)
T 4eco_A          422 FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDEN-----------------EN  483 (636)
T ss_dssp             SCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETT-----------------EE
T ss_pred             hcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcccc-----------------cc
Confidence            65       4555555555555555322223334555555555555555 44443321110                 00


Q ss_pred             ccCCCCccEEEccCCccccccCcchh--hcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhcccee
Q 042359          718 LCDLAFLQILDIADNNLSGAIPNCIN--NLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVR  795 (979)
Q Consensus       718 l~~l~~L~~L~Ls~n~l~~~~p~~~~--~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  795 (979)
                      +.++++|+.|++++|+++ .+|..+.  .++.|                                              +
T Consensus       484 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L----------------------------------------------~  516 (636)
T 4eco_A          484 FKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYL----------------------------------------------V  516 (636)
T ss_dssp             CTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTC----------------------------------------------C
T ss_pred             ccccCCccEEECcCCcCC-ccChhhhhccCCCc----------------------------------------------C
Confidence            112236777777777766 5665554  44443                                              6


Q ss_pred             EEecccCcccccccccccCCCCCCEEeC------CCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEE
Q 042359          796 MIDISRNNFSGKIPLEVTNLKALQSLNF------SYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHL  869 (979)
Q Consensus       796 ~LdLs~N~l~~~ip~~l~~l~~L~~L~L------s~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L  869 (979)
                      .|||++|++++ +|..++++++|+.|+|      ++|++.+.+|..++++++|+.|||++|++ +.+|..+.  ++|++|
T Consensus       517 ~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L  592 (636)
T 4eco_A          517 GIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVL  592 (636)
T ss_dssp             EEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEE
T ss_pred             EEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEE
Confidence            67777777775 6777777777777777      66888889999999999999999999999 68888766  789999


Q ss_pred             EccCCcccc
Q 042359          870 NLSNNNLTG  878 (979)
Q Consensus       870 ~ls~N~l~g  878 (979)
                      |+++|++..
T Consensus       593 ~Ls~N~l~~  601 (636)
T 4eco_A          593 DIKDNPNIS  601 (636)
T ss_dssp             ECCSCTTCE
T ss_pred             ECcCCCCcc
Confidence            999998774

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=3.9e-50  Score=482.88  Aligned_cols=538  Identities=18%  Similarity=0.138  Sum_probs=400.3

Q ss_pred             CceEecCCCccccCCccccccCCCCCCEEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEE
Q 042359          174 LQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLD  253 (979)
Q Consensus       174 L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  253 (979)
                      -++++.+++.+..++..    -.+++++|++++|.+++...  ..+.++++|++|++++|+++++.+..|.++++|++|+
T Consensus        13 ~~~~~c~~~~l~~ip~~----~~~~l~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~   86 (606)
T 3vq2_A           13 NITYQCMDQKLSKVPDD----IPSSTKNIDLSFNPLKILKS--YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLI   86 (606)
T ss_dssp             TTEEECTTSCCSSCCTT----SCTTCCEEECTTSCCCEECT--TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             CCceEccCCCcccCCCC----CCCCcCEEECCCCCcCEeCh--hhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeE
Confidence            46799999999888863    23899999999999987643  4678999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCcccccCCccccCCCCCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCcc-ccCcccccccCccC
Q 042359          254 LSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQG-TIDSEALGNLTSIS  332 (979)
Q Consensus       254 Ls~n~l~~~~~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~i~~~~l~~l~~L~  332 (979)
                      +++|.++         +..|..++++++|++|++++|.+++..+..++++++|++|++++|.+.+ .+ |..++++++|+
T Consensus        87 Ls~n~l~---------~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~l-p~~~~~l~~L~  156 (606)
T 3vq2_A           87 LTGNPIQ---------SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKL-PAYFSNLTNLV  156 (606)
T ss_dssp             CTTCCCC---------CCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCC-CGGGGTCTTCC
T ss_pred             CCCCccc---------ccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceec-hHhHhhcCCCC
Confidence            9999998         5568899999999999999999998887889999999999999999985 45 88999999999


Q ss_pred             EEecCCCCCCcccCcccccCCCCCC----eeeccCccCCcccchhhhhccccccCCCcEEECcCCcCc-cccccccCCCC
Q 042359          333 WLDLSLNMGIEGRIPRSMASLCNLK----SLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIY-GHLTDQLGQFK  407 (979)
Q Consensus       333 ~L~L~~n~~l~~~~~~~l~~l~~L~----~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~l~~l~  407 (979)
                      +|++++| .+.+..+..+..+++|+    +|++++|.+.+..+.    .+.. . +|+.|++++|.+. +..|..+++++
T Consensus       157 ~L~Ls~n-~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~----~~~~-~-~L~~L~L~~n~~~~~~~~~~~~~l~  229 (606)
T 3vq2_A          157 HVDLSYN-YIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQ----AFQG-I-KLHELTLRGNFNSSNIMKTCLQNLA  229 (606)
T ss_dssp             EEECCSS-CCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTT----TTTT-C-EEEEEEEESCCSCHHHHHHHHHTTT
T ss_pred             EEEccCC-cceecChhhhhhhhccccccceeeccCCCcceeCcc----cccC-c-eeeeeeccCCccchhHHHHHhcccc
Confidence            9999999 89888887777666554    567776666544333    1111 1 2555555555443 23344444444


Q ss_pred             CCcEEeccCCcCcccCcccccCCCCCCEEEcCCCcCccccChhhhcCCCCCcEEEccCCcccccccCCCCCcccccEEec
Q 042359          408 NIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGL  487 (979)
Q Consensus       408 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l  487 (979)
                      .|+.+++..+.+.+..        .+          . .++...+..+..+                      +++.+.+
T Consensus       230 ~L~~l~l~~~~~~~~~--------~l----------~-~~~~~~~~~l~~l----------------------~l~~l~l  268 (606)
T 3vq2_A          230 GLHVHRLILGEFKDER--------NL----------E-IFEPSIMEGLCDV----------------------TIDEFRL  268 (606)
T ss_dssp             TCEEEEEEEECCTTSC--------CC----------S-CCCGGGGTTGGGS----------------------EEEEEEE
T ss_pred             ccccccccccccccCC--------cc----------c-ccChHHhhhhhhc----------------------cHhheec
Confidence            4444444332222110        00          0 0111112221111                      2333444


Q ss_pred             -ccccCCCCCChhhhCCCCccEEEccCCCCCCCCchHHHhcCCCccEEEcccCcCCCCCCCcccccCCcEEEeecccCCC
Q 042359          488 -RNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSG  566 (979)
Q Consensus       488 -~~~~~~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~  566 (979)
                       ..+.+.+..|. +..+++|+.|++++|.+....   .+..+++|++|++++|.+ +.+|.+ .+++|+.|++++|...+
T Consensus       269 ~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~---~l~~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~  342 (606)
T 3vq2_A          269 TYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLE---DVPKHFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSI  342 (606)
T ss_dssp             CCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCC---CCCTTCCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCE
T ss_pred             cccccccccccc-cccCCCCCEEEecCccchhhh---hccccccCCEEEcccccC-cccccC-CCCccceeeccCCcCcc
Confidence             33334444444 566677777777777775543   234567788888888877 556655 55555555554443222


Q ss_pred             CCCccCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCcccccc--CCccccCCCCCCEEEccCCcccccCCcc
Q 042359          567 PLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGE--LPDCWMSYQNLKTLKLSNNKFTGNLPYS  644 (979)
Q Consensus       567 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  644 (979)
                                           .+      .+..+++|+.|++++|.+++.  +|..+..+++|++|++++|.+++ +|..
T Consensus       343 ---------------------~~------~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~  394 (606)
T 3vq2_A          343 ---------------------SF------KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSAN  394 (606)
T ss_dssp             ---------------------EC------CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCC
T ss_pred             ---------------------ch------hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhh
Confidence                                 11      123466777777777777655  36777788888888888888874 6677


Q ss_pred             cCCCCCccEEEcCCcccccccc-ccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccC-CCCccccCCC
Q 042359          645 MGSLTSLVWLHLGENRLSGNIL-VSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHG-PLPTGLCDLA  722 (979)
Q Consensus       645 l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~  722 (979)
                      +..+++|++|++++|++.+..| ..+.++++|++|++++|.+.+..|..+. .+++|+.|++++|++++ .+|..+..++
T Consensus       395 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~  473 (606)
T 3vq2_A          395 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL-GLTSLNTLKMAGNSFKDNTLSNVFANTT  473 (606)
T ss_dssp             CTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTT-TCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred             ccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhc-CCCCCCEEECCCCcCCCcchHHhhccCC
Confidence            8888888888888888887777 6788888888888888888877777776 68888999999998887 4788899999


Q ss_pred             CccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccC
Q 042359          723 FLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRN  802 (979)
Q Consensus       723 ~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N  802 (979)
                      +|+.|++++|++++..|..+.+++.|                                              +.|+|++|
T Consensus       474 ~L~~L~Ls~n~l~~~~~~~~~~l~~L----------------------------------------------~~L~Ls~N  507 (606)
T 3vq2_A          474 NLTFLDLSKCQLEQISWGVFDTLHRL----------------------------------------------QLLNMSHN  507 (606)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTC----------------------------------------------CEEECCSS
T ss_pred             CCCEEECCCCcCCccChhhhcccccC----------------------------------------------CEEECCCC
Confidence            99999999999998888888877766                                              88999999


Q ss_pred             cccccccccccCCCCCCEEeCCCCcceeccCCCCCccC-CCCEEECcCCcccccCC
Q 042359          803 NFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMR-SLESIDFSANQLSGEIP  857 (979)
Q Consensus       803 ~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~-~L~~LdLs~N~l~~~ip  857 (979)
                      ++++.+|..++++++|+.|+|++|+++ .+|..+..++ +|++|++++|++.+..+
T Consensus       508 ~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          508 NLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             CCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred             cCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence            999999999999999999999999999 7888899987 69999999999997655

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.1e-48  Score=475.00  Aligned_cols=516  Identities=15%  Similarity=0.170  Sum_probs=285.4

Q ss_pred             CCCCCHHHHHHHHHhhhcCCCCCCCCCCCCCC-----CCC--ccc------------cceeccCCCCcEEEEECCCCCCC
Q 042359           37 HVGCLGSEKEALLSFKRDLKDPSNRLASWSGN-----GDC--CAW------------AGVFCDNITGHVLHLDLRNPFNY   97 (979)
Q Consensus        37 ~~~c~~~~~~~ll~~k~~~~~~~~~l~~W~~~-----~~~--c~w------------~gv~c~~~~~~v~~L~L~~~~~~   97 (979)
                      ..++..+|++||++||+++.+|     +|+.+     .+|  |.|            .||+|+. .+||+.|+|++    
T Consensus       263 ~~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~----  332 (876)
T 4ecn_A          263 ETAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAG----  332 (876)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTT----
T ss_pred             ccccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECcc----
Confidence            3456688999999999999876     78633     355  999            9999975 79999999999    


Q ss_pred             CchhhHHHhhcccccccccccccCCCCCCEEeC-CCCCCCCCCccccccCC-CCCCE--------------EEc-CCCCC
Q 042359           98 HKESEYEAIRRTALVGKINPSLLDLKHLSYLDL-SFNDFQGIQIPRFFGSM-GNLRY--------------LNL-SRTRI  160 (979)
Q Consensus        98 ~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~L-s~n~i~~~~lp~~~~~l-~~L~~--------------L~L-s~n~i  160 (979)
                                 +++.|.+|+++++|++|++|+| ++|.+++. .|-..... ..+..              ++. ....+
T Consensus       333 -----------~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~  400 (876)
T 4ecn_A          333 -----------FGAKGRVPDAIGQLTELKVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNL  400 (876)
T ss_dssp             -----------TCCEEEECGGGGGCTTCCEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGS
T ss_pred             -----------CCCCCcCchHHhccccceEeeeccccccccc-ccccccccccccchhHHHHHHHhhhhhhhccCcchhh
Confidence                       5899999999999999999999 88876553 12110000 00000              000 00000


Q ss_pred             C-----------CCCccccCCCCCCceEecCC--CccccCCccccccCCCCCCEEEccCccCCCC---------------
Q 042359          161 G-----------GMIPHHLGNLSNLQFLDLSS--NYLLYVDNFWWLSGLSFLEHLDLRSVNLSKA---------------  212 (979)
Q Consensus       161 ~-----------~~~p~~~~~L~~L~~L~Ls~--n~i~~~~~~~~l~~l~~L~~L~l~~n~~~~~---------------  212 (979)
                      .           ...+........++.+.+..  |.+..++.  .+.++++|++|++++|.+++.               
T Consensus       401 s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~--~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~  478 (876)
T 4ecn_A          401 SDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISK--AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAK  478 (876)
T ss_dssp             CHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECG--GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHH
T ss_pred             hHHHHHHhhhCccccccccccccchhhceeccccCcccchhH--HHhcCCCCCEEECcCCcCCCCccccccccccccccc
Confidence            0           00000011112222222222  33333322  244455555555555544440               


Q ss_pred             chhhhhcC--CCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCC-CCCCCCCCcccc-cCCccccCC-------CC
Q 042359          213 FDWLMVTN--KLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQ-FDKWFIPSWVFG-PIPRGLQNL-------TS  281 (979)
Q Consensus       213 ~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~-~~p~~l~~l-------~~  281 (979)
                      ..++..+.  ++++|++|++++|.+.+..+..+.++++|+.|++++|+ ++         + .+|..++++       ++
T Consensus       479 g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ls---------g~~iP~~i~~L~~~~~~l~~  549 (876)
T 4ecn_A          479 QYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS---------AAQLKADWTRLADDEDTGPK  549 (876)
T ss_dssp             HHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSC---------HHHHHHHHHHHHHCTTTTTT
T ss_pred             ccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcc---------cccchHHHHhhhhcccccCC
Confidence            01233333  56666666666666666666666666666666666665 54         4 455444333       36


Q ss_pred             CCEEeccCCcCcccCch--hhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCcccccCCCC-CCe
Q 042359          282 LRHLGLDSNHFNSSIPN--WLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCN-LKS  358 (979)
Q Consensus       282 L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~~l~~-L~~  358 (979)
                      |++|++++|.++ .+|.  .+.++++|++|++++|.++ .+ | .++.+++|++|++++| .+. .+|..+..+++ |+.
T Consensus       550 L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~l-p-~~~~L~~L~~L~Ls~N-~l~-~lp~~l~~l~~~L~~  623 (876)
T 4ecn_A          550 IQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HL-E-AFGTNVKLTDLKLDYN-QIE-EIPEDFCAFTDQVEG  623 (876)
T ss_dssp             CCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BC-C-CCCTTSEESEEECCSS-CCS-CCCTTSCEECTTCCE
T ss_pred             ccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cc-h-hhcCCCcceEEECcCC-ccc-cchHHHhhccccCCE
Confidence            666666666666 5555  5666666666666666665 45 3 5666666666666666 555 55555555555 555


Q ss_pred             eeccCccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCC--CCcEEeccCCcCcccCccc---cc--CCC
Q 042359          359 LNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFK--NIVTLDFANNSIVGLIPES---LG--QLS  431 (979)
Q Consensus       359 L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~Ls~n~l~~~~p~~---l~--~l~  431 (979)
                      |++++|.+. .                             +|..+..++  +|+.|++++|.+.+.+|..   +.  .++
T Consensus       624 L~Ls~N~L~-~-----------------------------lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~  673 (876)
T 4ecn_A          624 LGFSHNKLK-Y-----------------------------IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI  673 (876)
T ss_dssp             EECCSSCCC-S-----------------------------CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCC
T ss_pred             EECcCCCCC-c-----------------------------CchhhhccccCCCCEEECcCCcCCCccccchhhhccccCC
Confidence            555555544 3                             333333332  2566666666655544421   11  234


Q ss_pred             CCCEEEcCCCcCccccChhhhcCCCCCcEEEccCCcccccccCCCCCcccccEEecccccCCCCCChhhhCCCCccEEEc
Q 042359          432 TLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYL  511 (979)
Q Consensus       432 ~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~L  511 (979)
                      +|++|++++|++. .+|...+..+++|+.|++++|.+.......+...                 +..+.++++|+.|++
T Consensus       674 ~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~-----------------~~~l~nl~~L~~L~L  735 (876)
T 4ecn_A          674 NASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPK-----------------DGNYKNTYLLTTIDL  735 (876)
T ss_dssp             CEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCT-----------------TSCCTTGGGCCEEEC
T ss_pred             CcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccc-----------------cccccccCCccEEEC
Confidence            6666666666665 5565555566666666666666552222111110                 001122335666666


Q ss_pred             cCCCCCCCCchHHH-hcCCCccEEEcccCcCCCCCCCcccccCCcEEEeecccCCCCCCccCCCCcEEEcccccccccCC
Q 042359          512 VNSSISDIFPIRFL-KSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSIS  590 (979)
Q Consensus       512 s~n~l~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~  590 (979)
                      ++|++.. +|..+. ..+++|+.|++++|.+++.++.+..+++|+.|++++|+                           
T Consensus       736 s~N~L~~-lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~---------------------------  787 (876)
T 4ecn_A          736 RFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQR---------------------------  787 (876)
T ss_dssp             CSSCCCC-CCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCB---------------------------
T ss_pred             CCCCCcc-chHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCC---------------------------
Confidence            6666653 333332 34556666666666666522234444333333333332                           


Q ss_pred             hhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCcccccccccccc
Q 042359          591 PFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLK  670 (979)
Q Consensus       591 ~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~  670 (979)
                                      ++++|++.+.+|..+..+++|++|++++|++ +.+|..+.  ++|+.|+|++|++....+..+.
T Consensus       788 ----------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~  848 (876)
T 4ecn_A          788 ----------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVC  848 (876)
T ss_dssp             ----------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGH
T ss_pred             ----------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHcc
Confidence                            2334566666666677777777777777777 46666654  4777777777777655555554


Q ss_pred             CCCCCCEEeccCCccc
Q 042359          671 NCTALESLDVGENEFV  686 (979)
Q Consensus       671 ~l~~L~~L~L~~N~l~  686 (979)
                      ....+..+.+.+|+..
T Consensus       849 ~~~~~~~~~L~~n~~~  864 (876)
T 4ecn_A          849 PYIEAGMYVLLYDKTQ  864 (876)
T ss_dssp             HHHHTTCCEEECCTTS
T ss_pred             ccccchheeecCCCcc
Confidence            4444455555555543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=8.6e-47  Score=468.57  Aligned_cols=525  Identities=21%  Similarity=0.210  Sum_probs=333.2

Q ss_pred             ccccceeccCCCCcEEEEECCCCCCCCchhhHHHhhcccccccccccccCCCCCCEEeCCCCCCCCCCc-cccccCCCCC
Q 042359           72 CAWAGVFCDNITGHVLHLDLRNPFNYHKESEYEAIRRTALVGKINPSLLDLKHLSYLDLSFNDFQGIQI-PRFFGSMGNL  150 (979)
Q Consensus        72 c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~l-p~~~~~l~~L  150 (979)
                      |.|.+|.+  ...++++|||++               +.+.+..+.+|.++++|++|+|++|.+... + |..|+++++|
T Consensus        14 ~~L~~vP~--lp~~l~~LdLs~---------------N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~-i~~~~f~~L~~L   75 (844)
T 3j0a_A           14 CNLTQVPQ--VLNTTERLLLSF---------------NYIRTVTASSFPFLEQLQLLELGSQYTPLT-IDKEAFRNLPNL   75 (844)
T ss_dssp             CCSSCCCS--SCTTCCEEEEES---------------CCCCEECSSSCSSCCSCSEEEECTTCCCCE-ECTTTTSSCTTC
T ss_pred             CCCCCCCC--CCCCcCEEECCC---------------CcCCccChhHCcccccCeEEeCCCCCCccc-cCHHHhcCCCCC
Confidence            45666665  456777777777               366666677778888888888887755432 4 6677788888


Q ss_pred             CEEEcCCCCCCCCCccccCCCCCCceEecCCCcccc-CCccccccCCCCCCEEEccCccCCCCchhhhhcCCCCCccEEE
Q 042359          151 RYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLY-VDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELR  229 (979)
Q Consensus       151 ~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~  229 (979)
                      ++|+|++|.+.+..|..|+++++|++|+|++|.+.. .+...++.++++|++|++++|.+.+.. ....+.++++|++|+
T Consensus        76 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~-~~~~~~~L~~L~~L~  154 (844)
T 3j0a_A           76 RILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY-LHPSFGKLNSLKSID  154 (844)
T ss_dssp             CEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCC-CCGGGGTCSSCCEEE
T ss_pred             CEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccc-cchhHhhCCCCCEEE
Confidence            888888888877777778888888888888887765 233334667777777777777776542 123456777777777


Q ss_pred             ccCCCCCCCChhhhcCC--CCCCEEECCCCCCCCCCCCCcccccCCccccCCCC------CCEEeccCCcCcccCchhhc
Q 042359          230 LANCQLHHFSLLATANF--SSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTS------LRHLGLDSNHFNSSIPNWLY  301 (979)
Q Consensus       230 L~~n~l~~~~~~~l~~l--~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l~~------L~~L~L~~n~l~~~~p~~l~  301 (979)
                      +++|.+++..+..+..+  ++|+.|++++|.+.         +..|..++.+++      |++|++++|.+++..+..+.
T Consensus       155 Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~---------~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~  225 (844)
T 3j0a_A          155 FSSNQIFLVCEHELEPLQGKTLSFFSLAANSLY---------SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFS  225 (844)
T ss_dssp             EESSCCCCCCSGGGHHHHHCSSCCCEECCSBSC---------CCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGG
T ss_pred             CCCCcCCeeCHHHcccccCCccceEECCCCccc---------cccccchhhcCCccccCceeEEecCCCcCchhHHHHHH
Confidence            77777777766666655  67777777777766         344444444443      77777777776666665554


Q ss_pred             cC---CCCCEEeccCCcCccc--------cCccccccc--CccCEEecCCCCCCcccCcccccCCCCCCeeeccCccCCc
Q 042359          302 RF---IHLEYLSLSNNSLQGT--------IDSEALGNL--TSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQ  368 (979)
Q Consensus       302 ~l---~~L~~L~L~~n~l~~~--------i~~~~l~~l--~~L~~L~L~~n~~l~~~~~~~l~~l~~L~~L~L~~n~l~~  368 (979)
                      ..   .+++.+.++.+.....        .....+..+  ++|+.|++++| .+.+..+..+..+++             
T Consensus       226 ~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~-------------  291 (844)
T 3j0a_A          226 NAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHG-FVFSLNSRVFETLKD-------------  291 (844)
T ss_dssp             GTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTC-CCCEECSCCSSSCCC-------------
T ss_pred             hhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCC-cccccChhhhhcCCC-------------
Confidence            32   4566666653322110        112222222  34444555444 444444444444444             


Q ss_pred             ccchhhhhccccccCCCcEEECcCCcCccccccccCCCCCCcEEeccCCcCcccCcccccCCCCCCEEEcCCCcCccccC
Q 042359          369 EISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLS  448 (979)
Q Consensus       369 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~l~  448 (979)
                                      |+.|++++|.+.+..+..+..+++|++|++++|.+++..|..|..+++|++|++++|++. .++
T Consensus       292 ----------------L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~  354 (844)
T 3j0a_A          292 ----------------LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-IIQ  354 (844)
T ss_dssp             ----------------CCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCC-CCC
T ss_pred             ----------------CCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCC-ccC
Confidence                            555555555555545555555555666666666555555555555556666666665554 333


Q ss_pred             hhhhcCCCCCcEEEccCCcccccccCCCCCcccccEEecccccCCCCCChhhhCCCCccEEEccCCCCCCCCchHHHhcC
Q 042359          449 AIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSA  528 (979)
Q Consensus       449 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~  528 (979)
                      ...|.++++|+.|++++|.++...     ..++|+.+++++|.+. .+|..   ..+++.|++++|.+.+.....+...+
T Consensus       355 ~~~~~~l~~L~~L~Ls~N~l~~i~-----~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l  425 (844)
T 3j0a_A          355 DQTFKFLEKLQTLDLRDNALTTIH-----FIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRV  425 (844)
T ss_dssp             SSCSCSCCCCCEEEEETCCSCCCS-----SCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTC
T ss_pred             hhhhcCCCCCCEEECCCCCCCccc-----CCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcC
Confidence            334555555666666555554321     1334455555555444 22322   34677777777777776555555567


Q ss_pred             CCccEEEcccCcCCCCCCC--cccccCCcEEEeecccCCCCCCccCCCCcEEEcccccccccCChhh-hhcccCCCcccE
Q 042359          529 SQLKFLDLGQNQIHGPIPN--LTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFL-CYRINETKSLNA  605 (979)
Q Consensus       529 ~~L~~L~Ls~n~l~~~~~~--l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~-~~~l~~~~~L~~  605 (979)
                      ++|++|++++|++++..+.  ...                     .++|+.|++++|.+++..+... ...+..+++|+.
T Consensus       426 ~~L~~L~Ls~N~l~~~~~~~~~~~---------------------~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~  484 (844)
T 3j0a_A          426 PHLQILILNQNRFSSCSGDQTPSE---------------------NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQV  484 (844)
T ss_dssp             TTCCEEEEESCCCCCCCSSSSSCS---------------------CTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEEC
T ss_pred             CccceeeCCCCccccccccccccc---------------------CCccccccCCCCccccccccccchhhhcCcccccE
Confidence            7777777777777654332  222                     3455666666666553322111 123556889999


Q ss_pred             EeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcc
Q 042359          606 LQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEF  685 (979)
Q Consensus       606 L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l  685 (979)
                      |+|++|++++..|..+..+++|++|++++|++++..|..+.  ++|+.|++++|++++..|..+   .+|+.|++++|++
T Consensus       485 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~  559 (844)
T 3j0a_A          485 LYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKF  559 (844)
T ss_dssp             CCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECC
T ss_pred             EECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCc
Confidence            99999999988888899999999999999999976666655  899999999999999888765   4789999999999


Q ss_pred             cccCC
Q 042359          686 VGNIP  690 (979)
Q Consensus       686 ~~~ip  690 (979)
                      .+..+
T Consensus       560 ~C~c~  564 (844)
T 3j0a_A          560 ICECE  564 (844)
T ss_dssp             CCSSS
T ss_pred             ccccc
Confidence            87655

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.6e-46  Score=445.38  Aligned_cols=509  Identities=23%  Similarity=0.240  Sum_probs=332.0

Q ss_pred             ccccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCcccccc
Q 042359          115 INPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLS  194 (979)
Q Consensus       115 ~~~~l~~l~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~  194 (979)
                      +|..+.  +++++|+|++|.++++ .+..|..+++|++|+|++|++++..|..|+++++|++|++++|.+..++.     
T Consensus        22 ip~~l~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-----   93 (570)
T 2z63_A           22 IPDNLP--FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL-----   93 (570)
T ss_dssp             CCSSSC--SSCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT-----
T ss_pred             cCCCcc--ccccEEEccCCccCcc-ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCH-----
Confidence            444442  4788999999988875 46678889999999999998887777788888888888888887765542     


Q ss_pred             CCCCCCEEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCc
Q 042359          195 GLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPR  274 (979)
Q Consensus       195 ~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~  274 (979)
                                            ..+..+++|++|++++|++++++...++.+++|++|++++|.++.        ..+|.
T Consensus        94 ----------------------~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~--------~~lp~  143 (570)
T 2z63_A           94 ----------------------GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS--------FKLPE  143 (570)
T ss_dssp             ----------------------TTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCC--------CCCCG
T ss_pred             ----------------------hhhcCccccccccccccccccCCCccccccccccEEecCCCccce--------ecChh
Confidence                                  234556666666777777766666667888888888888888773        24677


Q ss_pred             cccCCCCCCEEeccCCcCcccCchhhccCCCC----CEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCcccc
Q 042359          275 GLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHL----EYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSM  350 (979)
Q Consensus       275 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L----~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l  350 (979)
                      .++++++|++|++++|.+++..+..++.+++|    ++|++++|.+.+ +.+..+..+ +|++|++++|..-...++..+
T Consensus       144 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~-~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~  221 (570)
T 2z63_A          144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEI-RLHKLTLRNNFDSLNVMKTCI  221 (570)
T ss_dssp             GGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCE-ECTTTTTTC-EEEEEEEESCCSCTTHHHHHH
T ss_pred             hhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCcee-cCHHHhccC-cceeEecccccccccchhhhh
Confidence            88888888888888888887777778877777    788888888874 336666655 788888888733333456667


Q ss_pred             cCCCCCCeeeccCccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCCCCcEEeccCC-cCcccCcccccC
Q 042359          351 ASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANN-SIVGLIPESLGQ  429 (979)
Q Consensus       351 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~p~~l~~  429 (979)
                      ..+++++.+.+....+....             .++.  +....+     ..+..+ .++.++++++ .+.+..|..+..
T Consensus       222 ~~l~~l~~~~l~~~~~~~~~-------------~l~~--~~~~~~-----~~l~~l-~l~~l~l~~~~~~~~~~~~~~~~  280 (570)
T 2z63_A          222 QGLAGLEVHRLVLGEFRNEG-------------NLEK--FDKSAL-----EGLCNL-TIEEFRLAYLDYYLDDIIDLFNC  280 (570)
T ss_dssp             HTTTTCEEEEEEEEECCCCS-------------SCEE--CCTTTT-----GGGGGS-EEEEEEEEETTEEESCSTTTTGG
T ss_pred             cCccccceeeeccccccCch-------------hhhh--cchhhh-----cccccc-chhhhhhhcchhhhhhchhhhcC
Confidence            77777776665543322110             0111  111111     111111 3566777777 667777777888


Q ss_pred             CCCCCEEEcCCCcCccccChhhhcCCCCCcEEEccCCcccccccCCCCCcccccEEecccccCCCCCChhhhCCCCccEE
Q 042359          430 LSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFL  509 (979)
Q Consensus       430 l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L  509 (979)
                      +++|++|++++|.+. .++. .+..                                                + +|++|
T Consensus       281 l~~L~~L~l~~~~l~-~l~~-~~~~------------------------------------------------~-~L~~L  309 (570)
T 2z63_A          281 LTNVSSFSLVSVTIE-RVKD-FSYN------------------------------------------------F-GWQHL  309 (570)
T ss_dssp             GTTCSEEEEESCEEC-SCCB-CCSC------------------------------------------------C-CCSEE
T ss_pred             cCcccEEEecCccch-hhhh-hhcc------------------------------------------------C-CccEE
Confidence            888888888888775 3332 1111                                                1 22222


Q ss_pred             EccCCCCCCCCchHHHhcCCCccEEEcccCcCCCCCCCcccccCCcEEEeecccCCCCCCccCCCCcEEEcccccccccC
Q 042359          510 YLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSI  589 (979)
Q Consensus       510 ~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~  589 (979)
                      ++++|.+... |.   ..                                                              
T Consensus       310 ~l~~n~~~~l-~~---~~--------------------------------------------------------------  323 (570)
T 2z63_A          310 ELVNCKFGQF-PT---LK--------------------------------------------------------------  323 (570)
T ss_dssp             EEESCBCSSC-CB---CB--------------------------------------------------------------
T ss_pred             eeccCccccc-Cc---cc--------------------------------------------------------------
Confidence            2222222211 00   01                                                              


Q ss_pred             ChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccC--CcccCCCCCccEEEcCCccccccccc
Q 042359          590 SPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNL--PYSMGSLTSLVWLHLGENRLSGNILV  667 (979)
Q Consensus       590 ~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~--p~~l~~l~~L~~L~L~~n~l~~~~p~  667 (979)
                                +++|+.|++++|.+.+..+.  ..+++|++|++++|++++..  |..+..+++|++|++++|.+++..+.
T Consensus       324 ----------l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  391 (570)
T 2z63_A          324 ----------LKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN  391 (570)
T ss_dssp             ----------CSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE
T ss_pred             ----------ccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc
Confidence                      12222222222222222221  23344555555555444322  34444555555555555555543332


Q ss_pred             cccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhccc
Q 042359          668 SLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTG  747 (979)
Q Consensus       668 ~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  747 (979)
                       +..+++|++|++++|.+.+..|.                        ..+..+++|+.|++++|++.+..|..+.++++
T Consensus       392 -~~~l~~L~~L~l~~n~l~~~~~~------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  446 (570)
T 2z63_A          392 -FLGLEQLEHLDFQHSNLKQMSEF------------------------SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS  446 (570)
T ss_dssp             -EETCTTCCEEECTTSEEESCTTS------------------------CTTTTCTTCCEEECTTSCCEECCTTTTTTCTT
T ss_pred             -ccccCCCCEEEccCCccccccch------------------------hhhhcCCCCCEEeCcCCcccccchhhhhcCCc
Confidence             55555555555555555432221                        23455666666666666666666666555554


Q ss_pred             CcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCccc-ccccccccCCCCCCEEeCCCC
Q 042359          748 MVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFS-GKIPLEVTNLKALQSLNFSYN  826 (979)
Q Consensus       748 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~-~~ip~~l~~l~~L~~L~Ls~N  826 (979)
                      |                                              +.|+|++|+++ +.+|..++.+++|+.|+|++|
T Consensus       447 L----------------------------------------------~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n  480 (570)
T 2z63_A          447 L----------------------------------------------EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC  480 (570)
T ss_dssp             C----------------------------------------------CEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred             C----------------------------------------------cEEECcCCcCccccchhhhhcccCCCEEECCCC
Confidence            4                                              67777777776 578888999999999999999


Q ss_pred             cceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCcccccCCCCc
Q 042359          827 SFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSST  884 (979)
Q Consensus       827 ~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~  884 (979)
                      ++++.+|..++.+++|++|+|++|++++..|..+..+++|++|++++|+++|.+|...
T Consensus       481 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~  538 (570)
T 2z63_A          481 QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID  538 (570)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred             ccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchH
Confidence            9999889999999999999999999999888889999999999999999999988653

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.1e-45  Score=438.80  Aligned_cols=509  Identities=21%  Similarity=0.205  Sum_probs=339.7

Q ss_pred             CCEEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCccccC
Q 042359          199 LEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQN  278 (979)
Q Consensus       199 L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~  278 (979)
                      .+.++.++..++.++..     -.+++++|++++|+++++.+..+..+++|++|++++|.++         +..|..+.+
T Consensus         9 ~~~~~c~~~~l~~ip~~-----l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~---------~i~~~~~~~   74 (570)
T 2z63_A            9 NITYQCMELNFYKIPDN-----LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ---------TIEDGAYQS   74 (570)
T ss_dssp             TTEEECCSSCCSSCCSS-----SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC---------EECTTTTTT
T ss_pred             CcEEEeCCCCccccCCC-----ccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC---------ccCcccccC
Confidence            35677777666665431     1357888888888888888888888888888888888887         334566788


Q ss_pred             CCCCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcc-cCcccccCCCCCC
Q 042359          279 LTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEG-RIPRSMASLCNLK  357 (979)
Q Consensus       279 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~-~~~~~l~~l~~L~  357 (979)
                      +++|++|++++|.+++..|..|.++++|++|++++|.++ .+++..++++++|++|++++| .+.+ .+|..++++++|+
T Consensus        75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~  152 (570)
T 2z63_A           75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLE  152 (570)
T ss_dssp             CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCC-CSTTCSCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCC
T ss_pred             chhCCEEeCcCCcCCccCHhhhcCccccccccccccccc-cCCCccccccccccEEecCCC-ccceecChhhhcccCCCC
Confidence            888888888888888777778888888888888888887 343446788888888888888 6665 4677777777777


Q ss_pred             eeeccCccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCCCC----cEEeccCCcCcccCcccccCCCCC
Q 042359          358 SLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNI----VTLDFANNSIVGLIPESLGQLSTL  433 (979)
Q Consensus       358 ~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L----~~L~Ls~n~l~~~~p~~l~~l~~L  433 (979)
                      +|++++|.+.+..+.                             .++.+++|    +.|++++|.+.+..|..+..+ +|
T Consensus       153 ~L~l~~n~l~~~~~~-----------------------------~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L  202 (570)
T 2z63_A          153 HLDLSSNKIQSIYCT-----------------------------DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RL  202 (570)
T ss_dssp             EEECTTSCCCEECGG-----------------------------GGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EE
T ss_pred             EEeCcCCccceecHH-----------------------------HccchhccchhhhhcccCCCCceecCHHHhccC-cc
Confidence            777777776654443                             33333333    455555555555544444433 45


Q ss_pred             CEEEcCCCcCccccChhhhcCCCCCcEEEccCCcccccccCCCCCcccccEEecccccCCCCCChhhhCCC--CccEEEc
Q 042359          434 RVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQK--HLQFLYL  511 (979)
Q Consensus       434 ~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~--~L~~L~L  511 (979)
                      ++|++++|..........+..++.++...+....+...        ..++.+          ....+..+.  .++.+++
T Consensus       203 ~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~--------~~l~~~----------~~~~~~~l~~l~l~~l~l  264 (570)
T 2z63_A          203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE--------GNLEKF----------DKSALEGLCNLTIEEFRL  264 (570)
T ss_dssp             EEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCC--------SSCEEC----------CTTTTGGGGGSEEEEEEE
T ss_pred             eeEecccccccccchhhhhcCccccceeeeccccccCc--------hhhhhc----------chhhhccccccchhhhhh
Confidence            55555555433222222445555555444432221100        000000          000111111  2445555


Q ss_pred             cCC-CCCCCCchHHHhcCCCccEEEcccCcCCCCCCCcccccCCcEEEeecccCCCCCCccCCCCcEEEcccccccccCC
Q 042359          512 VNS-SISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSIS  590 (979)
Q Consensus       512 s~n-~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~  590 (979)
                      +++ .+.+..+..+ ..                                                               
T Consensus       265 ~~~~~~~~~~~~~~-~~---------------------------------------------------------------  280 (570)
T 2z63_A          265 AYLDYYLDDIIDLF-NC---------------------------------------------------------------  280 (570)
T ss_dssp             EETTEEESCSTTTT-GG---------------------------------------------------------------
T ss_pred             hcchhhhhhchhhh-cC---------------------------------------------------------------
Confidence            544 2222222211 11                                                               


Q ss_pred             hhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCcccccccccccc
Q 042359          591 PFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLK  670 (979)
Q Consensus       591 ~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~  670 (979)
                               +++|+.|++++|.+. .+|..+..+ +|++|++++|.+. .+|.  ..+++|++|++++|.+.+..+.  .
T Consensus       281 ---------l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~  344 (570)
T 2z63_A          281 ---------LTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--V  344 (570)
T ss_dssp             ---------GTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--C
T ss_pred             ---------cCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--c
Confidence                     233333444444333 234444444 5566666666555 4443  3455666666666666554443  5


Q ss_pred             CCCCCCEEeccCCcccccC--ChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccC-cchhhccc
Q 042359          671 NCTALESLDVGENEFVGNI--PTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIP-NCINNLTG  747 (979)
Q Consensus       671 ~l~~L~~L~L~~N~l~~~i--p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~  747 (979)
                      .+++|++|++++|++++..  |..+. .+++|+.|++++|.+.+..+. +..+++|+.|++++|++.+..| ..+.++++
T Consensus       345 ~~~~L~~L~l~~n~l~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  422 (570)
T 2z63_A          345 DLPSLEFLDLSRNGLSFKGCCSQSDF-GTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN  422 (570)
T ss_dssp             BCTTCCEEECCSSCCBEEEEEEHHHH-TCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTT
T ss_pred             cCCCCCEEeCcCCccCcccccccccc-ccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCC
Confidence            6667777777777766432  55555 677888888888877754444 8889999999999999987766 34555554


Q ss_pred             CcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCc
Q 042359          748 MVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNS  827 (979)
Q Consensus       748 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~  827 (979)
                      |                                              +.|++++|++++.+|..+..+++|+.|++++|+
T Consensus       423 L----------------------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  456 (570)
T 2z63_A          423 L----------------------------------------------IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS  456 (570)
T ss_dssp             C----------------------------------------------CEEECTTSCCEECCTTTTTTCTTCCEEECTTCE
T ss_pred             C----------------------------------------------CEEeCcCCcccccchhhhhcCCcCcEEECcCCc
Confidence            4                                              899999999999999999999999999999999


Q ss_pred             ce-eccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCcccccCCCC-ccCCCccccccCCCCC
Q 042359          828 FT-GRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSS-TQLQSFDVSSFAGNDL  899 (979)
Q Consensus       828 l~-~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~~~~~~~~~n~l  899 (979)
                      ++ +.+|..++.+++|++|||++|++++..|..+..+++|++|++++|++++.+|.. ..+..+....+.+|.+
T Consensus       457 l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~  530 (570)
T 2z63_A          457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW  530 (570)
T ss_dssp             EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcc
Confidence            98 689999999999999999999999999999999999999999999999877753 4566666677778744

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.1e-44  Score=430.17  Aligned_cols=485  Identities=21%  Similarity=0.238  Sum_probs=326.4

Q ss_pred             CCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCcccccCCCCCCeeec
Q 042359          282 LRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNL  361 (979)
Q Consensus       282 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~~l~~L~~L~L  361 (979)
                      ....+.+++.++ .+|..+.  ++|++|++++|.+++.. +..++++++|++|++++| .+.+..|..|..+++|++|++
T Consensus         7 ~~~c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L   81 (549)
T 2z81_A            7 SGVCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIG-HGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDL   81 (549)
T ss_dssp             TSEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEEC-SSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEEC
T ss_pred             CceEECCCCccc-cccccCC--CCccEEECcCCccCccC-hhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEEC
Confidence            334566666665 4454443  56777777777766333 566677777777777777 666666666666665555555


Q ss_pred             cCccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCCCCcEEeccCCcCccc-CcccccCCCCCCEEEcCC
Q 042359          362 RGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGL-IPESLGQLSTLRVLRIND  440 (979)
Q Consensus       362 ~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~  440 (979)
                      ++|.+.+                             ..+..++.+++|++|++++|.+++. .|..++++++|++|++++
T Consensus        82 s~n~l~~-----------------------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~  132 (549)
T 2z81_A           82 SDNHLSS-----------------------------LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN  132 (549)
T ss_dssp             TTSCCCS-----------------------------CCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEE
T ss_pred             CCCccCc-----------------------------cCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCC
Confidence            5555443                             3344455666666666666666642 345566666666666666


Q ss_pred             CcCccccChhhhcCCCCCcEEEccCCcccccccCCCCCcccccEEecccccCCCCCChhhhCCCCccEEEccCCCCCCCC
Q 042359          441 NKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIF  520 (979)
Q Consensus       441 n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~l~~~~  520 (979)
                      |++.+.++...+.++++|+.|++++|.+...                        .|.++..+++|++|+++.|.+.. .
T Consensus       133 n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~------------------------~~~~l~~l~~L~~L~l~~n~~~~-~  187 (549)
T 2z81_A          133 VETFSEIRRIDFAGLTSLNELEIKALSLRNY------------------------QSQSLKSIRDIHHLTLHLSESAF-L  187 (549)
T ss_dssp             SSSCCEECTTTTTTCCEEEEEEEEETTCCEE------------------------CTTTTTTCSEEEEEEEECSBSTT-H
T ss_pred             CccccccCHhhhhcccccCeeeccCCccccc------------------------ChhhhhccccCceEecccCcccc-c
Confidence            6644455544555565555555555555433                        33344444455555555554432 2


Q ss_pred             chHHHhcCCCccEEEcccCcCCCCC----CCcccccCCcEEEeecccCCCCCC-------ccCCCCcEEEcccccccccC
Q 042359          521 PIRFLKSASQLKFLDLGQNQIHGPI----PNLTEFTGLLILSVYSNNMSGPLP-------LISSNLVFLDLSNNLFSGSI  589 (979)
Q Consensus       521 ~~~~~~~~~~L~~L~Ls~n~l~~~~----~~l~~~~~L~~L~l~~n~l~~~~~-------~~~~~L~~L~Ls~n~l~~~~  589 (979)
                      +..+...+++|++|++++|++.+..    +....++.|+.|++++|.+.+..+       ....+|+.+++++|.+.+..
T Consensus       188 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~  267 (549)
T 2z81_A          188 LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLG  267 (549)
T ss_dssp             HHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCS
T ss_pred             chhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccc
Confidence            3333444555566666655555421    112234556666666665543222       12456777777777665531


Q ss_pred             --ChhhhhcccCCCcccEEeccCcccccc-----CCccccCCCCCCEEEccCCcccccCCccc-CCCCCccEEEcCCccc
Q 042359          590 --SPFLCYRINETKSLNALQLNDNYLNGE-----LPDCWMSYQNLKTLKLSNNKFTGNLPYSM-GSLTSLVWLHLGENRL  661 (979)
Q Consensus       590 --~~~~~~~l~~~~~L~~L~Ls~n~l~~~-----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~n~l  661 (979)
                        +......+..+++|+.|++.++.+...     ++..+....+|++|++++|++. .+|..+ ..+++|++|++++|++
T Consensus       268 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l  346 (549)
T 2z81_A          268 DFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLM  346 (549)
T ss_dssp             CCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCC
T ss_pred             cccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCcc
Confidence              111112344567788888888765532     1222334568999999999987 677766 4789999999999999


Q ss_pred             ccccc---ccccCCCCCCEEeccCCcccccCC--hhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCcccc
Q 042359          662 SGNIL---VSLKNCTALESLDVGENEFVGNIP--TWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSG  736 (979)
Q Consensus       662 ~~~~p---~~l~~l~~L~~L~L~~N~l~~~ip--~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~  736 (979)
                      ++.+|   ..+..+++|++|++++|++++..+  ..+. .+++|+.|++++|+++ .+|..+..+++|+.|++++|+++ 
T Consensus       347 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-  423 (549)
T 2z81_A          347 VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL-TLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-  423 (549)
T ss_dssp             CHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGG-GCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-
T ss_pred             ccccccchhhhhccccCcEEEccCCcccccccchhhhh-cCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-
Confidence            98775   347889999999999999974322  2333 7899999999999998 68888999999999999999986 


Q ss_pred             ccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCC
Q 042359          737 AIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLK  816 (979)
Q Consensus       737 ~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~  816 (979)
                      .+|..+                                                .+.|+.|||++|++++.+    +.++
T Consensus       424 ~l~~~~------------------------------------------------~~~L~~L~Ls~N~l~~~~----~~l~  451 (549)
T 2z81_A          424 VVKTCI------------------------------------------------PQTLEVLDVSNNNLDSFS----LFLP  451 (549)
T ss_dssp             CCCTTS------------------------------------------------CTTCSEEECCSSCCSCCC----CCCT
T ss_pred             cccchh------------------------------------------------cCCceEEECCCCChhhhc----ccCC
Confidence            344322                                                123589999999999753    5789


Q ss_pred             CCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCcccccCCCC
Q 042359          817 ALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSS  883 (979)
Q Consensus       817 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~  883 (979)
                      +|++|+|++|+++ .+|. .+.+++|++|||++|++++.+|..++.+++|++|++++|+++|.+|..
T Consensus       452 ~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~  516 (549)
T 2z81_A          452 RLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  516 (549)
T ss_dssp             TCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHH
T ss_pred             hhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccH
Confidence            9999999999999 7887 578999999999999999999999999999999999999999988843

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.6e-43  Score=428.65  Aligned_cols=528  Identities=22%  Similarity=0.220  Sum_probs=324.8

Q ss_pred             cccccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccc
Q 042359          114 KINPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWL  193 (979)
Q Consensus       114 ~~~~~l~~l~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l  193 (979)
                      .+|+.+.  +++++|||++|.|+.+ .|..|.++++|++|||++|+|++..|..|+++++|++|+|++|++..++.    
T Consensus        45 ~vP~~lp--~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~----  117 (635)
T 4g8a_A           45 KIPDNLP--FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL----  117 (635)
T ss_dssp             SCCSSSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECG----
T ss_pred             ccCCCCC--cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCH----
Confidence            4555442  4789999999999975 36789999999999999999997777889999999999999988766553    


Q ss_pred             cCCCCCCEEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCC
Q 042359          194 SGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIP  273 (979)
Q Consensus       194 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p  273 (979)
                                             ..+.++++|++|++++|+++++++..++++++|++|++++|.++.        ..+|
T Consensus       118 -----------------------~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~--------~~~~  166 (635)
T 4g8a_A          118 -----------------------GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS--------FKLP  166 (635)
T ss_dssp             -----------------------GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC--------CCCC
T ss_pred             -----------------------HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCcccc--------CCCc
Confidence                                   234567777777777777777777778888888888888888874        3466


Q ss_pred             ccccCCCCCCEEeccCCcCcccCchhhccCCCC----CEEeccCCcCccccCcccccccCccCEEecCCCCCCc-ccCcc
Q 042359          274 RGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHL----EYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIE-GRIPR  348 (979)
Q Consensus       274 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L----~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~-~~~~~  348 (979)
                      ..++.+++|++|++++|++++..+..+..+.++    ..++++.|.+. .+++..+ ....++.+++.+| ... ...+.
T Consensus       167 ~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~-~i~~~~~-~~~~~~~l~l~~n-~~~~~~~~~  243 (635)
T 4g8a_A          167 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAF-KEIRLHKLTLRNN-FDSLNVMKT  243 (635)
T ss_dssp             GGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC-EECTTTT-TTCEEEEEEEESC-CSSHHHHHH
T ss_pred             hhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCccc-ccCcccc-cchhhhhhhhhcc-cccccccch
Confidence            777888888888888888887777777655443    35777777776 3423333 3334566666666 222 22233


Q ss_pred             cccCCCCCCeeeccCccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCCCCcEEeccCCcCcccCccccc
Q 042359          349 SMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLG  428 (979)
Q Consensus       349 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~  428 (979)
                      .+..+..++...+..+......                                               .+.......+.
T Consensus       244 ~~~~l~~l~~~~l~~~~~~~~~-----------------------------------------------~l~~~~~~~~~  276 (635)
T 4g8a_A          244 CIQGLAGLEVHRLVLGEFRNEG-----------------------------------------------NLEKFDKSALE  276 (635)
T ss_dssp             HHHTTTTCEEEEEEEECCTTSC-----------------------------------------------CCSCCCTTTTG
T ss_pred             hhcCCccccccccccccccccc-----------------------------------------------ccccccccccc
Confidence            3444444444433322111000                                               00001111122


Q ss_pred             CCCCCCEEEcCCCcCcccc--ChhhhcCCCCCcEEEccCCcccccccCCCCCcccccEEecccccCCCCCChhhhCCCCc
Q 042359          429 QLSTLRVLRINDNKLNGTL--SAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHL  506 (979)
Q Consensus       429 ~l~~L~~L~L~~n~l~~~l--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L  506 (979)
                      .+..+...++..+......  ....+..+.+++.+++.++.+.                                     
T Consensus       277 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-------------------------------------  319 (635)
T 4g8a_A          277 GLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIE-------------------------------------  319 (635)
T ss_dssp             GGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEE-------------------------------------
T ss_pred             cccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccc-------------------------------------
Confidence            2222222222222111000  0001222222222222222221                                     


Q ss_pred             cEEEccCCCCCCCCchHHHhcCCCccEEEcccCcCCCCCCCcccccCCcEEEeecccCCCCCCccCCCCcEEEccccccc
Q 042359          507 QFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFS  586 (979)
Q Consensus       507 ~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~  586 (979)
                                 ...+.   .....++.|++.+|.+.+.                       .+.....++.++++.|.+.
T Consensus       320 -----------~~~~~---~~~~~L~~L~l~~~~~~~~-----------------------~~~~l~~L~~l~l~~n~~~  362 (635)
T 4g8a_A          320 -----------RVKDF---SYNFGWQHLELVNCKFGQF-----------------------PTLKLKSLKRLTFTSNKGG  362 (635)
T ss_dssp             -----------ECGGG---GSCCCCSEEEEESCEESSC-----------------------CCCBCTTCCEEEEESCCSC
T ss_pred             -----------ccccc---ccchhhhhhhcccccccCc-----------------------CcccchhhhhcccccccCC
Confidence                       11110   1112233333333333221                       1111223333333333322


Q ss_pred             ccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCccc--ccCCcccCCCCCccEEEcCCcccccc
Q 042359          587 GSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFT--GNLPYSMGSLTSLVWLHLGENRLSGN  664 (979)
Q Consensus       587 ~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~L~~n~l~~~  664 (979)
                      ...                              ....+++|+.|++++|.+.  +..+..+..+.+|+++++..|.... 
T Consensus       363 ~~~------------------------------~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-  411 (635)
T 4g8a_A          363 NAF------------------------------SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-  411 (635)
T ss_dssp             CBC------------------------------CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-
T ss_pred             CCc------------------------------ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-
Confidence            111                              1123344444444444442  1233334444555555555555542 


Q ss_pred             ccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccc-cccCcchh
Q 042359          665 ILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLS-GAIPNCIN  743 (979)
Q Consensus       665 ~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~p~~~~  743 (979)
                      .+..+..+++|+.+++++|......+...+..+++++.++++.|.+.+..|..+..++.|+.|++++|++. +.+|..+.
T Consensus       412 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~  491 (635)
T 4g8a_A          412 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT  491 (635)
T ss_dssp             ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT
T ss_pred             ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhh
Confidence            33345556666666666665554444444445667777777777777777777788888899999888754 34566666


Q ss_pred             hcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeC
Q 042359          744 NLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNF  823 (979)
Q Consensus       744 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~L  823 (979)
                      .+++|                                              +.|||++|++++.+|..|+++++|++|+|
T Consensus       492 ~l~~L----------------------------------------------~~L~Ls~N~L~~l~~~~f~~l~~L~~L~L  525 (635)
T 4g8a_A          492 ELRNL----------------------------------------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNM  525 (635)
T ss_dssp             TCTTC----------------------------------------------CEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             hcccc----------------------------------------------CEEECCCCccCCcChHHHcCCCCCCEEEC
Confidence            65555                                              78999999999989999999999999999


Q ss_pred             CCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCC-CCCCEEEccCCcccccC
Q 042359          824 SYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSL-TFLNHLNLSNNNLTGKI  880 (979)
Q Consensus       824 s~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l-~~L~~L~ls~N~l~g~i  880 (979)
                      ++|+|++..|..|+.+++|++|||++|+|++.+|+.+..+ ++|++|+|++|++++..
T Consensus       526 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C  583 (635)
T 4g8a_A          526 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC  583 (635)
T ss_dssp             TTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred             CCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence            9999998888899999999999999999999999999998 68999999999999754

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=7.5e-44  Score=422.97  Aligned_cols=480  Identities=20%  Similarity=0.230  Sum_probs=283.2

Q ss_pred             cccccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccc
Q 042359          114 KINPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWL  193 (979)
Q Consensus       114 ~~~~~l~~l~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l  193 (979)
                      .+|+.+.  ++|++|+|++|.+++. .|..|+.+++|++|++++|++++..|..|+++++|++|++++|.+...+.. .+
T Consensus        19 ~ip~~~~--~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~   94 (549)
T 2z81_A           19 SIPSGLT--AAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSS-WF   94 (549)
T ss_dssp             SCCSCCC--TTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHH-HH
T ss_pred             cccccCC--CCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHH-Hh
Confidence            4555554  7899999999999876 578899999999999999999988888999999999999999987765532 24


Q ss_pred             cCCCCCCEEEccCccCCCCchhhhhcCCCCCccEEEccCCC-CCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccC
Q 042359          194 SGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQ-LHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPI  272 (979)
Q Consensus       194 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~  272 (979)
                      +++++|++|++++|.+.+.. .+..+..+++|++|++++|+ +..+++..                              
T Consensus        95 ~~l~~L~~L~Ls~n~l~~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~~------------------------------  143 (549)
T 2z81_A           95 GPLSSLKYLNLMGNPYQTLG-VTSLFPNLTNLQTLRIGNVETFSEIRRID------------------------------  143 (549)
T ss_dssp             TTCTTCCEEECTTCCCSSSC-SSCSCTTCTTCCEEEEEESSSCCEECTTT------------------------------
T ss_pred             ccCCCCcEEECCCCcccccc-hhhhhhccCCccEEECCCCccccccCHhh------------------------------
Confidence            45555555555555554321 11223444444444444444 23333334                              


Q ss_pred             CccccCCCCCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccC--c-cc
Q 042359          273 PRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRI--P-RS  349 (979)
Q Consensus       273 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~--~-~~  349 (979)
                         +.++++|++|++++|.+++..|..+..+++|++|+++.|.+. .++...++.+++|++|++++| .+.+..  + ..
T Consensus       144 ---~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~  218 (549)
T 2z81_A          144 ---FAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDT-NLARFQFSPLPV  218 (549)
T ss_dssp             ---TTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESC-BCTTCCCCCCSS
T ss_pred             ---hhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCC-ccccccccccch
Confidence               444444444444444444444444444444444544444443 221222233444555555544 333321  1 11


Q ss_pred             ccCCCCCCeeeccCccCCcccchhhhhccccccCCCcEEECcCCcCcccc------ccccCCCCCCcEEeccCCcCccc-
Q 042359          350 MASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHL------TDQLGQFKNIVTLDFANNSIVGL-  422 (979)
Q Consensus       350 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~------~~~l~~l~~L~~L~Ls~n~l~~~-  422 (979)
                      ...+++|+.|++++|.+.+..+..+......... ++.+++++|.+.+..      ...+..+++|+.|++.++.+... 
T Consensus       219 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~-L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~  297 (549)
T 2z81_A          219 DEVSSPMKKLAFRGSVLTDESFNELLKLLRYILE-LSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY  297 (549)
T ss_dssp             CCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTT-CCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGG
T ss_pred             hhhhhcccceeccccccchhHHHHHHHHhhhhcc-ccccccccccccccccccccchhhhhhhcccccccccccccchhh
Confidence            2234455555555555544333322222222222 555555555443321      12234556666666666655432 


Q ss_pred             ----CcccccCCCCCCEEEcCCCcCccccChhhhcCCCCCcEEEccCCcccccccCCCCCcccccEEecccccCCCCCCh
Q 042359          423 ----IPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPL  498 (979)
Q Consensus       423 ----~p~~l~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~  498 (979)
                          ++..+...++|++|++++|++. .+|...+..+++|+.|++++|.+......                     .+.
T Consensus       298 ~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~---------------------~~~  355 (549)
T 2z81_A          298 LFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLK---------------------NSA  355 (549)
T ss_dssp             GSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHH---------------------HHT
T ss_pred             hcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCcccccccc---------------------chh
Confidence                1111223456677777777665 56654445666666666666665432100                     011


Q ss_pred             hhhCCCCccEEEccCCCCCCCCc-hHHHhcCCCccEEEcccCcCCCCCCCcccccCCcEEEeecccCCCCCCccCCCCcE
Q 042359          499 WLYSQKHLQFLYLVNSSISDIFP-IRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVF  577 (979)
Q Consensus       499 ~l~~~~~L~~L~Ls~n~l~~~~~-~~~~~~~~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~  577 (979)
                      ++..+++|++|++++|++.+..+ ...+..+++|++|++++|++++..+.+..+++                     |++
T Consensus       356 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~---------------------L~~  414 (549)
T 2z81_A          356 CKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEK---------------------MRF  414 (549)
T ss_dssp             CTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTT---------------------CCE
T ss_pred             hhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhccccc---------------------ccE
Confidence            23455677777777777766543 13345677777777777777743334444444                     455


Q ss_pred             EEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcC
Q 042359          578 LDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLG  657 (979)
Q Consensus       578 L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~  657 (979)
                      |++++|.+++ +|..+      .++|+.|++++|++++.+    ..+++|++|++++|+++ .+|. ...+++|++|+++
T Consensus       415 L~Ls~N~l~~-l~~~~------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls  481 (549)
T 2z81_A          415 LNLSSTGIRV-VKTCI------PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKIS  481 (549)
T ss_dssp             EECTTSCCSC-CCTTS------CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECC
T ss_pred             EECCCCCccc-ccchh------cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecC
Confidence            5555555442 11111      246777777777776542    46778888899998888 6775 4678899999999


Q ss_pred             CccccccccccccCCCCCCEEeccCCcccccCC
Q 042359          658 ENRLSGNILVSLKNCTALESLDVGENEFVGNIP  690 (979)
Q Consensus       658 ~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip  690 (979)
                      +|++++..|..+..+++|++|++++|++.+.+|
T Consensus       482 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          482 RNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             SSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             CCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            999998888889999999999999999988877

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.1e-43  Score=418.08  Aligned_cols=459  Identities=17%  Similarity=0.177  Sum_probs=293.2

Q ss_pred             CEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCcccccCCCCCCeeeccCccCCcccchhhhhccccccCCCc
Q 042359          307 EYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLE  386 (979)
Q Consensus       307 ~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~  386 (979)
                      +++++++|.++ .+ |..+.  ++|++|++++| .+.+..|..+..+++|++|++++|++.+..|.    .++.++. |+
T Consensus         3 ~~l~ls~n~l~-~i-p~~~~--~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~-L~   72 (520)
T 2z7x_B            3 FLVDRSKNGLI-HV-PKDLS--QKTTILNISQN-YISELWTSDILSLSKLRILIISHNRIQYLDIS----VFKFNQE-LE   72 (520)
T ss_dssp             CEEECTTSCCS-SC-CCSCC--TTCSEEECCSS-CCCCCCHHHHTTCTTCCEEECCSSCCCEEEGG----GGTTCTT-CC
T ss_pred             ceEecCCCCcc-cc-ccccc--ccccEEECCCC-cccccChhhccccccccEEecCCCccCCcChH----HhhcccC-CC
Confidence            46888888887 56 44444  78888888888 77777777888888888888888877766555    4444444 67


Q ss_pred             EEECcCCcCccccccccCCCCCCcEEeccCCcCcc-cCcccccCCCCCCEEEcCCCcCccccChhhhcCCCCC--cEEEc
Q 042359          387 SLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVG-LIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKL--SWFRV  463 (979)
Q Consensus       387 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L--~~L~L  463 (979)
                      +|++++|++++ +|..  .+++|++|++++|.+++ .+|..++.+++|++|++++|++.+    ..+..+++|  +.|++
T Consensus        73 ~L~Ls~N~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l  145 (520)
T 2z7x_B           73 YLDLSHNKLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLL  145 (520)
T ss_dssp             EEECCSSCCCE-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEE
T ss_pred             EEecCCCceee-cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEe
Confidence            77777776663 4433  56666667776666665 345666666666666666666653    134445555  55555


Q ss_pred             cCCcccccccCCCCCcccccEEecccccCCCCCChhhhCCC-CccEEEccCCCCCCCCchHHHhcCCCccEEEcccCc--
Q 042359          464 DGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQK-HLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQ--  540 (979)
Q Consensus       464 ~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~-~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~--  540 (979)
                      ++|.+..                      .+..|..+..+. ....+++++|.+.+..+...+..+++|+.|++++|.  
T Consensus       146 ~~n~l~~----------------------~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~  203 (520)
T 2z7x_B          146 VLGETYG----------------------EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLED  203 (520)
T ss_dssp             EECTTTT----------------------SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCST
T ss_pred             ecccccc----------------------cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccc
Confidence            5554410                      333444444333 233455666666655555445556666666666665  


Q ss_pred             -----CCCCCCCcccccCCcEEEeecccCCCCCCccCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccc
Q 042359          541 -----IHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNG  615 (979)
Q Consensus       541 -----l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~  615 (979)
                           +.+.++.+..+++|+.|++++|                     .+++..+..+.... ..++|+.|++++|++.|
T Consensus       204 ~~~~~~~~~~~~l~~l~~L~~L~l~~~---------------------~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~  261 (520)
T 2z7x_B          204 NKCSYFLSILAKLQTNPKLSNLTLNNI---------------------ETTWNSFIRILQLV-WHTTVWYFSISNVKLQG  261 (520)
T ss_dssp             TTTHHHHHHHHGGGGCTTCCEEEEEEE---------------------EEEHHHHHHHHHHH-HTSSCSEEEEEEEEEES
T ss_pred             cccceeecchhhhccccchhhcccccc---------------------ccCHHHHHHHHHHh-hhCcccEEEeecccccC
Confidence                 4444444445555555544444                     43332221111111 12456666666666665


Q ss_pred             cCCccc-----cCCCCCCEEEccCCcccccCC-cccCCC---CCccEEEcCCccccccccccccCCCCCCEEeccCCccc
Q 042359          616 ELPDCW-----MSYQNLKTLKLSNNKFTGNLP-YSMGSL---TSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFV  686 (979)
Q Consensus       616 ~~p~~~-----~~l~~L~~L~Ls~N~l~~~~p-~~l~~l---~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~  686 (979)
                      .+|..+     ..+++|+.+++++|.+  .+| ..+..+   ++|+.|++++|.+.+..  .+..+++|++|++++|+++
T Consensus       262 ~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~  337 (520)
T 2z7x_B          262 QLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLT  337 (520)
T ss_dssp             CCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCC
T ss_pred             ccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccC
Confidence            666555     5566666666666666  344 233322   45666666666654321  1245666666666666666


Q ss_pred             ccCChhHHHhhhccceeeccCCcccC--CCCccccCCCCccEEEccCCccccccCcc-hhhcccCcccccccccccccCC
Q 042359          687 GNIPTWIGERFSRMVVLILRSNKFHG--PLPTGLCDLAFLQILDIADNNLSGAIPNC-INNLTGMVTACSFTRSVQQYLP  763 (979)
Q Consensus       687 ~~ip~~~~~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~l~~~~~~~~~~~~~~~  763 (979)
                      +.+|.++. .+++|+.|++++|++++  .+|..+..+++|+.|++++|++++.+|.. +..++.                
T Consensus       338 ~~~~~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~----------------  400 (520)
T 2z7x_B          338 DTVFENCG-HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS----------------  400 (520)
T ss_dssp             TTTTTTCC-CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT----------------
T ss_pred             hhhhhhhc-cCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc----------------
Confidence            65666554 56666666666666665  45566777788888888888887656653 333333                


Q ss_pred             CCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCC
Q 042359          764 LPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLE  843 (979)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~  843 (979)
                                                    |+.|++++|++++.+|..+.  ++|+.|+|++|+++ .+|..+..+++|+
T Consensus       401 ------------------------------L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~  447 (520)
T 2z7x_B          401 ------------------------------LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQ  447 (520)
T ss_dssp             ------------------------------CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCC
T ss_pred             ------------------------------CCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCC
Confidence                                          47888888888888887765  78999999999999 8888888999999


Q ss_pred             EEECcCCcccccCCCC-CCCCCCCCEEEccCCcccccCC
Q 042359          844 SIDFSANQLSGEIPES-MSSLTFLNHLNLSNNNLTGKIP  881 (979)
Q Consensus       844 ~LdLs~N~l~~~ip~~-l~~l~~L~~L~ls~N~l~g~ip  881 (979)
                      +|||++|+++ .+|.. +..+++|++|++++|+++|..+
T Consensus       448 ~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          448 ELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             EEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             EEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence            9999999998 46655 8889999999999999998765

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=9.7e-43  Score=410.14  Aligned_cols=466  Identities=20%  Similarity=0.242  Sum_probs=283.9

Q ss_pred             cEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCccccCCCCCCEEeccCCcCcccCchhhccCCC
Q 042359          226 VELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIH  305 (979)
Q Consensus       226 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  305 (979)
                      ++|++++|+++.++.. +.  ++|++|++++|.++         +..|..+.++++|++|++++|++++..|..|.++++
T Consensus         3 ~~l~ls~n~l~~ip~~-~~--~~L~~L~Ls~n~i~---------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~   70 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKD-LS--QKTTILNISQNYIS---------ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQE   70 (520)
T ss_dssp             CEEECTTSCCSSCCCS-CC--TTCSEEECCSSCCC---------CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTT
T ss_pred             ceEecCCCCccccccc-cc--ccccEEECCCCccc---------ccChhhccccccccEEecCCCccCCcChHHhhcccC
Confidence            4677777777765542 22  67777777777776         334456677777777777777777666667777777


Q ss_pred             CCEEeccCCcCccccCcccccccCccCEEecCCCCCCcc-cCcccccCCCCCCeeeccCccCCcccchhhhhccccccCC
Q 042359          306 LEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEG-RIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNG  384 (979)
Q Consensus       306 L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~  384 (979)
                      |++|++++|.++ .+ |..  .+++|++|++++| .+.+ .+|..++.+++|++|++++|.+.+.               
T Consensus        71 L~~L~Ls~N~l~-~l-p~~--~l~~L~~L~L~~N-~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---------------  130 (520)
T 2z7x_B           71 LEYLDLSHNKLV-KI-SCH--PTVNLKHLDLSFN-AFDALPICKEFGNMSQLKFLGLSTTHLEKS---------------  130 (520)
T ss_dssp             CCEEECCSSCCC-EE-ECC--CCCCCSEEECCSS-CCSSCCCCGGGGGCTTCCEEEEEESSCCGG---------------
T ss_pred             CCEEecCCCcee-ec-Ccc--ccCCccEEeccCC-ccccccchhhhccCCcceEEEecCcccchh---------------
Confidence            777777777776 45 333  6677777777777 5655 4566677777777766666665541               


Q ss_pred             CcEEECcCCcCccccccccCCCCCC--cEEeccCCcC--cccCcccccCCC-CCCEEEcCCCcCccccChhhhcCCCCCc
Q 042359          385 LESLDLRSDSIYGHLTDQLGQFKNI--VTLDFANNSI--VGLIPESLGQLS-TLRVLRINDNKLNGTLSAIHFANLTKLS  459 (979)
Q Consensus       385 L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~Ls~n~l--~~~~p~~l~~l~-~L~~L~L~~n~l~~~l~~~~~~~l~~L~  459 (979)
                                       .+..+++|  ++|++++|.+  .+..|..+..+. +...+++++|++.+.++...+.++++|+
T Consensus       131 -----------------~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~  193 (520)
T 2z7x_B          131 -----------------SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE  193 (520)
T ss_dssp             -----------------GGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEE
T ss_pred             -----------------hccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhccccee
Confidence                             12223333  5555555555  444444444333 1223445555555444444444445544


Q ss_pred             EEEccCCcccccccCCCCCcccccEEecccccCCCCCChhhhCCCCccEEEccCCCCCCCCchHHHh--cCCCccEEEcc
Q 042359          460 WFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLK--SASQLKFLDLG  537 (979)
Q Consensus       460 ~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~--~~~~L~~L~Ls  537 (979)
                      .+++++|.......                 .+.+.+| .+..+++|+.|++++|.+.+..+..+..  ..++|++|+++
T Consensus       194 ~L~l~~n~~~~~~~-----------------~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~  255 (520)
T 2z7x_B          194 LSNIKCVLEDNKCS-----------------YFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSIS  255 (520)
T ss_dssp             ECCEEECCSTTTTH-----------------HHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEE
T ss_pred             eccccccccccccc-----------------eeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEee
Confidence            44444443100000                 0000111 2344455555555555544332221111  12345555555


Q ss_pred             cCcCCCCCCC-cccccCCcEEEeecccCCCCCCccCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCcccccc
Q 042359          538 QNQIHGPIPN-LTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGE  616 (979)
Q Consensus       538 ~n~l~~~~~~-l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~  616 (979)
                      +|.+.|.+|. +..+                                            ..+.++.|+.+++++|.+  .
T Consensus       256 ~n~l~~~~p~~~~~~--------------------------------------------~~~~l~~L~~l~l~~n~~--~  289 (520)
T 2z7x_B          256 NVKLQGQLDFRDFDY--------------------------------------------SGTSLKALSIHQVVSDVF--G  289 (520)
T ss_dssp             EEEEESCCCCCCCCC--------------------------------------------CSCCCCEEEEEEEEECCC--C
T ss_pred             cccccCccccchhhc--------------------------------------------ccccCceeEeccccccce--e
Confidence            5555544441 1000                                            002245555555555555  3


Q ss_pred             CC-ccccCC---CCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccc--cCC
Q 042359          617 LP-DCWMSY---QNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVG--NIP  690 (979)
Q Consensus       617 ~p-~~~~~l---~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~--~ip  690 (979)
                      +| ..+..+   .+|+.|++++|.+... + .+..+++|++|++++|++++.+|..+.++++|++|++++|++++  .+|
T Consensus       290 ~p~~~~~~~~~~~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~  367 (520)
T 2z7x_B          290 FPQSYIYEIFSNMNIKNFTVSGTRMVHM-L-CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIA  367 (520)
T ss_dssp             SCTHHHHHHHHTCCCSEEEEESSCCCCC-C-CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHH
T ss_pred             cchhhhhcccccCceeEEEcCCCccccc-c-chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccch
Confidence            33 222222   4566666666665522 1 12456677777777777777677777777777777777777764  455


Q ss_pred             hhHHHhhhccceeeccCCcccCCCCcc-ccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccc
Q 042359          691 TWIGERFSRMVVLILRSNKFHGPLPTG-LCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVG  769 (979)
Q Consensus       691 ~~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~  769 (979)
                      ..+. .+++|+.|++++|++++.+|.. +..+++|+.|++++|++++.+|..+.  +                       
T Consensus       368 ~~~~-~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~-----------------------  421 (520)
T 2z7x_B          368 EMTT-QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--P-----------------------  421 (520)
T ss_dssp             HHHT-TCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--T-----------------------
T ss_pred             HHHh-hCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--c-----------------------
Confidence            5555 5777777888888777756654 77789999999999999877776542  2                       


Q ss_pred             eeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCC-CCccCCCCEEECc
Q 042359          770 VILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPES-IGVMRSLESIDFS  848 (979)
Q Consensus       770 ~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~~l~~L~~LdLs  848 (979)
                                             .|+.|||++|+++ .+|..+..+++|+.|+|++|+++ .+|.. +..+++|+.|+++
T Consensus       422 -----------------------~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~  476 (520)
T 2z7x_B          422 -----------------------RIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLH  476 (520)
T ss_dssp             -----------------------TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred             -----------------------cCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECc
Confidence                                   3488999999999 89998889999999999999999 57765 9999999999999


Q ss_pred             CCcccccCC
Q 042359          849 ANQLSGEIP  857 (979)
Q Consensus       849 ~N~l~~~ip  857 (979)
                      +|++++..+
T Consensus       477 ~N~~~c~c~  485 (520)
T 2z7x_B          477 TNPWDCSCP  485 (520)
T ss_dssp             SSCBCCCHH
T ss_pred             CCCCcccCC
Confidence            999998654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=8.2e-43  Score=423.55  Aligned_cols=333  Identities=20%  Similarity=0.321  Sum_probs=201.8

Q ss_pred             ccccccC--CCCCCcEEeccCCcCcccCcccccCCCCCCEEEcCCCc-Ccc-ccChhhhcCCCCCcEEEccCCccccccc
Q 042359          398 HLTDQLG--QFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNK-LNG-TLSAIHFANLTKLSWFRVDGNKLTLGVK  473 (979)
Q Consensus       398 ~~~~~l~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~  473 (979)
                      .+|..++  ++++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|. .+..++                 
T Consensus       480 ~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~-~i~~L~-----------------  541 (876)
T 4ecn_A          480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKA-DWTRLA-----------------  541 (876)
T ss_dssp             HTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHH-HHHHHH-----------------
T ss_pred             cCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchH-HHHhhh-----------------
Confidence            5788877  89999999999999999999889999999999999998 877 6665 333322                 


Q ss_pred             CCCCCcccccEEecccccCCCCCChhhhCCCCccEEEccCCCCCCCCch-HHHhcCCCccEEEcccCcCCCCCCCccccc
Q 042359          474 HDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPI-RFLKSASQLKFLDLGQNQIHGPIPNLTEFT  552 (979)
Q Consensus       474 ~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~l~~~~  552 (979)
                                              ..+..+++|+.|++++|.+. .+|. ..+..+++|++|++++|.+. .+|.+..  
T Consensus       542 ------------------------~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~--  593 (876)
T 4ecn_A          542 ------------------------DDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLEAFGT--  593 (876)
T ss_dssp             ------------------------HCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCT--
T ss_pred             ------------------------hcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cchhhcC--
Confidence                                    00112334555555555555 2332 22344556666666666555 3332222  


Q ss_pred             CCcEEEeecccCCCCCCccCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCC-CCEEE
Q 042359          553 GLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQN-LKTLK  631 (979)
Q Consensus       553 ~L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~-L~~L~  631 (979)
                                                                     +++|+.|++++|.+. .+|..+..+++ |++|+
T Consensus       594 -----------------------------------------------L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~  625 (876)
T 4ecn_A          594 -----------------------------------------------NVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLG  625 (876)
T ss_dssp             -----------------------------------------------TSEESEEECCSSCCS-CCCTTSCEECTTCCEEE
T ss_pred             -----------------------------------------------CCcceEEECcCCccc-cchHHHhhccccCCEEE
Confidence                                                           233444444444444 34444444444 55555


Q ss_pred             ccCCcccccCCcccCCCCC--ccEEEcCCcccccccccc---cc--CCCCCCEEeccCCcccccCChhHHHhhhccceee
Q 042359          632 LSNNKFTGNLPYSMGSLTS--LVWLHLGENRLSGNILVS---LK--NCTALESLDVGENEFVGNIPTWIGERFSRMVVLI  704 (979)
Q Consensus       632 Ls~N~l~~~~p~~l~~l~~--L~~L~L~~n~l~~~~p~~---l~--~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~  704 (979)
                      +++|+++ .+|..+..++.  |+.|++++|++++.+|..   +.  .+++|+.|++++|+++ .+|.+++..+++|+.|+
T Consensus       626 Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~  703 (876)
T 4ecn_A          626 FSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTII  703 (876)
T ss_dssp             CCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEE
T ss_pred             CcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEE
Confidence            5555444 44444443332  555555555554433321   11  2235556666666655 55555554555666666


Q ss_pred             ccCCcccCCCCccccC--------CCCccEEEccCCccccccCcchh--hcccCcccccccccccccCCCCcccceeeee
Q 042359          705 LRSNKFHGPLPTGLCD--------LAFLQILDIADNNLSGAIPNCIN--NLTGMVTACSFTRSVQQYLPLPIDVGVILVE  774 (979)
Q Consensus       705 L~~n~l~~~~p~~l~~--------l~~L~~L~Ls~n~l~~~~p~~~~--~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  774 (979)
                      |++|+++ .+|..+..        +++|+.|+|++|+++ .+|..+.  .+++|                          
T Consensus       704 Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L--------------------------  755 (876)
T 4ecn_A          704 LSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYL--------------------------  755 (876)
T ss_dssp             CCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTC--------------------------
T ss_pred             CCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCc--------------------------
Confidence            6666665 44443332        226777777777776 5665554  44443                          


Q ss_pred             eeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCC------CcceeccCCCCCccCCCCEEECc
Q 042359          775 KASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSY------NSFTGRIPESIGVMRSLESIDFS  848 (979)
Q Consensus       775 ~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~------N~l~~~ip~~~~~l~~L~~LdLs  848 (979)
                                          +.|||++|++++ +|..++++++|+.|+|++      |++.+.+|..++++++|+.|+|+
T Consensus       756 --------------------~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls  814 (876)
T 4ecn_A          756 --------------------SNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIG  814 (876)
T ss_dssp             --------------------CEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred             --------------------CEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECC
Confidence                                667777777775 677777777777777755      77888888888888888888888


Q ss_pred             CCcccccCCCCCCCCCCCCEEEccCCcccc
Q 042359          849 ANQLSGEIPESMSSLTFLNHLNLSNNNLTG  878 (979)
Q Consensus       849 ~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  878 (979)
                      +|++ +.+|..+.  ++|+.|||++|++..
T Consensus       815 ~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~  841 (876)
T 4ecn_A          815 SNDI-RKVDEKLT--PQLYILDIADNPNIS  841 (876)
T ss_dssp             SSCC-CBCCSCCC--SSSCEEECCSCTTCE
T ss_pred             CCCC-CccCHhhc--CCCCEEECCCCCCCc
Confidence            8888 67887765  578888888888764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=3.7e-43  Score=421.23  Aligned_cols=253  Identities=22%  Similarity=0.287  Sum_probs=165.1

Q ss_pred             CCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCC-ccEEEcCCccccccccccccCCC--CCC
Q 042359          600 TKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTS-LVWLHLGENRLSGNILVSLKNCT--ALE  676 (979)
Q Consensus       600 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~-L~~L~L~~n~l~~~~p~~l~~l~--~L~  676 (979)
                      +++|+.|++++|++.|.+| .+..+++|++|++++|+++ .+|..+..+++ |++|++++|+++ .+|..+..++  +|+
T Consensus       329 l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~  405 (636)
T 4eco_A          329 MKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMS  405 (636)
T ss_dssp             CTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEE
T ss_pred             CCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccC
Confidence            4455555555555555555 4555555555555555555 45555555555 555555555555 4444444433  455


Q ss_pred             EEeccCCcccccCChhHHH------hhhccceeeccCCcccCCCCcc-ccCCCCccEEEccCCccccccCcchhhcccCc
Q 042359          677 SLDVGENEFVGNIPTWIGE------RFSRMVVLILRSNKFHGPLPTG-LCDLAFLQILDIADNNLSGAIPNCINNLTGMV  749 (979)
Q Consensus       677 ~L~L~~N~l~~~ip~~~~~------~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~  749 (979)
                      +|++++|++++.+|.++..      .+++|+.|++++|+++ .+|.. +..+++|+.|++++|+++ .+|..+.....  
T Consensus       406 ~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~--  481 (636)
T 4eco_A          406 AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDEN--  481 (636)
T ss_dssp             EEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETT--
T ss_pred             EEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcccc--
Confidence            5555555555544443320      2345566666666665 33333 344666777777777776 55543221100  


Q ss_pred             ccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCccccccccccc--CCCCCCEEeCCCCc
Q 042359          750 TACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVT--NLKALQSLNFSYNS  827 (979)
Q Consensus       750 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~--~l~~L~~L~Ls~N~  827 (979)
                                                          .....++.|+.|||++|+++ .+|..+.  .+++|+.|+|++|+
T Consensus       482 ------------------------------------~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~  524 (636)
T 4eco_A          482 ------------------------------------ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNS  524 (636)
T ss_dssp             ------------------------------------EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSC
T ss_pred             ------------------------------------ccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCC
Confidence                                                00001235689999999999 8999987  99999999999999


Q ss_pred             ceeccCCCCCccCCCCEEEC------cCCcccccCCCCCCCCCCCCEEEccCCcccccCCCCccCCCccccccCCCCC
Q 042359          828 FTGRIPESIGVMRSLESIDF------SANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDL  899 (979)
Q Consensus       828 l~~~ip~~~~~l~~L~~LdL------s~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n~l  899 (979)
                      +++ +|..++++++|+.|+|      ++|++.+.+|..+..+++|++|||++|++ +.||.... ..+....+++|.+
T Consensus       525 l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~-~~L~~L~Ls~N~l  599 (636)
T 4eco_A          525 FSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT-PNISVLDIKDNPN  599 (636)
T ss_dssp             CSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-TTCCEEECCSCTT
T ss_pred             CCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh-CcCCEEECcCCCC
Confidence            997 9999999999999999      56889999999999999999999999999 78997532 5666666777743

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=5.8e-39  Score=388.60  Aligned_cols=501  Identities=20%  Similarity=0.190  Sum_probs=329.1

Q ss_pred             CCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCcccccCCCCCCeee
Q 042359          281 SLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLN  360 (979)
Q Consensus       281 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~~l~~L~~L~  360 (979)
                      ++++|+|++|++++..+..|.++++|++|+|++|+++ .+++.+|+++++|++|+|++| .+++..+..|.++++|++|+
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L~  130 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLV  130 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCCEEE
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCEEE
Confidence            5666666666666655566666666666666666666 344556666666666666666 56555555556555555555


Q ss_pred             ccCccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCCCCcEEeccCCcCccc-CcccccCCCCCCEEEcC
Q 042359          361 LRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGL-IPESLGQLSTLRVLRIN  439 (979)
Q Consensus       361 L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~  439 (979)
                      +++|.+.+                             ..+..|+++++|++|++++|.+++. .|..++.+++|++|+++
T Consensus       131 Ls~N~l~~-----------------------------l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~  181 (635)
T 4g8a_A          131 AVETNLAS-----------------------------LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS  181 (635)
T ss_dssp             CTTSCCCC-----------------------------STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred             CCCCcCCC-----------------------------CChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhccc
Confidence            55554443                             3333455566666666666666542 34555666666666666


Q ss_pred             CCcCccccChhhhcCCCCC----cEEEccCCcccccccCCCCCcccccEEecccccCCCCCChhhhCCCCccEEEccCCC
Q 042359          440 DNKLNGTLSAIHFANLTKL----SWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSS  515 (979)
Q Consensus       440 ~n~l~~~l~~~~~~~l~~L----~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~  515 (979)
                      +|++.+. +...+..+.++    ..++++.|.+.......+.                         ...++.+++.+|.
T Consensus       182 ~N~l~~~-~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~-------------------------~~~~~~l~l~~n~  235 (635)
T 4g8a_A          182 SNKIQSI-YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-------------------------EIRLHKLTLRNNF  235 (635)
T ss_dssp             SSCCCEE-CGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTT-------------------------TCEEEEEEEESCC
T ss_pred             Ccccccc-ccccccchhhhhhhhhhhhcccCcccccCccccc-------------------------chhhhhhhhhccc
Confidence            6666532 22234333322    2455555555433222211                         1223333333333


Q ss_pred             CCCCCchHHHhcCCCccEEEcccCcCCC------CCC-CcccccCCcEEEeecccCCCCC------CccCCCCcEEEccc
Q 042359          516 ISDIFPIRFLKSASQLKFLDLGQNQIHG------PIP-NLTEFTGLLILSVYSNNMSGPL------PLISSNLVFLDLSN  582 (979)
Q Consensus       516 l~~~~~~~~~~~~~~L~~L~Ls~n~l~~------~~~-~l~~~~~L~~L~l~~n~l~~~~------~~~~~~L~~L~Ls~  582 (979)
                      .........+..++.++...+..+....      ... .+.....+....+..+......      .....+++.+++.+
T Consensus       236 ~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~  315 (635)
T 4g8a_A          236 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVS  315 (635)
T ss_dssp             SSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEES
T ss_pred             ccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccc
Confidence            3322222233333444433332221111      111 2223334444444433322111      11245788888888


Q ss_pred             ccccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCcccc
Q 042359          583 NLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLS  662 (979)
Q Consensus       583 n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~  662 (979)
                      +.+....+      +.....++.|++.+|.+.+..+.   .+..|+.+++..|.+....  ....+++|+.|++++|.+.
T Consensus       316 ~~~~~~~~------~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~  384 (635)
T 4g8a_A          316 VTIERVKD------FSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLS  384 (635)
T ss_dssp             CEEEECGG------GGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCB
T ss_pred             cccccccc------cccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCCCc--ccccccccccchhhccccc
Confidence            87665322      23367899999999988755443   4567899999999876433  3557899999999999886


Q ss_pred             c--cccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCC-ccccCCCCccEEEccCCccccccC
Q 042359          663 G--NILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLP-TGLCDLAFLQILDIADNNLSGAIP  739 (979)
Q Consensus       663 ~--~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p  739 (979)
                      .  ..+..+..+.+|+++++..|...+. +..+. .+++|+.+++.+|......+ ..+..+++++.+++++|.+.+..|
T Consensus       385 ~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~~~-~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~  462 (635)
T 4g8a_A          385 FKGCCSQSDFGTISLKYLDLSFNGVITM-SSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN  462 (635)
T ss_dssp             EEEECCHHHHSCSCCCEEECCSCSEEEE-CSCCT-TCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCT
T ss_pred             cccccccchhhhhhhhhhhccccccccc-ccccc-ccccccchhhhhccccccccccccccccccccccccccccccccc
Confidence            3  3556677889999999999988754 44444 68999999999988776654 457889999999999999998877


Q ss_pred             cchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcc-cccccccccCCCCC
Q 042359          740 NCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNF-SGKIPLEVTNLKAL  818 (979)
Q Consensus       740 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l-~~~ip~~l~~l~~L  818 (979)
                      ..+..++.+                                              +.|+|++|++ .+.+|..+..+++|
T Consensus       463 ~~~~~~~~L----------------------------------------------~~L~Ls~N~~~~~~~~~~~~~l~~L  496 (635)
T 4g8a_A          463 GIFNGLSSL----------------------------------------------EVLKMAGNSFQENFLPDIFTELRNL  496 (635)
T ss_dssp             TTTTTCTTC----------------------------------------------CEEECTTCEEGGGEECSCCTTCTTC
T ss_pred             cccccchhh----------------------------------------------hhhhhhhcccccccCchhhhhcccc
Confidence            776665555                                              8899999985 45678899999999


Q ss_pred             CEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCcccccCCCCc-cC-CCccccccCC
Q 042359          819 QSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSST-QL-QSFDVSSFAG  896 (979)
Q Consensus       819 ~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~-~~-~~~~~~~~~~  896 (979)
                      ++|||++|++++.+|..|+++++|++|+|++|+|++..|..++.+++|++|||++|++++.+|..- .+ .++...++++
T Consensus       497 ~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~  576 (635)
T 4g8a_A          497 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ  576 (635)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTT
T ss_pred             CEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeC
Confidence            999999999999999999999999999999999999999999999999999999999999888642 22 3455566677


Q ss_pred             C
Q 042359          897 N  897 (979)
Q Consensus       897 n  897 (979)
                      |
T Consensus       577 N  577 (635)
T 4g8a_A          577 N  577 (635)
T ss_dssp             C
T ss_pred             C
Confidence            7

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=7e-41  Score=397.48  Aligned_cols=460  Identities=18%  Similarity=0.205  Sum_probs=291.9

Q ss_pred             ccCEEecCCCCCCcccCcccccCCCCCCeeeccCccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCCCC
Q 042359          330 SISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNI  409 (979)
Q Consensus       330 ~L~~L~L~~n~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L  409 (979)
                      ..+++++++| .+++ +|..+.  ++|++|++++|.+.+..+.    .+..++. |++|++++|.+++..|..|..+++|
T Consensus        32 ~~~~l~ls~~-~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~----~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L  102 (562)
T 3a79_B           32 LESMVDYSNR-NLTH-VPKDLP--PRTKALSLSQNSISELRMP----DISFLSE-LRVLRLSHNRIRSLDFHVFLFNQDL  102 (562)
T ss_dssp             -CCEEECTTS-CCCS-CCTTSC--TTCCEEECCSSCCCCCCGG----GTTTCTT-CCEEECCSCCCCEECTTTTTTCTTC
T ss_pred             CCcEEEcCCC-CCcc-CCCCCC--CCcCEEECCCCCccccChh----hhccCCC-ccEEECCCCCCCcCCHHHhCCCCCC
Confidence            3467777777 6664 444332  5666666666666655544    3444444 6666666666666556666666666


Q ss_pred             cEEeccCCcCcccCcccccCCCCCCEEEcCCCcCccccChhhhcCCCCCcEEEccCCcccccccCCCCCcccccEEeccc
Q 042359          410 VTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRN  489 (979)
Q Consensus       410 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~  489 (979)
                      ++|++++|.++. +|..  .+++|++|++++|++.+.-.+..|.++++|++|++++|.+...   .+....+|       
T Consensus       103 ~~L~Ls~N~l~~-lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L-------  169 (562)
T 3a79_B          103 EYLDVSHNRLQN-ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHL-------  169 (562)
T ss_dssp             CEEECTTSCCCE-ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTS-------
T ss_pred             CEEECCCCcCCc-cCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhc-------
Confidence            666666666653 3333  5666666666666665311112566666666666666655431   22222222       


Q ss_pred             ccCCCCCChhhhCCCCccEEEccCCCC--CCCCchHHHhcCCCccEEEcccCcCCCCCC--CcccccCCcEEEeecccC-
Q 042359          490 CYVGSRFPLWLYSQKHLQFLYLVNSSI--SDIFPIRFLKSASQLKFLDLGQNQIHGPIP--NLTEFTGLLILSVYSNNM-  564 (979)
Q Consensus       490 ~~~~~~~p~~l~~~~~L~~L~Ls~n~l--~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~--~l~~~~~L~~L~l~~n~l-  564 (979)
                                     +|++|++++|.+  .+..|..+..-......+++++|.+.+.++  ....+++|+.+++++|.. 
T Consensus       170 ---------------~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~  234 (562)
T 3a79_B          170 ---------------HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDEN  234 (562)
T ss_dssp             ---------------CEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTT
T ss_pred             ---------------eeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccc
Confidence                           224555555544  333333221100011133455555554444  233445555555555531 


Q ss_pred             ----CCCCCc--cCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccc-----cCCCCCCEEEcc
Q 042359          565 ----SGPLPL--ISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCW-----MSYQNLKTLKLS  633 (979)
Q Consensus       565 ----~~~~~~--~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~-----~~l~~L~~L~Ls  633 (979)
                          .+.++.  ..++++.++++++.+.+.....+...+ ..++|++|++++|.+.|.+|..+     ..++.|+.++++
T Consensus       235 ~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~  313 (562)
T 3a79_B          235 CQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVK  313 (562)
T ss_dssp             HHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEE
T ss_pred             cchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhcc
Confidence                111111  134566666666655543222221111 13478888888888888887776     566666666666


Q ss_pred             CCcccccCCc-ccCC---CCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCc
Q 042359          634 NNKFTGNLPY-SMGS---LTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNK  709 (979)
Q Consensus       634 ~N~l~~~~p~-~l~~---l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~  709 (979)
                      .|.+  .+|. .+..   ..+|++|++++|.+....  ....+++|++|++++|++++.+|.++. .+++|+.|++++|+
T Consensus       314 ~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~N~  388 (562)
T 3a79_B          314 NQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCS-TLKRLQTLILQRNG  388 (562)
T ss_dssp             ECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCC-SCSSCCEEECCSSC
T ss_pred             ccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhc-ccCCCCEEECCCCC
Confidence            6665  3442 2221   256888888888875322  126778888888888888877787776 68888888888888


Q ss_pred             ccC--CCCccccCCCCccEEEccCCccccccCcc-hhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccch
Q 042359          710 FHG--PLPTGLCDLAFLQILDIADNNLSGAIPNC-INNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVD  786 (979)
Q Consensus       710 l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  786 (979)
                      +++  .+|..+..+++|+.|++++|++++.+|.. +..++.                                       
T Consensus       389 l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~---------------------------------------  429 (562)
T 3a79_B          389 LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES---------------------------------------  429 (562)
T ss_dssp             CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT---------------------------------------
T ss_pred             cCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc---------------------------------------
Confidence            886  34567888999999999999998767653 443333                                       


Q ss_pred             hhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCC-CCCCCC
Q 042359          787 YEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPES-MSSLTF  865 (979)
Q Consensus       787 ~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~-l~~l~~  865 (979)
                             |+.|+|++|++++.+|..+.  ++|+.|+|++|+++ .+|..+..+++|++|||++|+++ .+|.. +..+++
T Consensus       430 -------L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~  498 (562)
T 3a79_B          430 -------ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTS  498 (562)
T ss_dssp             -------CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTT
T ss_pred             -------CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCC
Confidence                   48999999999988887765  78999999999999 89988889999999999999999 56665 999999


Q ss_pred             CCEEEccCCcccccCCC
Q 042359          866 LNHLNLSNNNLTGKIPS  882 (979)
Q Consensus       866 L~~L~ls~N~l~g~ip~  882 (979)
                      |++|++++|+++|.+|.
T Consensus       499 L~~L~l~~N~~~c~c~~  515 (562)
T 3a79_B          499 LQYIWLHDNPWDCTCPG  515 (562)
T ss_dssp             CCCEECCSCCBCCCHHH
T ss_pred             CCEEEecCCCcCCCcch
Confidence            99999999999987763

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.1e-39  Score=387.09  Aligned_cols=470  Identities=21%  Similarity=0.237  Sum_probs=269.1

Q ss_pred             CCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCccccCCCCCCEEeccCCcCcccCchhhc
Q 042359          222 LPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLY  301 (979)
Q Consensus       222 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~  301 (979)
                      +...+++++++|++++++....   ++|++|++++|.++         +..|..+.++++|++|++++|++++..|..|.
T Consensus        30 ~~~~~~l~ls~~~L~~ip~~~~---~~L~~L~Ls~N~i~---------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~   97 (562)
T 3a79_B           30 NELESMVDYSNRNLTHVPKDLP---PRTKALSLSQNSIS---------ELRMPDISFLSELRVLRLSHNRIRSLDFHVFL   97 (562)
T ss_dssp             ---CCEEECTTSCCCSCCTTSC---TTCCEEECCSSCCC---------CCCGGGTTTCTTCCEEECCSCCCCEECTTTTT
T ss_pred             cCCCcEEEcCCCCCccCCCCCC---CCcCEEECCCCCcc---------ccChhhhccCCCccEEECCCCCCCcCCHHHhC
Confidence            3344778888888777654322   67788888888776         33446677777888888888887777777777


Q ss_pred             cCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcc-cCcccccCCCCCCeeeccCccCCcccchhhhhcccc
Q 042359          302 RFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEG-RIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGC  380 (979)
Q Consensus       302 ~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~  380 (979)
                      ++++|++|++++|.++ .+ |..  .+++|++|++++| .+.+ ..|..++++++|++|++++|.+.+.           
T Consensus        98 ~l~~L~~L~Ls~N~l~-~l-p~~--~l~~L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~-----------  161 (562)
T 3a79_B           98 FNQDLEYLDVSHNRLQ-NI-SCC--PMASLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAKFRQL-----------  161 (562)
T ss_dssp             TCTTCCEEECTTSCCC-EE-CSC--CCTTCSEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECSBCCTT-----------
T ss_pred             CCCCCCEEECCCCcCC-cc-Ccc--ccccCCEEECCCC-CccccCchHhhcccCcccEEecCCCccccC-----------
Confidence            7788888888888776 55 333  6777777777777 6665 3456777777777777777766542           


Q ss_pred             ccCCCcEEECcCCcCccccccccCCCCCC--cEEeccCCcC--cccCcccccCCC-CCCEEEcCCCcCccccChhhhcCC
Q 042359          381 VSNGLESLDLRSDSIYGHLTDQLGQFKNI--VTLDFANNSI--VGLIPESLGQLS-TLRVLRINDNKLNGTLSAIHFANL  455 (979)
Q Consensus       381 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~Ls~n~l--~~~~p~~l~~l~-~L~~L~L~~n~l~~~l~~~~~~~l  455 (979)
                                           .+..+++|  ++|++++|.+  ++..|..+..+. ..-.+++++|.+.+.++...+..+
T Consensus       162 ---------------------~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l  220 (562)
T 3a79_B          162 ---------------------DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNAL  220 (562)
T ss_dssp             ---------------------TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSE
T ss_pred             ---------------------chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhccccc
Confidence                                 11222222  5555555555  444444444432 111345555555554444445555


Q ss_pred             CCCcEEEccCCcccccccCCCCCcccccEEecccccCCCCCChhhhCCCCccEEEccCCCCCCCCchHHH--hcCCCccE
Q 042359          456 TKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFL--KSASQLKF  533 (979)
Q Consensus       456 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~--~~~~~L~~  533 (979)
                      ++|+.+++++|......                    .......+..+++|+.++++++.+.+.......  ...++|++
T Consensus       221 ~~L~~L~l~~n~~~~~~--------------------l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~  280 (562)
T 3a79_B          221 GHLQLSNIKLNDENCQR--------------------LMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEY  280 (562)
T ss_dssp             EEEEEEEEECCSTTHHH--------------------HHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEE
T ss_pred             ceEEEecccccccccch--------------------HHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccE
Confidence            55555555554311000                    000112234445555555555544332111110  01235556


Q ss_pred             EEcccCcCCCCCCC-cccc--cCCcEEEeecccCCCCCCccCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccC
Q 042359          534 LDLGQNQIHGPIPN-LTEF--TGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLND  610 (979)
Q Consensus       534 L~Ls~n~l~~~~~~-l~~~--~~L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~  610 (979)
                      |++++|.++|.+|. +...  .+                  +..|+.++++.+.+  .+|......+-...         
T Consensus       281 L~l~~n~l~~~ip~~~~~~~~~~------------------L~~L~~~~~~~~~~--~~p~~~~~~~~~~~---------  331 (562)
T 3a79_B          281 LNIYNLTITERIDREEFTYSETA------------------LKSLMIEHVKNQVF--LFSKEALYSVFAEM---------  331 (562)
T ss_dssp             EEEEEEEECSCCCCCCCCCCSCS------------------CCEEEEEEEEECCC--SSCHHHHHHHHHTC---------
T ss_pred             EEEeccEeeccccchhhhccccc------------------chheehhhccccee--ecChhhhhhhhccC---------
Confidence            66666655554442 1000  11                  11222222222222  22211110000112         


Q ss_pred             ccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccc--c
Q 042359          611 NYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVG--N  688 (979)
Q Consensus       611 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~--~  688 (979)
                                     +|++|++++|.+... + ....+++|++|++++|++++.+|..+.++++|++|++++|++++  .
T Consensus       332 ---------------~L~~L~l~~n~~~~~-~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  394 (562)
T 3a79_B          332 ---------------NIKMLSISDTPFIHM-V-CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFK  394 (562)
T ss_dssp             ---------------CCSEEEEESSCCCCC-C-CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTH
T ss_pred             ---------------cceEEEccCCCcccc-c-CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCccc
Confidence                           344444444444311 1 01344555555555555555555555555555555555555553  1


Q ss_pred             CChhHHHhhhccceeeccCCcccCCCCc-cccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcc
Q 042359          689 IPTWIGERFSRMVVLILRSNKFHGPLPT-GLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPID  767 (979)
Q Consensus       689 ip~~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~  767 (979)
                      +|..+. .+++|+.|++++|++++.+|. .+..+++|+.|++++|++++.+|..+.  +                     
T Consensus       395 ~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~---------------------  450 (562)
T 3a79_B          395 VALMTK-NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--P---------------------  450 (562)
T ss_dssp             HHHTTT-TCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--T---------------------
T ss_pred             chhhhc-CCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--C---------------------
Confidence            222333 456666666666666654444 366778888999999988876665442  2                     


Q ss_pred             cceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCC-CCccCCCCEEE
Q 042359          768 VGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPES-IGVMRSLESID  846 (979)
Q Consensus       768 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~~l~~L~~Ld  846 (979)
                                               .|+.|||++|+++ .+|..+..+++|+.|+|++|+++ .+|.. ++.+++|+.|+
T Consensus       451 -------------------------~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~  503 (562)
T 3a79_B          451 -------------------------KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIW  503 (562)
T ss_dssp             -------------------------TCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEE
T ss_pred             -------------------------cCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEE
Confidence                                     2478999999998 78888889999999999999999 67766 99999999999


Q ss_pred             CcCCcccccCC
Q 042359          847 FSANQLSGEIP  857 (979)
Q Consensus       847 Ls~N~l~~~ip  857 (979)
                      |++|++++..|
T Consensus       504 l~~N~~~c~c~  514 (562)
T 3a79_B          504 LHDNPWDCTCP  514 (562)
T ss_dssp             CCSCCBCCCHH
T ss_pred             ecCCCcCCCcc
Confidence            99999998655

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.5e-38  Score=364.20  Aligned_cols=402  Identities=24%  Similarity=0.314  Sum_probs=167.3

Q ss_pred             CCCCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCcccccCCCCCCe
Q 042359          279 LTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKS  358 (979)
Q Consensus       279 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~~l~~L~~  358 (979)
                      .+.|++|++++|.+ +.+|..++++++|++|++++|.+.|.+ |..++++++|+.+++..|.            ..++++
T Consensus        10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~-p~~~~~l~~L~~l~l~~c~------------~~~l~~   75 (454)
T 1jl5_A           10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNA-PPGNGEQREMAVSRLRDCL------------DRQAHE   75 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHTS-CTTSCCCHHHHHHHHHHHH------------HHTCSE
T ss_pred             cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccC-Ccccccchhcchhhhhhhh------------ccCCCE
Confidence            45677777777777 566766777777777777777766665 6666666666665555541            024455


Q ss_pred             eeccCccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCCCCcEEeccCCcCcccCcccccCCCCCCEEEc
Q 042359          359 LNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRI  438 (979)
Q Consensus       359 L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  438 (979)
                      |++++|.+++. |.        .+.+|++|++++|.+++ +|..   +++|++|++++|.+++. |..   .++|++|++
T Consensus        76 L~l~~~~l~~l-p~--------~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L  138 (454)
T 1jl5_A           76 LELNNLGLSSL-PE--------LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGV  138 (454)
T ss_dssp             EECTTSCCSCC-CS--------CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CSC---CTTCCEEEC
T ss_pred             EEecCCccccC-CC--------CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cCC---CCCCCEEEC
Confidence            55555554431 11        11224444444444443 2221   23444444444444431 110   134444444


Q ss_pred             CCCcCccccChhhhcCCCCCcEEEccCCcccccccCCCCCcccccEEecccccCCCCCChhhhCCCCccEEEccCCCCCC
Q 042359          439 NDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISD  518 (979)
Q Consensus       439 ~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~l~~  518 (979)
                      ++|++++ +|                                                  .+..+++|++|++++|++.+
T Consensus       139 ~~n~l~~-lp--------------------------------------------------~~~~l~~L~~L~l~~N~l~~  167 (454)
T 1jl5_A          139 SNNQLEK-LP--------------------------------------------------ELQNSSFLKIIDVDNNSLKK  167 (454)
T ss_dssp             CSSCCSS-CC--------------------------------------------------CCTTCTTCCEEECCSSCCSC
T ss_pred             cCCCCCC-Cc--------------------------------------------------ccCCCCCCCEEECCCCcCcc
Confidence            4444432 33                                                  13344444444444444443


Q ss_pred             CCchHHHhcCCCccEEEcccCcCCCCCCCcccccCCcEEEeecccCCCCCCccCCCCcEEEcccccccccCChhhhhccc
Q 042359          519 IFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRIN  598 (979)
Q Consensus       519 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~  598 (979)
                      . |.    ..++|++|++++|.+++ +|.+..+++|+.|++++|.+++ +|..+++|++|++++|.+. .+|.     ++
T Consensus       168 l-p~----~~~~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~n~l~-~lp~-----~~  234 (454)
T 1jl5_A          168 L-PD----LPPSLEFIAAGNNQLEE-LPELQNLPFLTAIYADNNSLKK-LPDLPLSLESIVAGNNILE-ELPE-----LQ  234 (454)
T ss_dssp             C-CC----CCTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCSS-CCCCCTTCCEEECCSSCCS-SCCC-----CT
T ss_pred             c-CC----CcccccEEECcCCcCCc-CccccCCCCCCEEECCCCcCCc-CCCCcCcccEEECcCCcCC-cccc-----cC
Confidence            2 21    12356666666666665 3455555555555555555554 3333345555555555554 2331     23


Q ss_pred             CCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEE
Q 042359          599 ETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESL  678 (979)
Q Consensus       599 ~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  678 (979)
                      .+++|+.|++++|++.+ +|..   .++|++|++++|++++ +|..                           .++|++|
T Consensus       235 ~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---------------------------~~~L~~L  282 (454)
T 1jl5_A          235 NLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---------------------------PQSLTFL  282 (454)
T ss_dssp             TCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---------------------------CTTCCEE
T ss_pred             CCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---------------------------cCcCCEE
Confidence            34555555555555443 2221   2344444444444442 3322                           2444455


Q ss_pred             eccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCC-CCccEEEccCCccccccCcchhhcccCccccccccc
Q 042359          679 DVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDL-AFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRS  757 (979)
Q Consensus       679 ~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~  757 (979)
                      ++++|++++ +|.    ..++|+.|++++|++++ ++    .+ ++|+.|++++|++++ +|..+   +           
T Consensus       283 ~ls~N~l~~-l~~----~~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~~---~-----------  337 (454)
T 1jl5_A          283 DVSENIFSG-LSE----LPPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPALP---P-----------  337 (454)
T ss_dssp             ECCSSCCSE-ESC----CCTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCCC---T-----------
T ss_pred             ECcCCccCc-ccC----cCCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-ccccC---C-----------
Confidence            555554443 111    01344555555555543 11    12 356666666666653 44321   1           


Q ss_pred             ccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCccee--ccCCC
Q 042359          758 VQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTG--RIPES  835 (979)
Q Consensus       758 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~--~ip~~  835 (979)
                                                         .|+.||+++|+++ .+|.   .+++|+.|++++|++++  .+|.+
T Consensus       338 -----------------------------------~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~  378 (454)
T 1jl5_A          338 -----------------------------------RLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPES  378 (454)
T ss_dssp             -----------------------------------TCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTT
T ss_pred             -----------------------------------cCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHH
Confidence                                               2256666666666 3554   35666666666666666  55555


Q ss_pred             CCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCcccc--cCCC
Q 042359          836 IGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTG--KIPS  882 (979)
Q Consensus       836 ~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g--~ip~  882 (979)
                      ++.+        +.|++.|.+|..   +++|++||+++|+++|  .||.
T Consensus       379 l~~L--------~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~  416 (454)
T 1jl5_A          379 VEDL--------RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPE  416 (454)
T ss_dssp             CCEE--------ECCC---------------------------------
T ss_pred             HHhh--------hhcccccccccc---cCcCCEEECCCCcCCccccchh
Confidence            4432        345555555553   3566667777777765  5554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.1e-37  Score=360.75  Aligned_cols=381  Identities=21%  Similarity=0.225  Sum_probs=239.3

Q ss_pred             CCCcEEeccCCcCcccCcccccCCCCCCEEEcCCCcCccccChhhhcCCCCCcEEEccCCcccccccCCCCCcccccEEe
Q 042359          407 KNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALG  486 (979)
Q Consensus       407 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~  486 (979)
                      ++|++|++++|.+++..|..|.++++|++|++++|.+.+.++...|.++++|++|++++|.+.......+..+++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            45555555555555555555555555566666555555455444555555555555555555443333333333444444


Q ss_pred             cccccCCCCCChh--hhCCCCccEEEccCCCCCCCCchHHHhcCCCccEEEcccCcCCCCCC-CcccccCCcEEEeeccc
Q 042359          487 LRNCYVGSRFPLW--LYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIP-NLTEFTGLLILSVYSNN  563 (979)
Q Consensus       487 l~~~~~~~~~p~~--l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~l~~~~~L~~L~l~~n~  563 (979)
                      +++|.+.+..|..  +..+++|++|++++|.+.+..|..++..+++|++|++++|.+.+..+ .+..+.           
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-----------  178 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQ-----------  178 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGT-----------
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccc-----------
Confidence            4444433322222  55556666666666666666555544555666666666666555444 222111           


Q ss_pred             CCCCCCccCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCc
Q 042359          564 MSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPY  643 (979)
Q Consensus       564 l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  643 (979)
                              ..+++.|++++|.+.+..+..+..                    .....+..+++|++|++++|++++..|.
T Consensus       179 --------~~~L~~L~l~~n~l~~~~~~~~~~--------------------~~~~~~~~~~~L~~L~Ls~n~l~~~~~~  230 (455)
T 3v47_A          179 --------GKHFTLLRLSSITLQDMNEYWLGW--------------------EKCGNPFKNTSITTLDLSGNGFKESMAK  230 (455)
T ss_dssp             --------TCEEEEEECTTCBCTTCSTTCTTH--------------------HHHCCTTTTCEEEEEECTTSCCCHHHHH
T ss_pred             --------cccccccccccCcccccchhhccc--------------------cccccccccceeeeEecCCCcccccchh
Confidence                    123344444444443322211100                    0001122344555555555555555444


Q ss_pred             ccCCC---CCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHH-HhhhccceeeccCCcccCCCCcccc
Q 042359          644 SMGSL---TSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIG-ERFSRMVVLILRSNKFHGPLPTGLC  719 (979)
Q Consensus       644 ~l~~l---~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~-~~l~~L~~L~L~~n~l~~~~p~~l~  719 (979)
                      .+...   ++|+.|++++|...+....              .+.+.+..+..+. ...++|+.|++++|++++..|..+.
T Consensus       231 ~~~~~~~~~~L~~L~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  296 (455)
T 3v47_A          231 RFFDAIAGTKIQSLILSNSYNMGSSFG--------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFS  296 (455)
T ss_dssp             HHHHHTTTCCEEEEECTTCTTTSCCTT--------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTT
T ss_pred             hhhccccccceeeEeeccccccccccc--------------hhhhccCcccccccccccCceEEEecCccccccchhhcc
Confidence            43322   5566666666655432110              1111111111111 0246788888888888888888899


Q ss_pred             CCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEec
Q 042359          720 DLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDI  799 (979)
Q Consensus       720 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdL  799 (979)
                      .+++|+.|++++|++++..|..+.+++.|                                              +.|+|
T Consensus       297 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L----------------------------------------------~~L~L  330 (455)
T 3v47_A          297 HFTDLEQLTLAQNEINKIDDNAFWGLTHL----------------------------------------------LKLNL  330 (455)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTC----------------------------------------------CEEEC
T ss_pred             cCCCCCEEECCCCcccccChhHhcCcccC----------------------------------------------CEEEC
Confidence            99999999999999998888888776666                                              88999


Q ss_pred             ccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCccccc
Q 042359          800 SRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGK  879 (979)
Q Consensus       800 s~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~  879 (979)
                      ++|++++..|..++++++|++|+|++|++++..|..|+.+++|++|||++|++++..+..++.+++|++|++++|+++|.
T Consensus       331 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  410 (455)
T 3v47_A          331 SQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  410 (455)
T ss_dssp             CSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccC
Confidence            99999988899999999999999999999999999999999999999999999987777889999999999999999999


Q ss_pred             CCCCccC
Q 042359          880 IPSSTQL  886 (979)
Q Consensus       880 ip~~~~~  886 (979)
                      +|....+
T Consensus       411 ~~~~~~l  417 (455)
T 3v47_A          411 CPRIDYL  417 (455)
T ss_dssp             TTTTHHH
T ss_pred             CCcchHH
Confidence            9975444

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.2e-38  Score=347.55  Aligned_cols=129  Identities=39%  Similarity=0.659  Sum_probs=111.9

Q ss_pred             CCCHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCcc--ccceeccCCC--CcEEEEECCCCCCCCchhhHHHhhcccccc-
Q 042359           39 GCLGSEKEALLSFKRDLKDPSNRLASWSGNGDCCA--WAGVFCDNIT--GHVLHLDLRNPFNYHKESEYEAIRRTALVG-  113 (979)
Q Consensus        39 ~c~~~~~~~ll~~k~~~~~~~~~l~~W~~~~~~c~--w~gv~c~~~~--~~v~~L~L~~~~~~~~~~~~~~~~~~~l~~-  113 (979)
                      .|.++|++||++||+++.+|. .+++|..+.+||.  |.||+|+...  ++|++|+|++               +.+.| 
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~---------------~~l~~~   65 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG---------------LNLPKP   65 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEEC---------------CCCSSC
T ss_pred             CCCHHHHHHHHHHHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCC---------------CCccCC
Confidence            599999999999999998876 7899988889998  9999998654  8999999998               47888 


Q ss_pred             -cccccccCCCCCCEEeCCC-CCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCcc
Q 042359          114 -KINPSLLDLKHLSYLDLSF-NDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYL  184 (979)
Q Consensus       114 -~~~~~l~~l~~L~~L~Ls~-n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i  184 (979)
                       .+|+.+.++++|++|++++ |.+.+. +|..|+++++|++|++++|.+++.+|..++++++|++|++++|.+
T Consensus        66 ~~~~~~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l  137 (313)
T 1ogq_A           66 YPIPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL  137 (313)
T ss_dssp             EECCGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred             cccChhHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCcc
Confidence             8889999999999999995 888875 788899999999999999999888888888888888877777654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.3e-38  Score=364.47  Aligned_cols=396  Identities=21%  Similarity=0.276  Sum_probs=256.8

Q ss_pred             CcEEECcCCcCccccccccCCCCCCcEEeccCCcCcccCcccccCCCCCCEEEcCCCcCccccChhhhcCCCCCcEEEcc
Q 042359          385 LESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVD  464 (979)
Q Consensus       385 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~  464 (979)
                      |++|++++|.+ +.+|..++++++|++|++++|.+.+.+|..++.+++|+.+++.+|..            .+++.|+++
T Consensus        13 L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~------------~~l~~L~l~   79 (454)
T 1jl5_A           13 LQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD------------RQAHELELN   79 (454)
T ss_dssp             ----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH------------HTCSEEECT
T ss_pred             chhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc------------cCCCEEEec
Confidence            77777777777 67777788888888888888888888888777777653333222210            233444444


Q ss_pred             CCcccccccCCCCCcccccEEecccccCCCCCChhhhCCCCccEEEccCCCCCCCCchHHHhcCCCccEEEcccCcCCCC
Q 042359          465 GNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGP  544 (979)
Q Consensus       465 ~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~  544 (979)
                      +|.++....    -+++|+.|++++|.+.+ +|..   .++|++|++++|++.+...     ..++|++|++++|.+++ 
T Consensus        80 ~~~l~~lp~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~-----~~~~L~~L~L~~n~l~~-  145 (454)
T 1jl5_A           80 NLGLSSLPE----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSD-----LPPLLEYLGVSNNQLEK-  145 (454)
T ss_dssp             TSCCSCCCS----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCS-----CCTTCCEEECCSSCCSS-
T ss_pred             CCccccCCC----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccC-----CCCCCCEEECcCCCCCC-
Confidence            444333211    12345555555555544 4432   3678888888888776432     12578889999888887 


Q ss_pred             CCCcccccCCcEEEeecccCCCCCCccCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccccCC
Q 042359          545 IPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSY  624 (979)
Q Consensus       545 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l  624 (979)
                      +|.+..+++|++|++++|++++ +|..+.+|++|++++|.+++ +|.     ++.+++|+.|++++|++.+ +|...   
T Consensus       146 lp~~~~l~~L~~L~l~~N~l~~-lp~~~~~L~~L~L~~n~l~~-l~~-----~~~l~~L~~L~l~~N~l~~-l~~~~---  214 (454)
T 1jl5_A          146 LPELQNSSFLKIIDVDNNSLKK-LPDLPPSLEFIAAGNNQLEE-LPE-----LQNLPFLTAIYADNNSLKK-LPDLP---  214 (454)
T ss_dssp             CCCCTTCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSS-CCC-----CTTCTTCCEEECCSSCCSS-CCCCC---
T ss_pred             CcccCCCCCCCEEECCCCcCcc-cCCCcccccEEECcCCcCCc-Ccc-----ccCCCCCCEEECCCCcCCc-CCCCc---
Confidence            5678888889999999988886 56667799999999999987 442     4668999999999999986 45432   


Q ss_pred             CCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceee
Q 042359          625 QNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLI  704 (979)
Q Consensus       625 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~  704 (979)
                      ++|++|++++|+++ .+| .++.+++|++|++++|++++ +|..   .++|++|++++|++++ +|..    .++|+.|+
T Consensus       215 ~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~----~~~L~~L~  283 (454)
T 1jl5_A          215 LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL----PQSLTFLD  283 (454)
T ss_dssp             TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC----CTTCCEEE
T ss_pred             CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc----cCcCCEEE
Confidence            58999999999998 677 48899999999999999985 5542   4789999999999985 7753    47899999


Q ss_pred             ccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCcc
Q 042359          705 LRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEM  784 (979)
Q Consensus       705 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  784 (979)
                      +++|++++. |..   .++|+.|++++|++++ +|.    +                                       
T Consensus       284 ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~-i~~----~---------------------------------------  315 (454)
T 1jl5_A          284 VSENIFSGL-SEL---PPNLYYLNASSNEIRS-LCD----L---------------------------------------  315 (454)
T ss_dssp             CCSSCCSEE-SCC---CTTCCEEECCSSCCSE-ECC----C---------------------------------------
T ss_pred             CcCCccCcc-cCc---CCcCCEEECcCCcCCc-ccC----C---------------------------------------
Confidence            999999862 211   2689999999998874 221    1                                       


Q ss_pred             chhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccc--cCCCCCCC
Q 042359          785 VDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSG--EIPESMSS  862 (979)
Q Consensus       785 ~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~--~ip~~l~~  862 (979)
                            ...|+.|++++|++++ +|..   +++|+.|++++|+++ .+|.   .+++|++||+++|++++  .+|.+++.
T Consensus       316 ------~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~  381 (454)
T 1jl5_A          316 ------PPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVED  381 (454)
T ss_dssp             ------CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE
T ss_pred             ------cCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHh
Confidence                  1235889999999996 7765   588999999999999 6777   47899999999999998  78876653


Q ss_pred             CCCCCEEEccCCcccccCCCCccCCCccccccCCCCCCC
Q 042359          863 LTFLNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLCG  901 (979)
Q Consensus       863 l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n~lcg  901 (979)
                              ++.|++.|.+|..  +..+...++++|.+.|
T Consensus       382 --------L~~n~~~~~i~~~--~~~L~~L~ls~N~l~~  410 (454)
T 1jl5_A          382 --------LRMNSHLAEVPEL--PQNLKQLHVETNPLRE  410 (454)
T ss_dssp             --------EECCC--------------------------
T ss_pred             --------hhhcccccccccc--cCcCCEEECCCCcCCc
Confidence                    4568889999874  4566667788887765

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=3.4e-36  Score=348.15  Aligned_cols=396  Identities=17%  Similarity=0.162  Sum_probs=272.2

Q ss_pred             CEEECCCCCCCCCCCCCcccccCCccccCCCCCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCcccccccC
Q 042359          250 TVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLT  329 (979)
Q Consensus       250 ~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~  329 (979)
                      +.++.+++.++.          +|. +  .++|++|++++|.+++..|..+.++++|++|++++|.+.+.+++..|.+++
T Consensus        13 ~~~~c~~~~l~~----------lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~   79 (455)
T 3v47_A           13 YNAICINRGLHQ----------VPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS   79 (455)
T ss_dssp             TEEECCSSCCSS----------CCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCT
T ss_pred             cccCcCCCCccc----------CCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccc
Confidence            345566666653          444 2  267888888888888777888888888888888888887677677788888


Q ss_pred             ccCEEecCCCCCCcccCcccccCCCCCCeeeccCccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCCCC
Q 042359          330 SISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNI  409 (979)
Q Consensus       330 ~L~~L~L~~n~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L  409 (979)
                      +|++|++++| .+.+..|..+..+++|++|++++|.+.+..+.    .                       ..+..+++|
T Consensus        80 ~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~-----------------------~~~~~l~~L  131 (455)
T 3v47_A           80 SLIILKLDYN-QFLQLETGAFNGLANLEVLTLTQCNLDGAVLS----G-----------------------NFFKPLTSL  131 (455)
T ss_dssp             TCCEEECTTC-TTCEECTTTTTTCTTCCEEECTTSCCBTHHHH----S-----------------------STTTTCTTC
T ss_pred             cCCEEeCCCC-ccCccChhhccCcccCCEEeCCCCCCCccccC----c-----------------------ccccCcccC
Confidence            8888888888 77777788888888888888887777654433    1                       124445555


Q ss_pred             cEEeccCCcCcccCccc-ccCCCCCCEEEcCCCcCccccChhhhcCC--CCCcEEEccCCcccccccCCCCCcccccEEe
Q 042359          410 VTLDFANNSIVGLIPES-LGQLSTLRVLRINDNKLNGTLSAIHFANL--TKLSWFRVDGNKLTLGVKHDWIPPFQLVALG  486 (979)
Q Consensus       410 ~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~l~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~  486 (979)
                      ++|++++|.+++..|.. +..+++|++|++++|++.+..+. .+..+  .+|+.+++++|.+.......+..        
T Consensus       132 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~--------  202 (455)
T 3v47_A          132 EMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEE-DLLNFQGKHFTLLRLSSITLQDMNEYWLGW--------  202 (455)
T ss_dssp             CEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTT-TSGGGTTCEEEEEECTTCBCTTCSTTCTTH--------
T ss_pred             CEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChh-hhhccccccccccccccCcccccchhhccc--------
Confidence            55555555555554443 45555555555555555433222 23322  34444444444433221110000        


Q ss_pred             cccccCCCCCChhhhCCCCccEEEccCCCCCCCCchHHHhc--CCCccEEEcccCcCCCCCCCcccccCCcEEEeecccC
Q 042359          487 LRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKS--ASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNM  564 (979)
Q Consensus       487 l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~--~~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l  564 (979)
                              .....+..+++|++|++++|.+.+..|..+...  .++|+.|++++|...+.......              
T Consensus       203 --------~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--------------  260 (455)
T 3v47_A          203 --------EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN--------------  260 (455)
T ss_dssp             --------HHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCS--------------
T ss_pred             --------cccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhh--------------
Confidence                    000112345677788888888777766665443  25677777777765543221101              


Q ss_pred             CCCCCccCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcc
Q 042359          565 SGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYS  644 (979)
Q Consensus       565 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  644 (979)
                                          +.+..+..+..  ...++|+.|++++|.+.+..|..+..+++|++|++++|++++..|..
T Consensus       261 --------------------~~~~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  318 (455)
T 3v47_A          261 --------------------FKDPDNFTFKG--LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNA  318 (455)
T ss_dssp             --------------------SCCCCTTTTGG--GTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT
T ss_pred             --------------------hccCccccccc--ccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhH
Confidence                                11111111100  12467888888888888888888899999999999999999888888


Q ss_pred             cCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCc
Q 042359          645 MGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFL  724 (979)
Q Consensus       645 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  724 (979)
                      |..+++|++|++++|++++..|..+.++++|++|++++|++++..|.++. .+++|++|++++|++++..+..+..+++|
T Consensus       319 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  397 (455)
T 3v47_A          319 FWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFL-GLPNLKELALDTNQLKSVPDGIFDRLTSL  397 (455)
T ss_dssp             TTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             hcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcc-ccccccEEECCCCccccCCHhHhccCCcc
Confidence            99999999999999999888888899999999999999999887787776 78999999999999997666778899999


Q ss_pred             cEEEccCCccccccCc
Q 042359          725 QILDIADNNLSGAIPN  740 (979)
Q Consensus       725 ~~L~Ls~n~l~~~~p~  740 (979)
                      +.|++++|++++..|.
T Consensus       398 ~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          398 QKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             CEEECCSSCBCCCTTT
T ss_pred             cEEEccCCCcccCCCc
Confidence            9999999999988873

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=3.2e-35  Score=336.80  Aligned_cols=196  Identities=20%  Similarity=0.171  Sum_probs=121.1

Q ss_pred             ccccccccccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCC
Q 042359          109 TALVGKINPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVD  188 (979)
Q Consensus       109 ~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~  188 (979)
                      ....+..+.+++++++|++|++++|.+++  +| .++.+++|++|++++|++++. |  ++.+++|++|++++|.+..++
T Consensus        28 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~~  101 (457)
T 3bz5_A           28 FEMQATDTISEEQLATLTSLDCHNSSITD--MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNLD  101 (457)
T ss_dssp             TTCCTTSEEEHHHHTTCCEEECCSSCCCC--CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC
T ss_pred             cCcCcccccChhHcCCCCEEEccCCCccc--Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCceee
Confidence            34455556678889999999999999987  45 588899999999999999864 4  888899999999998877653


Q ss_pred             ccccccCCCCCCEEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcc
Q 042359          189 NFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWV  268 (979)
Q Consensus       189 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  268 (979)
                          ++++++|++|++++|.+++.+     +..+++|++|++++|+++++   .                          
T Consensus       102 ----~~~l~~L~~L~L~~N~l~~l~-----~~~l~~L~~L~l~~N~l~~l---~--------------------------  143 (457)
T 3bz5_A          102 ----VTPLTKLTYLNCDTNKLTKLD-----VSQNPLLTYLNCARNTLTEI---D--------------------------  143 (457)
T ss_dssp             ----CTTCTTCCEEECCSSCCSCCC-----CTTCTTCCEEECTTSCCSCC---C--------------------------
T ss_pred             ----cCCCCcCCEEECCCCcCCeec-----CCCCCcCCEEECCCCcccee---c--------------------------
Confidence                456666666666666655431     34444444444444444443   1                          


Q ss_pred             cccCCccccCCCCCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCcc
Q 042359          269 FGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPR  348 (979)
Q Consensus       269 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~  348 (979)
                             ++.+++|++|++++|...+.+  .+..+++|++|++++|.+++ + +  ++.+++|++|++++| .+++.   
T Consensus       144 -------l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l-~--l~~l~~L~~L~l~~N-~l~~~---  206 (457)
T 3bz5_A          144 -------VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-L-D--VSQNKLLNRLNCDTN-NITKL---  206 (457)
T ss_dssp             -------CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-C-C--CTTCTTCCEEECCSS-CCSCC---
T ss_pred             -------cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-e-c--cccCCCCCEEECcCC-cCCee---
Confidence                   344455555555555333333  24455555555555555553 3 2  555566666666666 44432   


Q ss_pred             cccCCCCCCeeeccCcc
Q 042359          349 SMASLCNLKSLNLRGVH  365 (979)
Q Consensus       349 ~l~~l~~L~~L~L~~n~  365 (979)
                      .+..+++|+.|++++|+
T Consensus       207 ~l~~l~~L~~L~Ls~N~  223 (457)
T 3bz5_A          207 DLNQNIQLTFLDCSSNK  223 (457)
T ss_dssp             CCTTCTTCSEEECCSSC
T ss_pred             ccccCCCCCEEECcCCc
Confidence            24444444444444443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.6e-34  Score=330.89  Aligned_cols=350  Identities=23%  Similarity=0.247  Sum_probs=222.7

Q ss_pred             CcEEECcCCcCccccccccCCCCCCcEEeccCCcCcccCcccccCCCCCCEEEcCCCcCccccChhhhcCCCCCcEEEcc
Q 042359          385 LESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVD  464 (979)
Q Consensus       385 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~  464 (979)
                      |++|++++|.+++. | .++.+++|++|++++|.+++. |  ++.+++|++|++++|++++ ++   +.++++|++|+++
T Consensus        44 L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~---~~~l~~L~~L~L~  114 (457)
T 3bz5_A           44 LTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD---VTPLTKLTYLNCD  114 (457)
T ss_dssp             CCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC---CTTCTTCCEEECC
T ss_pred             CCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee---cCCCCcCCEEECC
Confidence            55555555555543 2 455555555555555555543 2  4555555555555555543 22   4455555555555


Q ss_pred             CCcccccccCCCCCcccccEEecccccCCCCCChhhhCCCCccEEEccCCCCCCCCchHHHhcCCCccEEEcccCcCCCC
Q 042359          465 GNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGP  544 (979)
Q Consensus       465 ~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~  544 (979)
                      +|.++.                         +|  +..+++|++|++++|++.+. +   +..+++|++|++++|...+.
T Consensus       115 ~N~l~~-------------------------l~--~~~l~~L~~L~l~~N~l~~l-~---l~~l~~L~~L~l~~n~~~~~  163 (457)
T 3bz5_A          115 TNKLTK-------------------------LD--VSQNPLLTYLNCARNTLTEI-D---VSHNTQLTELDCHLNKKITK  163 (457)
T ss_dssp             SSCCSC-------------------------CC--CTTCTTCCEEECTTSCCSCC-C---CTTCTTCCEEECTTCSCCCC
T ss_pred             CCcCCe-------------------------ec--CCCCCcCCEEECCCCcccee-c---cccCCcCCEEECCCCCcccc
Confidence            554442                         12  44556666666666666654 2   23455666666666654444


Q ss_pred             CCCcccccCCcEEEeecccCCCCCCccCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccccCC
Q 042359          545 IPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSY  624 (979)
Q Consensus       545 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l  624 (979)
                      + .+..+++|+.|++++|.+++.....+++|+.|++++|.+++.       .++.+++|+.|++++|++++ +|  +..+
T Consensus       164 ~-~~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~-------~l~~l~~L~~L~Ls~N~l~~-ip--~~~l  232 (457)
T 3bz5_A          164 L-DVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKL-------DLNQNIQLTFLDCSSNKLTE-ID--VTPL  232 (457)
T ss_dssp             C-CCTTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSSCCSCC-------CCTTCTTCSEEECCSSCCSC-CC--CTTC
T ss_pred             c-ccccCCcCCEEECCCCccceeccccCCCCCEEECcCCcCCee-------ccccCCCCCEEECcCCcccc-cC--cccc
Confidence            4 244555566666666655553323345666666666666553       13446667777777777665 44  5666


Q ss_pred             CCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceee
Q 042359          625 QNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLI  704 (979)
Q Consensus       625 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~  704 (979)
                      ++|++|++++|++++. |  ++.+++|+.|++++|              +|+.|++++|++.+.+|.  . .+++|+.|+
T Consensus       233 ~~L~~L~l~~N~l~~~-~--~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~~--~-~l~~L~~L~  292 (457)
T 3bz5_A          233 TQLTYFDCSVNPLTEL-D--VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQA--E-GCRKIKELD  292 (457)
T ss_dssp             TTCSEEECCSSCCSCC-C--CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEEC--T-TCTTCCCCC
T ss_pred             CCCCEEEeeCCcCCCc-C--HHHCCCCCEEeccCC--------------CCCEEECCCCccCCcccc--c-ccccCCEEE
Confidence            6777777777776653 2  344566666666554              456778888888877773  2 578888888


Q ss_pred             ccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCcc
Q 042359          705 LRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEM  784 (979)
Q Consensus       705 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  784 (979)
                      +++|.+.+.+|.   ..+.|+.|++++|.                                                   
T Consensus       293 Ls~n~~l~~l~~---~~~~L~~L~l~~~~---------------------------------------------------  318 (457)
T 3bz5_A          293 VTHNTQLYLLDC---QAAGITELDLSQNP---------------------------------------------------  318 (457)
T ss_dssp             CTTCTTCCEEEC---TTCCCSCCCCTTCT---------------------------------------------------
T ss_pred             CCCCcccceecc---CCCcceEechhhcc---------------------------------------------------
Confidence            888887777764   33455555565541                                                   


Q ss_pred             chhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCC
Q 042359          785 VDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLT  864 (979)
Q Consensus       785 ~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~  864 (979)
                              .|+.|++++|++++ +|  ++++++|+.|++++|++++        ++.|+.|++++|+++|.     ..+.
T Consensus       319 --------~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~  374 (457)
T 3bz5_A          319 --------KLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTI  374 (457)
T ss_dssp             --------TCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEE
T ss_pred             --------cCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceee
Confidence                    23789999999997 43  8999999999999999996        24677788999999987     3456


Q ss_pred             CCCEEEccCCcccccCCCC
Q 042359          865 FLNHLNLSNNNLTGKIPSS  883 (979)
Q Consensus       865 ~L~~L~ls~N~l~g~ip~~  883 (979)
                      .|..+|+++|+++|.||..
T Consensus       375 ~l~~l~l~~N~l~g~ip~~  393 (457)
T 3bz5_A          375 TMPKETLTNNSLTIAVSPD  393 (457)
T ss_dssp             ECCCBCCBTTBEEEECCTT
T ss_pred             ecCccccccCcEEEEcChh
Confidence            6788999999999999964

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=6.4e-35  Score=318.04  Aligned_cols=258  Identities=31%  Similarity=0.563  Sum_probs=232.8

Q ss_pred             CcccEEeccCccccc--cCCccccCCCCCCEEEccC-CcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCE
Q 042359          601 KSLNALQLNDNYLNG--ELPDCWMSYQNLKTLKLSN-NKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALES  677 (979)
Q Consensus       601 ~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  677 (979)
                      ..++.|++++|.+.+  .+|..+.++++|++|++++ |.+.+.+|..|+.+++|++|++++|++++.+|..+.++++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            467788888888887  7888888888899999984 8888888888888899999999999998888888889999999


Q ss_pred             EeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCC-CccEEEccCCccccccCcchhhcccCcccccccc
Q 042359          678 LDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLA-FLQILDIADNNLSGAIPNCINNLTGMVTACSFTR  756 (979)
Q Consensus       678 L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~  756 (979)
                      |++++|.+++.+|..+. .+++|++|++++|++++.+|..+..++ .|+.|++++|++++.+|..+..++ |        
T Consensus       130 L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L--------  199 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L--------  199 (313)
T ss_dssp             EECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C--------
T ss_pred             EeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c--------
Confidence            99999999888888887 689999999999999988999999998 999999999999999998887654 4        


Q ss_pred             cccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCC
Q 042359          757 SVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESI  836 (979)
Q Consensus       757 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~  836 (979)
                                                            +.|+|++|++++.+|..++.+++|+.|+|++|++++.+|. +
T Consensus       200 --------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~  240 (313)
T 1ogq_A          200 --------------------------------------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-V  240 (313)
T ss_dssp             --------------------------------------SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-C
T ss_pred             --------------------------------------cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-c
Confidence                                                  8899999999999999999999999999999999988877 8


Q ss_pred             CccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCcccccCCCCccCCCccccccCCC-CCCCCCCCCCC
Q 042359          837 GVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGN-DLCGAPLPKNC  908 (979)
Q Consensus       837 ~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~lcg~~~~~~c  908 (979)
                      ..+++|++|||++|++++.+|..+..+++|++||+++|+++|.+|...++..+....+.+| .+||.|+. .|
T Consensus       241 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C  312 (313)
T 1ogq_A          241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             cccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence            8899999999999999999999999999999999999999999999988999999999999 69998876 56

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=8.6e-33  Score=319.70  Aligned_cols=347  Identities=27%  Similarity=0.376  Sum_probs=243.8

Q ss_pred             CCCCCcEEeccCCcCcccCcccccCCCCCCEEEcCCCcCccccChhhhcCCCCCcEEEccCCcccccccCCCCCcccccE
Q 042359          405 QFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVA  484 (979)
Q Consensus       405 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~  484 (979)
                      .+++++.|+++++.+.. +| .+..+++|++|++++|.+.+ ++.  +.++++|++|++++|.+....            
T Consensus        44 ~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~------------  106 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTD-ITP--LKNLTKLVDILMNNNQIADIT------------  106 (466)
T ss_dssp             HHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCCG------------
T ss_pred             HhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCC-chh--hhccccCCEEECCCCccccCh------------
Confidence            45788899999988875 34 37788889999999998874 333  777888888888777665322            


Q ss_pred             EecccccCCCCCChhhhCCCCccEEEccCCCCCCCCchHHHhcCCCccEEEcccCcCCCCCCCcccccCCcEEEeecccC
Q 042359          485 LGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNM  564 (979)
Q Consensus       485 L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l  564 (979)
                                   . +..+++|++|++++|.+.+..+   +..+++|++|++++|.+.+. +.+..+++|+.|+++    
T Consensus       107 -------------~-~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~----  164 (466)
T 1o6v_A          107 -------------P-LANLTNLTGLTLFNNQITDIDP---LKNLTNLNRLELSSNTISDI-SALSGLTSLQQLSFG----  164 (466)
T ss_dssp             -------------G-GTTCTTCCEEECCSSCCCCCGG---GTTCTTCSEEEEEEEEECCC-GGGTTCTTCSEEEEE----
T ss_pred             -------------h-hcCCCCCCEEECCCCCCCCChH---HcCCCCCCEEECCCCccCCC-hhhccCCcccEeecC----
Confidence                         2 5556667777777776666543   35566777777777766542 334444444444443    


Q ss_pred             CCCCCccCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcc
Q 042359          565 SGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYS  644 (979)
Q Consensus       565 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  644 (979)
                                        |.+.+..      .+..+++|+.|++++|.+.+.  ..+..+++|++|++++|.+++..|  
T Consensus       165 ------------------~~~~~~~------~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--  216 (466)
T 1o6v_A          165 ------------------NQVTDLK------PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--  216 (466)
T ss_dssp             ------------------ESCCCCG------GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--
T ss_pred             ------------------CcccCch------hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--
Confidence                              1222111      134466677777777766643  236667777777777777775444  


Q ss_pred             cCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCc
Q 042359          645 MGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFL  724 (979)
Q Consensus       645 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  724 (979)
                      ++.+++|++|++++|++++.  ..+..+++|++|++++|.+.+..|  +. .+++|+.|++++|.+++..+  +..+++|
T Consensus       217 ~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L  289 (466)
T 1o6v_A          217 LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LS-GLTKLTELKLGANQISNISP--LAGLTAL  289 (466)
T ss_dssp             GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GT-TCTTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred             ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hh-cCCCCCEEECCCCccCcccc--ccCCCcc
Confidence            56677777777777777653  356777788888888887775433  33 57788888888888876444  7788888


Q ss_pred             cEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcc
Q 042359          725 QILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNF  804 (979)
Q Consensus       725 ~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l  804 (979)
                      +.|++++|++.+..|  +..+++                                              |+.|+|++|++
T Consensus       290 ~~L~L~~n~l~~~~~--~~~l~~----------------------------------------------L~~L~L~~n~l  321 (466)
T 1o6v_A          290 TNLELNENQLEDISP--ISNLKN----------------------------------------------LTYLTLYFNNI  321 (466)
T ss_dssp             SEEECCSSCCSCCGG--GGGCTT----------------------------------------------CSEEECCSSCC
T ss_pred             CeEEcCCCcccCchh--hcCCCC----------------------------------------------CCEEECcCCcC
Confidence            888888888875433  444433                                              47888999988


Q ss_pred             cccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCccccc
Q 042359          805 SGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGK  879 (979)
Q Consensus       805 ~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~  879 (979)
                      ++..|  ++.+++|+.|++++|++++.  ..++.+++|+.|++++|++++.+|  +..+++|+.|++++|++++.
T Consensus       322 ~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          322 SDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             SCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred             CCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence            87766  77889999999999999864  468888999999999999988877  78889999999999999873

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.1e-32  Score=318.89  Aligned_cols=349  Identities=25%  Similarity=0.350  Sum_probs=270.4

Q ss_pred             CCCCCCEEEcCCCcCccccChhhhcCCCCCcEEEccCCcccccccCCCCCcccccEEecccccCCCCCChhhhCCCCccE
Q 042359          429 QLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQF  508 (979)
Q Consensus       429 ~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~  508 (979)
                      .+++++.|++.++.+. .++  .+..+++|+.|++++|.+..                         ++. +..+++|++
T Consensus        44 ~l~~l~~L~l~~~~i~-~l~--~~~~l~~L~~L~Ls~n~l~~-------------------------~~~-~~~l~~L~~   94 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIK-SID--GVEYLNNLTQINFSNNQLTD-------------------------ITP-LKNLTKLVD   94 (466)
T ss_dssp             HHHTCCEEECCSSCCC-CCT--TGGGCTTCCEEECCSSCCCC-------------------------CGG-GTTCTTCCE
T ss_pred             HhccccEEecCCCCCc-cCc--chhhhcCCCEEECCCCccCC-------------------------chh-hhccccCCE
Confidence            3567777888777775 344  25566666666666665542                         222 566677777


Q ss_pred             EEccCCCCCCCCchHHHhcCCCccEEEcccCcCCCCCCCcccccCCcEEEeecccCCCCCCccCCCCcEEEccccccccc
Q 042359          509 LYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGS  588 (979)
Q Consensus       509 L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~  588 (979)
                      |++++|.+.+..+   +..+++|++|++++|.+.+..+ +..                     +++|++|++++|.+.+.
T Consensus        95 L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~-~~~---------------------l~~L~~L~l~~n~l~~~  149 (466)
T 1o6v_A           95 ILMNNNQIADITP---LANLTNLTGLTLFNNQITDIDP-LKN---------------------LTNLNRLELSSNTISDI  149 (466)
T ss_dssp             EECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCGG-GTT---------------------CTTCSEEEEEEEEECCC
T ss_pred             EECCCCccccChh---hcCCCCCCEEECCCCCCCCChH-HcC---------------------CCCCCEEECCCCccCCC
Confidence            7777777776655   4566777777777777665432 333                     35666666666666542


Q ss_pred             CChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCcccccccccc
Q 042359          589 ISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVS  668 (979)
Q Consensus       589 ~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~  668 (979)
                       +     .+..+++|+.|+++ |.+.+..  .+..+++|++|++++|.+++ ++ .+..+++|++|++++|.+++..|  
T Consensus       150 -~-----~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--  216 (466)
T 1o6v_A          150 -S-----ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESLIATNNQISDITP--  216 (466)
T ss_dssp             -G-----GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEEECCSSCCCCCGG--
T ss_pred             -h-----hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCC-Ch-hhccCCCCCEEEecCCccccccc--
Confidence             2     24568999999997 5555433  38899999999999999984 33 58899999999999999997666  


Q ss_pred             ccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccC
Q 042359          669 LKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGM  748 (979)
Q Consensus       669 l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l  748 (979)
                      +..+++|+.|++++|++.+ ++ .+. .+++|+.|++++|.+++..|  +..+++|+.|++++|++++..|  +..++. 
T Consensus       217 ~~~l~~L~~L~l~~n~l~~-~~-~l~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~-  288 (466)
T 1o6v_A          217 LGILTNLDELSLNGNQLKD-IG-TLA-SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTA-  288 (466)
T ss_dssp             GGGCTTCCEEECCSSCCCC-CG-GGG-GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTT-
T ss_pred             ccccCCCCEEECCCCCccc-ch-hhh-cCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCc-
Confidence            7789999999999999984 44 344 68999999999999997655  8899999999999999986443  444444 


Q ss_pred             cccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcc
Q 042359          749 VTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSF  828 (979)
Q Consensus       749 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l  828 (979)
                                                                   |+.|++++|++++..|  ++.+++|+.|+|++|++
T Consensus       289 ---------------------------------------------L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l  321 (466)
T 1o6v_A          289 ---------------------------------------------LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNI  321 (466)
T ss_dssp             ---------------------------------------------CSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCC
T ss_pred             ---------------------------------------------cCeEEcCCCcccCchh--hcCCCCCCEEECcCCcC
Confidence                                                         4899999999997655  88999999999999999


Q ss_pred             eeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCcccccCCCCccCCCccccccCCCCCCCCCC
Q 042359          829 TGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDLCGAPL  904 (979)
Q Consensus       829 ~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n~lcg~~~  904 (979)
                      ++..|  ++.+++|+.|++++|++++.  ..+..+++|+.|++++|+++|.+| ...+..+....+.+|.+.+.|.
T Consensus       322 ~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~~p~  392 (466)
T 1o6v_A          322 SDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTNAPV  392 (466)
T ss_dssp             SCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEECCCB
T ss_pred             CCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccCCch
Confidence            98776  78999999999999999975  478999999999999999999888 5566777777788887766553

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=3.4e-33  Score=324.75  Aligned_cols=301  Identities=21%  Similarity=0.177  Sum_probs=225.9

Q ss_pred             CccEEEcccCcCCCCCC-CcccccCCcEEEeecccCCCCCCcc---CCCCcEEEcccccccccCChhhhhcccCCCcccE
Q 042359          530 QLKFLDLGQNQIHGPIP-NLTEFTGLLILSVYSNNMSGPLPLI---SSNLVFLDLSNNLFSGSISPFLCYRINETKSLNA  605 (979)
Q Consensus       530 ~L~~L~Ls~n~l~~~~~-~l~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~  605 (979)
                      .+++|++++|.+++..+ .+..+++|+.|++++|.+.+..|..   +++|++|++++|.+++..+..    +..+++|++
T Consensus        33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~  108 (477)
T 2id5_A           33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGV----FTGLSNLTK  108 (477)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTS----STTCTTCCE
T ss_pred             CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCccc----ccCCCCCCE
Confidence            45555555555554433 3444445555555555444433322   356666777776666443332    344778888


Q ss_pred             EeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcc
Q 042359          606 LQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEF  685 (979)
Q Consensus       606 L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l  685 (979)
                      |++++|++.+..|..+..+++|++|++++|.+++..|..|..+++|++|++++|++++..+..+.++++|+.|++++|.+
T Consensus       109 L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i  188 (477)
T 2id5_A          109 LDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI  188 (477)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCC
T ss_pred             EECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcC
Confidence            88888888877777788888888888888888877777888888888888888888876667788888888888888888


Q ss_pred             cccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCC
Q 042359          686 VGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLP  765 (979)
Q Consensus       686 ~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~  765 (979)
                      .+..+..+. .+++|+.|++++|.+.+.+|.......+|+.|++++|++++..+..+.+++.|                 
T Consensus       189 ~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L-----------------  250 (477)
T 2id5_A          189 NAIRDYSFK-RLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL-----------------  250 (477)
T ss_dssp             CEECTTCSC-SCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC-----------------
T ss_pred             cEeChhhcc-cCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcccc-----------------
Confidence            765554444 67888888888888777777777667788888888888874333445555444                 


Q ss_pred             cccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEE
Q 042359          766 IDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESI  845 (979)
Q Consensus       766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L  845 (979)
                                                   +.|||++|++++..+..+.++++|+.|+|++|++++..|..|..+++|+.|
T Consensus       251 -----------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  301 (477)
T 2id5_A          251 -----------------------------RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVL  301 (477)
T ss_dssp             -----------------------------CEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEE
T ss_pred             -----------------------------CeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEE
Confidence                                         889999999998888889999999999999999999999999999999999


Q ss_pred             ECcCCcccccCCCCCCCCCCCCEEEccCCcccccCC
Q 042359          846 DFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIP  881 (979)
Q Consensus       846 dLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip  881 (979)
                      ||++|++++..+..|..+++|++|++++|++.+..+
T Consensus       302 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~  337 (477)
T 2id5_A          302 NVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR  337 (477)
T ss_dssp             ECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred             ECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence            999999998777888999999999999999987644

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2e-31  Score=309.88  Aligned_cols=310  Identities=22%  Similarity=0.234  Sum_probs=232.5

Q ss_pred             cccccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccc
Q 042359          114 KINPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWL  193 (979)
Q Consensus       114 ~~~~~l~~l~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l  193 (979)
                      .+|..+.  +++++|+|++|.++++ .|..|..+++|++|+|++|.+++..|..|+++++|++|+|++|.+..++..   
T Consensus        25 ~ip~~~~--~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---   98 (477)
T 2id5_A           25 AVPEGIP--TETRLLDLGKNRIKTL-NQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLG---   98 (477)
T ss_dssp             SCCSCCC--TTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTT---
T ss_pred             cCCCCCC--CCCcEEECCCCccceE-CHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcc---
Confidence            3454443  5889999999999986 577899999999999999999988889999999999999999987766532   


Q ss_pred             cCCCCCCEEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCC
Q 042359          194 SGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIP  273 (979)
Q Consensus       194 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p  273 (979)
                                              .+..+++|++|++++|++.+..+..+..+++|++|++++|.++         +..|
T Consensus        99 ------------------------~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~---------~~~~  145 (477)
T 2id5_A           99 ------------------------VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV---------YISH  145 (477)
T ss_dssp             ------------------------SSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCC---------EECT
T ss_pred             ------------------------cccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccc---------eeCh
Confidence                                    2345556666666666666666666777777777777777776         3345


Q ss_pred             ccccCCCCCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCcccccCC
Q 042359          274 RGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASL  353 (979)
Q Consensus       274 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~~l  353 (979)
                      ..+..+++|++|++++|.+++..+..+.++++|++|++++|.+.+ +++..+..+++|++|++++| ...+.++......
T Consensus       146 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~  223 (477)
T 2id5_A          146 RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA-IRDYSFKRLYRLKVLEISHW-PYLDTMTPNCLYG  223 (477)
T ss_dssp             TSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE-ECTTCSCSCTTCCEEEEECC-TTCCEECTTTTTT
T ss_pred             hhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE-eChhhcccCcccceeeCCCC-ccccccCcccccC
Confidence            566777777777777777776666667777777777777777764 33566777777777777777 5555555555555


Q ss_pred             CCCCeeeccCccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCCCCcEEeccCCcCcccCcccccCCCCC
Q 042359          354 CNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTL  433 (979)
Q Consensus       354 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  433 (979)
                      .+|++|++++|.+....+.    .+..++. |+.|++++|.+++..+..+..+++|++|++++|++++..|..|..+++|
T Consensus       224 ~~L~~L~l~~n~l~~~~~~----~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  298 (477)
T 2id5_A          224 LNLTSLSITHCNLTAVPYL----AVRHLVY-LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYL  298 (477)
T ss_dssp             CCCSEEEEESSCCCSCCHH----HHTTCTT-CCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTC
T ss_pred             ccccEEECcCCcccccCHH----HhcCccc-cCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccC
Confidence            6777788877777654333    3344444 8888888888877777778888888888888888888888888888888


Q ss_pred             CEEEcCCCcCccccChhhhcCCCCCcEEEccCCcccc
Q 042359          434 RVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTL  470 (979)
Q Consensus       434 ~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~  470 (979)
                      ++|++++|+++ .++...|..+++|+.|++++|++.+
T Consensus       299 ~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~c  334 (477)
T 2id5_A          299 RVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLAC  334 (477)
T ss_dssp             CEEECCSSCCS-CCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred             CEEECCCCcCc-eeCHhHcCCCcccCEEEccCCCccC
Confidence            88888888887 5666678888888888888888764

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=5.7e-31  Score=297.31  Aligned_cols=236  Identities=21%  Similarity=0.251  Sum_probs=156.5

Q ss_pred             CCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEe
Q 042359          600 TKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLD  679 (979)
Q Consensus       600 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  679 (979)
                      +++|++|++++|.+.+..|..+..+++|++|++++|++++.   .+..+++|+.|++++|.+++     +...++|+.|+
T Consensus       140 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~  211 (390)
T 3o6n_A          140 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELD  211 (390)
T ss_dssp             CTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEE
T ss_pred             CCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-----cCCCCcceEEE
Confidence            34444444444444444444555555566666666655532   13445566666666666553     22334566666


Q ss_pred             ccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCccccccccccc
Q 042359          680 VGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQ  759 (979)
Q Consensus       680 L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~  759 (979)
                      +++|.+.. +|..   ..++|+.|++++|.+++.  ..+..+++|+.|++++|.+.+..|..+..++.|           
T Consensus       212 l~~n~l~~-~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-----------  274 (390)
T 3o6n_A          212 ASHNSINV-VRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL-----------  274 (390)
T ss_dssp             CCSSCCCE-EECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC-----------
T ss_pred             CCCCeeee-cccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccC-----------
Confidence            66666653 3332   235677777777777653  456777888888888888887777777666655           


Q ss_pred             ccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCcc
Q 042359          760 QYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVM  839 (979)
Q Consensus       760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l  839 (979)
                                                         +.|+|++|++++ +|..+..+++|+.|+|++|+++ .+|..++.+
T Consensus       275 -----------------------------------~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l  317 (390)
T 3o6n_A          275 -----------------------------------ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQF  317 (390)
T ss_dssp             -----------------------------------CEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHH
T ss_pred             -----------------------------------CEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCcccccc
Confidence                                               788888888884 6777788899999999999998 677778889


Q ss_pred             CCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCcccccCCCCccCCCccccccCCC-CCCC
Q 042359          840 RSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGN-DLCG  901 (979)
Q Consensus       840 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~lcg  901 (979)
                      ++|+.|+|++|+++.. |  +..+++|++|++++|++++.... ..++.+....+.++ ..|+
T Consensus       318 ~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~  376 (390)
T 3o6n_A          318 DRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCK  376 (390)
T ss_dssp             TTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCC
T ss_pred             CcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH-HHHHHHHhhcccccCceec
Confidence            9999999999999854 3  67888999999999999874221 12333333344444 4454

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=1.9e-30  Score=293.06  Aligned_cols=290  Identities=21%  Similarity=0.224  Sum_probs=155.3

Q ss_pred             cCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccccCCCCC
Q 042359          120 LDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFL  199 (979)
Q Consensus       120 ~~l~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L  199 (979)
                      ..++++++|++++|.++.+ -+..+..+++|++|++++|.+++..|..|+++++|++|++++|.+..++.. .+.++++|
T Consensus        42 ~~l~~l~~l~l~~~~l~~l-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L  119 (390)
T 3o6n_A           42 ITLNNQKIVTFKNSTMRKL-PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH-VFQNVPLL  119 (390)
T ss_dssp             GGGCCCSEEEEESCEESEE-CTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTC
T ss_pred             cccCCceEEEecCCchhhC-ChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHH-HhcCCCCC
Confidence            4578999999999998864 234578899999999999999977777899999999999999987766432 13445555


Q ss_pred             CEEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCccccCC
Q 042359          200 EHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNL  279 (979)
Q Consensus       200 ~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l  279 (979)
                      ++|++++|.+.                          .++...+..+++|++|++++|.++         +..|..+..+
T Consensus       120 ~~L~L~~n~l~--------------------------~l~~~~~~~l~~L~~L~L~~n~l~---------~~~~~~~~~l  164 (390)
T 3o6n_A          120 TVLVLERNDLS--------------------------SLPRGIFHNTPKLTTLSMSNNNLE---------RIEDDTFQAT  164 (390)
T ss_dssp             CEEECCSSCCC--------------------------CCCTTTTTTCTTCCEEECCSSCCC---------BCCTTTTSSC
T ss_pred             CEEECCCCccC--------------------------cCCHHHhcCCCCCcEEECCCCccC---------ccChhhccCC
Confidence            55555555444                          333333444444444444444443         2223334444


Q ss_pred             CCCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCcccccCCCCCCee
Q 042359          280 TSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSL  359 (979)
Q Consensus       280 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~~l~~L~~L  359 (979)
                      ++|++|++++|.+++.   .+..+++|++|++++|.+++      +...++|++|++++| .+... |.  ...++|+.|
T Consensus       165 ~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~------~~~~~~L~~L~l~~n-~l~~~-~~--~~~~~L~~L  231 (390)
T 3o6n_A          165 TSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST------LAIPIAVEELDASHN-SINVV-RG--PVNVELTIL  231 (390)
T ss_dssp             TTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE------EECCSSCSEEECCSS-CCCEE-EC--CCCSSCCEE
T ss_pred             CCCCEEECCCCcCCcc---ccccccccceeecccccccc------cCCCCcceEEECCCC-eeeec-cc--cccccccEE
Confidence            4444444444444332   12334444444444444331      112234444444444 33322 11  112344444


Q ss_pred             eccCccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCCCCcEEeccCCcCcccCcccccCCCCCCEEEcC
Q 042359          360 NLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRIN  439 (979)
Q Consensus       360 ~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~  439 (979)
                      ++++|.+.+.  .    .+..++. |++|++++|.+++..|..+..+++|++|++++|++++. |..+..+++|++|+++
T Consensus       232 ~l~~n~l~~~--~----~l~~l~~-L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~  303 (390)
T 3o6n_A          232 KLQHNNLTDT--A----WLLNYPG-LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLS  303 (390)
T ss_dssp             ECCSSCCCCC--G----GGGGCTT-CSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEECC
T ss_pred             ECCCCCCccc--H----HHcCCCC-ccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-CcccCCCCCCCEEECC
Confidence            4444444332  1    2222222 55555555555544455555555555555555555532 3334455555555555


Q ss_pred             CCcCccccChhhhcCCCCCcEEEccCCccc
Q 042359          440 DNKLNGTLSAIHFANLTKLSWFRVDGNKLT  469 (979)
Q Consensus       440 ~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~  469 (979)
                      +|++. .++. .+..+++|+.|++++|.++
T Consensus       304 ~n~l~-~~~~-~~~~l~~L~~L~L~~N~i~  331 (390)
T 3o6n_A          304 HNHLL-HVER-NQPQFDRLENLYLDHNSIV  331 (390)
T ss_dssp             SSCCC-CCGG-GHHHHTTCSEEECCSSCCC
T ss_pred             CCcce-ecCc-cccccCcCCEEECCCCccc
Confidence            55554 3332 2444555555555555443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=9.7e-31  Score=311.81  Aligned_cols=238  Identities=21%  Similarity=0.252  Sum_probs=174.9

Q ss_pred             CCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEe
Q 042359          600 TKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLD  679 (979)
Q Consensus       600 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  679 (979)
                      +++|+.|++++|.+.+..|..+..+++|++|++++|.+++. +  +..+++|+.|++++|.+++     +...++|+.|+
T Consensus       146 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~  217 (597)
T 3oja_B          146 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNLLST-----LAIPIAVEELD  217 (597)
T ss_dssp             CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C--GGGCTTCSEEECCSSCCSE-----EECCTTCSEEE
T ss_pred             CCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C--hhhhhhhhhhhcccCcccc-----ccCCchhheee
Confidence            45555556666666555555666666677777777766643 2  3455667777777776664     23445677777


Q ss_pred             ccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCccccccccccc
Q 042359          680 VGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQ  759 (979)
Q Consensus       680 L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~  759 (979)
                      +++|.+.. +|..+   .++|+.|++++|.+++  +..+..+++|+.|++++|.+.+.+|..+++++.|           
T Consensus       218 ls~n~l~~-~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-----------  280 (597)
T 3oja_B          218 ASHNSINV-VRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL-----------  280 (597)
T ss_dssp             CCSSCCCE-EECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC-----------
T ss_pred             ccCCcccc-ccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCC-----------
Confidence            77777763 33322   3577888888888876  3667888889999999999988888888776666           


Q ss_pred             ccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCcc
Q 042359          760 QYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVM  839 (979)
Q Consensus       760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l  839 (979)
                                                         +.|+|++|++++ +|..++.+++|+.|+|++|.++ .+|..++.+
T Consensus       281 -----------------------------------~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l  323 (597)
T 3oja_B          281 -----------------------------------ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQF  323 (597)
T ss_dssp             -----------------------------------CEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHH
T ss_pred             -----------------------------------CEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccC
Confidence                                               788999999985 6777888999999999999999 788889999


Q ss_pred             CCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCcccccCCCCccCCCccccccCCC-CCCCCC
Q 042359          840 RSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGN-DLCGAP  903 (979)
Q Consensus       840 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~lcg~~  903 (979)
                      ++|+.|||++|++++. |  +..+++|++|++++|+++|..+. ..+..+....+.++ ..|+.+
T Consensus       324 ~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~  384 (597)
T 3oja_B          324 DRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID  384 (597)
T ss_dssp             TTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCTT
T ss_pred             CCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCcc
Confidence            9999999999999864 3  67788999999999999986432 23455555566677 778754

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=1.3e-29  Score=281.52  Aligned_cols=308  Identities=22%  Similarity=0.301  Sum_probs=232.1

Q ss_pred             cccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccccCCC
Q 042359          118 SLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLS  197 (979)
Q Consensus       118 ~l~~l~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~  197 (979)
                      .+..+++|++|+++++.+..  +|. ++.+++|++|++++|.+++. |. +.++++|++|++++|.+..++   .+.+++
T Consensus        39 ~~~~l~~L~~L~l~~~~i~~--~~~-~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~~~---~~~~l~  110 (347)
T 4fmz_A           39 TQEELESITKLVVAGEKVAS--IQG-IEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITDIS---ALQNLT  110 (347)
T ss_dssp             CHHHHTTCSEEECCSSCCCC--CTT-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCG---GGTTCT
T ss_pred             cchhcccccEEEEeCCcccc--chh-hhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccCch---HHcCCC
Confidence            34578889999999998886  343 78889999999999988854 33 888999999999999887764   377888


Q ss_pred             CCCEEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCcccc
Q 042359          198 FLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQ  277 (979)
Q Consensus       198 ~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~  277 (979)
                      +|++|++++|.+.+...    +..+++|++|++++|......+ .+..+++|++|++++|.+..          ++. +.
T Consensus       111 ~L~~L~l~~n~i~~~~~----~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~----------~~~-~~  174 (347)
T 4fmz_A          111 NLRELYLNEDNISDISP----LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKD----------VTP-IA  174 (347)
T ss_dssp             TCSEEECTTSCCCCCGG----GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCC----------CGG-GG
T ss_pred             cCCEEECcCCcccCchh----hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCC----------chh-hc
Confidence            88899998888887543    6788888888888886554443 37888888888888888763          222 67


Q ss_pred             CCCCCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCcccccCCCCCC
Q 042359          278 NLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLK  357 (979)
Q Consensus       278 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~~l~~L~  357 (979)
                      .+++|++|++++|.+.+..+  +..+++|++|++++|.+.+..   .+..+++|++|++++| .+.+..+  +..+++|+
T Consensus       175 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~---~~~~~~~L~~L~l~~n-~l~~~~~--~~~l~~L~  246 (347)
T 4fmz_A          175 NLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDIT---PVANMTRLNSLKIGNN-KITDLSP--LANLSQLT  246 (347)
T ss_dssp             GCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCG---GGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCC
T ss_pred             cCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCc---hhhcCCcCCEEEccCC-ccCCCcc--hhcCCCCC
Confidence            78888888888888875433  778888888888888887432   2778888888888888 6765444  77888888


Q ss_pred             eeeccCccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCCCCcEEeccCCcCcccCcccccCCCCCCEEE
Q 042359          358 SLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLR  437 (979)
Q Consensus       358 ~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  437 (979)
                      +|++++|.+.+. +     .+..++. |++|++++|.+++.  ..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus       247 ~L~l~~n~l~~~-~-----~~~~l~~-L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  317 (347)
T 4fmz_A          247 WLEIGTNQISDI-N-----AVKDLTK-LKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF  317 (347)
T ss_dssp             EEECCSSCCCCC-G-----GGTTCTT-CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEE
T ss_pred             EEECCCCccCCC-h-----hHhcCCC-cCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEE
Confidence            888888877653 2     2334444 88888888877764  3577778888888888888877777778888888888


Q ss_pred             cCCCcCccccChhhhcCCCCCcEEEccCCccc
Q 042359          438 INDNKLNGTLSAIHFANLTKLSWFRVDGNKLT  469 (979)
Q Consensus       438 L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~  469 (979)
                      +++|++++..+   +..+++|+.|++++|.++
T Consensus       318 L~~n~l~~~~~---~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          318 LSQNHITDIRP---LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CCSSSCCCCGG---GGGCTTCSEESSSCC---
T ss_pred             ccCCccccccC---hhhhhccceeehhhhccc
Confidence            88888774433   667778888888777664

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=3.3e-30  Score=307.18  Aligned_cols=243  Identities=22%  Similarity=0.233  Sum_probs=149.4

Q ss_pred             CCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccccCCCCCC
Q 042359          121 DLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLE  200 (979)
Q Consensus       121 ~l~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~  200 (979)
                      .+.+++.|++++|.+..+ .+..++.+++|++|+|++|.+++..|..|+.+++|++|+|++|.+..++.           
T Consensus        49 ~l~~l~~l~l~~~~l~~l-p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----------  116 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKL-PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP-----------  116 (597)
T ss_dssp             GGCCCSEEEESSCEESEE-CTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT-----------
T ss_pred             cCCCceEEEeeCCCCCCc-CHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCH-----------
Confidence            467899999999988874 24567889999999999999988777788888888888888887655442           


Q ss_pred             EEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCccccCCC
Q 042359          201 HLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLT  280 (979)
Q Consensus       201 ~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l~  280 (979)
                                      ..+..+++|++|++++|.++++++..++.+++|++|++++|.++         +..|..++.++
T Consensus       117 ----------------~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~---------~~~~~~~~~l~  171 (597)
T 3oja_B          117 ----------------HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE---------RIEDDTFQATT  171 (597)
T ss_dssp             ----------------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---------BCCTTTTTTCT
T ss_pred             ----------------HHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCC---------CCChhhhhcCC
Confidence                            12345556666666666666666555666667777777776665         33455566666


Q ss_pred             CCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCcccccCCCCCCeee
Q 042359          281 SLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLN  360 (979)
Q Consensus       281 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~~l~~L~~L~  360 (979)
                      +|++|++++|.+++..   +..+++|++|++++|.+++      +...++|+.|++++| .+....+..   .++     
T Consensus       172 ~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~------l~~~~~L~~L~ls~n-~l~~~~~~~---~~~-----  233 (597)
T 3oja_B          172 SLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST------LAIPIAVEELDASHN-SINVVRGPV---NVE-----  233 (597)
T ss_dssp             TCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE------EECCTTCSEEECCSS-CCCEEECSC---CSC-----
T ss_pred             cCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc------ccCCchhheeeccCC-ccccccccc---CCC-----
Confidence            6666666666665431   3445666666666665542      122345555555555 333221111   123     


Q ss_pred             ccCccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCCCCcEEeccCCcCcccCcccccCCCCCCEEEcCC
Q 042359          361 LRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRIND  440 (979)
Q Consensus       361 L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~  440 (979)
                                              |+.|++++|.+++.  ..+..+++|+.|++++|.+.+..|..|..+++|++|+|++
T Consensus       234 ------------------------L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  287 (597)
T 3oja_B          234 ------------------------LTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN  287 (597)
T ss_dssp             ------------------------CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTT
T ss_pred             ------------------------CCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCC
Confidence                                    44455555544432  3445555555555555555555555555555555555555


Q ss_pred             CcCc
Q 042359          441 NKLN  444 (979)
Q Consensus       441 n~l~  444 (979)
                      |++.
T Consensus       288 N~l~  291 (597)
T 3oja_B          288 NRLV  291 (597)
T ss_dssp             SCCC
T ss_pred             CCCC
Confidence            5554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=5.7e-30  Score=284.46  Aligned_cols=302  Identities=24%  Similarity=0.329  Sum_probs=190.2

Q ss_pred             CCccEEEccCCCCCCCCchHHHhcCCCccEEEcccCcCCCCCCCcccccCCcEEEeecccCCCCCC-ccCCCCcEEEccc
Q 042359          504 KHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLP-LISSNLVFLDLSN  582 (979)
Q Consensus       504 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~Ls~  582 (979)
                      ++|++|++++|.+.....   +..+++|++|++++|.+++..+ +..+++|+.|++++|.++.... ..+++|++|++++
T Consensus        44 ~~L~~L~l~~~~i~~~~~---~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~  119 (347)
T 4fmz_A           44 ESITKLVVAGEKVASIQG---IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNE  119 (347)
T ss_dssp             TTCSEEECCSSCCCCCTT---GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTT
T ss_pred             ccccEEEEeCCccccchh---hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcC
Confidence            344444444444433211   2234444444444444443222 3344444444444444333210 1145666666666


Q ss_pred             ccccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCcccc
Q 042359          583 NLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLS  662 (979)
Q Consensus       583 n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~  662 (979)
                      |.+.+..+      +..+++|+.|++++|.....++ .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.
T Consensus       120 n~i~~~~~------~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~  190 (347)
T 4fmz_A          120 DNISDISP------LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE  190 (347)
T ss_dssp             SCCCCCGG------GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC
T ss_pred             CcccCchh------hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc
Confidence            66654322      3456777777777776554443 36777788888888887764333  667778888888888777


Q ss_pred             ccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcch
Q 042359          663 GNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCI  742 (979)
Q Consensus       663 ~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~  742 (979)
                      +..+  +..+++|+.|++++|.+.+..+  +. .+++|+.|++++|++++..+  +..+++|+.|++++|++++.  ..+
T Consensus       191 ~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~-~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~  261 (347)
T 4fmz_A          191 DISP--LASLTSLHYFTAYVNQITDITP--VA-NMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAV  261 (347)
T ss_dssp             CCGG--GGGCTTCCEEECCSSCCCCCGG--GG-GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGG
T ss_pred             cccc--ccCCCccceeecccCCCCCCch--hh-cCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhH
Confidence            5333  6777888888888887764333  33 57788888888887775433  77778888888888877642  223


Q ss_pred             hhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEe
Q 042359          743 NNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLN  822 (979)
Q Consensus       743 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~  822 (979)
                      ..++                                              .|+.|++++|++++.  ..+..+++|+.|+
T Consensus       262 ~~l~----------------------------------------------~L~~L~l~~n~l~~~--~~~~~l~~L~~L~  293 (347)
T 4fmz_A          262 KDLT----------------------------------------------KLKMLNVGSNQISDI--SVLNNLSQLNSLF  293 (347)
T ss_dssp             TTCT----------------------------------------------TCCEEECCSSCCCCC--GGGGGCTTCSEEE
T ss_pred             hcCC----------------------------------------------CcCEEEccCCccCCC--hhhcCCCCCCEEE
Confidence            3333                                              347788888888753  3477788888888


Q ss_pred             CCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCccc
Q 042359          823 FSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLT  877 (979)
Q Consensus       823 Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~  877 (979)
                      +++|++++..|..++.+++|+.|++++|++++..|  +..+++|++||+++|+++
T Consensus       294 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          294 LNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             CcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            88888887777778888888888888888887666  777888888888888775

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.97  E-value=1.4e-30  Score=285.35  Aligned_cols=277  Identities=20%  Similarity=0.221  Sum_probs=180.5

Q ss_pred             CCCCHHHHHHHHHhhhcCC-CCCCCCCCC----CCCCCCccccceeccC--------CCCcEEEEECCCCCCCCchhhHH
Q 042359           38 VGCLGSEKEALLSFKRDLK-DPSNRLASW----SGNGDCCAWAGVFCDN--------ITGHVLHLDLRNPFNYHKESEYE  104 (979)
Q Consensus        38 ~~c~~~~~~~ll~~k~~~~-~~~~~l~~W----~~~~~~c~w~gv~c~~--------~~~~v~~L~L~~~~~~~~~~~~~  104 (979)
                      .++..+|++||++||+++. ++.+.+.+|    ....++|.|.|+.|+.        ...+|+.|+|+++          
T Consensus        22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n----------   91 (328)
T 4fcg_A           22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSV----------   91 (328)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESS----------
T ss_pred             cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCC----------
Confidence            3466789999999999984 776777889    4567899999999952        3468888998883          


Q ss_pred             HhhcccccccccccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCcc
Q 042359          105 AIRRTALVGKINPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYL  184 (979)
Q Consensus       105 ~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i  184 (979)
                           .+. .+|+.++++++|++|+|++|.++.  +|..++.+++|++|+|++|.++ .+|..++++++|++|++++|.+
T Consensus        92 -----~l~-~lp~~l~~l~~L~~L~L~~n~l~~--lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~  162 (328)
T 4fcg_A           92 -----PLP-QFPDQAFRLSHLQHMTIDAAGLME--LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPE  162 (328)
T ss_dssp             -----CCS-SCCSCGGGGTTCSEEEEESSCCCC--CCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETT
T ss_pred             -----Cch-hcChhhhhCCCCCEEECCCCCccc--hhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCC
Confidence                 454 778888889999999999999883  7888889999999999999988 7788889999999999988654


Q ss_pred             c-cCCccccccCCCCCCEEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCC
Q 042359          185 L-YVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWF  263 (979)
Q Consensus       185 ~-~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  263 (979)
                      . .++..  +..      .           .....+..+++|++|++++|+++.+ +..+..+++|++|++++|.++.  
T Consensus       163 ~~~~p~~--~~~------~-----------~~~~~~~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~N~l~~--  220 (328)
T 4fcg_A          163 LTELPEP--LAS------T-----------DASGEHQGLVNLQSLRLEWTGIRSL-PASIANLQNLKSLKIRNSPLSA--  220 (328)
T ss_dssp             CCCCCSC--SEE------E-----------C-CCCEEESTTCCEEEEEEECCCCC-CGGGGGCTTCCEEEEESSCCCC--
T ss_pred             ccccChh--Hhh------c-----------cchhhhccCCCCCEEECcCCCcCcc-hHhhcCCCCCCEEEccCCCCCc--
Confidence            3 22221  110      0           0001122344445555555544422 2335555555555555555542  


Q ss_pred             CCCcccccCCccccCCCCCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCc
Q 042359          264 IPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIE  343 (979)
Q Consensus       264 ~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~  343 (979)
                              +|..++.+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+ |..++++++|++|++++| .+.
T Consensus       221 --------l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~-p~~~~~l~~L~~L~L~~n-~~~  290 (328)
T 4fcg_A          221 --------LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTL-PLDIHRLTQLEKLDLRGC-VNL  290 (328)
T ss_dssp             --------CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBC-CTTGGGCTTCCEEECTTC-TTC
T ss_pred             --------CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhc-chhhhcCCCCCEEeCCCC-Cch
Confidence                    3444555555555555555555555555555555666666555555555 455555666666666665 555


Q ss_pred             ccCcccccCCCCCCeeeccCcc
Q 042359          344 GRIPRSMASLCNLKSLNLRGVH  365 (979)
Q Consensus       344 ~~~~~~l~~l~~L~~L~L~~n~  365 (979)
                      +.+|..+.++++|+.+++..+.
T Consensus       291 ~~iP~~l~~L~~L~~l~l~~~~  312 (328)
T 4fcg_A          291 SRLPSLIAQLPANCIILVPPHL  312 (328)
T ss_dssp             CCCCGGGGGSCTTCEEECCGGG
T ss_pred             hhccHHHhhccCceEEeCCHHH
Confidence            5566666666666666655543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=2.9e-33  Score=324.21  Aligned_cols=362  Identities=20%  Similarity=0.144  Sum_probs=182.4

Q ss_pred             CCCcEEeccCCcCcccCccc-ccCCCCCCEEEcCCCcCcccc---ChhhhcCCCCCcEEEccCCcccccccCCCCCcccc
Q 042359          407 KNIVTLDFANNSIVGLIPES-LGQLSTLRVLRINDNKLNGTL---SAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQL  482 (979)
Q Consensus       407 ~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~l---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L  482 (979)
                      ++|++|++++|+++...... +..+++|++|++++|++.+..   -...+..+++|+.|++++|.+.....         
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~---------   73 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGV---------   73 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHH---------
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHH---------
Confidence            45677777777766443322 556677777777777765321   01134455555555555555432110         


Q ss_pred             cEEecccccCCCCCChhhhCCC----CccEEEccCCCCCCCC----chHHHhcCCCccEEEcccCcCCCCCC-CcccccC
Q 042359          483 VALGLRNCYVGSRFPLWLYSQK----HLQFLYLVNSSISDIF----PIRFLKSASQLKFLDLGQNQIHGPIP-NLTEFTG  553 (979)
Q Consensus       483 ~~L~l~~~~~~~~~p~~l~~~~----~L~~L~Ls~n~l~~~~----~~~~~~~~~~L~~L~Ls~n~l~~~~~-~l~~~~~  553 (979)
                                    ......++    +|++|++++|.+.+..    +. .+..+++|++|++++|.+.+..+ .+..   
T Consensus        74 --------------~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~L~~L~Ls~n~i~~~~~~~l~~---  135 (461)
T 1z7x_W           74 --------------HCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS-TLRTLPTLQELHLSDNLLGDAGLQLLCE---  135 (461)
T ss_dssp             --------------HHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH-HTTSCTTCCEEECCSSBCHHHHHHHHHH---
T ss_pred             --------------HHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH-HHccCCceeEEECCCCcCchHHHHHHHH---
Confidence                          00111122    4555555555554321    11 12334444444444444432111 0000   


Q ss_pred             CcEEEeecccCCCCCCccCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCcccc-----CCCCCC
Q 042359          554 LLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWM-----SYQNLK  628 (979)
Q Consensus       554 L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~-----~l~~L~  628 (979)
                                   ......++|++|++++|.+++.....+...+..+++|++|++++|.+.+..+..+.     ..++|+
T Consensus       136 -------------~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~  202 (461)
T 1z7x_W          136 -------------GLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLE  202 (461)
T ss_dssp             -------------HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCC
T ss_pred             -------------HHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCce
Confidence                         00001235666666666666554444444445566666666666666543332222     234666


Q ss_pred             EEEccCCccccc----CCcccCCCCCccEEEcCCccccccc-----cccccCCCCCCEEeccCCccccc----CChhHHH
Q 042359          629 TLKLSNNKFTGN----LPYSMGSLTSLVWLHLGENRLSGNI-----LVSLKNCTALESLDVGENEFVGN----IPTWIGE  695 (979)
Q Consensus       629 ~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~-----p~~l~~l~~L~~L~L~~N~l~~~----ip~~~~~  695 (979)
                      +|++++|.+++.    ++..+..+++|++|++++|++++..     +..+..+++|++|++++|.+++.    ++..+. 
T Consensus       203 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-  281 (461)
T 1z7x_W          203 ALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR-  281 (461)
T ss_dssp             EEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH-
T ss_pred             EEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHh-
Confidence            666666666542    3445555666666666666665432     22223456666666666666543    344443 


Q ss_pred             hhhccceeeccCCcccCCCCcccc-----CCCCccEEEccCCccccc----cCcchhhcccCcccccccccccccCCCCc
Q 042359          696 RFSRMVVLILRSNKFHGPLPTGLC-----DLAFLQILDIADNNLSGA----IPNCINNLTGMVTACSFTRSVQQYLPLPI  766 (979)
Q Consensus       696 ~l~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~l~~~~~~~~~~~~~~~~~~  766 (979)
                      .+++|+.|++++|.+++..+..+.     ..++|+.|++++|.+++.    +|..+..++                    
T Consensus       282 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~--------------------  341 (461)
T 1z7x_W          282 AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR--------------------  341 (461)
T ss_dssp             HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCS--------------------
T ss_pred             hCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCC--------------------
Confidence            455666666666665543222222     124566666666665543    222222222                    


Q ss_pred             ccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccC-----CCCCCEEeCCCCccee----ccCCCCC
Q 042359          767 DVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTN-----LKALQSLNFSYNSFTG----RIPESIG  837 (979)
Q Consensus       767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~-----l~~L~~L~Ls~N~l~~----~ip~~~~  837 (979)
                                                .|+.|||++|++++..+..+..     .++|+.|+|++|++++    .+|..+.
T Consensus       342 --------------------------~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~  395 (461)
T 1z7x_W          342 --------------------------FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLL  395 (461)
T ss_dssp             --------------------------SCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH
T ss_pred             --------------------------CccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHH
Confidence                                      2356666666665544443332     4566666666666664    5566666


Q ss_pred             ccCCCCEEECcCCccccc
Q 042359          838 VMRSLESIDFSANQLSGE  855 (979)
Q Consensus       838 ~l~~L~~LdLs~N~l~~~  855 (979)
                      .+++|++|||++|++++.
T Consensus       396 ~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          396 ANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             HCCCCCEEECCSSSCCHH
T ss_pred             hCCCccEEECCCCCCCHH
Confidence            666666666666666543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=3.4e-28  Score=267.85  Aligned_cols=266  Identities=17%  Similarity=0.237  Sum_probs=206.6

Q ss_pred             CcEEEeecccCCCCCCccCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEcc
Q 042359          554 LLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLS  633 (979)
Q Consensus       554 L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls  633 (979)
                      ++.++++++.+.......++++++|++++|.+++..+..    +..+++|++|++++|.+++..|..+..+++|++|+++
T Consensus        33 l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           33 LRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGD----FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             TTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTT----TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhh----hccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            344444444444333333567888888888887655543    3458889999999998888778888888899999999


Q ss_pred             CCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccc--cCChhHHHhhhccceeeccCCccc
Q 042359          634 NNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVG--NIPTWIGERFSRMVVLILRSNKFH  711 (979)
Q Consensus       634 ~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~--~ip~~~~~~l~~L~~L~L~~n~l~  711 (979)
                      +|+++ .+|..+.  ++|++|++++|++++..+..+.++++|++|++++|.+..  ..+..+. .+++|+.|++++|.++
T Consensus       109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~L~~L~l~~n~l~  184 (330)
T 1xku_A          109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ-GMKKLSYIRIADTNIT  184 (330)
T ss_dssp             SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGG-GCTTCCEEECCSSCCC
T ss_pred             CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhcc-CCCCcCEEECCCCccc
Confidence            99888 5666554  788999999999888777788888999999999988853  4555555 6888899999988887


Q ss_pred             CCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhc
Q 042359          712 GPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDIL  791 (979)
Q Consensus       712 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  791 (979)
                      . +|..+.  ++|+.|++++|++++..|..+..++.|                                           
T Consensus       185 ~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L-------------------------------------------  218 (330)
T 1xku_A          185 T-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNL-------------------------------------------  218 (330)
T ss_dssp             S-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTC-------------------------------------------
T ss_pred             c-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCC-------------------------------------------
Confidence            4 555543  788889999998887777777766655                                           


Q ss_pred             cceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCC------CCC
Q 042359          792 NLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSS------LTF  865 (979)
Q Consensus       792 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~------l~~  865 (979)
                         +.|+|++|++++..|..++.+++|+.|+|++|+++ .+|..+..+++|++|++++|++++..+..+..      .++
T Consensus       219 ---~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~  294 (330)
T 1xku_A          219 ---AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKAS  294 (330)
T ss_dssp             ---CEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCC
T ss_pred             ---CEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCccccccccc
Confidence               78888888888877778888888999999999888 78888888888999999999888776666643      367


Q ss_pred             CCEEEccCCccc
Q 042359          866 LNHLNLSNNNLT  877 (979)
Q Consensus       866 L~~L~ls~N~l~  877 (979)
                      |+.+++++|++.
T Consensus       295 l~~l~l~~N~~~  306 (330)
T 1xku_A          295 YSGVSLFSNPVQ  306 (330)
T ss_dssp             CSEEECCSSSSC
T ss_pred             ccceEeecCccc
Confidence            888888888886

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=1.8e-28  Score=270.16  Aligned_cols=243  Identities=20%  Similarity=0.237  Sum_probs=135.3

Q ss_pred             CCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCcc
Q 042359          573 SNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLV  652 (979)
Q Consensus       573 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  652 (979)
                      ++|++|++++|.+++..|..    ++.+++|++|++++|++. .+|..+.  ++|++|++++|++++..+..|..+++|+
T Consensus        78 ~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~  150 (332)
T 2ft3_A           78 QHLYALVLVNNKISKIHEKA----FSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMN  150 (332)
T ss_dssp             TTCCEEECCSSCCCEECGGG----STTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCC
T ss_pred             CCCcEEECCCCccCccCHhH----hhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCC
Confidence            34455555555554433332    233556666666666655 3443333  5566666666666544444456666666


Q ss_pred             EEEcCCcccc--ccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEcc
Q 042359          653 WLHLGENRLS--GNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIA  730 (979)
Q Consensus       653 ~L~L~~n~l~--~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  730 (979)
                      +|++++|.++  +..+..+..+ +|++|++++|+++ .+|..+.   ++|+.|++++|++++..|..+..+++|+.|+++
T Consensus       151 ~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~  225 (332)
T 2ft3_A          151 CIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLG  225 (332)
T ss_dssp             EEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCC
T ss_pred             EEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-ccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECC
Confidence            6666666664  2445555555 6666666666665 3554432   456666666666665555566666666666666


Q ss_pred             CCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccc
Q 042359          731 DNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPL  810 (979)
Q Consensus       731 ~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~  810 (979)
                      +|++++..|..+..+++|                                              +.|+|++|+++ .+|.
T Consensus       226 ~N~l~~~~~~~~~~l~~L----------------------------------------------~~L~L~~N~l~-~lp~  258 (332)
T 2ft3_A          226 HNQIRMIENGSLSFLPTL----------------------------------------------RELHLDNNKLS-RVPA  258 (332)
T ss_dssp             SSCCCCCCTTGGGGCTTC----------------------------------------------CEEECCSSCCC-BCCT
T ss_pred             CCcCCcCChhHhhCCCCC----------------------------------------------CEEECCCCcCe-ecCh
Confidence            666655544444444433                                              56666666666 5666


Q ss_pred             cccCCCCCCEEeCCCCcceeccCCCCCcc------CCCCEEECcCCccc--ccCCCCCCCCCCCCEEEccCC
Q 042359          811 EVTNLKALQSLNFSYNSFTGRIPESIGVM------RSLESIDFSANQLS--GEIPESMSSLTFLNHLNLSNN  874 (979)
Q Consensus       811 ~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l------~~L~~LdLs~N~l~--~~ip~~l~~l~~L~~L~ls~N  874 (979)
                      .++.+++|+.|++++|++++..+..|...      .+|+.|++++|.+.  +..|..+..++.|+.+++++|
T Consensus       259 ~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          259 GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             TGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred             hhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence            66666666666666666665544444432      45666666666655  445555666666666666655

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=2.1e-31  Score=308.64  Aligned_cols=137  Identities=22%  Similarity=0.210  Sum_probs=60.6

Q ss_pred             CCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCC----CCccccCCCCCCceEecCCCccccCCccccccCCC--
Q 042359          124 HLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGG----MIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLS--  197 (979)
Q Consensus       124 ~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~----~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~--  197 (979)
                      +|++|||++|+++.......+..+++|++|++++|.+++    .++..+..+++|++|++++|.+.+.....+...++  
T Consensus         4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~   83 (461)
T 1z7x_W            4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   83 (461)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence            445555555555443222234455555555555555542    13344445555555555555543322222222222  


Q ss_pred             --CCCEEEccCccCCCCc--hhhhhcCCCCCccEEEccCCCCCCCChhhhc-----CCCCCCEEECCCCCCC
Q 042359          198 --FLEHLDLRSVNLSKAF--DWLMVTNKLPSLVELRLANCQLHHFSLLATA-----NFSSLTVLDLSDNQFD  260 (979)
Q Consensus       198 --~L~~L~l~~n~~~~~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~Ls~n~l~  260 (979)
                        +|++|++++|.+.+..  .++..+..+++|++|++++|.+++.....+.     ..++|++|++++|.++
T Consensus        84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~  155 (461)
T 1z7x_W           84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS  155 (461)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred             CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCC
Confidence              3445555444444321  2333444455555555555544433222211     1334555555555444

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=4.2e-28  Score=267.07  Aligned_cols=288  Identities=20%  Similarity=0.252  Sum_probs=227.5

Q ss_pred             CccEEEccCCCCCCCCchHHHhcCCCccEEEcccCcCCCCCC-CcccccCCcEEEeecccCCCCCCccCCCCcEEEcccc
Q 042359          505 HLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIP-NLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNN  583 (979)
Q Consensus       505 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n  583 (979)
                      +++.++++++.+..... .+   .+.+++|++++|.+++..+ .+..+                     ++|++|++++|
T Consensus        32 ~l~~l~~~~~~l~~lp~-~~---~~~l~~L~L~~n~i~~~~~~~~~~l---------------------~~L~~L~L~~n   86 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPK-DL---PPDTALLDLQNNKITEIKDGDFKNL---------------------KNLHTLILINN   86 (330)
T ss_dssp             ETTEEECTTSCCCSCCC-SC---CTTCCEEECCSSCCCCBCTTTTTTC---------------------TTCCEEECCSS
T ss_pred             CCeEEEecCCCccccCc-cC---CCCCeEEECCCCcCCEeChhhhccC---------------------CCCCEEECCCC
Confidence            56777777777665432 11   2456677777776665544 34333                     56666777777


Q ss_pred             cccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccc
Q 042359          584 LFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSG  663 (979)
Q Consensus       584 ~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~  663 (979)
                      .+++..|..+    ..+++|++|++++|+++ .+|..+.  ++|++|++++|++++..+..+..+++|++|++++|.+..
T Consensus        87 ~l~~~~~~~~----~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  159 (330)
T 1xku_A           87 KISKISPGAF----APLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS  159 (330)
T ss_dssp             CCCCBCTTTT----TTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG
T ss_pred             cCCeeCHHHh----cCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc
Confidence            6666555443    45788999999999887 5565544  789999999999997777778899999999999999864


Q ss_pred             --cccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcc
Q 042359          664 --NILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNC  741 (979)
Q Consensus       664 --~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~  741 (979)
                        ..+..+.++++|++|++++|.++ .+|..+.   ++|+.|++++|++++..|..+..+++|+.|++++|++++..|..
T Consensus       160 ~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  235 (330)
T 1xku_A          160 SGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS  235 (330)
T ss_dssp             GGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTT
T ss_pred             cCcChhhccCCCCcCEEECCCCccc-cCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhh
Confidence              67788899999999999999998 5776543   78999999999999888899999999999999999999877777


Q ss_pred             hhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEE
Q 042359          742 INNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSL  821 (979)
Q Consensus       742 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L  821 (979)
                      +..++.|                                              +.|+|++|+++ .+|..+..+++|+.|
T Consensus       236 ~~~l~~L----------------------------------------------~~L~L~~N~l~-~lp~~l~~l~~L~~L  268 (330)
T 1xku_A          236 LANTPHL----------------------------------------------RELHLNNNKLV-KVPGGLADHKYIQVV  268 (330)
T ss_dssp             GGGSTTC----------------------------------------------CEEECCSSCCS-SCCTTTTTCSSCCEE
T ss_pred             ccCCCCC----------------------------------------------CEEECCCCcCc-cCChhhccCCCcCEE
Confidence            7766655                                              89999999999 899999999999999


Q ss_pred             eCCCCcceeccCCCCCc------cCCCCEEECcCCcccc--cCCCCCCCCCCCCEEEccCCc
Q 042359          822 NFSYNSFTGRIPESIGV------MRSLESIDFSANQLSG--EIPESMSSLTFLNHLNLSNNN  875 (979)
Q Consensus       822 ~Ls~N~l~~~ip~~~~~------l~~L~~LdLs~N~l~~--~ip~~l~~l~~L~~L~ls~N~  875 (979)
                      ++++|++++..+..|..      ...|+.|++++|.+..  ..|..+..+..++.+++++|+
T Consensus       269 ~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          269 YLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             ECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             ECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            99999999777777754      3789999999999874  567889999999999999985

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=9.2e-28  Score=264.51  Aligned_cols=292  Identities=21%  Similarity=0.234  Sum_probs=201.6

Q ss_pred             CCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccccCCCCCCEE
Q 042359          123 KHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHL  202 (979)
Q Consensus       123 ~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L  202 (979)
                      .++++++++++.++.  +|..+.  ++|++|++++|.+++..|..|+++++|++|++++|.+..+... .+.++++|++|
T Consensus        33 c~l~~l~~~~~~l~~--ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L  107 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKA--VPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEK-AFSPLRKLQKL  107 (332)
T ss_dssp             EETTEEECCSSCCSS--CCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG-GSTTCTTCCEE
T ss_pred             ccCCEEECCCCCccc--cCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHh-HhhCcCCCCEE
Confidence            378999999999885  576653  7999999999999977788899999999999999998776432 36788888888


Q ss_pred             EccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCccccCCCCC
Q 042359          203 DLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSL  282 (979)
Q Consensus       203 ~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l~~L  282 (979)
                      ++++|.+...+...     .++|++|++++|+++++++..+..+++|++|++++|.++..       +..|..+..+ +|
T Consensus       108 ~L~~n~l~~l~~~~-----~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-------~~~~~~~~~l-~L  174 (332)
T 2ft3_A          108 YISKNHLVEIPPNL-----PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS-------GFEPGAFDGL-KL  174 (332)
T ss_dssp             ECCSSCCCSCCSSC-----CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG-------GSCTTSSCSC-CC
T ss_pred             ECCCCcCCccCccc-----cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccC-------CCCcccccCC-cc
Confidence            88888887654321     26788888888888887777788888888888888887632       3345556666 77


Q ss_pred             CEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCcccccCCCCCCeeecc
Q 042359          283 RHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLR  362 (979)
Q Consensus       283 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~~l~~L~~L~L~  362 (979)
                      ++|++++|.+++ +|..+.  ++|++|++++|.+++ +++..+..+++|++|++++| .+.+..+..+..+++|++|+++
T Consensus       175 ~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~  249 (332)
T 2ft3_A          175 NYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQA-IELEDLLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLD  249 (332)
T ss_dssp             SCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCC-CCTTSSTTCTTCSCCBCCSS-CCCCCCTTGGGGCTTCCEEECC
T ss_pred             CEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCc-cCHHHhcCCCCCCEEECCCC-cCCcCChhHhhCCCCCCEEECC
Confidence            888888877764 444332  567777777777763 32556667777777777777 6666555556666666666655


Q ss_pred             CccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCCCCcEEeccCCcCcccCcccccC------CCCCCEE
Q 042359          363 GVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQ------LSTLRVL  436 (979)
Q Consensus       363 ~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~------l~~L~~L  436 (979)
                      +|.+.                              .+|..+..+++|++|++++|++++..+..|..      .+.|+.|
T Consensus       250 ~N~l~------------------------------~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L  299 (332)
T 2ft3_A          250 NNKLS------------------------------RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGI  299 (332)
T ss_dssp             SSCCC------------------------------BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEE
T ss_pred             CCcCe------------------------------ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccce
Confidence            55544                              23445556666666666666666555554443      2456777


Q ss_pred             EcCCCcCcc-ccChhhhcCCCCCcEEEccCCc
Q 042359          437 RINDNKLNG-TLSAIHFANLTKLSWFRVDGNK  467 (979)
Q Consensus       437 ~L~~n~l~~-~l~~~~~~~l~~L~~L~L~~n~  467 (979)
                      ++++|++.. .++...|..+++|+.+++++|+
T Consensus       300 ~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          300 SLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             ECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             EeecCcccccccCcccccccchhhhhhccccc
Confidence            777777641 3444567777777777777663

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=3.6e-28  Score=266.26  Aligned_cols=227  Identities=19%  Similarity=0.241  Sum_probs=187.1

Q ss_pred             CCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEe
Q 042359          600 TKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLD  679 (979)
Q Consensus       600 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  679 (979)
                      .+.++.|++++|.+. .+|..+..+++|++|++++|.++ .+|..++.+++|++|++++|+++ .+|..+.++++|++|+
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            466777888888777 66777777888888888888887 77878888888888888888887 6777788888888888


Q ss_pred             ccCCcccccCChhHHH--------hhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCccc
Q 042359          680 VGENEFVGNIPTWIGE--------RFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTA  751 (979)
Q Consensus       680 L~~N~l~~~ip~~~~~--------~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~  751 (979)
                      +++|++.+.+|..+..        .+++|+.|++++|+++ .+|..+..+++|+.|++++|++++ +|..++.++.|   
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L---  231 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKL---  231 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTC---
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCC---
Confidence            8888887788876541        3788888888888888 778888888888999999888874 66666666555   


Q ss_pred             ccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceec
Q 042359          752 CSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGR  831 (979)
Q Consensus       752 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~  831 (979)
                                                                 +.|+|++|++.+.+|..++.+++|+.|+|++|++.+.
T Consensus       232 -------------------------------------------~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~  268 (328)
T 4fcg_A          232 -------------------------------------------EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT  268 (328)
T ss_dssp             -------------------------------------------CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCB
T ss_pred             -------------------------------------------CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhh
Confidence                                                       7888999888888998899999999999999988889


Q ss_pred             cCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCccc
Q 042359          832 IPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLT  877 (979)
Q Consensus       832 ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~  877 (979)
                      +|..++++++|+.|||++|++.+.+|+.++++++|+.+++..|.+.
T Consensus       269 ~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          269 LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             CCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             cchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            9988999999999999999999999999999999999988876554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=5.5e-30  Score=306.73  Aligned_cols=427  Identities=14%  Similarity=0.047  Sum_probs=290.1

Q ss_pred             ccccccCCCCCCEEeCCCCCCC---CCCccccc------------cCCCCCCEEEcCCCCCCCCCccccCCC--CCCceE
Q 042359          115 INPSLLDLKHLSYLDLSFNDFQ---GIQIPRFF------------GSMGNLRYLNLSRTRIGGMIPHHLGNL--SNLQFL  177 (979)
Q Consensus       115 ~~~~l~~l~~L~~L~Ls~n~i~---~~~lp~~~------------~~l~~L~~L~Ls~n~i~~~~p~~~~~L--~~L~~L  177 (979)
                      ++..+.++++|++|+|+++...   +. +|..+            ..+++|++|+|++|.+++..+..++..  .+|++|
T Consensus        65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L  143 (592)
T 3ogk_B           65 PDRLSRRFPNLRSLKLKGKPRAAMFNL-IPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETL  143 (592)
T ss_dssp             HHHHHHHCTTCSEEEEECSCGGGGGTC-SCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred             hHHHHHhCCCCeEEEecCCcchhhccc-ccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence            3445667888999999875321   11 22222            278999999999998876666666653  349999


Q ss_pred             ecCCCccccC-CccccccCCCCCCEEEccCccCCCCc-h-hhhhcCCCCCccEEEccCCCCCCCCh----hhhcCCCCCC
Q 042359          178 DLSSNYLLYV-DNFWWLSGLSFLEHLDLRSVNLSKAF-D-WLMVTNKLPSLVELRLANCQLHHFSL----LATANFSSLT  250 (979)
Q Consensus       178 ~Ls~n~i~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~-~-~~~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~  250 (979)
                      ++++|..... .......++++|++|++++|.+.+.. . +......+++|++|++++|.+++...    ..+..+++|+
T Consensus       144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~  223 (592)
T 3ogk_B          144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV  223 (592)
T ss_dssp             EEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCC
T ss_pred             ECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCc
Confidence            9998872221 11122457899999999999876542 1 33345678999999999999885543    3456789999


Q ss_pred             EEECCCCCCCCCCCCCcccccCCccccCCCCCCEEeccCCcCc---ccCchhhccCCCCCEEeccCCcCccccCcccccc
Q 042359          251 VLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFN---SSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGN  327 (979)
Q Consensus       251 ~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~---~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~  327 (979)
                      +|++++|.+..          +|..+..+++|++|+++.....   ...+..+..+++|+.|+++++... .+ +..+..
T Consensus       224 ~L~L~~~~~~~----------l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l-~~~~~~  291 (592)
T 3ogk_B          224 SVKVGDFEILE----------LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EM-PILFPF  291 (592)
T ss_dssp             EEECSSCBGGG----------GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TG-GGGGGG
T ss_pred             EEeccCccHHH----------HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HH-HHHHhh
Confidence            99999988752          6677888899999999864332   233455677889999999886433 45 667788


Q ss_pred             cCccCEEecCCCCCCcccCc-ccccCCCCCCeeeccCccCCcccchhhhhccccccCCCcEEECcC-----------CcC
Q 042359          328 LTSISWLDLSLNMGIEGRIP-RSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRS-----------DSI  395 (979)
Q Consensus       328 l~~L~~L~L~~n~~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~-----------n~l  395 (979)
                      +++|++|++++| .+.+... ..+..+++|++|+++++...+.++.    ....++. |++|++++           +.+
T Consensus       292 ~~~L~~L~Ls~~-~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~----~~~~~~~-L~~L~L~~g~~~~~~~~~~~~~  365 (592)
T 3ogk_B          292 AAQIRKLDLLYA-LLETEDHCTLIQKCPNLEVLETRNVIGDRGLEV----LAQYCKQ-LKRLRIERGADEQGMEDEEGLV  365 (592)
T ss_dssp             GGGCCEEEETTC-CCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHH----HHHHCTT-CCEEEEECCCCSSTTSSTTCCC
T ss_pred             cCCCcEEecCCC-cCCHHHHHHHHHhCcCCCEEeccCccCHHHHHH----HHHhCCC-CCEEEeecCccccccccccCcc
Confidence            899999999998 5655433 4467889999999984322222222    2233444 99999993           555


Q ss_pred             cccc-ccccCCCCCCcEEeccCCcCcccCcccccC-CCCCCEEEcC----CCcCccc-----cChhhhcCCCCCcEEEcc
Q 042359          396 YGHL-TDQLGQFKNIVTLDFANNSIVGLIPESLGQ-LSTLRVLRIN----DNKLNGT-----LSAIHFANLTKLSWFRVD  464 (979)
Q Consensus       396 ~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~L~----~n~l~~~-----l~~~~~~~l~~L~~L~L~  464 (979)
                      ++.. +.....+++|++|+++.|.+++..+..+.. +++|++|+++    .|.+++.     ++. .+.++++|+.|+++
T Consensus       366 ~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~-~~~~~~~L~~L~L~  444 (592)
T 3ogk_B          366 SQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS-LLIGCKKLRRFAFY  444 (592)
T ss_dssp             CHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHH-HHHHCTTCCEEEEE
T ss_pred             CHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHH-HHHhCCCCCEEEEe
Confidence            5432 223456889999999888888776666665 8899999996    5666642     222 36678899999987


Q ss_pred             CCc--ccccccCCC-CCcccccEEecccccCCC-CCChhhhCCCCccEEEccCCCCCCCCchHHHhcCCCccEEEcccCc
Q 042359          465 GNK--LTLGVKHDW-IPPFQLVALGLRNCYVGS-RFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQ  540 (979)
Q Consensus       465 ~n~--l~~~~~~~~-~~~~~L~~L~l~~~~~~~-~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~  540 (979)
                      ++.  ++......+ ...++|+.|++++|.+++ .++..+..+++|++|++++|.+++.....+...+++|++|++++|+
T Consensus       445 ~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          445 LRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             CCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred             cCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence            543  332211111 124578888888888765 3455667788888888888887666555666678888888888888


Q ss_pred             CCCCCC-Cc-ccccCCcEEEeec
Q 042359          541 IHGPIP-NL-TEFTGLLILSVYS  561 (979)
Q Consensus       541 l~~~~~-~l-~~~~~L~~L~l~~  561 (979)
                      +++.-- .+ ..++.+....+..
T Consensus       525 it~~~~~~l~~~~p~l~~~~~~~  547 (592)
T 3ogk_B          525 ASMTGQDLMQMARPYWNIELIPS  547 (592)
T ss_dssp             CCTTCTTGGGGCCTTEEEEEECC
T ss_pred             CCHHHHHHHHHhCCCcEEEEecC
Confidence            775422 22 2344554444443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=7.4e-28  Score=267.73  Aligned_cols=279  Identities=19%  Similarity=0.193  Sum_probs=223.1

Q ss_pred             ccCCcEEEeecccCCCCCCccCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEE
Q 042359          551 FTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTL  630 (979)
Q Consensus       551 ~~~L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  630 (979)
                      ++.....+.+++.++......+++|++|++++|.+++..+..    +..+++|+.|++++|++++..|..+.++++|++|
T Consensus        30 C~~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (353)
T 2z80_A           30 CDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSD----LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL  105 (353)
T ss_dssp             ECTTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTT----TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHH----hccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence            333344555666666554445678999999999988755433    3558999999999999998888889999999999


Q ss_pred             EccCCcccccCCcccCCCCCccEEEcCCcccccccc-ccccCCCCCCEEeccCCc-ccccCChhHHHhhhccceeeccCC
Q 042359          631 KLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNIL-VSLKNCTALESLDVGENE-FVGNIPTWIGERFSRMVVLILRSN  708 (979)
Q Consensus       631 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~N~-l~~~ip~~~~~~l~~L~~L~L~~n  708 (979)
                      ++++|++++..+..+..+++|++|++++|++++..+ ..+.++++|++|++++|. +.+..|..+. .+++|+.|++++|
T Consensus       106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-~l~~L~~L~l~~n  184 (353)
T 2z80_A          106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA-GLTFLEELEIDAS  184 (353)
T ss_dssp             ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT-TCCEEEEEEEEET
T ss_pred             ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHcc-CCCCCCEEECCCC
Confidence            999999995444458899999999999999985444 478899999999999995 5544445555 7899999999999


Q ss_pred             cccCCCCccccCCCCccEEEccCCccccccCcc-hhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchh
Q 042359          709 KFHGPLPTGLCDLAFLQILDIADNNLSGAIPNC-INNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDY  787 (979)
Q Consensus       709 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  787 (979)
                      ++++..|..+..+++|+.|++++|++. .+|.. +..                                           
T Consensus       185 ~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~-------------------------------------------  220 (353)
T 2z80_A          185 DLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDV-------------------------------------------  220 (353)
T ss_dssp             TCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHH-------------------------------------------
T ss_pred             CcCccCHHHHhccccCCeecCCCCccc-cchhhhhhh-------------------------------------------
Confidence            999888999999999999999999985 34432 222                                           


Q ss_pred             hhhccceeEEecccCccccccccccc---CCCCCCEEeCCCCccee----ccCCCCCccCCCCEEECcCCcccccCCCC-
Q 042359          788 EDILNLVRMIDISRNNFSGKIPLEVT---NLKALQSLNFSYNSFTG----RIPESIGVMRSLESIDFSANQLSGEIPES-  859 (979)
Q Consensus       788 ~~~~~~L~~LdLs~N~l~~~ip~~l~---~l~~L~~L~Ls~N~l~~----~ip~~~~~l~~L~~LdLs~N~l~~~ip~~-  859 (979)
                         ++.|+.|++++|++++..+..+.   ....++.++|++|.+++    .+|+.++.+++|+.|||++|+++ .+|.. 
T Consensus       221 ---~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~  296 (353)
T 2z80_A          221 ---TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGI  296 (353)
T ss_dssp             ---TTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTT
T ss_pred             ---cccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHH
Confidence               34458999999999976665543   46778899999999887    47888999999999999999999 56666 


Q ss_pred             CCCCCCCCEEEccCCcccccCCC
Q 042359          860 MSSLTFLNHLNLSNNNLTGKIPS  882 (979)
Q Consensus       860 l~~l~~L~~L~ls~N~l~g~ip~  882 (979)
                      ++.+++|++|++++|+++|.+|.
T Consensus       297 ~~~l~~L~~L~L~~N~~~~~~~~  319 (353)
T 2z80_A          297 FDRLTSLQKIWLHTNPWDCSCPR  319 (353)
T ss_dssp             TTTCTTCCEEECCSSCBCCCHHH
T ss_pred             HhcCCCCCEEEeeCCCccCcCCC
Confidence            58999999999999999998774

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=4.2e-27  Score=256.13  Aligned_cols=233  Identities=21%  Similarity=0.264  Sum_probs=183.9

Q ss_pred             CcccEEeccCccccccCCccccCCCCCCEEEccCCcccc--cCCcccCCCCCccEEEcCCccccccccccccCCCCCCEE
Q 042359          601 KSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTG--NLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESL  678 (979)
Q Consensus       601 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  678 (979)
                      ++|++|++++|++.+..+..+.++++|++|++++|+++.  ..|..+..+++|++|++++|.++ .+|..+..+++|++|
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L  106 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL  106 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence            466677777777664434446777788888888887763  23555666778888888888877 466667788888888


Q ss_pred             eccCCcccccCC-hhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCcccc-ccCcchhhcccCcccccccc
Q 042359          679 DVGENEFVGNIP-TWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSG-AIPNCINNLTGMVTACSFTR  756 (979)
Q Consensus       679 ~L~~N~l~~~ip-~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~l~~~~~~~~  756 (979)
                      ++++|++++..+ ..+. .+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+ .+|..+..++.|        
T Consensus       107 ~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L--------  177 (306)
T 2z66_A          107 DFQHSNLKQMSEFSVFL-SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL--------  177 (306)
T ss_dssp             ECTTSEEESSTTTTTTT-TCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC--------
T ss_pred             ECCCCcccccccchhhh-hccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCC--------
Confidence            888888875433 2343 67888888888888888888888888999999999998876 567766666555        


Q ss_pred             cccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCC
Q 042359          757 SVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESI  836 (979)
Q Consensus       757 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~  836 (979)
                                                            +.|||++|++++..|..++.+++|+.|+|++|++++..+..+
T Consensus       178 --------------------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  219 (306)
T 2z66_A          178 --------------------------------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY  219 (306)
T ss_dssp             --------------------------------------CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGG
T ss_pred             --------------------------------------CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhc
Confidence                                                  789999999998888899999999999999999997777788


Q ss_pred             CccCCCCEEECcCCcccccCCCCCCCCC-CCCEEEccCCcccccCC
Q 042359          837 GVMRSLESIDFSANQLSGEIPESMSSLT-FLNHLNLSNNNLTGKIP  881 (979)
Q Consensus       837 ~~l~~L~~LdLs~N~l~~~ip~~l~~l~-~L~~L~ls~N~l~g~ip  881 (979)
                      ..+++|+.|||++|++++..|..+..++ +|++|++++|+++|..+
T Consensus       220 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~  265 (306)
T 2z66_A          220 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  265 (306)
T ss_dssp             TTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred             cCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence            8899999999999999999999999884 89999999999987643

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=1.4e-27  Score=259.94  Aligned_cols=275  Identities=20%  Similarity=0.232  Sum_probs=221.1

Q ss_pred             EEEeecccCCCCCCccCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCcccccc--CCccccCCCCCCEEEcc
Q 042359          556 ILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGE--LPDCWMSYQNLKTLKLS  633 (979)
Q Consensus       556 ~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~Ls  633 (979)
                      .++.+++.++......++++++|++++|.++...+..    +..+++|++|++++|.+...  .|..+..+++|++|+++
T Consensus        11 ~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls   86 (306)
T 2z66_A           11 EIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGV----FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS   86 (306)
T ss_dssp             EEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTT----TTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred             EEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhH----hhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence            3444444444444444678888888888887433322    34588999999999988733  35667788999999999


Q ss_pred             CCcccccCCcccCCCCCccEEEcCCcccccccc-ccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccC
Q 042359          634 NNKFTGNLPYSMGSLTSLVWLHLGENRLSGNIL-VSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHG  712 (979)
Q Consensus       634 ~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~  712 (979)
                      +|.+. .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..|..+. .+++|+.|++++|.+++
T Consensus        87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~  164 (306)
T 2z66_A           87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQE  164 (306)
T ss_dssp             SCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTT-TCTTCCEEECTTCEEGG
T ss_pred             CCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcc-cCcCCCEEECCCCcccc
Confidence            99998 577778899999999999999987655 5788999999999999999877777665 78999999999999987


Q ss_pred             -CCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhc
Q 042359          713 -PLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDIL  791 (979)
Q Consensus       713 -~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  791 (979)
                       .+|..+..+++|+.|++++|++++..|..+.+++.|                                           
T Consensus       165 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-------------------------------------------  201 (306)
T 2z66_A          165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL-------------------------------------------  201 (306)
T ss_dssp             GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC-------------------------------------------
T ss_pred             ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCC-------------------------------------------
Confidence             578889999999999999999998888887776665                                           


Q ss_pred             cceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCcc-CCCCEEECcCCcccccCC--CCCCCCCCCCE
Q 042359          792 NLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVM-RSLESIDFSANQLSGEIP--ESMSSLTFLNH  868 (979)
Q Consensus       792 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l-~~L~~LdLs~N~l~~~ip--~~l~~l~~L~~  868 (979)
                         +.|+|++|++++..+..+..+++|+.|+|++|++++.+|..+..+ ++|++|||++|++++..+  ....-+...+.
T Consensus       202 ---~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~  278 (306)
T 2z66_A          202 ---QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQ  278 (306)
T ss_dssp             ---CEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGG
T ss_pred             ---CEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhh
Confidence               899999999998888889999999999999999999999999998 499999999999987532  11122333445


Q ss_pred             EEccCCcccccCCC
Q 042359          869 LNLSNNNLTGKIPS  882 (979)
Q Consensus       869 L~ls~N~l~g~ip~  882 (979)
                      +.+..+.+.+..|.
T Consensus       279 ~~~~~~~~~C~~p~  292 (306)
T 2z66_A          279 LLVEVERMECATPS  292 (306)
T ss_dssp             GBSCGGGCBEEESG
T ss_pred             hhccccccccCCch
Confidence            56677788877775

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=8.2e-28  Score=262.03  Aligned_cols=244  Identities=19%  Similarity=0.246  Sum_probs=152.4

Q ss_pred             CCcEEEcccccccccCChhhhhcccCCCcccEEeccCccc-cccCCcccc-------CCCCCCEEEccCCcccccCCccc
Q 042359          574 NLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYL-NGELPDCWM-------SYQNLKTLKLSNNKFTGNLPYSM  645 (979)
Q Consensus       574 ~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l-~~~~p~~~~-------~l~~L~~L~Ls~N~l~~~~p~~l  645 (979)
                      +|+++++++|.+  .+|..+..      .|+.|++++|.+ .+.+|..+.       ++++|++|++++|++++.+|..+
T Consensus        44 ~L~~l~l~~n~l--~~p~~~~~------~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  115 (312)
T 1wwl_A           44 SLEYLLKRVDTE--ADLGQFTD------IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL  115 (312)
T ss_dssp             ECTTHHHHCCTT--CCCHHHHH------HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred             CceeEeeccccc--ccHHHHHH------HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence            455555555555  44444332      255556666655 233444333       45566666666666665555554


Q ss_pred             --CCCCCccEEEcCCccccccccccccCC-----CCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCC--CCc
Q 042359          646 --GSLTSLVWLHLGENRLSGNILVSLKNC-----TALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGP--LPT  716 (979)
Q Consensus       646 --~~l~~L~~L~L~~n~l~~~~p~~l~~l-----~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~--~p~  716 (979)
                        ..+++|++|++++|++++. |..+..+     ++|++|++++|++.+..|..+. .+++|+.|++++|++.+.  .|.
T Consensus       116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~  193 (312)
T 1wwl_A          116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR-VFPALSTLDLSDNPELGERGLIS  193 (312)
T ss_dssp             SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC-CCSSCCEEECCSCTTCHHHHHHH
T ss_pred             HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc-cCCCCCEEECCCCCcCcchHHHH
Confidence              5566666666666666554 5444444     5666666666666544444444 456666666666665543  223


Q ss_pred             cc--cCCCCccEEEccCCcccc--ccCcc-hhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhc
Q 042359          717 GL--CDLAFLQILDIADNNLSG--AIPNC-INNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDIL  791 (979)
Q Consensus       717 ~l--~~l~~L~~L~Ls~n~l~~--~~p~~-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  791 (979)
                      .+  ..+++|+.|++++|++++  .++.. +.+                                              +
T Consensus       194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~----------------------------------------------l  227 (312)
T 1wwl_A          194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAA----------------------------------------------R  227 (312)
T ss_dssp             HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHT----------------------------------------------T
T ss_pred             HHHhccCCCCCEEECCCCcCcchHHHHHHHHhc----------------------------------------------C
Confidence            33  667777777777777762  11111 112                                              2


Q ss_pred             cceeEEecccCccccccc-ccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEE
Q 042359          792 NLVRMIDISRNNFSGKIP-LEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLN  870 (979)
Q Consensus       792 ~~L~~LdLs~N~l~~~ip-~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~  870 (979)
                      +.|+.|||++|++++.+| ..+..+++|+.|+|++|+++ .+|..+.  ++|++|||++|++++. |. +..+++|++|+
T Consensus       228 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~  302 (312)
T 1wwl_A          228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLS  302 (312)
T ss_dssp             CCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEE
T ss_pred             CCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEe
Confidence            345788888888887775 45566788888888888888 7787776  7888888888888865 65 78888888888


Q ss_pred             ccCCcccc
Q 042359          871 LSNNNLTG  878 (979)
Q Consensus       871 ls~N~l~g  878 (979)
                      +++|++++
T Consensus       303 L~~N~l~~  310 (312)
T 1wwl_A          303 LKGNPFLD  310 (312)
T ss_dssp             CTTCTTTC
T ss_pred             ccCCCCCC
Confidence            88888875

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=1.2e-26  Score=258.06  Aligned_cols=265  Identities=20%  Similarity=0.244  Sum_probs=166.6

Q ss_pred             cccccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccc
Q 042359          114 KINPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWL  193 (979)
Q Consensus       114 ~~~~~l~~l~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l  193 (979)
                      .+|..+.  ++|++|++++|.++++ .+..++.+++|++|++++|.+++..|..|+++++|++|++++|.+..++.    
T Consensus        45 ~iP~~~~--~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----  117 (353)
T 2z80_A           45 SIPSGLT--EAVKSLDLSNNRITYI-SNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSS----  117 (353)
T ss_dssp             SCCTTCC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCH----
T ss_pred             ccccccc--ccCcEEECCCCcCccc-CHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCH----
Confidence            4555554  4899999999999875 34578999999999999999988778888888888888888887765542    


Q ss_pred             cCCCCCCEEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCCh-hhhcCCCCCCEEECCCCC-CCCCCCCCccccc
Q 042359          194 SGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSL-LATANFSSLTVLDLSDNQ-FDKWFIPSWVFGP  271 (979)
Q Consensus       194 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~  271 (979)
                                             ..+..+++|++|++++|++++++. ..+..+++|++|++++|. ++         ..
T Consensus       118 -----------------------~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~---------~~  165 (353)
T 2z80_A          118 -----------------------SWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT---------KI  165 (353)
T ss_dssp             -----------------------HHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC---------EE
T ss_pred             -----------------------hHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc---------cc
Confidence                                   123445555555555555555444 455556666666666653 33         22


Q ss_pred             CCccccCCCCCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCccccc
Q 042359          272 IPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMA  351 (979)
Q Consensus       272 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~  351 (979)
                      .+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+. .++...+..+++|++|++++| .+.+..+..+.
T Consensus       166 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~  243 (353)
T 2z80_A          166 QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDT-DLDTFHFSELS  243 (353)
T ss_dssp             CTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESC-BCTTCCCC---
T ss_pred             CHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCC-ccccccccccc
Confidence            3445556666666666666666555666666666666666666654 332333444566666666666 44433322221


Q ss_pred             ---CCCCCCeeeccCccCCcccchhhhhccccccCCCcEEECcCCcCcc----ccccccCCCCCCcEEeccCCcCcccCc
Q 042359          352 ---SLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYG----HLTDQLGQFKNIVTLDFANNSIVGLIP  424 (979)
Q Consensus       352 ---~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~p  424 (979)
                         ....                             ++.++++++.+.+    .+|..+..+++|++|++++|+++...+
T Consensus       244 ~~~~~~~-----------------------------l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~  294 (353)
T 2z80_A          244 TGETNSL-----------------------------IKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPD  294 (353)
T ss_dssp             ---CCCC-----------------------------CCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCT
T ss_pred             cccccch-----------------------------hhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCH
Confidence               1122                             4444454444443    345567777888888888888874433


Q ss_pred             ccccCCCCCCEEEcCCCcCccccC
Q 042359          425 ESLGQLSTLRVLRINDNKLNGTLS  448 (979)
Q Consensus       425 ~~l~~l~~L~~L~L~~n~l~~~l~  448 (979)
                      ..|..+++|++|++++|++.+..+
T Consensus       295 ~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          295 GIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             TTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             HHHhcCCCCCEEEeeCCCccCcCC
Confidence            335778888888888888776544

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.94  E-value=3.8e-28  Score=290.76  Aligned_cols=234  Identities=11%  Similarity=0.087  Sum_probs=136.1

Q ss_pred             CChhhhCCCCccEEEccCCCCCCCCchHHHhcCCCccEEEcccCcCCCCCCC-cccccCCcEEEeec-----------cc
Q 042359          496 FPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPN-LTEFTGLLILSVYS-----------NN  563 (979)
Q Consensus       496 ~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-l~~~~~L~~L~l~~-----------n~  563 (979)
                      +|..+..+++|++|++++|.+.+.....+...+++|++|+++++...+.++. ...+++|+.|++++           +.
T Consensus       285 l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~  364 (592)
T 3ogk_B          285 MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGL  364 (592)
T ss_dssp             GGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCC
T ss_pred             HHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCc
Confidence            3344444455555555555543333333334455555555552211111221 12344555555552           23


Q ss_pred             CCCCC----CccCCCCcEEEcccccccccCChhhhhcccCCCcccEEecc----Ccccccc-----CCccccCCCCCCEE
Q 042359          564 MSGPL----PLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLN----DNYLNGE-----LPDCWMSYQNLKTL  630 (979)
Q Consensus       564 l~~~~----~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls----~n~l~~~-----~p~~~~~l~~L~~L  630 (979)
                      +++..    ...+++|++|+++.|.+++..+..+..   .+++|+.|+++    .|.+++.     ++..+.++++|++|
T Consensus       365 ~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~---~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L  441 (592)
T 3ogk_B          365 VSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT---YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRF  441 (592)
T ss_dssp             CCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH---HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEE
T ss_pred             cCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHh---hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEE
Confidence            32211    112567778888777776654443322   26778888885    5566643     33335668888888


Q ss_pred             EccCCc--ccccCCcccC-CCCCccEEEcCCcccccc-ccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeecc
Q 042359          631 KLSNNK--FTGNLPYSMG-SLTSLVWLHLGENRLSGN-ILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILR  706 (979)
Q Consensus       631 ~Ls~N~--l~~~~p~~l~-~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~  706 (979)
                      ++++|.  +++..+..+. .+++|++|++++|++++. ++..+.++++|++|++++|++++....++...+++|+.|+++
T Consensus       442 ~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls  521 (592)
T 3ogk_B          442 AFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQ  521 (592)
T ss_dssp             EEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEE
T ss_pred             EEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECc
Confidence            887544  5544444443 377899999999888763 455567888999999999988765444444468889999999


Q ss_pred             CCcccCCCCccc-cCCCCccEEEccCC
Q 042359          707 SNKFHGPLPTGL-CDLAFLQILDIADN  732 (979)
Q Consensus       707 ~n~l~~~~p~~l-~~l~~L~~L~Ls~n  732 (979)
                      +|++++.....+ ..++.+....+..+
T Consensus       522 ~n~it~~~~~~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          522 GYRASMTGQDLMQMARPYWNIELIPSR  548 (592)
T ss_dssp             SCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred             CCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence            998876533333 34566666555543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=9.9e-26  Score=259.38  Aligned_cols=231  Identities=21%  Similarity=0.218  Sum_probs=174.2

Q ss_pred             CcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEec
Q 042359          601 KSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDV  680 (979)
Q Consensus       601 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  680 (979)
                      ++++.|+|++|++.+..|..|.++++|++|++++|++++..|..|..+++|++|+|++|++++..+..+.++++|++|++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            45666666666666666666777777777777777777666667777777777777777777655566777777777777


Q ss_pred             cCCcccccCChhHHHhhhccceeeccCCcccCCCC-ccccCCCCccEEEccCCccccccCcchhhcccCccccccccccc
Q 042359          681 GENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLP-TGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQ  759 (979)
Q Consensus       681 ~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~  759 (979)
                      ++|++. .+|...+..+++|+.|++++|...+.+| ..+..+++|+.|++++|++++ +|. +..+              
T Consensus       155 ~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~-~~~l--------------  217 (452)
T 3zyi_A          155 RNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPN-LTPL--------------  217 (452)
T ss_dssp             CSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CCC-CTTC--------------
T ss_pred             CCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-ccc-cccc--------------
Confidence            777776 3443333367777777777744333443 457788888888888888873 332 3333              


Q ss_pred             ccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCcc
Q 042359          760 QYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVM  839 (979)
Q Consensus       760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l  839 (979)
                                                      ..|+.|||++|++++..|..|.++++|+.|+|++|++++..|..|..+
T Consensus       218 --------------------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  265 (452)
T 3zyi_A          218 --------------------------------VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL  265 (452)
T ss_dssp             --------------------------------TTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred             --------------------------------ccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCC
Confidence                                            334889999999998889999999999999999999999889999999


Q ss_pred             CCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCcccccC
Q 042359          840 RSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKI  880 (979)
Q Consensus       840 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~i  880 (979)
                      ++|+.|||++|++++..+..+..+++|+.|+|++|++.+..
T Consensus       266 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC  306 (452)
T 3zyi_A          266 ASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDC  306 (452)
T ss_dssp             TTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECST
T ss_pred             CCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCC
Confidence            99999999999999888888899999999999999987643

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=1.2e-25  Score=257.77  Aligned_cols=230  Identities=23%  Similarity=0.228  Sum_probs=169.7

Q ss_pred             CcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEec
Q 042359          601 KSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDV  680 (979)
Q Consensus       601 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  680 (979)
                      ++++.|+|++|++.+..+..|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|..+++|++|++
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  143 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL  143 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence            45566666666666555566666667777777777766555566666777777777777776555556667777777777


Q ss_pred             cCCcccccCChhHHHhhhccceeeccCCcccCCC-CccccCCCCccEEEccCCccccccCcchhhcccCccccccccccc
Q 042359          681 GENEFVGNIPTWIGERFSRMVVLILRSNKFHGPL-PTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQ  759 (979)
Q Consensus       681 ~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~  759 (979)
                      ++|++.. +|...+..+++|+.|++++|...+.+ +..+..+++|+.|++++|+++ .+|. +..+              
T Consensus       144 ~~N~i~~-~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~l--------------  206 (440)
T 3zyj_A          144 RNNPIES-IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPL--------------  206 (440)
T ss_dssp             CSCCCCE-ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-CTTC--------------
T ss_pred             CCCcccc-cCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-cCCC--------------
Confidence            7777663 33322235677777777764433333 345778888888888888886 4442 3333              


Q ss_pred             ccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCcc
Q 042359          760 QYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVM  839 (979)
Q Consensus       760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l  839 (979)
                                                      +.|+.|||++|++++..|..|.++++|+.|+|++|++++..|..|..+
T Consensus       207 --------------------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  254 (440)
T 3zyj_A          207 --------------------------------IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL  254 (440)
T ss_dssp             --------------------------------SSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTC
T ss_pred             --------------------------------cccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCC
Confidence                                            334889999999998889999999999999999999999889999999


Q ss_pred             CCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCccccc
Q 042359          840 RSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGK  879 (979)
Q Consensus       840 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~  879 (979)
                      ++|+.|||++|++++..+..+..+++|+.|+|++|++.+.
T Consensus       255 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd  294 (440)
T 3zyj_A          255 QSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCN  294 (440)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred             CCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCC
Confidence            9999999999999988888889999999999999998764

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=2.6e-26  Score=246.97  Aligned_cols=228  Identities=21%  Similarity=0.188  Sum_probs=158.6

Q ss_pred             cEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCC
Q 042359          604 NALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGEN  683 (979)
Q Consensus       604 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N  683 (979)
                      +.++.+++.+. .+|..+  .++|++|++++|++++..+..|..+++|++|++++|.+++..|..+.++++|++|++++|
T Consensus        14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            34455555554 334332  246666666666666555556666667777777777666666666666777777777777


Q ss_pred             c-ccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccC
Q 042359          684 E-FVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYL  762 (979)
Q Consensus       684 ~-l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~  762 (979)
                      + +....|..+. .+++|+.|++++|++++..|..+..+++|+.|++++|++++..+..++.+++|              
T Consensus        91 ~~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--------------  155 (285)
T 1ozn_A           91 AQLRSVDPATFH-GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL--------------  155 (285)
T ss_dssp             TTCCCCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC--------------
T ss_pred             CCccccCHHHhc-CCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCc--------------
Confidence            5 4432244443 56777777777777776666777777788888888887775555555555444              


Q ss_pred             CCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCC
Q 042359          763 PLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSL  842 (979)
Q Consensus       763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L  842 (979)
                                                      +.|+|++|++++..+..+..+++|+.|+|++|++++..|..++.+++|
T Consensus       156 --------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  203 (285)
T 1ozn_A          156 --------------------------------THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL  203 (285)
T ss_dssp             --------------------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             --------------------------------cEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccc
Confidence                                            678888888876666668888888888888888888878888888888


Q ss_pred             CEEECcCCcccccCCCCCCCCCCCCEEEccCCcccccCC
Q 042359          843 ESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIP  881 (979)
Q Consensus       843 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip  881 (979)
                      +.||+++|++++..|..+..+++|++|++++|++++..+
T Consensus       204 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~  242 (285)
T 1ozn_A          204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (285)
T ss_dssp             CEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             cEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence            888888888887666778888888888888888887554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=1.5e-25  Score=257.93  Aligned_cols=250  Identities=20%  Similarity=0.180  Sum_probs=218.6

Q ss_pred             CcEEEeecccCCCCCCccCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEcc
Q 042359          554 LLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLS  633 (979)
Q Consensus       554 L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls  633 (979)
                      ...++.++..++......++++++|++++|.+++..+..+    ..+++|+.|+|++|.+.+..|..|.++++|++|+|+
T Consensus        56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~----~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTF----RHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTT----TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHc----CCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            3455555555555444456789999999999988766554    558999999999999998888999999999999999


Q ss_pred             CCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCC
Q 042359          634 NNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGP  713 (979)
Q Consensus       634 ~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~  713 (979)
                      +|++++..+..|..+++|++|++++|++++..+..|.++++|++|++++|+..+.+|...+..+++|+.|++++|++++.
T Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~  211 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM  211 (452)
T ss_dssp             SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred             CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence            99999777777999999999999999999877778999999999999997666677776555899999999999999854


Q ss_pred             CCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccc
Q 042359          714 LPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNL  793 (979)
Q Consensus       714 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (979)
                       | .+..+++|+.|++++|++++..|..+.+++.|                                             
T Consensus       212 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L---------------------------------------------  244 (452)
T 3zyi_A          212 -P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSL---------------------------------------------  244 (452)
T ss_dssp             -C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTC---------------------------------------------
T ss_pred             -c-cccccccccEEECcCCcCcccCcccccCccCC---------------------------------------------
Confidence             4 58899999999999999998888888877766                                             


Q ss_pred             eeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCccccc
Q 042359          794 VRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGE  855 (979)
Q Consensus       794 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~  855 (979)
                       +.|+|++|++++..|..|.++++|+.|+|++|++++..+..+..+++|+.|+|++|.+...
T Consensus       245 -~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd  305 (452)
T 3zyi_A          245 -KKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD  305 (452)
T ss_dssp             -CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred             -CEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence             8999999999999999999999999999999999988888899999999999999998754

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=2.3e-26  Score=247.43  Aligned_cols=252  Identities=16%  Similarity=0.186  Sum_probs=188.3

Q ss_pred             cEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEE
Q 042359          576 VFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLH  655 (979)
Q Consensus       576 ~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  655 (979)
                      +.++.+++.++. +|..+      .++|++|++++|.+.+..+..+..+++|++|++++|.+++..|..|..+++|++|+
T Consensus        14 ~~~~c~~~~l~~-ip~~~------~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   86 (285)
T 1ozn_A           14 VTTSCPQQGLQA-VPVGI------PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLD   86 (285)
T ss_dssp             CEEECCSSCCSS-CCTTC------CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             eEEEcCcCCccc-CCcCC------CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEe
Confidence            445555555543 23211      35677777777777766666777778888888888888776677788888888888


Q ss_pred             cCCcc-ccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCcc
Q 042359          656 LGENR-LSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNL  734 (979)
Q Consensus       656 L~~n~-l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l  734 (979)
                      +++|+ +....|..+..+++|++|++++|.+++..|..+. .+++|++|++++|++++..+..+..+++|+.|++++|++
T Consensus        87 l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  165 (285)
T 1ozn_A           87 LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR-GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI  165 (285)
T ss_dssp             CCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhh-CCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcc
Confidence            88886 6665577788888888888888888765555554 678888888888888876666788888999999999988


Q ss_pred             ccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccC
Q 042359          735 SGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTN  814 (979)
Q Consensus       735 ~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~  814 (979)
                      ++..+..+..++.|                                              +.|+|++|++++..|..++.
T Consensus       166 ~~~~~~~~~~l~~L----------------------------------------------~~L~l~~n~l~~~~~~~~~~  199 (285)
T 1ozn_A          166 SSVPERAFRGLHSL----------------------------------------------DRLLLHQNRVAHVHPHAFRD  199 (285)
T ss_dssp             CEECTTTTTTCTTC----------------------------------------------CEEECCSSCCCEECTTTTTT
T ss_pred             cccCHHHhcCcccc----------------------------------------------CEEECCCCcccccCHhHccC
Confidence            86555556655554                                              78899999999888899999


Q ss_pred             CCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCcccccCCC
Q 042359          815 LKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPS  882 (979)
Q Consensus       815 l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~  882 (979)
                      +++|+.|++++|++++..|..+..+++|+.|+|++|++.+..+.. .-...++.++.+.|.+.+..|.
T Consensus       200 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~  266 (285)
T 1ozn_A          200 LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQ  266 (285)
T ss_dssp             CTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESG
T ss_pred             cccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCch
Confidence            999999999999999766677888999999999999998754421 1123345556778888888885

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=2.3e-25  Score=255.32  Aligned_cols=250  Identities=22%  Similarity=0.211  Sum_probs=217.7

Q ss_pred             CcEEEeecccCCCCCCccCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEcc
Q 042359          554 LLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLS  633 (979)
Q Consensus       554 L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls  633 (979)
                      ...++.+++.++......+++++.|++++|.+.+..+..    +..+++|+.|+|++|.+.+..+..|.++++|++|+++
T Consensus        45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~----~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNS----FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTT----TSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHH----hhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            445566666666555555788999999999998776654    4568999999999999998888899999999999999


Q ss_pred             CCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCC
Q 042359          634 NNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGP  713 (979)
Q Consensus       634 ~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~  713 (979)
                      +|++++..+..|..+++|++|++++|++++..+..|.++++|++|++++|+..+.++...+..+++|+.|++++|+++ .
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~  199 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E  199 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence            999996666689999999999999999998777899999999999999977666777765558999999999999998 4


Q ss_pred             CCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccc
Q 042359          714 LPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNL  793 (979)
Q Consensus       714 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (979)
                      +| .+..+++|+.|++++|++++..|..+.+++.|                                             
T Consensus       200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L---------------------------------------------  233 (440)
T 3zyj_A          200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHL---------------------------------------------  233 (440)
T ss_dssp             CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTC---------------------------------------------
T ss_pred             cc-ccCCCcccCEEECCCCccCccChhhhccCccC---------------------------------------------
Confidence            55 58899999999999999998888888877766                                             


Q ss_pred             eeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCccccc
Q 042359          794 VRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGE  855 (979)
Q Consensus       794 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~  855 (979)
                       +.|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|.+...
T Consensus       234 -~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd  294 (440)
T 3zyj_A          234 -QKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCN  294 (440)
T ss_dssp             -CEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred             -CEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCC
Confidence             8999999999999999999999999999999999988888899999999999999998753

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=4.8e-27  Score=255.96  Aligned_cols=247  Identities=19%  Similarity=0.240  Sum_probs=209.3

Q ss_pred             CCCcccEEeccCccccccCCccccCCCCCCEEEccCCcc-cccCCcccC-------CCCCccEEEcCCccccccccccc-
Q 042359          599 ETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKF-TGNLPYSMG-------SLTSLVWLHLGENRLSGNILVSL-  669 (979)
Q Consensus       599 ~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l-~~~~p~~l~-------~l~~L~~L~L~~n~l~~~~p~~l-  669 (979)
                      ..++|+.+++++|.+  .+|..+...  |+.|++++|++ .+.+|..+.       .+++|++|++++|++++.+|..+ 
T Consensus        41 ~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  116 (312)
T 1wwl_A           41 GGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL  116 (312)
T ss_dssp             EEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred             cCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence            367899999999999  778766654  99999999999 456776655       78999999999999999999886 


Q ss_pred             -cCCCCCCEEeccCCcccccCChhHHHhh-----hccceeeccCCcccCCCCccccCCCCccEEEccCCcccccc--Ccc
Q 042359          670 -KNCTALESLDVGENEFVGNIPTWIGERF-----SRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAI--PNC  741 (979)
Q Consensus       670 -~~l~~L~~L~L~~N~l~~~ip~~~~~~l-----~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~--p~~  741 (979)
                       ..+++|++|++++|++++. |..+. .+     ++|++|++++|++++..|..+..+++|+.|++++|++.+.+  |..
T Consensus       117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~-~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  194 (312)
T 1wwl_A          117 EATGPDLNILNLRNVSWATR-DAWLA-ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA  194 (312)
T ss_dssp             SCCSCCCSEEEEESCBCSSS-SSHHH-HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred             HhcCCCccEEEccCCCCcch-hHHHH-HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence             8999999999999999976 87776 56     89999999999999988899999999999999999987653  322


Q ss_pred             h--hhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccc--ccc-ccccCCC
Q 042359          742 I--NNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSG--KIP-LEVTNLK  816 (979)
Q Consensus       742 ~--~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~--~ip-~~l~~l~  816 (979)
                      +  .+++                                              .|+.|+|++|++++  .++ ..+.+++
T Consensus       195 ~~~~~l~----------------------------------------------~L~~L~L~~N~l~~~~~~~~~~~~~l~  228 (312)
T 1wwl_A          195 LCPLKFP----------------------------------------------TLQVLALRNAGMETPSGVCSALAAARV  228 (312)
T ss_dssp             SCTTSCT----------------------------------------------TCCEEECTTSCCCCHHHHHHHHHHTTC
T ss_pred             HHhccCC----------------------------------------------CCCEEECCCCcCcchHHHHHHHHhcCC
Confidence            2  3333                                              45899999999983  333 3446889


Q ss_pred             CCCEEeCCCCcceeccC-CCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCcccccCCCCccCCCccccccC
Q 042359          817 ALQSLNFSYNSFTGRIP-ESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSSTQLQSFDVSSFA  895 (979)
Q Consensus       817 ~L~~L~Ls~N~l~~~ip-~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~  895 (979)
                      +|+.|+|++|++++.+| ..+..+++|++|||++|+++ .+|..+.  ++|++||+++|++++. |....+..+....+.
T Consensus       229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~  304 (312)
T 1wwl_A          229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLK  304 (312)
T ss_dssp             CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECT
T ss_pred             CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEecc
Confidence            99999999999998886 56777899999999999999 8888877  8999999999999986 766677778888888


Q ss_pred             CCCCCC
Q 042359          896 GNDLCG  901 (979)
Q Consensus       896 ~n~lcg  901 (979)
                      +|.+.+
T Consensus       305 ~N~l~~  310 (312)
T 1wwl_A          305 GNPFLD  310 (312)
T ss_dssp             TCTTTC
T ss_pred             CCCCCC
Confidence            887654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=2.5e-24  Score=253.39  Aligned_cols=261  Identities=25%  Similarity=0.302  Sum_probs=182.9

Q ss_pred             ccEEEcccCcCCCCCCCcccccCCcEEEeecccCCCCCCccCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccC
Q 042359          531 LKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLND  610 (979)
Q Consensus       531 L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~  610 (979)
                      ++.|++++|.++...+.+.  ++|+.|++++|.++. +|..+++|++|++++|++++ +|.       .+++|++|++++
T Consensus        42 l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~-lp~~l~~L~~L~Ls~N~l~~-lp~-------~l~~L~~L~Ls~  110 (622)
T 3g06_A           42 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTS-LPALPPELRTLEVSGNQLTS-LPV-------LPPGLLELSIFS  110 (622)
T ss_dssp             CCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSC-CCCCCTTCCEEEECSCCCSC-CCC-------CCTTCCEEEECS
T ss_pred             CcEEEecCCCcCccChhhC--CCCcEEEecCCCCCC-CCCcCCCCCEEEcCCCcCCc-CCC-------CCCCCCEEECcC
Confidence            5555555555552222222  455555666555553 33355677777777777664 332       257777777777


Q ss_pred             ccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCC
Q 042359          611 NYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIP  690 (979)
Q Consensus       611 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip  690 (979)
                      |.+++ +|.   .+++|+.|++++|++++ +|..   +++|++|++++|++++ +|.   .+++|+.|++++|.++ .+|
T Consensus       111 N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~  177 (622)
T 3g06_A          111 NPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLT-SLP  177 (622)
T ss_dssp             CCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCC
T ss_pred             CcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCC-CCc
Confidence            77774 343   45678888888888773 5543   3778888888888774 343   3467888888888887 466


Q ss_pred             hhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccce
Q 042359          691 TWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGV  770 (979)
Q Consensus       691 ~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  770 (979)
                      .    .+++|+.|++++|++++ +|..   +++|+.|++++|.++ .+|..+                            
T Consensus       178 ~----~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~~----------------------------  220 (622)
T 3g06_A          178 M----LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPALP----------------------------  220 (622)
T ss_dssp             C----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCCC----------------------------
T ss_pred             c----cCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCCC----------------------------
Confidence            2    46788888888888874 4433   467888888888876 344321                            


Q ss_pred             eeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCC
Q 042359          771 ILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSAN  850 (979)
Q Consensus       771 ~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N  850 (979)
                                           +.|+.|+|++|++++ +|   ..+++|+.|+|++|+|+ .+|.   .+++|+.|+|++|
T Consensus       221 ---------------------~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N  271 (622)
T 3g06_A          221 ---------------------SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRN  271 (622)
T ss_dssp             ---------------------TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSS
T ss_pred             ---------------------CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCC
Confidence                                 234788999999985 66   45688999999999998 6776   5688999999999


Q ss_pred             cccccCCCCCCCCCCCCEEEccCCcccccCCC
Q 042359          851 QLSGEIPESMSSLTFLNHLNLSNNNLTGKIPS  882 (979)
Q Consensus       851 ~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~  882 (979)
                      +|+ .+|..+..+++|+.|+|++|+++|.+|.
T Consensus       272 ~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          272 QLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             CCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred             CCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence            998 7888899999999999999999987764

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=2.5e-25  Score=257.07  Aligned_cols=223  Identities=18%  Similarity=0.176  Sum_probs=188.2

Q ss_pred             cCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCE
Q 042359          598 NETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALES  677 (979)
Q Consensus       598 ~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  677 (979)
                      ..+++|+.|+|++|.+++..|..+..+++|++|+|++|.+++..|  +..+++|++|++++|.+++..+     .++|++
T Consensus        31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~  103 (487)
T 3oja_A           31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIET  103 (487)
T ss_dssp             TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCE
T ss_pred             ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCE
Confidence            345689999999999998888889999999999999999987665  8889999999999999986433     388999


Q ss_pred             EeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchh-hcccCcccccccc
Q 042359          678 LDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCIN-NLTGMVTACSFTR  756 (979)
Q Consensus       678 L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~l~~~~~~~~  756 (979)
                      |++++|.+++..+.    .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++.+|..+. +++.|        
T Consensus       104 L~L~~N~l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L--------  171 (487)
T 3oja_A          104 LHAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL--------  171 (487)
T ss_dssp             EECCSSCCCCEEEC----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC--------
T ss_pred             EECcCCcCCCCCcc----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc--------
Confidence            99999999865543    367899999999999998888899999999999999999988887664 45544        


Q ss_pred             cccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCC
Q 042359          757 SVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESI  836 (979)
Q Consensus       757 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~  836 (979)
                                                            +.|+|++|.+++..+  +..+++|+.|+|++|++++. |..+
T Consensus       172 --------------------------------------~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~  210 (487)
T 3oja_A          172 --------------------------------------EHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFM-GPEF  210 (487)
T ss_dssp             --------------------------------------CEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEE-CGGG
T ss_pred             --------------------------------------cEEecCCCccccccc--cccCCCCCEEECCCCCCCCC-CHhH
Confidence                                                  889999999996633  34689999999999999964 4458


Q ss_pred             CccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCccc-ccCC
Q 042359          837 GVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLT-GKIP  881 (979)
Q Consensus       837 ~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~-g~ip  881 (979)
                      +.+++|+.|||++|++++ +|..+..+++|+.|++++|++. +.+|
T Consensus       211 ~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~  255 (487)
T 3oja_A          211 QSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLR  255 (487)
T ss_dssp             GGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred             cCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchH
Confidence            999999999999999995 7888999999999999999998 4444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=2e-26  Score=251.66  Aligned_cols=128  Identities=21%  Similarity=0.159  Sum_probs=58.3

Q ss_pred             CcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEec
Q 042359          601 KSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDV  680 (979)
Q Consensus       601 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  680 (979)
                      ++|++|++++|++.+..|..+..+++|++|++++|++++..+  +..+++|++|++++|++++..     ..++|++|++
T Consensus        34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l  106 (317)
T 3o53_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHA  106 (317)
T ss_dssp             GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEEC
T ss_pred             CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEEC
Confidence            344444444444444444444444445555555554443332  444445555555555444311     1244455555


Q ss_pred             cCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccC
Q 042359          681 GENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIP  739 (979)
Q Consensus       681 ~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p  739 (979)
                      ++|++++..+.    .+++|+.|++++|++++..|..+..+++|+.|++++|++++..|
T Consensus       107 ~~n~l~~~~~~----~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  161 (317)
T 3o53_A          107 ANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF  161 (317)
T ss_dssp             CSSCCSEEEEC----CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred             CCCccCCcCcc----ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence            55544432221    13445555555555544444444444555555555555544333

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=1.5e-25  Score=244.82  Aligned_cols=263  Identities=21%  Similarity=0.194  Sum_probs=214.6

Q ss_pred             cEEEeecccCCCCCC---ccCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEE
Q 042359          555 LILSVYSNNMSGPLP---LISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLK  631 (979)
Q Consensus       555 ~~L~l~~n~l~~~~~---~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  631 (979)
                      +..+++.+.+.....   ..+++|++|++++|.+++..|..+    ..+++|+.|++++|.+++..+  +..+++|++|+
T Consensus        13 ~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~   86 (317)
T 3o53_A           13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADL----APFTKLELLNLSSNVLYETLD--LESLSTLRTLD   86 (317)
T ss_dssp             EEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHH----TTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEE
T ss_pred             eEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHh----hCCCcCCEEECCCCcCCcchh--hhhcCCCCEEE
Confidence            344455555433222   225689999999999998766554    458999999999999987665  88999999999


Q ss_pred             ccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCccc
Q 042359          632 LSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFH  711 (979)
Q Consensus       632 Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~  711 (979)
                      +++|++++..     ..++|++|++++|++++..+..   +++|++|++++|++++..|..+. .+++|+.|++++|+++
T Consensus        87 Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~  157 (317)
T 3o53_A           87 LNNNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEID  157 (317)
T ss_dssp             CCSSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTG-GGSSEEEEECTTSCCC
T ss_pred             CcCCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhh-ccCCCCEEECCCCCCC
Confidence            9999998533     3489999999999999766554   67899999999999976565665 7999999999999999


Q ss_pred             CCCCcccc-CCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhh
Q 042359          712 GPLPTGLC-DLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDI  790 (979)
Q Consensus       712 ~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  790 (979)
                      +..|..+. .+++|+.|++++|++++. |... .                                              
T Consensus       158 ~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~-~----------------------------------------------  189 (317)
T 3o53_A          158 TVNFAELAASSDTLEHLNLQYNFIYDV-KGQV-V----------------------------------------------  189 (317)
T ss_dssp             EEEGGGGGGGTTTCCEEECTTSCCCEE-ECCC-C----------------------------------------------
T ss_pred             cccHHHHhhccCcCCEEECCCCcCccc-cccc-c----------------------------------------------
Confidence            88777764 789999999999998744 2211 1                                              


Q ss_pred             ccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCccc-ccCCCCCCCCCCCCEE
Q 042359          791 LNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLS-GEIPESMSSLTFLNHL  869 (979)
Q Consensus       791 ~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~-~~ip~~l~~l~~L~~L  869 (979)
                      ++.|+.|||++|++++ +|..+..+++|+.|+|++|+++ .+|..+..+++|+.|+|++|+++ +.+|..+..++.|+.+
T Consensus       190 l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l  267 (317)
T 3o53_A          190 FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV  267 (317)
T ss_dssp             CTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHH
T ss_pred             cccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEE
Confidence            2345899999999995 5666999999999999999999 68889999999999999999999 7888999999999999


Q ss_pred             Ecc-CCcccccCCC
Q 042359          870 NLS-NNNLTGKIPS  882 (979)
Q Consensus       870 ~ls-~N~l~g~ip~  882 (979)
                      +++ .+.++|..|.
T Consensus       268 ~l~~~~~l~~~~~~  281 (317)
T 3o53_A          268 AKQTVKKLTGQNEE  281 (317)
T ss_dssp             HHHHHHHHHSSSSC
T ss_pred             ECCCchhccCCchh
Confidence            998 5567777664

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=1.3e-24  Score=255.77  Aligned_cols=292  Identities=21%  Similarity=0.230  Sum_probs=164.6

Q ss_pred             CCCCCCCCCCCCccccceeccC------CCCcEEEEECCCCCCCCchhhHHHhhcccccccccccccCCCCCCEEeCCCC
Q 042359           60 NRLASWSGNGDCCAWAGVFCDN------ITGHVLHLDLRNPFNYHKESEYEAIRRTALVGKINPSLLDLKHLSYLDLSFN  133 (979)
Q Consensus        60 ~~l~~W~~~~~~c~w~gv~c~~------~~~~v~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n  133 (979)
                      ..++.|..+.+||.|+|..|.-      ....++.++++++               .+. .+|..+.  ++|++|+|++|
T Consensus        10 ~~w~~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n---------------~L~-~lp~~l~--~~L~~L~L~~N   71 (622)
T 3g06_A           10 AVWSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGES---------------GLT-TLPDCLP--AHITTLVIPDN   71 (622)
T ss_dssp             CHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSS---------------CCS-CCCSCCC--TTCSEEEECSC
T ss_pred             HHHHHHHhcCCcchhccccccCcccccccCCCCcEEEecCC---------------CcC-ccChhhC--CCCcEEEecCC
Confidence            3456787677899997753310      0123556666652               333 4555444  56666666666


Q ss_pred             CCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccccCCCCCCEEEccCccCCCCc
Q 042359          134 DFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAF  213 (979)
Q Consensus       134 ~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~l~~n~~~~~~  213 (979)
                      .++.  +|.   .+++|++|+|++|++++ +|.   .+++|++|++++|.+..++.     .+++|++|++++|.++.  
T Consensus        72 ~l~~--lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l~~-----~l~~L~~L~L~~N~l~~--  135 (622)
T 3g06_A           72 NLTS--LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTHLPA-----LPSGLCKLWIFGNQLTS--  135 (622)
T ss_dssp             CCSC--CCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCCCCC-----CCTTCCEEECCSSCCSC--
T ss_pred             CCCC--CCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCCCCC-----CCCCcCEEECCCCCCCc--
Confidence            6664  344   35666666666666653 443   45666666666666555443     34455555555555444  


Q ss_pred             hhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCccccCCCCCCEEeccCCcCc
Q 042359          214 DWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFN  293 (979)
Q Consensus       214 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~  293 (979)
                                              ++.    .+++|++|++++|.++.          +|.   .+++|+.|++++|.++
T Consensus       136 ------------------------lp~----~l~~L~~L~Ls~N~l~~----------l~~---~~~~L~~L~L~~N~l~  174 (622)
T 3g06_A          136 ------------------------LPV----LPPGLQELSVSDNQLAS----------LPA---LPSELCKLWAYNNQLT  174 (622)
T ss_dssp             ------------------------CCC----CCTTCCEEECCSSCCSC----------CCC---CCTTCCEEECCSSCCS
T ss_pred             ------------------------CCC----CCCCCCEEECcCCcCCC----------cCC---ccCCCCEEECCCCCCC
Confidence                                    332    12445555555555442          221   1234555555555554


Q ss_pred             ccCchhhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCcccccCCCCCCeeeccCccCCcccchh
Q 042359          294 SSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEI  373 (979)
Q Consensus       294 ~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  373 (979)
                      + +|   ..+++|++|++++|.+++ + +.   .+++|+.|++++| .+.. +|.   .+++|+.|++++|.+++ +|. 
T Consensus       175 ~-l~---~~~~~L~~L~Ls~N~l~~-l-~~---~~~~L~~L~L~~N-~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp~-  238 (622)
T 3g06_A          175 S-LP---MLPSGLQELSVSDNQLAS-L-PT---LPSELYKLWAYNN-RLTS-LPA---LPSGLKELIVSGNRLTS-LPV-  238 (622)
T ss_dssp             C-CC---CCCTTCCEEECCSSCCSC-C-CC---CCTTCCEEECCSS-CCSS-CCC---CCTTCCEEECCSSCCSC-CCC-
T ss_pred             C-Cc---ccCCCCcEEECCCCCCCC-C-CC---ccchhhEEECcCC-cccc-cCC---CCCCCCEEEccCCccCc-CCC-
Confidence            3 23   234455555555555542 2 11   1245555555555 4442 222   23556666666666554 221 


Q ss_pred             hhhccccccCCCcEEECcCCcCccccccccCCCCCCcEEeccCCcCcccCcccccCCCCCCEEEcCCCcCccccChhhhc
Q 042359          374 LDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFA  453 (979)
Q Consensus       374 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~l~~~~~~  453 (979)
                            .. .+|+.|++++|.++. +|.   .+++|+.|++++|.++ .+|..+.++++|+.|+|++|++.+..+. .+.
T Consensus       239 ------~l-~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~-~l~  305 (622)
T 3g06_A          239 ------LP-SELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ-ALR  305 (622)
T ss_dssp             ------CC-TTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH-HHH
T ss_pred             ------CC-CcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH-HHH
Confidence                  11 237777888777764 333   5678899999999888 5677888899999999999998866554 444


Q ss_pred             CC
Q 042359          454 NL  455 (979)
Q Consensus       454 ~l  455 (979)
                      .+
T Consensus       306 ~L  307 (622)
T 3g06_A          306 EI  307 (622)
T ss_dssp             HH
T ss_pred             hc
Confidence            43

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=3.7e-24  Score=228.97  Aligned_cols=212  Identities=21%  Similarity=0.203  Sum_probs=163.9

Q ss_pred             CCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceee
Q 042359          625 QNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLI  704 (979)
Q Consensus       625 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~  704 (979)
                      ++|++|++++|++++..+..|..+++|++|++++|++++..+..+.++++|++|++++|++++..|..+. .+++|+.|+
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~  106 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS-GLSSLQKLV  106 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT-TCTTCCEEE
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhc-CCccccEEE
Confidence            3577777777777765555677777777777777777766666777777777777777777755555554 677777777


Q ss_pred             ccCCcccCCCCccccCCCCccEEEccCCcccc-ccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCc
Q 042359          705 LRSNKFHGPLPTGLCDLAFLQILDIADNNLSG-AIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGE  783 (979)
Q Consensus       705 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  783 (979)
                      +++|.+.+..+..+..+++|+.|++++|++.+ .+|..+.++++|                                   
T Consensus       107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L-----------------------------------  151 (276)
T 2z62_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL-----------------------------------  151 (276)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC-----------------------------------
T ss_pred             CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCC-----------------------------------
Confidence            77777776666678888888888888888876 357777766655                                   


Q ss_pred             cchhhhhccceeEEecccCcccccccccccCCCCCC----EEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCC
Q 042359          784 MVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQ----SLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPES  859 (979)
Q Consensus       784 ~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~----~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~  859 (979)
                                 +.|+|++|++++..+..+..+++|+    .|++++|++++..+..+. ..+|+.|+|++|++++..+..
T Consensus       152 -----------~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~  219 (276)
T 2z62_A          152 -----------EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGI  219 (276)
T ss_dssp             -----------CEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTT
T ss_pred             -----------CEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhH
Confidence                       7888889988877777777777777    899999999966555554 458999999999999777777


Q ss_pred             CCCCCCCCEEEccCCcccccCCCCc
Q 042359          860 MSSLTFLNHLNLSNNNLTGKIPSST  884 (979)
Q Consensus       860 l~~l~~L~~L~ls~N~l~g~ip~~~  884 (979)
                      +..+++|++|++++|+++|..|...
T Consensus       220 ~~~l~~L~~L~l~~N~~~c~c~~l~  244 (276)
T 2z62_A          220 FDRLTSLQKIWLHTNPWDCSCPRID  244 (276)
T ss_dssp             TTTCCSCCEEECCSSCBCCCTTTTH
T ss_pred             hcccccccEEEccCCcccccCCchH
Confidence            8999999999999999999887643

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=3e-25  Score=256.50  Aligned_cols=236  Identities=21%  Similarity=0.181  Sum_probs=200.8

Q ss_pred             CCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCc
Q 042359          572 SSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSL  651 (979)
Q Consensus       572 ~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  651 (979)
                      +++|++|++++|.+++..|..+    +.+++|+.|+|++|.+++..|  +..+++|++|++++|.+++..+     .++|
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~----~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L  101 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADL----APFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSI  101 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGG----TTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTC
T ss_pred             CCCccEEEeeCCcCCCCCHHHH----hCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCc
Confidence            4578888888888887666544    558999999999999987766  8899999999999999985332     3899


Q ss_pred             cEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCcccc-CCCCccEEEcc
Q 042359          652 VWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLC-DLAFLQILDIA  730 (979)
Q Consensus       652 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls  730 (979)
                      ++|++++|.+++..+.   .+++|+.|++++|.+++..|..+. .+++|+.|++++|.+++..|..+. .+++|+.|+++
T Consensus       102 ~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls  177 (487)
T 3oja_A          102 ETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ  177 (487)
T ss_dssp             CEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred             CEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhc-CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecC
Confidence            9999999999987665   457899999999999987777776 799999999999999998888886 79999999999


Q ss_pred             CCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccc
Q 042359          731 DNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPL  810 (979)
Q Consensus       731 ~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~  810 (979)
                      +|.+++..+.  ..                                              ++.|+.|||++|++++ +|.
T Consensus       178 ~N~l~~~~~~--~~----------------------------------------------l~~L~~L~Ls~N~l~~-~~~  208 (487)
T 3oja_A          178 YNFIYDVKGQ--VV----------------------------------------------FAKLKTLDLSSNKLAF-MGP  208 (487)
T ss_dssp             TSCCCEEECC--CC----------------------------------------------CTTCCEEECCSSCCCE-ECG
T ss_pred             CCcccccccc--cc----------------------------------------------CCCCCEEECCCCCCCC-CCH
Confidence            9999865221  11                                              2345899999999996 555


Q ss_pred             cccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCccc-ccCCCCCCCCCCCCEEEcc
Q 042359          811 EVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLS-GEIPESMSSLTFLNHLNLS  872 (979)
Q Consensus       811 ~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~-~~ip~~l~~l~~L~~L~ls  872 (979)
                      .++.+++|+.|+|++|.+++ +|..++.+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus       209 ~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          209 EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            59999999999999999995 8889999999999999999999 7788889999888888886

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.90  E-value=5.7e-26  Score=272.06  Aligned_cols=108  Identities=13%  Similarity=0.142  Sum_probs=53.7

Q ss_pred             CCcccEEeccCccccccCCccccC-CCCCCEEEccCCcccccCCccc-CCCCCccEEEcCCccccccccc-cccCCCCCC
Q 042359          600 TKSLNALQLNDNYLNGELPDCWMS-YQNLKTLKLSNNKFTGNLPYSM-GSLTSLVWLHLGENRLSGNILV-SLKNCTALE  676 (979)
Q Consensus       600 ~~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~  676 (979)
                      +++|+.|++++ .+++..+..+.. +++|++|++++|.+++..+..+ ..+++|++|++++|.+++..+. ....+++|+
T Consensus       431 ~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~  509 (594)
T 2p1m_B          431 CKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMR  509 (594)
T ss_dssp             CTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSS
T ss_pred             CCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCC
Confidence            45566666654 444333333333 5566666666666554333333 3456666666666666443332 233456666


Q ss_pred             EEeccCCcccccCChhHHHhhhccceeeccCC
Q 042359          677 SLDVGENEFVGNIPTWIGERFSRMVVLILRSN  708 (979)
Q Consensus       677 ~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n  708 (979)
                      +|++++|+++..-...+...+++++...+..+
T Consensus       510 ~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~  541 (594)
T 2p1m_B          510 SLWMSSCSVSFGACKLLGQKMPKLNVEVIDER  541 (594)
T ss_dssp             EEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred             EEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence            66666666543322333233455544444433

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.90  E-value=5.7e-26  Score=272.05  Aligned_cols=124  Identities=15%  Similarity=0.119  Sum_probs=68.2

Q ss_pred             hhhcCCCCCCEEECCCCCCC-CCCCC-Cccccc----CCccccCCCCCCEEeccCCcCcccCchhhc-cCCCCCEEeccC
Q 042359          241 LATANFSSLTVLDLSDNQFD-KWFIP-SWVFGP----IPRGLQNLTSLRHLGLDSNHFNSSIPNWLY-RFIHLEYLSLSN  313 (979)
Q Consensus       241 ~~l~~l~~L~~L~Ls~n~l~-~~~~~-~~~~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~  313 (979)
                      ..+..+++|++|+++++... ++.+. ....+.    ++.....+++|++|++++|.+++..+..+. .+++|++|++++
T Consensus        60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~  139 (594)
T 2p1m_B           60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSS  139 (594)
T ss_dssp             HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEES
T ss_pred             HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCC
Confidence            45677888999999887532 11100 000000    011123566777777777777665555554 567777777777


Q ss_pred             C-cCccccCcccccccCccCEEecCCCCCCcccCccccc----CCCCCCeeeccCcc
Q 042359          314 N-SLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMA----SLCNLKSLNLRGVH  365 (979)
Q Consensus       314 n-~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~----~l~~L~~L~L~~n~  365 (979)
                      | .++....+..+.++++|++|++++| .+.+..+..+.    .+++|++|++++|.
T Consensus       140 ~~~~~~~~l~~~~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~~~L~~L~l~~~~  195 (594)
T 2p1m_B          140 CEGFSTDGLAAIAATCRNLKELDLRES-DVDDVSGHWLSHFPDTYTSLVSLNISCLA  195 (594)
T ss_dssp             CEEEEHHHHHHHHHHCTTCCEEECTTC-EEECCCGGGGGGSCTTCCCCCEEECTTCC
T ss_pred             cCCCCHHHHHHHHHhCCCCCEEeCcCC-ccCCcchHHHHHHhhcCCcCcEEEecccC
Confidence            7 3332111333446677777777777 45544333332    44566666666554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=1.4e-22  Score=215.62  Aligned_cols=214  Identities=25%  Similarity=0.312  Sum_probs=129.5

Q ss_pred             CCCccccceeccCCCCcEEEEECCCCCCCCchhhHHHhhcccccccccccccCCCCCCEEeCCCCCCCCCCccccccCCC
Q 042359           69 GDCCAWAGVFCDNITGHVLHLDLRNPFNYHKESEYEAIRRTALVGKINPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMG  148 (979)
Q Consensus        69 ~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~lp~~~~~l~  148 (979)
                      .++|.|.|+.|.- .+.++.+++++.               .++ .+|..+.  +++++|+|++|.++.+ .+..|+.++
T Consensus         2 ~~~C~~~~~~C~c-~~~~~~l~~~~~---------------~l~-~ip~~~~--~~l~~L~l~~n~l~~~-~~~~~~~l~   61 (270)
T 2o6q_A            2 EALCKKDGGVCSC-NNNKNSVDCSSK---------------KLT-AIPSNIP--ADTKKLDLQSNKLSSL-PSKAFHRLT   61 (270)
T ss_dssp             CCCBGGGTCSBEE-ETTTTEEECTTS---------------CCS-SCCSCCC--TTCSEEECCSSCCSCC-CTTSSSSCT
T ss_pred             CccCCCCCCCCEe-CCCCCEEEccCC---------------CCC-ccCCCCC--CCCCEEECcCCCCCee-CHHHhcCCC
Confidence            5799999999952 344567777762               444 3555443  5788888888888875 355788888


Q ss_pred             CCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccccCCCCCCEEEccCccCCCCchhhhhcCCCCCccEE
Q 042359          149 NLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVEL  228 (979)
Q Consensus       149 ~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L  228 (979)
                      +|++|++++|.++...+..|.++++|++|++++|.+..++..                           .+..+++|++|
T Consensus        62 ~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~---------------------------~~~~l~~L~~L  114 (270)
T 2o6q_A           62 KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIG---------------------------VFDQLVNLAEL  114 (270)
T ss_dssp             TCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTT---------------------------TTTTCSSCCEE
T ss_pred             CCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHh---------------------------HcccccCCCEE
Confidence            888888888888765555667778888888877776554431                           22344455555


Q ss_pred             EccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCccccCCCCCCEEeccCCcCcccCchhhccCCCCCE
Q 042359          229 RLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEY  308 (979)
Q Consensus       229 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  308 (979)
                      ++++|+++++.+..+..+++|++|++++|.++.         ..+..+..+++|++|++++|.+++..+..+.++++|++
T Consensus       115 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~---------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  185 (270)
T 2o6q_A          115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS---------LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKT  185 (270)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC---------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             ECCCCccCeeCHHHhCcCcCCCEEECCCCcCCc---------cCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCE
Confidence            555555555555555555555555555555542         12223455555555555555555444444555555555


Q ss_pred             EeccCCcCccccCcccccccCccCEEecCCC
Q 042359          309 LSLSNNSLQGTIDSEALGNLTSISWLDLSLN  339 (979)
Q Consensus       309 L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n  339 (979)
                      |++++|.++ .+++..+..+++|+.|++++|
T Consensus       186 L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N  215 (270)
T 2o6q_A          186 LKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN  215 (270)
T ss_dssp             EECCSSCCS-CCCTTTTTTCTTCCEEECCSS
T ss_pred             EECCCCcCC-cCCHHHhccccCCCEEEecCC
Confidence            555555554 232344455555555555555

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=9e-23  Score=217.16  Aligned_cols=205  Identities=20%  Similarity=0.238  Sum_probs=141.0

Q ss_pred             CCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeecc
Q 042359          627 LKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILR  706 (979)
Q Consensus       627 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~  706 (979)
                      .+.++++++.++ .+|..+.  +++++|++++|++++..+..|.++++|++|++++|.++ .+|..++..+++|++|+++
T Consensus        18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECC
T ss_pred             CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECC
Confidence            344444444444 3443332  34555555555555444444555555555555555554 3443333245556666666


Q ss_pred             CCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccch
Q 042359          707 SNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVD  786 (979)
Q Consensus       707 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  786 (979)
                      +|++++..+..+..+++|+.|++++|++++..|..+.+++.|                                      
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--------------------------------------  135 (270)
T 2o6q_A           94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL--------------------------------------  135 (270)
T ss_dssp             SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC--------------------------------------
T ss_pred             CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCC--------------------------------------
Confidence            666655555556777778888888888776666556555554                                      


Q ss_pred             hhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCC
Q 042359          787 YEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFL  866 (979)
Q Consensus       787 ~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L  866 (979)
                              +.|+|++|++++..+..++.+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..+..+..+++|
T Consensus       136 --------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  207 (270)
T 2o6q_A          136 --------TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL  207 (270)
T ss_dssp             --------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             --------CEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCC
Confidence                    788888888886666668899999999999999997777789999999999999999997777778999999


Q ss_pred             CEEEccCCcccccCC
Q 042359          867 NHLNLSNNNLTGKIP  881 (979)
Q Consensus       867 ~~L~ls~N~l~g~ip  881 (979)
                      +.|++++|++.+..+
T Consensus       208 ~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          208 KMLQLQENPWDCTCN  222 (270)
T ss_dssp             CEEECCSSCBCCSSS
T ss_pred             CEEEecCCCeeCCCc
Confidence            999999999987655

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=8.6e-23  Score=218.36  Aligned_cols=213  Identities=21%  Similarity=0.172  Sum_probs=161.8

Q ss_pred             CcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEec
Q 042359          601 KSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDV  680 (979)
Q Consensus       601 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  680 (979)
                      ++|++|++++|++.+..+..+.++++|++|++++|++++..+..|..+++|++|++++|++++..+..+.++++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            35666666666666555556777777777777777777666667777777777777777777766677777777888888


Q ss_pred             cCCcccccCChhHHHhhhccceeeccCCcccCC-CCccccCCCCccEEEccCCccccccCcchhhcccCccccccccccc
Q 042359          681 GENEFVGNIPTWIGERFSRMVVLILRSNKFHGP-LPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQ  759 (979)
Q Consensus       681 ~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~  759 (979)
                      ++|.+.+..+..+. .+++|+.|++++|++++. +|..+..+++|+.|++++|++++..+..+..++.+..+.       
T Consensus       108 ~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~-------  179 (276)
T 2z62_A          108 VETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN-------  179 (276)
T ss_dssp             TTSCCCCSTTCCCT-TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC-------
T ss_pred             CCCCccccCchhcc-cCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccc-------
Confidence            77777754443444 677888888888888763 688888999999999999999887777777776662110       


Q ss_pred             ccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCcc
Q 042359          760 QYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVM  839 (979)
Q Consensus       760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l  839 (979)
                                                         ..|++++|++++..+..+ ...+|+.|+|++|++++..+..++.+
T Consensus       180 -----------------------------------l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l  223 (276)
T 2z62_A          180 -----------------------------------LSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRL  223 (276)
T ss_dssp             -----------------------------------EEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTC
T ss_pred             -----------------------------------eeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhccc
Confidence                                               279999999996555544 45589999999999997777778999


Q ss_pred             CCCCEEECcCCcccccCC
Q 042359          840 RSLESIDFSANQLSGEIP  857 (979)
Q Consensus       840 ~~L~~LdLs~N~l~~~ip  857 (979)
                      ++|+.|+|++|++++..|
T Consensus       224 ~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          224 TSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             CSCCEEECCSSCBCCCTT
T ss_pred             ccccEEEccCCcccccCC
Confidence            999999999999997554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=1.7e-23  Score=222.88  Aligned_cols=223  Identities=18%  Similarity=0.196  Sum_probs=172.1

Q ss_pred             CcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEec
Q 042359          601 KSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDV  680 (979)
Q Consensus       601 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  680 (979)
                      ..+..+++..+.+.+..  ....+++|+.|++++|.++ .++ .+..+++|++|++++|++++.  ..+..+++|++|++
T Consensus        19 ~~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L   92 (272)
T 3rfs_A           19 AETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLIL   92 (272)
T ss_dssp             HHHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEEC
T ss_pred             HHHHHHHhcCccccccc--ccccccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEEC
Confidence            34445556666555432  2445677888888888776 333 467778888888888887752  36778888888888


Q ss_pred             cCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccc
Q 042359          681 GENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQ  760 (979)
Q Consensus       681 ~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~  760 (979)
                      ++|.+++..|..+. .+++|++|++++|++++..+..+..+++|+.|++++|++++..|..++.+++|            
T Consensus        93 ~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L------------  159 (272)
T 3rfs_A           93 TGNQLQSLPNGVFD-KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL------------  159 (272)
T ss_dssp             TTSCCCCCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC------------
T ss_pred             CCCccCccChhHhc-CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC------------
Confidence            88888754444444 67888888888888887777778888999999999998886666656665555            


Q ss_pred             cCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccC
Q 042359          761 YLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMR  840 (979)
Q Consensus       761 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~  840 (979)
                                                        +.|++++|++++..|..++.+++|+.|++++|++++..|..++.++
T Consensus       160 ----------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  205 (272)
T 3rfs_A          160 ----------------------------------TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT  205 (272)
T ss_dssp             ----------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred             ----------------------------------CEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCc
Confidence                                              7899999999977777789999999999999999988888889999


Q ss_pred             CCCEEECcCCcccccCCCCCCCCCCCCEEEccCCcccccCCCC
Q 042359          841 SLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSS  883 (979)
Q Consensus       841 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~  883 (979)
                      +|+.|+|++|.+.+..       +.|+.++++.|.++|.+|..
T Consensus       206 ~L~~L~l~~N~~~~~~-------~~l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          206 SLQYIWLHDNPWDCTC-------PGIRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             TCCEEECCSSCBCCCT-------TTTHHHHHHHHHTGGGBBCT
T ss_pred             CCCEEEccCCCccccC-------cHHHHHHHHHHhCCCcccCc
Confidence            9999999999988654       46888999999999999864

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=2.8e-22  Score=215.09  Aligned_cols=204  Identities=21%  Similarity=0.244  Sum_probs=140.9

Q ss_pred             cCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccc
Q 042359          622 MSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMV  701 (979)
Q Consensus       622 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~  701 (979)
                      .++++++++++++|.++ .+|..+.  ++++.|++++|.+++..+..+.++++|++|++++|.+++ +|.. . .+++|+
T Consensus         7 ~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~-~l~~L~   80 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-G-TLPVLG   80 (290)
T ss_dssp             ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-S-CCTTCC
T ss_pred             cccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-C-CCCcCC
Confidence            34445555555555554 3443332  455555555555555555555566666666666666553 2222 1 456666


Q ss_pred             eeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeec
Q 042359          702 VLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSK  781 (979)
Q Consensus       702 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  781 (979)
                      .|++++|+++ .+|..+..+++|+.|++++|++++..|..+.++++|                                 
T Consensus        81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L---------------------------------  126 (290)
T 1p9a_G           81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL---------------------------------  126 (290)
T ss_dssp             EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC---------------------------------
T ss_pred             EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC---------------------------------
Confidence            6666666666 566667777888888888888876656666665555                                 


Q ss_pred             CccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCC
Q 042359          782 GEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMS  861 (979)
Q Consensus       782 ~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~  861 (979)
                                   +.|+|++|++++..+..+..+++|+.|+|++|++++..+..|..+++|+.|+|++|+++ .+|..+.
T Consensus       127 -------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~  192 (290)
T 1p9a_G          127 -------------QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFF  192 (290)
T ss_dssp             -------------CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTT
T ss_pred             -------------CEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhc
Confidence                         77888888888766677788888999999999998655566788899999999999988 6788888


Q ss_pred             CCCCCCEEEccCCccccc
Q 042359          862 SLTFLNHLNLSNNNLTGK  879 (979)
Q Consensus       862 ~l~~L~~L~ls~N~l~g~  879 (979)
                      .+++|+.+++++|++.+.
T Consensus       193 ~~~~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          193 GSHLLPFAFLHGNPWLCN  210 (290)
T ss_dssp             TTCCCSEEECCSCCBCCS
T ss_pred             ccccCCeEEeCCCCccCc
Confidence            888899999999988764

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.89  E-value=8.2e-25  Score=246.36  Aligned_cols=240  Identities=15%  Similarity=0.249  Sum_probs=184.9

Q ss_pred             cccCCCcccEEeccCccccccC----CccccCCCCCCEEEccCC---cccccCCccc-------CCCCCccEEEcCCccc
Q 042359          596 RINETKSLNALQLNDNYLNGEL----PDCWMSYQNLKTLKLSNN---KFTGNLPYSM-------GSLTSLVWLHLGENRL  661 (979)
Q Consensus       596 ~l~~~~~L~~L~Ls~n~l~~~~----p~~~~~l~~L~~L~Ls~N---~l~~~~p~~l-------~~l~~L~~L~L~~n~l  661 (979)
                      .+..+++|+.|++++|.+.+..    +..+..+++|++|++++|   ++++.+|..+       ..+++|++|++++|.+
T Consensus        27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l  106 (386)
T 2ca6_A           27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF  106 (386)
T ss_dssp             HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred             HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence            3444677888888888777553    334667788888888875   4455556544       6788899999999998


Q ss_pred             cc----cccccccCCCCCCEEeccCCcccccCChhHHH---hh---------hccceeeccCCccc-CCCC---ccccCC
Q 042359          662 SG----NILVSLKNCTALESLDVGENEFVGNIPTWIGE---RF---------SRMVVLILRSNKFH-GPLP---TGLCDL  721 (979)
Q Consensus       662 ~~----~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~---~l---------~~L~~L~L~~n~l~-~~~p---~~l~~l  721 (979)
                      ++    .+|..+..+++|++|+|++|.+++..+..+..   .+         ++|+.|++++|+++ +.+|   ..+..+
T Consensus       107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~  186 (386)
T 2ca6_A          107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH  186 (386)
T ss_dssp             CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhC
Confidence            87    47778888899999999999887544444432   23         78999999999987 4444   467788


Q ss_pred             CCccEEEccCCcccc-----ccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeE
Q 042359          722 AFLQILDIADNNLSG-----AIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRM  796 (979)
Q Consensus       722 ~~L~~L~Ls~n~l~~-----~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  796 (979)
                      ++|+.|++++|+++.     .+|..+..++                                              .|+.
T Consensus       187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~----------------------------------------------~L~~  220 (386)
T 2ca6_A          187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ----------------------------------------------ELKV  220 (386)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHHHTTGGGCT----------------------------------------------TCCE
T ss_pred             CCcCEEECcCCCCCHhHHHHHHHHHhhcCC----------------------------------------------CccE
Confidence            899999999998862     2232344333                                              4489


Q ss_pred             EecccCccc----ccccccccCCCCCCEEeCCCCcceec----cCCCC--CccCCCCEEECcCCcccc----cCCCCC-C
Q 042359          797 IDISRNNFS----GKIPLEVTNLKALQSLNFSYNSFTGR----IPESI--GVMRSLESIDFSANQLSG----EIPESM-S  861 (979)
Q Consensus       797 LdLs~N~l~----~~ip~~l~~l~~L~~L~Ls~N~l~~~----ip~~~--~~l~~L~~LdLs~N~l~~----~ip~~l-~  861 (979)
                      |+|++|.++    +.+|..+..+++|+.|+|++|++++.    +|..+  +.+++|+.|+|++|++++    .+|..+ .
T Consensus       221 L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~  300 (386)
T 2ca6_A          221 LDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDE  300 (386)
T ss_dssp             EECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHH
T ss_pred             EECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHh
Confidence            999999996    67899999999999999999999876    56666  448999999999999998    588887 6


Q ss_pred             CCCCCCEEEccCCcccccCC
Q 042359          862 SLTFLNHLNLSNNNLTGKIP  881 (979)
Q Consensus       862 ~l~~L~~L~ls~N~l~g~ip  881 (979)
                      ++++|++|++++|++++..|
T Consensus       301 ~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          301 KMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HCTTCCEEECTTSBSCTTSH
T ss_pred             cCCCceEEEccCCcCCcchh
Confidence            68999999999999998765

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=1.1e-22  Score=216.79  Aligned_cols=207  Identities=19%  Similarity=0.219  Sum_probs=172.3

Q ss_pred             CCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEe
Q 042359          600 TKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLD  679 (979)
Q Consensus       600 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  679 (979)
                      +++|+.|++++|.+.. + ..+..+++|++|++++|++++ + ..+..+++|++|++++|.+++..+..+.++++|++|+
T Consensus        40 l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  115 (272)
T 3rfs_A           40 LNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV  115 (272)
T ss_dssp             HTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             ccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence            6778888888887763 2 357778888888888888875 3 3678888899999999988877777788889999999


Q ss_pred             ccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCccccccccccc
Q 042359          680 VGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQ  759 (979)
Q Consensus       680 L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~  759 (979)
                      +++|++++..|..+. .+++|+.|++++|++++..+..+..+++|+.|++++|++++..|..++.+++|           
T Consensus       116 L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-----------  183 (272)
T 3rfs_A          116 LVENQLQSLPDGVFD-KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL-----------  183 (272)
T ss_dssp             CTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-----------
T ss_pred             CCCCcCCccCHHHhc-cCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccC-----------
Confidence            999998854444444 68899999999999987777778899999999999999987766666666655           


Q ss_pred             ccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCcc
Q 042359          760 QYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVM  839 (979)
Q Consensus       760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l  839 (979)
                                                         +.|+|++|++++..|..++.+++|+.|+|++|.+.+..       
T Consensus       184 -----------------------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~-------  221 (272)
T 3rfs_A          184 -----------------------------------KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC-------  221 (272)
T ss_dssp             -----------------------------------CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT-------
T ss_pred             -----------------------------------CEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccC-------
Confidence                                               88999999999888888999999999999999998654       


Q ss_pred             CCCCEEECcCCcccccCCCCCCCCC
Q 042359          840 RSLESIDFSANQLSGEIPESMSSLT  864 (979)
Q Consensus       840 ~~L~~LdLs~N~l~~~ip~~l~~l~  864 (979)
                      ++|+.|+++.|+++|.+|.+++.+.
T Consensus       222 ~~l~~l~~~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          222 PGIRYLSEWINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             TTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred             cHHHHHHHHHHhCCCcccCcccccC
Confidence            4689999999999999999988765

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=1.2e-23  Score=234.32  Aligned_cols=256  Identities=16%  Similarity=0.176  Sum_probs=149.7

Q ss_pred             EEcccccccccCChhhhhcccCCCcccEEeccCccccccCC----ccccCCC-CCCEEEccCCcccccCCcccCCC----
Q 042359          578 LDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELP----DCWMSYQ-NLKTLKLSNNKFTGNLPYSMGSL----  648 (979)
Q Consensus       578 L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p----~~~~~l~-~L~~L~Ls~N~l~~~~p~~l~~l----  648 (979)
                      +++++|.+++.+|....    ..++|++|++++|.+++..+    ..+..++ +|++|++++|++++..+..+..+    
T Consensus         3 ~~ls~n~~~~~~~~~~~----~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~   78 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTS----IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI   78 (362)
T ss_dssp             EECCCCTTCCHHHHHHT----SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTS
T ss_pred             cccccccchHHHHHHHh----CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhcc
Confidence            34555555554444332    13446666666666554444    4455555 56666666666665544444443    


Q ss_pred             -CCccEEEcCCcccccccccc----ccCC-CCCCEEeccCCcccccCChhHHHh----hhccceeeccCCcccCCC----
Q 042359          649 -TSLVWLHLGENRLSGNILVS----LKNC-TALESLDVGENEFVGNIPTWIGER----FSRMVVLILRSNKFHGPL----  714 (979)
Q Consensus       649 -~~L~~L~L~~n~l~~~~p~~----l~~l-~~L~~L~L~~N~l~~~ip~~~~~~----l~~L~~L~L~~n~l~~~~----  714 (979)
                       ++|++|++++|++++..+..    +..+ ++|++|++++|++++..+..+...    .++|+.|++++|++++..    
T Consensus        79 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l  158 (362)
T 3goz_A           79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL  158 (362)
T ss_dssp             CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred             CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence             66666666666666554443    2333 566666666666665444443322    246667777777666433    


Q ss_pred             CccccCCC-CccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhc-c
Q 042359          715 PTGLCDLA-FLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDIL-N  792 (979)
Q Consensus       715 p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  792 (979)
                      +..+..++ +|+.|++++|++++..+..+...-                                          ... +
T Consensus       159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l------------------------------------------~~~~~  196 (362)
T 3goz_A          159 IQILAAIPANVNSLNLRGNNLASKNCAELAKFL------------------------------------------ASIPA  196 (362)
T ss_dssp             HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH------------------------------------------HTSCT
T ss_pred             HHHHhcCCccccEeeecCCCCchhhHHHHHHHH------------------------------------------HhCCC
Confidence            23334444 777777777777665554443210                                          001 2


Q ss_pred             ceeEEecccCccccc----ccccccC-CCCCCEEeCCCCcceeccC----CCCCccCCCCEEECcCCccccc-------C
Q 042359          793 LVRMIDISRNNFSGK----IPLEVTN-LKALQSLNFSYNSFTGRIP----ESIGVMRSLESIDFSANQLSGE-------I  856 (979)
Q Consensus       793 ~L~~LdLs~N~l~~~----ip~~l~~-l~~L~~L~Ls~N~l~~~ip----~~~~~l~~L~~LdLs~N~l~~~-------i  856 (979)
                      .|+.|||++|++++.    ++..+.. .++|+.|||++|++++..+    ..+..+++|+.|+|++|.+.+.       +
T Consensus       197 ~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l  276 (362)
T 3goz_A          197 SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKAL  276 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHH
T ss_pred             CCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHH
Confidence            347778888877752    4555555 3478888888888875433    3456667788888888874432       3


Q ss_pred             CCCCCCCCCCCEEEccCCccccc
Q 042359          857 PESMSSLTFLNHLNLSNNNLTGK  879 (979)
Q Consensus       857 p~~l~~l~~L~~L~ls~N~l~g~  879 (979)
                      +..+..+++|+.||+++|++.+.
T Consensus       277 ~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          277 GAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HHHhccCCceEEEecCCCcCCCc
Confidence            44667777888888888887755

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.87  E-value=1.1e-21  Score=210.37  Aligned_cols=204  Identities=20%  Similarity=0.179  Sum_probs=173.4

Q ss_pred             cCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCE
Q 042359          598 NETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALES  677 (979)
Q Consensus       598 ~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  677 (979)
                      +.+++++++++++|.++ .+|..+.  ++++.|++++|++++..|..|..+++|++|++++|.+++..+  ...+++|++
T Consensus         7 ~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~   81 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGT   81 (290)
T ss_dssp             ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCE
T ss_pred             cccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCE
Confidence            45778888888888887 5665554  688999999999988778889999999999999999986433  278899999


Q ss_pred             EeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCccccccccc
Q 042359          678 LDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRS  757 (979)
Q Consensus       678 L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~  757 (979)
                      |++++|+++ .+|..+. .+++|+.|++++|++++..|..|..+++|+.|++++|++++..|..+..++.|         
T Consensus        82 L~Ls~N~l~-~l~~~~~-~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L---------  150 (290)
T 1p9a_G           82 LDLSHNQLQ-SLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL---------  150 (290)
T ss_dssp             EECCSSCCS-SCCCCTT-TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC---------
T ss_pred             EECCCCcCC-cCchhhc-cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCC---------
Confidence            999999997 7887665 78999999999999998777889999999999999999986666556655555         


Q ss_pred             ccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCC
Q 042359          758 VQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIG  837 (979)
Q Consensus       758 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~  837 (979)
                                                           +.|+|++|++++..+..+..+++|+.|+|++|+++ .+|..+.
T Consensus       151 -------------------------------------~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~  192 (290)
T 1p9a_G          151 -------------------------------------EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFF  192 (290)
T ss_dssp             -------------------------------------CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTT
T ss_pred             -------------------------------------CEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhc
Confidence                                                 89999999999666667789999999999999999 8899999


Q ss_pred             ccCCCCEEECcCCccccc
Q 042359          838 VMRSLESIDFSANQLSGE  855 (979)
Q Consensus       838 ~l~~L~~LdLs~N~l~~~  855 (979)
                      .+.+|+.|+|++|.+...
T Consensus       193 ~~~~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          193 GSHLLPFAFLHGNPWLCN  210 (290)
T ss_dssp             TTCCCSEEECCSCCBCCS
T ss_pred             ccccCCeEEeCCCCccCc
Confidence            999999999999998753

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=1e-22  Score=221.56  Aligned_cols=231  Identities=18%  Similarity=0.225  Sum_probs=157.5

Q ss_pred             CCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccc--cCCCCCCEEEccCCcccccCC----cccCC
Q 042359          574 NLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCW--MSYQNLKTLKLSNNKFTGNLP----YSMGS  647 (979)
Q Consensus       574 ~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~p----~~l~~  647 (979)
                      .++.+.+.++.+....-..+.. ...+++|++|++++|.+.+..|..+  ..+++|++|++++|++++..+    ..+..
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALR-VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHH-HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             ceeEEEEeCCcCCHHHHHHHHH-hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            3556666665554221111111 1123568888888888887777776  778888888888888876544    23446


Q ss_pred             CCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEE
Q 042359          648 LTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQIL  727 (979)
Q Consensus       648 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  727 (979)
                      +++|++|++++|++++..+..+.++++|++|++++|++.+...  +                   ..+..+..+++|++|
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--~-------------------~~~~~~~~l~~L~~L  202 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERG--L-------------------MAALCPHKFPAIQNL  202 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHH--H-------------------HTTSCTTSSCCCCSC
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchh--h-------------------hHHHhhhcCCCCCEE
Confidence            7788888888888877777777777888888888777653200  0                   001122455667777


Q ss_pred             EccCCccccccCcc----hhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCc
Q 042359          728 DIADNNLSGAIPNC----INNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNN  803 (979)
Q Consensus       728 ~Ls~n~l~~~~p~~----~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~  803 (979)
                      ++++|+++ .+|..    ++++                                              +.|+.|||++|+
T Consensus       203 ~Ls~N~l~-~l~~~~~~l~~~l----------------------------------------------~~L~~L~Ls~N~  235 (310)
T 4glp_A          203 ALRNTGME-TPTGVCAALAAAG----------------------------------------------VQPHSLDLSHNS  235 (310)
T ss_dssp             BCCSSCCC-CHHHHHHHHHHHT----------------------------------------------CCCSSEECTTSC
T ss_pred             ECCCCCCC-chHHHHHHHHhcC----------------------------------------------CCCCEEECCCCC
Confidence            77777764 22221    2222                                              334788888888


Q ss_pred             ccccccccccCC---CCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCcccc
Q 042359          804 FSGKIPLEVTNL---KALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTG  878 (979)
Q Consensus       804 l~~~ip~~l~~l---~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  878 (979)
                      +++.+|..++.+   ++|++|+|++|+++ .+|..+.  ++|+.|||++|++++. |. +..+++|+.|++++|+++.
T Consensus       236 l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          236 LRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             CCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            888778877777   58999999999999 7888775  7999999999999864 43 6778899999999998874

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=3.2e-23  Score=230.77  Aligned_cols=244  Identities=20%  Similarity=0.218  Sum_probs=178.0

Q ss_pred             CCCCcEEEcccccccccCChhhhhcccCCC-cccEEeccCccccccCCccccCC-----CCCCEEEccCCcccccCCccc
Q 042359          572 SSNLVFLDLSNNLFSGSISPFLCYRINETK-SLNALQLNDNYLNGELPDCWMSY-----QNLKTLKLSNNKFTGNLPYSM  645 (979)
Q Consensus       572 ~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~-~L~~L~Ls~n~l~~~~p~~~~~l-----~~L~~L~Ls~N~l~~~~p~~l  645 (979)
                      +.+|++|++++|.+++..+..++..+..++ +|++|++++|.+++..+..+..+     ++|++|++++|++++..+..+
T Consensus        21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l  100 (362)
T 3goz_A           21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL  100 (362)
T ss_dssp             CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred             CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence            355888888888888777666666666677 88888888888887766666654     889999999998886665533


Q ss_pred             ----CCC-CCccEEEcCCccccccccccc----cC-CCCCCEEeccCCcccccCChhHHH---hh-hccceeeccCCccc
Q 042359          646 ----GSL-TSLVWLHLGENRLSGNILVSL----KN-CTALESLDVGENEFVGNIPTWIGE---RF-SRMVVLILRSNKFH  711 (979)
Q Consensus       646 ----~~l-~~L~~L~L~~n~l~~~~p~~l----~~-l~~L~~L~L~~N~l~~~ip~~~~~---~l-~~L~~L~L~~n~l~  711 (979)
                          ..+ ++|++|++++|++++..+..+    .. .++|++|++++|.+++..+..+..   .. ++|+.|++++|+++
T Consensus       101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~  180 (362)
T 3goz_A          101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA  180 (362)
T ss_dssp             HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence                334 789999999999887666543    33 468999999999888644433322   23 38999999999998


Q ss_pred             CCCCcccc----CC-CCccEEEccCCccccc----cCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecC
Q 042359          712 GPLPTGLC----DL-AFLQILDIADNNLSGA----IPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKG  782 (979)
Q Consensus       712 ~~~p~~l~----~l-~~L~~L~Ls~n~l~~~----~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  782 (979)
                      +..+..+.    .+ ++|+.|++++|++++.    ++..+..                                      
T Consensus       181 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~--------------------------------------  222 (362)
T 3goz_A          181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS--------------------------------------  222 (362)
T ss_dssp             GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH--------------------------------------
T ss_pred             hhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc--------------------------------------
Confidence            77665443    44 5899999999998753    2222221                                      


Q ss_pred             ccchhhhhccceeEEecccCccccccc----ccccCCCCCCEEeCCCCccee-------ccCCCCCccCCCCEEECcCCc
Q 042359          783 EMVDYEDILNLVRMIDISRNNFSGKIP----LEVTNLKALQSLNFSYNSFTG-------RIPESIGVMRSLESIDFSANQ  851 (979)
Q Consensus       783 ~~~~~~~~~~~L~~LdLs~N~l~~~ip----~~l~~l~~L~~L~Ls~N~l~~-------~ip~~~~~l~~L~~LdLs~N~  851 (979)
                             ..+.|+.|||++|++++..+    ..+..+++|+.|+|++|.+.+       .++..+..+++|+.||+++|+
T Consensus       223 -------~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          223 -------IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             -------SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred             -------CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence                   12346899999999987554    345778899999999998442       355678889999999999999


Q ss_pred             ccccCCCCC
Q 042359          852 LSGEIPESM  860 (979)
Q Consensus       852 l~~~ip~~l  860 (979)
                      +.+..|..+
T Consensus       296 l~~~~~~~~  304 (362)
T 3goz_A          296 IHPSHSIPI  304 (362)
T ss_dssp             CCGGGCHHH
T ss_pred             CCCcchHHH
Confidence            987755443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=7.3e-22  Score=207.65  Aligned_cols=212  Identities=18%  Similarity=0.211  Sum_probs=143.2

Q ss_pred             CCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeec
Q 042359          626 NLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLIL  705 (979)
Q Consensus       626 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L  705 (979)
                      +.++++++++.++ .+|..+.  ++++.|++++|++++..+..+.++++|++|++++|.++                   
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-------------------   72 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-------------------   72 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-------------------
T ss_pred             CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-------------------
Confidence            4566777777776 5565443  46666666666666655555665566655555555554                   


Q ss_pred             cCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccc
Q 042359          706 RSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMV  785 (979)
Q Consensus       706 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  785 (979)
                            +..|..+..+++|+.|++++|++++..|..+..++.|                                     
T Consensus        73 ------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-------------------------------------  109 (251)
T 3m19_A           73 ------TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQL-------------------------------------  109 (251)
T ss_dssp             ------CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-------------------------------------
T ss_pred             ------ccCHhHhccCCcCCEEECCCCcccccChhHhcccCCC-------------------------------------
Confidence                  4444455666677777777777765555555554444                                     


Q ss_pred             hhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCC
Q 042359          786 DYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTF  865 (979)
Q Consensus       786 ~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~  865 (979)
                               +.|+|++|++++..+..++.+++|+.|+|++|++++..|..|+.+++|+.|||++|++++..|..+..+++
T Consensus       110 ---------~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  180 (251)
T 3m19_A          110 ---------DKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGK  180 (251)
T ss_dssp             ---------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred             ---------CEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCC
Confidence                     67788888888666666788999999999999999777778999999999999999999888888999999


Q ss_pred             CCEEEccCCcccccCCCCccCC------CccccccCCCCCCCCCCCCCCCCC
Q 042359          866 LNHLNLSNNNLTGKIPSSTQLQ------SFDVSSFAGNDLCGAPLPKNCTEN  911 (979)
Q Consensus       866 L~~L~ls~N~l~g~ip~~~~~~------~~~~~~~~~n~lcg~~~~~~c~~~  911 (979)
                      |++|++++|++++..+....+.      ........++.+|+.|....|...
T Consensus       181 L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~  232 (251)
T 3m19_A          181 LQTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQNLHESPDGVTCSDG  232 (251)
T ss_dssp             CCEEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC-------CCGGGCBBTTS
T ss_pred             CCEEEeeCCceeCCccccHHHHHHHHhcccceeeccCcccccCCCcCccCCC
Confidence            9999999999998744322111      112223456677877777778644

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=1.2e-22  Score=224.32  Aligned_cols=251  Identities=18%  Similarity=0.222  Sum_probs=194.9

Q ss_pred             CCCcEEEcccccccccCChhhhhcccCC--CcccEEeccCccccccCCccccCCCCCCEEEccCCccccc-CCcccCCCC
Q 042359          573 SNLVFLDLSNNLFSGSISPFLCYRINET--KSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGN-LPYSMGSLT  649 (979)
Q Consensus       573 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~  649 (979)
                      ..++.+++++|.+..   ..+.    .+  +.++.|++++|.+.+..+. +..+++|++|++++|.+++. +|..+..++
T Consensus        47 ~~~~~l~l~~~~~~~---~~~~----~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~  118 (336)
T 2ast_B           47 SLWQTLDLTGKNLHP---DVTG----RLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCS  118 (336)
T ss_dssp             TTSSEEECTTCBCCH---HHHH----HHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBC
T ss_pred             hhheeeccccccCCH---HHHH----hhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCC
Confidence            346788888887662   2222    23  7899999999999877665 55789999999999998866 777888999


Q ss_pred             CccEEEcCCccccccccccccCCCCCCEEeccCC-ccccc-CChhHHHhhhccceeeccCC-cccCC-CCccccCCC-Cc
Q 042359          650 SLVWLHLGENRLSGNILVSLKNCTALESLDVGEN-EFVGN-IPTWIGERFSRMVVLILRSN-KFHGP-LPTGLCDLA-FL  724 (979)
Q Consensus       650 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N-~l~~~-ip~~~~~~l~~L~~L~L~~n-~l~~~-~p~~l~~l~-~L  724 (979)
                      +|++|++++|.+++..+..+..+++|++|++++| .+++. +|..+. .+++|+.|++++| .+++. ++..+..++ +|
T Consensus       119 ~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L  197 (336)
T 2ast_B          119 KLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS-SCSRLDELNLSWCFDFTEKHVQVAVAHVSETI  197 (336)
T ss_dssp             CCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH-HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred             CCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh-cCCCCCEEcCCCCCCcChHHHHHHHHhcccCC
Confidence            9999999999999888888999999999999999 67753 555555 7899999999999 88864 567788888 99


Q ss_pred             cEEEccCC--ccc-cccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEeccc
Q 042359          725 QILDIADN--NLS-GAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISR  801 (979)
Q Consensus       725 ~~L~Ls~n--~l~-~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~  801 (979)
                      +.|++++|  .++ +.+|..+.++++|                                              +.|+|++
T Consensus       198 ~~L~l~~~~~~~~~~~l~~~~~~~~~L----------------------------------------------~~L~l~~  231 (336)
T 2ast_B          198 TQLNLSGYRKNLQKSDLSTLVRRCPNL----------------------------------------------VHLDLSD  231 (336)
T ss_dssp             CEEECCSCGGGSCHHHHHHHHHHCTTC----------------------------------------------SEEECTT
T ss_pred             CEEEeCCCcccCCHHHHHHHHhhCCCC----------------------------------------------CEEeCCC
Confidence            99999999  454 4455555554444                                              8899999


Q ss_pred             Cc-ccccccccccCCCCCCEEeCCCCc-ceeccCCCCCccCCCCEEECcCCcccccCCCCCCCC-CCCCEEEccCCcccc
Q 042359          802 NN-FSGKIPLEVTNLKALQSLNFSYNS-FTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSL-TFLNHLNLSNNNLTG  878 (979)
Q Consensus       802 N~-l~~~ip~~l~~l~~L~~L~Ls~N~-l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l-~~L~~L~ls~N~l~g  878 (979)
                      |. +++..+..++.+++|+.|++++|. ++......++++++|+.|++++| ++.   +.+..+ ..+..|++++|+++|
T Consensus       232 ~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~  307 (336)
T 2ast_B          232 SVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTT  307 (336)
T ss_dssp             CTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCC
T ss_pred             CCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCcc
Confidence            99 777888889999999999999995 33222235788899999999998 332   233444 346777889999998


Q ss_pred             cCCC
Q 042359          879 KIPS  882 (979)
Q Consensus       879 ~ip~  882 (979)
                      ..|.
T Consensus       308 ~~~~  311 (336)
T 2ast_B          308 IARP  311 (336)
T ss_dssp             TTCS
T ss_pred             ccCC
Confidence            8775

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.86  E-value=2.8e-23  Score=233.83  Aligned_cols=239  Identities=21%  Similarity=0.290  Sum_probs=192.3

Q ss_pred             CCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCc---cccccCCccc-------cCCCCCCEEEccCCcccc--
Q 042359          572 SSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDN---YLNGELPDCW-------MSYQNLKTLKLSNNKFTG--  639 (979)
Q Consensus       572 ~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n---~l~~~~p~~~-------~~l~~L~~L~Ls~N~l~~--  639 (979)
                      .++|++|++++|.+.+..+..++..+..+++|+.|+|++|   ++.+.+|..+       ..+++|++|++++|.+++  
T Consensus        31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  110 (386)
T 2ca6_A           31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  110 (386)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence            3567888888888877766666666777899999999886   4555666555       678999999999999986  


Q ss_pred             --cCCcccCCCCCccEEEcCCccccccccccc----cCC---------CCCCEEeccCCccc-ccCC---hhHHHhhhcc
Q 042359          640 --NLPYSMGSLTSLVWLHLGENRLSGNILVSL----KNC---------TALESLDVGENEFV-GNIP---TWIGERFSRM  700 (979)
Q Consensus       640 --~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l----~~l---------~~L~~L~L~~N~l~-~~ip---~~~~~~l~~L  700 (979)
                        .+|..+..+++|++|+|++|.+++..+..+    ..+         ++|++|++++|+++ +.+|   ..+. .+++|
T Consensus       111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L  189 (386)
T 2ca6_A          111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ-SHRLL  189 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH-HCTTC
T ss_pred             HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH-hCCCc
Confidence              467788889999999999999975544433    334         89999999999997 4455   2343 68899


Q ss_pred             ceeeccCCcccC-----CCCccccCCCCccEEEccCCccc----cccCcchhhcccCcccccccccccccCCCCccccee
Q 042359          701 VVLILRSNKFHG-----PLPTGLCDLAFLQILDIADNNLS----GAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVI  771 (979)
Q Consensus       701 ~~L~L~~n~l~~-----~~p~~l~~l~~L~~L~Ls~n~l~----~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  771 (979)
                      +.|++++|+++.     ..|..+..+++|+.|++++|.++    +.+|..+..++.|                       
T Consensus       190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L-----------------------  246 (386)
T 2ca6_A          190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL-----------------------  246 (386)
T ss_dssp             CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTC-----------------------
T ss_pred             CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCc-----------------------
Confidence            999999999873     34558889999999999999996    5667666655554                       


Q ss_pred             eeeeeEEeecCccchhhhhccceeEEecccCccccc----ccccc--cCCCCCCEEeCCCCccee----ccCCCC-CccC
Q 042359          772 LVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGK----IPLEV--TNLKALQSLNFSYNSFTG----RIPESI-GVMR  840 (979)
Q Consensus       772 ~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~----ip~~l--~~l~~L~~L~Ls~N~l~~----~ip~~~-~~l~  840 (979)
                                             +.|+|++|.+++.    +|..+  +.+++|+.|+|++|.+++    .+|..+ .+++
T Consensus       247 -----------------------~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~  303 (386)
T 2ca6_A          247 -----------------------RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP  303 (386)
T ss_dssp             -----------------------CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCT
T ss_pred             -----------------------CEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCC
Confidence                                   8999999999876    67777  449999999999999998    588887 6689


Q ss_pred             CCCEEECcCCcccccCC
Q 042359          841 SLESIDFSANQLSGEIP  857 (979)
Q Consensus       841 ~L~~LdLs~N~l~~~ip  857 (979)
                      +|++|+|++|++++..|
T Consensus       304 ~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          304 DLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             TCCEEECTTSBSCTTSH
T ss_pred             CceEEEccCCcCCcchh
Confidence            99999999999998764

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=5.4e-21  Score=199.51  Aligned_cols=196  Identities=17%  Similarity=0.214  Sum_probs=105.0

Q ss_pred             CCCEEEccCCcccccCCcccCCCCCccEEEcCCcc-ccccccccccCCCCCCEEeccC-CcccccCChhHHHhhhcccee
Q 042359          626 NLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENR-LSGNILVSLKNCTALESLDVGE-NEFVGNIPTWIGERFSRMVVL  703 (979)
Q Consensus       626 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~-N~l~~~ip~~~~~~l~~L~~L  703 (979)
                      +|++|++++|++++..+..|..+++|++|++++|+ +++..+..|.++++|++|++++ |++++..+..+. .+++|+.|
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~-~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALK-ELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEE-CCTTCCEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhC-CCCCCCEE
Confidence            45555555555554444455555555555555554 4443344555555555555555 555422222222 34455555


Q ss_pred             eccCCcccCCCCccccCCCCcc---EEEccCC-ccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEe
Q 042359          704 ILRSNKFHGPLPTGLCDLAFLQ---ILDIADN-NLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVV  779 (979)
Q Consensus       704 ~L~~n~l~~~~p~~l~~l~~L~---~L~Ls~n-~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  779 (979)
                      ++++|++++ +|. +..+++|+   .|++++| ++++..+..+.+++.|                               
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L-------------------------------  157 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE-------------------------------  157 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSS-------------------------------
T ss_pred             eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcc-------------------------------
Confidence            555555543 333 44555555   6666666 5554444444444443                               


Q ss_pred             ecCccchhhhhcccee-EEecccCcccccccccccCCCCCCEEeCCCCc-ceeccCCCCCcc-CCCCEEECcCCcccccC
Q 042359          780 SKGEMVDYEDILNLVR-MIDISRNNFSGKIPLEVTNLKALQSLNFSYNS-FTGRIPESIGVM-RSLESIDFSANQLSGEI  856 (979)
Q Consensus       780 ~~~~~~~~~~~~~~L~-~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~-l~~~ip~~~~~l-~~L~~LdLs~N~l~~~i  856 (979)
                                     + .|++++|+++ .+|......++|+.|+|++|+ +++..+..|+.+ ++|+.||+++|++++ +
T Consensus       158 ---------------~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l  220 (239)
T 2xwt_C          158 ---------------TLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-L  220 (239)
T ss_dssp             ---------------EEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-C
T ss_pred             ---------------eeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-C
Confidence                           5 5666666666 444433333666666776663 665555566666 667777777776663 3


Q ss_pred             CCCCCCCCCCCEEEccCC
Q 042359          857 PESMSSLTFLNHLNLSNN  874 (979)
Q Consensus       857 p~~l~~l~~L~~L~ls~N  874 (979)
                      |..  .+++|+.|+++++
T Consensus       221 ~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          221 PSK--GLEHLKELIARNT  236 (239)
T ss_dssp             CCT--TCTTCSEEECTTC
T ss_pred             Chh--HhccCceeeccCc
Confidence            332  4556666666654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.84  E-value=3.3e-22  Score=220.71  Aligned_cols=234  Identities=14%  Similarity=0.222  Sum_probs=178.7

Q ss_pred             CCCcEEEcccccccccCChhhhhcccCCCcccEEeccCcccccc-CCccccCCCCCCEEEccCCcccccCCcccCCCCCc
Q 042359          573 SNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGE-LPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSL  651 (979)
Q Consensus       573 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  651 (979)
                      .+++.+++++|.+.+..+.     +..+++|++|++++|.+.+. +|..+..+++|++|++++|.+++..+..+..+++|
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-----~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L  144 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-----HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNL  144 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-----CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTC
T ss_pred             ccceEEEcCCccccccchh-----hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCC
Confidence            4667777777777666554     23478888888888888765 77778888899999999998887778888888999


Q ss_pred             cEEEcCCc-ccccc-ccccccCCCCCCEEeccCC-ccccc-CChhHHHhhh-ccceeeccCC--ccc-CCCCccccCCCC
Q 042359          652 VWLHLGEN-RLSGN-ILVSLKNCTALESLDVGEN-EFVGN-IPTWIGERFS-RMVVLILRSN--KFH-GPLPTGLCDLAF  723 (979)
Q Consensus       652 ~~L~L~~n-~l~~~-~p~~l~~l~~L~~L~L~~N-~l~~~-ip~~~~~~l~-~L~~L~L~~n--~l~-~~~p~~l~~l~~  723 (979)
                      ++|++++| .+++. ++..+.++++|++|++++| .+++. ++..+. .++ +|+.|++++|  .++ +.+|..+..+++
T Consensus       145 ~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~  223 (336)
T 2ast_B          145 VRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA-HVSETITQLNLSGYRKNLQKSDLSTLVRRCPN  223 (336)
T ss_dssp             SEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH-HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTT
T ss_pred             CEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH-hcccCCCEEEeCCCcccCCHHHHHHHHhhCCC
Confidence            99999998 67753 6666888899999999999 88754 555555 688 9999999998  455 456777778899


Q ss_pred             ccEEEccCCc-cccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccC
Q 042359          724 LQILDIADNN-LSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRN  802 (979)
Q Consensus       724 L~~L~Ls~n~-l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N  802 (979)
                      |+.|++++|. +++..+..+.+++.|                                              +.|+|++|
T Consensus       224 L~~L~l~~~~~l~~~~~~~l~~l~~L----------------------------------------------~~L~l~~~  257 (336)
T 2ast_B          224 LVHLDLSDSVMLKNDCFQEFFQLNYL----------------------------------------------QHLSLSRC  257 (336)
T ss_dssp             CSEEECTTCTTCCGGGGGGGGGCTTC----------------------------------------------CEEECTTC
T ss_pred             CCEEeCCCCCcCCHHHHHHHhCCCCC----------------------------------------------CEeeCCCC
Confidence            9999999998 676666666655554                                              88999998


Q ss_pred             c-ccccccccccCCCCCCEEeCCCCcceeccCCCCCcc-CCCCEEECcCCcccccCCCCCCC
Q 042359          803 N-FSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVM-RSLESIDFSANQLSGEIPESMSS  862 (979)
Q Consensus       803 ~-l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l-~~L~~LdLs~N~l~~~ip~~l~~  862 (979)
                      . ++......++++++|+.|++++| ++   .+.+..+ .+++.|++++|++++..|..++.
T Consensus       258 ~~~~~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          258 YDIIPETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINCSHFTTIARPTIGN  315 (336)
T ss_dssp             TTCCGGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred             CCCCHHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEecccCccccCCcccc
Confidence            5 33222236788999999999998 33   2245555 34888889999999999987764

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=9.7e-21  Score=205.28  Aligned_cols=193  Identities=23%  Similarity=0.352  Sum_probs=132.6

Q ss_pred             CCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccce
Q 042359          623 SYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVV  702 (979)
Q Consensus       623 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~  702 (979)
                      .+++|++|++++|.++ .+| .+..+++|++|++++|++++..+  +..+++|++|++++|++++ +| .+. .+++|+.
T Consensus        39 ~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~-~l~~L~~  111 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIA-GLQSIKT  111 (308)
T ss_dssp             HHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGT-TCTTCCE
T ss_pred             HcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhc-CCCCCCE
Confidence            4555666666666665 233 45556666666666666664333  6666666666666666653 33 233 5667777


Q ss_pred             eeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecC
Q 042359          703 LILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKG  782 (979)
Q Consensus       703 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  782 (979)
                      |++++|++++. | .+..+++|+.|++++|++++..+  +..++.                                   
T Consensus       112 L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~-----------------------------------  152 (308)
T 1h6u_A          112 LDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTN-----------------------------------  152 (308)
T ss_dssp             EECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTT-----------------------------------
T ss_pred             EECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCC-----------------------------------
Confidence            77777776653 3 26777888888888888764332  443333                                   


Q ss_pred             ccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCC
Q 042359          783 EMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSS  862 (979)
Q Consensus       783 ~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~  862 (979)
                                 |+.|+|++|++++..+  +..+++|+.|++++|++++..|  +..+++|+.|+|++|++++..|  +..
T Consensus       153 -----------L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~  215 (308)
T 1h6u_A          153 -----------LQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LAN  215 (308)
T ss_dssp             -----------CCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTT
T ss_pred             -----------ccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccC
Confidence                       3788888888885433  8888889999999998885444  7888889999999999886553  788


Q ss_pred             CCCCCEEEccCCcccc
Q 042359          863 LTFLNHLNLSNNNLTG  878 (979)
Q Consensus       863 l~~L~~L~ls~N~l~g  878 (979)
                      +++|++|++++|++++
T Consensus       216 l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          216 TSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CTTCCEEEEEEEEEEC
T ss_pred             CCCCCEEEccCCeeec
Confidence            8889999999998876

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.84  E-value=3.4e-21  Score=209.49  Aligned_cols=160  Identities=16%  Similarity=0.131  Sum_probs=113.2

Q ss_pred             CCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCC----ccccCCCCCCEEEccCCcccccCCcccCCC
Q 042359          573 SNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELP----DCWMSYQNLKTLKLSNNKFTGNLPYSMGSL  648 (979)
Q Consensus       573 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p----~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  648 (979)
                      ++|++|++++|.+.+..|..+..  ..+++|++|++++|.+.+..+    ..+..+++|++|++++|++.+..|..+..+
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~--~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l  168 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLE--ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF  168 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSS--CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred             CceeEEEeeCCEeccchhhhhhh--ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence            45788888888887777654311  457889999999999887655    334578899999999999998888899999


Q ss_pred             CCccEEEcCCcccccc--cc--ccccCCCCCCEEeccCCcccccCCh---hHHHhhhccceeeccCCcccCCCCccccCC
Q 042359          649 TSLVWLHLGENRLSGN--IL--VSLKNCTALESLDVGENEFVGNIPT---WIGERFSRMVVLILRSNKFHGPLPTGLCDL  721 (979)
Q Consensus       649 ~~L~~L~L~~n~l~~~--~p--~~l~~l~~L~~L~L~~N~l~~~ip~---~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l  721 (979)
                      ++|++|++++|++.+.  ++  ..+..+++|++|++++|+++ .+|.   ++...+++|++|++++|++++..|..+..+
T Consensus       169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~  247 (310)
T 4glp_A          169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRC  247 (310)
T ss_dssp             TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSC
T ss_pred             CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhc
Confidence            9999999999998753  22  33468889999999999986 2332   233345666666666666666555555444


Q ss_pred             ---CCccEEEccCCccc
Q 042359          722 ---AFLQILDIADNNLS  735 (979)
Q Consensus       722 ---~~L~~L~Ls~n~l~  735 (979)
                         ++|+.|++++|+++
T Consensus       248 ~~~~~L~~L~Ls~N~l~  264 (310)
T 4glp_A          248 MWSSALNSLNLSFAGLE  264 (310)
T ss_dssp             CCCTTCCCEECCSSCCC
T ss_pred             cCcCcCCEEECCCCCCC
Confidence               34444444444443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=9.9e-21  Score=205.19  Aligned_cols=192  Identities=21%  Similarity=0.328  Sum_probs=135.9

Q ss_pred             CCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEe
Q 042359          600 TKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLD  679 (979)
Q Consensus       600 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  679 (979)
                      +++|+.|++++|.+.. +| .+..+++|++|++++|++++ ++. +..+++|++|++++|++++.  ..+..+++|++|+
T Consensus        40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~  113 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLD  113 (308)
T ss_dssp             HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEE
T ss_pred             cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEE
Confidence            4567777777776663 33 46667777777777777764 333 77777777777777777652  2577777777777


Q ss_pred             ccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCccccccccccc
Q 042359          680 VGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQ  759 (979)
Q Consensus       680 L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~  759 (979)
                      +++|++++ +|. +. .+++|+.|++++|++++..+  +..+++|+.|++++|++++..+  +..++.|           
T Consensus       114 l~~n~l~~-~~~-l~-~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L-----------  175 (308)
T 1h6u_A          114 LTSTQITD-VTP-LA-GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKL-----------  175 (308)
T ss_dssp             CTTSCCCC-CGG-GT-TCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTC-----------
T ss_pred             CCCCCCCC-chh-hc-CCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCC-----------
Confidence            77777764 443 33 57777888888887775433  7777888888888888764322  4444433           


Q ss_pred             ccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCcc
Q 042359          760 QYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVM  839 (979)
Q Consensus       760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l  839 (979)
                                                         +.|++++|++++..|  +..+++|+.|+|++|++++..|  +..+
T Consensus       176 -----------------------------------~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l  216 (308)
T 1h6u_A          176 -----------------------------------TTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANT  216 (308)
T ss_dssp             -----------------------------------CEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTC
T ss_pred             -----------------------------------CEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCC
Confidence                                               778888888875443  7788888888888888886553  7888


Q ss_pred             CCCCEEECcCCcccc
Q 042359          840 RSLESIDFSANQLSG  854 (979)
Q Consensus       840 ~~L~~LdLs~N~l~~  854 (979)
                      ++|+.|+|++|++++
T Consensus       217 ~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          217 SNLFIVTLTNQTITN  231 (308)
T ss_dssp             TTCCEEEEEEEEEEC
T ss_pred             CCCCEEEccCCeeec
Confidence            888888888888875

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.84  E-value=3.9e-20  Score=194.43  Aligned_cols=181  Identities=19%  Similarity=0.277  Sum_probs=139.1

Q ss_pred             CcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEec
Q 042359          601 KSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDV  680 (979)
Q Consensus       601 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  680 (979)
                      ...+.++++++.+. .+|..+.  ++++.|++++|.+++..+..|..+++|++|++++|.+++..+..+.++++|++|++
T Consensus        14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            46789999999998 6676665  68999999999999888888999999999999999999988888899999999999


Q ss_pred             cCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccc
Q 042359          681 GENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQ  760 (979)
Q Consensus       681 ~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~  760 (979)
                      ++|++++ +|.                        ..+..+++|+.|++++|++++..|..+..++.|            
T Consensus        91 ~~n~l~~-~~~------------------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L------------  133 (251)
T 3m19_A           91 ANNQLAS-LPL------------------------GVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKL------------  133 (251)
T ss_dssp             TTSCCCC-CCT------------------------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC------------
T ss_pred             CCCcccc-cCh------------------------hHhcccCCCCEEEcCCCcCCCcChhHhccCCcc------------
Confidence            8888873 332                        223344555555555555554333334443333            


Q ss_pred             cCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccC
Q 042359          761 YLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMR  840 (979)
Q Consensus       761 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~  840 (979)
                                                        +.|+|++|++++..|..++.+++|+.|+|++|++++..|..+..++
T Consensus       134 ----------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  179 (251)
T 3m19_A          134 ----------------------------------KELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLG  179 (251)
T ss_dssp             ----------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred             ----------------------------------cEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCC
Confidence                                              5667777777755556778888888888888888877777888888


Q ss_pred             CCCEEECcCCccccc
Q 042359          841 SLESIDFSANQLSGE  855 (979)
Q Consensus       841 ~L~~LdLs~N~l~~~  855 (979)
                      +|+.|+|++|++++.
T Consensus       180 ~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          180 KLQTITLFGNQFDCS  194 (251)
T ss_dssp             TCCEEECCSCCBCTT
T ss_pred             CCCEEEeeCCceeCC
Confidence            888888888888876

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.83  E-value=1.4e-20  Score=196.31  Aligned_cols=197  Identities=14%  Similarity=0.125  Sum_probs=148.1

Q ss_pred             cccEEeccCccccccCCccccCCCCCCEEEccCCc-ccccCCcccCCCCCccEEEcCC-ccccccccccccCCCCCCEEe
Q 042359          602 SLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNK-FTGNLPYSMGSLTSLVWLHLGE-NRLSGNILVSLKNCTALESLD  679 (979)
Q Consensus       602 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~  679 (979)
                      +|+.|++++|++++..+..+.++++|++|++++|+ +++..+..|..+++|++|++++ |++++..+..|.++++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            56666666666665555567777777777777776 6655555677777888888877 777766666777788888888


Q ss_pred             ccCCcccccCChhHHHhhhccc---eeeccCC-cccCCCCccccCCCCcc-EEEccCCccccccCcchhhcccCcccccc
Q 042359          680 VGENEFVGNIPTWIGERFSRMV---VLILRSN-KFHGPLPTGLCDLAFLQ-ILDIADNNLSGAIPNCINNLTGMVTACSF  754 (979)
Q Consensus       680 L~~N~l~~~ip~~~~~~l~~L~---~L~L~~n-~l~~~~p~~l~~l~~L~-~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~  754 (979)
                      +++|++++ +|. +. .+++|+   .|++++| ++++..+..+..+++|+ .|++++|+++ .+|......+        
T Consensus       112 l~~n~l~~-lp~-~~-~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~--------  179 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LT-KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGT--------  179 (239)
T ss_dssp             EEEECCCS-CCC-CT-TCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTC--------
T ss_pred             CCCCCCcc-ccc-cc-cccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCC--------
Confidence            88888774 665 33 577777   8888888 88766667788899999 9999999987 5554322112        


Q ss_pred             cccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCc-ccccccccccCC-CCCCEEeCCCCcceecc
Q 042359          755 TRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNN-FSGKIPLEVTNL-KALQSLNFSYNSFTGRI  832 (979)
Q Consensus       755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~-l~~~ip~~l~~l-~~L~~L~Ls~N~l~~~i  832 (979)
                                                            .|+.|+|++|+ +++..+..+..+ ++|+.|++++|+++ .+
T Consensus       180 --------------------------------------~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l  220 (239)
T 2xwt_C          180 --------------------------------------KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-AL  220 (239)
T ss_dssp             --------------------------------------EEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CC
T ss_pred             --------------------------------------CCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cC
Confidence                                                  34899999995 987667788999 99999999999999 56


Q ss_pred             CCCCCccCCCCEEECcCCc
Q 042359          833 PESIGVMRSLESIDFSANQ  851 (979)
Q Consensus       833 p~~~~~l~~L~~LdLs~N~  851 (979)
                      |..  .+++|+.|+++++.
T Consensus       221 ~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          221 PSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             CCT--TCTTCSEEECTTC-
T ss_pred             Chh--HhccCceeeccCcc
Confidence            654  67899999998763

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.81  E-value=7.4e-20  Score=212.50  Aligned_cols=114  Identities=29%  Similarity=0.421  Sum_probs=57.1

Q ss_pred             cccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEecc
Q 042359          602 SLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVG  681 (979)
Q Consensus       602 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  681 (979)
                      +++.|++++|.+++ +|..+.  ++|++|++++|+++ .+|   ..+++|++|++++|++++ +|. +.+  +|++|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            56666666666654 444332  45666666666665 444   234555555555555554 444 333  55555555


Q ss_pred             CCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccc
Q 042359          682 ENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLS  735 (979)
Q Consensus       682 ~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  735 (979)
                      +|++++ +|.    .+++|+.|++++|++++ +|.   .+++|+.|++++|+++
T Consensus       129 ~N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~  173 (571)
T 3cvr_A          129 NNQLTM-LPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLT  173 (571)
T ss_dssp             SSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred             CCcCCC-CCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCC
Confidence            555553 443    23444444444444443 332   2344444444444443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.81  E-value=6.1e-20  Score=213.21  Aligned_cols=181  Identities=23%  Similarity=0.375  Sum_probs=100.2

Q ss_pred             CCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeec
Q 042359          626 NLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLIL  705 (979)
Q Consensus       626 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L  705 (979)
                      +|+.|++++|.+++ +|..+.  ++|++|++++|+++ .+|   ..+++|++|++++|++++ +|. +.   .+|+.|++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~---~~L~~L~L  127 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LP---ASLKHLDV  127 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CC---TTCCEEEC
T ss_pred             CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hh---cCCCEEEC
Confidence            56666666666654 554442  55666666666665 344   335566666666666654 555 32   15666666


Q ss_pred             cCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccc
Q 042359          706 RSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMV  785 (979)
Q Consensus       706 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  785 (979)
                      ++|++++ +|.   .+++|+.|++++|++++ +|.   .++                                       
T Consensus       128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~---------------------------------------  160 (571)
T 3cvr_A          128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPT---------------------------------------  160 (571)
T ss_dssp             CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCT---------------------------------------
T ss_pred             CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCC---------------------------------------
Confidence            6666654 444   45566666666666653 443   111                                       


Q ss_pred             hhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCC-------CEEECcCCcccccCCC
Q 042359          786 DYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSL-------ESIDFSANQLSGEIPE  858 (979)
Q Consensus       786 ~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L-------~~LdLs~N~l~~~ip~  858 (979)
                             .|+.|+|++|++++ +|. +.  ++|+.|+|++|+|+ .+|. +..  +|       +.|+|++|+|+ .+|.
T Consensus       161 -------~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~  224 (571)
T 3cvr_A          161 -------SLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPE  224 (571)
T ss_dssp             -------TCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCG
T ss_pred             -------CcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCH
Confidence                   22556666666664 554 44  56666666666666 5555 443  45       66666666665 4555


Q ss_pred             CCCCCCCCCEEEccCCcccccCC
Q 042359          859 SMSSLTFLNHLNLSNNNLTGKIP  881 (979)
Q Consensus       859 ~l~~l~~L~~L~ls~N~l~g~ip  881 (979)
                      .+..+++|++|+|++|+++|.+|
T Consensus       225 ~l~~l~~L~~L~L~~N~l~~~~p  247 (571)
T 3cvr_A          225 NILSLDPTCTIILEDNPLSSRIR  247 (571)
T ss_dssp             GGGGSCTTEEEECCSSSCCHHHH
T ss_pred             HHhcCCCCCEEEeeCCcCCCcCH
Confidence            55556666666666666665554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.79  E-value=7.3e-19  Score=194.47  Aligned_cols=223  Identities=16%  Similarity=0.117  Sum_probs=127.0

Q ss_pred             CcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCC-cccCCCCCccE-EEcCCccccccccccccCCCCCCEE
Q 042359          601 KSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLP-YSMGSLTSLVW-LHLGENRLSGNILVSLKNCTALESL  678 (979)
Q Consensus       601 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~-L~L~~n~l~~~~p~~l~~l~~L~~L  678 (979)
                      +++++|+|++|+++...+..|.++++|++|+|++|++.+.+| ..|.+++++++ +.+++|++++..|..|.++++|++|
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L  109 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  109 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence            345555555555554334456666666666666666655444 34556665543 4455566666556666666677777


Q ss_pred             eccCCcccccCChhHHHhhhccceeeccC-CcccCCCCccccCCC-CccEEEccCCccccccCcchhhcccCcccccccc
Q 042359          679 DVGENEFVGNIPTWIGERFSRMVVLILRS-NKFHGPLPTGLCDLA-FLQILDIADNNLSGAIPNCINNLTGMVTACSFTR  756 (979)
Q Consensus       679 ~L~~N~l~~~ip~~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~  756 (979)
                      ++++|++.+..+.... ...++..+++.+ +++....+..+..+. .++.|++++|+++ .+|......+          
T Consensus       110 ~l~~n~l~~~~~~~~~-~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~----------  177 (350)
T 4ay9_X          110 LISNTGIKHLPDVHKI-HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGT----------  177 (350)
T ss_dssp             EEEEECCSSCCCCTTC-CBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTE----------
T ss_pred             cccccccccCCchhhc-ccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhcccc----------
Confidence            7776666532222222 344555666644 344433344455543 4677777777776 3443322222          


Q ss_pred             cccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccc-cccCCCCCCEEeCCCCcceeccCCC
Q 042359          757 SVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPL-EVTNLKALQSLNFSYNSFTGRIPES  835 (979)
Q Consensus       757 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~-~l~~l~~L~~L~Ls~N~l~~~ip~~  835 (979)
                                                          .++.+++++|+..+.+|. .|+.+++|+.|||++|+|+ .+|..
T Consensus       178 ------------------------------------~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~  220 (350)
T 4ay9_X          178 ------------------------------------QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY  220 (350)
T ss_dssp             ------------------------------------EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSS
T ss_pred             ------------------------------------chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChh
Confidence                                                236677765333335553 5677778888888888877 44442


Q ss_pred             CCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCc
Q 042359          836 IGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNN  875 (979)
Q Consensus       836 ~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~  875 (979)
                        .+.+|+.|.+.++.--..+|. +.++++|+.++++++.
T Consensus       221 --~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~~  257 (350)
T 4ay9_X          221 --GLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYPS  257 (350)
T ss_dssp             --SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCHH
T ss_pred             --hhccchHhhhccCCCcCcCCC-chhCcChhhCcCCCCc
Confidence              234555555555444445663 6777778888877654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.79  E-value=3.4e-19  Score=181.41  Aligned_cols=81  Identities=15%  Similarity=0.112  Sum_probs=45.7

Q ss_pred             eEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCC
Q 042359          795 RMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNN  874 (979)
Q Consensus       795 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N  874 (979)
                      +.|+|++|++++..+..++.+++|+.|+|++|++++..+..++.+++|+.|++++|.+.+.       ++.|++|+++.|
T Consensus       103 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n  175 (208)
T 2o6s_A          103 KELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWIN  175 (208)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHH
T ss_pred             CEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHHHHHHH
Confidence            4455555555544444455566666666666666654444456666666666666655532       334566666666


Q ss_pred             cccccCCC
Q 042359          875 NLTGKIPS  882 (979)
Q Consensus       875 ~l~g~ip~  882 (979)
                      +++|.+|.
T Consensus       176 ~~~g~ip~  183 (208)
T 2o6s_A          176 KHSGVVRN  183 (208)
T ss_dssp             HCTTTBBC
T ss_pred             hCCceeec
Confidence            66666664

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.78  E-value=8.1e-19  Score=179.81  Aligned_cols=155  Identities=19%  Similarity=0.237  Sum_probs=123.9

Q ss_pred             EEeccCCcccccCChhHHHhhhccceeeccCCcccCCCC-ccccCCCCccEEEccCCccccccCcchhhcccCccccccc
Q 042359          677 SLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLP-TGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFT  755 (979)
Q Consensus       677 ~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~  755 (979)
                      .+++++|.++ .+|..+.   ..++.|++++|++++..| ..+..+++|+.|++++|++++..|..+.+++.|       
T Consensus        15 ~l~~s~n~l~-~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L-------   83 (220)
T 2v70_A           15 TVDCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV-------   83 (220)
T ss_dssp             EEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC-------
T ss_pred             EeEeCCCCcc-cCccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC-------
Confidence            5555555554 3554432   345666666666665544 346778888888888888887666667666655       


Q ss_pred             ccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCC
Q 042359          756 RSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPES  835 (979)
Q Consensus       756 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~  835 (979)
                                                             +.|+|++|++++..|..|+.+++|++|+|++|++++..|..
T Consensus        84 ---------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  124 (220)
T 2v70_A           84 ---------------------------------------NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDS  124 (220)
T ss_dssp             ---------------------------------------CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTS
T ss_pred             ---------------------------------------CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhH
Confidence                                                   78899999998888888999999999999999999888999


Q ss_pred             CCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCcccccCC
Q 042359          836 IGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIP  881 (979)
Q Consensus       836 ~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip  881 (979)
                      |..+++|+.|||++|++++..|..+..+++|++|++++|++++..+
T Consensus       125 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          125 FIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             STTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             cCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            9999999999999999999889999999999999999999998765

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.78  E-value=7.3e-19  Score=178.97  Aligned_cols=64  Identities=16%  Similarity=0.136  Sum_probs=46.2

Q ss_pred             eEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCC
Q 042359          795 RMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTF  865 (979)
Q Consensus       795 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~  865 (979)
                      +.|+|++|++++..+..+..+++|+.|++++|.+.+.       +++|+.|+++.|+++|.+|++++.++.
T Consensus       127 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          127 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             CEEECCCCccceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHHHHHHHhCCceeeccCccccC
Confidence            6677777777755555577777888888888877643       346778888888888888887777654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.77  E-value=2.1e-18  Score=190.68  Aligned_cols=242  Identities=16%  Similarity=0.164  Sum_probs=177.8

Q ss_pred             cEEEeecccCCCCCCccCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCC-ccccCCCCCCE-EEc
Q 042359          555 LILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELP-DCWMSYQNLKT-LKL  632 (979)
Q Consensus       555 ~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~-L~L  632 (979)
                      +.++.+++.++......++++++|++++|+++...+.    .+.++++|++|+|++|++.+.+| ..|.+++++.+ +.+
T Consensus        12 ~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~----~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKG----AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTT----SSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHH----HHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            3455566666644444567889999999988754433    34568999999999999877666 46788888775 666


Q ss_pred             cCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhh-hccceeeccCCccc
Q 042359          633 SNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERF-SRMVVLILRSNKFH  711 (979)
Q Consensus       633 s~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l-~~L~~L~L~~n~l~  711 (979)
                      +.|+++...|..|..+++|++|++++|++++..+..+....++..|++.++.-...+|...+..+ ..++.|++++|+++
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~  167 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  167 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence            77899977788899999999999999999977777777788888999977543335554433234 46888999999998


Q ss_pred             CCCCccccCCCCccEEEccCCccccccCc-chhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhh
Q 042359          712 GPLPTGLCDLAFLQILDIADNNLSGAIPN-CINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDI  790 (979)
Q Consensus       712 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  790 (979)
                       .+|.......+|+.+++++|+..+.+|. .|..+++|                                          
T Consensus       168 -~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L------------------------------------------  204 (350)
T 4ay9_X          168 -EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGP------------------------------------------  204 (350)
T ss_dssp             -EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECC------------------------------------------
T ss_pred             -CCChhhccccchhHHhhccCCcccCCCHHHhccCccc------------------------------------------
Confidence             4566656678899999987555456664 45666655                                          


Q ss_pred             ccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCc
Q 042359          791 LNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQ  851 (979)
Q Consensus       791 ~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~  851 (979)
                          +.|||++|+|+ .+|..  .+.+|+.|.+.++.--..+|. +.++++|+.++++++.
T Consensus       205 ----~~LdLs~N~l~-~lp~~--~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~~  257 (350)
T 4ay9_X          205 ----VILDISRTRIH-SLPSY--GLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYPS  257 (350)
T ss_dssp             ----SEEECTTSCCC-CCCSS--SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCHH
T ss_pred             ----chhhcCCCCcC-ccChh--hhccchHhhhccCCCcCcCCC-chhCcChhhCcCCCCc
Confidence                88999999999 45542  245666666555544447884 8889999999998765

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.75  E-value=4.6e-18  Score=174.18  Aligned_cols=154  Identities=17%  Similarity=0.233  Sum_probs=125.5

Q ss_pred             CEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCccccccc
Q 042359          676 ESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFT  755 (979)
Q Consensus       676 ~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~  755 (979)
                      +.++++++.++ .+|..+.   ++++.|++++|++++..+..+..+++|+.|++++|++++..|..+.+++.|       
T Consensus        14 ~~v~c~~~~l~-~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L-------   82 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL-------   82 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSC-------
T ss_pred             CEEEcCCCCcC-cCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC-------
Confidence            45566666655 4555432   467777777777776666678888888899999888887778777776665       


Q ss_pred             ccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCC
Q 042359          756 RSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPES  835 (979)
Q Consensus       756 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~  835 (979)
                                                             +.|+|++|++++..+..|..+++|+.|+|++|++++..|..
T Consensus        83 ---------------------------------------~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~  123 (220)
T 2v9t_B           83 ---------------------------------------NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDA  123 (220)
T ss_dssp             ---------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             ---------------------------------------CEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHH
Confidence                                                   78899999998655566788999999999999999888999


Q ss_pred             CCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCccccc
Q 042359          836 IGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGK  879 (979)
Q Consensus       836 ~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~  879 (979)
                      |..+++|+.|||++|++++..|..+..+++|++|++++|++.+.
T Consensus       124 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  167 (220)
T 2v9t_B          124 FQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD  167 (220)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             cCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence            99999999999999999988888899999999999999999864

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.74  E-value=1e-17  Score=172.96  Aligned_cols=155  Identities=21%  Similarity=0.268  Sum_probs=126.1

Q ss_pred             CEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCccccccc
Q 042359          676 ESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFT  755 (979)
Q Consensus       676 ~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~  755 (979)
                      +.++.+++.+. .+|..+   .++|+.|++++|++++..|..+..+++|+.|++++|++.+..+..+..++.|       
T Consensus        22 ~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L-------   90 (229)
T 3e6j_A           22 TTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL-------   90 (229)
T ss_dssp             TEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------
T ss_pred             CEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCc-------
Confidence            45666666554 566543   2677777777787777777778888888888888888864444555555554       


Q ss_pred             ccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCC
Q 042359          756 RSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPES  835 (979)
Q Consensus       756 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~  835 (979)
                                                             +.|||++|++++..+..+..+++|+.|+|++|+++ .+|..
T Consensus        91 ---------------------------------------~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~  130 (229)
T 3e6j_A           91 ---------------------------------------TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRG  130 (229)
T ss_dssp             ---------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTT
T ss_pred             ---------------------------------------CEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcc
Confidence                                                   78999999999777777899999999999999999 88999


Q ss_pred             CCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCcccccCC
Q 042359          836 IGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIP  881 (979)
Q Consensus       836 ~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip  881 (979)
                      +..+++|+.|+|++|++++..+..+..+++|+.|++++|++++..+
T Consensus       131 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          131 IERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             GGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             cccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            9999999999999999998777889999999999999999998765

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.74  E-value=1e-17  Score=171.55  Aligned_cols=136  Identities=15%  Similarity=0.176  Sum_probs=100.8

Q ss_pred             CEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCccccccc
Q 042359          676 ESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFT  755 (979)
Q Consensus       676 ~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~  755 (979)
                      ++|++++|++++..|...+..+++|+.|++++|++++..+..+..+++|+.|++++|++++..|..+..++.|       
T Consensus        35 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-------  107 (220)
T 2v70_A           35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESL-------  107 (220)
T ss_dssp             SEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSC-------
T ss_pred             CEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCC-------
Confidence            3444444444433332222245555555556666655555667778888888888888877666666666555       


Q ss_pred             ccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCC
Q 042359          756 RSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPES  835 (979)
Q Consensus       756 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~  835 (979)
                                                             +.|+|++|++++..|..+..+++|+.|+|++|++++..|..
T Consensus       108 ---------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  148 (220)
T 2v70_A          108 ---------------------------------------KTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGA  148 (220)
T ss_dssp             ---------------------------------------CEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTT
T ss_pred             ---------------------------------------CEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHH
Confidence                                                   78889999998888899999999999999999999888999


Q ss_pred             CCccCCCCEEECcCCcccccCC
Q 042359          836 IGVMRSLESIDFSANQLSGEIP  857 (979)
Q Consensus       836 ~~~l~~L~~LdLs~N~l~~~ip  857 (979)
                      |..+++|+.|+|++|.+++..+
T Consensus       149 ~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          149 FDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             TTTCTTCCEEECCSCCEECSGG
T ss_pred             hcCCCCCCEEEecCcCCcCCCc
Confidence            9999999999999999987654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.74  E-value=3.1e-18  Score=183.71  Aligned_cols=189  Identities=19%  Similarity=0.276  Sum_probs=111.5

Q ss_pred             ccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccC
Q 042359          603 LNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGE  682 (979)
Q Consensus       603 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~  682 (979)
                      +..+.+..+.+.+..+  ...+++|++|++++|.+.. ++ .+..+++|++|++++|++++..+  +.++++|++|++++
T Consensus        26 ~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~   99 (291)
T 1h6t_A           26 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDE   99 (291)
T ss_dssp             HHHHHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCcccccc--hhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCC
Confidence            3334445554443322  3345667777777776663 33 35666666677776666665333  66666666666666


Q ss_pred             CcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccC
Q 042359          683 NEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYL  762 (979)
Q Consensus       683 N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~  762 (979)
                      |++++ +|                          .+..+++|+.|++++|++++.  ..+..++.               
T Consensus       100 n~l~~-~~--------------------------~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~---------------  135 (291)
T 1h6t_A          100 NKVKD-LS--------------------------SLKDLKKLKSLSLEHNGISDI--NGLVHLPQ---------------  135 (291)
T ss_dssp             SCCCC-GG--------------------------GGTTCTTCCEEECTTSCCCCC--GGGGGCTT---------------
T ss_pred             CcCCC-Ch--------------------------hhccCCCCCEEECCCCcCCCC--hhhcCCCC---------------
Confidence            66552 22                          244455555555555555431  12222222               


Q ss_pred             CCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCC
Q 042359          763 PLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSL  842 (979)
Q Consensus       763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L  842 (979)
                                                     |+.|++++|++++.  ..++.+++|+.|++++|++++..|  +..+++|
T Consensus       136 -------------------------------L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L  180 (291)
T 1h6t_A          136 -------------------------------LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKL  180 (291)
T ss_dssp             -------------------------------CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred             -------------------------------CCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCcc
Confidence                                           35666666666643  456667777777777777775444  6777777


Q ss_pred             CEEECcCCcccccCCCCCCCCCCCCEEEccCCcccc
Q 042359          843 ESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTG  878 (979)
Q Consensus       843 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  878 (979)
                      +.|+|++|++++ +|. +..+++|+.|++++|+++.
T Consensus       181 ~~L~L~~N~i~~-l~~-l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          181 QNLYLSKNHISD-LRA-LAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CEEECCSSCCCB-CGG-GTTCTTCSEEEEEEEEEEC
T ss_pred             CEEECCCCcCCC-Chh-hccCCCCCEEECcCCcccC
Confidence            777777777774 343 6777777777777777765

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=3.2e-18  Score=201.31  Aligned_cols=191  Identities=26%  Similarity=0.384  Sum_probs=119.4

Q ss_pred             CCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccE
Q 042359          574 NLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVW  653 (979)
Q Consensus       574 ~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  653 (979)
                      .+..+.+..+.+.+..+.      ..++.|+.|++++|.+.. +| .+..+++|+.|+|++|++++..|  +..+++|+.
T Consensus        22 ~l~~l~l~~~~i~~~~~~------~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~   91 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAVTQ------NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGW   91 (605)
T ss_dssp             HHHHHHTTCSCTTSEECH------HHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCE
T ss_pred             HHHHHhccCCCcccccch------hcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCE
Confidence            344455555555543331      235677777777777763 33 46677777777777777775433  667777777


Q ss_pred             EEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCc
Q 042359          654 LHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNN  733 (979)
Q Consensus       654 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  733 (979)
                      |+|++|.+++ + ..+..+++|+.|+|++|.+.+ +| .+. .+++|+.|+|++|++++.  ..+..+++|+.|+|++|+
T Consensus        92 L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~-l~-~l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~  164 (605)
T 1m9s_A           92 LFLDENKIKD-L-SSLKDLKKLKSLSLEHNGISD-IN-GLV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQ  164 (605)
T ss_dssp             EECCSSCCCC-C-TTSTTCTTCCEEECTTSCCCC-CG-GGG-GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSC
T ss_pred             EECcCCCCCC-C-hhhccCCCCCEEEecCCCCCC-Cc-ccc-CCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCc
Confidence            7777777764 2 256777777777777777763 33 233 566777777777776654  456666777777777776


Q ss_pred             cccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCccccccccccc
Q 042359          734 LSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVT  813 (979)
Q Consensus       734 l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~  813 (979)
                      +.+..|  +..++.|                                              +.|+|++|++++. | .+.
T Consensus       165 l~~~~~--l~~l~~L----------------------------------------------~~L~Ls~N~i~~l-~-~l~  194 (605)
T 1m9s_A          165 ISDIVP--LAGLTKL----------------------------------------------QNLYLSKNHISDL-R-ALA  194 (605)
T ss_dssp             CCCCGG--GTTCTTC----------------------------------------------CEEECCSSCCCBC-G-GGT
T ss_pred             CCCchh--hccCCCC----------------------------------------------CEEECcCCCCCCC-h-HHc
Confidence            665444  4443333                                              6667777766643 3 466


Q ss_pred             CCCCCCEEeCCCCcceec
Q 042359          814 NLKALQSLNFSYNSFTGR  831 (979)
Q Consensus       814 ~l~~L~~L~Ls~N~l~~~  831 (979)
                      .+++|+.|+|++|.+++.
T Consensus       195 ~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          195 GLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             TCTTCSEEECCSEEEECC
T ss_pred             cCCCCCEEEccCCcCcCC
Confidence            666777777777766643

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.73  E-value=3.2e-20  Score=217.03  Aligned_cols=154  Identities=19%  Similarity=0.224  Sum_probs=110.1

Q ss_pred             ccccccccccCCCCCCEEe-ccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccC
Q 042359          661 LSGNILVSLKNCTALESLD-VGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIP  739 (979)
Q Consensus       661 l~~~~p~~l~~l~~L~~L~-L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p  739 (979)
                      ..+..|..+.++++|+.|+ ++.|.            +..|+.+.+.+|.+++..+      ..|+.|++++|++++ +|
T Consensus       397 ~~~~~~~~l~~l~~L~~L~~l~~n~------------~~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp  457 (567)
T 1dce_A          397 PLLYEKETLQYFSTLKAVDPMRAAY------------LDDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LC  457 (567)
T ss_dssp             TGGGHHHHHHHHHHHHHHCGGGHHH------------HHHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CC
T ss_pred             cccCCHHHHHHHHhcccCcchhhcc------------cchhhhhhhhcccccccCc------cCceEEEecCCCCCC-Cc
Confidence            3445555566666666665 44432            2234444555555553221      247888888888875 56


Q ss_pred             cchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCC
Q 042359          740 NCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQ  819 (979)
Q Consensus       740 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~  819 (979)
                      . +++++.|                                              +.|+|++|+|+ .+|..++++++|+
T Consensus       458 ~-~~~l~~L----------------------------------------------~~L~Ls~N~l~-~lp~~~~~l~~L~  489 (567)
T 1dce_A          458 H-LEQLLLV----------------------------------------------THLDLSHNRLR-ALPPALAALRCLE  489 (567)
T ss_dssp             C-GGGGTTC----------------------------------------------CEEECCSSCCC-CCCGGGGGCTTCC
T ss_pred             C-ccccccC----------------------------------------------cEeecCccccc-ccchhhhcCCCCC
Confidence            5 6665555                                              78888888888 7888888888888


Q ss_pred             EEeCCCCcceeccCCCCCccCCCCEEECcCCcccccC-CCCCCCCCCCCEEEccCCcccccCCCC
Q 042359          820 SLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEI-PESMSSLTFLNHLNLSNNNLTGKIPSS  883 (979)
Q Consensus       820 ~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~i-p~~l~~l~~L~~L~ls~N~l~g~ip~~  883 (979)
                      .|+|++|+|++ +| .++.+++|+.|||++|+|++.+ |..++.+++|+.|+|++|++++.+|..
T Consensus       490 ~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~  552 (567)
T 1dce_A          490 VLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ  552 (567)
T ss_dssp             EEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred             EEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence            88888888885 67 7888888888888888888776 888888888888888888888876643

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.72  E-value=8.7e-17  Score=165.86  Aligned_cols=164  Identities=24%  Similarity=0.313  Sum_probs=108.3

Q ss_pred             CCCCCCCCCccccceeccCCCCcEEEEECCCCCCCCchhhHHHhhcccccccccccccCCCCCCEEeCCCCCCCCCCccc
Q 042359           63 ASWSGNGDCCAWAGVFCDNITGHVLHLDLRNPFNYHKESEYEAIRRTALVGKINPSLLDLKHLSYLDLSFNDFQGIQIPR  142 (979)
Q Consensus        63 ~~W~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~lp~  142 (979)
                      ..|..+...|.|.+|.|+..                            -.+.+|..+.  ++|++|+|++|.++++ .|.
T Consensus        10 ~~~~~~~~~Cs~~~v~c~~~----------------------------~l~~ip~~~~--~~L~~L~Ls~n~i~~~-~~~   58 (229)
T 3e6j_A           10 SAACPSQCSCSGTTVDCRSK----------------------------RHASVPAGIP--TNAQILYLHDNQITKL-EPG   58 (229)
T ss_dssp             -CCCCTTCEEETTEEECTTS----------------------------CCSSCCSCCC--TTCSEEECCSSCCCCC-CTT
T ss_pred             hccCCCCCEEeCCEeEccCC----------------------------CcCccCCCCC--CCCCEEEcCCCccCcc-CHH
Confidence            34545778899999999631                            1223444333  7888888888888876 577


Q ss_pred             cccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccccCCCCCCEEEccCccCCCCchhhhhcCCC
Q 042359          143 FFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKL  222 (979)
Q Consensus       143 ~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~l  222 (979)
                      .|..+++|++|+|++|++....+..|..+++|++|+|++|++..++                                  
T Consensus        59 ~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~----------------------------------  104 (229)
T 3e6j_A           59 VFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLP----------------------------------  104 (229)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC----------------------------------
T ss_pred             HhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccC----------------------------------
Confidence            7888888888888888887655556677777777777766554333                                  


Q ss_pred             CCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCccccCCCCCCEEeccCCcCcccCchhhcc
Q 042359          223 PSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYR  302 (979)
Q Consensus       223 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~  302 (979)
                                       +..+..+++|++|++++|.++.          +|..+..+++|++|++++|++++..+..+..
T Consensus       105 -----------------~~~~~~l~~L~~L~Ls~N~l~~----------lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  157 (229)
T 3e6j_A          105 -----------------SAVFDRLVHLKELFMCCNKLTE----------LPRGIERLTHLTHLALDQNQLKSIPHGAFDR  157 (229)
T ss_dssp             -----------------TTTTTTCTTCCEEECCSSCCCS----------CCTTGGGCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred             -----------------hhHhCcchhhCeEeccCCcccc----------cCcccccCCCCCEEECCCCcCCccCHHHHhC
Confidence                             3344455556666666666542          4555566666666666666666555555666


Q ss_pred             CCCCCEEeccCCcCcc
Q 042359          303 FIHLEYLSLSNNSLQG  318 (979)
Q Consensus       303 l~~L~~L~L~~n~l~~  318 (979)
                      +++|++|++++|.+..
T Consensus       158 l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          158 LSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             CTTCCEEECTTSCBCT
T ss_pred             CCCCCEEEeeCCCccC
Confidence            6666666666666653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.72  E-value=2.7e-20  Score=217.61  Aligned_cols=202  Identities=20%  Similarity=0.199  Sum_probs=153.6

Q ss_pred             CCcccEEeccCccccccCCccccCCCCCCEEEccCCc-------------ccccCCcccCCCCCccEEE-cCCccccccc
Q 042359          600 TKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNK-------------FTGNLPYSMGSLTSLVWLH-LGENRLSGNI  665 (979)
Q Consensus       600 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-------------l~~~~p~~l~~l~~L~~L~-L~~n~l~~~~  665 (979)
                      ++.|+.|+|++|++. .+|..++.+++|+.|++++|.             ..+..|..++.+++|+.|+ ++.|.+.   
T Consensus       348 ~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~---  423 (567)
T 1dce_A          348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD---  423 (567)
T ss_dssp             TTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH---
T ss_pred             CccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc---
Confidence            456666666666665 556666666666666665554             4556677778888888888 6666543   


Q ss_pred             cccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhc
Q 042359          666 LVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNL  745 (979)
Q Consensus       666 p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l  745 (979)
                              .|+.+.+++|.+.. +|      ...|+.|++++|.+++ +|. ++.+++|+.|++++|+++ .+|..++++
T Consensus       424 --------~L~~l~l~~n~i~~-l~------~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l  485 (567)
T 1dce_A          424 --------DLRSKFLLENSVLK-ME------YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAAL  485 (567)
T ss_dssp             --------HHHHHHHHHHHHHH-HH------HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGC
T ss_pred             --------hhhhhhhhcccccc-cC------ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcC
Confidence                    34455666666652 22      2358888888888886 565 888999999999999998 788888777


Q ss_pred             ccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCC
Q 042359          746 TGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSY  825 (979)
Q Consensus       746 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~  825 (979)
                      ++|                                              +.|+|++|++++ +| .++++++|+.|+|++
T Consensus       486 ~~L----------------------------------------------~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~  517 (567)
T 1dce_A          486 RCL----------------------------------------------EVLQASDNALEN-VD-GVANLPRLQELLLCN  517 (567)
T ss_dssp             TTC----------------------------------------------CEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred             CCC----------------------------------------------CEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence            766                                              789999999996 77 899999999999999


Q ss_pred             Ccceecc-CCCCCccCCCCEEECcCCcccccCCCC---CCCCCCCCEEEc
Q 042359          826 NSFTGRI-PESIGVMRSLESIDFSANQLSGEIPES---MSSLTFLNHLNL  871 (979)
Q Consensus       826 N~l~~~i-p~~~~~l~~L~~LdLs~N~l~~~ip~~---l~~l~~L~~L~l  871 (979)
                      |+|++.+ |..++.+++|+.|+|++|++++.+|..   +..+++|+.||+
T Consensus       518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            9999877 999999999999999999999776533   233788998875

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.72  E-value=4.3e-17  Score=174.82  Aligned_cols=172  Identities=26%  Similarity=0.323  Sum_probs=123.8

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccccCCCC
Q 042359          119 LLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSF  198 (979)
Q Consensus       119 l~~l~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~  198 (979)
                      +.++++|++|++++|.+...  + .++.+++|++|++++|++++..+  +.++++|++|++++|.+..++.   +..+++
T Consensus        42 ~~~l~~L~~L~l~~~~i~~~--~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~---l~~l~~  113 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKSV--Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS---LKDLKK  113 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCCC--T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG---GTTCTT
T ss_pred             hhhcCcccEEEccCCCcccC--h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh---hccCCC
Confidence            45688899999999988863  4 37888999999999999886544  8888999999999988776543   677777


Q ss_pred             CCEEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCccccC
Q 042359          199 LEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQN  278 (979)
Q Consensus       199 L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~  278 (979)
                      |++|++++|.+.+.    ..+..+++|++|++++|+++++  ..+..+++|++|++++|.++.          ++. +..
T Consensus       114 L~~L~L~~n~i~~~----~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~----------~~~-l~~  176 (291)
T 1h6t_A          114 LKSLSLEHNGISDI----NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD----------IVP-LAG  176 (291)
T ss_dssp             CCEEECTTSCCCCC----GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC----------CGG-GTT
T ss_pred             CCEEECCCCcCCCC----hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc----------chh-hcC
Confidence            88888877777764    2355667777777777777665  456667777777777777653          222 666


Q ss_pred             CCCCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCc
Q 042359          279 LTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQ  317 (979)
Q Consensus       279 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  317 (979)
                      +++|++|++++|.+++. + .+..+++|++|++++|.+.
T Consensus       177 l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          177 LTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             CTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred             CCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCccc
Confidence            67777777777776643 3 3666677777777776665

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.72  E-value=4.6e-17  Score=191.39  Aligned_cols=148  Identities=28%  Similarity=0.325  Sum_probs=79.3

Q ss_pred             CCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCc
Q 042359          572 SSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSL  651 (979)
Q Consensus       572 ~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  651 (979)
                      +.+|+.|++++|.+... +     .+..+++|+.|+|++|.+.+..|  +..+++|+.|+|++|++.+ +| .+..+++|
T Consensus        42 L~~L~~L~l~~n~i~~l-~-----~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L  111 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKSV-Q-----GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKL  111 (605)
T ss_dssp             HTTCCCCBCTTCCCCCC-T-----TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTC
T ss_pred             CCCCCEEECcCCCCCCC-h-----HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCC
Confidence            44555566665555432 1     12335556666666665554333  5555566666666665553 22 45555566


Q ss_pred             cEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccC
Q 042359          652 VWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIAD  731 (979)
Q Consensus       652 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  731 (979)
                      +.|+|++|++++.  ..+..+++|+.|+|++|.+++.  ..+. .+++|+.|+|++|++.+..|  +..+++|+.|+|++
T Consensus       112 ~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~-~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~  184 (605)
T 1m9s_A          112 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLS-RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK  184 (605)
T ss_dssp             CEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGG-SCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred             CEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhc-ccCCCCEEECcCCcCCCchh--hccCCCCCEEECcC
Confidence            6666666665542  2355556666666666655532  2232 45556666666666554444  55556666666666


Q ss_pred             Ccccc
Q 042359          732 NNLSG  736 (979)
Q Consensus       732 n~l~~  736 (979)
                      |++++
T Consensus       185 N~i~~  189 (605)
T 1m9s_A          185 NHISD  189 (605)
T ss_dssp             SCCCB
T ss_pred             CCCCC
Confidence            65553

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.71  E-value=1e-17  Score=186.08  Aligned_cols=111  Identities=23%  Similarity=0.164  Sum_probs=67.0

Q ss_pred             CEEEccCCcccccCCcccCCCCCccEEEcCCcccccccccccc-CCCCCCEEeccCCcccccCChhHHHhhhccceeecc
Q 042359          628 KTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLK-NCTALESLDVGENEFVGNIPTWIGERFSRMVVLILR  706 (979)
Q Consensus       628 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~  706 (979)
                      +.++++++.++ .+|..+.  +.++.|+|++|++++..+..+. ++++|++|+|++|++++..|..+. .+++|+.|+|+
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~-~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV-PVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECC
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhcc-CCCCCCEEECC
Confidence            57888888887 5776554  4578888888888876666666 777777777777777643333333 45555555555


Q ss_pred             CCcccCCCCccccCCCCccEEEccCCccccccCcch
Q 042359          707 SNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCI  742 (979)
Q Consensus       707 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~  742 (979)
                      +|++++..+..|..+++|+.|+|++|++++..|..+
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~  132 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAF  132 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHh
Confidence            555554444444444444444444444443333333

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.70  E-value=3.2e-17  Score=164.03  Aligned_cols=132  Identities=19%  Similarity=0.263  Sum_probs=104.8

Q ss_pred             ceeeccCCcccCCCCccccCCCCccEEEccCCccccccCc-chhhcccCcccccccccccccCCCCcccceeeeeeeEEe
Q 042359          701 VVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPN-CINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVV  779 (979)
Q Consensus       701 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  779 (979)
                      +.+++++|.++ .+|..+..  +++.|++++|++++..|. .+.+++.|                               
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L-------------------------------   56 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHL-------------------------------   56 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTC-------------------------------
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCC-------------------------------
Confidence            45666666664 45554433  778888888888755543 25555444                               


Q ss_pred             ecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCC
Q 042359          780 SKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPES  859 (979)
Q Consensus       780 ~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~  859 (979)
                                     +.|+|++|++++.+|..|+++++|+.|+|++|++++..|..|+.+++|++|||++|++++.+|..
T Consensus        57 ---------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  121 (192)
T 1w8a_A           57 ---------------VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGS  121 (192)
T ss_dssp             ---------------CEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTS
T ss_pred             ---------------CEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHH
Confidence                           78888888888888888889999999999999999888888888999999999999999888999


Q ss_pred             CCCCCCCCEEEccCCcccccCC
Q 042359          860 MSSLTFLNHLNLSNNNLTGKIP  881 (979)
Q Consensus       860 l~~l~~L~~L~ls~N~l~g~ip  881 (979)
                      +..+++|++|++++|+++|..|
T Consensus       122 ~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A          122 FEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             STTCTTCCEEECTTCCBCCSGG
T ss_pred             hhcCCCCCEEEeCCCCccCcCc
Confidence            9999999999999999988765

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.70  E-value=8.4e-17  Score=164.76  Aligned_cols=154  Identities=13%  Similarity=0.210  Sum_probs=108.4

Q ss_pred             CEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccC
Q 042359          628 KTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRS  707 (979)
Q Consensus       628 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~  707 (979)
                      +.++++++.++ .+|..+.  ++|+.|++++|++++..+..|..+++|++|+|++|+++                     
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~---------------------   69 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS---------------------   69 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCC---------------------
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC---------------------
Confidence            46777777776 5565443  56677777777766555555666666666666655554                     


Q ss_pred             CcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchh
Q 042359          708 NKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDY  787 (979)
Q Consensus       708 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  787 (979)
                          +..|..|..+++|+.|++++|++++..+..+..+++|                                       
T Consensus        70 ----~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L---------------------------------------  106 (220)
T 2v9t_B           70 ----ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSL---------------------------------------  106 (220)
T ss_dssp             ----EECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC---------------------------------------
T ss_pred             ----CcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCC---------------------------------------
Confidence                3445556666777777777777764333334444444                                       


Q ss_pred             hhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCccccc
Q 042359          788 EDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGE  855 (979)
Q Consensus       788 ~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~  855 (979)
                             +.|+|++|++++..|..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++...
T Consensus       107 -------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  167 (220)
T 2v9t_B          107 -------QLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD  167 (220)
T ss_dssp             -------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             -------CEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence                   7788888888877788888889999999999999987777888899999999999988753

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.69  E-value=6.7e-17  Score=162.66  Aligned_cols=154  Identities=17%  Similarity=0.316  Sum_probs=93.9

Q ss_pred             CCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccE
Q 042359          647 SLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQI  726 (979)
Q Consensus       647 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  726 (979)
                      .+++|++|++++|.++ .+| .+..+++|++|++++|.+.                           .+..+..+++|+.
T Consensus        42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~---------------------------~~~~l~~l~~L~~   92 (197)
T 4ezg_A           42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT---------------------------NYNPISGLSNLER   92 (197)
T ss_dssp             HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS---------------------------CCGGGTTCTTCCE
T ss_pred             hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC---------------------------cchhhhcCCCCCE
Confidence            3455556666655555 333 3445555555555555332                           1224555666666


Q ss_pred             EEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccc
Q 042359          727 LDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSG  806 (979)
Q Consensus       727 L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~  806 (979)
                      |++++|++++..|..++.++.|                                              +.|++++|++++
T Consensus        93 L~l~~n~l~~~~~~~l~~l~~L----------------------------------------------~~L~Ls~n~i~~  126 (197)
T 4ezg_A           93 LRIMGKDVTSDKIPNLSGLTSL----------------------------------------------TLLDISHSAHDD  126 (197)
T ss_dssp             EEEECTTCBGGGSCCCTTCTTC----------------------------------------------CEEECCSSBCBG
T ss_pred             EEeECCccCcccChhhcCCCCC----------------------------------------------CEEEecCCccCc
Confidence            6666666666555555554444                                              667777777776


Q ss_pred             cccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCcccc
Q 042359          807 KIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTG  878 (979)
Q Consensus       807 ~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  878 (979)
                      ..|..++.+++|+.|++++|++.+.+| .++.+++|+.|++++|++++ +| .+..+++|++|++++|++.+
T Consensus       127 ~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          127 SILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             GGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             HhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence            667777777777777777777333555 57777777777777777775 33 56777777788887777653

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.68  E-value=1.1e-17  Score=202.16  Aligned_cols=191  Identities=19%  Similarity=0.189  Sum_probs=120.0

Q ss_pred             eccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCccc
Q 042359          607 QLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFV  686 (979)
Q Consensus       607 ~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~  686 (979)
                      +++.|.+. ..|..+..+++|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+.++++|++|+|++|.++
T Consensus       207 ~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~  283 (727)
T 4b8c_D          207 DDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT  283 (727)
T ss_dssp             ----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS
T ss_pred             ccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC
Confidence            33444444 45677888889999999999988 77877778899999999999998 78888899999999999999998


Q ss_pred             ccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCc
Q 042359          687 GNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPI  766 (979)
Q Consensus       687 ~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~  766 (979)
                       .+|..+. .+++|++|+|++|.++ .+|..|+.+++|+.|+|++|++++.+|..+..+...                  
T Consensus       284 -~lp~~~~-~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~------------------  342 (727)
T 4b8c_D          284 -SLPAELG-SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVT------------------  342 (727)
T ss_dssp             -SCCSSGG-GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHH------------------
T ss_pred             -ccChhhc-CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchh------------------
Confidence             7888887 7899999999999887 778889999999999999999998888877654322                  


Q ss_pred             ccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCC--------cceeccCCCCCc
Q 042359          767 DVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYN--------SFTGRIPESIGV  838 (979)
Q Consensus       767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N--------~l~~~ip~~~~~  838 (979)
                                                 ...++|++|.++|.+|..      |+.|++++|        .+.+.++..+..
T Consensus       343 ---------------------------~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~  389 (727)
T 4b8c_D          343 ---------------------------GLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATD  389 (727)
T ss_dssp             ---------------------------HHHHHHHHCCCCCCCCCC-----------------------------------
T ss_pred             ---------------------------hhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhc
Confidence                                       023678888888888865      445666666        444455555566


Q ss_pred             cCCCCEEECcCCcccc
Q 042359          839 MRSLESIDFSANQLSG  854 (979)
Q Consensus       839 l~~L~~LdLs~N~l~~  854 (979)
                      +..++...+++|-+.+
T Consensus       390 l~~~~~~~ls~Nil~~  405 (727)
T 4b8c_D          390 LAKRTFTVLSYNTLCQ  405 (727)
T ss_dssp             ------------CCCG
T ss_pred             ccccceeeeecccccc
Confidence            6666677777777654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.68  E-value=7.6e-18  Score=203.42  Aligned_cols=193  Identities=19%  Similarity=0.164  Sum_probs=124.2

Q ss_pred             EEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCc
Q 042359          630 LKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNK  709 (979)
Q Consensus       630 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~  709 (979)
                      ++++.|.+. ..|..+..++.|+.|+|++|.+. .+|..+.++++|++|+|++|.++ .+|..+. .+++|++|+|++|.
T Consensus       206 ~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~N~  281 (727)
T 4b8c_D          206 DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIK-NLSNLRVLDLSHNR  281 (727)
T ss_dssp             -----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGG-GGTTCCEEECTTSC
T ss_pred             cccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhh-CCCCCCEEeCcCCc
Confidence            345556665 56778889999999999999998 67777779999999999999998 8998887 79999999999999


Q ss_pred             ccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhh
Q 042359          710 FHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYED  789 (979)
Q Consensus       710 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  789 (979)
                      |+ .+|..++.+++|+.|+|++|.++ .+|..|++++.|                                         
T Consensus       282 l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L-----------------------------------------  318 (727)
T 4b8c_D          282 LT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNL-----------------------------------------  318 (727)
T ss_dssp             CS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTC-----------------------------------------
T ss_pred             CC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCc-----------------------------------------
Confidence            99 78999999999999999999996 788888777766                                         


Q ss_pred             hccceeEEecccCcccccccccccCCCC-CCEEeCCCCcceeccCCCCCccCCCCEEECcCC--------cccccCCCCC
Q 042359          790 ILNLVRMIDISRNNFSGKIPLEVTNLKA-LQSLNFSYNSFTGRIPESIGVMRSLESIDFSAN--------QLSGEIPESM  860 (979)
Q Consensus       790 ~~~~L~~LdLs~N~l~~~ip~~l~~l~~-L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N--------~l~~~ip~~l  860 (979)
                           +.|+|++|.|++.+|..+..+.. +..|+|++|.++|.+|..      |+.|++++|        .+.+.++..+
T Consensus       319 -----~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~  387 (727)
T 4b8c_D          319 -----QFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLA  387 (727)
T ss_dssp             -----CCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------------------------------
T ss_pred             -----cEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchh
Confidence                 78999999999999988865432 234789999999998864      556677777        4555555566


Q ss_pred             CCCCCCCEEEccCCcccccC
Q 042359          861 SSLTFLNHLNLSNNNLTGKI  880 (979)
Q Consensus       861 ~~l~~L~~L~ls~N~l~g~i  880 (979)
                      .++..+....+++|-+.+..
T Consensus       388 ~~l~~~~~~~ls~Nil~~~~  407 (727)
T 4b8c_D          388 TDLAKRTFTVLSYNTLCQHY  407 (727)
T ss_dssp             --------------CCCGGG
T ss_pred             hcccccceeeeecccccccc
Confidence            67777888889999887543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.68  E-value=3.8e-17  Score=172.29  Aligned_cols=80  Identities=19%  Similarity=0.387  Sum_probs=62.5

Q ss_pred             eeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccC
Q 042359          794 VRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSN  873 (979)
Q Consensus       794 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~  873 (979)
                      |+.|+|++|++++ +| .++.+++|+.|+|++|++++ +| .++.+++|+.|+|++|++++.  ..+..+++|++|++++
T Consensus       108 L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~  181 (263)
T 1xeu_A          108 LSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTG  181 (263)
T ss_dssp             CCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEE
T ss_pred             ccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCC
Confidence            3677888887775 33 47788888888888888885 34 578888888888888888866  6678888888888888


Q ss_pred             Cccccc
Q 042359          874 NNLTGK  879 (979)
Q Consensus       874 N~l~g~  879 (979)
                      |++++.
T Consensus       182 N~~~~~  187 (263)
T 1xeu_A          182 QKCVNE  187 (263)
T ss_dssp             EEEECC
T ss_pred             CcccCC
Confidence            888765

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.67  E-value=1.4e-16  Score=160.39  Aligned_cols=156  Identities=21%  Similarity=0.269  Sum_probs=110.0

Q ss_pred             ccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhcc
Q 042359          621 WMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRM  700 (979)
Q Consensus       621 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L  700 (979)
                      ...+++|++|++++|.++ .+| .+..+++|++|++++|.++.  +..+..+++|++|++++|++++..|          
T Consensus        40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~----------  105 (197)
T 4ezg_A           40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKI----------  105 (197)
T ss_dssp             HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGS----------
T ss_pred             hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccC----------
Confidence            356789999999999998 677 68999999999999997753  3467777888888877777765434          


Q ss_pred             ceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEee
Q 042359          701 VVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVS  780 (979)
Q Consensus       701 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  780 (979)
                                     ..++.+++|+.|++++|++++..|..+..++.|                                
T Consensus       106 ---------------~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L--------------------------------  138 (197)
T 4ezg_A          106 ---------------PNLSGLTSLTLLDISHSAHDDSILTKINTLPKV--------------------------------  138 (197)
T ss_dssp             ---------------CCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSC--------------------------------
T ss_pred             ---------------hhhcCCCCCCEEEecCCccCcHhHHHHhhCCCC--------------------------------
Confidence                           344555666666666666665555555544444                                


Q ss_pred             cCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccc
Q 042359          781 KGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSG  854 (979)
Q Consensus       781 ~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~  854 (979)
                                    +.|+|++|++.+.+| .+..+++|+.|++++|++++ ++ .+..+++|+.|++++|++.+
T Consensus       139 --------------~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          139 --------------NSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             --------------CEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             --------------CEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence                          566666666333555 57778888888888888884 44 67888888888888888764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.67  E-value=1.5e-16  Score=176.48  Aligned_cols=177  Identities=24%  Similarity=0.250  Sum_probs=140.7

Q ss_pred             EEEeecccCCCCCCccCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCC
Q 042359          556 ILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNN  635 (979)
Q Consensus       556 ~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N  635 (979)
                      .++++++.++......+..++.|++++|.+++..+..+.   ..+++|+.|+|++|++++..+..|..+++|++|+|++|
T Consensus        22 ~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~---~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           22 ILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTP---TRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             EEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSS---SCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhh---hcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            445555555443334456788888888888876554332   15789999999999999887888999999999999999


Q ss_pred             cccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHH---HhhhccceeeccCCcccC
Q 042359          636 KFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIG---ERFSRMVVLILRSNKFHG  712 (979)
Q Consensus       636 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~---~~l~~L~~L~L~~n~l~~  712 (979)
                      ++++..+..|..+++|++|+|++|++++..|..|.++++|+.|+|++|+++ .+|..++   ..+++|+.|+|++|++++
T Consensus        99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A           99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence            998777778899999999999999999888889999999999999999998 5776654   358899999999999986


Q ss_pred             CCCccccCCCC--ccEEEccCCcccc
Q 042359          713 PLPTGLCDLAF--LQILDIADNNLSG  736 (979)
Q Consensus       713 ~~p~~l~~l~~--L~~L~Ls~n~l~~  736 (979)
                      ..+..+..++.  ++.|++++|++..
T Consensus       178 l~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          178 LPLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             CCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             cCHHHhhhccHhhcceEEecCCCccC
Confidence            66667777776  4889999998863

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.65  E-value=1.5e-16  Score=159.05  Aligned_cols=132  Identities=20%  Similarity=0.292  Sum_probs=105.5

Q ss_pred             CEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCc-cccCCCCccEEEccCCccccccCcchhhcccCcccccc
Q 042359          676 ESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPT-GLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSF  754 (979)
Q Consensus       676 ~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~  754 (979)
                      +++++++|.++ .+|..+.   .+++.|++++|++++..+. .+..+++|+.|++++|++++..|..+.+++.|      
T Consensus        11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------   80 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI------   80 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC------
T ss_pred             CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccC------
Confidence            45666666664 5665443   3677777777777655554 37788888888888888888778777766665      


Q ss_pred             cccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCC
Q 042359          755 TRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPE  834 (979)
Q Consensus       755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~  834 (979)
                                                              +.|+|++|++++..|..|+.+++|+.|+|++|++++.+|.
T Consensus        81 ----------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  120 (192)
T 1w8a_A           81 ----------------------------------------QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG  120 (192)
T ss_dssp             ----------------------------------------CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTT
T ss_pred             ----------------------------------------CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHH
Confidence                                                    7889999999988888899999999999999999999999


Q ss_pred             CCCccCCCCEEECcCCcccccCC
Q 042359          835 SIGVMRSLESIDFSANQLSGEIP  857 (979)
Q Consensus       835 ~~~~l~~L~~LdLs~N~l~~~ip  857 (979)
                      .++.+++|++|+|++|++++..+
T Consensus       121 ~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A          121 SFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             SSTTCTTCCEEECTTCCBCCSGG
T ss_pred             HhhcCCCCCEEEeCCCCccCcCc
Confidence            99999999999999999998765

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.65  E-value=5.3e-16  Score=163.50  Aligned_cols=128  Identities=25%  Similarity=0.291  Sum_probs=70.6

Q ss_pred             cccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccccCCC
Q 042359          118 SLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLS  197 (979)
Q Consensus       118 ~l~~l~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~  197 (979)
                      .+.++++|++|++++|.++.  +| .++.+++|++|+|++|++++..|  ++++++|++|++++|++..++...   . +
T Consensus        36 ~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~---~-~  106 (263)
T 1xeu_A           36 SQKELSGVQNFNGDNSNIQS--LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIP---S-A  106 (263)
T ss_dssp             CHHHHTTCSEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCC---C-S
T ss_pred             chhhcCcCcEEECcCCCccc--ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCccc---c-C
Confidence            45666677777777776664  33 46666777777777777664433  666677777777776666554422   1 5


Q ss_pred             CCCEEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCC
Q 042359          198 FLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFD  260 (979)
Q Consensus       198 ~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  260 (979)
                      +|++|++++|.+++..    .+..+++|++|++++|+++++.  .+..+++|++|++++|.++
T Consensus       107 ~L~~L~L~~N~l~~~~----~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~  163 (263)
T 1xeu_A          107 CLSRLFLDNNELRDTD----SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEIT  163 (263)
T ss_dssp             SCCEEECCSSCCSBSG----GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCC
T ss_pred             cccEEEccCCccCCCh----hhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCc
Confidence            5555555555554431    2344444444444444444432  3444444444444444443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.60  E-value=5.9e-15  Score=147.37  Aligned_cols=130  Identities=23%  Similarity=0.344  Sum_probs=109.3

Q ss_pred             ceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEee
Q 042359          701 VVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVS  780 (979)
Q Consensus       701 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  780 (979)
                      +.+++++|.++ .+|..+.  ++|+.|++++|+++ .+|..+.+++.|                                
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L--------------------------------   56 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHL--------------------------------   56 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTC--------------------------------
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCC--------------------------------
Confidence            45666677666 4555443  57888999999887 677766666555                                


Q ss_pred             cCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCC
Q 042359          781 KGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESM  860 (979)
Q Consensus       781 ~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l  860 (979)
                                    +.|||++|++++..|..|.++++|+.|+|++|++++..|..|..+++|+.|+|++|++++..+..+
T Consensus        57 --------------~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~  122 (193)
T 2wfh_A           57 --------------TLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAF  122 (193)
T ss_dssp             --------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTT
T ss_pred             --------------CEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhh
Confidence                          789999999998888889999999999999999998888899999999999999999997777789


Q ss_pred             CCCCCCCEEEccCCcccccC
Q 042359          861 SSLTFLNHLNLSNNNLTGKI  880 (979)
Q Consensus       861 ~~l~~L~~L~ls~N~l~g~i  880 (979)
                      ..+++|++|++++|++.+..
T Consensus       123 ~~l~~L~~L~L~~N~~~C~c  142 (193)
T 2wfh_A          123 NDLSALSHLAIGANPLYCDC  142 (193)
T ss_dssp             TTCTTCCEEECCSSCEECSG
T ss_pred             hcCccccEEEeCCCCeecCC
Confidence            99999999999999998753

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.58  E-value=8.6e-15  Score=144.40  Aligned_cols=134  Identities=19%  Similarity=0.215  Sum_probs=104.9

Q ss_pred             cceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEe
Q 042359          700 MVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVV  779 (979)
Q Consensus       700 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  779 (979)
                      .+.+++++|+++ .+|..+  .++|+.|++++|++++..+..+..++.|                               
T Consensus         9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L-------------------------------   54 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQL-------------------------------   54 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTC-------------------------------
T ss_pred             CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccc-------------------------------
Confidence            345666666665 344333  2577888888888875555555555544                               


Q ss_pred             ecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCC
Q 042359          780 SKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPES  859 (979)
Q Consensus       780 ~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~  859 (979)
                                     +.|++++|++++..+..++.+++|+.|+|++|++++..+..++.+++|++|+|++|++++..+..
T Consensus        55 ---------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~  119 (177)
T 2o6r_A           55 ---------------TKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGI  119 (177)
T ss_dssp             ---------------SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred             ---------------cEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHH
Confidence                           78888888888666677889999999999999999877777899999999999999999766667


Q ss_pred             CCCCCCCCEEEccCCcccccCCC
Q 042359          860 MSSLTFLNHLNLSNNNLTGKIPS  882 (979)
Q Consensus       860 l~~l~~L~~L~ls~N~l~g~ip~  882 (979)
                      +..+++|++|++++|+++|.+|.
T Consensus       120 ~~~l~~L~~L~l~~N~~~~~~~~  142 (177)
T 2o6r_A          120 FDRLTSLQKIWLHTNPWDCSCPR  142 (177)
T ss_dssp             TTTCTTCCEEECCSSCBCCCHHH
T ss_pred             hcCCcccCEEEecCCCeeccCcc
Confidence            78899999999999999988763

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.57  E-value=1.9e-15  Score=147.69  Aligned_cols=83  Identities=19%  Similarity=0.238  Sum_probs=41.1

Q ss_pred             eEEecccCcccccccccccCCCCCCEEeCCCCcceec-cCCCCCccCCCCEEECcCCcccccCC---CCCCCCCCCCEEE
Q 042359          795 RMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGR-IPESIGVMRSLESIDFSANQLSGEIP---ESMSSLTFLNHLN  870 (979)
Q Consensus       795 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~-ip~~~~~l~~L~~LdLs~N~l~~~ip---~~l~~l~~L~~L~  870 (979)
                      +.|+|++|++++.+|..++.+++|+.|+|++|++++. .+..++.+++|+.|++++|++++..+   ..+..+++|++||
T Consensus        74 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~  153 (168)
T 2ell_A           74 KKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD  153 (168)
T ss_dssp             CEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEET
T ss_pred             CEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEec
Confidence            3444444444444444444455555555555555532 11445555555555555555554333   2455555555555


Q ss_pred             ccCCccc
Q 042359          871 LSNNNLT  877 (979)
Q Consensus       871 ls~N~l~  877 (979)
                      +++|.+.
T Consensus       154 l~~n~~~  160 (168)
T 2ell_A          154 GYDREDQ  160 (168)
T ss_dssp             TEETTSC
T ss_pred             CCCCChh
Confidence            5555544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.57  E-value=5.4e-15  Score=144.52  Aligned_cols=138  Identities=19%  Similarity=0.231  Sum_probs=107.4

Q ss_pred             CCCCCEEeccCCccc-ccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcc
Q 042359          672 CTALESLDVGENEFV-GNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVT  750 (979)
Q Consensus       672 l~~L~~L~L~~N~l~-~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~  750 (979)
                      .++|+.|++++|.++ +.+|..+. .+++|+.|++++|.+++.  ..+..+++|+.|++++|++++.+|..+.+++.|  
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L--   97 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTA-EFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL--   97 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCG-GGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC--
T ss_pred             cccCCEEECCCCCCChhhHHHHHH-hCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC--
Confidence            356666677776665 56666554 577777777777777755  678888999999999999987777777666655  


Q ss_pred             cccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccc-cccccCCCCCCEEeCCCCcce
Q 042359          751 ACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKI-PLEVTNLKALQSLNFSYNSFT  829 (979)
Q Consensus       751 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~i-p~~l~~l~~L~~L~Ls~N~l~  829 (979)
                                                                  +.|+|++|++++.. +..++.+++|+.|++++|.++
T Consensus        98 --------------------------------------------~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~  133 (168)
T 2ell_A           98 --------------------------------------------THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT  133 (168)
T ss_dssp             --------------------------------------------CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG
T ss_pred             --------------------------------------------CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCc
Confidence                                                        78999999998642 378899999999999999999


Q ss_pred             eccC---CCCCccCCCCEEECcCCcccccCCCC
Q 042359          830 GRIP---ESIGVMRSLESIDFSANQLSGEIPES  859 (979)
Q Consensus       830 ~~ip---~~~~~l~~L~~LdLs~N~l~~~ip~~  859 (979)
                      +..+   ..+..+++|+.||+++|.+. .+|+.
T Consensus       134 ~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~  165 (168)
T 2ell_A          134 NLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS  165 (168)
T ss_dssp             TSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred             chHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence            5444   37889999999999999987 45554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.57  E-value=1.8e-15  Score=144.58  Aligned_cols=129  Identities=19%  Similarity=0.235  Sum_probs=96.7

Q ss_pred             hhccceeeccCCccc-CCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeee
Q 042359          697 FSRMVVLILRSNKFH-GPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEK  775 (979)
Q Consensus       697 l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  775 (979)
                      .++++.|++++|.++ +.+|..+..+++|+.|++++|.+++.  ..+++++.                            
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~----------------------------   65 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNK----------------------------   65 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTT----------------------------
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCC----------------------------
Confidence            456777777777777 67777777788888888888877644  33333333                            


Q ss_pred             eEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceec-cCCCCCccCCCCEEECcCCcccc
Q 042359          776 ASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGR-IPESIGVMRSLESIDFSANQLSG  854 (979)
Q Consensus       776 ~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~-ip~~~~~l~~L~~LdLs~N~l~~  854 (979)
                                        |+.|+|++|++++.+|..++.+++|+.|++++|++++. .|..++.+++|++|++++|++++
T Consensus        66 ------------------L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~  127 (149)
T 2je0_A           66 ------------------LKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN  127 (149)
T ss_dssp             ------------------CCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred             ------------------CCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc
Confidence                              37788888888877888777788888888888888863 44778888888888888888886


Q ss_pred             cCC---CCCCCCCCCCEEEccC
Q 042359          855 EIP---ESMSSLTFLNHLNLSN  873 (979)
Q Consensus       855 ~ip---~~l~~l~~L~~L~ls~  873 (979)
                      ..+   ..+..+++|++||+++
T Consensus       128 ~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          128 LNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             STTHHHHHHHHCTTCCEETTBC
T ss_pred             hHHHHHHHHHHCCCcccccCCC
Confidence            655   4678888888888763

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.56  E-value=2.3e-15  Score=164.76  Aligned_cols=89  Identities=16%  Similarity=0.191  Sum_probs=43.1

Q ss_pred             CcEEECcCCcCccccccccCCCCCCcEEeccCCcCcccCcccccCCCCCC-EEEcCCCcCccccChhhhcCCCCCcEEEc
Q 042359          385 LESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLR-VLRINDNKLNGTLSAIHFANLTKLSWFRV  463 (979)
Q Consensus       385 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~-~L~L~~n~l~~~l~~~~~~~l~~L~~L~L  463 (979)
                      |+.+++++|+++...+..|.++++|+++++.+| ++.+.+.+|.++++|+ .+++.+ .++ .++...|.++++|+.+++
T Consensus       228 L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~l~l  304 (329)
T 3sb4_A          228 LVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRYVLA  304 (329)
T ss_dssp             CCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEEEEE
T ss_pred             CeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCEEEe
Confidence            555555555554444444555555555555554 4444444455555555 555544 333 444444555555555555


Q ss_pred             cCCcccccccCCC
Q 042359          464 DGNKLTLGVKHDW  476 (979)
Q Consensus       464 ~~n~l~~~~~~~~  476 (979)
                      +.|.++.+....|
T Consensus       305 ~~n~i~~I~~~aF  317 (329)
T 3sb4_A          305 TGDKITTLGDELF  317 (329)
T ss_dssp             CSSCCCEECTTTT
T ss_pred             CCCccCccchhhh
Confidence            4444444433333

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.55  E-value=5.8e-15  Score=161.62  Aligned_cols=219  Identities=14%  Similarity=0.101  Sum_probs=123.0

Q ss_pred             CCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccc----cccccccccCCCCC
Q 042359          600 TKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRL----SGNILVSLKNCTAL  675 (979)
Q Consensus       600 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l----~~~~p~~l~~l~~L  675 (979)
                      +++|+.+++.+ .+...-+.+|.+|++|+.+++++|.+....+..|..+.++..+....+..    .......|.++..|
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L  178 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL  178 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence            67777777777 66655556677777777777777777655566676666666666555321    11223345556666


Q ss_pred             C-EEeccCCcccccCChhHHHh---hhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCccc
Q 042359          676 E-SLDVGENEFVGNIPTWIGER---FSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTA  751 (979)
Q Consensus       676 ~-~L~L~~N~l~~~ip~~~~~~---l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~  751 (979)
                      + .+++...   +.++..++..   ..++..+.+.++-.......-...+++|+.+++++|+++..-+..|.++++|   
T Consensus       179 ~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L---  252 (329)
T 3sb4_A          179 ETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL---  252 (329)
T ss_dssp             EEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC---
T ss_pred             ceeEEecCC---CcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC---
Confidence            5 4444332   1233333211   2334444444331110000001125667777777666664333445555544   


Q ss_pred             ccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCC-EEeCCCCccee
Q 042359          752 CSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQ-SLNFSYNSFTG  830 (979)
Q Consensus       752 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~-~L~Ls~N~l~~  830 (979)
                                                                 +.|+|++| ++..-+..|.++++|+ .+++++ +++.
T Consensus       253 -------------------------------------------~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~  287 (329)
T 3sb4_A          253 -------------------------------------------LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTA  287 (329)
T ss_dssp             -------------------------------------------CEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCE
T ss_pred             -------------------------------------------CEEECCcc-cceehHHHhhCChhccEEEEEcc-cceE
Confidence                                                       56666666 5544455667777777 777766 5664


Q ss_pred             ccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEE
Q 042359          831 RIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLN  870 (979)
Q Consensus       831 ~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~  870 (979)
                      .-+.+|.++++|+.|++++|+++..-+..|.++++|+.++
T Consensus       288 I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          288 IEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             ECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             EchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            5556677777777777777777766666677777776664

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.51  E-value=4.4e-14  Score=140.99  Aligned_cols=129  Identities=20%  Similarity=0.296  Sum_probs=97.3

Q ss_pred             CEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCccccccc
Q 042359          676 ESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFT  755 (979)
Q Consensus       676 ~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~  755 (979)
                      +++++++|.++ .+|..+.   ++++.|++++|+++ .+|..+..+++|+.|++++|++++..|..|.+++.|       
T Consensus        13 ~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L-------   80 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP---RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL-------   80 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC---TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC-------
T ss_pred             CEEEcCCCCCC-cCCCCCC---CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCC-------
Confidence            34555555554 4554332   45666666666666 566677777888888888888876666666666555       


Q ss_pred             ccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCC
Q 042359          756 RSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPES  835 (979)
Q Consensus       756 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~  835 (979)
                                                             +.|||++|++++..|..|..+++|+.|+|++|++++..+..
T Consensus        81 ---------------------------------------~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~  121 (193)
T 2wfh_A           81 ---------------------------------------LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGA  121 (193)
T ss_dssp             ---------------------------------------CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTT
T ss_pred             ---------------------------------------CEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhh
Confidence                                                   78888888888877888999999999999999999766667


Q ss_pred             CCccCCCCEEECcCCccccc
Q 042359          836 IGVMRSLESIDFSANQLSGE  855 (979)
Q Consensus       836 ~~~l~~L~~LdLs~N~l~~~  855 (979)
                      |..+++|+.|+|++|.+.+.
T Consensus       122 ~~~l~~L~~L~L~~N~~~C~  141 (193)
T 2wfh_A          122 FNDLSALSHLAIGANPLYCD  141 (193)
T ss_dssp             TTTCTTCCEEECCSSCEECS
T ss_pred             hhcCccccEEEeCCCCeecC
Confidence            99999999999999999764

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.50  E-value=6.2e-14  Score=138.23  Aligned_cols=132  Identities=19%  Similarity=0.216  Sum_probs=101.9

Q ss_pred             CEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCccccccc
Q 042359          676 ESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFT  755 (979)
Q Consensus       676 ~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~  755 (979)
                      +.+++++|.++ .+|..+   .++|+.|++++|++++..+..+..+++|+.|++++|++++..+..+..++.|       
T Consensus        10 ~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-------   78 (177)
T 2o6r_A           10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL-------   78 (177)
T ss_dssp             TEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC-------
T ss_pred             CEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCcc-------
Confidence            45666666655 455433   3567777777777776666667788888888888888875555555555554       


Q ss_pred             ccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCC
Q 042359          756 RSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPES  835 (979)
Q Consensus       756 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~  835 (979)
                                                             +.|+|++|++++..+..++.+++|+.|+|++|++++..+..
T Consensus        79 ---------------------------------------~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~  119 (177)
T 2o6r_A           79 ---------------------------------------TILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGI  119 (177)
T ss_dssp             ---------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred             ---------------------------------------CEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHH
Confidence                                                   78999999999777777899999999999999999766666


Q ss_pred             CCccCCCCEEECcCCcccccCC
Q 042359          836 IGVMRSLESIDFSANQLSGEIP  857 (979)
Q Consensus       836 ~~~l~~L~~LdLs~N~l~~~ip  857 (979)
                      +..+++|+.|+|++|++++..|
T Consensus       120 ~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          120 FDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             TTTCTTCCEEECCSSCBCCCHH
T ss_pred             hcCCcccCEEEecCCCeeccCc
Confidence            7889999999999999997665

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.49  E-value=2.2e-14  Score=136.92  Aligned_cols=127  Identities=22%  Similarity=0.230  Sum_probs=65.3

Q ss_pred             CcccEEeccCcccc-ccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEe
Q 042359          601 KSLNALQLNDNYLN-GELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLD  679 (979)
Q Consensus       601 ~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  679 (979)
                      ++|+.|++++|.+. +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            44555555555555 45555555555555555555555533  4455555555555555555554555554555555555


Q ss_pred             ccCCccccc-CChhHHHhhhccceeeccCCcccCCCC---ccccCCCCccEEEcc
Q 042359          680 VGENEFVGN-IPTWIGERFSRMVVLILRSNKFHGPLP---TGLCDLAFLQILDIA  730 (979)
Q Consensus       680 L~~N~l~~~-ip~~~~~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~Ls  730 (979)
                      +++|++++. .|..+. .+++|+.|++++|++++..+   ..+..+++|+.|+++
T Consensus        95 ls~N~i~~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLK-KLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTSCCCSHHHHGGGG-GCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCcCCChHHHHHHh-hCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            555555431 123333 44555555555555554333   244455555555544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.48  E-value=5.5e-16  Score=156.07  Aligned_cols=132  Identities=20%  Similarity=0.275  Sum_probs=78.0

Q ss_pred             hHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCccccee
Q 042359          692 WIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVI  771 (979)
Q Consensus       692 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  771 (979)
                      .+. .+++|+.|++++|++++ +| .+..+++|+.|++++|+++ .+|..+..++.|                       
T Consensus        43 ~~~-~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L-----------------------   95 (198)
T 1ds9_A           43 TLS-TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL-----------------------   95 (198)
T ss_dssp             HHH-HTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC-----------------------
T ss_pred             HHh-cCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC-----------------------
Confidence            443 45566666666666554 44 5555666666666666665 445444433333                       


Q ss_pred             eeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccC-CCCCccCCCCEEECcCC
Q 042359          772 LVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIP-ESIGVMRSLESIDFSAN  850 (979)
Q Consensus       772 ~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip-~~~~~l~~L~~LdLs~N  850 (979)
                                             +.|+|++|++++ +| .++.+++|+.|++++|++++..+ ..+..+++|++|++++|
T Consensus        96 -----------------------~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N  150 (198)
T 1ds9_A           96 -----------------------EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             -----------------------SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred             -----------------------CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence                                   566666666664 44 46666667777777776663222 35566667777777777


Q ss_pred             cccccCCCC----------CCCCCCCCEEEccCCccc
Q 042359          851 QLSGEIPES----------MSSLTFLNHLNLSNNNLT  877 (979)
Q Consensus       851 ~l~~~ip~~----------l~~l~~L~~L~ls~N~l~  877 (979)
                      ++++.+|..          +..+++|++||  +|+++
T Consensus       151 ~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          151 PLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             ccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            776665553          56667777766  55554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.44  E-value=2.2e-15  Score=151.58  Aligned_cols=162  Identities=16%  Similarity=0.218  Sum_probs=93.4

Q ss_pred             ccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhcc
Q 042359          621 WMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRM  700 (979)
Q Consensus       621 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L  700 (979)
                      +.....++.++++.+.+++.+|.                 ++ .+|..+..+++|++|++++|.+++ +| .+. .+++|
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~-----------------l~-~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~-~l~~L   72 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPP-----------------IE-KMDATLSTLKACKHLALSTNNIEK-IS-SLS-GMENL   72 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTT-----------------CC-CCHHHHHHTTTCSEEECSEEEESC-CC-CHH-HHTTC
T ss_pred             HHhcccccCcchheeEeccccCc-----------------Hh-hhhHHHhcCCCCCEEECCCCCCcc-cc-ccc-cCCCC
Confidence            33445566666666666665554                 00 111244444555555555555443 44 333 45555


Q ss_pred             ceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEee
Q 042359          701 VVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVS  780 (979)
Q Consensus       701 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  780 (979)
                      +.|++++|+++ .+|..+..+++|+.|++++|++++ +| .+..++.|                                
T Consensus        73 ~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L--------------------------------  117 (198)
T 1ds9_A           73 RILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL--------------------------------  117 (198)
T ss_dssp             CEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS--------------------------------
T ss_pred             CEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC--------------------------------
Confidence            55555555555 344444445566666666666653 33 34444433                                


Q ss_pred             cCccchhhhhccceeEEecccCccccccc-ccccCCCCCCEEeCCCCcceeccCCC----------CCccCCCCEEECcC
Q 042359          781 KGEMVDYEDILNLVRMIDISRNNFSGKIP-LEVTNLKALQSLNFSYNSFTGRIPES----------IGVMRSLESIDFSA  849 (979)
Q Consensus       781 ~~~~~~~~~~~~~L~~LdLs~N~l~~~ip-~~l~~l~~L~~L~Ls~N~l~~~ip~~----------~~~l~~L~~LdLs~  849 (979)
                                    +.|++++|++++..+ ..+..+++|+.|++++|.+++.+|..          +..+++|+.||  +
T Consensus       118 --------------~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~  181 (198)
T 1ds9_A          118 --------------RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--G  181 (198)
T ss_dssp             --------------SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--C
T ss_pred             --------------CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--C
Confidence                          677777777774322 46777888888888888888777664          77788888887  6


Q ss_pred             Ccccc
Q 042359          850 NQLSG  854 (979)
Q Consensus       850 N~l~~  854 (979)
                      |.++.
T Consensus       182 ~~i~~  186 (198)
T 1ds9_A          182 MPVDV  186 (198)
T ss_dssp             GGGTT
T ss_pred             cccCH
Confidence            66653

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.44  E-value=2.8e-13  Score=132.20  Aligned_cols=89  Identities=19%  Similarity=0.215  Sum_probs=81.5

Q ss_pred             eeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccC
Q 042359          794 VRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSN  873 (979)
Q Consensus       794 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~  873 (979)
                      ++.|+|++|+|++..|..|+++++|+.|+|++|+|++..|..|..+++|++|+|++|+|++..|..+..+++|++|+|++
T Consensus        32 l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  111 (170)
T 3g39_A           32 TQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLN  111 (170)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCC
Confidence            47899999999988899999999999999999999977777789999999999999999987778899999999999999


Q ss_pred             CcccccCCC
Q 042359          874 NNLTGKIPS  882 (979)
Q Consensus       874 N~l~g~ip~  882 (979)
                      |++++..+.
T Consensus       112 N~~~c~c~~  120 (170)
T 3g39_A          112 NPWDCACSD  120 (170)
T ss_dssp             SCBCTTBGG
T ss_pred             CCCCCCchh
Confidence            999987653

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.42  E-value=2e-13  Score=134.30  Aligned_cols=81  Identities=14%  Similarity=0.169  Sum_probs=43.7

Q ss_pred             eEEecccCcccccccccccCCCCCCEEeCCCCcceeccCC--CCCccCCCCEEECcCCcccccCCCC----CCCCCCCCE
Q 042359          795 RMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPE--SIGVMRSLESIDFSANQLSGEIPES----MSSLTFLNH  868 (979)
Q Consensus       795 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~--~~~~l~~L~~LdLs~N~l~~~ip~~----l~~l~~L~~  868 (979)
                      +.|+|++|++++..|..++.+++|+.|+|++|+++ .+|.  .++.+++|+.|++++|+++ .+|..    +..+++|++
T Consensus        67 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~  144 (176)
T 1a9n_A           67 KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRV  144 (176)
T ss_dssp             CEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSE
T ss_pred             CEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccce
Confidence            44444444444332233355555556666666554 3444  5555666666666666665 34443    556666666


Q ss_pred             EEccCCccc
Q 042359          869 LNLSNNNLT  877 (979)
Q Consensus       869 L~ls~N~l~  877 (979)
                      ||+++|...
T Consensus       145 Ld~~~n~~~  153 (176)
T 1a9n_A          145 LDFQKVKLK  153 (176)
T ss_dssp             ETTEECCHH
T ss_pred             eCCCcCCHH
Confidence            666666554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.41  E-value=1.5e-13  Score=135.27  Aligned_cols=136  Identities=17%  Similarity=0.197  Sum_probs=106.8

Q ss_pred             cccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhccc
Q 042359          668 SLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTG  747 (979)
Q Consensus       668 ~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  747 (979)
                      .+.++++|+.|++++|+++ .+|. +....++|+.|++++|.+++.  ..+..+++|+.|++++|++++..|..+..+++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   89 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   89 (176)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence            4567888999999999988 5664 332344899999999998865  67888899999999999988554444466555


Q ss_pred             CcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccc--cccCCCCCCEEeCCC
Q 042359          748 MVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPL--EVTNLKALQSLNFSY  825 (979)
Q Consensus       748 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~--~l~~l~~L~~L~Ls~  825 (979)
                      |                                              +.|+|++|+++ .+|.  .++.+++|+.|++++
T Consensus        90 L----------------------------------------------~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~  122 (176)
T 1a9n_A           90 L----------------------------------------------TELILTNNSLV-ELGDLDPLASLKSLTYLCILR  122 (176)
T ss_dssp             C----------------------------------------------CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCS
T ss_pred             C----------------------------------------------CEEECCCCcCC-cchhhHhhhcCCCCCEEEecC
Confidence            5                                              78999999986 5666  788899999999999


Q ss_pred             CcceeccCCC----CCccCCCCEEECcCCccccc
Q 042359          826 NSFTGRIPES----IGVMRSLESIDFSANQLSGE  855 (979)
Q Consensus       826 N~l~~~ip~~----~~~l~~L~~LdLs~N~l~~~  855 (979)
                      |.++ .+|..    ++.+++|+.||+++|.+...
T Consensus       123 N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~  155 (176)
T 1a9n_A          123 NPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKER  155 (176)
T ss_dssp             SGGG-GSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred             CCCC-CcHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence            9998 66764    88889999999999887643

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.40  E-value=8.1e-13  Score=129.29  Aligned_cols=88  Identities=22%  Similarity=0.246  Sum_probs=79.0

Q ss_pred             eeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccC
Q 042359          794 VRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSN  873 (979)
Q Consensus       794 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~  873 (979)
                      |+.|+|++|++++..|..|+++++|+.|+|++|+|++..+..|+.+++|++|||++|+|++..|..+..+++|++|+|++
T Consensus        35 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~  114 (174)
T 2r9u_A           35 KQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYN  114 (174)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred             CcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCC
Confidence            47899999999988899999999999999999999976666689999999999999999977667799999999999999


Q ss_pred             CcccccCC
Q 042359          874 NNLTGKIP  881 (979)
Q Consensus       874 N~l~g~ip  881 (979)
                      |++.+..+
T Consensus       115 N~~~c~~~  122 (174)
T 2r9u_A          115 NPWDCECR  122 (174)
T ss_dssp             SCBCTTBG
T ss_pred             CCcccccc
Confidence            99997654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.37  E-value=2.9e-11  Score=134.86  Aligned_cols=222  Identities=16%  Similarity=0.171  Sum_probs=124.3

Q ss_pred             CccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCccccCCCCCCEEeccCCcCcccCchhhccC
Q 042359          224 SLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRF  303 (979)
Q Consensus       224 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l  303 (979)
                      +|+.+.+.. .++.+...+|.++++|+.++++.|.++.          ++.....+.+|+.+.+..+ +.......|.++
T Consensus       158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~----------I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~  225 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITK----------LPASTFVYAGIEEVLLPVT-LKEIGSQAFLKT  225 (401)
T ss_dssp             CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSE----------ECTTTTTTCCCSEEECCTT-CCEECTTTTTTC
T ss_pred             CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceE----------echhhEeecccCEEEeCCc-hheehhhHhhCC
Confidence            355555543 4555555566666667777766666653          2222222466777777633 554555666677


Q ss_pred             CCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCcccccCCCCCCeeeccCccCCcccchhhhhccccccC
Q 042359          304 IHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSN  383 (979)
Q Consensus       304 ~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~  383 (979)
                      ++|+.+++..+ ++ .+...+|.+ .+|+.+.+..  .+.......|.++++|+.+.+.++.+....             
T Consensus       226 ~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~-------------  287 (401)
T 4fdw_A          226 SQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDP-------------  287 (401)
T ss_dssp             TTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCT-------------
T ss_pred             CCCCEEecCCC-cc-Ccccccccc-CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCc-------------
Confidence            77777777654 33 454556666 5677777744  344445566777777777777665443100             


Q ss_pred             CCcEEECcCCcCccccccccCCCCCCcEEeccCCcCcccCcccccCCCCCCEEEcCCCcCccccChhhhcCCCCCcEEEc
Q 042359          384 GLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRV  463 (979)
Q Consensus       384 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L  463 (979)
                                 .....+..|.++++|+.+++.+ .++.....+|.+|++|+.+.|..+ ++ .++...|.++ +|+.+++
T Consensus       288 -----------~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~-~I~~~aF~~~-~L~~l~l  352 (401)
T 4fdw_A          288 -----------EAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VT-QINFSAFNNT-GIKEVKV  352 (401)
T ss_dssp             -----------TCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CC-EECTTSSSSS-CCCEEEE
T ss_pred             -----------ccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-cc-EEcHHhCCCC-CCCEEEE
Confidence                       0012233455666666666663 355454555666666666666443 33 4555566666 6666666


Q ss_pred             cCCcccccccCCCCCc-ccccEEecccc
Q 042359          464 DGNKLTLGVKHDWIPP-FQLVALGLRNC  490 (979)
Q Consensus       464 ~~n~l~~~~~~~~~~~-~~L~~L~l~~~  490 (979)
                      .+|.+.......|... ..++.+.+..+
T Consensus       353 ~~n~~~~l~~~~F~~~~~~l~~l~vp~~  380 (401)
T 4fdw_A          353 EGTTPPQVFEKVWYGFPDDITVIRVPAE  380 (401)
T ss_dssp             CCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred             cCCCCcccccccccCCCCCccEEEeCHH
Confidence            6666555555555544 24555555443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.37  E-value=2.4e-11  Score=135.61  Aligned_cols=204  Identities=11%  Similarity=0.127  Sum_probs=114.1

Q ss_pred             CCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCcccccCCCCCCeee
Q 042359          281 SLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLN  360 (979)
Q Consensus       281 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~~l~~L~~L~  360 (979)
                      +|+.+.+.. .+....+..|.++++|+.+++..|.++ .++..+|. +.+|+.+.+..+  +.......|.++++|+.++
T Consensus       158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~  232 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFV-YAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIE  232 (401)
T ss_dssp             CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTT-TCCCSEEECCTT--CCEECTTTTTTCTTCCCEE
T ss_pred             CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEe-ecccCEEEeCCc--hheehhhHhhCCCCCCEEe
Confidence            455555543 344344445555555555555555554 34344444 355555555532  3434444555555666555


Q ss_pred             ccCccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCCCCcEEeccCCcCc-----ccCcccccCCCCCCE
Q 042359          361 LRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIV-----GLIPESLGQLSTLRV  435 (979)
Q Consensus       361 L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~-----~~~p~~l~~l~~L~~  435 (979)
                      +..+ +......    .+..  .+|+.+.+. +.++.....+|.++++|+.+++.+|.+.     ...+.+|.+|++|+.
T Consensus       233 l~~~-l~~I~~~----aF~~--~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~  304 (401)
T 4fdw_A          233 IPEN-VSTIGQE----AFRE--SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLAR  304 (401)
T ss_dssp             CCTT-CCEECTT----TTTT--CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCE
T ss_pred             cCCC-ccCcccc----cccc--CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCe
Confidence            5543 1111111    1111  226666663 3444555667888888888888877654     345567888888888


Q ss_pred             EEcCCCcCccccChhhhcCCCCCcEEEccCCcccccccCCCCCcccccEEecccccCCCCCChhhh
Q 042359          436 LRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLY  501 (979)
Q Consensus       436 L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~  501 (979)
                      +++.+ .+. .++...|.++++|+.+.+..+ ++.+...+|... +|+.+.+.++......+..+.
T Consensus       305 l~l~~-~i~-~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~  366 (401)
T 4fdw_A          305 FEIPE-SIR-ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWY  366 (401)
T ss_dssp             ECCCT-TCC-EECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCC
T ss_pred             EEeCC-ceE-EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccccccccc
Confidence            88874 454 677778888888888888554 555555555555 555555555544433333333

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.33  E-value=3.8e-12  Score=124.06  Aligned_cols=109  Identities=18%  Similarity=0.229  Sum_probs=87.5

Q ss_pred             cceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEe
Q 042359          700 MVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVV  779 (979)
Q Consensus       700 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  779 (979)
                      .+.+++++|.++ .+|..+.  ++|+.|++++|++++..|..+.+++.|                               
T Consensus        11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L-------------------------------   56 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQL-------------------------------   56 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTC-------------------------------
T ss_pred             CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccC-------------------------------
Confidence            456677777666 3555553  678888888888887777777766665                               


Q ss_pred             ecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCC
Q 042359          780 SKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIP  857 (979)
Q Consensus       780 ~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip  857 (979)
                                     +.|||++|+|++..|..|..+++|+.|+|++|+|++..|..|+.+++|+.|+|++|++++..+
T Consensus        57 ---------------~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           57 ---------------TRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             ---------------SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             ---------------CEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence                           788999999987777778999999999999999997777789999999999999999986543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.33  E-value=6.7e-11  Score=132.71  Aligned_cols=311  Identities=11%  Similarity=0.076  Sum_probs=163.8

Q ss_pred             cccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccccC
Q 042359          116 NPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSG  195 (979)
Q Consensus       116 ~~~l~~l~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~  195 (979)
                      ..+|.++++|+.+.+.. .++.+ -..+|.+|++|+.+++..+ ++..-...|.++.+|+.+.+..+ +..++... +.+
T Consensus        64 ~~AF~~c~~L~~i~lp~-~i~~I-~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a-F~~  138 (394)
T 4fs7_A           64 YAAFQGCRKVTEIKIPS-TVREI-GEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA-FKG  138 (394)
T ss_dssp             TTTTTTCTTEEEEECCT-TCCEE-CTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT-TTT
T ss_pred             HHHhhCCCCceEEEeCC-CccCc-chhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee-eec
Confidence            35688889999999974 46654 2567889999999999765 55445567888888988877654 33333322 333


Q ss_pred             CCCCCEEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCcc
Q 042359          196 LSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRG  275 (979)
Q Consensus       196 l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~  275 (979)
                      +..++..........+    ...+..+++|+.+.+..+ +..+....|..+.+|+.+++..+ ++.         .-...
T Consensus       139 ~~~~~~~~~~~~~~i~----~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~---------I~~~~  203 (394)
T 4fs7_A          139 CDFKEITIPEGVTVIG----DEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKI---------IRDYC  203 (394)
T ss_dssp             CCCSEEECCTTCCEEC----TTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCE---------ECTTT
T ss_pred             ccccccccCccccccc----hhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceE---------eCchh
Confidence            3333322222221111    134566677777777543 44555566677777777766554 221         11234


Q ss_pred             ccCCCCCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCcccccCCCC
Q 042359          276 LQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCN  355 (979)
Q Consensus       276 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~~l~~  355 (979)
                      +.++..|+.+.+..+..  .+.........|+.+.+.... . .+....+..+..|+.+.+..+  ........+..+..
T Consensus       204 F~~~~~L~~i~~~~~~~--~i~~~~~~~~~l~~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~~~--~~~i~~~~F~~~~~  277 (394)
T 4fs7_A          204 FAECILLENMEFPNSLY--YLGDFALSKTGVKNIIIPDSF-T-ELGKSVFYGCTDLESISIQNN--KLRIGGSLFYNCSG  277 (394)
T ss_dssp             TTTCTTCCBCCCCTTCC--EECTTTTTTCCCCEEEECTTC-C-EECSSTTTTCSSCCEEEECCT--TCEECSCTTTTCTT
T ss_pred             hccccccceeecCCCce--EeehhhcccCCCceEEECCCc-e-ecccccccccccceeEEcCCC--cceeeccccccccc
Confidence            55666666666655432  122233344566666665432 1 333455666667777666654  22233445555666


Q ss_pred             CCeeeccCccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCCCCcEEeccCCcCcccCcccccCCCCCCE
Q 042359          356 LKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRV  435 (979)
Q Consensus       356 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  435 (979)
                      ++.+......+...       .+..... |+.+.+..+ ++.....+|.++.+|+.+++.++ ++.....+|.+|++|+.
T Consensus       278 l~~~~~~~~~i~~~-------~F~~~~~-L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~  347 (394)
T 4fs7_A          278 LKKVIYGSVIVPEK-------TFYGCSS-LTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSN  347 (394)
T ss_dssp             CCEEEECSSEECTT-------TTTTCTT-CCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCE
T ss_pred             cceeccCceeeccc-------ccccccc-ccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCE
Confidence            66555544322110       1111122 455554432 33333344555555555555432 33333444555555555


Q ss_pred             EEcCCCcCccccChhhhcCCCCCcEEEcc
Q 042359          436 LRINDNKLNGTLSAIHFANLTKLSWFRVD  464 (979)
Q Consensus       436 L~L~~n~l~~~l~~~~~~~l~~L~~L~L~  464 (979)
                      +++..+ ++ .++...|.++++|+.+++.
T Consensus       348 i~lp~~-l~-~I~~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          348 INFPLS-LR-KIGANAFQGCINLKKVELP  374 (394)
T ss_dssp             ECCCTT-CC-EECTTTBTTCTTCCEEEEE
T ss_pred             EEECcc-cc-EehHHHhhCCCCCCEEEEC
Confidence            555443 32 4444455555555555544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.29  E-value=8.7e-12  Score=121.89  Aligned_cols=106  Identities=16%  Similarity=0.230  Sum_probs=83.4

Q ss_pred             ceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEee
Q 042359          701 VVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVS  780 (979)
Q Consensus       701 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  780 (979)
                      +.+++++|+++ .+|..+.  ++|+.|++++|++++..|..+.+++.|                                
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L--------------------------------   59 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNL--------------------------------   59 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTC--------------------------------
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCC--------------------------------
Confidence            45666666664 5565553  678888888888887777777766655                                


Q ss_pred             cCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCccccc
Q 042359          781 KGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGE  855 (979)
Q Consensus       781 ~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~  855 (979)
                                    +.|||++|+|++..+..|..+++|+.|+|++|+|++..+..|+.+++|+.|+|++|++...
T Consensus        60 --------------~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           60 --------------QQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             --------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             --------------CEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence                          7888888888866566678999999999999999976666699999999999999999854

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.28  E-value=1.7e-10  Score=129.34  Aligned_cols=221  Identities=12%  Similarity=0.128  Sum_probs=113.4

Q ss_pred             cccCCCCCCcEEeccCCcCcccCcccccCCCCCCEEEcCCCcCccccChhhhcCCCCCcEEEccCCcccccccCCCCCcc
Q 042359          401 DQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPF  480 (979)
Q Consensus       401 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  480 (979)
                      .+|.++++|+.+.+.++- ......+|.++++|+.+++..+ ++ .++...|.++..|+.+.+..+....  ...     
T Consensus       156 ~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~~~L~~i~~~~~~~~i--~~~-----  225 (394)
T 4fs7_A          156 EAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAECILLENMEFPNSLYYL--GDF-----  225 (394)
T ss_dssp             TTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTCTTCCBCCCCTTCCEE--CTT-----
T ss_pred             hhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ce-EeCchhhccccccceeecCCCceEe--ehh-----
Confidence            456677777777776543 3344456677777777777655 22 4555567777777666655543221  111     


Q ss_pred             cccEEecccccCCCCCChhhhCCCCccEEEccCCCCCCCCchHHHhcCCCccEEEcccCcCCCCCCCcccccCCcEEEee
Q 042359          481 QLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVY  560 (979)
Q Consensus       481 ~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~l~  560 (979)
                                         ......|+.+.+.... ..+ ....+..+..++.+.+..+...-....+..+.        
T Consensus       226 -------------------~~~~~~l~~i~ip~~~-~~i-~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~--------  276 (394)
T 4fs7_A          226 -------------------ALSKTGVKNIIIPDSF-TEL-GKSVFYGCTDLESISIQNNKLRIGGSLFYNCS--------  276 (394)
T ss_dssp             -------------------TTTTCCCCEEEECTTC-CEE-CSSTTTTCSSCCEEEECCTTCEECSCTTTTCT--------
T ss_pred             -------------------hcccCCCceEEECCCc-eec-ccccccccccceeEEcCCCcceeecccccccc--------
Confidence                               1122334444332211 111 11112233444444444332211111122222        


Q ss_pred             cccCCCCCCccCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCccccc
Q 042359          561 SNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGN  640 (979)
Q Consensus       561 ~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  640 (979)
                                   .++.+....+.+.    .   ..+..+.+|+.+.+.++ +...-..+|.++.+|+.+++.++ ++..
T Consensus       277 -------------~l~~~~~~~~~i~----~---~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I  334 (394)
T 4fs7_A          277 -------------GLKKVIYGSVIVP----E---KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEI  334 (394)
T ss_dssp             -------------TCCEEEECSSEEC----T---TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEE
T ss_pred             -------------ccceeccCceeec----c---ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEE
Confidence                         3333333322211    1   12234566666666544 33333456777777777777644 5544


Q ss_pred             CCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCC
Q 042359          641 LPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGEN  683 (979)
Q Consensus       641 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N  683 (979)
                      -..+|.++++|+.+.+..+ ++.....+|.+|++|+.+++..+
T Consensus       335 ~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          335 GKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             CTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             hHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            4567777778888877765 55455567778888888877654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.26  E-value=2e-13  Score=150.86  Aligned_cols=63  Identities=19%  Similarity=0.153  Sum_probs=32.7

Q ss_pred             CCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccc-----cCCCCccEEEccCCccc
Q 042359          673 TALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGL-----CDLAFLQILDIADNNLS  735 (979)
Q Consensus       673 ~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l-----~~l~~L~~L~Ls~n~l~  735 (979)
                      ++|++|+|++|.++..-...+...+++|+.|+|++|.++......+     ...++|+.|+|++|.++
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~  168 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLT  168 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCC
Confidence            4566666666665433333333345556666666665543322222     23456666666666664

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.17  E-value=4.6e-11  Score=131.75  Aligned_cols=84  Identities=19%  Similarity=0.219  Sum_probs=61.3

Q ss_pred             eEEeccc-CcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccC
Q 042359          795 RMIDISR-NNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSN  873 (979)
Q Consensus       795 ~~LdLs~-N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~  873 (979)
                      +.|+|++ |+|++..|..|+++++|+.|+|++|+|++.+|..|++|++|+.|||++|+|++..|..+..++ |+.|+|++
T Consensus        34 ~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~  112 (347)
T 2ifg_A           34 TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSG  112 (347)
T ss_dssp             SEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCS
T ss_pred             eEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeC
Confidence            6677775 777766667777777777777777777777777777777777777777777765555555555 77777777


Q ss_pred             Cccccc
Q 042359          874 NNLTGK  879 (979)
Q Consensus       874 N~l~g~  879 (979)
                      |+|.+.
T Consensus       113 N~~~c~  118 (347)
T 2ifg_A          113 NPLHCS  118 (347)
T ss_dssp             SCCCCC
T ss_pred             CCccCC
Confidence            777653

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.04  E-value=3.7e-11  Score=132.70  Aligned_cols=42  Identities=19%  Similarity=0.251  Sum_probs=20.1

Q ss_pred             cCCCCCCcEEeccCCcCcccC----cccccCCCCCCEEEcCCCcCc
Q 042359          403 LGQFKNIVTLDFANNSIVGLI----PESLGQLSTLRVLRINDNKLN  444 (979)
Q Consensus       403 l~~l~~L~~L~Ls~n~l~~~~----p~~l~~l~~L~~L~L~~n~l~  444 (979)
                      +...++|++|++++|.+++..    ...+...++|++|+|++|.+.
T Consensus       207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            344445555555555554321    122333455555555555554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.03  E-value=4.3e-10  Score=123.86  Aligned_cols=59  Identities=20%  Similarity=0.247  Sum_probs=37.2

Q ss_pred             eEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccc
Q 042359          795 RMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSG  854 (979)
Q Consensus       795 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~  854 (979)
                      +.|||++|+|++..|..|+++++|+.|||++|+|++..|..+..++ |+.|+|++|++..
T Consensus        59 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           59 RNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             SEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            5666666666666666666666666666666666654444444444 6666666666653

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.98  E-value=1.1e-08  Score=114.66  Aligned_cols=128  Identities=14%  Similarity=0.190  Sum_probs=60.8

Q ss_pred             ccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCC
Q 042359          597 INETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALE  676 (979)
Q Consensus       597 l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  676 (979)
                      +..++.|+.+.+.++... .-..+|.++++|+.+.+. +.++..-...|.++.+|+.+++..+ ++.....+|.+|++|+
T Consensus       261 F~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~  337 (394)
T 4gt6_A          261 FDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE  337 (394)
T ss_dssp             TTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred             eeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence            344556666665544322 223455556666666664 2333333445566666666666543 4433345566666666


Q ss_pred             EEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCC
Q 042359          677 SLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADN  732 (979)
Q Consensus       677 ~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  732 (979)
                      .+.+..+ ++ .|....+.++++|+.+++.++....   ..+..+..|+.+.+..+
T Consensus       338 ~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~  388 (394)
T 4gt6_A          338 RIAIPSS-VT-KIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPG  388 (394)
T ss_dssp             EEEECTT-CC-BCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC--------
T ss_pred             EEEECcc-cC-EEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCC
Confidence            6666433 32 4554444455566666555553321   23444555555555444

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.95  E-value=8.8e-08  Score=107.18  Aligned_cols=296  Identities=13%  Similarity=0.132  Sum_probs=139.3

Q ss_pred             ccccCCC-CCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCC---CCCCCccccCCCCCCceEecCCCccccCCcccc
Q 042359          117 PSLLDLK-HLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTR---IGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWW  192 (979)
Q Consensus       117 ~~l~~l~-~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~---i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~  192 (979)
                      .+|.+++ .|+.+.+..+ ++.+ -..+|.++.+|+.+.+..+.   ++..-...|.++.+|+.+.+..+ +..++... 
T Consensus        57 ~aF~~~~~~L~sI~iP~s-vt~I-g~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~a-  132 (394)
T 4gt6_A           57 RVFCNYKYVLTSVQIPDT-VTEI-GSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEA-  132 (394)
T ss_dssp             TTTTTCCSCCCEEEECTT-CCEE-CTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTT-
T ss_pred             hhccCCCCcCEEEEECCC-eeEE-hHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhh-
Confidence            4566664 5888888654 5554 35678888888888887663   44344556777788887776543 33333221 


Q ss_pred             ccCCCCCCEEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccC
Q 042359          193 LSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPI  272 (979)
Q Consensus       193 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~  272 (979)
                      +..+.+|+.+.+..                           .+..+....+..+.+|+.+.+..+ ++.          +
T Consensus       133 F~~c~~L~~i~lp~---------------------------~~~~I~~~~F~~c~~L~~i~~~~~-~~~----------I  174 (394)
T 4gt6_A          133 FHHCEELDTVTIPE---------------------------GVTSVADGMFSYCYSLHTVTLPDS-VTA----------I  174 (394)
T ss_dssp             TTTCTTCCEEECCT---------------------------TCCEECTTTTTTCTTCCEEECCTT-CCE----------E
T ss_pred             hhhhcccccccccc---------------------------eeeeecccceecccccccccccce-eeE----------e
Confidence            34445555554432                           223333334444444444444332 111          1


Q ss_pred             CccccCCCCCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCc-------------ccccccCccCEEecCCC
Q 042359          273 PRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDS-------------EALGNLTSISWLDLSLN  339 (979)
Q Consensus       273 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~-------------~~l~~l~~L~~L~L~~n  339 (979)
                      ........+|+.+.+..+- .......+..+.+++.......... .++.             ..+.....+..+.+.. 
T Consensus       175 ~~~aF~~~~l~~i~ip~~~-~~i~~~af~~c~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-  251 (394)
T 4gt6_A          175 EERAFTGTALTQIHIPAKV-TRIGTNAFSECFALSTITSDSESYP-AIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-  251 (394)
T ss_dssp             CTTTTTTCCCSEEEECTTC-CEECTTTTTTCTTCCEEEECCSSSC-BSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-
T ss_pred             ccccccccceeEEEECCcc-cccccchhhhccccceecccccccc-cccceeecccccccccccccccccccceEEcCC-
Confidence            1111112334444443321 1122233444444444433332221 0000             0011112222333322 


Q ss_pred             CCCcccCcccccCCCCCCeeeccCccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCCCCcEEeccCCcC
Q 042359          340 MGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSI  419 (979)
Q Consensus       340 ~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l  419 (979)
                       .+.......|..+..|+.+.+..+...  +..   ..+..... |+.+.+. +.++......|.++.+|+.+++..+ +
T Consensus       252 -~v~~i~~~aF~~c~~L~~i~lp~~~~~--I~~---~aF~~c~~-L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v  322 (394)
T 4gt6_A          252 -GVARIETHAFDSCAYLASVKMPDSVVS--IGT---GAFMNCPA-LQDIEFS-SRITELPESVFAGCISLKSIDIPEG-I  322 (394)
T ss_dssp             -TEEEECTTTTTTCSSCCEEECCTTCCE--ECT---TTTTTCTT-CCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-C
T ss_pred             -cceEcccceeeecccccEEecccccce--ecC---cccccccc-cccccCC-CcccccCceeecCCCCcCEEEeCCc-c
Confidence             122222334555555555555432211  100   01111222 5555553 2233333445666677777776643 4


Q ss_pred             cccCcccccCCCCCCEEEcCCCcCccccChhhhcCCCCCcEEEccCCcc
Q 042359          420 VGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKL  468 (979)
Q Consensus       420 ~~~~p~~l~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l  468 (979)
                      +.....+|.+|++|+.+.+..+ ++ .+....|.++++|+.+++.++..
T Consensus       323 ~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~~  369 (394)
T 4gt6_A          323 TQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNNIEYSGSRS  369 (394)
T ss_dssp             CEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEESSCHH
T ss_pred             cEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEECCcee
Confidence            4444556667777777776543 33 55666677777777776666543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.68  E-value=8.3e-09  Score=112.72  Aligned_cols=81  Identities=16%  Similarity=0.270  Sum_probs=46.1

Q ss_pred             ceeEEecccCcccccccccc---cCCCCCCEEeCCCCcceec----cCCCCCccCCCCEEECcCCcccccCCCCCCC-CC
Q 042359          793 LVRMIDISRNNFSGKIPLEV---TNLKALQSLNFSYNSFTGR----IPESIGVMRSLESIDFSANQLSGEIPESMSS-LT  864 (979)
Q Consensus       793 ~L~~LdLs~N~l~~~ip~~l---~~l~~L~~L~Ls~N~l~~~----ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~-l~  864 (979)
                      .|+.|+|++|.+.+..+..+   ..+++|++|+|+.|.+++.    ++..+..+++|+.|||++|.++...-..+.. + 
T Consensus       253 ~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al-  331 (362)
T 2ra8_A          253 NLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL-  331 (362)
T ss_dssp             TCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC-
T ss_pred             CcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc-
Confidence            34555555555543333222   2356677777777777653    4455556677777777777776543222322 2 


Q ss_pred             CCCEEEccCCc
Q 042359          865 FLNHLNLSNNN  875 (979)
Q Consensus       865 ~L~~L~ls~N~  875 (979)
                       ...+|++.|+
T Consensus       332 -g~~~~~~~~~  341 (362)
T 2ra8_A          332 -PMKIDVSDSQ  341 (362)
T ss_dssp             -CSEEECCSBC
T ss_pred             -CCEEEecCCc
Confidence             3457777765

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.66  E-value=2.4e-08  Score=109.07  Aligned_cols=163  Identities=15%  Similarity=0.180  Sum_probs=75.0

Q ss_pred             CCccccCCCCCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCccccc--ccCccCEEecCCCC-CCccc---
Q 042359          272 IPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALG--NLTSISWLDLSLNM-GIEGR---  345 (979)
Q Consensus       272 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~--~l~~L~~L~L~~n~-~l~~~---  345 (979)
                      +...+..+++|+.|++++|.-. .++. + .+++|++|++..+.+.... ...+.  .+++|++|+|+.+. ...+.   
T Consensus       164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~-l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~  239 (362)
T 2ra8_A          164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSV-VEDILGSDLPNLEKLVLYVGVEDYGFDGDM  239 (362)
T ss_dssp             CHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHH-HHHHHHSBCTTCCEEEEECBCGGGTCCSCG
T ss_pred             HHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHH-HHHHHHccCCCCcEEEEeccccccccchhH
Confidence            3344455666666666665211 1222 2 2566666666666554322 22232  45666666664210 00000   


Q ss_pred             --Ccccc--cCCCCCCeeeccCccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCCCCcEEeccCCcCcc
Q 042359          346 --IPRSM--ASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVG  421 (979)
Q Consensus       346 --~~~~l--~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  421 (979)
                        +...+  ..+++|+.|++.+|.+....+..+.                          ....+++|++|+|+.|.+.+
T Consensus       240 ~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la--------------------------~a~~~~~L~~LdLs~n~L~d  293 (362)
T 2ra8_A          240 NVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFL--------------------------ESDILPQLETMDISAGVLTD  293 (362)
T ss_dssp             GGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHH--------------------------HCSSGGGCSEEECCSSCCBH
T ss_pred             HHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHH--------------------------hCccCCCCCEEECCCCCCCh
Confidence              00111  1345666666655555433222110                          00134566666666666654


Q ss_pred             cC----cccccCCCCCCEEEcCCCcCccccChhhhcC-CCCCcEEEccCCc
Q 042359          422 LI----PESLGQLSTLRVLRINDNKLNGTLSAIHFAN-LTKLSWFRVDGNK  467 (979)
Q Consensus       422 ~~----p~~l~~l~~L~~L~L~~n~l~~~l~~~~~~~-l~~L~~L~L~~n~  467 (979)
                      ..    +..+..+++|+.|++++|.++... ...+.. +  ...++++.++
T Consensus       294 ~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~-~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          294 EGARLLLDHVDKIKHLKFINMKYNYLSDEM-KKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHHHHTTHHHHTTCSEEECCSBBCCHHH-HHHHHHHC--CSEEECCSBC
T ss_pred             HHHHHHHhhcccCCcceEEECCCCcCCHHH-HHHHHHHc--CCEEEecCCc
Confidence            32    222334566777777777665321 112222 2  2446666655

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.56  E-value=4.1e-06  Score=93.10  Aligned_cols=310  Identities=12%  Similarity=0.108  Sum_probs=157.9

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccccCCCC
Q 042359          119 LLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSF  198 (979)
Q Consensus       119 l~~l~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~  198 (979)
                      +..-.+|+.+.+.. .++.+ -..+|.+|.+|+.++|..+ ++.+-...|.++ +|+.+.+..+ +..++...+ .. .+
T Consensus        42 ~~~~~~i~~v~ip~-~vt~I-g~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF-~~-~~  114 (379)
T 4h09_A           42 YKDRDRISEVRVNS-GITSI-GEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVF-QG-TD  114 (379)
T ss_dssp             GGGGGGCSEEEECT-TEEEE-CTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTT-TT-CC
T ss_pred             cccccCCEEEEeCC-CccCh-HHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEecccee-cc-CC
Confidence            44456677777753 34443 2456778888888888654 554445566666 5777666543 444444332 22 25


Q ss_pred             CCEEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCccc---ccCCcc
Q 042359          199 LEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVF---GPIPRG  275 (979)
Q Consensus       199 L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~---~~~p~~  275 (979)
                      |+.+.+..+- .....  ..+... +++.+.+.. .++.+....+..+.+++...+..+............   ......
T Consensus       115 L~~i~lp~~~-~~i~~--~~F~~~-~l~~~~~~~-~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (379)
T 4h09_A          115 LDDFEFPGAT-TEIGN--YIFYNS-SVKRIVIPK-SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILES  189 (379)
T ss_dssp             CSEEECCTTC-CEECT--TTTTTC-CCCEEEECT-TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEE
T ss_pred             cccccCCCcc-ccccc--cccccc-eeeeeeccc-eeeccccchhcccccccccccccccceeecccceecccccceecc
Confidence            6666665431 11111  112222 444444432 244445555666666666666544322100000000   001112


Q ss_pred             ccCCCCCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCcccccCCCC
Q 042359          276 LQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCN  355 (979)
Q Consensus       276 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~~l~~  355 (979)
                      +.....+..+.+.... .......+..+.+|+.+.+..+- . .+...++.++..|+.+.+..+  ++......+.++.+
T Consensus       190 ~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~~-~-~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~  264 (379)
T 4h09_A          190 YPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSGV-T-TLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTA  264 (379)
T ss_dssp             CCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTTC-C-EECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTT
T ss_pred             ccccccccccccccce-eEEeecccccccccceeeeccce-e-EEccccccCCccceEEEcCCC--ccEeCccccceeeh
Confidence            2223333333333221 11222333344445555443331 1 222334444555555554432  22222333444444


Q ss_pred             CCeeeccCccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCCCCcEEeccCCcCcccCcccccCCCCCCE
Q 042359          356 LKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRV  435 (979)
Q Consensus       356 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  435 (979)
                                                   ++.+.+..+ +.......|.++++|+.+.+.++.++.....+|.+|.+|+.
T Consensus       265 -----------------------------l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~  314 (379)
T 4h09_A          265 -----------------------------LKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSS  314 (379)
T ss_dssp             -----------------------------CCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCE
T ss_pred             -----------------------------hcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCE
Confidence                                         444444322 22333446778888888888888777776778888888888


Q ss_pred             EEcCCCcCccccChhhhcCCCCCcEEEccCCcccccccCCCCC
Q 042359          436 LRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIP  478 (979)
Q Consensus       436 L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  478 (979)
                      +.|..+ ++ .+....|.++.+|+.+.+..+ ++.+...+|..
T Consensus       315 i~lp~~-l~-~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~  354 (379)
T 4h09_A          315 VTLPTA-LK-TIQVYAFKNCKALSTISYPKS-ITLIESGAFEG  354 (379)
T ss_dssp             EECCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred             EEcCcc-cc-EEHHHHhhCCCCCCEEEECCc-cCEEchhHhhC
Confidence            888654 43 677778888888888888654 55444555543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.55  E-value=6.7e-06  Score=91.35  Aligned_cols=47  Identities=6%  Similarity=0.124  Sum_probs=32.4

Q ss_pred             cccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccc
Q 042359          143 FFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFW  191 (979)
Q Consensus       143 ~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~  191 (979)
                      ++....+|+.+.+... ++.+-...|.++.+|+.+++..+ +..++..+
T Consensus        41 ~~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~a   87 (379)
T 4h09_A           41 WYKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSIGDGA   87 (379)
T ss_dssp             TGGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEECTTT
T ss_pred             ccccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEechhh
Confidence            4556678888888653 55455667889999999998654 55555443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.46  E-value=1e-08  Score=105.95  Aligned_cols=141  Identities=20%  Similarity=0.106  Sum_probs=79.9

Q ss_pred             CCccccceeccCCCCcEEEEECCCCCCCC-----ch------hhHHHhhccccccccc-ccccCCCCCCE--EeCCCCCC
Q 042359           70 DCCAWAGVFCDNITGHVLHLDLRNPFNYH-----KE------SEYEAIRRTALVGKIN-PSLLDLKHLSY--LDLSFNDF  135 (979)
Q Consensus        70 ~~c~w~gv~c~~~~~~v~~L~L~~~~~~~-----~~------~~~~~~~~~~l~~~~~-~~l~~l~~L~~--L~Ls~n~i  135 (979)
                      .-|.|.|+.|+....+|..+...+.....     ..      ..+...|.+...+.++ +.+...+.|+.  ++++.|..
T Consensus        76 ~l~~~~g~i~~~~~~ki~~~v~~~~~~~~~~~~l~~~~~~~Lk~~l~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N~~  155 (267)
T 3rw6_A           76 ALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRR  155 (267)
T ss_dssp             HHHHTTSSCBCTTSCBCCCEEEECCCCHHHHTSCCHHHHHHHHHHHHHTEETTTTEEECTTGGGCHHHHHTTCCCCTTSH
T ss_pred             HHHhcCcEEECCCCCEEEEEEecCCCcccccccCCHHHHHHHHHHHHhccchhccccCHHHcCCCcchhhcCccccCCHH
Confidence            35889999997544455444443311000     00      1222334444445444 23555555655  66666643


Q ss_pred             CCCC--ccccccCCCCCCEEEcCCCCCCC--CCccccCCCCCCceEecCCCccccCCccccccCCCCCCEEEccCccCCC
Q 042359          136 QGIQ--IPRFFGSMGNLRYLNLSRTRIGG--MIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSK  211 (979)
Q Consensus       136 ~~~~--lp~~~~~l~~L~~L~Ls~n~i~~--~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~l~~n~~~~  211 (979)
                      ....  ++....++++|++|+|++|+|++  .+|..+..+++|++|+|++|.+..++....+..+ +|++|++++|.+.+
T Consensus       156 ~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          156 SCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCD  234 (267)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGG
T ss_pred             HHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCcc
Confidence            3210  11122467888899999988887  3456667888888888888887766543333333 56666666655543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.41  E-value=2.9e-08  Score=102.53  Aligned_cols=63  Identities=19%  Similarity=0.276  Sum_probs=28.4

Q ss_pred             ceeEEecccCcccc--cccccccCCCCCCEEeCCCCcceeccCCCCCccC--CCCEEECcCCcccccCC
Q 042359          793 LVRMIDISRNNFSG--KIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMR--SLESIDFSANQLSGEIP  857 (979)
Q Consensus       793 ~L~~LdLs~N~l~~--~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~--~L~~LdLs~N~l~~~ip  857 (979)
                      .|+.|+||+|+|++  .+|..+..+++|+.|+|++|+|++.  ..+..+.  +|++|+|++|.+++.+|
T Consensus       171 ~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            34455555555544  3334444455555555555555432  1223332  44444444444444433

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.28  E-value=1.2e-07  Score=93.18  Aligned_cols=113  Identities=19%  Similarity=0.180  Sum_probs=55.3

Q ss_pred             CCCcEEEcccc-cccccCChhhhhcccCCCcccEEeccCcccccc----CCccccCCCCCCEEEccCCccccc----CCc
Q 042359          573 SNLVFLDLSNN-LFSGSISPFLCYRINETKSLNALQLNDNYLNGE----LPDCWMSYQNLKTLKLSNNKFTGN----LPY  643 (979)
Q Consensus       573 ~~L~~L~Ls~n-~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~  643 (979)
                      ++|++|++++| .+.......++..+...++|++|+|++|.+...    +...+...++|++|+|++|.|...    +..
T Consensus        36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~  115 (185)
T 1io0_A           36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE  115 (185)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence            45566666666 555444444444445555666666666655432    122233344555555555555432    233


Q ss_pred             ccCCCCCccEEEc--CCcccccc----ccccccCCCCCCEEeccCCcc
Q 042359          644 SMGSLTSLVWLHL--GENRLSGN----ILVSLKNCTALESLDVGENEF  685 (979)
Q Consensus       644 ~l~~l~~L~~L~L--~~n~l~~~----~p~~l~~l~~L~~L~L~~N~l  685 (979)
                      .+...++|++|+|  ++|.+...    +...+...++|++|++++|.+
T Consensus       116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            3444455555555  44555432    122333445555555555554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.18  E-value=4.1e-07  Score=89.41  Aligned_cols=42  Identities=7%  Similarity=0.019  Sum_probs=18.1

Q ss_pred             cCCCCCccEEEccCCCCCCCCh----hhhcCCCCCCEEECCCCCCC
Q 042359          219 TNKLPSLVELRLANCQLHHFSL----LATANFSSLTVLDLSDNQFD  260 (979)
Q Consensus       219 ~~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~Ls~n~l~  260 (979)
                      +...++|++|+|++|.+.....    ..+...++|++|+|++|.++
T Consensus        61 L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~  106 (185)
T 1io0_A           61 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS  106 (185)
T ss_dssp             HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence            3344444444444444443221    22233344555555555444

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.76  E-value=1.3e-05  Score=76.38  Aligned_cols=85  Identities=14%  Similarity=0.102  Sum_probs=60.3

Q ss_pred             CCCCEEeccCCcCcccCchhhccCCCCCEEeccCCc-CccccCccccccc----CccCEEecCCCCCCcccCcccccCCC
Q 042359          280 TSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNS-LQGTIDSEALGNL----TSISWLDLSLNMGIEGRIPRSMASLC  354 (979)
Q Consensus       280 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~i~~~~l~~l----~~L~~L~L~~n~~l~~~~~~~l~~l~  354 (979)
                      -+|++||+++|.++..--..+.++++|++|+|++|. +++.- ...++.+    ++|++|++++|..+++..-..+..++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~g-L~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGC-LERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHH-HHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHH-HHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            467888888887766555556778888888888875 54322 4445543    46888888888667776666677788


Q ss_pred             CCCeeeccCcc
Q 042359          355 NLKSLNLRGVH  365 (979)
Q Consensus       355 ~L~~L~L~~n~  365 (979)
                      +|++|++++|.
T Consensus       140 ~L~~L~L~~c~  150 (176)
T 3e4g_A          140 NLKYLFLSDLP  150 (176)
T ss_dssp             TCCEEEEESCT
T ss_pred             CCCEEECCCCC
Confidence            88888888875

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.66  E-value=1.8e-05  Score=75.44  Aligned_cols=34  Identities=9%  Similarity=0.092  Sum_probs=15.6

Q ss_pred             CCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCC
Q 042359          124 HLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRT  158 (979)
Q Consensus       124 ~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n  158 (979)
                      .|+.||++++.|+.. --..+..+++|++|+|++|
T Consensus        62 ~L~~LDLs~~~Itd~-GL~~L~~~~~L~~L~L~~C   95 (176)
T 3e4g_A           62 KIQAIDATDSCIMSI-GFDHMEGLQYVEKIRLCKC   95 (176)
T ss_dssp             CEEEEEEESCCCCGG-GGGGGTTCSCCCEEEEESC
T ss_pred             eEeEEeCcCCCccHH-HHHHhcCCCCCCEEEeCCC
Confidence            455555555554432 1223344455555555544

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.05  E-value=0.00076  Score=61.25  Aligned_cols=57  Identities=16%  Similarity=0.243  Sum_probs=33.0

Q ss_pred             EEeCCCCcce-eccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCcccc
Q 042359          820 SLNFSYNSFT-GRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTG  878 (979)
Q Consensus       820 ~L~Ls~N~l~-~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  878 (979)
                      .++.+++.++ ..+|..+.  .+|+.|||++|+|+..-+..|..+++|++|+|++|++..
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            4555555554 24444333  356666666666665545556666666677777776653

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.03  E-value=0.00014  Score=70.62  Aligned_cols=113  Identities=14%  Similarity=0.158  Sum_probs=64.5

Q ss_pred             CCCcEEEcccc-cccccCChhhhhcccCCCcccEEeccCccccccC----CccccCCCCCCEEEccCCccccc----CCc
Q 042359          573 SNLVFLDLSNN-LFSGSISPFLCYRINETKSLNALQLNDNYLNGEL----PDCWMSYQNLKTLKLSNNKFTGN----LPY  643 (979)
Q Consensus       573 ~~L~~L~Ls~n-~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~----p~~~~~l~~L~~L~Ls~N~l~~~----~p~  643 (979)
                      +.|++|+|++| .+.......++..+...+.|+.|+|++|.+...-    .+.+..-+.|++|+|++|.|...    +-.
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~  120 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR  120 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence            46777777764 6655544556666666677777777777776432    22333446677777777777532    222


Q ss_pred             ccCCCCCccEEEcCCc---cccc----cccccccCCCCCCEEeccCCcc
Q 042359          644 SMGSLTSLVWLHLGEN---RLSG----NILVSLKNCTALESLDVGENEF  685 (979)
Q Consensus       644 ~l~~l~~L~~L~L~~n---~l~~----~~p~~l~~l~~L~~L~L~~N~l  685 (979)
                      .+..-+.|++|+|++|   .+..    .+...+..-+.|+.|+++.|.+
T Consensus       121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            3444456677776654   2221    1233444555666666665543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.70  E-value=0.00061  Score=66.17  Aligned_cols=44  Identities=18%  Similarity=0.170  Sum_probs=19.9

Q ss_pred             hhcCCCCCccEEEccCCCCCCCCh----hhhcCCCCCCEEECCCCCCC
Q 042359          217 MVTNKLPSLVELRLANCQLHHFSL----LATANFSSLTVLDLSDNQFD  260 (979)
Q Consensus       217 ~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~Ls~n~l~  260 (979)
                      ..+..-+.|++|+|++|++.....    ..+..-+.|++|+|++|.+.
T Consensus        64 ~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           64 EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             HHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            334444455555555555443322    22233344555555555544

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.42  E-value=0.0038  Score=56.60  Aligned_cols=58  Identities=17%  Similarity=0.308  Sum_probs=48.8

Q ss_pred             eEEecccCccc-ccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccc
Q 042359          795 RMIDISRNNFS-GKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSG  854 (979)
Q Consensus       795 ~~LdLs~N~l~-~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~  854 (979)
                      ..+|.+++.++ ..+|..+.  .+|+.|+|++|+|+..-+..|..+++|+.|+|++|.+..
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            57899999997 56776553  469999999999996666778999999999999998864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	979
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-22
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-18
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-16
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	8e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	8e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.001
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.003
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	9e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	9e-08
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	7e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	2e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	6e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	5e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	8e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	6e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	5e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.002
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	5e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	6e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.001
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.002

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 97.9 bits (242), Expect = 1e-22
 Identities = 78/320 (24%), Positives = 113/320 (35%), Gaps = 31/320 (9%)

Query: 40  CLGSEKEALLSFKRDLKDPSNRLASWSGNGDCC--AWAGVFCDNITG--HVLHLDLRNPF 95
           C   +K+ALL  K+DL +P+  L+SW    DCC   W GV CD  T    V +LDL    
Sbjct: 3   CNPQDKQALLQIKKDLGNPTT-LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG-- 59

Query: 96  NYHKESEYEAIRRTALVGKINPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNL 155
                              I  SL +L +L++L +   +     IP     +  L YL +
Sbjct: 60  -----------LNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI 108

Query: 156 SRTRIGGMIPHHLGNLSNLQFLDLSSNYLLY----------VDNFWWLSGLSFLEHL-DL 204
           + T + G IP  L  +  L  LD S N L                    G      + D 
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168

Query: 205 RSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFI 264
                       +  N+L   +    AN  L    L         +VL  SD    K  +
Sbjct: 169 YGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228

Query: 265 PSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEA 324
                      +    +L  L L +N    ++P  L +   L  L++S N+L G I    
Sbjct: 229 AKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-- 286

Query: 325 LGNLTSISWLDLSLNMGIEG 344
            GNL        + N  + G
Sbjct: 287 GGNLQRFDVSAYANNKCLCG 306

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 85.6 bits (210), Expect = 1e-18
 Identities = 69/288 (23%), Positives = 116/288 (40%), Gaps = 29/288 (10%)

Query: 626 NLKTLKLSNNKFTGN--LPYSMGSLTSLVWLHLGEN-RLSGNILVSLKNCTALESLDVGE 682
            +  L LS         +P S+ +L  L +L++G    L G I  ++   T L  L +  
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110

Query: 683 NEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCI 742
               G IP ++ +  + + +     N   G LP  +  L  L  +    N +SGAIP+  
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSY-NALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169

Query: 743 NNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRN 802
            + + + T+ + +R+                       +          NL         
Sbjct: 170 GSFSKLFTSMTISRN-----------------------RLTGKIPPTFANLNLAFVDLSR 206

Query: 803 NFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSS 862
           N        +              +        +G+ ++L  +D   N++ G +P+ ++ 
Sbjct: 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQ 266

Query: 863 LTFLNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGND-LCGAPLPKNCT 909
           L FL+ LN+S NNL G+IP    LQ FDVS++A N  LCG+PLP  CT
Sbjct: 267 LKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPA-CT 313

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 78.6 bits (192), Expect = 3e-16
 Identities = 61/268 (22%), Positives = 101/268 (37%), Gaps = 6/268 (2%)

Query: 594 CYRINETKSLNALQLNDNYLNG--ELPDCWMSYQNLKTLKLSNN-KFTGNLPYSMGSLTS 650
           C    +T  +N L L+   L     +P    +   L  L +       G +P ++  LT 
Sbjct: 43  CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ 102

Query: 651 LVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKF 710
           L +L++    +SG I   L     L +LD   N   G +P  I      +V +    N+ 
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRI 161

Query: 711 HGPLPTGLCDLAFLQI-LDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVG 769
            G +P      + L   + I+ N L+G IP    NL       S          L     
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDK 221

Query: 770 VILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFT 829
                  +  S    +    +   +  +D+  N   G +P  +T LK L SLN S+N+  
Sbjct: 222 NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

Query: 830 GRIPESIGVMRSLESIDFSANQLSGEIP 857
           G IP+  G ++  +   ++ N+     P
Sbjct: 282 GEIPQ-GGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 61.7 bits (148), Expect = 1e-10
 Identities = 53/271 (19%), Positives = 89/271 (32%), Gaps = 11/271 (4%)

Query: 302 RFIHLEYLSLSNNSLQGTID-SEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLN 360
           +   +  L LS  +L        +L NL  +++L +     + G IP ++A L  L    
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL---- 103

Query: 361 LRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIV 420
              ++++                 L +LD   +++ G L   +    N+V + F  N I 
Sbjct: 104 -HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162

Query: 421 GLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPF 480
           G IP+S G  S L          N     I          F      +  G         
Sbjct: 163 GAIPDSYGSFSKLFTSMTISR--NRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSD 220

Query: 481 QLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQ 540
           +            +     +   K+L  L L N+ I    P + L     L  L++  N 
Sbjct: 221 KNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLP-QGLTQLKFLHSLNVSFNN 279

Query: 541 IHGPIPNLTEFTGLLILSVYSNNM--SGPLP 569
           + G IP         + +  +N      PLP
Sbjct: 280 LCGEIPQGGNLQRFDVSAYANNKCLCGSPLP 310

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 59.4 bits (142), Expect = 6e-10
 Identities = 50/279 (17%), Positives = 82/279 (29%), Gaps = 20/279 (7%)

Query: 194 SGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANC-QLHHFSLLATANFSSLTVL 252
           +    + +LDL  +NL K +        LP L  L +     L      A A  + L  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 253 DLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLS 312
            ++                          L  L    N  + ++P  +    +L  ++  
Sbjct: 107 YITHTNVSGAIPDFLSQIKT---------LVTLDFSYNALSGTLPPSISSLPNLVGITFD 157

Query: 313 NNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISE 372
            N + G I                 L   +     R    +    +              
Sbjct: 158 GNRISGAIPDS--------YGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNML 209

Query: 373 ILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLST 432
             D      S+        + +       ++G  KN+  LD  NN I G +P+ L QL  
Sbjct: 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269

Query: 433 LRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLG 471
           L  L ++ N L G +      NL +        NK   G
Sbjct: 270 LHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNKCLCG 306

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 52.1 bits (123), Expect = 2e-07
 Identities = 54/272 (19%), Positives = 89/272 (32%), Gaps = 33/272 (12%)

Query: 401 DQLGQFKNIVTLDFANNSIVGL--IPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKL 458
           D   Q   +  LD +  ++     IP SL  L  L  L I              A LT+L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 459 SWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISD 518
            +  +    ++  +         LV L      +    P  + S  +L  +    + IS 
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 519 IFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTG------------------------- 553
             P  +   +     + + +N++ G IP                                
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223

Query: 554 -LLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNY 612
             + L+  S         +S NL  LDL NN   G++   L     + K L++L ++ N 
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT----QLKFLHSLNVSFNN 279

Query: 613 LNGELPDCWMSYQNLKTLKLSNNKFTGNLPYS 644
           L GE+P    + Q       +NNK     P  
Sbjct: 280 LCGEIPQGG-NLQRFDVSAYANNKCLCGSPLP 310

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 46.3 bits (108), Expect = 1e-05
 Identities = 61/297 (20%), Positives = 109/297 (36%), Gaps = 33/297 (11%)

Query: 326 GNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGL 385
                ++ LDLS  + +    P   +SL NL  LN   +     +   +      ++  L
Sbjct: 47  TQTYRVNNLDLS-GLNLPKPYPIP-SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ-L 103

Query: 386 ESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNG 445
             L +   ++ G + D L Q K +VTLDF+ N++ G +P S+  L  L  +  + N+++G
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 446 TLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKH 505
            +   + +     +   +  N+LT  +   +           RN   G    L+   +  
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223

Query: 506 LQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMS 565
            +     NS   D+  +   K+ +    LDL  N+I+G +P     T L           
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLN---GLDLRNNRIYGTLPQ--GLTQL----------- 267

Query: 566 GPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYL--NGELPDC 620
                    L  L++S N   G I           +  +     +N       LP C
Sbjct: 268 -------KFLHSLNVSFNNLCGEIPQG-----GNLQRFDVSAYANNKCLCGSPLPAC 312

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 85.1 bits (209), Expect = 5e-18
 Identities = 67/374 (17%), Positives = 127/374 (33%), Gaps = 37/374 (9%)

Query: 504 KHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHG--PIPNLTEFTGLLILSVYS 561
             +  L      I  I  + +L +   L  ++   NQ+    P+ NLT+   +L+ +   
Sbjct: 44  DQVTTLQADRLGIKSIDGVEYLNN---LTQINFSNNQLTDITPLKNLTKLVDILMNNNQI 100

Query: 562 NNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCW 621
            +++    L +   + L  +       +         E  S     ++       L    
Sbjct: 101 ADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLS 160

Query: 622 MSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVG 681
              Q      L+N      L  S   ++ +  L                  T LESL   
Sbjct: 161 FGNQVTDLKPLANLTTLERLDISSNKVSDISVLA---------------KLTNLESLIAT 205

Query: 682 ENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIP-N 740
            N+     P  I    + +  L L  N+        L  L  L  LD+A+N +S   P +
Sbjct: 206 NNQISDITPLGI---LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLS 260

Query: 741 CINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDIS 800
            +  LT +    +   ++     L               ++ E +     L  +  + + 
Sbjct: 261 GLTKLTELKLGANQISNISPLAGLTAL-----TNLELNENQLEDISPISNLKNLTYLTLY 315

Query: 801 RNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESM 860
            NN S   P+   +L  LQ L F+ N  +     S+  + ++  +    NQ+S   P  +
Sbjct: 316 FNNISDISPVS--SLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--L 369

Query: 861 SSLTFLNHLNLSNN 874
           ++LT +  L L++ 
Sbjct: 370 ANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 83.9 bits (206), Expect = 1e-17
 Identities = 68/366 (18%), Positives = 131/366 (35%), Gaps = 36/366 (9%)

Query: 117 PSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQF 176
            S  DL  ++ L       + I        + NL  +N S  ++  + P  L NL+ L  
Sbjct: 38  VSQTDLDQVTTLQADRLGIKSID---GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVD 92

Query: 177 LDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVEL-RLANCQL 235
           + +++N +  +     L+ L+ L   + +  ++    +   +     S   +  ++    
Sbjct: 93  ILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSG 152

Query: 236 HHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSS 295
                  +       +  L++    +    S         L  LT+L  L   +N  +  
Sbjct: 153 LTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDI 212

Query: 296 IPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCN 355
            P  +    +L+ LSL+ N L+       L +LT+++ LDL+ N  I    P S   L  
Sbjct: 213 TPLGILT--NLDELSLNGNQLKDI---GTLASLTNLTDLDLANNQ-ISNLAPLS--GLTK 264

Query: 356 LKSLNLRGVHL---------------SQEISEILDIFSGCVSNGLESLDLRSDSIYGHLT 400
           L  L L    +                   +++ DI        L  L L  ++I     
Sbjct: 265 LTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD--I 322

Query: 401 DQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSW 460
             +     +  L FANN +      SL  L+ +  L    N+++        ANLT+++ 
Sbjct: 323 SPVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDL---TPLANLTRITQ 377

Query: 461 FRVDGN 466
             ++  
Sbjct: 378 LGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 74.7 bits (182), Expect = 1e-14
 Identities = 63/367 (17%), Positives = 126/367 (34%), Gaps = 31/367 (8%)

Query: 222 LPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTS 281
           L  +  L+     +     +     ++LT ++ S+NQ              P  L+NLT 
Sbjct: 43  LDQVTTLQADRLGIKSIDGVE--YLNNLTQINFSNNQLT---------DITP--LKNLTK 89

Query: 282 LRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMG 341
           L  + +++N      P      +    L  +  +    + +    N   +S   +S    
Sbjct: 90  LVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISA 149

Query: 342 IEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRS--DSIYGHL 399
           + G       S  N  +      +L+      +        + L  L       +    +
Sbjct: 150 LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQI 209

Query: 400 TDQLGQ--FKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTK 457
           +D        N+  L    N +      +L  L+ L  L + +N+++        + LTK
Sbjct: 210 SDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNL---APLSGLTK 264

Query: 458 LSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSIS 517
           L+  ++  N+++  +                N          L    +L +L L  ++IS
Sbjct: 265 LTELKLGANQIS-NISPLAGLTALTNLELNENQLEDISPISNLK---NLTYLTLYFNNIS 320

Query: 518 DIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLIS-SNLV 576
           DI P+  L     L+ L    N++     +L   T +  LS   N +S   PL + + + 
Sbjct: 321 DISPVSSLTK---LQRLFFANNKVSDV-SSLANLTNINWLSAGHNQISDLTPLANLTRIT 376

Query: 577 FLDLSNN 583
            L L++ 
Sbjct: 377 QLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 71.2 bits (173), Expect = 1e-13
 Identities = 60/392 (15%), Positives = 138/392 (35%), Gaps = 25/392 (6%)

Query: 513 NSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLIS 572
           ++ I+ IF    L   ++     LG+  +   +   T+   +  L      +     +  
Sbjct: 9   DTPINQIFTDTAL---AEKMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSIDGVEY 64

Query: 573 -SNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLK 631
            +NL  ++ SNN  +         ++ +    N    +   L        ++  N +   
Sbjct: 65  LNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD 124

Query: 632 LSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLD------VGENEF 685
           +   K   NL     S  ++  +       S   L      T L+ L         +   
Sbjct: 125 IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISS 184

Query: 686 VGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNL 745
                  +  + + +  LI  +N+     P G+     L  L +  N L       + +L
Sbjct: 185 NKVSDISVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD--IGTLASL 240

Query: 746 TGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFS 805
           T +         +    PL     +  ++    +   ++ +   +  L  + ++  N   
Sbjct: 241 TNLTDLDLANNQISNLAPLSGLTKLTELK----LGANQISNISPLAGLTALTNLELNENQ 296

Query: 806 GKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTF 865
            +    ++NLK L  L   +N+ +   P  +  +  L+ + F+ N++S     S+++LT 
Sbjct: 297 LEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTN 352

Query: 866 LNHLNLSNNNLTGKIPSS--TQLQSFDVSSFA 895
           +N L+  +N ++   P +  T++    ++  A
Sbjct: 353 INWLSAGHNQISDLTPLANLTRITQLGLNDQA 384

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 78.5 bits (192), Expect = 2e-16
 Identities = 51/274 (18%), Positives = 88/274 (32%), Gaps = 21/274 (7%)

Query: 123 KHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSN 182
              + LDL  N    I     F ++ NL  L L   +I  + P     L  L+ L LS N
Sbjct: 31  PDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89

Query: 183 YLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLA 242
            L  +           L+ L +    ++K    +        +VEL     +       A
Sbjct: 90  QLKELPEKMP----KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 145

Query: 243 TANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYR 302
                 L+ + ++D               IP+GL    SL  L LD N         L  
Sbjct: 146 FQGMKKLSYIRIADTNITT----------IPQGL--PPSLTELHLDGNKITKVDAASLKG 193

Query: 303 FIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLR 362
             +L  L LS NS+    +               +  +    ++P  +A    ++ + L 
Sbjct: 194 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL---VKVPGGLADHKYIQVVYLH 250

Query: 363 GVHLSQ-EISEILDIFSGCVSNGLESLDLRSDSI 395
             ++S    ++               + L S+ +
Sbjct: 251 NNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.2 bits (160), Expect = 4e-12
 Identities = 42/282 (14%), Positives = 92/282 (32%), Gaps = 30/282 (10%)

Query: 625 QNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENE 684
            +   L L NNK T        +L +L  L L  N++S     +      LE L + +N+
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 685 FVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINN 744
                   + E+  + +  +         +   + +     I+     N   +       
Sbjct: 91  L-----KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 145

Query: 745 LTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNF 804
             GM        +      +P                      + +   +  + +  N  
Sbjct: 146 FQGMKKLSYIRIADTNITTIP----------------------QGLPPSLTELHLDGNKI 183

Query: 805 SGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLT 864
           +      +  L  L  L  S+NS +     S+     L  +  + N+L  ++P  ++   
Sbjct: 184 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHK 242

Query: 865 FLNHLNLSNNNLTGKIPSSTQLQSFDV--SSFAGNDLCGAPL 904
           ++  + L NNN++    +      ++   +S++G  L   P+
Sbjct: 243 YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.3 bits (155), Expect = 1e-11
 Identities = 46/238 (19%), Positives = 81/238 (34%), Gaps = 9/238 (3%)

Query: 504 KHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPN-LTEFTGLLILSVYSN 562
                L L N+ I++I      K+   L  L L  N+I    P        L  L +  N
Sbjct: 31  PDTALLDLQNNKITEIKD-GDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89

Query: 563 NMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWM 622
            +      +   L  L +  N  +                +  L  N    +G     + 
Sbjct: 90  QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI--VVELGTNPLKSSGIENGAFQ 147

Query: 623 SYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGE 682
             + L  +++++   T       G   SL  LHL  N+++     SLK    L  L +  
Sbjct: 148 GMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 204

Query: 683 NEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPN 740
           N         +        + +  +N     +P GL D  ++Q++ + +NN+S    N
Sbjct: 205 NSISAVDNGSLANTPHLRELHL--NNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSN 260

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.5 bits (153), Expect = 3e-11
 Identities = 52/312 (16%), Positives = 104/312 (33%), Gaps = 25/312 (8%)

Query: 354 CNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLD 413
           C+L+ +    + L +   ++              LDL+++ I           KN+ TL 
Sbjct: 10  CHLRVVQCSDLGLEKVPKDL--------PPDTALLDLQNNKITEIKDGDFKNLKNLHTLI 61

Query: 414 FANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVK 473
             NN I  + P +   L  L  L ++ N+L   L       L +L     +  K+   V 
Sbjct: 62  LINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSV- 119

Query: 474 HDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKF 533
            + +    +V LG                 K L ++ + +++I+ I           L  
Sbjct: 120 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP----PSLTE 175

Query: 534 LDLGQNQIHGPIPN-LTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPF 592
           L L  N+I       L     L  L +  N++S       +N   L   +   + +    
Sbjct: 176 LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH--LNNNKLVK 233

Query: 593 LCYRINETKSLNALQLNDNYLNG------ELPDCWMSYQNLKTLKLSNNKFTGN--LPYS 644
           +   + + K +  + L++N ++         P       +   + L +N        P +
Sbjct: 234 VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPST 293

Query: 645 MGSLTSLVWLHL 656
              +     + L
Sbjct: 294 FRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.0 bits (136), Expect = 3e-09
 Identities = 62/339 (18%), Positives = 113/339 (33%), Gaps = 53/339 (15%)

Query: 227 ELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLG 286
            LR+  C       +         +LDL +N+  +  I    F        NL +L  L 
Sbjct: 11  HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITE--IKDGDFK-------NLKNLHTLI 61

Query: 287 LDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRI 346
           L +N  +   P      + LE L LS N L+       L      +  +L ++     ++
Sbjct: 62  LINNKISKISPGAFAPLVKLERLYLSKNQLKE------LPEKMPKTLQELRVHENEITKV 115

Query: 347 PRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQF 406
            +S+ +  N   +   G +  +        F      G++ L     +     T   G  
Sbjct: 116 RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ-----GMKKLSYIRIADTNITTIPQGLP 170

Query: 407 KNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGN 466
            ++  L    N I  +   SL  L+ L  L ++ N ++   +         L    ++ N
Sbjct: 171 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT-PHLRELHLNNN 229

Query: 467 KLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDI-----FP 521
           KL                          + P  L   K++Q +YL N++IS I      P
Sbjct: 230 KLV-------------------------KVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 264

Query: 522 IRFLKSASQLKFLDLGQNQI-HGPIPNLTEFTGLLILSV 559
             +    +    + L  N + +  I   T F  + + + 
Sbjct: 265 PGYNTKKASYSGVSLFSNPVQYWEIQPST-FRCVYVRAA 302

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.6 bits (104), Expect = 3e-05
 Identities = 18/93 (19%), Positives = 34/93 (36%)

Query: 788 EDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDF 847
           +D+     ++D+  N  +     +  NLK L +L    N  +   P +   +  LE +  
Sbjct: 27  KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 86

Query: 848 SANQLSGEIPESMSSLTFLNHLNLSNNNLTGKI 880
           S NQL     +   +L  L         +   +
Sbjct: 87  SKNQLKELPEKMPKTLQELRVHENEITKVRKSV 119

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.4 bits (160), Expect = 3e-12
 Identities = 45/258 (17%), Positives = 85/258 (32%), Gaps = 5/258 (1%)

Query: 406 FKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDG 465
                 +    N I  +   S      L +L ++ N L    +A              D 
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 466 NKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFL 525
            +L       +    +L  L L  C +    P        LQ+LYL ++++  +      
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD-DTF 149

Query: 526 KSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLF 585
           +    L  L L  N+I             L   +   N    +   +   +   ++  LF
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209

Query: 586 SGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSM 645
           + ++S      +   ++L  L+LNDN    +     + +  L+  + S+++   +LP   
Sbjct: 210 ANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL-WAWLQKFRGSSSEVPCSLP--- 265

Query: 646 GSLTSLVWLHLGENRLSG 663
             L       L  N L G
Sbjct: 266 QRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (139), Expect = 1e-09
 Identities = 52/258 (20%), Positives = 85/258 (32%), Gaps = 23/258 (8%)

Query: 123 KHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSN 182
                + L  N    +     F +  NL  L L    +  +       L+ L+ LDLS N
Sbjct: 32  AASQRIFLHGNRISHV-PAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 183 YLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLA 242
             L   +     GL  L  L L             +   L +L  L L +  L       
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLD--RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148

Query: 243 TANFSSLTVLDLSDNQFD---------------KWFIPSWVFGPIPRGLQNLTSLRHLGL 287
             +  +LT L L  N+                      + V    P   ++L  L  L L
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 288 DSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIP 347
            +N+ ++     L     L+YL L++N      D  A      +     S +  +   +P
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDNPWVC--DCRARPLWAWLQKFRGSSS-EVPCSLP 265

Query: 348 RSMA--SLCNLKSLNLRG 363
           + +A   L  L + +L+G
Sbjct: 266 QRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (139), Expect = 1e-09
 Identities = 38/273 (13%), Positives = 93/273 (34%), Gaps = 13/273 (4%)

Query: 294 SSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASL 353
            ++P  +      + + L  N +   + + +     +     L++       + R  A+ 
Sbjct: 24  QAVPVGIPA--ASQRIFLHGNRISH-VPAASFRACRN-----LTILWLHSNVLARIDAAA 75

Query: 354 CNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLD 413
               +L  +           +D  +      L +L L    +             +  L 
Sbjct: 76  FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 135

Query: 414 FANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVK 473
             +N++  L  ++   L  L  L ++ N+++  +    F  L  L    +  N++     
Sbjct: 136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHP 194

Query: 474 HDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKF 533
           H +    +L+ L L    + +     L   + LQ+L L ++        R L   + L+ 
Sbjct: 195 HAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLW--AWLQK 252

Query: 534 LDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSG 566
                +++   +P      G  +  + +N++ G
Sbjct: 253 FRGSSSEVPCSLPQ--RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (137), Expect = 2e-09
 Identities = 40/255 (15%), Positives = 79/255 (30%), Gaps = 5/255 (1%)

Query: 649 TSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSN 708
            +   + L  NR+S     S + C  L  L +  N                  + +  + 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 709 KFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDV 768
           +     P     L  L  L +    L    P     L  +        ++Q         
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 769 GVILVEKASVVSKGEMVDYEDILNL--VRMIDISRNNFSGKIPLEVTNLKALQSLNFSYN 826
              L       ++   V       L  +  + + +N  +   P    +L  L +L    N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 827 SFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSSTQL 886
           + +    E++  +R+L+ +  + N    +   +     +L     S++ +   +P    L
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSLPQR--L 268

Query: 887 QSFDVSSFAGNDLCG 901
              D+   A NDL G
Sbjct: 269 AGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (137), Expect = 2e-09
 Identities = 44/255 (17%), Positives = 83/255 (32%), Gaps = 6/255 (2%)

Query: 626 NLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEF 685
             + + L  N+ +     S  +  +L  L L  N L+     +      LE LD+ +N  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 686 VGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNL 745
           + ++         R+  L L         P     LA LQ L + DN L     +   +L
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152

Query: 746 TGMVTACSFTRSVQQYLPLPIDVGVILVEKASV--VSKGEMVDYEDILNLVRMIDISRNN 803
             +         +             L                    L  +  + +  NN
Sbjct: 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212

Query: 804 FSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSL 863
            S      +  L+ALQ L  + N +      +  +   L+    S++++   +P+ ++  
Sbjct: 213 LSALPTEALAPLRALQYLRLNDNPWVC-DCRARPLWAWLQKFRGSSSEVPCSLPQRLAGR 271

Query: 864 TFLNHLNLSNNNLTG 878
                  L+ N+L G
Sbjct: 272 DL---KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (124), Expect = 8e-08
 Identities = 50/268 (18%), Positives = 79/268 (29%), Gaps = 21/268 (7%)

Query: 149 NLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVN 208
             + + L   RI  +         NL  L L SN L  +D   +       +     +  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 209 LSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWV 268
           L          + L  L  L L  C L           ++L  L L DN           
Sbjct: 93  LRSVDPATF--HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL--------- 141

Query: 269 FGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNL 328
                   ++L +L HL L  N  +S           L+ L L  N +   +   A  +L
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH-VHPHAFRDL 200

Query: 329 TSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESL 388
             +  L L  N  +      ++A L  L+ L L       +           +   L+  
Sbjct: 201 GRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDNPWVCDCRARP------LWAWLQKF 253

Query: 389 DLRSDSIYGHLTDQLG--QFKNIVTLDF 414
              S  +   L  +L     K +   D 
Sbjct: 254 RGSSSEVPCSLPQRLAGRDLKRLAANDL 281

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (124), Expect = 8e-08
 Identities = 39/207 (18%), Positives = 70/207 (33%), Gaps = 2/207 (0%)

Query: 531 LKFLDLGQNQIHGPIPN-LTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSI 589
            + + L  N+I             L IL ++SN ++       + L  L+  +   +  +
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 590 SPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLT 649
                   +    L+ L L+   L    P  +     L+ L L +N        +   L 
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153

Query: 650 SLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNK 709
           +L  L L  NR+S     + +   +L+ L + +N      P    +    M + +   N 
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA-NN 212

Query: 710 FHGPLPTGLCDLAFLQILDIADNNLSG 736
                   L  L  LQ L + DN    
Sbjct: 213 LSALPTEALAPLRALQYLRLNDNPWVC 239

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 6e-07
 Identities = 47/291 (16%), Positives = 92/291 (31%), Gaps = 34/291 (11%)

Query: 423 IPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLS-WFRVDGNKLTLGVKHDWIPPFQ 481
           +P  +   +  + + ++ N+++  + A  F     L+  +        +           
Sbjct: 26  VPVGIP--AASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 482 LVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQI 541
                  N  + S  P   +    L  L+L    + ++ P  F   A+ L++L L  N +
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA-LQYLYLQDNAL 141

Query: 542 HGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETK 601
                +                          NL  L L  N  S               
Sbjct: 142 QALPDDTFRDL--------------------GNLTHLFLHGNRISSVPERAFR----GLH 177

Query: 602 SLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRL 661
           SL+ L L+ N +    P  +     L TL L  N  +     ++  L +L +L L +N  
Sbjct: 178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

Query: 662 SGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHG 712
             +   +      L+      +E   ++P    +R +   +  L +N   G
Sbjct: 238 VCDC-RARPLWAWLQKFRGSSSEVPCSLP----QRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 1e-04
 Identities = 51/313 (16%), Positives = 89/313 (28%), Gaps = 47/313 (15%)

Query: 232 NCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNH 291
           +C       +     ++   + L  N+                  +   +L  L L SN 
Sbjct: 17  SCPQQGLQAVPVGIPAASQRIFLHGNRIS---------HVPAASFRACRNLTILWLHSNV 67

Query: 292 FNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMA 351
                         LE L LS+N+   ++D      L  +  L L               
Sbjct: 68  LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ--------- 118

Query: 352 SLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVT 411
                                 L          L+ L L+ +++     D      N+  
Sbjct: 119 ---------------------ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 157

Query: 412 LDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLG 471
           L    N I  +   +   L +L  L ++ N++   +    F +L +L    +  N L+  
Sbjct: 158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH-VHPHAFRDLGRLMTLYLFANNLSAL 216

Query: 472 VKHDWIPPFQLVALGLR-NCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQ 530
                 P   L  L L  N +V       L++   LQ     +S +    P R     + 
Sbjct: 217 PTEALAPLRALQYLRLNDNPWVCDCRARPLWA--WLQKFRGSSSEVPCSLPQRL----AG 270

Query: 531 LKFLDLGQNQIHG 543
                L  N + G
Sbjct: 271 RDLKRLAANDLQG 283

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.3 bits (142), Expect = 4e-10
 Identities = 34/199 (17%), Positives = 57/199 (28%), Gaps = 14/199 (7%)

Query: 128 LDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYV 187
           ++    +     +P       +   L+LS   +       L   + L  L+L    L  +
Sbjct: 15  VNCDKRNLT--ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL 70

Query: 188 DNFWWLSGL-------SFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSL 240
                L  L       + L+ L L    L       +  N+L SL    L          
Sbjct: 71  QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130

Query: 241 LATANFSSLTVLDLSDNQFDKWFIPSW--VFGPIPRGLQNLTSLRHLGLDSNHFNSSIPN 298
           L      +L    L+     +    +   +       L  L +L  L L  N    +IP 
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL-YTIPK 189

Query: 299 WLYRFIHLEYLSLSNNSLQ 317
             +    L +  L  N   
Sbjct: 190 GFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 4e-06
 Identities = 34/224 (15%), Positives = 57/224 (25%), Gaps = 24/224 (10%)

Query: 245 NFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFI 304
             +S   ++                  +P  L        L L  N   +     L  + 
Sbjct: 8   KVASHLEVNCDKRNLTA----------LPPDL--PKDTTILHLSENLLYTFSLATLMPYT 55

Query: 305 HLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGV 364
            L  L+L    L        L  L ++      L             ++ ++    L  +
Sbjct: 56  RLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115

Query: 365 HLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIP 424
            L                N L++L              L     +  L  ANN++  L  
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLP----------PGLLTPTPKLEKLSLANNNLTELPA 165

Query: 425 ESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKL 468
             L  L  L  L + +N L              L +  + GN  
Sbjct: 166 GLLNGLENLDTLLLQENSLYTIPKGFF--GSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 1e-05
 Identities = 35/191 (18%), Positives = 53/191 (27%), Gaps = 13/191 (6%)

Query: 406 FKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDG 465
            K+   L  + N +      +L   + L  L ++  +L           L  L       
Sbjct: 30  PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQL 89

Query: 466 NKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFL 525
             L L  +         V        + S     L     LQ LYL  + +  + P    
Sbjct: 90  QSLPLLGQTLPALTVLDV----SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT 145

Query: 526 KSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLI--SSNLVFLDLSNN 583
            +    K      N    P   L     L  L +  N++         S  L F  L  N
Sbjct: 146 PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

Query: 584 LFSGSISPFLC 594
                  P+LC
Sbjct: 206 -------PWLC 209

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 32/176 (18%), Positives = 58/176 (32%), Gaps = 1/176 (0%)

Query: 724 LQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGE 783
             IL +++N L       +   T + T  +  R+    L +   + V+     S      
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRL-TQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQS 91

Query: 784 MVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLE 843
           +      L  + ++D+S N  +      +  L  LQ L    N      P  +     LE
Sbjct: 92  LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151

Query: 844 SIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGNDL 899
            +  + N L+      ++ L  L+ L L  N+L               +   GN  
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 0.003
 Identities = 40/208 (19%), Positives = 69/208 (33%), Gaps = 19/208 (9%)

Query: 544 PIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETK-S 602
           PI  +++    L ++    N++   P +  +   L LS NL        L      T+ +
Sbjct: 2   PICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 603 LNALQLNDNYLNGELP----------------DCWMSYQNLKTLKLSNNKFTGNLPYSMG 646
           L+  +L    ++G LP                    +   L  L +S N+ T     ++ 
Sbjct: 62  LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 647 SLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILR 706
            L  L  L+L  N L       L     LE L +  N         +      +  L+L+
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN-GLENLDTLLLQ 180

Query: 707 SNKFHGPLPTGLCDLAFLQILDIADNNL 734
            N  +  +P G      L    +  N  
Sbjct: 181 ENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 9e-08
 Identities = 36/213 (16%), Positives = 65/213 (30%), Gaps = 4/213 (1%)

Query: 110 ALVGKINPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLG 169
           + + +          + ++DLS +  +   +         L+ L+L   R+   I + L 
Sbjct: 33  SFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA 92

Query: 170 NLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELR 229
             SNL  L+LS         F   + LS    LD  +++    F    V   +   V   
Sbjct: 93  KNSNLVRLNLSGCSGFS--EFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH-VSET 149

Query: 230 LANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGL-D 288
           +    L  +      +  S  V    +           +     +    L  L+HL L  
Sbjct: 150 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSR 209

Query: 289 SNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTID 321
                      L     L+ L +      GT+ 
Sbjct: 210 CYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ 242

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (113), Expect = 2e-06
 Identities = 36/241 (14%), Positives = 72/241 (29%), Gaps = 5/241 (2%)

Query: 118 SLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRI-GGMIPHHLGNLSNLQF 176
               L     +          Q      S   +++++LS + I    +   L   S LQ 
Sbjct: 16  VTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 75

Query: 177 LDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLH 236
           L L    L        L+  S L  L+L   +    F    + +    L EL        
Sbjct: 76  LSLEGLRLS-DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN--LSWCF 132

Query: 237 HFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSI 296
            F+        +     ++      +              +    +     DS    +  
Sbjct: 133 DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC 192

Query: 297 PNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNL 356
               ++  +L++LSLS            LG + ++  L +   +  +G +     +L +L
Sbjct: 193 FQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF-GIVPDGTLQLLKEALPHL 251

Query: 357 K 357
           +
Sbjct: 252 Q 252

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (113), Expect = 2e-06
 Identities = 46/309 (14%), Positives = 90/309 (29%), Gaps = 49/309 (15%)

Query: 578 LDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKF 637
           LDL+       ++  L      ++ + A +   ++++  L +   S   ++ + LSN+  
Sbjct: 5   LDLTGKNLHPDVTGRLL-----SQGVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVI 58

Query: 638 TGN-LPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGER 696
             + L   +   + L  L L   RLS  I+ +L   + L  L++                
Sbjct: 59  EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS 118

Query: 697 FSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTR 756
               +  +  S  F          +A      I   NLSG   N   +    +       
Sbjct: 119 SCSRLDELNLSWCFDFTEKHVQVAVAH-VSETITQLNLSGYRKNLQKSDLSTLVRRCP-- 175

Query: 757 SVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLK 816
                                              NLV +              E   L 
Sbjct: 176 -----------------------------------NLVHLDLSDSVMLKNDCFQEFFQLN 200

Query: 817 ALQSLNFSY-NSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNN 875
            LQ L+ S            +G + +L+++        G +     +L    HL ++ ++
Sbjct: 201 YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALP---HLQINCSH 257

Query: 876 LTGKIPSST 884
            T     + 
Sbjct: 258 FTTIARPTI 266

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 5e-06
 Identities = 38/234 (16%), Positives = 74/234 (31%), Gaps = 27/234 (11%)

Query: 153 LNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKA 212
           L+L+   +    P   G L +   +                     ++H+DL +  +  +
Sbjct: 5   LDLTGKNL---HPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61

Query: 213 FDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDL------------------ 254
                + ++   L  L L   +L    +   A  S+L  L+L                  
Sbjct: 62  -TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120

Query: 255 -----SDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYL 309
                 +  +   F    V   +    + +T L   G   N   S +   + R  +L +L
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 180

Query: 310 SLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRG 363
            LS++ +      +    L  +  L LS    I       +  +  LK+L + G
Sbjct: 181 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 234

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 5e-04
 Identities = 37/250 (14%), Positives = 70/250 (28%), Gaps = 16/250 (6%)

Query: 309 LSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQ 368
           L L+  +L      +  G L S   +          +      S   ++ ++L    +  
Sbjct: 5   LDLTGKNLHP----DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEV 60

Query: 369 EISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLG 428
               +  I S C    L++L L    +   + + L +  N+V L+ +  S          
Sbjct: 61  S--TLHGILSQCSK--LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL 116

Query: 429 QLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLV----- 483
             S  R+  +N +             +  +S      N               LV     
Sbjct: 117 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPN 176

Query: 484 ---ALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQ 540
                   +  + +      +   +LQ L L          +  L     LK L +    
Sbjct: 177 LVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIV 236

Query: 541 IHGPIPNLTE 550
             G +  L E
Sbjct: 237 PDGTLQLLKE 246

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.6 bits (122), Expect = 9e-08
 Identities = 32/218 (14%), Positives = 70/218 (32%), Gaps = 12/218 (5%)

Query: 122 LKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSS 181
           L +   +    ++            +  +  L+   T +  +    +  L+NL  L+L  
Sbjct: 18  LANAIKIAAGKSNVTDTVT---QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 182 NYLLYVDNFWWLSG--LSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFS 239
           N +  +     L+      L    L++V+       +   +   + +        L +  
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 240 LLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNW 299
           +L         +  L+     ++             L NL+ L  L  D N  +   P  
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190

Query: 300 LYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLS 337
           L    +L  + L NN +        L N +++  + L+
Sbjct: 191 LASLPNLIEVHLKNNQISDVS---PLANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.2 bits (108), Expect = 7e-06
 Identities = 32/214 (14%), Positives = 64/214 (29%), Gaps = 8/214 (3%)

Query: 149 NLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVN 208
           N   +   ++ +   +     +L  +  L      +  ++   +L+ L  LE  D +  +
Sbjct: 20  NAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITD 77

Query: 209 LSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWV 268
           L+   +   +T    S   L+  +      S+      S+               +    
Sbjct: 78  LAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLD 137

Query: 269 FGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNL 328
              I              L   +   S    L     L  L   +N +    D   L +L
Sbjct: 138 LNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKIS---DISPLASL 194

Query: 329 TSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLR 362
            ++  + L  N  I    P  +A+  NL  + L 
Sbjct: 195 PNLIEVHLKNNQ-ISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 36/225 (16%), Positives = 74/225 (32%), Gaps = 18/225 (8%)

Query: 371 SEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQL 430
           + I  IF          +     ++   +T        I TL      +  +  E +  L
Sbjct: 7   TAINVIFPDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI--EGVQYL 62

Query: 431 STLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNC 490
           + L  L + DN++       +   +T+L         ++       I    L +  + + 
Sbjct: 63  NNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV 122

Query: 491 YVGSRFPLWLYSQKHLQFLY------------LVNSSISDIFPIRFLKSASQLKFLDLGQ 538
              +           L  +              ++   + +  +  L + S+L  L    
Sbjct: 123 TPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADD 182

Query: 539 NQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLIS-SNLVFLDLSN 582
           N+I   I  L     L+ + + +N +S   PL + SNL  + L+N
Sbjct: 183 NKISD-ISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 0.001
 Identities = 34/228 (14%), Positives = 78/228 (34%), Gaps = 19/228 (8%)

Query: 647 SLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIG-ERFSRMVVLIL 705
           +L + + +  G++ ++    V+  +   + +L          + T  G +  + ++ L L
Sbjct: 17  ALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGT----GVTTIEGVQYLNNLIGLEL 70

Query: 706 RSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLP 765
           + N+     P           L         AI    +  T  +T+   T          
Sbjct: 71  KDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSN 130

Query: 766 IDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSY 825
           + V          +   ++ +   +  L  +  +S  N        + NL  L +L    
Sbjct: 131 LQV--------LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADD 182

Query: 826 NSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSN 873
           N  +   P  +  + +L  +    NQ+S   P  +++ + L  + L+N
Sbjct: 183 NKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.5 bits (107), Expect = 2e-06
 Identities = 31/134 (23%), Positives = 47/134 (35%), Gaps = 16/134 (11%)

Query: 228 LRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGL 287
           L LA+  L     L       +T LDLS N+                 L  L  L  L  
Sbjct: 3   LHLAHKDLTVLCHLE--QLLLVTHLDLSHNRLRALP----------PALAALRCLEVL-- 48

Query: 288 DSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLN--MGIEGR 345
            ++       + +     L+ L L NN LQ +   + L +   +  L+L  N     EG 
Sbjct: 49  QASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 108

Query: 346 IPRSMASLCNLKSL 359
             R    L ++ S+
Sbjct: 109 QERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.5 bits (107), Expect = 2e-06
 Identities = 27/128 (21%), Positives = 42/128 (32%), Gaps = 15/128 (11%)

Query: 251 VLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLS 310
           VL L+                +   L+ L  + HL L  N   +  P        L  L 
Sbjct: 2   VLHLAHKDLT-----------VLCHLEQLLLVTHLDLSHNRLRALPPA----LAALRCLE 46

Query: 311 LSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGVHLSQEI 370
           +   S     + + + NL  +  L L  N   +    + + S   L  LNL+G  L QE 
Sbjct: 47  VLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 106

Query: 371 SEILDIFS 378
                +  
Sbjct: 107 GIQERLAE 114

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.1 bits (106), Expect = 3e-06
 Identities = 26/113 (23%), Positives = 43/113 (38%), Gaps = 5/113 (4%)

Query: 117 PSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQF 176
             L  L  +++LDLS N  + +       ++  L  L  S   +  +      NL  LQ 
Sbjct: 14  CHLEQLLLVTHLDLSHNRLRALP--PALAALRCLEVLQASDNALENVDGVA--NLPRLQE 69

Query: 177 LDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWL-MVTNKLPSLVEL 228
           L L +N L        L     L  L+L+  +L +       +   LPS+  +
Sbjct: 70  LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.6 bits (97), Expect = 5e-05
 Identities = 24/123 (19%), Positives = 40/123 (32%), Gaps = 8/123 (6%)

Query: 628 KTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVG 687
           + L L++   T      +  L  +  L L  NRL            AL  L+V +     
Sbjct: 1   RVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALP----PALAALRCLEVLQASDNA 54

Query: 688 NIPTWIGERFSRMVVLILRSNKF-HGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLT 746
                      R+  L+L +N+         L     L +L++  N+L          L 
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLA 113

Query: 747 GMV 749
            M+
Sbjct: 114 EML 116

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.2 bits (96), Expect = 8e-05
 Identities = 25/132 (18%), Positives = 38/132 (28%), Gaps = 17/132 (12%)

Query: 175 QFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQ 234
           + L L+   L  + +   L  L  + HLDL    L      L     L       L    
Sbjct: 1   RVLHLAHKDLTVLCH---LEQLLLVTHLDLSHNRLRALPPALAALRCLE-----VLQASD 52

Query: 235 LHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNS 294
               ++   AN   L  L L +N+  +            + L +   L  L L  N    
Sbjct: 53  NALENVDGVANLPRLQELLLCNNRLQQS--------AAIQPLVSCPRLVLLNLQGNSL-C 103

Query: 295 SIPNWLYRFIHL 306
                  R   +
Sbjct: 104 QEEGIQERLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.2 bits (96), Expect = 8e-05
 Identities = 17/116 (14%), Positives = 39/116 (33%), Gaps = 24/116 (20%)

Query: 795 RMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIP--------------------- 833
           R++ ++  + +  +   +  L  +  L+ S+N      P                     
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58

Query: 834 ESIGVMRSLESIDFSANQL-SGEIPESMSSLTFLNHLNLSNNNLTGKIPSSTQLQS 888
           + +  +  L+ +    N+L      + + S   L  LNL  N+L  +     +L  
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (89), Expect = 7e-04
 Identities = 23/110 (20%), Positives = 36/110 (32%), Gaps = 9/110 (8%)

Query: 556 ILSVYSNNMSGPLPLIS-SNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLN 614
           +L +   +++    L     +  LDLS+N            R           L  +   
Sbjct: 2   VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALR-------CLEVLQASDNA 54

Query: 615 GELPDCWMSYQNLKTLKLSNNKFTG-NLPYSMGSLTSLVWLHLGENRLSG 663
            E  D   +   L+ L L NN+         + S   LV L+L  N L  
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.4 bits (86), Expect = 0.001
 Identities = 20/128 (15%), Positives = 43/128 (33%), Gaps = 12/128 (9%)

Query: 532 KFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISP 591
           + L L    +   + +L +   +  L +  N +    P ++  L  L++     +   + 
Sbjct: 1   RVLHLAHKDLTV-LCHLEQLLLVTHLDLSHNRLRALPPALA-ALRCLEVLQASDNALENV 58

Query: 592 FLCYRINETKSLNALQLNDNYLNG-ELPDCWMSYQNLKTLKLSNNKFTG------NLPYS 644
                +   + L    L +N L         +S   L  L L  N           L   
Sbjct: 59  DGVANLPRLQELL---LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

Query: 645 MGSLTSLV 652
           + S++S++
Sbjct: 116 LPSVSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.4 bits (86), Expect = 0.002
 Identities = 23/123 (18%), Positives = 40/123 (32%), Gaps = 8/123 (6%)

Query: 434 RVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVG 493
           RVL +    L       H   L  ++   +  N+L             L  L +      
Sbjct: 1   RVLHLAHKDLT---VLCHLEQLLLVTHLDLSHNRLR----ALPPALAALRCLEVLQASDN 53

Query: 494 SRFPLW-LYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFT 552
           +   +  + +   LQ L L N+ +     I+ L S  +L  L+L  N +           
Sbjct: 54  ALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLA 113

Query: 553 GLL 555
            +L
Sbjct: 114 EML 116

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (114), Expect = 2e-06
 Identities = 20/159 (12%), Positives = 41/159 (25%), Gaps = 14/159 (8%)

Query: 818 LQSLNFSYNSFT-GRIPESIGVMRSLESIDFSANQLSGE----IPESMSSLTFLNHLNLS 872
           +QSL+      +  R  E + +++  + +      L+      I  ++     L  LNL 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 873 NNNLTGKIPS---------STQLQSFDVSSFAGNDLCGAPLPKNCTENVSISEDENGDED 923
           +N L               S ++Q   + +          L        ++ E    D  
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 924 EDEVDHWLYVSAALGFVVGFWCFMGPLLVRRRWRYKYYH 962
             +    L     L                     +   
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 162

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (109), Expect = 1e-05
 Identities = 14/93 (15%), Positives = 31/93 (33%), Gaps = 6/93 (6%)

Query: 791 LNLVRMIDISRNNFSGKIPLEV-TNLKALQSLNFSYNSFTGR----IPESIGVMRSLESI 845
           L++ + +DI     S     E+   L+  Q +       T      I  ++ V  +L  +
Sbjct: 2   LDI-QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 846 DFSANQLSGEIPESMSSLTFLNHLNLSNNNLTG 878
           +  +N+L       +          +   +L  
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (108), Expect = 1e-05
 Identities = 16/97 (16%), Positives = 29/97 (29%), Gaps = 5/97 (5%)

Query: 125 LSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGM----IPHHLGNLSNLQFLDLS 180
           +  LD+   +    +       +   + + L    +       I   L     L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 181 SNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLM 217
           SN L  V     L GL       ++ ++L        
Sbjct: 64  SNELGDVGVHCVLQGL-QTPSCKIQKLSLQNCCLTGA 99

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 2e-05
 Identities = 51/454 (11%), Positives = 104/454 (22%), Gaps = 18/454 (3%)

Query: 304 IHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLN-MGIEG--RIPRSMASLCNLKSLN 360
           + ++ L +    L     +E L  L     + L    +       I  ++     L  LN
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 361 LRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLT-DQLGQFKNIVTLDFANNSI 419
           LR   L       +       S  ++ L L++  + G          + + TL   + S 
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 121

Query: 420 VGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPP 479
             L    L  L    +      +          A   +     +        +       
Sbjct: 122 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 181

Query: 480 FQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQN 539
            +     L      S   L     +           +  I   +       L    LG  
Sbjct: 182 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 241

Query: 540 QIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINE 599
            +    P L   +  L                    V     +          L      
Sbjct: 242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 301

Query: 600 TKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGEN 659
                 L+      +  +  C  +            +    L   +          L + 
Sbjct: 302 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQI------SNNRLEDA 355

Query: 660 RLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRM---VVLILRSNKFHGPLPT 716
            +        +  + L  L + + +   +  + +            L L +N        
Sbjct: 356 GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGIL 415

Query: 717 GLCD-----LAFLQILDIADNNLSGAIPNCINNL 745
            L +        L+ L + D   S  + + +  L
Sbjct: 416 QLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 1e-04
 Identities = 51/465 (10%), Positives = 116/465 (24%), Gaps = 37/465 (7%)

Query: 433 LRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLT-LGVKHDWIPPFQLVALGLRNCY 491
           ++ L I   +L+    A     L +    R+D   LT    K         ++  LR   
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKD--------ISSALRVN- 54

Query: 492 VGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKS----ASQLKFLDLGQNQIHGPIPN 547
                         L  L L ++ + D+     L+     + +++ L L    + G    
Sbjct: 55  ------------PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 102

Query: 548 LTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQ 607
           +   T   + ++   ++S  L   +   +  +   +         L Y      S   L 
Sbjct: 103 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 162

Query: 608 LNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILV 667
                          +    +       +   + P  + +L         +N      +V
Sbjct: 163 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV 222

Query: 668 SLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQIL 727
           + K         +G N+        +          +     +   +    C      + 
Sbjct: 223 ASKASLREL--ALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR 280

Query: 728 DIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDY 787
                       N + +    +   +      Q   L +          S  S     + 
Sbjct: 281 AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR 340

Query: 788 EDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGR----IPESIGVMRSLE 843
             +   +    +                  L+ L  +    +      +  ++    SL 
Sbjct: 341 FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 400

Query: 844 SIDFSANQLSGEIPESMSS-----LTFLNHLNLSNNNLTGKIPSS 883
            +D S N L       +          L  L L +   + ++   
Sbjct: 401 ELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDR 445

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 6e-04
 Identities = 61/457 (13%), Positives = 111/457 (24%), Gaps = 22/457 (4%)

Query: 224 SLVELRLANCQLHHFSLLA-TANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSL 282
            +  L +   +L                V+ L D       +       I   L+   +L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG-----LTEARCKDISSALRVNPAL 57

Query: 283 RHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGI 342
             L L SN       + + + +      +   SLQ    + A   + S +   L     +
Sbjct: 58  AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQEL 117

Query: 343 EGRIPRSMASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQ 402
                    +   L    L       E  ++        S    +  LR+   +  LT  
Sbjct: 118 HLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVS 177

Query: 403 LGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFR 462
                                     +L +  V   N   L G +++        L   +
Sbjct: 178 NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 237

Query: 463 VDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPI 522
           +    +         P  +L  L +  C + ++    L      +      S   +    
Sbjct: 238 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD 297

Query: 523 RFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSN 582
              +   +       Q +                 S         L L  SN    D   
Sbjct: 298 EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV 357

Query: 583 NLFSGSISPFLCYRINETKSLNALQLNDNYLNGE----LPDCWMSYQNLKTLKLSNNKFT 638
                               L  L L D  ++      L    ++  +L+ L LSNN   
Sbjct: 358 R-------ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 410

Query: 639 GNLPYSMGS-----LTSLVWLHLGENRLSGNILVSLK 670
                 +          L  L L +   S  +   L+
Sbjct: 411 DAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQ 447

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 0.002
 Identities = 18/102 (17%), Positives = 32/102 (31%), Gaps = 7/102 (6%)

Query: 173 NLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVT--NKLPSLVELRL 230
           ++Q LD+    L        L  L   + + L    L++A    + +     P+L EL L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 231 ANCQL-----HHFSLLATANFSSLTVLDLSDNQFDKWFIPSW 267
            + +L     H            +  L L +           
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL 104

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 0.003
 Identities = 13/97 (13%), Positives = 29/97 (29%), Gaps = 7/97 (7%)

Query: 572 SSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGE----LPDCWMSYQNL 627
           S ++  LD+     S +    L   +   +    ++L+D  L       +         L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLL---QQCQVVRLDDCGLTEARCKDISSALRVNPAL 57

Query: 628 KTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGN 664
             L L +N+      + +          + +  L   
Sbjct: 58  AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.004
 Identities = 13/79 (16%), Positives = 20/79 (25%), Gaps = 8/79 (10%)

Query: 122 LKHLSYLDLSFNDFQGI---QIPRFFGSMGNLRYLNLSRTRIGGMIPHHLG-----NLSN 173
           L+    + L            I         L  LNL    +G +  H +          
Sbjct: 26  LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCK 85

Query: 174 LQFLDLSSNYLLYVDNFWW 192
           +Q L L +  L        
Sbjct: 86  IQKLSLQNCCLTGAGCGVL 104

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.7 bits (109), Expect = 9e-06
 Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 8/98 (8%)

Query: 796 MIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGE 855
                 N  S +I        +L+ LN S N     +P        LE +  S N L+ E
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLA-E 318

Query: 856 IPESMSSLTFLNHLNLSNNNLTGKIPSSTQLQSFDVSS 893
           +PE   +L     L++  N L         ++   ++S
Sbjct: 319 VPELPQNLK---QLHVEYNPLREFPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.4 bits (103), Expect = 5e-05
 Identities = 52/315 (16%), Positives = 87/315 (27%), Gaps = 24/315 (7%)

Query: 601 KSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENR 660
           +  + L+LN+  L+  LP+      +L++L  S N  T  LP    SL SL+  +     
Sbjct: 38  RQAHELELNNLGLS-SLPELP---PHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKA 92

Query: 661 L------------SGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSN 708
           L            S N L  L        L + + +                +       
Sbjct: 93  LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 709 KFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDV 768
           +    L       A     +         +          +           +L      
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 769 GVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSF 828
             +L     +    E ++  D              F        + L  L    +  N+ 
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272

Query: 829 TGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSSTQLQS 888
           +  I     +  SLE ++ S N+L  E+P     L     L  S N+L         L+ 
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLE---RLIASFNHLAEVPELPQNLKQ 328

Query: 889 FDVSSFAGNDLCGAP 903
             V     N L   P
Sbjct: 329 LHVE---YNPLREFP 340

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.1 bits (97), Expect = 3e-04
 Identities = 45/328 (13%), Positives = 94/328 (28%), Gaps = 26/328 (7%)

Query: 380 CVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRIN 439
           C+      L+L +  +   L +      ++ +L  + NS+  L PE    L +L V   N
Sbjct: 35  CLDRQAHELELNNLGL-SSLPELPP---HLESLVASCNSLTEL-PELPQSLKSLLVDNNN 89

Query: 440 DNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLW 499
              L+     + +  ++     ++   + +  +K   +    L  L      +       
Sbjct: 90  LKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGN 149

Query: 500 LYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSV 559
              ++  +   L   +          K       L+      +             + ++
Sbjct: 150 NQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTI 209

Query: 560 YSNNMSGPLPLISSNLVFLDLSNNLFSGSISP---------FLCYRINETKSLNALQLND 610
           Y++N            +      + +   +                 +    L       
Sbjct: 210 YADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYL 269

Query: 611 NYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLK 670
           N  + E+        +L+ L +SNNK    LP     L  L          S N L  + 
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERL--------IASFNHLAEVP 320

Query: 671 N-CTALESLDVGENEF--VGNIPTWIGE 695
                L+ L V  N      +IP  + +
Sbjct: 321 ELPQNLKQLHVEYNPLREFPDIPESVED 348

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.0 bits (94), Expect = 6e-04
 Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 21/100 (21%)

Query: 214 DWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIP 273
           +   + +  PSL EL ++N +L        A    L  L  S N   +          +P
Sbjct: 275 EIRSLCDLPPSLEELNVSNNKLIELP----ALPPRLERLIASFNHLAE----------VP 320

Query: 274 RGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSN 313
              QNL  L    ++ N      P+       +E L +++
Sbjct: 321 ELPQNLKQLH---VEYNPL-REFPDIPE---SVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.0 bits (89), Expect = 0.002
 Identities = 22/143 (15%), Positives = 36/143 (25%), Gaps = 14/143 (9%)

Query: 64  SWSGNGDCCAWAGVFCDNITGHVLHLDLRNPFNYHKESEYEAIRRTALVGKINPSLLDLK 123
           S         +     +            N F+   E         A   +I        
Sbjct: 225 SLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPP 284

Query: 124 HLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNY 183
            L  L++S N    +           L  L  S   +   +P       NL+ L +  N 
Sbjct: 285 SLEELNVSNNKLIELP-----ALPPRLERLIASFNHLAE-VPELPQ---NLKQLHVEYNP 335

Query: 184 LLYVDNFWWLSGLSFLEHLDLRS 206
           L    +         +E L + S
Sbjct: 336 LREFPDI-----PESVEDLRMNS 353

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 44.0 bits (102), Expect = 2e-05
 Identities = 36/170 (21%), Positives = 64/170 (37%), Gaps = 8/170 (4%)

Query: 571 ISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTL 630
           I  +   L L++N      S            L  L+L  N L G  P+ +    +++ L
Sbjct: 27  IPLHTTELLLNDNELGRISS---DGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQEL 83

Query: 631 KLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIP 690
           +L  NK           L  L  L+L +N++S  +  S ++  +L SL++  N F  N  
Sbjct: 84  QLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143

Query: 691 TWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPN 740
                 + R   L   + +   P       +  +QI D+  +    +  N
Sbjct: 144 LAWFAEWLRKKSLNGGAARCGAPSK-----VRDVQIKDLPHSEFKCSSEN 188

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.9 bits (99), Expect = 6e-05
 Identities = 32/163 (19%), Positives = 54/163 (33%), Gaps = 3/163 (1%)

Query: 423 IPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQL 482
           IP  +        L +NDN+L    S   F  L  L    +  N+LT    + +     +
Sbjct: 23  IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI 80

Query: 483 VALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIH 542
             L L    +             L+ L L ++ IS + P    +  + L  L+L  N  +
Sbjct: 81  QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP-GSFEHLNSLTSLNLASNPFN 139

Query: 543 GPIPNLTEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLF 585
                      L   S+         P    ++   DL ++ F
Sbjct: 140 CNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEF 182

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 44.1 bits (102), Expect = 5e-05
 Identities = 42/334 (12%), Positives = 103/334 (30%), Gaps = 15/334 (4%)

Query: 120 LDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGG----MIPHHLGNLSNLQ 175
           ++ K L    ++  D +   +        +++ + LS   IG      +  ++ +  +L+
Sbjct: 5   IEGKSLKLDAITTEDEK--SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 62

Query: 176 FLDLSSNYLLYVDNFWWLSGLSFLE-HLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQ 234
             + S  +   V +    +    L+  L    ++  +  D          L++    +  
Sbjct: 63  IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 122

Query: 235 LHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNS 294
           L H  L                 Q       +    P+   +     L +  +       
Sbjct: 123 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 182

Query: 295 SIPNWLYRFIHLEYLSLSNNSLQGTIDS-EALGNLTSISWLDLSLNMGIEGRIPRSMASL 353
                L+    ++            ++       L  +   D +        +  ++ S 
Sbjct: 183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 242

Query: 354 CNLKSLNLRGVHLSQEI-SEILDIFSGCVSNGLESLDLRSDSIYGHLTDQL-----GQFK 407
            NL+ L L    LS    + ++D FS   + GL++L L+ + I       L      +  
Sbjct: 243 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP 302

Query: 408 NIVTLDFANNSIVGLIPESLGQLSTLRVLRINDN 441
           +++ L+   N       + + ++  +   R    
Sbjct: 303 DLLFLELNGNRF-SEEDDVVDEIREVFSTRGRGE 335

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.8 bits (96), Expect = 3e-04
 Identities = 43/321 (13%), Positives = 98/321 (30%), Gaps = 31/321 (9%)

Query: 385 LESLDLRSDSI----YGHLTDQLGQFKNIVTLDFANNSI----VGLIPESLGQLSTLRVL 436
           +E   L+ D+I       +   L +  ++  +  + N+I       + E++     L + 
Sbjct: 5   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 64

Query: 437 RINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRF 496
             +D         I  A    L          T+ +  +   P     L           
Sbjct: 65  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 124

Query: 497 PLWLYSQKHL-QFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNLTEFTGLL 555
            L+L++     Q    +  ++ ++   +  K+A  L+ +  G+N++              
Sbjct: 125 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE------- 177

Query: 556 ILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNG 615
               ++        L +  +V   +        +   L Y               +  + 
Sbjct: 178 ----WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS 233

Query: 616 ELPDCWMSYQNLKTLKLSNNKFTGNLPYSMG------SLTSLVWLHLGENRLSGNILVSL 669
            L     S+ NL+ L L++   +     ++           L  L L  N +  + + +L
Sbjct: 234 ALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL 293

Query: 670 -----KNCTALESLDVGENEF 685
                +    L  L++  N F
Sbjct: 294 KTVIDEKMPDLLFLELNGNRF 314

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.9 bits (91), Expect = 0.001
 Identities = 36/322 (11%), Positives = 91/322 (28%), Gaps = 33/322 (10%)

Query: 599 ETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGN----LPYSMGSLTSLVWL 654
           E KSL    +        +    +   ++K + LS N         L  ++ S   L   
Sbjct: 6   EGKSLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 64

Query: 655 HLGENRLS----------GNILVSLKNCTALESLDVGENEFVGNIPTWIGE----RFSRM 700
              +                +L +L  C  L ++ + +N F       + +         
Sbjct: 65  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 124

Query: 701 VVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQ 760
            + +  +             L  L +   A N        C  N     +   + ++ Q 
Sbjct: 125 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 184

Query: 761 YLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFS---GKIPLEVTNLKA 817
           +  L     V    +   +    +        L  +              + + + +   
Sbjct: 185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 244

Query: 818 LQSLNFSYNSFTGRIPESIGVM------RSLESIDFSANQLSGEIPESMSS-----LTFL 866
           L+ L  +    + R   ++           L+++    N++  +   ++ +     +  L
Sbjct: 245 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL 304

Query: 867 NHLNLSNNNLTGKIPSSTQLQS 888
             L L+ N  + +     +++ 
Sbjct: 305 LFLELNGNRFSEEDDVVDEIRE 326

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.9 bits (91), Expect = 0.001
 Identities = 48/316 (15%), Positives = 82/316 (25%), Gaps = 42/316 (13%)

Query: 115 INPSLLDLKHLSYLDLSFNDFQG---IQIPRFFGSMGNLRYLNLS---RTRIGGMIPHHL 168
           +   LL+   +  + LS N         +     S  +L     S     R+   IP  L
Sbjct: 23  VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL 82

Query: 169 GNLSNLQF---------------------LDLSSNYLLYVDNFWWLSGLSFLEHLDLRSV 207
             L                            +            +L           +  
Sbjct: 83  RLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA 142

Query: 208 NLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSW 267
              +           P L  +     +L + S+   A       L  +         P  
Sbjct: 143 RALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEG 202

Query: 268 VFGPIPRGLQNLTSLRHLGLD---------SNHFNSSIPNWLYRFIHLEYLSLSNNSLQG 318
           +   +  GL     L+ L L          S    +       R + L    LS      
Sbjct: 203 IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 262

Query: 319 TIDSEALGNLTSISWLDLSLNMGIEGRIPRSMAS-----LCNLKSLNLRGVHLSQEISEI 373
            +D+ +      +  L L  N  IE    R++ +     + +L  L L G   S+E   +
Sbjct: 263 VVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVV 321

Query: 374 LDIFSGCVSNGLESLD 389
            +I     + G   LD
Sbjct: 322 DEIREVFSTRGRGELD 337

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 8e-05
 Identities = 31/170 (18%), Positives = 61/170 (35%), Gaps = 8/170 (4%)

Query: 147 MGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRS 206
           + ++  +  + + I  +    +  L N+  L L+ N L  +     L  L +L   + + 
Sbjct: 45  LNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKV 102

Query: 207 VNLSKAFDWLMVTNKLP---SLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWF 263
            +LS   D   + +       + ++          SL    N  +   +     + D   
Sbjct: 103 KDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLS 162

Query: 264 IPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSN 313
           +       I   L  LT L++L L  NH  S +   L    +L+ L L +
Sbjct: 163 LEDNQISDIV-PLAGLTKLQNLYLSKNHI-SDLRA-LAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 4e-04
 Identities = 32/194 (16%), Positives = 62/194 (31%), Gaps = 15/194 (7%)

Query: 149 NLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVN 208
                NL +  +   +      L+++  +  +++ +    +   +  L  +  L L    
Sbjct: 25  ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDI---KSVQGIQYLPNVTKLFLNGNK 79

Query: 209 LS-----KAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWF 263
           L+          L       + V+   +   L     L+  +     +  L      +  
Sbjct: 80  LTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESL 139

Query: 264 IPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSE 323
                       L  LT L  L L+ N  +  +P  L     L+ L LS N +    D  
Sbjct: 140 YLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS---DLR 194

Query: 324 ALGNLTSISWLDLS 337
           AL  L ++  L+L 
Sbjct: 195 ALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 6e-04
 Identities = 32/198 (16%), Positives = 60/198 (30%), Gaps = 14/198 (7%)

Query: 170 NLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELR 229
             +     +L       V +    + L+ ++ +   + ++      +     LP++ +L 
Sbjct: 22  AFAETIKDNLKKKS---VTDAVTQNELNSIDQIIANNSDIK----SVQGIQYLPNVTKLF 74

Query: 230 LANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDS 289
           L   +L     LA         LD +  +             +      ++ +  L    
Sbjct: 75  LNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLP 134

Query: 290 NHFNSSIPNWLY----RFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGR 345
              +  + N           L  L   +       D   L  LT +  L LS N  I   
Sbjct: 135 QLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNH-ISD- 192

Query: 346 IPRSMASLCNLKSLNLRG 363
             R++A L NL  L L  
Sbjct: 193 -LRALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.8 bits (89), Expect = 0.002
 Identities = 39/206 (18%), Positives = 71/206 (34%), Gaps = 23/206 (11%)

Query: 371 SEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQL 430
           + I  IFS          +L+  S+   +T    +  +I  +   N+ I  +    +  L
Sbjct: 12  TPIKQIFSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYL 67

Query: 431 STLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGLRNC 490
             +  L +N NKL         ANL  L W  +D NK+        +   + ++L     
Sbjct: 68  PNVTKLFLNGNKLTDI---KPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGI 124

Query: 491 YVGSRFPLW---------------LYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLD 535
              +                    +     L  L  ++   + I  I  L   ++L+ L 
Sbjct: 125 SDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLY 184

Query: 536 LGQNQIHGPIPNLTEFTGLLILSVYS 561
           L +N I   +  L     L +L ++S
Sbjct: 185 LSKNHISD-LRALAGLKNLDVLELFS 209

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (98), Expect = 1e-04
 Identities = 28/214 (13%), Positives = 56/214 (26%), Gaps = 10/214 (4%)

Query: 149 NLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVN 208
           N   L    T++  +         +L+ +++S N +L V      S L  L  + +   N
Sbjct: 30  NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 89

Query: 209 LSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWV 268
                +     N              L   +           +  L     D     +  
Sbjct: 90  NLLYINPEAFQNLPN--------LQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH 141

Query: 269 FGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNL 328
                  +        L L+ N                E     NN+    + ++     
Sbjct: 142 TIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNN-LEELPNDVFHGA 200

Query: 329 TSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLR 362
           +    LD+S    I       + +L  L++ +  
Sbjct: 201 SGPVILDISRTR-IHSLPSYGLENLKKLRARSTY 233

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 5e-04
 Identities = 19/209 (9%), Positives = 42/209 (20%), Gaps = 17/209 (8%)

Query: 123 KHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMI---------------PHH 167
           ++   L       + I     F   G+L  + +S+  +  +I                  
Sbjct: 29  RNAIELRFVLTKLRVI-QKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 87

Query: 168 LGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVE 227
             NL  +      +   L              +   + S+          +         
Sbjct: 88  ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS 147

Query: 228 LRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRG-LQNLTSLRHLG 286
               + +     L                   +     +     +P       +    L 
Sbjct: 148 FVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD 207

Query: 287 LDSNHFNSSIPNWLYRFIHLEYLSLSNNS 315
           +     +S     L     L   S  N  
Sbjct: 208 ISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 0.002
 Identities = 37/219 (16%), Positives = 66/219 (30%), Gaps = 13/219 (5%)

Query: 406 FKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTL--SAIHFANLTKLSWFRV 463
            +N + L F    +  +   +      L  + I+ N +   +                  
Sbjct: 28  PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 87

Query: 464 DGNKLTLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIR 523
             N L +  +     P     L              ++S + +      N +I  I    
Sbjct: 88  ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS 147

Query: 524 FLKSASQLKFLDLGQNQIHGPIPNLTEFTGLLILSVYSNNMSGPLPLIS----SNLVFLD 579
           F+  + +   L L +N I          T L  L++  NN    LP       S  V LD
Sbjct: 148 FVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD 207

Query: 580 LSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELP 618
           +S      S+  +        ++L  L+    Y   +LP
Sbjct: 208 ISRTRIH-SLPSYGL------ENLKKLRARSTYNLKKLP 239

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 5e-04
 Identities = 23/186 (12%), Positives = 57/186 (30%), Gaps = 5/186 (2%)

Query: 149 NLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVN 208
                 L +T +   +     +L  +  L      +  +D   +L+ L+ +   + +  +
Sbjct: 19  EKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD 76

Query: 209 LSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWV 268
           ++   +   + + L +  ++       +  +L     F++                    
Sbjct: 77  ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELS 136

Query: 269 FGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNL 328
              I              L+ +    +    L     LE L +S+N +    D   L  L
Sbjct: 137 SNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVS---DISVLAKL 193

Query: 329 TSISWL 334
           T++  L
Sbjct: 194 TNLESL 199

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (91), Expect = 6e-04
 Identities = 27/149 (18%), Positives = 42/149 (28%), Gaps = 13/149 (8%)

Query: 138 IQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLS 197
           I+    + +    R L+L   +I  +I +    L     +D S N +        L G  
Sbjct: 8   IEQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI------RKLDGFP 60

Query: 198 FLEHLDLRSVNLSKAFDWL-MVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSD 256
            L  L    VN ++       +   LP L EL L N  L     L               
Sbjct: 61  LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 120

Query: 257 NQFDKWFIPSWVFGPIPRGLQNLTSLRHL 285
                              +  +  +R L
Sbjct: 121 RNPVTNKKHYR-----LYVIYKVPQVRVL 144

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 0.001
 Identities = 25/116 (21%), Positives = 48/116 (41%), Gaps = 4/116 (3%)

Query: 114 KINPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSN 173
            I      L     +D S N+ + +     F  +  L+ L ++  RI  +       L +
Sbjct: 32  VIENLGATLDQFDAIDFSDNEIRKLD---GFPLLRRLKTLLVNNNRICRIGEGLDQALPD 88

Query: 174 LQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDW-LMVTNKLPSLVEL 228
           L  L L++N L+ + +   L+ L  L +L +    ++    + L V  K+P +  L
Sbjct: 89  LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVL 144

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 10/58 (17%), Positives = 17/58 (29%), Gaps = 1/58 (1%)

Query: 276 LQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISW 333
             N    R L L        I N        + +  S+N ++       L  L ++  
Sbjct: 14  YTNAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLV 70

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 0.002
 Identities = 25/147 (17%), Positives = 41/147 (27%), Gaps = 6/147 (4%)

Query: 139 QIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSF 198
           Q+        +     L    +       L   +    L+  S+    +        +  
Sbjct: 11  QLKLIMSKRYDGSQQALDLKGLR--SDPDLVAQNIDVVLNRRSSMAATLRI--IEENIPE 66

Query: 199 LEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQ 258
           L  L+L +  L +  D   +  K P+L  L L+  +L     L       L  L L  N 
Sbjct: 67  LLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNS 126

Query: 259 FDKWFIPSWVFGPIPRGLQNLTSLRHL 285
               F        I    +    L  L
Sbjct: 127 LSDTFRDQ--STYISAIRERFPKLLRL 151

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	979
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.89
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.85
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.76
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.75
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.74
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.71
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.71
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.7
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.66
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.64
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.64
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.63
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.63
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.61
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.61
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.54
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.52
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.43
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.41
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.4
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.39
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.39
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.37
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.16
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.14
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.11
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.95
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.16
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.09
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.46
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.43
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.77
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.66

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=3e-37  Score=334.82  Aligned_cols=293  Identities=34%  Similarity=0.566  Sum_probs=189.3

Q ss_pred             CCCHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCcc--ccceeccCCC--CcEEEEECCCCCCCCchhhHHHhhcccccc-
Q 042359           39 GCLGSEKEALLSFKRDLKDPSNRLASWSGNGDCCA--WAGVFCDNIT--GHVLHLDLRNPFNYHKESEYEAIRRTALVG-  113 (979)
Q Consensus        39 ~c~~~~~~~ll~~k~~~~~~~~~l~~W~~~~~~c~--w~gv~c~~~~--~~v~~L~L~~~~~~~~~~~~~~~~~~~l~~-  113 (979)
                      .|.++|++||++||+++.+|. .+++|..++|||.  |+||+|+...  +||++|||++               +.+.| 
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~-~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~---------------~~l~g~   65 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG---------------LNLPKP   65 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEEC---------------CCCSSC
T ss_pred             CCCHHHHHHHHHHHHHCCCCC-cCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCC---------------CCCCCC
Confidence            499999999999999998874 6999998899994  9999998543  4899999998               36666 


Q ss_pred             -cccccccCCCCCCEEeCCC-CCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccc
Q 042359          114 -KINPSLLDLKHLSYLDLSF-NDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFW  191 (979)
Q Consensus       114 -~~~~~l~~l~~L~~L~Ls~-n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~  191 (979)
                       .+|+++++|++|++|+|++ |++++. +|+.|+++++|++|+|++|++.+..|..+..+.+|+++++++|.+       
T Consensus        66 ~~lp~~l~~L~~L~~L~Ls~~N~l~g~-iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~-------  137 (313)
T d1ogqa_          66 YPIPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL-------  137 (313)
T ss_dssp             EECCGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEE-------
T ss_pred             CCCChHHhcCccccccccccccccccc-cccccccccccchhhhccccccccccccccchhhhcccccccccc-------
Confidence             4677888888888888876 677764 777788888888888888877776666666666666666655532       


Q ss_pred             cccCCCCCCEEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCccccc
Q 042359          192 WLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGP  271 (979)
Q Consensus       192 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~  271 (979)
                                                                                          .         +.
T Consensus       138 --------------------------------------------------------------------~---------~~  140 (313)
T d1ogqa_         138 --------------------------------------------------------------------S---------GT  140 (313)
T ss_dssp             --------------------------------------------------------------------E---------SC
T ss_pred             --------------------------------------------------------------------c---------cc
Confidence                                                                                2         23


Q ss_pred             CCccccCCCCCCEEeccCCcCcccCchhhccCCCC-CEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCcccc
Q 042359          272 IPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHL-EYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSM  350 (979)
Q Consensus       272 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L-~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l  350 (979)
                      +|..+.++++|+++++++|.+.+.+|..+..+..+ +.+++++|++++.. +..+..+..+ .++++.+ ...+.+|..+
T Consensus       141 ~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~-~~~~~~l~~~-~l~l~~~-~~~~~~~~~~  217 (313)
T d1ogqa_         141 LPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI-PPTFANLNLA-FVDLSRN-MLEGDASVLF  217 (313)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEEC-CGGGGGCCCS-EEECCSS-EEEECCGGGC
T ss_pred             CchhhccCcccceeeccccccccccccccccccccccccccccccccccc-cccccccccc-ccccccc-cccccccccc
Confidence            44555555555555555555555555555555444 55666666665444 4455544433 4666666 5666666666


Q ss_pred             cCCCCCCeeeccCccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCCCCcEEeccCCcCcccCcccccCC
Q 042359          351 ASLCNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQL  430 (979)
Q Consensus       351 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l  430 (979)
                      ..+++++.+++++|.+.+.++.     ++..+. ++.|++++|++++.+|.+++++++|++|+|++|+++|.+|. ++++
T Consensus       218 ~~~~~l~~l~~~~~~l~~~~~~-----~~~~~~-L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L  290 (313)
T d1ogqa_         218 GSDKNTQKIHLAKNSLAFDLGK-----VGLSKN-LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNL  290 (313)
T ss_dssp             CTTSCCSEEECCSSEECCBGGG-----CCCCTT-CCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTG
T ss_pred             cccccccccccccccccccccc-----cccccc-cccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccC
Confidence            6666666666666665554432     112222 55555555555555555555555555555555555555553 3445


Q ss_pred             CCCCEEEcCCCc
Q 042359          431 STLRVLRINDNK  442 (979)
Q Consensus       431 ~~L~~L~L~~n~  442 (979)
                      ++|+.+++++|+
T Consensus       291 ~~L~~l~l~~N~  302 (313)
T d1ogqa_         291 QRFDVSAYANNK  302 (313)
T ss_dssp             GGSCGGGTCSSS
T ss_pred             CCCCHHHhCCCc
Confidence            555555555554

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=1e-32  Score=298.91  Aligned_cols=257  Identities=31%  Similarity=0.553  Sum_probs=230.5

Q ss_pred             cccEEeccCccccc--cCCccccCCCCCCEEEccC-CcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEE
Q 042359          602 SLNALQLNDNYLNG--ELPDCWMSYQNLKTLKLSN-NKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESL  678 (979)
Q Consensus       602 ~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  678 (979)
                      .++.|+|++|.+.|  .+|..++++++|++|+|++ |+++|.+|..|+++++|++|++++|++.+..+..+..+..|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            57778888887776  4788889999999999986 78888899999999999999999999998888888899999999


Q ss_pred             eccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCc-cEEEccCCccccccCcchhhcccCccccccccc
Q 042359          679 DVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFL-QILDIADNNLSGAIPNCINNLTGMVTACSFTRS  757 (979)
Q Consensus       679 ~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L-~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~  757 (979)
                      ++++|.+.+.+|.++. .++.++.+++++|.+.+.+|..+..+..+ +.+++++|++++..|..+.++..          
T Consensus       131 ~l~~N~~~~~~p~~l~-~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~----------  199 (313)
T d1ogqa_         131 DFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL----------  199 (313)
T ss_dssp             ECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC----------
T ss_pred             ccccccccccCchhhc-cCcccceeecccccccccccccccccccccccccccccccccccccccccccc----------
Confidence            9999999988998887 78999999999999999999988888776 88999999999998887765432          


Q ss_pred             ccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCC
Q 042359          758 VQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIG  837 (979)
Q Consensus       758 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~  837 (979)
                                                           ..++++++.+.|.+|..++.+++++.+++++|.+++.+| .++
T Consensus       200 -------------------------------------~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~  241 (313)
T d1ogqa_         200 -------------------------------------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVG  241 (313)
T ss_dssp             -------------------------------------SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCC
T ss_pred             -------------------------------------ccccccccccccccccccccccccccccccccccccccc-ccc
Confidence                                                 468999999999999999999999999999999998776 588


Q ss_pred             ccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCcccccCCCCccCCCccccccCCC-CCCCCCCCCCC
Q 042359          838 VMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSSTQLQSFDVSSFAGN-DLCGAPLPKNC  908 (979)
Q Consensus       838 ~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~lcg~~~~~~c  908 (979)
                      .+++|+.|||++|+++|.+|++++++++|++|||++|+|+|.||+...++.++..++.+| .+||.|++ .|
T Consensus       242 ~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp-~c  312 (313)
T d1ogqa_         242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             cccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCCCCC-CC
Confidence            899999999999999999999999999999999999999999999888999999999999 69999875 66

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=7.2e-25  Score=244.45  Aligned_cols=192  Identities=27%  Similarity=0.410  Sum_probs=131.0

Q ss_pred             cccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhc
Q 042359          620 CWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSR  699 (979)
Q Consensus       620 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~  699 (979)
                      .+..+++++.+++++|.+++..|  +...++|++|++++|.++.  ++.+..+++|+.|++++|.+++ ++. +. .+++
T Consensus       192 ~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~~-~~~-~~-~~~~  264 (384)
T d2omza2         192 VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN-LAP-LS-GLTK  264 (384)
T ss_dssp             GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CGG-GT-TCTT
T ss_pred             ccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC--cchhhcccccchhccccCccCC-CCc-cc-cccc
Confidence            34555666666666666664433  3445566666666666653  2345666677777777776664 222 22 4667


Q ss_pred             cceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEe
Q 042359          700 MVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVV  779 (979)
Q Consensus       700 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  779 (979)
                      |+.|++++|++++..  .+..++.++.+++++|.+.+.  ..+..++                                 
T Consensus       265 L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~~~~---------------------------------  307 (384)
T d2omza2         265 LTELKLGANQISNIS--PLAGLTALTNLELNENQLEDI--SPISNLK---------------------------------  307 (384)
T ss_dssp             CSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC--GGGGGCT---------------------------------
T ss_pred             CCEeeccCcccCCCC--ccccccccccccccccccccc--cccchhc---------------------------------
Confidence            777777777776433  256677788888888877641  1222222                                 


Q ss_pred             ecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCC
Q 042359          780 SKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPES  859 (979)
Q Consensus       780 ~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~  859 (979)
                                   .++.|++++|++++..|  +..+++|+.|++++|++++ +| .++++++|++||+++|++++.+|  
T Consensus       308 -------------~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--  368 (384)
T d2omza2         308 -------------NLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--  368 (384)
T ss_dssp             -------------TCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--
T ss_pred             -------------ccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--
Confidence                         33778888888886433  7788899999999999884 54 58888999999999999987655  


Q ss_pred             CCCCCCCCEEEccCC
Q 042359          860 MSSLTFLNHLNLSNN  874 (979)
Q Consensus       860 l~~l~~L~~L~ls~N  874 (979)
                      ++++++|+.|+|++|
T Consensus       369 l~~l~~L~~L~L~~N  383 (384)
T d2omza2         369 LANLTRITQLGLNDQ  383 (384)
T ss_dssp             GTTCTTCSEEECCCE
T ss_pred             hccCCCCCEeeCCCC
Confidence            788899999999887

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.93  E-value=4.5e-25  Score=246.14  Aligned_cols=356  Identities=23%  Similarity=0.293  Sum_probs=243.2

Q ss_pred             ECcCCcCccccccccCCCCCCcEEeccCCcCcccCcccccCCCCCCEEEcCCCcCccccChhhhcCCCCCcEEEccCCcc
Q 042359          389 DLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPESLGQLSTLRVLRINDNKLNGTLSAIHFANLTKLSWFRVDGNKL  468 (979)
Q Consensus       389 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l  468 (979)
                      .++...+++.+.  ...+.+|++|+++++.|+..  +.+..+++|++|++++|+++ .++  .+.++++|++|++++|.+
T Consensus        28 ~l~~~~~~~~~~--~~~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~-~l~--~l~~L~~L~~L~L~~n~i  100 (384)
T d2omza2          28 VLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT-DIT--PLKNLTKLVDILMNNNQI  100 (384)
T ss_dssp             HTTCSSTTSEEC--HHHHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCC-CCG--GGTTCTTCCEEECCSSCC
T ss_pred             HhCCCCCCCccC--HHHhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCC-CCc--cccCCccccccccccccc
Confidence            455555555443  34567889999999988854  45788899999999999987 444  377888888888888876


Q ss_pred             cccccCCCCCcccccEEecccccCCCCCChhhhCCCCccEEEccCCCCCCCCchHHHhcCCCccEEEcccCcCCCCCCCc
Q 042359          469 TLGVKHDWIPPFQLVALGLRNCYVGSRFPLWLYSQKHLQFLYLVNSSISDIFPIRFLKSASQLKFLDLGQNQIHGPIPNL  548 (979)
Q Consensus       469 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~l  548 (979)
                      ...                         + .+..+++|+.|+++++.+.+..+..   ....+.......|.+....+..
T Consensus       101 ~~i-------------------------~-~l~~l~~L~~L~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~  151 (384)
T d2omza2         101 ADI-------------------------T-PLANLTNLTGLTLFNNQITDIDPLK---NLTNLNRLELSSNTISDISALS  151 (384)
T ss_dssp             CCC-------------------------G-GGTTCTTCCEEECCSSCCCCCGGGT---TCTTCSEEEEEEEEECCCGGGT
T ss_pred             ccc-------------------------c-ccccccccccccccccccccccccc---cccccccccccccccccccccc
Confidence            531                         1 2566788889999888888765432   3445666776666655433211


Q ss_pred             ccccCCcEEEeecccCCCCCCccCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCC
Q 042359          549 TEFTGLLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLK  628 (979)
Q Consensus       549 ~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  628 (979)
                       .................................|......      ....+++++.+++++|.+++..|  +..+++|+
T Consensus       152 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~  222 (384)
T d2omza2         152 -GLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS------VLAKLTNLESLIATNNQISDITP--LGILTNLD  222 (384)
T ss_dssp             -TCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG------GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCC
T ss_pred             -ccccccccccccccchhhhhcccccccccccccccccccc------ccccccccceeeccCCccCCCCc--ccccCCCC
Confidence             1111111111111111111111233444445544433211      22447888899999998886644  45677899


Q ss_pred             EEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCC
Q 042359          629 TLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSN  708 (979)
Q Consensus       629 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n  708 (979)
                      +|++++|+++. + ..+..+++|+.|++++|.+++..+  +..+++|++|++++|++++ ++.. . .++.++.+.++.|
T Consensus       223 ~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~-~~~~-~-~~~~l~~l~~~~n  295 (384)
T d2omza2         223 ELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN-ISPL-A-GLTALTNLELNEN  295 (384)
T ss_dssp             EEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCC-CGGG-T-TCTTCSEEECCSS
T ss_pred             EEECCCCCCCC-c-chhhcccccchhccccCccCCCCc--ccccccCCEeeccCcccCC-CCcc-c-ccccccccccccc
Confidence            99999998874 3 367788899999999998886443  7788899999999998874 4432 2 5788888999988


Q ss_pred             cccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhh
Q 042359          709 KFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYE  788 (979)
Q Consensus       709 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  788 (979)
                      .+++.  ..+..+++++.|++++|++++..|  +..+++                                         
T Consensus       296 ~l~~~--~~~~~~~~l~~L~ls~n~l~~l~~--l~~l~~-----------------------------------------  330 (384)
T d2omza2         296 QLEDI--SPISNLKNLTYLTLYFNNISDISP--VSSLTK-----------------------------------------  330 (384)
T ss_dssp             CCSCC--GGGGGCTTCSEEECCSSCCSCCGG--GGGCTT-----------------------------------------
T ss_pred             ccccc--cccchhcccCeEECCCCCCCCCcc--cccCCC-----------------------------------------
Confidence            88753  347778889999999998875432  444444                                         


Q ss_pred             hhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCC
Q 042359          789 DILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSAN  850 (979)
Q Consensus       789 ~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N  850 (979)
                           |+.|++++|++++ +| .++++++|+.|++++|++++.+|  ++++++|+.|+|++|
T Consensus       331 -----L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         331 -----LQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             -----CCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             -----CCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence                 3889999998884 44 58889999999999999987655  788899999999987

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=4.1e-23  Score=221.78  Aligned_cols=271  Identities=17%  Similarity=0.240  Sum_probs=215.3

Q ss_pred             CcEEEeecccCCCCCCccCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEcc
Q 042359          554 LLILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLS  633 (979)
Q Consensus       554 L~~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls  633 (979)
                      .+.++.+++.++..++..++++++|++++|+++...+..    +.++++|++|++++|.+....|..|.++++|++|+++
T Consensus        12 ~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~----f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          12 LRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGD----FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             TTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTT----TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhH----hhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            344455555555444444678999999999887655433    4558999999999999998878889999999999999


Q ss_pred             CCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCccc--ccCChhHHHhhhccceeeccCCccc
Q 042359          634 NNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFV--GNIPTWIGERFSRMVVLILRSNKFH  711 (979)
Q Consensus       634 ~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~--~~ip~~~~~~l~~L~~L~L~~n~l~  711 (979)
                      +|+++ .+|..+  ...++.|++.+|.+.+..+..+.....+..++...|...  +..+..+. .+++|+.+++++|.+.
T Consensus        88 ~n~l~-~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~-~l~~L~~l~l~~n~l~  163 (305)
T d1xkua_          88 KNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ-GMKKLSYIRIADTNIT  163 (305)
T ss_dssp             SSCCS-BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGG-GCTTCCEEECCSSCCC
T ss_pred             CCccC-cCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccc-cccccCccccccCCcc
Confidence            99998 566544  358899999999999877777888888999999888654  22344443 6889999999999887


Q ss_pred             CCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhc
Q 042359          712 GPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDIL  791 (979)
Q Consensus       712 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  791 (979)
                       .+|..+  +++|+.|++++|..++..|..+.+++.+                                           
T Consensus       164 -~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l-------------------------------------------  197 (305)
T d1xkua_         164 -TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNL-------------------------------------------  197 (305)
T ss_dssp             -SCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTC-------------------------------------------
T ss_pred             -ccCccc--CCccCEEECCCCcCCCCChhHhhccccc-------------------------------------------
Confidence             455443  5789999999999988888777766555                                           


Q ss_pred             cceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCC------CCCCCC
Q 042359          792 NLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPES------MSSLTF  865 (979)
Q Consensus       792 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~------l~~l~~  865 (979)
                         +.|++++|.+++..|..+.++++|++|+|++|+|+ .+|.+|..+++|++|+|++|+|+..-+..      +..+.+
T Consensus       198 ---~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~  273 (305)
T d1xkua_         198 ---AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKAS  273 (305)
T ss_dssp             ---CEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCC
T ss_pred             ---cccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCC
Confidence               78999999999888889999999999999999998 78999999999999999999998543333      345788


Q ss_pred             CCEEEccCCccc-ccCCC
Q 042359          866 LNHLNLSNNNLT-GKIPS  882 (979)
Q Consensus       866 L~~L~ls~N~l~-g~ip~  882 (979)
                      |+.|++++|++. +++|.
T Consensus       274 L~~L~L~~N~~~~~~~~~  291 (305)
T d1xkua_         274 YSGVSLFSNPVQYWEIQP  291 (305)
T ss_dssp             CSEEECCSSSSCGGGSCG
T ss_pred             CCEEECCCCcCccCcCCH
Confidence            999999999985 55654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=1.5e-22  Score=217.37  Aligned_cols=269  Identities=21%  Similarity=0.243  Sum_probs=160.7

Q ss_pred             cccccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccc
Q 042359          114 KINPSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWL  193 (979)
Q Consensus       114 ~~~~~l~~l~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l  193 (979)
                      .+|+.+.  +.+++|+|++|+|+.+ .+..|.++++|++|++++|.+....|..|.++++|++|++++|++..++..   
T Consensus        24 ~lP~~l~--~~l~~L~Ls~N~i~~l-~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~---   97 (305)
T d1xkua_          24 KVPKDLP--PDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK---   97 (305)
T ss_dssp             SCCCSCC--TTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS---
T ss_pred             ccCCCCC--CCCCEEECcCCcCCCc-ChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccc---
Confidence            4566553  6899999999999974 245799999999999999999988888999999999999999988776642   


Q ss_pred             cCCCCCCEEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCC
Q 042359          194 SGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIP  273 (979)
Q Consensus       194 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p  273 (979)
                                                 ....++.|++..|.+..+....+.....++.++...|.....       ...+
T Consensus        98 ---------------------------~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~-------~~~~  143 (305)
T d1xkua_          98 ---------------------------MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS-------GIEN  143 (305)
T ss_dssp             ---------------------------CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG-------GBCT
T ss_pred             ---------------------------hhhhhhhhhccccchhhhhhhhhhcccccccccccccccccc-------CCCc
Confidence                                       123455555555555555555556666666666666544321       2233


Q ss_pred             ccccCCCCCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCcccccCC
Q 042359          274 RGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASL  353 (979)
Q Consensus       274 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~~l  353 (979)
                      ..+..+++|+.+++++|.+.. +|..  .+++|++|++++|...+.. +..+..++.+++|++++| .+.+..+..+..+
T Consensus       144 ~~~~~l~~L~~l~l~~n~l~~-l~~~--~~~~L~~L~l~~n~~~~~~-~~~~~~~~~l~~L~~s~n-~l~~~~~~~~~~l  218 (305)
T d1xkua_         144 GAFQGMKKLSYIRIADTNITT-IPQG--LPPSLTELHLDGNKITKVD-AASLKGLNNLAKLGLSFN-SISAVDNGSLANT  218 (305)
T ss_dssp             TGGGGCTTCCEEECCSSCCCS-CCSS--CCTTCSEEECTTSCCCEEC-TGGGTTCTTCCEEECCSS-CCCEECTTTGGGS
T ss_pred             cccccccccCccccccCCccc-cCcc--cCCccCEEECCCCcCCCCC-hhHhhccccccccccccc-ccccccccccccc
Confidence            445555666666666665542 2322  1345555555555555333 445555555555555555 4444444444444


Q ss_pred             CCCCeeeccCccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCCCCcEEeccCCcCcccCccc------c
Q 042359          354 CNLKSLNLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFKNIVTLDFANNSIVGLIPES------L  427 (979)
Q Consensus       354 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~------l  427 (979)
                      ++|++|+|++|.                             ++. +|.++..+++|++|++++|+|+......      .
T Consensus       219 ~~L~~L~L~~N~-----------------------------L~~-lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~  268 (305)
T d1xkua_         219 PHLRELHLNNNK-----------------------------LVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYN  268 (305)
T ss_dssp             TTCCEEECCSSC-----------------------------CSS-CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCC
T ss_pred             ccceeeeccccc-----------------------------ccc-cccccccccCCCEEECCCCccCccChhhccCcchh
Confidence            444444443333                             321 2345555666666666666665432222      2


Q ss_pred             cCCCCCCEEEcCCCcCc-cccChhhhcCCCC
Q 042359          428 GQLSTLRVLRINDNKLN-GTLSAIHFANLTK  457 (979)
Q Consensus       428 ~~l~~L~~L~L~~n~l~-~~l~~~~~~~l~~  457 (979)
                      ..+++|+.|+|++|++. ..+++..|..+..
T Consensus       269 ~~~~~L~~L~L~~N~~~~~~~~~~~f~~~~~  299 (305)
T d1xkua_         269 TKKASYSGVSLFSNPVQYWEIQPSTFRCVYV  299 (305)
T ss_dssp             TTSCCCSEEECCSSSSCGGGSCGGGGTTCCC
T ss_pred             cccCCCCEEECCCCcCccCcCCHhHhccccc
Confidence            34456667777777653 3455545554433

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=9.5e-24  Score=224.01  Aligned_cols=210  Identities=21%  Similarity=0.200  Sum_probs=131.3

Q ss_pred             CCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeec
Q 042359          626 NLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLIL  705 (979)
Q Consensus       626 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L  705 (979)
                      ++++|+|++|+|+...+..|.++++|++|++++|++.+..+..+.+++.++.++...+.....++...+..+++|+.|++
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l  112 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence            44555555555553333445555555555555555555555555555555555544332222333222224556666666


Q ss_pred             cCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccc
Q 042359          706 RSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMV  785 (979)
Q Consensus       706 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  785 (979)
                      ++|.+.+..+..+...++|+.+++++|++++..+..+..++.+                                     
T Consensus       113 ~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L-------------------------------------  155 (284)
T d1ozna_         113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL-------------------------------------  155 (284)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------------------------------------
T ss_pred             CCcccccccccccchhcccchhhhccccccccChhHhccccch-------------------------------------
Confidence            6666555555556666667777777777764444444444433                                     


Q ss_pred             hhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCC
Q 042359          786 DYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTF  865 (979)
Q Consensus       786 ~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~  865 (979)
                               +.|++++|++++..|..+.++++|+.+++++|++++..|..|+.+++|++||+++|++++..|..++.+++
T Consensus       156 ---------~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~  226 (284)
T d1ozna_         156 ---------THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA  226 (284)
T ss_dssp             ---------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTT
T ss_pred             ---------hhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccc
Confidence                     66777777777666777777777888888888887777777777778888888888887777777777777


Q ss_pred             CCEEEccCCcccccCC
Q 042359          866 LNHLNLSNNNLTGKIP  881 (979)
Q Consensus       866 L~~L~ls~N~l~g~ip  881 (979)
                      |++|++++|++.+..+
T Consensus       227 L~~L~l~~N~l~C~C~  242 (284)
T d1ozna_         227 LQYLRLNDNPWVCDCR  242 (284)
T ss_dssp             CCEEECCSSCEECSGG
T ss_pred             cCEEEecCCCCCCCcc
Confidence            8888888887776544

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=5.7e-23  Score=217.92  Aligned_cols=269  Identities=17%  Similarity=0.208  Sum_probs=220.6

Q ss_pred             cEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEE
Q 042359          576 VFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLH  655 (979)
Q Consensus       576 ~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  655 (979)
                      ..++.+++.++ .+|..+      .+++++|+|++|++++..+..|.++++|++|++++|++.+..+..+..++.++.+.
T Consensus        14 ~~v~c~~~~L~-~iP~~i------p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~   86 (284)
T d1ozna_          14 VTTSCPQQGLQ-AVPVGI------PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLD   86 (284)
T ss_dssp             CEEECCSSCCS-SCCTTC------CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             eEEEcCCCCCC-ccCCCC------CCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccc
Confidence            45677777766 456543      25789999999999977777899999999999999999988888888899999988


Q ss_pred             cC-CccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCcc
Q 042359          656 LG-ENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNL  734 (979)
Q Consensus       656 L~-~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l  734 (979)
                      .. .|.++...+..+.++++|++|++++|.+....+..+. ...+|+.+++++|++++..+..+..+++|+.|++++|++
T Consensus        87 ~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l  165 (284)
T d1ozna_          87 LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR-GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI  165 (284)
T ss_dssp             CCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             cccccccccccchhhcccccCCEEecCCcccccccccccc-hhcccchhhhccccccccChhHhccccchhhcccccCcc
Confidence            75 5667766788899999999999999999754444444 688999999999999987778899999999999999999


Q ss_pred             ccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccC
Q 042359          735 SGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTN  814 (979)
Q Consensus       735 ~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~  814 (979)
                      .+..|..+.+++.|                                              +.+++++|++++..|..|.+
T Consensus       166 ~~l~~~~f~~l~~L----------------------------------------------~~l~l~~N~l~~i~~~~f~~  199 (284)
T d1ozna_         166 SSVPERAFRGLHSL----------------------------------------------DRLLLHQNRVAHVHPHAFRD  199 (284)
T ss_dssp             CEECTTTTTTCTTC----------------------------------------------CEEECCSSCCCEECTTTTTT
T ss_pred             cccchhhhcccccc----------------------------------------------chhhhhhccccccChhHhhh
Confidence            97777777776665                                              78999999999999999999


Q ss_pred             CCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCCcccccCCCCccCCCcccccc
Q 042359          815 LKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNNNLTGKIPSSTQLQSFDVSSF  894 (979)
Q Consensus       815 l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~  894 (979)
                      +++|++||+++|++++..|..|+.+++|++|+|++|++.+.-+.. .-...++.+....+++.+..|.  .++..+...+
T Consensus       200 l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~-~l~~~l~~~~~~~~~~~C~~p~--~l~g~~l~~l  276 (284)
T d1ozna_         200 LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQ--RLAGRDLKRL  276 (284)
T ss_dssp             CTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESG--GGTTCBGGGS
T ss_pred             hhhcccccccccccccccccccccccccCEEEecCCCCCCCccch-HHHHHHHhCcCCCCceEeCCch--HHcCCccccC
Confidence            999999999999999888889999999999999999999764321 1123455667777888887775  3344444556


Q ss_pred             CCCCCCC
Q 042359          895 AGNDLCG  901 (979)
Q Consensus       895 ~~n~lcg  901 (979)
                      .+++++|
T Consensus       277 ~~~~l~g  283 (284)
T d1ozna_         277 AANDLQG  283 (284)
T ss_dssp             CGGGSCC
T ss_pred             CHHHCCC
Confidence            6667766

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=6.7e-22  Score=207.07  Aligned_cols=199  Identities=22%  Similarity=0.254  Sum_probs=134.5

Q ss_pred             CCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeecc
Q 042359          627 LKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILR  706 (979)
Q Consensus       627 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~  706 (979)
                      +.+++.+++.++ .+|..+.  +++++|+|++|++++..+..|.++++|++|+|++|+++ .+|.. . .+++|+.|+++
T Consensus        12 ~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~~-~-~l~~L~~L~Ls   85 (266)
T d1p9ag_          12 HLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-G-TLPVLGTLDLS   85 (266)
T ss_dssp             CCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC-S-CCTTCCEEECC
T ss_pred             CeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccccc-c-ccccccccccc
Confidence            333444444444 3443332  34555555555555444444555555555555555554 33322 1 35556666666


Q ss_pred             CCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCCCCcccceeeeeeeEEeecCccch
Q 042359          707 SNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLPLPIDVGVILVEKASVVSKGEMVD  786 (979)
Q Consensus       707 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  786 (979)
                      +|++++ .+..+..+++|+.|++++|.+.+..+..+..+..                                       
T Consensus        86 ~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~---------------------------------------  125 (266)
T d1p9ag_          86 HNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE---------------------------------------  125 (266)
T ss_dssp             SSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTT---------------------------------------
T ss_pred             cccccc-cccccccccccccccccccccceeeccccccccc---------------------------------------
Confidence            666553 3556677778888888888776544444443333                                       


Q ss_pred             hhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCC
Q 042359          787 YEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFL  866 (979)
Q Consensus       787 ~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L  866 (979)
                             ++.|++++|.+++..+..+..+++|+.|++++|++++..|..|+.+++|++|||++|+|+ .+|+.+..+++|
T Consensus       126 -------l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L  197 (266)
T d1p9ag_         126 -------LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL  197 (266)
T ss_dssp             -------CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCC
T ss_pred             -------cccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCC
Confidence                   377888888888777777788999999999999999888888999999999999999998 789888899999


Q ss_pred             CEEEccCCccccc
Q 042359          867 NHLNLSNNNLTGK  879 (979)
Q Consensus       867 ~~L~ls~N~l~g~  879 (979)
                      +.|+|++|++.+.
T Consensus       198 ~~L~L~~Np~~Cd  210 (266)
T d1p9ag_         198 PFAFLHGNPWLCN  210 (266)
T ss_dssp             SEEECCSCCBCCS
T ss_pred             CEEEecCCCCCCC
Confidence            9999999999864

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=6.7e-21  Score=199.33  Aligned_cols=201  Identities=20%  Similarity=0.181  Sum_probs=166.2

Q ss_pred             CCcccEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEe
Q 042359          600 TKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLD  679 (979)
Q Consensus       600 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  679 (979)
                      ...+.+.+.+++.++ .+|+.+.  +++++|+|++|+|++..+..|.++++|++|+|++|+++. +| .+..+++|++|+
T Consensus         9 ~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~   83 (266)
T d1p9ag_           9 VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLD   83 (266)
T ss_dssp             STTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEE
T ss_pred             cCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-cccccccccccc
Confidence            455666778888877 4676554  478889999998886666778888999999999998874 44 357888999999


Q ss_pred             ccCCcccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCccccccccccc
Q 042359          680 VGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQ  759 (979)
Q Consensus       680 L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~  759 (979)
                      +++|++++ +|..+. .+++|+.|++++|.+.+..+..+..+.+++.|++++|.+.+..+..+..++.+           
T Consensus        84 Ls~N~l~~-~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l-----------  150 (266)
T d1p9ag_          84 LSHNQLQS-LPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL-----------  150 (266)
T ss_dssp             CCSSCCSS-CCCCTT-TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-----------
T ss_pred             cccccccc-cccccc-cccccccccccccccceeeccccccccccccccccccccceeccccccccccc-----------
Confidence            99999874 455554 68899999999999988778888899999999999999986555555554444           


Q ss_pred             ccCCCCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCcc
Q 042359          760 QYLPLPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVM  839 (979)
Q Consensus       760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l  839 (979)
                                                         +.+++++|++++..+..|+.+++|++|||++|+|+ .+|+.+..+
T Consensus       151 -----------------------------------~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~  194 (266)
T d1p9ag_         151 -----------------------------------EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGS  194 (266)
T ss_dssp             -----------------------------------CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTT
T ss_pred             -----------------------------------hhcccccccccccCccccccccccceeecccCCCc-ccChhHCCC
Confidence                                               78999999999888888999999999999999999 899999999


Q ss_pred             CCCCEEECcCCcccc
Q 042359          840 RSLESIDFSANQLSG  854 (979)
Q Consensus       840 ~~L~~LdLs~N~l~~  854 (979)
                      ++|+.|+|++|.+..
T Consensus       195 ~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         195 HLLPFAFLHGNPWLC  209 (266)
T ss_dssp             CCCSEEECCSCCBCC
T ss_pred             CCCCEEEecCCCCCC
Confidence            999999999999875

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2.5e-20  Score=212.54  Aligned_cols=116  Identities=19%  Similarity=0.177  Sum_probs=55.5

Q ss_pred             CCcEEEcccccccccCChhhhhcccCCCcccEEeccCcccccc----CCcccc-CCCCCCEEEccCCccccc----CCcc
Q 042359          574 NLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGE----LPDCWM-SYQNLKTLKLSNNKFTGN----LPYS  644 (979)
Q Consensus       574 ~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~----~p~~~~-~l~~L~~L~Ls~N~l~~~----~p~~  644 (979)
                      .|+.+++++|.++......+...+...++|++|+|++|++++.    ++..+. ..+.|++|++++|.++..    ++..
T Consensus       313 ~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~  392 (460)
T d1z7xw1         313 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT  392 (460)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred             ccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHH
Confidence            3444444444444333233333333344555555555555432    122222 234566666666666532    2333


Q ss_pred             cCCCCCccEEEcCCcccccccccc----cc-CCCCCCEEeccCCcccccC
Q 042359          645 MGSLTSLVWLHLGENRLSGNILVS----LK-NCTALESLDVGENEFVGNI  689 (979)
Q Consensus       645 l~~l~~L~~L~L~~n~l~~~~p~~----l~-~l~~L~~L~L~~N~l~~~i  689 (979)
                      +..+++|++|++++|+++......    +. +...|+.|++.+|.+....
T Consensus       393 l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~  442 (460)
T d1z7xw1         393 LLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEM  442 (460)
T ss_dssp             HHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHH
T ss_pred             HhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHH
Confidence            444566666666666665432222    22 3345677777776665433

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.75  E-value=7.6e-16  Score=168.13  Aligned_cols=176  Identities=23%  Similarity=0.234  Sum_probs=88.1

Q ss_pred             CCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccccCCCCCCEEE
Q 042359          124 HLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLD  203 (979)
Q Consensus       124 ~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~  203 (979)
                      ++++|||++++++.  +|+.   +++|++|+|++|+|+ .+|..+   .+|++|++++|++..++..     .+.|++|+
T Consensus        39 ~l~~LdLs~~~L~~--lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~~l~~l-----p~~L~~L~  104 (353)
T d1jl5a_          39 QAHELELNNLGLSS--LPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLKALSDL-----PPLLEYLG  104 (353)
T ss_dssp             TCSEEECTTSCCSC--CCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCSCCCSC-----CTTCCEEE
T ss_pred             CCCEEEeCCCCCCC--CCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccchhhhh-----cccccccc
Confidence            46666777766664  4542   356667777777666 455433   4566666666665554431     13455666


Q ss_pred             ccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCccccCCCCCC
Q 042359          204 LRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLR  283 (979)
Q Consensus       204 l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l~~L~  283 (979)
                      +++|.+...+.    +..+++|++|+++++.+.....    ....+..+++..+...           .+..+..++.++
T Consensus       105 L~~n~l~~lp~----~~~l~~L~~L~l~~~~~~~~~~----~~~~l~~l~~~~~~~~-----------~~~~l~~l~~l~  165 (353)
T d1jl5a_         105 VSNNQLEKLPE----LQNSSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQLE-----------ELPELQNLPFLT  165 (353)
T ss_dssp             CCSSCCSSCCC----CTTCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCS-----------SCCCCTTCTTCC
T ss_pred             ccccccccccc----hhhhccceeecccccccccccc----ccccccchhhcccccc-----------ccccccccccce
Confidence            66665554422    2345555666655555544332    2344455555444433           123344555566


Q ss_pred             EEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCC
Q 042359          284 HLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLN  339 (979)
Q Consensus       284 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n  339 (979)
                      .+.+++|..... +.   .....+.+....+.+. .  ...+..++.|+.+++++|
T Consensus       166 ~L~l~~n~~~~~-~~---~~~~~~~l~~~~~~~~-~--~~~~~~l~~L~~l~l~~n  214 (353)
T d1jl5a_         166 AIYADNNSLKKL-PD---LPLSLESIVAGNNILE-E--LPELQNLPFLTTIYADNN  214 (353)
T ss_dssp             EEECCSSCCSSC-CC---CCTTCCEEECCSSCCS-S--CCCCTTCTTCCEEECCSS
T ss_pred             eccccccccccc-cc---cccccccccccccccc-c--cccccccccccccccccc
Confidence            666665554321 11   1122334444443332 1  123445555566665555

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.74  E-value=1.9e-15  Score=164.87  Aligned_cols=138  Identities=25%  Similarity=0.267  Sum_probs=93.2

Q ss_pred             CCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccccCCCCCCEEEccCccCCCCchhhhhcCCCCCccE
Q 042359          148 GNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVE  227 (979)
Q Consensus       148 ~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~  227 (979)
                      .++++|||+++.++ .+|+.   .++|++|++++|++.+++..     +.+|++|++++|.++.+.++      .+.|++
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~~lp~~-----~~~L~~L~l~~n~l~~l~~l------p~~L~~  102 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLTELPEL-----PQSLKSLLVDNNNLKALSDL------PPLLEY  102 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCSSCCCC-----CTTCCEEECCSSCCSCCCSC------CTTCCE
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCcccccc-----hhhhhhhhhhhcccchhhhh------cccccc
Confidence            47899999999998 57754   47899999999999888742     46788888888887765432      135777


Q ss_pred             EEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCccccCCCCCCEEeccCCcCcccCchhhccCCCCC
Q 042359          228 LRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSIPNWLYRFIHLE  307 (979)
Q Consensus       228 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  307 (979)
                      |++++|.+..++.  ++.+++|++|+++++.+..          .+.   ....+..+.+..+...  ....+..++.++
T Consensus       103 L~L~~n~l~~lp~--~~~l~~L~~L~l~~~~~~~----------~~~---~~~~l~~l~~~~~~~~--~~~~l~~l~~l~  165 (353)
T d1jl5a_         103 LGVSNNQLEKLPE--LQNSSFLKIIDVDNNSLKK----------LPD---LPPSLEFIAAGNNQLE--ELPELQNLPFLT  165 (353)
T ss_dssp             EECCSSCCSSCCC--CTTCTTCCEEECCSSCCSC----------CCC---CCTTCCEEECCSSCCS--SCCCCTTCTTCC
T ss_pred             ccccccccccccc--hhhhccceeeccccccccc----------ccc---ccccccchhhcccccc--ccccccccccce
Confidence            7777777776643  4567777777777776652          121   1345566666555442  233455666677


Q ss_pred             EEeccCCcCc
Q 042359          308 YLSLSNNSLQ  317 (979)
Q Consensus       308 ~L~L~~n~l~  317 (979)
                      .+++.+|...
T Consensus       166 ~L~l~~n~~~  175 (353)
T d1jl5a_         166 AIYADNNSLK  175 (353)
T ss_dssp             EEECCSSCCS
T ss_pred             eccccccccc
Confidence            7777666654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=1.4e-17  Score=169.35  Aligned_cols=205  Identities=21%  Similarity=0.308  Sum_probs=137.6

Q ss_pred             cEEeccCccccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCC
Q 042359          604 NALQLNDNYLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGEN  683 (979)
Q Consensus       604 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N  683 (979)
                      ..++++.+++++.+  .+..+.+|+.|++.+|.++ .++ .+..+++|++|++++|++++..|  +..+++|+++++++|
T Consensus        22 ~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~-~l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n   95 (227)
T d1h6ua2          22 IKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN   95 (227)
T ss_dssp             HHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC
T ss_pred             HHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCC-cch-hHhcCCCCcEeecCCceeecccc--ccccccccccccccc
Confidence            34455555555443  2345566777777777766 343 46667777777777777765333  667777777777777


Q ss_pred             cccccCChhHHHhhhccceeeccCCcccCCCCccccCCCCccEEEccCCccccccCcchhhcccCcccccccccccccCC
Q 042359          684 EFVGNIPTWIGERFSRMVVLILRSNKFHGPLPTGLCDLAFLQILDIADNNLSGAIPNCINNLTGMVTACSFTRSVQQYLP  763 (979)
Q Consensus       684 ~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~  763 (979)
                      .++ .++. +. .+++|+.++++++...+..  .+...+.++.+.++++.+....+  +.++                  
T Consensus        96 ~~~-~i~~-l~-~l~~L~~l~l~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~--~~~~------------------  150 (227)
T d1h6ua2          96 PLK-NVSA-IA-GLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGL------------------  150 (227)
T ss_dssp             CCS-CCGG-GT-TCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGC------------------
T ss_pred             ccc-cccc-cc-ccccccccccccccccccc--hhccccchhhhhchhhhhchhhh--hccc------------------
Confidence            665 3442 33 4677777777777665432  34556777788887777653222  2222                  


Q ss_pred             CCcccceeeeeeeEEeecCccchhhhhccceeEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCC
Q 042359          764 LPIDVGVILVEKASVVSKGEMVDYEDILNLVRMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLE  843 (979)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~  843 (979)
                                                  ..|+.|++++|.+++..  .++++++|+.|||++|++++ +|. ++++++|+
T Consensus       151 ----------------------------~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~-l~~-l~~l~~L~  198 (227)
T d1h6ua2         151 ----------------------------TNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD-ISP-LASLPNLI  198 (227)
T ss_dssp             ----------------------------TTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCC
T ss_pred             ----------------------------cccccccccccccccch--hhcccccceecccCCCccCC-Chh-hcCCCCCC
Confidence                                        23478888888887543  37889999999999999985 443 78889999


Q ss_pred             EEECcCCcccccCCCCCCCCCCCCEEEccC
Q 042359          844 SIDFSANQLSGEIPESMSSLTFLNHLNLSN  873 (979)
Q Consensus       844 ~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~  873 (979)
                      +|+|++|++++..|  ++++++|++||+++
T Consensus       199 ~L~Ls~N~lt~i~~--l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         199 EVHLKNNQISDVSP--LANTSNLFIVTLTN  226 (227)
T ss_dssp             EEECTTSCCCBCGG--GTTCTTCCEEEEEE
T ss_pred             EEECcCCcCCCCcc--cccCCCCCEEEeeC
Confidence            99999999985433  78899999999874

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.1e-19  Score=206.96  Aligned_cols=114  Identities=21%  Similarity=0.202  Sum_probs=64.1

Q ss_pred             CCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCC----CCccccCCCCCCceEecCCCccccCCcccc---c-cC
Q 042359          124 HLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGG----MIPHHLGNLSNLQFLDLSSNYLLYVDNFWW---L-SG  195 (979)
Q Consensus       124 ~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~----~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~---l-~~  195 (979)
                      +|++||++++++++..+.+.+..++++|+|+|++|.++.    .++..+..+++|++|||++|.+.+.+....   + ..
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            467777777777764444555667777777777777653    233445667777777777776643221111   1 12


Q ss_pred             CCCCCEEEccCccCCCC--chhhhhcCCCCCccEEEccCCCCCC
Q 042359          196 LSFLEHLDLRSVNLSKA--FDWLMVTNKLPSLVELRLANCQLHH  237 (979)
Q Consensus       196 l~~L~~L~l~~n~~~~~--~~~~~~~~~l~~L~~L~L~~n~l~~  237 (979)
                      ..+|++|++++|.+++.  ..+...+..+++|++|++++|.+..
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence            23566666666655433  1223344555566666666555543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=2.6e-16  Score=159.78  Aligned_cols=190  Identities=26%  Similarity=0.319  Sum_probs=112.0

Q ss_pred             cccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccccCCC
Q 042359          118 SLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLS  197 (979)
Q Consensus       118 ~l~~l~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~  197 (979)
                      .+..+.+|++|++.+|+|+.  ++ .++++++|++|++++|.+++..|  +.++++|+++++++|.+..++.   +.+++
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~--l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i~~---l~~l~  107 (227)
T d1h6ua2          36 TQADLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVSA---IAGLQ  107 (227)
T ss_dssp             CHHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCGG---GTTCT
T ss_pred             CHHHcCCcCEEECCCCCCCc--ch-hHhcCCCCcEeecCCceeecccc--cccccccccccccccccccccc---ccccc
Confidence            44567788888888888875  33 47788888888888888875433  7888888888888887766543   55667


Q ss_pred             CCCEEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCcccc
Q 042359          198 FLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQ  277 (979)
Q Consensus       198 ~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~  277 (979)
                      +|+.++++++...+..    .+...+.++.+.++.+.+....  .+..+++|+.|++++|.+..           ...++
T Consensus       108 ~L~~l~l~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~-----------~~~l~  170 (227)
T d1h6ua2         108 SIKTLDLTSTQITDVT----PLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSD-----------LTPLA  170 (227)
T ss_dssp             TCCEEECTTSCCCCCG----GGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCC-----------CGGGT
T ss_pred             cccccccccccccccc----hhccccchhhhhchhhhhchhh--hhcccccccccccccccccc-----------chhhc
Confidence            7777777766655432    2344555555655555544332  24445555555555555442           11244


Q ss_pred             CCCCCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCcccccccCccCEEecC
Q 042359          278 NLTSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLS  337 (979)
Q Consensus       278 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~  337 (979)
                      ++++|++|++++|++++. + .+.++++|++|++++|+++ .+  ..++++++|++|+++
T Consensus       171 ~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt-~i--~~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         171 NLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQIS-DV--SPLANTSNLFIVTLT  225 (227)
T ss_dssp             TCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCC-BC--GGGTTCTTCCEEEEE
T ss_pred             ccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCC-CC--cccccCCCCCEEEee
Confidence            455555555555555432 2 2445555555555555544 22  124444555555443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.1e-16  Score=162.53  Aligned_cols=78  Identities=14%  Similarity=0.056  Sum_probs=49.6

Q ss_pred             eEEecccCcccccccccccCCCCCCEE-eCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccC
Q 042359          795 RMIDISRNNFSGKIPLEVTNLKALQSL-NFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSN  873 (979)
Q Consensus       795 ~~LdLs~N~l~~~ip~~l~~l~~L~~L-~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~  873 (979)
                      +.+++++|+++. ++.......+++.+ ++++|+++...+..|.++++|++|||++|+++...+..|.+++.|+++++.+
T Consensus       156 ~~L~l~~n~l~~-i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         156 VILWLNKNGIQE-IHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             EEEECCSSCCCE-ECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             eeeecccccccc-cccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            567777777773 44444444554444 4677777743344577788888888888888754455567777666666543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.64  E-value=8.1e-17  Score=158.59  Aligned_cols=101  Identities=16%  Similarity=0.264  Sum_probs=57.7

Q ss_pred             eEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccCC
Q 042359          795 RMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSNN  874 (979)
Q Consensus       795 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N  874 (979)
                      +.|+|++|++++..|..|.++++|++|+|++|+|++..|.+|..+++|++|+|++|.+.+..+... -...++.+++..|
T Consensus        81 ~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~-~~~~l~~~~l~~~  159 (192)
T d1w8aa_          81 QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGG  159 (192)
T ss_dssp             CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHHHCCSGG
T ss_pred             ceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHH-HhhhhhhhcccCC
Confidence            556666666665555566666777777777777776666666667777777777776654322111 0122444555666


Q ss_pred             cccccCCCCccCCCccccccCCCC
Q 042359          875 NLTGKIPSSTQLQSFDVSSFAGND  898 (979)
Q Consensus       875 ~l~g~ip~~~~~~~~~~~~~~~n~  898 (979)
                      .+.+..|.  .++.....++..|.
T Consensus       160 ~~~c~~p~--~l~~~~l~~L~~n~  181 (192)
T d1w8aa_         160 AARCGAPS--KVRDVQIKDLPHSE  181 (192)
T ss_dssp             GCBBCSST--TTTTSBGGGSCTTT
T ss_pred             CeEeCCCh--hhcCCEeeecCHhh
Confidence            66665553  24444444455553

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=2.8e-15  Score=148.28  Aligned_cols=163  Identities=27%  Similarity=0.353  Sum_probs=97.4

Q ss_pred             cCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccccCCCCC
Q 042359          120 LDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFL  199 (979)
Q Consensus       120 ~~l~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L  199 (979)
                      ..+.++++|++++|.++.+   +.++.+++|++|++++|++++..|  ++++++|++|++++|.+..++.   +.++++|
T Consensus        37 ~~l~~l~~L~l~~~~i~~l---~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~~~---l~~l~~L  108 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKSI---DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP---LANLTNL  108 (199)
T ss_dssp             HHHTTCCEEECTTSCCCCC---TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG---GTTCTTC
T ss_pred             HHhcCCCEEECCCCCCCCc---cccccCCCcCcCccccccccCccc--ccCCcccccccccccccccccc---ccccccc
Confidence            4577888888888888763   247778888888888888875433  7888888888888887666553   4556666


Q ss_pred             CEEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCccccCC
Q 042359          200 EHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNL  279 (979)
Q Consensus       200 ~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l  279 (979)
                      +.|+++++......                            .+..+++|+.|++++|.+..           .+.+..+
T Consensus       109 ~~L~l~~~~~~~~~----------------------------~~~~l~~L~~L~l~~n~l~~-----------~~~l~~~  149 (199)
T d2omxa2         109 TGLTLFNNQITDID----------------------------PLKNLTNLNRLELSSNTISD-----------ISALSGL  149 (199)
T ss_dssp             SEEECCSSCCCCCG----------------------------GGTTCTTCSEEECCSSCCCC-----------CGGGTTC
T ss_pred             cccccccccccccc----------------------------ccchhhhhHHhhhhhhhhcc-----------ccccccc
Confidence            66666655554431                            23344445555555554431           1234445


Q ss_pred             CCCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCcccccccCccCEE
Q 042359          280 TSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWL  334 (979)
Q Consensus       280 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L  334 (979)
                      ++|+.|++.+|++++. + .++++++|++|++++|+++ .+  +.++.+++|++|
T Consensus       150 ~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~-~i--~~l~~L~~L~~L  199 (199)
T d2omxa2         150 TSLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNKVS-DI--SVLAKLTNLESL  199 (199)
T ss_dssp             TTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC-CC--GGGGGCTTCSEE
T ss_pred             ccccccccccccccCC-c-cccCCCCCCEEECCCCCCC-CC--ccccCCCCCCcC
Confidence            5555555555555432 1 2455555555555555554 22  234555555543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.64  E-value=5.2e-16  Score=152.73  Aligned_cols=173  Identities=20%  Similarity=0.145  Sum_probs=138.5

Q ss_pred             EEEeecccCCCCCCccCCCCcEEEcccccccccCChhhhhcccCCCcccEEeccCccccccCCccccCCCCCCEEEccCC
Q 042359          556 ILSVYSNNMSGPLPLISSNLVFLDLSNNLFSGSISPFLCYRINETKSLNALQLNDNYLNGELPDCWMSYQNLKTLKLSNN  635 (979)
Q Consensus       556 ~L~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N  635 (979)
                      .++.+++.++......++++++|+|++|+|++.++..   .+..+++|+.|++++|.+.+..+..+..+++|++|++++|
T Consensus        12 ~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~---~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          12 TVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDG---LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             EEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSC---SGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             EEEEeCCCcCccCCCCCCCCCEEEeCCCCCccccccc---ccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            4455555555443344678999999999998655432   2355899999999999999999999999999999999999


Q ss_pred             cccccCCcccCCCCCccEEEcCCccccccccccccCCCCCCEEeccCCcccccCChhHHHhhhccceeeccCCcccCCCC
Q 042359          636 KFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALESLDVGENEFVGNIPTWIGERFSRMVVLILRSNKFHGPLP  715 (979)
Q Consensus       636 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p  715 (979)
                      ++++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++|++.+..+....  ...++.+.+..+.+....|
T Consensus        89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~--~~~l~~~~l~~~~~~c~~p  166 (192)
T d1w8aa_          89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF--AEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH--HHHHHHHCCSGGGCBBCSS
T ss_pred             cccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHH--hhhhhhhcccCCCeEeCCC
Confidence            99988888899999999999999999998889999999999999999999865543332  3456777788888887777


Q ss_pred             ccccCCCCccEEEccCCcccc
Q 042359          716 TGLCDLAFLQILDIADNNLSG  736 (979)
Q Consensus       716 ~~l~~l~~L~~L~Ls~n~l~~  736 (979)
                      ..+   ..++.++++.|.+..
T Consensus       167 ~~l---~~~~l~~L~~n~l~C  184 (192)
T d1w8aa_         167 SKV---RDVQIKDLPHSEFKC  184 (192)
T ss_dssp             TTT---TTSBGGGSCTTTCCC
T ss_pred             hhh---cCCEeeecCHhhCcC
Confidence            654   456667888888763

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=5.4e-16  Score=154.94  Aligned_cols=73  Identities=19%  Similarity=0.334  Sum_probs=46.9

Q ss_pred             eEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEccC
Q 042359          795 RMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLSN  873 (979)
Q Consensus       795 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~  873 (979)
                      +.+++++|.+++  +..+..+++|+.+++++|++++ ++. ++++++|+.|||++|+++. +| .+.++++|++|+|++
T Consensus       137 ~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~~-l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         137 ESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             cccccccccccc--cccccccccccccccccccccc-ccc-ccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            555666666553  2235566777777777777774 332 6677777777777777763 44 467777777777753

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=1.8e-15  Score=151.09  Aligned_cols=165  Identities=24%  Similarity=0.318  Sum_probs=89.1

Q ss_pred             CCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccccCCCCCC
Q 042359          121 DLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLE  200 (979)
Q Consensus       121 ~l~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~  200 (979)
                      .+..|++|++++|.++..  + .+..+++|++|++++|.+++. + .++.+++|++|++++|++..++.   +.      
T Consensus        44 ~L~~L~~L~l~~~~i~~l--~-~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~~l~~---l~------  109 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSV--Q-GIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVKDLSS---LK------  109 (210)
T ss_dssp             HHHTCCEEECTTSCCCCC--T-TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCGGG---GT------
T ss_pred             HhcCccEEECcCCCCCCc--h-hHhhCCCCCEEeCCCccccCc-c-ccccCcccccccccccccccccc---cc------
Confidence            456677777777776653  2 356677777777777777643 2 25666677777776666554432   33      


Q ss_pred             EEEccCccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCccccCCC
Q 042359          201 HLDLRSVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLT  280 (979)
Q Consensus       201 ~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l~  280 (979)
                                          .+++|+.|++++|.+..+  ..+..+++++.+++++|.+++           +..+..++
T Consensus       110 --------------------~l~~L~~L~l~~~~~~~~--~~l~~l~~l~~l~~~~n~l~~-----------~~~~~~l~  156 (210)
T d1h6ta2         110 --------------------DLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD-----------ITVLSRLT  156 (210)
T ss_dssp             --------------------TCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCC-----------CGGGGGCT
T ss_pred             --------------------cccccccccccccccccc--ccccccccccccccccccccc-----------cccccccc
Confidence                                344444444444443332  134455555555555555542           12334455


Q ss_pred             CCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCcccccccCccCEEecC
Q 042359          281 SLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLS  337 (979)
Q Consensus       281 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~  337 (979)
                      +|+++++++|++++. + .+.++++|++|++++|.++ .+  ..+.++++|++|+|+
T Consensus       157 ~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~-~l--~~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         157 KLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHIS-DL--RALAGLKNLDVLELF  208 (210)
T ss_dssp             TCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC-BC--GGGTTCTTCSEEEEE
T ss_pred             ccccccccccccccc-c-cccCCCCCCEEECCCCCCC-CC--hhhcCCCCCCEEEcc
Confidence            555555555555432 2 2455555555555555554 23  235555555555553

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=6e-15  Score=145.90  Aligned_cols=179  Identities=30%  Similarity=0.396  Sum_probs=130.2

Q ss_pred             CEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccccCCCCCCEEEcc
Q 042359          126 SYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLR  205 (979)
Q Consensus       126 ~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~l~  205 (979)
                      ..+.++.+.+++. +  ....+.++++|++++|.++. + +.+..+++|++|++++|++..++.                
T Consensus        21 i~~~l~~~~~~~~-~--~~~~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~~----------------   79 (199)
T d2omxa2          21 MKTVLGKTNVTDT-V--SQTDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP----------------   79 (199)
T ss_dssp             HHHHTTCSSTTSE-E--CHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG----------------
T ss_pred             HHHHhCCCCCCCc-c--CHHHhcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCccc----------------
Confidence            3445666666652 1  23456777888888887764 2 236667777777777766554432                


Q ss_pred             CccCCCCchhhhhcCCCCCccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCccccCCCCCCEE
Q 042359          206 SVNLSKAFDWLMVTNKLPSLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHL  285 (979)
Q Consensus       206 ~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l~~L~~L  285 (979)
                                   +.++++|++|++++|.+....  .+.++++|+.|++++|....           ...+..+++|+.|
T Consensus        80 -------------l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~~~~~~-----------~~~~~~l~~L~~L  133 (199)
T d2omxa2          80 -------------LKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITD-----------IDPLKNLTNLNRL  133 (199)
T ss_dssp             -------------GTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCC-----------CGGGTTCTTCSEE
T ss_pred             -------------ccCCccccccccccccccccc--cccccccccccccccccccc-----------ccccchhhhhHHh
Confidence                         445666666666666665544  37788999999999988763           2457789999999


Q ss_pred             eccCCcCcccCchhhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCcccccCCCCCCee
Q 042359          286 GLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSL  359 (979)
Q Consensus       286 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~~l~~L~~L  359 (979)
                      ++++|++.. + +.+..+++|++|++.+|++++ +  ..++++++|++|++++| .+++ ++ .++.+++|++|
T Consensus       134 ~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~-l--~~l~~l~~L~~L~ls~N-~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         134 ELSSNTISD-I-SALSGLTSLQQLNFSSNQVTD-L--KPLANLTTLERLDISSN-KVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             ECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCC-C--GGGTTCTTCCEEECCSS-CCCC-CG-GGGGCTTCSEE
T ss_pred             hhhhhhhcc-c-ccccccccccccccccccccC-C--ccccCCCCCCEEECCCC-CCCC-Cc-cccCCCCCCcC
Confidence            999999864 3 358899999999999999984 3  45899999999999999 7875 33 57889998876

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.9e-15  Score=153.79  Aligned_cols=202  Identities=13%  Similarity=0.059  Sum_probs=118.8

Q ss_pred             CCCCEEeccCCcCcccCchhhccCCCCCEEeccCCcCccccCcccccccCccCEEecCCCCCCcccCcccccCCCCCCee
Q 042359          280 TSLRHLGLDSNHFNSSIPNWLYRFIHLEYLSLSNNSLQGTIDSEALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSL  359 (979)
Q Consensus       280 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~~l~~~~~~~l~~l~~L~~L  359 (979)
                      +++++|++++|+++...+..|.++++|++|++++|.+...+++..|.+++.++++.+..+..+....+..+..+++|+++
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            35677777777766544555666777777777777666555555666777777776654335555566666777777777


Q ss_pred             eccCccCCcccchhhhhccccccCCCcEEECcCCcCccccccccCCCC-CCcEEeccCCcCcccCcccccCCCCCCEE-E
Q 042359          360 NLRGVHLSQEISEILDIFSGCVSNGLESLDLRSDSIYGHLTDQLGQFK-NIVTLDFANNSIVGLIPESLGQLSTLRVL-R  437 (979)
Q Consensus       360 ~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L-~  437 (979)
                      ++++|.+....+..   ....... +..+...++.+....+..+..++ .++.|++++|+++...+..+ ..++++++ .
T Consensus       109 ~l~~~~l~~~~~~~---~~~~l~~-l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~-~~~~l~~~~~  183 (242)
T d1xwdc1         109 LISNTGIKHLPDVH---KIHSLQK-VLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAF-NGTQLDELNL  183 (242)
T ss_dssp             EEESCCCCSCCCCT---TTCBSSC-EEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTT-TTCCEEEEEC
T ss_pred             ccchhhhccccccc---ccccccc-cccccccccccccccccccccccccceeeecccccccccccccc-cchhhhcccc
Confidence            77777665332210   1111222 44445555555554455555543 67777777777775544433 33444444 4


Q ss_pred             cCCCcCccccChhhhcCCCCCcEEEccCCcccccccCCCCCcccccEEec
Q 042359          438 INDNKLNGTLSAIHFANLTKLSWFRVDGNKLTLGVKHDWIPPFQLVALGL  487 (979)
Q Consensus       438 L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l  487 (979)
                      +.+|+++ .++...|.++++|++|++++|+++......+....+|+.+++
T Consensus       184 l~~n~l~-~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         184 SDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             TTCTTCC-CCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             ccccccc-cccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC
Confidence            5666665 566656777777777777777776554444444444444433

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=4.9e-15  Score=155.38  Aligned_cols=182  Identities=24%  Similarity=0.282  Sum_probs=88.0

Q ss_pred             CCCceEecCCCccccCCccccccCCCCCCEEEccCccCCCCchhhhhcCCCCCccEEEccCC-CCCCCChhh-hcCCCCC
Q 042359          172 SNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLPSLVELRLANC-QLHHFSLLA-TANFSSL  249 (979)
Q Consensus       172 ~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~-l~~l~~L  249 (979)
                      .+|++||+++|.+........+.++++|++|+++++.+.+  .....+..+++|++|++++| .++...... ...+++|
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~--~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSD--PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCH--HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCc--HHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            3444444444433222212223344444444444444332  22334445556666666554 333222212 2345666


Q ss_pred             CEEECCCCC-CCCCCCCCcccccCCcccc-CCCCCCEEeccCCc--Cccc-CchhhccCCCCCEEeccCCc-CccccCcc
Q 042359          250 TVLDLSDNQ-FDKWFIPSWVFGPIPRGLQ-NLTSLRHLGLDSNH--FNSS-IPNWLYRFIHLEYLSLSNNS-LQGTIDSE  323 (979)
Q Consensus       250 ~~L~Ls~n~-l~~~~~~~~~~~~~p~~l~-~l~~L~~L~L~~n~--l~~~-~p~~l~~l~~L~~L~L~~n~-l~~~i~~~  323 (979)
                      ++|+++++. +++        ..+...+. ..++|++|+++++.  ++.. +.....++++|++|++++|. +++.. ..
T Consensus       124 ~~L~ls~c~~~~~--------~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~-~~  194 (284)
T d2astb2         124 DELNLSWCFDFTE--------KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC-FQ  194 (284)
T ss_dssp             CEEECCCCTTCCH--------HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGG-GG
T ss_pred             ccccccccccccc--------ccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchh-hh
Confidence            666666642 321        11111222 23566666666542  2221 22223456667777776653 44333 45


Q ss_pred             cccccCccCEEecCCCCCCcccCcccccCCCCCCeeeccCc
Q 042359          324 ALGNLTSISWLDLSLNMGIEGRIPRSMASLCNLKSLNLRGV  364 (979)
Q Consensus       324 ~l~~l~~L~~L~L~~n~~l~~~~~~~l~~l~~L~~L~L~~n  364 (979)
                      .+..+++|++|++++|..+++.....++++++|+.|+++++
T Consensus       195 ~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         195 EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             hhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            56666677777777654555555555666666666666655

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=4.7e-15  Score=155.55  Aligned_cols=185  Identities=21%  Similarity=0.149  Sum_probs=88.8

Q ss_pred             CCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCc-cccCCccccccCCCCC
Q 042359          121 DLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNY-LLYVDNFWWLSGLSFL  199 (979)
Q Consensus       121 ~l~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~-i~~~~~~~~l~~l~~L  199 (979)
                      ....|++||++++.++...++..+.++++|++|++++|.+++..+..++++++|++|++++|. +++........++++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            445677777777766543344556677777777777777666566666677777777777653 3222111223445666


Q ss_pred             CEEEccCccCCCCchhhhhc-CCCCCccEEEccCC--CCCCCChh-hhcCCCCCCEEECCCCC-CCCCCCCCcccccCCc
Q 042359          200 EHLDLRSVNLSKAFDWLMVT-NKLPSLVELRLANC--QLHHFSLL-ATANFSSLTVLDLSDNQ-FDKWFIPSWVFGPIPR  274 (979)
Q Consensus       200 ~~L~l~~n~~~~~~~~~~~~-~~l~~L~~L~L~~n--~l~~~~~~-~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~p~  274 (979)
                      ++|+++++...........+ ...++|+.|+++++  .++..... ....+++|++|++++|. ++         +..+.
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~it---------d~~~~  194 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK---------NDCFQ  194 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCC---------GGGGG
T ss_pred             cccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCC---------chhhh
Confidence            66666554322111111111 22345555555543  12222111 12334455555554432 22         22233


Q ss_pred             cccCCCCCCEEeccCC-cCcccCchhhccCCCCCEEeccCC
Q 042359          275 GLQNLTSLRHLGLDSN-HFNSSIPNWLYRFIHLEYLSLSNN  314 (979)
Q Consensus       275 ~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n  314 (979)
                      .+.++++|++|++++| .+++.....++++++|++|+++++
T Consensus       195 ~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         195 EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             hhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            3444444555555443 233333333444444444444444

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.43  E-value=1.6e-14  Score=156.69  Aligned_cols=86  Identities=14%  Similarity=0.297  Sum_probs=58.2

Q ss_pred             ceeEEecccCccccc----ccccccCCCCCCEEeCCCCcceeccCCCC----C--ccCCCCEEECcCCccccc----CCC
Q 042359          793 LVRMIDISRNNFSGK----IPLEVTNLKALQSLNFSYNSFTGRIPESI----G--VMRSLESIDFSANQLSGE----IPE  858 (979)
Q Consensus       793 ~L~~LdLs~N~l~~~----ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~----~--~l~~L~~LdLs~N~l~~~----ip~  858 (979)
                      .|+.|||++|.++..    +...+..+++|++|+|++|.+++.-...+    .  ....|+.||+++|+++..    +..
T Consensus       216 ~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~  295 (344)
T d2ca6a1         216 ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT  295 (344)
T ss_dssp             TCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH
T ss_pred             hhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHH
Confidence            346777777777532    44556777888888888888875422222    1  236788899999988753    333


Q ss_pred             CCC-CCCCCCEEEccCCcccc
Q 042359          859 SMS-SLTFLNHLNLSNNNLTG  878 (979)
Q Consensus       859 ~l~-~l~~L~~L~ls~N~l~g  878 (979)
                      .+. +.+.|++|++++|++..
T Consensus       296 ~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         296 VIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHccCCCCCEEECCCCcCCC
Confidence            342 46788999999998864

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.41  E-value=4.5e-13  Score=120.12  Aligned_cols=78  Identities=28%  Similarity=0.342  Sum_probs=50.5

Q ss_pred             CEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccccCCCCCCEEEcc
Q 042359          126 SYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLR  205 (979)
Q Consensus       126 ~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~l~  205 (979)
                      |+|+|++|+++.  ++ .++.+++|++|++++|.++ .+|..++.+++|++|++++|.+..++.   +..+++|++|+++
T Consensus         1 R~L~Ls~n~l~~--l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l~~---~~~l~~L~~L~l~   73 (124)
T d1dcea3           1 RVLHLAHKDLTV--LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVDG---VANLPRLQELLLC   73 (124)
T ss_dssp             SEEECTTSCCSS--CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECC
T ss_pred             CEEEcCCCCCCC--Cc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccccCc---cccccccCeEECC
Confidence            577788887774  34 3677778888888888777 456667777777777777777665543   3344444444444


Q ss_pred             CccCC
Q 042359          206 SVNLS  210 (979)
Q Consensus       206 ~n~~~  210 (979)
                      +|++.
T Consensus        74 ~N~i~   78 (124)
T d1dcea3          74 NNRLQ   78 (124)
T ss_dssp             SSCCC
T ss_pred             CCccC
Confidence            44443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.40  E-value=3.7e-13  Score=120.69  Aligned_cols=81  Identities=23%  Similarity=0.358  Sum_probs=57.8

Q ss_pred             eEEecccCcccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccC-CCCCCCCCCCCEEEccC
Q 042359          795 RMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEI-PESMSSLTFLNHLNLSN  873 (979)
Q Consensus       795 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~i-p~~l~~l~~L~~L~ls~  873 (979)
                      +.||+++|+++ .+|..++.+++|+.|++++|+++ .+| .++.+++|+.|++++|+++... +..+..+++|++|++++
T Consensus        23 ~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~   99 (124)
T d1dcea3          23 THLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG   99 (124)
T ss_dssp             CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTT
T ss_pred             CEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCC
Confidence            67777777776 56667777777777777777777 344 3777777777777777777432 24567777778888888


Q ss_pred             Ccccc
Q 042359          874 NNLTG  878 (979)
Q Consensus       874 N~l~g  878 (979)
                      |++++
T Consensus       100 N~i~~  104 (124)
T d1dcea3         100 NSLCQ  104 (124)
T ss_dssp             SGGGG
T ss_pred             CcCCc
Confidence            77764

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3.3e-13  Score=127.49  Aligned_cols=91  Identities=16%  Similarity=0.111  Sum_probs=64.1

Q ss_pred             ccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccccCC
Q 042359          117 PSLLDLKHLSYLDLSFNDFQGIQIPRFFGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGL  196 (979)
Q Consensus       117 ~~l~~l~~L~~L~Ls~n~i~~~~lp~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l  196 (979)
                      +++.+...+|+|||++|+|+.  ++..+..+++|++|||++|.|+. ++ .+..+++|++|++++|++..++.. .+..+
T Consensus        12 ~~~~n~~~lr~L~L~~n~I~~--i~~~~~~l~~L~~L~Ls~N~i~~-l~-~~~~l~~L~~L~ls~N~i~~l~~~-~~~~l   86 (162)
T d1a9na_          12 AQYTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRK-LD-GFPLLRRLKTLLVNNNRICRIGEG-LDQAL   86 (162)
T ss_dssp             CEEECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCE-EC-CCCCCSSCCEEECCSSCCCEECSC-HHHHC
T ss_pred             HhccCcCcCcEEECCCCCCCc--cCccccccccCCEEECCCCCCCc-cC-CcccCcchhhhhcccccccCCCcc-ccccc
Confidence            345677788889999988886  46666778888888888888874 43 478888888888888887766542 13445


Q ss_pred             CCCCEEEccCccCCCC
Q 042359          197 SFLEHLDLRSVNLSKA  212 (979)
Q Consensus       197 ~~L~~L~l~~n~~~~~  212 (979)
                      ++|++|++++|.+.+.
T Consensus        87 ~~L~~L~L~~N~i~~~  102 (162)
T d1a9na_          87 PDLTELILTNNSLVEL  102 (162)
T ss_dssp             TTCCEEECCSCCCCCG
T ss_pred             cccccceecccccccc
Confidence            5555555555555543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=4.1e-13  Score=126.81  Aligned_cols=129  Identities=22%  Similarity=0.223  Sum_probs=80.3

Q ss_pred             ccCCCCCCEEEcCCCCCCCCCccccCCCCCCceEecCCCccccCCccccccCCCCCCEEEccCccCCCCchhhhhcCCCC
Q 042359          144 FGSMGNLRYLNLSRTRIGGMIPHHLGNLSNLQFLDLSSNYLLYVDNFWWLSGLSFLEHLDLRSVNLSKAFDWLMVTNKLP  223 (979)
Q Consensus       144 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~  223 (979)
                      +.++.+||+|||++|+|+ .+|..+..+++|++|++++|.+..++.                             +..++
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~l~~-----------------------------~~~l~   63 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDG-----------------------------FPLLR   63 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEECC-----------------------------CCCCS
T ss_pred             ccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCccCC-----------------------------cccCc
Confidence            556778888888888887 446666777888888888887765543                             23455


Q ss_pred             CccEEEccCCCCCCCChhhhcCCCCCCEEECCCCCCCCCCCCCcccccCCccccCCCCCCEEeccCCcCcccC---chhh
Q 042359          224 SLVELRLANCQLHHFSLLATANFSSLTVLDLSDNQFDKWFIPSWVFGPIPRGLQNLTSLRHLGLDSNHFNSSI---PNWL  300 (979)
Q Consensus       224 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~---p~~l  300 (979)
                      +|++|++++|+++.+++..+..+++|++|++++|+++++       .. ...+..+++|++|++++|.++...   +..+
T Consensus        64 ~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~-------~~-l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i  135 (162)
T d1a9na_          64 RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVEL-------GD-LDPLASLKSLTYLCILRNPVTNKKHYRLYVI  135 (162)
T ss_dssp             SCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCG-------GG-GGGGGGCTTCCEEECCSSGGGGSTTHHHHHH
T ss_pred             chhhhhcccccccCCCccccccccccccceecccccccc-------cc-ccccccccccchhhcCCCccccccchHHHHH
Confidence            555666666666655555566677777777777776542       11 124556666667776666664321   1234


Q ss_pred             ccCCCCCEEe
Q 042359          301 YRFIHLEYLS  310 (979)
Q Consensus       301 ~~l~~L~~L~  310 (979)
                      ..+++|++||
T Consensus       136 ~~lp~L~~LD  145 (162)
T d1a9na_         136 YKVPQVRVLD  145 (162)
T ss_dssp             HHCTTCSEET
T ss_pred             HHCCCcCeeC
Confidence            4555555554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.37  E-value=2.3e-13  Score=147.40  Aligned_cols=45  Identities=13%  Similarity=-0.088  Sum_probs=24.2

Q ss_pred             ccccCCCCCCceEecCCCccccCCcc---ccccCCCCCCEEEccCccC
Q 042359          165 PHHLGNLSNLQFLDLSSNYLLYVDNF---WWLSGLSFLEHLDLRSVNL  209 (979)
Q Consensus       165 p~~~~~L~~L~~L~Ls~n~i~~~~~~---~~l~~l~~L~~L~l~~n~~  209 (979)
                      ...+.+...|++|+|++|.+......   ..+...++|+.++++++..
T Consensus        24 ~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~   71 (344)
T d2ca6a1          24 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFT   71 (344)
T ss_dssp             SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCT
T ss_pred             HHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcc
Confidence            34455667777777777765332211   1244455666666655543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=5.8e-11  Score=110.94  Aligned_cols=84  Identities=18%  Similarity=0.167  Sum_probs=70.2

Q ss_pred             eeEEecccCc-ccccccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCCCCCCCCCCEEEcc
Q 042359          794 VRMIDISRNN-FSGKIPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPESMSSLTFLNHLNLS  872 (979)
Q Consensus       794 L~~LdLs~N~-l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls  872 (979)
                      ++.|++++|+ ++...+..|.++++|+.|+|++|+|+...|.+|..+++|++|||++|+|+...+..+. ...|+.|+|+
T Consensus        33 l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~-~~~l~~L~L~  111 (156)
T d2ifga3          33 LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ-GLSLQELVLS  111 (156)
T ss_dssp             CSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTC-SCCCCEEECC
T ss_pred             cCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhc-cccccccccC
Confidence            3788897664 7766667899999999999999999987788899999999999999999954444454 4479999999


Q ss_pred             CCcccc
Q 042359          873 NNNLTG  878 (979)
Q Consensus       873 ~N~l~g  878 (979)
                      +|++.+
T Consensus       112 ~Np~~C  117 (156)
T d2ifga3         112 GNPLHC  117 (156)
T ss_dssp             SSCCCC
T ss_pred             CCcccC
Confidence            999974

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.14  E-value=1.2e-12  Score=128.20  Aligned_cols=74  Identities=23%  Similarity=0.324  Sum_probs=37.5

Q ss_pred             eEEecccCcccccccccccCCCCCCEEeCCCCcceeccC-CCCCccCCCCEEECcCCcccccCCCC----------CCCC
Q 042359          795 RMIDISRNNFSGKIPLEVTNLKALQSLNFSYNSFTGRIP-ESIGVMRSLESIDFSANQLSGEIPES----------MSSL  863 (979)
Q Consensus       795 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip-~~~~~l~~L~~LdLs~N~l~~~ip~~----------l~~l  863 (979)
                      +.|++++|+++. ++ .+..+++|+.|++++|+++.... ..++.+++|+.|+|++|++....+..          +..+
T Consensus        96 ~~L~l~~N~i~~-l~-~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~l  173 (198)
T d1m9la_          96 EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRL  173 (198)
T ss_dssp             CEEECSEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHC
T ss_pred             cccccccccccc-cc-cccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHC
Confidence            555555555552 22 24455555566666655552211 23455556666666666555443322          3345


Q ss_pred             CCCCEEE
Q 042359          864 TFLNHLN  870 (979)
Q Consensus       864 ~~L~~L~  870 (979)
                      ++|+.||
T Consensus       174 p~L~~LD  180 (198)
T d1m9la_         174 PNLKKLD  180 (198)
T ss_dssp             SSCCEES
T ss_pred             CCcCEeC
Confidence            5666655

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.11  E-value=3.5e-12  Score=124.87  Aligned_cols=52  Identities=19%  Similarity=0.279  Sum_probs=34.8

Q ss_pred             eEEecccCccccccc-ccccCCCCCCEEeCCCCcceeccCCC----------CCccCCCCEEE
Q 042359          795 RMIDISRNNFSGKIP-LEVTNLKALQSLNFSYNSFTGRIPES----------IGVMRSLESID  846 (979)
Q Consensus       795 ~~LdLs~N~l~~~ip-~~l~~l~~L~~L~Ls~N~l~~~ip~~----------~~~l~~L~~Ld  846 (979)
                      +.|||++|+++.... ..++.+++|+.|+|++|.+....+..          +..+++|+.||
T Consensus       118 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            667777777763221 35677788888888888877555543          45677888877

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=3.6e-09  Score=98.48  Aligned_cols=123  Identities=15%  Similarity=0.135  Sum_probs=78.4

Q ss_pred             cCCCcccEEeccCc-cccccCCccccCCCCCCEEEccCCcccccCCcccCCCCCccEEEcCCccccccccccccCCCCCC
Q 042359          598 NETKSLNALQLNDN-YLNGELPDCWMSYQNLKTLKLSNNKFTGNLPYSMGSLTSLVWLHLGENRLSGNILVSLKNCTALE  676 (979)
Q Consensus       598 ~~~~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  676 (979)
                      ..+++|++|++++| .++..-+..|.++++|+.|++++|+|+...|..|..+++|++|+|++|+++...+..+. ..+|+
T Consensus        28 ~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~-~~~l~  106 (156)
T d2ifga3          28 PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ-GLSLQ  106 (156)
T ss_dssp             CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTC-SCCCC
T ss_pred             cCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhc-ccccc
Confidence            34677778888655 46655556788888888888888888876677788888888888888888844444443 44688


Q ss_pred             EEeccCCcccccCC-hhHHHhhhccceeeccCCcccCCCCccccCCC
Q 042359          677 SLDVGENEFVGNIP-TWIGERFSRMVVLILRSNKFHGPLPTGLCDLA  722 (979)
Q Consensus       677 ~L~L~~N~l~~~ip-~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~  722 (979)
                      .|+|++|++....- .|+. .........+..++++...|..+.+++
T Consensus       107 ~L~L~~Np~~C~C~~~~l~-~~~~~~~~~~~~~~~~C~~p~~l~~~p  152 (156)
T d2ifga3         107 ELVLSGNPLHCSCALRWLQ-RWEEEGLGGVPEQKLQCHGQGPLAHMP  152 (156)
T ss_dssp             EEECCSSCCCCCGGGHHHH-HHHHTTCSSCGGGCCCCSSSSCSSCCC
T ss_pred             ccccCCCcccCCchHHHHH-HHHHhccCccCcCCcEECcChHHCcCC
Confidence            88888888753221 2222 222223333444555544554444433

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=8.5e-08  Score=89.62  Aligned_cols=20  Identities=40%  Similarity=0.512  Sum_probs=11.0

Q ss_pred             CCCCCCceEecCCCccccCC
Q 042359          169 GNLSNLQFLDLSSNYLLYVD  188 (979)
Q Consensus       169 ~~L~~L~~L~Ls~n~i~~~~  188 (979)
                      .++++|++|+|++|+|..++
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~   81 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLD   81 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCS
T ss_pred             HhCCCCCEeeCCCccccCCc
Confidence            44555556666555555443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=8e-08  Score=89.82  Aligned_cols=80  Identities=19%  Similarity=0.147  Sum_probs=47.3

Q ss_pred             ccceeEEecccCccccc--ccccccCCCCCCEEeCCCCcceeccCCCCCccCCCCEEECcCCcccccCCCC-------CC
Q 042359          791 LNLVRMIDISRNNFSGK--IPLEVTNLKALQSLNFSYNSFTGRIPESIGVMRSLESIDFSANQLSGEIPES-------MS  861 (979)
Q Consensus       791 ~~~L~~LdLs~N~l~~~--ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~-------l~  861 (979)
                      ++.|+.||||+|+++..  ++..+..+++|+.|||++|+++..-+-.+.....|+.|++++|.+++.....       +.
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~  143 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRE  143 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHT
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHH
Confidence            44557777777777643  2344566777777777777777322212223345677777777776544322       44


Q ss_pred             CCCCCCEEE
Q 042359          862 SLTFLNHLN  870 (979)
Q Consensus       862 ~l~~L~~L~  870 (979)
                      .+|+|++||
T Consensus       144 ~~P~L~~LD  152 (162)
T d1koha1         144 RFPKLLRLD  152 (162)
T ss_dssp             TSTTCCEET
T ss_pred             HCCCCCEEC
Confidence            566777665

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.46  E-value=4.5e-05  Score=70.86  Aligned_cols=40  Identities=10%  Similarity=0.063  Sum_probs=17.6

Q ss_pred             CCCCCEEeCCCC-CCCCCC---ccccccCCCCCCEEEcCCCCCC
Q 042359          122 LKHLSYLDLSFN-DFQGIQ---IPRFFGSMGNLRYLNLSRTRIG  161 (979)
Q Consensus       122 l~~L~~L~Ls~n-~i~~~~---lp~~~~~l~~L~~L~Ls~n~i~  161 (979)
                      .+.|+.|+|+++ .+....   +-..+...++|++|+|++|.+.
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~   57 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS   57 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccc
Confidence            355666666543 233210   1122344445555555555443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.43  E-value=4.7e-05  Score=70.74  Aligned_cols=43  Identities=19%  Similarity=0.190  Sum_probs=20.2

Q ss_pred             hcCCCCCccEEEccCCCCCCCCh----hhhcCCCCCCEEECCCCCCC
Q 042359          218 VTNKLPSLVELRLANCQLHHFSL----LATANFSSLTVLDLSDNQFD  260 (979)
Q Consensus       218 ~~~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~Ls~n~l~  260 (979)
                      .+...+.|++|++++|.+.....    ..+...+.|++|++++|.++
T Consensus        39 ~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~   85 (167)
T d1pgva_          39 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT   85 (167)
T ss_dssp             HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             HHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcc
Confidence            34444555555555554442211    23334455555555555554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.77  E-value=0.00022  Score=66.06  Aligned_cols=45  Identities=7%  Similarity=-0.005  Sum_probs=21.7

Q ss_pred             hhhcCCCCCccEEEccCCCCCCCCh----hhhcCCCCCCEEECCCCCCC
Q 042359          216 LMVTNKLPSLVELRLANCQLHHFSL----LATANFSSLTVLDLSDNQFD  260 (979)
Q Consensus       216 ~~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~Ls~n~l~  260 (979)
                      ...+...++|++|++++|.++....    ..+...+.++.+++++|.++
T Consensus        39 ~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          39 AEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             HHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            3344455555555555555544322    22334455555555555544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.66  E-value=0.00015  Score=67.30  Aligned_cols=113  Identities=18%  Similarity=0.167  Sum_probs=61.3

Q ss_pred             CCCcEEEccc-ccccccCChhhhhcccCCCcccEEeccCccccccC----CccccCCCCCCEEEccCCccccc----CCc
Q 042359          573 SNLVFLDLSN-NLFSGSISPFLCYRINETKSLNALQLNDNYLNGEL----PDCWMSYQNLKTLKLSNNKFTGN----LPY  643 (979)
Q Consensus       573 ~~L~~L~Ls~-n~l~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~----p~~~~~l~~L~~L~Ls~N~l~~~----~p~  643 (979)
                      ++|++|++++ +.++...-..++..+...+.|++|++++|.++...    -..+...++++.+++++|.+...    +..
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~   96 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE   96 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHH
Confidence            4667777765 34554444445555666677777777777665331    12334456677777776666422    123


Q ss_pred             ccCCCCCccEEEc--CCccccc----cccccccCCCCCCEEeccCCcc
Q 042359          644 SMGSLTSLVWLHL--GENRLSG----NILVSLKNCTALESLDVGENEF  685 (979)
Q Consensus       644 ~l~~l~~L~~L~L--~~n~l~~----~~p~~l~~l~~L~~L~L~~N~l  685 (979)
                      .+...++|+.++|  ++|.+..    .+...+..+++|+.|+++.+..
T Consensus        97 ~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          97 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            4445566665444  3444432    1233444556666666655543