Citrus Sinensis ID: 042423
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 344 | 2.2.26 [Sep-21-2011] | |||||||
| Q4R713 | 473 | Peptidyl-prolyl cis-trans | N/A | no | 0.688 | 0.501 | 0.644 | 8e-78 | |
| Q6UX04 | 472 | Peptidyl-prolyl cis-trans | yes | no | 0.688 | 0.502 | 0.644 | 1e-77 | |
| Q5R7W3 | 473 | Peptidyl-prolyl cis-trans | yes | no | 0.688 | 0.501 | 0.644 | 1e-77 | |
| P0C1J2 | 524 | Peptidyl-prolyl isomerase | N/A | no | 0.662 | 0.435 | 0.546 | 6e-73 | |
| Q3TKY6 | 469 | Peptidyl-prolyl cis-trans | yes | no | 0.688 | 0.505 | 0.640 | 2e-72 | |
| Q5XIB2 | 468 | Peptidyl-prolyl cis-trans | yes | no | 0.688 | 0.506 | 0.632 | 5e-69 | |
| Q7ZW86 | 470 | Peptidyl-prolyl cis-trans | yes | no | 0.686 | 0.502 | 0.616 | 1e-68 | |
| Q17QX9 | 473 | Peptidyl-prolyl cis-trans | yes | no | 0.688 | 0.501 | 0.640 | 2e-68 | |
| Q6GLX7 | 477 | Peptidyl-prolyl cis-trans | N/A | no | 0.686 | 0.494 | 0.628 | 4e-68 | |
| P0CP92 | 491 | Peptidyl-prolyl isomerase | yes | no | 0.680 | 0.476 | 0.506 | 3e-67 |
| >sp|Q4R713|CWC27_MACFA Peptidyl-prolyl cis-trans isomerase CWC27 homolog OS=Macaca fascicularis GN=CWC27 PE=2 SV=1 | Back alignment and function desciption |
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Score = 290 bits (743), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 158/245 (64%), Positives = 190/245 (77%), Gaps = 8/245 (3%)
Query: 1 MSSVYVLEPPTKGKVIVKTTHGPIDIELWPKEAPKAVRNFVQLCLEGYFDNTIFHRIIKG 60
MS++Y+ EPPT GKV++KTT G IDIELW KEAPKA RNF+QLCLE Y+DNTIFHR++ G
Sbjct: 1 MSNIYIQEPPTNGKVLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPG 60
Query: 61 FLVQGGDPTGTGTGGESIYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDR 120
F+VQGGDPTGTG+GGESIYG F DEFHSRLRFN RGLVA ANAGS H NGSQFF +L R
Sbjct: 61 FIVQGGDPTGTGSGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGS-HDNGSQFFFTLGR 119
Query: 121 CDWLDRKNTIFGKVTGDSIFNLLRLGEVDTDKNDRPLDPPPKLLSVEVLWNPFEDIVPRA 180
D L+ K+TIFGKVTGD+++N+LRL EVD D +RP + P K+ S EVL+NPF+DI+PR
Sbjct: 120 ADELNNKHTIFGKVTGDTVYNMLRLSEVDIDDEERPHN-PHKIKSCEVLFNPFDDIIPRE 178
Query: 181 PSRPSIQTTTEAENKDIKKKAVKKLNLLSFGEEAEEEEKEL----ASVKQKIRSSHDVL- 235
R + E E K +K K K +LLSFGEEAEEEE+E+ S+K K +SSHD+L
Sbjct: 179 IKR-PKKEKPEEEVKKLKPKGTKNFSLLSFGEEAEEEEEEVNRVSQSMKGKSKSSHDLLK 237
Query: 236 DDPRL 240
DDP L
Sbjct: 238 DDPHL 242
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PPIases accelerate the folding of proteins. Macaca fascicularis (taxid: 9541) EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8 |
| >sp|Q6UX04|CWC27_HUMAN Peptidyl-prolyl cis-trans isomerase CWC27 homolog OS=Homo sapiens GN=CWC27 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q5R7W3|CWC27_PONAB Peptidyl-prolyl cis-trans isomerase CWC27 homolog OS=Pongo abelii GN=CWC27 PE=2 SV=1 | Back alignment and function description |
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| >sp|P0C1J2|CWC27_RHIO9 Peptidyl-prolyl isomerase cwc27 OS=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) GN=cwc27 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q3TKY6|CWC27_MOUSE Peptidyl-prolyl cis-trans isomerase CWC27 homolog OS=Mus musculus GN=Cwc27 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q5XIB2|CWC27_RAT Peptidyl-prolyl cis-trans isomerase CWC27 homolog OS=Rattus norvegicus GN=Cwc27 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q7ZW86|CWC27_DANRE Peptidyl-prolyl cis-trans isomerase CWC27 homolog OS=Danio rerio GN=cwc27 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q17QX9|CWC27_BOVIN Peptidyl-prolyl cis-trans isomerase CWC27 homolog OS=Bos taurus GN=CWC27 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q6GLX7|CWC27_XENLA Peptidyl-prolyl cis-trans isomerase CWC27 homolog OS=Xenopus laevis GN=cwc27 PE=2 SV=1 | Back alignment and function description |
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| >sp|P0CP92|CWC27_CRYNJ Peptidyl-prolyl isomerase CWC27 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=CWC27 PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 344 | ||||||
| 343887273 | 516 | peptidyl-prolyl cis-trans isomerase [Cit | 0.936 | 0.624 | 0.996 | 0.0 | |
| 356563942 | 493 | PREDICTED: peptidyl-prolyl cis-trans iso | 0.930 | 0.649 | 0.744 | 1e-127 | |
| 359476250 | 498 | PREDICTED: peptidyl-prolyl cis-trans iso | 0.933 | 0.644 | 0.782 | 1e-126 | |
| 225429566 | 501 | PREDICTED: peptidyl-prolyl cis-trans iso | 0.944 | 0.648 | 0.772 | 1e-125 | |
| 255550091 | 493 | peptidyl-prolyl cis-trans isomerase, put | 0.918 | 0.640 | 0.785 | 1e-125 | |
| 449447143 | 493 | PREDICTED: peptidyl-prolyl cis-trans iso | 0.930 | 0.649 | 0.736 | 1e-124 | |
| 449530386 | 350 | PREDICTED: LOW QUALITY PROTEIN: peptidyl | 0.930 | 0.914 | 0.736 | 1e-123 | |
| 30689591 | 504 | peptidyl-prolyl cis-trans isomerase SDCC | 0.924 | 0.630 | 0.705 | 1e-121 | |
| 3688187 | 510 | putative protein [Arabidopsis thaliana] | 0.924 | 0.623 | 0.705 | 1e-121 | |
| 297802682 | 504 | peptidyl-prolyl cis-trans isomerase cycl | 0.924 | 0.630 | 0.717 | 1e-119 |
| >gi|343887273|dbj|BAK61819.1| peptidyl-prolyl cis-trans isomerase [Citrus unshiu] | Back alignment and taxonomy information |
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Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/322 (99%), Positives = 322/322 (100%)
Query: 1 MSSVYVLEPPTKGKVIVKTTHGPIDIELWPKEAPKAVRNFVQLCLEGYFDNTIFHRIIKG 60
MSSVYVLEPPTKGKVIVKTTHGPIDIELWPKEAPKAVRNFVQLCLEGYFDNTIFHRIIKG
Sbjct: 1 MSSVYVLEPPTKGKVIVKTTHGPIDIELWPKEAPKAVRNFVQLCLEGYFDNTIFHRIIKG 60
Query: 61 FLVQGGDPTGTGTGGESIYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDR 120
FLVQGGDPTGTGTGGESIYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDR
Sbjct: 61 FLVQGGDPTGTGTGGESIYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDR 120
Query: 121 CDWLDRKNTIFGKVTGDSIFNLLRLGEVDTDKNDRPLDPPPKLLSVEVLWNPFEDIVPRA 180
CDWLDRKNTIFGKVTGDSIFNLLRLGEVDTDKNDRPLDPPPKLLSVEVLWNPFEDIVPRA
Sbjct: 121 CDWLDRKNTIFGKVTGDSIFNLLRLGEVDTDKNDRPLDPPPKLLSVEVLWNPFEDIVPRA 180
Query: 181 PSRPSIQTTTEAENKDIKKKAVKKLNLLSFGEEAEEEEKELASVKQKIRSSHDVLDDPRL 240
PSRPSIQTTTEAENKDIKKKAVKKLNLLSFGEEAEEEEKELASVKQKIRSSHDVLDDPRL
Sbjct: 181 PSRPSIQTTTEAENKDIKKKAVKKLNLLSFGEEAEEEEKELASVKQKIRSSHDVLDDPRL 240
Query: 241 LKEDKGLNTSGDKTREVQLSVREALSSKREEPKKDSEAEFPNFIDHSDDDEASFDAKMRQ 300
LKEDKGLNTSGDKTREVQLSVREALSSKREEPKKDSEAEFPNFIDHSDDDEASFDAKMRQ
Sbjct: 241 LKEDKGLNTSGDKTREVQLSVREALSSKREEPKKDSEAEFPNFIDHSDDDEASFDAKMRQ 300
Query: 301 KILRRRKDLGDVPPKQKMHNGT 322
KILRRRKDLGDVPPKQKMHNG+
Sbjct: 301 KILRRRKDLGDVPPKQKMHNGS 322
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Source: Citrus unshiu Species: Citrus unshiu Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356563942|ref|XP_003550216.1| PREDICTED: peptidyl-prolyl cis-trans isomerase CWC27 homolog [Glycine max] | Back alignment and taxonomy information |
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| >gi|359476250|ref|XP_003631808.1| PREDICTED: peptidyl-prolyl cis-trans isomerase CWC27 homolog isoform 2 [Vitis vinifera] gi|296081669|emb|CBI20674.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|225429566|ref|XP_002279928.1| PREDICTED: peptidyl-prolyl cis-trans isomerase CWC27 homolog isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|255550091|ref|XP_002516096.1| peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis] gi|223544582|gb|EEF46098.1| peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|449447143|ref|XP_004141328.1| PREDICTED: peptidyl-prolyl cis-trans isomerase CWC27 homolog [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449530386|ref|XP_004172176.1| PREDICTED: LOW QUALITY PROTEIN: peptidyl-prolyl cis-trans isomerase CWC27 homolog [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|30689591|ref|NP_195032.2| peptidyl-prolyl cis-trans isomerase SDCCAG10 [Arabidopsis thaliana] gi|45680878|gb|AAS75308.1| multidomain cyclophilin type peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] gi|95147300|gb|ABF57285.1| At4g33060 [Arabidopsis thaliana] gi|332660768|gb|AEE86168.1| peptidyl-prolyl cis-trans isomerase SDCCAG10 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|3688187|emb|CAA21215.1| putative protein [Arabidopsis thaliana] gi|7270253|emb|CAB80023.1| putative protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|297802682|ref|XP_002869225.1| peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Arabidopsis lyrata subsp. lyrata] gi|297315061|gb|EFH45484.1| peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 344 | ||||||
| TAIR|locus:2123822 | 504 | AT4G33060 [Arabidopsis thalian | 0.924 | 0.630 | 0.654 | 1.1e-108 | |
| UNIPROTKB|E1BZD0 | 332 | CWC27 "Uncharacterized protein | 0.787 | 0.816 | 0.532 | 2.4e-69 | |
| UNIPROTKB|F1SKU1 | 313 | CWC27 "Uncharacterized protein | 0.834 | 0.916 | 0.496 | 6.3e-69 | |
| UNIPROTKB|E1C0I5 | 473 | CWC27 "Uncharacterized protein | 0.688 | 0.501 | 0.575 | 1.7e-68 | |
| MGI|MGI:1914535 | 469 | Cwc27 "CWC27 spliceosome-assoc | 0.793 | 0.582 | 0.517 | 2.7e-68 | |
| UNIPROTKB|F1MBE0 | 473 | CWC27 "Peptidyl-prolyl cis-tra | 0.843 | 0.613 | 0.485 | 3.5e-68 | |
| UNIPROTKB|E2R440 | 472 | CWC27 "Uncharacterized protein | 0.834 | 0.608 | 0.493 | 4.4e-68 | |
| RGD|1310697 | 468 | Cwc27 "CWC27 spliceosome-assoc | 0.688 | 0.506 | 0.559 | 1.5e-67 | |
| UNIPROTKB|Q17QX9 | 473 | CWC27 "Peptidyl-prolyl cis-tra | 0.843 | 0.613 | 0.482 | 2.4e-67 | |
| UNIPROTKB|D6REK3 | 381 | CWC27 "Peptidyl-prolyl cis-tra | 0.688 | 0.622 | 0.571 | 2.4e-67 |
| TAIR|locus:2123822 AT4G33060 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1074 (383.1 bits), Expect = 1.1e-108, P = 1.1e-108
Identities = 218/333 (65%), Positives = 256/333 (76%)
Query: 1 MSSVYVLEPPTKGKVIVKTTHGPIDIELWPKEAPKAVRNFVQLCLEGYFDNTIFHRIIKG 60
MS+VYVLEPPTKGKVIV TTHGPID+ELWPKEAPK+VRNFVQLCLEGYFDNTIFHR+I G
Sbjct: 1 MSTVYVLEPPTKGKVIVNTTHGPIDVELWPKEAPKSVRNFVQLCLEGYFDNTIFHRVIPG 60
Query: 61 FLVQXXXXXXXXXXXESIYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDR 120
FLVQ +SIYGG FADEFHSRLRF+HRG+VA ANA SP+SNGSQFF +LD+
Sbjct: 61 FLVQGGDPTGSGTGGDSIYGGVFADEFHSRLRFSHRGIVAMANASSPNSNGSQFFFTLDK 120
Query: 121 CDWLDRKNTIFGKVTGDSIFNLLRLGEVDTDKNDRPLDPPPKLLSVEVLWNPFEDIVPRA 180
CDWLD+K+TIFGKVTGDSI+NLLRLGEVDT K+DRPLDP PK+LSVEVLWNPFEDIVPR
Sbjct: 121 CDWLDKKHTIFGKVTGDSIYNLLRLGEVDTSKDDRPLDPAPKILSVEVLWNPFEDIVPRV 180
Query: 181 PSRPSIQTTTEAENKDIKKKAVKKLNLLSFGXXXXXXXXXLASVKQKIRSSHDVLDDPRL 240
++ S ++ AE K+ K VKKLNLLSFG LA VKQKI+SSHDVL+DPRL
Sbjct: 181 LAKTSEESA--AEIKEPPTKPVKKLNLLSFGEEAEEEEKELAVVKQKIKSSHDVLNDPRL 238
Query: 241 LK---EDKGLNTSGDKTREVQLSVREALSSKREEPKKDSEAEFPNFIDHSDDD-----EA 292
LK DK N S +++EV LSVREAL++K+E +KD + + +SDDD E
Sbjct: 239 LKAEASDKERNAS--ESKEV-LSVREALNAKKEAAQKDKSFSVSDTVGNSDDDDDGEDET 295
Query: 293 SFDAKMRQKILRRRKDLGDVP--PKQKMHNGTL 323
FDAKMR ++L RRK++GD P P QK + +L
Sbjct: 296 KFDAKMRNQVLSRRKEIGDTPSKPTQKKKSSSL 328
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| UNIPROTKB|E1BZD0 CWC27 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1SKU1 CWC27 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1C0I5 CWC27 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| MGI|MGI:1914535 Cwc27 "CWC27 spliceosome-associated protein homolog (S. cerevisiae)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1MBE0 CWC27 "Peptidyl-prolyl cis-trans isomerase CWC27 homolog" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2R440 CWC27 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| RGD|1310697 Cwc27 "CWC27 spliceosome-associated protein homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q17QX9 CWC27 "Peptidyl-prolyl cis-trans isomerase CWC27 homolog" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|D6REK3 CWC27 "Peptidyl-prolyl cis-trans isomerase CWC27 homolog" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 5.2.1 | 0.766 |
| 4th Layer | 5.2.1.8 | 0.824 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00032219001 | RecName- Full=Peptidyl-prolyl cis-trans isomerase; EC=5.2.1.8; (498 aa) | ||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 344 | |||
| cd01925 | 171 | cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeC | 1e-116 | |
| cd01927 | 148 | cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclo | 9e-60 | |
| cd01923 | 159 | cd01923, cyclophilin_RING, cyclophilin_RING: cyclo | 1e-59 | |
| cd00317 | 146 | cd00317, cyclophilin, cyclophilin: cyclophilin-typ | 8e-59 | |
| COG0652 | 158 | COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase | 2e-57 | |
| cd01922 | 146 | cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCY | 1e-53 | |
| cd01928 | 153 | cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3 | 5e-53 | |
| pfam00160 | 144 | pfam00160, Pro_isomerase, Cyclophilin type peptidy | 7e-53 | |
| cd01926 | 164 | cd01926, cyclophilin_ABH_like, cyclophilin_ABH_lik | 7e-37 | |
| cd01921 | 166 | cd01921, cyclophilin_RRM, cyclophilin_RRM: cycloph | 2e-34 | |
| PLN03149 | 186 | PLN03149, PLN03149, peptidyl-prolyl isomerase H (c | 6e-32 | |
| PTZ00060 | 183 | PTZ00060, PTZ00060, cyclophilin; Provisional | 8e-30 | |
| cd01920 | 155 | cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP | 9e-23 | |
| PRK10791 | 164 | PRK10791, PRK10791, peptidyl-prolyl cis-trans isom | 3e-19 | |
| PRK10903 | 190 | PRK10903, PRK10903, peptidyl-prolyl cis-trans isom | 4e-17 | |
| cd01924 | 176 | cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40 | 2e-11 | |
| pfam04921 | 233 | pfam04921, XAP5, XAP5, circadian clock regulator | 0.002 | |
| PTZ00221 | 249 | PTZ00221, PTZ00221, cyclophilin; Provisional | 0.003 |
| >gnl|CDD|238906 cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16 | Back alignment and domain information |
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Score = 332 bits (854), Expect = e-116
Identities = 127/172 (73%), Positives = 148/172 (86%), Gaps = 2/172 (1%)
Query: 8 EPPTKGKVIVKTTHGPIDIELWPKEAPKAVRNFVQLCLEGYFDNTIFHRIIKGFLVQGGD 67
EPPT GKVI+KTT G IDIELW KEAPKA RNF+QLCLEGY+DNTIFHR++ GF++QGGD
Sbjct: 1 EPPTTGKVILKTTAGDIDIELWSKEAPKACRNFIQLCLEGYYDNTIFHRVVPGFIIQGGD 60
Query: 68 PTGTGTGGESIYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRK 127
PTGTGTGGESIYG F DEFHSRLRFN RGLV ANAG SNGSQFF +LD+ D L+ K
Sbjct: 61 PTGTGTGGESIYGEPFKDEFHSRLRFNRRGLVGMANAG-DDSNGSQFFFTLDKADELNNK 119
Query: 128 NTIFGKVTGDSIFNLLRLGEVDTDKNDRPLDPPPKLLSVEVLWNPFEDIVPR 179
+T+FGKVTGD+I+NLL+L EV+TDK++RP+ PPK+ SVEVL NPF+DIVPR
Sbjct: 120 HTLFGKVTGDTIYNLLKLAEVETDKDERPVY-PPKITSVEVLENPFDDIVPR 170
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C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding. Length = 171 |
| >gnl|CDD|238908 cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain | Back alignment and domain information |
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| >gnl|CDD|238904 cd01923, cyclophilin_RING, cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain | Back alignment and domain information |
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| >gnl|CDD|238194 cd00317, cyclophilin, cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases | Back alignment and domain information |
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| >gnl|CDD|223725 COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
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| >gnl|CDD|238903 cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2 | Back alignment and domain information |
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| >gnl|CDD|238909 cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3_like | Back alignment and domain information |
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| >gnl|CDD|215759 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | Back alignment and domain information |
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| >gnl|CDD|238907 cd01926, cyclophilin_ABH_like, cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain | Back alignment and domain information |
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| >gnl|CDD|238902 cd01921, cyclophilin_RRM, cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM) | Back alignment and domain information |
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| >gnl|CDD|178694 PLN03149, PLN03149, peptidyl-prolyl isomerase H (cyclophilin H); Provisional | Back alignment and domain information |
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| >gnl|CDD|240249 PTZ00060, PTZ00060, cyclophilin; Provisional | Back alignment and domain information |
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| >gnl|CDD|238901 cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E | Back alignment and domain information |
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| >gnl|CDD|182734 PRK10791, PRK10791, peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional | Back alignment and domain information |
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| >gnl|CDD|182824 PRK10903, PRK10903, peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|238905 cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40 | Back alignment and domain information |
|---|
| >gnl|CDD|218328 pfam04921, XAP5, XAP5, circadian clock regulator | Back alignment and domain information |
|---|
| >gnl|CDD|140248 PTZ00221, PTZ00221, cyclophilin; Provisional | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 344 | |||
| KOG0885 | 439 | consensus Peptidyl-prolyl cis-trans isomerase [Pos | 100.0 | |
| cd01925 | 171 | cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: | 100.0 | |
| KOG0883 | 518 | consensus Cyclophilin type, U box-containing pepti | 100.0 | |
| KOG0881 | 164 | consensus Cyclophilin type peptidyl-prolyl cis-tra | 100.0 | |
| cd01923 | 159 | cyclophilin_RING cyclophilin_RING: cyclophilin-typ | 100.0 | |
| cd01921 | 166 | cyclophilin_RRM cyclophilin_RRM: cyclophilin-type | 100.0 | |
| cd01928 | 153 | Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Pro | 100.0 | |
| KOG0546 | 372 | consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos | 100.0 | |
| cd01927 | 148 | cyclophilin_WD40 cyclophilin_WD40: cyclophilin-typ | 100.0 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 100.0 | |
| KOG0884 | 161 | consensus Similar to cyclophilin-type peptidyl-pro | 100.0 | |
| cd01922 | 146 | cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: c | 100.0 | |
| COG0652 | 158 | PpiB Peptidyl-prolyl cis-trans isomerase (rotamase | 100.0 | |
| KOG0880 | 217 | consensus Peptidyl-prolyl cis-trans isomerase [Pos | 100.0 | |
| PRK10903 | 190 | peptidyl-prolyl cis-trans isomerase A (rotamase A) | 100.0 | |
| PTZ00221 | 249 | cyclophilin; Provisional | 100.0 | |
| PLN03149 | 186 | peptidyl-prolyl isomerase H (cyclophilin H); Provi | 100.0 | |
| KOG0879 | 177 | consensus U-snRNP-associated cyclophilin type pept | 100.0 | |
| PRK10791 | 164 | peptidyl-prolyl cis-trans isomerase B (rotamase B) | 100.0 | |
| KOG0415 | 479 | consensus Predicted peptidyl prolyl cis-trans isom | 100.0 | |
| cd01926 | 164 | cyclophilin_ABH_like cyclophilin_ABH_like: Cycloph | 100.0 | |
| cd01920 | 155 | cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyc | 100.0 | |
| PTZ00060 | 183 | cyclophilin; Provisional | 100.0 | |
| cd00317 | 146 | cyclophilin cyclophilin: cyclophilin-type peptidyl | 100.0 | |
| PF00160 | 155 | Pro_isomerase: Cyclophilin type peptidyl-prolyl ci | 100.0 | |
| cd01924 | 176 | cyclophilin_TLP40_like cyclophilin_TLP40_like: cyc | 100.0 | |
| KOG0111 | 298 | consensus Cyclophilin-type peptidyl-prolyl cis-tra | 100.0 | |
| KOG0865 | 167 | consensus Cyclophilin type peptidyl-prolyl cis-tra | 99.95 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 96.94 | |
| TIGR03268 | 503 | methan_mark_3 putative methanogenesis marker prote | 91.45 | |
| PRK00969 | 508 | hypothetical protein; Provisional | 90.89 | |
| PRK00969 | 508 | hypothetical protein; Provisional | 90.72 | |
| TIGR03268 | 503 | methan_mark_3 putative methanogenesis marker prote | 89.91 | |
| PF04921 | 239 | XAP5: XAP5, circadian clock regulator; InterPro: I | 88.49 | |
| PF15377 | 158 | DUF4604: Domain of unknown function (DUF4604) | 84.45 | |
| COG4070 | 512 | Predicted peptidyl-prolyl cis-trans isomerase (rot | 83.43 | |
| COG4070 | 512 | Predicted peptidyl-prolyl cis-trans isomerase (rot | 81.86 |
| >KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-79 Score=590.93 Aligned_cols=308 Identities=56% Similarity=0.878 Sum_probs=262.5
Q ss_pred CCCCCCCCCCCCcEEEEEecceeEEEEEcCCCChHHHHHHHHHHhcCCccCceeEEeecCcEEEccCCCCCCCCCCcccC
Q 042423 1 MSSVYVLEPPTKGKVIVKTTHGPIDIELWPKEAPKAVRNFVQLCLEGYFDNTIFHRIIKGFLVQGGDPTGTGTGGESIYG 80 (344)
Q Consensus 1 ms~~y~~ePpt~~kV~l~Ts~G~I~IEL~~d~aP~tv~NFl~Lc~~g~Ydgt~FhRVip~fiIQgGDp~g~G~gg~siyg 80 (344)
||.+|++||||+|+|+|.||.|+|.||||+++||++|+||++||..|||+|+.|||++|+|++|||||+++|+||+||||
T Consensus 1 ms~~~~~EP~ttgkvil~TT~G~I~iELW~kE~P~acrnFiqKOGegyy~nt~fhrlvp~f~~Qggdp~~~gtGgesiyg 80 (439)
T KOG0885|consen 1 MSTSYNLEPPTTGKVILKTTKGDIDIELWAKECPKACRNFIQLCLEGYYDNTEFHRLVPGFLVQGGDPTGTGTGGESIYG 80 (439)
T ss_pred CCcccccCCCccceEEEEeccCceeeeehhhhhhHHHHHHHHHHHhccccCceeeeeccchhcccCCCCCCCCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcCCCcccccCceeEEecCCCCCCCCceEEEecCCCCCCCCCCeEEEEEEcCceeeeeecccccCCCCCCCCCCC
Q 042423 81 GNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKVTGDSIFNLLRLGEVDTDKNDRPLDPP 160 (344)
Q Consensus 81 ~~f~dE~~~rlk~~~rGlVsma~~g~~~sngSQFFITL~~~p~LDgk~tVFGrVvg~gi~vL~kI~~v~td~~~rP~~~~ 160 (344)
.+|++|+|+||+|++||+|+|||.+ .+.|||||||||+++|||+++|||||+|+|+++|++.+|.+++++.++||+.|
T Consensus 81 ~~fadE~h~Rlrf~rrGlvgmana~-~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~eida~~Rp~~p- 158 (439)
T KOG0885|consen 81 RPFADEFHPRLRFNRRGLVGMANAG-NDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEVEIDADDRPVDP- 158 (439)
T ss_pred ccchhhcCcceeeeccceeeecccC-CCCCCceEEEEecCChHhcccCceeeeecchhhhhhhhhcccccccccCCCCc-
Confidence 9999999999999999999999999 79999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEEecCCCCcccCCCCCCCCCCcchhhhhhhhhhhhccCccceeccccchhhhHhHHhhcc-ccccccccCCCCc
Q 042423 161 PKLLSVEVLWNPFEDIVPRAPSRPSIQTTTEAENKDIKKKAVKKLNLLSFGEEAEEEEKELASVKQ-KIRSSHDVLDDPR 239 (344)
Q Consensus 161 i~I~~~~Vl~~PF~Di~~r~~~~~~~~~~~~~~~~~~~kk~~k~~~llsf~~e~~~~e~~~~~~~~-k~ks~hd~l~d~~ 239 (344)
++|.+|+|++|||+||+||.+.+... +.+++.++.+++.+|+++|||||||+|+++++++..++ |.||+||+++||+
T Consensus 159 ~kI~s~EV~~npFdDI~pr~~r~~~~--e~~ke~k~~k~~~~k~~~lLsfgdE~E~de~e~~~~~k~kskSshd~~dDsr 236 (439)
T KOG0885|consen 159 PKIKSVEVLINPFDDIKPRELRKESE--EKKKERKELKKKGTKNKNLLSFGDEAEEDEEEVAVVKKRKSKSSHDVTDDSR 236 (439)
T ss_pred cceeeeEeecCchhhcchhhhhcccc--hhhhhhcccccccccccceeccccccccchhhHhhhhhhhhccccccccCch
Confidence 89999999999999999997654433 23455577888999999999999999999999888776 9999999999999
Q ss_pred ccccccccCCcccchhHHHHHHHHHHhcCCCCCcccCCCCCCCCCCC--CCchHHHHHHHHHHHHHHHHhhcCCCCcccc
Q 042423 240 LLKEDKGLNTSGDKTREVQLSVREALSSKREEPKKDSEAEFPNFIDH--SDDDEASFDAKMRQKILRRRKDLGDVPPKQK 317 (344)
Q Consensus 240 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (344)
|++.+..-..++ .. ...+.|...+.... +++..-+..|- -.++-..+.++|+-+|+.++.+.++.++...
T Consensus 237 l~~~~~~~~~~~--~s----ea~~~ls~~~~dsv--e~a~s~dt~D~~~~k~ek~~kr~k~~l~~lsk~~e~~d~k~vl~ 308 (439)
T KOG0885|consen 237 LLKIPLSVSESE--KS----EALERLSDAKHDSV--EEATSKDTSDTKNNKEEKMKKRLKKTLQMLSKSQESGDNKNVLV 308 (439)
T ss_pred hhcCcccccccc--hh----hhhhhhccccccch--hhcccccchhhhccccchhhhhhHHHhHHHHhhcccccCCcccc
Confidence 999873322222 11 11222221111111 11111111121 1222478999999999999999999999888
Q ss_pred ccC
Q 042423 318 MHN 320 (344)
Q Consensus 318 ~~~ 320 (344)
+++
T Consensus 309 ~rk 311 (439)
T KOG0885|consen 309 RRK 311 (439)
T ss_pred chh
Confidence 754
|
|
| >cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16 | Back alignment and domain information |
|---|
| >KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain | Back alignment and domain information |
|---|
| >cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM) | Back alignment and domain information |
|---|
| >cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like | Back alignment and domain information |
|---|
| >KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain | Back alignment and domain information |
|---|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2 | Back alignment and domain information |
|---|
| >COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional | Back alignment and domain information |
|---|
| >PTZ00221 cyclophilin; Provisional | Back alignment and domain information |
|---|
| >PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional | Back alignment and domain information |
|---|
| >KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional | Back alignment and domain information |
|---|
| >KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain | Back alignment and domain information |
|---|
| >cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E | Back alignment and domain information |
|---|
| >PTZ00060 cyclophilin; Provisional | Back alignment and domain information |
|---|
| >cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases | Back alignment and domain information |
|---|
| >PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms | Back alignment and domain information |
|---|
| >cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40 | Back alignment and domain information |
|---|
| >KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >TIGR03268 methan_mark_3 putative methanogenesis marker protein 3 | Back alignment and domain information |
|---|
| >PRK00969 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK00969 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >TIGR03268 methan_mark_3 putative methanogenesis marker protein 3 | Back alignment and domain information |
|---|
| >PF04921 XAP5: XAP5, circadian clock regulator; InterPro: IPR007005 These proteins are found in a wide range of eukaryotes | Back alignment and domain information |
|---|
| >PF15377 DUF4604: Domain of unknown function (DUF4604) | Back alignment and domain information |
|---|
| >COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 344 | ||||
| 2hq6_A | 185 | Structure Of The Cyclophilin_cecyp16-like Domain Of | 4e-59 | ||
| 3bkp_A | 232 | Crystal Structure Of The Toxoplasma Gondii Cyclophi | 1e-43 | ||
| 2k7n_A | 203 | Solution Structure Of The Ppil1 Bound To A Fragment | 3e-30 | ||
| 1xwn_A | 174 | Solution Structure Of Cyclophilin Like 1(Ppil1) And | 3e-30 | ||
| 2x7k_A | 166 | The Crystal Structure Of Ppil1 In Complex With Cycl | 3e-30 | ||
| 2fu0_A | 160 | Plasmodium Falciparum Cyclophilin Pfe0505w Putative | 2e-27 | ||
| 2a2n_A | 176 | Crystal Structure Of The Peptidylprolyl Isomerase D | 3e-26 | ||
| 1zkc_A | 197 | Crystal Structure Of The Cyclophiln_ring Domain Of | 9e-26 | ||
| 2poe_A | 185 | Crystal Structure Of Cryptosporidium Parvum Cycloph | 2e-23 | ||
| 2oju_A | 167 | X-Ray Structure Of Complex Of Human Cyclophilin J W | 2e-22 | ||
| 1xyh_A | 161 | Crystal Structure Of Recombinant Human Cyclophilin | 2e-22 | ||
| 2b71_A | 196 | Plasmodium Yoelii Cyclophilin-Like Protein Length = | 4e-21 | ||
| 1w74_A | 191 | X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomer | 7e-21 | ||
| 3bo7_A | 201 | Crystal Structure Of Toxoplasma Gondii Peptidyl-Pro | 7e-20 | ||
| 2haq_A | 172 | Crystal Structure Of Cyclophilin A From Leishmania | 6e-19 | ||
| 1qoi_A | 177 | U4U6 SNRNP-Specific Cyclophilin Snucyp-20 Length = | 6e-19 | ||
| 3bt8_A | 172 | Crystal Structure Of Mutant Cyclophilin (R147a) Fro | 1e-18 | ||
| 2rmc_A | 182 | Crystal Structure Of Murine Cyclophilin C Complexed | 9e-18 | ||
| 2esl_A | 190 | Human Cyclophilin C In Complex With Cyclosporin A L | 1e-17 | ||
| 2c3b_A | 172 | The Crystal Structure Of Aspergillus Fumigatus Cycl | 2e-17 | ||
| 1z81_A | 229 | Crystal Structure Of Cyclophilin From Plasmodium Yo | 2e-17 | ||
| 3k2c_A | 193 | Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isom | 1e-15 | ||
| 3ich_A | 188 | Crystal Structure Of Cyclophilin B At 1.2 A Resolut | 3e-15 | ||
| 4frv_A | 185 | Crystal Structure Of Mutated Cyclophilin B That Cau | 4e-15 | ||
| 1qng_A | 170 | Plasmodium Falciparum Cyclophilin Complexed With Cy | 4e-15 | ||
| 4fru_A | 185 | Crystal Structure Of Horse Wild-Type Cyclophilin B | 4e-15 | ||
| 1cyn_A | 178 | Cyclophilin B Complexed With [d-(Cholinylester)ser8 | 4e-15 | ||
| 2ck1_A | 172 | The Structure Of Oxidised Cyclophilin A From S. Man | 1e-14 | ||
| 2cfe_A | 162 | The 1.5 A Crystal Structure Of The Malassezia Sympo | 1e-14 | ||
| 2hqj_A | 183 | Cyclophilin From Leishmania Major Length = 183 | 2e-14 | ||
| 1xo7_A | 166 | Crystal Structure Of Cyclophilin From Trypanosoma C | 2e-14 | ||
| 1qnh_A | 170 | Plasmodium Falciparum Cyclophilin (Double Mutant) C | 2e-14 | ||
| 2r99_A | 173 | Crystal Structure Of Cyclophilin Abh-Like Domain Of | 4e-14 | ||
| 1zmf_A | 165 | C Domain Of Human Cyclophilin-33(Hcyp33) Length = 1 | 6e-14 | ||
| 2rma_A | 165 | Crystal Structures Of Cyclophilin A Complexed With | 6e-14 | ||
| 4dgd_A | 165 | Trimcyp Cyclophilin Domain From Macaca Mulatta: H70 | 6e-14 | ||
| 2wlw_A | 165 | Structure Of The N-Terminal Capsid Domain Of Hiv-2 | 7e-14 | ||
| 2xgy_B | 173 | Complex Of Rabbit Endogenous Lentivirus (Relik)caps | 7e-14 | ||
| 1m9e_A | 164 | X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N- | 7e-14 | ||
| 1bck_A | 165 | Human Cyclophilin A Complexed With 2-Thr Cyclospori | 7e-14 | ||
| 5cyh_A | 164 | Cyclophilin A Complexed With Dipeptide Gly-Pro Leng | 7e-14 | ||
| 2x83_B | 163 | Evolutionary Basis Of Hiv Restriction By The Antire | 7e-14 | ||
| 3rdd_A | 184 | Human Cyclophilin A Complexed With An Inhibitor Len | 7e-14 | ||
| 3k0o_A | 165 | Room Temperature Structure Of Cypa Mutant Ser99thr | 9e-14 | ||
| 1lop_A | 164 | Cyclophilin A Complexed With Succinyl-Ala-Pro-Ala-P | 1e-13 | ||
| 1ist_A | 162 | Crystal Structure Of Yeast Cyclophilin A, Cpr1 Leng | 1e-13 | ||
| 2nul_A | 164 | Peptidylprolyl Isomerase From E. Coli Length = 164 | 1e-13 | ||
| 1h0p_A | 182 | Cyclophilin_5 From C. Elegans Length = 182 | 1e-13 | ||
| 3k0r_A | 165 | Cryogenic Structure Of Cypa Mutant Arg55lys Length | 2e-13 | ||
| 2plu_A | 186 | Crystal Structure Of Cryptosporidium Parvum Cycloph | 2e-13 | ||
| 2x2c_K | 165 | Acetyl-Cypa:cyclosporine Complex Length = 165 | 3e-13 | ||
| 1aws_A | 164 | Secypa Complexed With Hagpia (Pseudo-Symmetric Mono | 3e-13 | ||
| 3uch_A | 174 | Crystal Structure Of A Hypotherical Peptidyl-Prolyl | 3e-13 | ||
| 3r49_A | 166 | Human Cyclophilin D Complexed With Quinolin-8-Amine | 4e-13 | ||
| 2bit_X | 165 | Crystal Structure Of Human Cyclophilin D At 1.7 A R | 4e-13 | ||
| 2z6w_A | 165 | Crystal Structure Of Human Cyclophilin D In Complex | 4e-13 | ||
| 3qyu_A | 164 | Crystal Structure Of Human Cyclophilin D At 1.54 A | 5e-13 | ||
| 2alf_A | 164 | Crystal Structure Of Human Cypa Mutant K131a Length | 5e-13 | ||
| 2x2a_A | 165 | Free Acetyl-Cypa Trigonal Form Length = 165 | 5e-13 | ||
| 3pmp_A | 164 | Crystal Structure Of Cyclophilin A From Moniliophth | 5e-13 | ||
| 3o7t_A | 164 | Crystal Structure Of Cyclophilin A From Moniliophth | 5e-13 | ||
| 2x25_B | 169 | Free Acetyl-Cypa Orthorhombic Form Length = 169 | 8e-13 | ||
| 1dyw_A | 173 | Biochemical And Structural Characterization Of A Di | 1e-12 | ||
| 1ihg_A | 370 | Bovine Cyclophilin 40, Monoclinic Form Length = 370 | 1e-12 | ||
| 1c5f_A | 177 | Crystal Structure Of The Cyclophilin-Like Domain Fr | 3e-12 | ||
| 1j2a_A | 166 | Structure Of E. Coli Cyclophilin B K163t Mutant Len | 5e-12 | ||
| 1clh_A | 166 | Three-Dimensional Solution Structure Of Escherichia | 5e-12 | ||
| 3s6m_A | 167 | The Structure Of A Peptidyl-Prolyl Cis-Trans Isomer | 6e-12 | ||
| 4i9y_A | 167 | Structure Of The C-terminal Domain Of Nup358 Length | 2e-10 | ||
| 3t1u_A | 163 | Crystal Structure Of The Complex Of Cyclophilin-a E | 3e-10 | ||
| 2he9_A | 192 | Structure Of The Peptidylprolyl Isomerase Domain Of | 6e-10 | ||
| 2wfj_A | 179 | Atomic Resolution Crystal Structure Of The Ppiase D | 2e-09 | ||
| 2wfi_A | 179 | Atomic Resolution Crystal Structure Of The Ppiase D | 2e-09 | ||
| 2gw2_A | 198 | Crystal Structure Of The Peptidyl-Prolyl Isomerase | 2e-09 |
| >pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The Serologically Defined Colon Cancer Antigen 10 From Homo Sapiens Length = 185 | Back alignment and structure |
|
| >pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin, 49.m03261 Length = 232 | Back alignment and structure |
| >pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of Skip Length = 203 | Back alignment and structure |
| >pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And Insights Into Its Interaction With Skip Length = 174 | Back alignment and structure |
| >pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With Cyclosporine A Suggests A Binding Mode For Skip Length = 166 | Back alignment and structure |
| >pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative Cyclosporin- Binding Domain Length = 160 | Back alignment and structure |
| >pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain Of Human Ppwd1 Length = 176 | Back alignment and structure |
| >pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B Length = 197 | Back alignment and structure |
| >pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660 Length = 185 | Back alignment and structure |
| >pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With Cyclosporin A Length = 167 | Back alignment and structure |
| >pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J Length = 161 | Back alignment and structure |
| >pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein Length = 196 | Back alignment and structure |
| >pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A, Ppia, Rv0009, From Mycobacterium Tuberculosis. Length = 191 | Back alignment and structure |
| >pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl Cis-Trans Isomerase, 541.M00136 Length = 201 | Back alignment and structure |
| >pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania Donovani Length = 172 | Back alignment and structure |
| >pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20 Length = 177 | Back alignment and structure |
| >pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From Leishmania Donovani Length = 172 | Back alignment and structure |
| >pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With Immunosuppressive Drug Cyclosporin A Length = 182 | Back alignment and structure |
| >pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A Length = 190 | Back alignment and structure |
| >pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin Reveals 3d Domain Swapping Of A Central Element Length = 172 | Back alignment and structure |
| >pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii Length = 229 | Back alignment and structure |
| >pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase From Encephalitozoon Cuniculi At 1.9 A Resolution Length = 193 | Back alignment and structure |
| >pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution Length = 188 | Back alignment and structure |
| >pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes Hyperelastosis Cutis In The American Quarter Horse Length = 185 | Back alignment and structure |
| >pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With Cyclosporin A Length = 170 | Back alignment and structure |
| >pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B Length = 185 | Back alignment and structure |
| >pdb|1CYN|A Chain A, Cyclophilin B Complexed With [d-(Cholinylester)ser8]-Cyclosporin Length = 178 | Back alignment and structure |
| >pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni Length = 172 | Back alignment and structure |
| >pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis Mala S 6 Allergen, A Member Of The Cyclophilin Pan- Allergen Family Length = 162 | Back alignment and structure |
| >pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major Length = 183 | Back alignment and structure |
| >pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi Length = 166 | Back alignment and structure |
| >pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant) Complexed With Cyclosporin A Length = 170 | Back alignment and structure |
| >pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human Peptidylprolyl Isomerase E Isoform 1 Length = 173 | Back alignment and structure |
| >pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33) Length = 165 | Back alignment and structure |
| >pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With Cyclosporin A And N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine Cyclosporin A Length = 165 | Back alignment and structure |
| >pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c Mutant Length = 165 | Back alignment and structure |
| >pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2 Length = 165 | Back alignment and structure |
| >pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With Cyclophilin A Length = 173 | Back alignment and structure |
| >pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N- Terminal Domain (1-146) M-Type H87a Complex. Length = 164 | Back alignment and structure |
| >pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin Length = 165 | Back alignment and structure |
| >pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro Length = 164 | Back alignment and structure |
| >pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The Antiretroviral Trimcyp Length = 163 | Back alignment and structure |
| >pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor Length = 184 | Back alignment and structure |
| >pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr Length = 165 | Back alignment and structure |
| >pdb|1LOP|A Chain A, Cyclophilin A Complexed With Succinyl-Ala-Pro-Ala-P-Nitroanilide Length = 164 | Back alignment and structure |
| >pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1 Length = 162 | Back alignment and structure |
| >pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli Length = 164 | Back alignment and structure |
| >pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans Length = 182 | Back alignment and structure |
| >pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys Length = 165 | Back alignment and structure |
| >pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120 Length = 186 | Back alignment and structure |
| >pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex Length = 165 | Back alignment and structure |
| >pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer) Length = 164 | Back alignment and structure |
| >pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A Resolution Length = 174 | Back alignment and structure |
| >pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine Length = 166 | Back alignment and structure |
| >pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A Resolution Length = 165 | Back alignment and structure |
| >pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With Cyclosporin A Length = 165 | Back alignment and structure |
| >pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A Resolution At Room Temperature Length = 164 | Back alignment and structure |
| >pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a Length = 164 | Back alignment and structure |
| >pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form Length = 165 | Back alignment and structure |
| >pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora Perniciosa In Complex With Cyclosporin A Length = 164 | Back alignment and structure |
| >pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora Perniciosa Length = 164 | Back alignment and structure |
| >pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form Length = 169 | Back alignment and structure |
| >pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent Loop Cyclophilin From Caenorhabditis Elegans Length = 173 | Back alignment and structure |
| >pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370 | Back alignment and structure |
| >pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From Brugia Malayi Complexed With Cyclosporin A Length = 177 | Back alignment and structure |
| >pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Length = 166 | Back alignment and structure |
| >pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli Periplasmic Cyclophilin Length = 166 | Back alignment and structure |
| >pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Length = 167 | Back alignment and structure |
| >pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358 Length = 167 | Back alignment and structure |
| >pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme From Azotobacter Vinelandii With Sucafpfpna Peptide Length = 163 | Back alignment and structure |
| >pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The Human Nk-Tumour Recognition Protein Length = 192 | Back alignment and structure |
| >pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain Of Human Cyclophilin G In Complex With Cyclosporin A Length = 179 | Back alignment and structure |
| >pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain Of Human Cyclophilin G Length = 179 | Back alignment and structure |
| >pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain Of Human Cyclophilin G Length = 198 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens} Length = 185 | Back alignment and structure |
|---|
Score = 305 bits (783), Expect = e-105
Identities = 119/168 (70%), Positives = 140/168 (83%), Gaps = 2/168 (1%)
Query: 8 EPPTKGKVIVKTTHGPIDIELWPKEAPKAVRNFVQLCLEGYFDNTIFHRIIKGFLVQGGD 67
EPPT GKV++KTT G IDIELW KEAPKA RNF+QLCLE Y+DNTIFHR++ GF+VQGGD
Sbjct: 20 EPPTNGKVLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGD 79
Query: 68 PTGTGTGGESIYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRK 127
PTGTG+GGESIYG F DEFHSRLRFN RGLVA ANAG H NGSQFF +L R D L+ K
Sbjct: 80 PTGTGSGGESIYGAPFKDEFHSRLRFNRRGLVAMANAG-SHDNGSQFFFTLGRADELNNK 138
Query: 128 NTIFGKVTGDSIFNLLRLGEVDTDKNDRPLDPPPKLLSVEVLWNPFED 175
+TIFGKVTGD+++N+LRL EVD D ++RP + P K+ S EVL+NPF+D
Sbjct: 139 HTIFGKVTGDTVYNMLRLSEVDIDDDERPHN-PHKIKSCEVLFNPFDD 185
|
| >3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 232 | Back alignment and structure |
|---|
| >1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 197 | Back alignment and structure |
|---|
| >2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A Length = 185 | Back alignment and structure |
|---|
| >3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii} Length = 201 | Back alignment and structure |
|---|
| >2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1 Length = 196 | Back alignment and structure |
|---|
| >2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A* Length = 161 | Back alignment and structure |
|---|
| >2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A Length = 166 | Back alignment and structure |
|---|
| >2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1 Length = 160 | Back alignment and structure |
|---|
| >2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens} Length = 203 | Back alignment and structure |
|---|
| >2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 176 | Back alignment and structure |
|---|
| >1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1 Length = 191 | Back alignment and structure |
|---|
| >3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} PDB: 3t1u_A* Length = 167 | Back alignment and structure |
|---|
| >1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A Length = 166 | Back alignment and structure |
|---|
| >1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A Length = 164 | Back alignment and structure |
|---|
| >1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A* Length = 177 | Back alignment and structure |
|---|
| >2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A Length = 179 | Back alignment and structure |
|---|
| >2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens} Length = 192 | Back alignment and structure |
|---|
| >1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A Length = 177 | Back alignment and structure |
|---|
| >1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1 Length = 229 | Back alignment and structure |
|---|
| >2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A Length = 172 | Back alignment and structure |
|---|
| >3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A* Length = 188 | Back alignment and structure |
|---|
| >2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1 Length = 172 | Back alignment and structure |
|---|
| >2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A Length = 173 | Back alignment and structure |
|---|
| >2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A Length = 172 | Back alignment and structure |
|---|
| >2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ... Length = 165 | Back alignment and structure |
|---|
| >2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A Length = 173 | Back alignment and structure |
|---|
| >3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi} Length = 193 | Back alignment and structure |
|---|
| >3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} PDB: 3o7t_A Length = 164 | Back alignment and structure |
|---|
| >2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A* Length = 186 | Back alignment and structure |
|---|
| >1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A* Length = 170 | Back alignment and structure |
|---|
| >3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens} Length = 184 | Back alignment and structure |
|---|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370 | Back alignment and structure |
|---|
| >2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus} Length = 234 | Back alignment and structure |
|---|
| >3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana} Length = 369 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 344 | |||
| 3bkp_A | 232 | Cyclophilin; malaria, isomerase, structural GENO s | 100.0 | |
| 2hq6_A | 185 | Serologically defined colon cancer antigen 10; pro | 100.0 | |
| 3bo7_A | 201 | Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; | 100.0 | |
| 1zkc_A | 197 | Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr | 100.0 | |
| 2ok3_A | 161 | Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b | 100.0 | |
| 2poe_A | 185 | Cyclophilin-like protein, putative; cryptosporidiu | 100.0 | |
| 2b71_A | 196 | Cyclophilin-like protein; structural genomics, str | 100.0 | |
| 2fu0_A | 160 | Cyclophilin, putative; PFE0505W, cyclosporin-bindi | 100.0 | |
| 2x7k_A | 166 | Peptidyl-prolyl CIS-trans isomerase-like 1; isomer | 100.0 | |
| 2a2n_A | 176 | Peptidylprolyl isomerase domain and WD repeat CON; | 100.0 | |
| 2k7n_A | 203 | Peptidyl-prolyl CIS-trans isomerase-like 1; beta b | 100.0 | |
| 3ich_A | 188 | Peptidyl-prolyl CIS-trans isomerase B; beta sandwi | 100.0 | |
| 1w74_A | 191 | Peptidyl-prolyl CIS-trans isomerase A; cyclophilin | 100.0 | |
| 1mzw_A | 177 | Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc | 100.0 | |
| 4fru_A | 185 | Cyclophilin B, peptidyl-prolyl CIS-trans isomerase | 100.0 | |
| 2haq_A | 172 | Cyclophilin; rotamase, proline, isomerase, CIS-tra | 100.0 | |
| 1a58_A | 177 | Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala | 100.0 | |
| 2cmt_A | 172 | Peptidyl-prolyl CIS-trans isomerase E; rotamase ac | 100.0 | |
| 2wfi_A | 179 | Peptidyl-prolyl CIS-trans isomerase G; phosphoprot | 100.0 | |
| 1qng_A | 170 | Peptidyl-prolyl CIS-trans isomerase; isomerase-imm | 100.0 | |
| 2igv_A | 173 | Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1 | 100.0 | |
| 1lop_A | 164 | Cyclophilin A; rotamase, isomerase-isomerase inhib | 100.0 | |
| 2r99_A | 173 | Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i | 100.0 | |
| 2he9_A | 192 | NK-tumor recognition protein; cyclosporin, isomera | 100.0 | |
| 3s6m_A | 167 | Peptidyl-prolyl CIS-trans isomerase; seattle struc | 100.0 | |
| 2z6w_A | 165 | Peptidyl-prolyl CIS-trans isomerase; isomerase-imm | 100.0 | |
| 1v9t_A | 166 | Cyclophilin B; beta barrel, isomerase-isomerase in | 100.0 | |
| 3pmp_A | 164 | Cyclophilin A; peptidyl prolyl isomerase, isomeras | 100.0 | |
| 2ose_A | 234 | Probable peptidyl-prolyl CIS-trans isomerase; cycl | 100.0 | |
| 1z81_A | 229 | Cyclophilin; structural genomics, structural genom | 100.0 | |
| 2c3b_A | 172 | Ppiase, cyclophilin; isomerase, 3D domain swapping | 100.0 | |
| 3rdd_A | 184 | Peptidyl-prolyl CIS-trans isomerase A; beta barrel | 100.0 | |
| 2poy_A | 186 | Peptidyl-prolyl CIS-trans isomerase; isomerase-imm | 100.0 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 100.0 | |
| 3k2c_A | 193 | Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, | 100.0 | |
| 3rfy_A | 369 | Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; | 100.0 | |
| 2nnz_A | 153 | Hypothetical protein; beta-barrel, structural geno | 83.8 |
| >3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-55 Score=407.20 Aligned_cols=181 Identities=53% Similarity=0.988 Sum_probs=170.4
Q ss_pred CCCCCCCCCCCcEEEEEecceeEEEEEcCCCChHHHHHHHHHHhcCCccCceeEEeecCcEEEccCCCCCCCCCCccc--
Q 042423 2 SSVYVLEPPTKGKVIVKTTHGPIDIELWPKEAPKAVRNFVQLCLEGYFDNTIFHRIIKGFLVQGGDPTGTGTGGESIY-- 79 (344)
Q Consensus 2 s~~y~~ePpt~~kV~l~Ts~G~I~IEL~~d~aP~tv~NFl~Lc~~g~Ydgt~FhRVip~fiIQgGDp~g~G~gg~siy-- 79 (344)
|++|..+||.+++|+|+|++|+|+|+||++.||+||+||++||+.|||+|+.||||+++||||||||+++|+||.++|
T Consensus 11 ~~~~~~~p~~~~~V~l~T~~G~I~ieL~~d~aP~tv~NF~~L~~~g~Ydgt~FhRVi~~FmiQgGdp~~~G~Gg~si~~~ 90 (232)
T 3bkp_A 11 RENLYFQGSTRGKVVLHTSLGDLDVELWARECPLACRNFVQLCLEGYYVNTIFHRVVKDFIVQGGDPTGTGRGGADTTFD 90 (232)
T ss_dssp -CGGGCCCSCBCEEEEEETTEEEEEEEBTTTCHHHHHHHHHHHHHTTTTTCBEEEEETTTEEEECCTTSSSSCCCCCTTT
T ss_pred cccccccCCCCCEEEEEECCCcEEEEEcCCCCcHHHHHHHHHhhcCccCCCEEEEEeCCCEEEcCCCCCCCCCCCccccC
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcCCCcccccCceeEEecCCCC-------------CCCCceEEEecCCCCCCCCCCeEEEEEEcCceeeeeecc
Q 042423 80 GGNFADEFHSRLRFNHRGLVACANAGSP-------------HSNGSQFFISLDRCDWLDRKNTIFGKVTGDSIFNLLRLG 146 (344)
Q Consensus 80 g~~f~dE~~~rlk~~~rGlVsma~~g~~-------------~sngSQFFITL~~~p~LDgk~tVFGrVvg~gi~vL~kI~ 146 (344)
|.+|++|+++.++|+.+|+||||+.+.+ ++|+|||||||+++||||++|||||+|+|+++++|++|+
T Consensus 91 g~~f~dE~~~~l~h~~~G~lsMA~~g~~~~~~~n~e~g~~~~sngSQFFIt~~~~p~LDg~~tVFG~Vvg~~v~~v~kI~ 170 (232)
T 3bkp_A 91 GKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLARADVLNNAYTLFGKVTGHTLYNLMKFN 170 (232)
T ss_dssp TCCBCCCCCTTCCCCSTTEEEECCCC----------------CBCSCEEEESSCCGGGTTTSCEEEEECGGGHHHHHHHT
T ss_pred CCccCCccccCcCcCCCeEEEEeccCCcccccccccccccCCCcCCEEEEECCCCcccCCCccEEEEEEeCchHHHHHHH
Confidence 9999999998999999999999999843 799999999999999999999999999976777789999
Q ss_pred cccCCCCCCCCCCCcEEEEEEEecCCCCcccCCCCCC
Q 042423 147 EVDTDKNDRPLDPPPKLLSVEVLWNPFEDIVPRAPSR 183 (344)
Q Consensus 147 ~v~td~~~rP~~~~i~I~~~~Vl~~PF~Di~~r~~~~ 183 (344)
.++++.+++|+.+ |+|.+|+|+.|||+|+++|....
T Consensus 171 ~~~t~~~~~P~~~-i~I~~~~vl~dPf~d~~~~~~~~ 206 (232)
T 3bkp_A 171 DLEVGKEDRPMTP-PFIKSVDVLWNPFEDLVPRRLPD 206 (232)
T ss_dssp TSCBCGGGCBSSC-CBEEEEEEEECCCTTCCCSSCCC
T ss_pred cCCcCCCCCcCCC-eEEEEEEEEcCChhhhhhccccc
Confidence 9999999999999 99999999999999999996443
|
| >2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
| >3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii} | Back alignment and structure |
|---|
| >1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1 | Back alignment and structure |
|---|
| >2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A* | Back alignment and structure |
|---|
| >2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A | Back alignment and structure |
|---|
| >2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1 | Back alignment and structure |
|---|
| >2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1 | Back alignment and structure |
|---|
| >2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A | Back alignment and structure |
|---|
| >2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1 | Back alignment and structure |
|---|
| >2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A* | Back alignment and structure |
|---|
| >1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1 | Back alignment and structure |
|---|
| >1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A | Back alignment and structure |
|---|
| >4fru_A Cyclophilin B, peptidyl-prolyl CIS-trans isomerase; cyclophilin-type ppiase, peptidyl-prolyl CIS-trans isomerase chaperone, foldase; HET: ME2 PEG; 1.10A {Equus caballus} PDB: 4frv_A* 3ich_A 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A* | Back alignment and structure |
|---|
| >2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A | Back alignment and structure |
|---|
| >1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A* | Back alignment and structure |
|---|
| >2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A | Back alignment and structure |
|---|
| >2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A | Back alignment and structure |
|---|
| >1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A* | Back alignment and structure |
|---|
| >2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A | Back alignment and structure |
|---|
| >1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A | Back alignment and structure |
|---|
| >2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A | Back alignment and structure |
|---|
| >2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} SCOP: b.62.1.1 PDB: 3t1u_A* | Back alignment and structure |
|---|
| >2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ... | Back alignment and structure |
|---|
| >1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A | Back alignment and structure |
|---|
| >3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} SCOP: b.62.1.1 PDB: 3o7t_A | Back alignment and structure |
|---|
| >2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus} | Back alignment and structure |
|---|
| >1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1 | Back alignment and structure |
|---|
| >2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1 | Back alignment and structure |
|---|
| >3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens} | Back alignment and structure |
|---|
| >2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A* | Back alignment and structure |
|---|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
| >3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
| >3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 344 | ||||
| d1zkca1 | 178 | b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans iso | 1e-48 | |
| d1xwna1 | 166 | b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isome | 6e-46 | |
| d2ok3a1 | 159 | b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B | 5e-41 | |
| d1w74a_ | 171 | b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase | 6e-35 | |
| d2fu0a1 | 155 | b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w { | 6e-34 | |
| d2cfea1 | 162 | b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s | 2e-33 | |
| d2b71a1 | 169 | b.62.1.1 (A:23-191) Cyclophilin-like protein PY006 | 2e-33 | |
| d2c3ba1 | 171 | b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Asper | 9e-33 | |
| d2rmca_ | 182 | b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus | 1e-30 | |
| d1a33a_ | 174 | b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode ( | 2e-29 | |
| d1h0pa_ | 182 | b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabd | 4e-29 | |
| d1qnga_ | 170 | b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium | 5e-29 | |
| d2igva1 | 172 | b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caeno | 8e-29 | |
| d1xo7a_ | 166 | b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosom | 2e-28 | |
| d2a2na1 | 164 | b.62.1.1 (A:483-646) Peptidylprolyl isomerase doma | 5e-28 | |
| d1lopa_ | 164 | b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase | 3e-27 | |
| d1qoia_ | 173 | b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Hom | 8e-25 | |
| d2r99a1 | 161 | b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl | 8e-25 | |
| d1v9ta_ | 166 | b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase | 3e-24 | |
| d1z81a1 | 186 | b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plas | 2e-23 | |
| d1ihga2 | 195 | b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain | 3e-23 | |
| d2z6wa1 | 164 | b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl c | 7e-23 |
| >d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]} Length = 178 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Cyclophilin-like superfamily: Cyclophilin-like family: Cyclophilin (peptidylprolyl isomerase) domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 159 bits (403), Expect = 1e-48
Identities = 73/168 (43%), Positives = 106/168 (63%), Gaps = 4/168 (2%)
Query: 13 GKVIVKTTHGPIDIELWPKEAPKAVRNFVQLCLEGYFDNTIFHRIIKGFLVQGGDPTGTG 72
G V + T G +++EL PK NF++LC + Y+D TIFHR I+ F++QGGDPTGTG
Sbjct: 1 GYVRLHTNKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQGGDPTGTG 60
Query: 73 TGGESIYGGNFADEFHSRLRFNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFG 132
TGGES +G F DEF L RG+++ AN+G P+SN SQFFI+ C +LD+K+TIFG
Sbjct: 61 TGGESYWGKPFKDEFRPNLSHTGRGILSMANSG-PNSNRSQFFITFRSCAYLDKKHTIFG 119
Query: 133 KVTGDSIFNLLRLGEVDTD-KNDRPLDPPPKLLSVEVLWNPFEDIVPR 179
+V L + V++D K DRP + ++ + V +P+E+ +
Sbjct: 120 RVV-GGFDVLTAMENVESDPKTDRPKE-EIRIDATTVFVDPYEEADAQ 165
|
| >d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
| >d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
| >d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 171 | Back information, alignment and structure |
|---|
| >d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]} Length = 155 | Back information, alignment and structure |
|---|
| >d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]} Length = 162 | Back information, alignment and structure |
|---|
| >d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]} Length = 169 | Back information, alignment and structure |
|---|
| >d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]} Length = 171 | Back information, alignment and structure |
|---|
| >d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]} Length = 182 | Back information, alignment and structure |
|---|
| >d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]} Length = 174 | Back information, alignment and structure |
|---|
| >d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]} Length = 182 | Back information, alignment and structure |
|---|
| >d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]} Length = 170 | Back information, alignment and structure |
|---|
| >d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]} Length = 172 | Back information, alignment and structure |
|---|
| >d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]} Length = 166 | Back information, alignment and structure |
|---|
| >d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
| >d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 164 | Back information, alignment and structure |
|---|
| >d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
| >d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 161 | Back information, alignment and structure |
|---|
| >d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 166 | Back information, alignment and structure |
|---|
| >d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]} Length = 186 | Back information, alignment and structure |
|---|
| >d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]} Length = 195 | Back information, alignment and structure |
|---|
| >d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 344 | |||
| d1zkca1 | 178 | Peptidyl-prolyl cis-trans isomerase-like 2, Cyclop | 100.0 | |
| d2ok3a1 | 159 | Cyclophilin-like protein PPIL3B {Human (Homo sapie | 100.0 | |
| d2fu0a1 | 155 | Putative cyclophilin PFE0505w {Plasmodium falcipar | 100.0 | |
| d1xwna1 | 166 | Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 | 100.0 | |
| d2b71a1 | 169 | Cyclophilin-like protein PY00693 {Plasmodium yoeli | 100.0 | |
| d1w74a_ | 171 | Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycob | 100.0 | |
| d2a2na1 | 164 | Peptidylprolyl isomerase domain and WD repeat-cont | 100.0 | |
| d2rmca_ | 182 | Cyclophilin (eukaryotic) {Mouse (Mus musculus), va | 100.0 | |
| d1v9ta_ | 166 | Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche | 100.0 | |
| d1xo7a_ | 166 | Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId | 100.0 | |
| d1h0pa_ | 182 | Cyclophilin (eukaryotic) {Caenorhabditis elegans, | 100.0 | |
| d1lopa_ | 164 | Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche | 100.0 | |
| d2cfea1 | 162 | Cyclophilin-like allergen Mal s 6 {Malassezia symp | 100.0 | |
| d1qoia_ | 173 | Cyclophilin (eukaryotic) {Human (Homo sapiens), U4 | 100.0 | |
| d2igva1 | 172 | Cyclophilin (eukaryotic) {Caenorhabditis elegans, | 100.0 | |
| d2z6wa1 | 164 | Mitochondrial peptidyl-prolyl cis-trans isomerase, | 100.0 | |
| d1a33a_ | 174 | Cyclophilin (eukaryotic) {Nematode (Brugia malayi) | 100.0 | |
| d1qnga_ | 170 | Cyclophilin (eukaryotic) {Plasmodium falciparum [T | 100.0 | |
| d2r99a1 | 161 | Mitochondrial peptidyl-prolyl cis-trans isomerase, | 100.0 | |
| d1ihga2 | 195 | Cyclophilin 40 isomerase domain {Cow (Bos taurus) | 100.0 | |
| d1z81a1 | 186 | Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId | 100.0 | |
| d2c3ba1 | 171 | Cyclophilin (eukaryotic) {Aspergillus fumigatus [T | 100.0 |
| >d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Cyclophilin-like superfamily: Cyclophilin-like family: Cyclophilin (peptidylprolyl isomerase) domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-46 Score=333.67 Aligned_cols=164 Identities=45% Similarity=0.848 Sum_probs=156.9
Q ss_pred cEEEEEecceeEEEEEcCCCChHHHHHHHHHHhcCCccCceeEEeecCcEEEccCCCCCCCCCCcccCCCCCCCcCCCcc
Q 042423 13 GKVIVKTTHGPIDIELWPKEAPKAVRNFVQLCLEGYFDNTIFHRIIKGFLVQGGDPTGTGTGGESIYGGNFADEFHSRLR 92 (344)
Q Consensus 13 ~kV~l~Ts~G~I~IEL~~d~aP~tv~NFl~Lc~~g~Ydgt~FhRVip~fiIQgGDp~g~G~gg~siyg~~f~dE~~~rlk 92 (344)
|+|.|+|+.|+|+|+||++.||+||+||++||+.+||+|+.|||++++|++|+|++..+++++.+.++.++++|..+.++
T Consensus 1 ~~v~l~T~~G~i~IeL~~~~aP~tv~nF~~L~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~E~~~~l~ 80 (178)
T d1zkca1 1 GYVRLHTNKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQGGDPTGTGTGGESYWGKPFKDEFRPNLS 80 (178)
T ss_dssp EEEEEEETTEEEEEEECTTTSHHHHHHHHHHHHTTTTTTEEEEEEETTTEEEECCTTSSSSCCCBTTBSCBCCCCCTTCC
T ss_pred CEEEEEeCCEEEEEEEcCCCChHHHHHHHHHHhcCCcCceEeeeccceeEEecCCccCCCCCCcccCCCCcCCccccccC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999988899
Q ss_pred cccCceeEEecCCCCCCCCceEEEecCCCCCCCCCCeEEEEEEcCceeeeeecccccCC-CCCCCCCCCcEEEEEEEecC
Q 042423 93 FNHRGLVACANAGSPHSNGSQFFISLDRCDWLDRKNTIFGKVTGDSIFNLLRLGEVDTD-KNDRPLDPPPKLLSVEVLWN 171 (344)
Q Consensus 93 ~~~rGlVsma~~g~~~sngSQFFITL~~~p~LDgk~tVFGrVvg~gi~vL~kI~~v~td-~~~rP~~~~i~I~~~~Vl~~ 171 (344)
|+.+|+|||++++ +++++|||||+|+++++||++|+|||+|++ |+++|++|++++++ .+++|+.+ ++|.+|+|+.+
T Consensus 81 ~~~~G~lsma~~~-~~s~~sqF~It~~~~~~ld~~~~vFG~Vv~-G~dvl~~I~~~~t~~~~~~P~~~-v~I~~~~Il~~ 157 (178)
T d1zkca1 81 HTGRGILSMANSG-PNSNRSQFFITFRSCAYLDKKHTIFGRVVG-GFDVLTAMENVESDPKTDRPKEE-IRIDATTVFVD 157 (178)
T ss_dssp SCSTTEEEECCSS-TTCBCSCEEEESSCCGGGTTTSCEEEEEEE-CHHHHHHHHHSCBCTTTCCBSSC-CEEEEEEEEEC
T ss_pred CCCCeEEEEeecC-CCCccceeeccccCCcccCCcceEEEEeeC-cHHHHHHHHcCCCCCCCCccCCC-eEEEEEEEEcC
Confidence 9999999999998 999999999999999999999999999996 89999999999997 46899999 99999999999
Q ss_pred CCCcccCC
Q 042423 172 PFEDIVPR 179 (344)
Q Consensus 172 PF~Di~~r 179 (344)
||+|+.++
T Consensus 158 pf~~~~~~ 165 (178)
T d1zkca1 158 PYEEADAQ 165 (178)
T ss_dssp TTHHHHHH
T ss_pred CcchhhHH
Confidence 99998544
|
| >d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
| >d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]} | Back information, alignment and structure |
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| >d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
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| >d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]} | Back information, alignment and structure |
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| >d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
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| >d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]} | Back information, alignment and structure |
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| >d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]} | Back information, alignment and structure |
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| >d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]} | Back information, alignment and structure |
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| >d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]} | Back information, alignment and structure |
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| >d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]} | Back information, alignment and structure |
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| >d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
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| >d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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| >d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]} | Back information, alignment and structure |
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| >d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]} | Back information, alignment and structure |
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