Citrus Sinensis ID: 042427

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
Protein Sequence
MASTKLLTFFFPASLLLLSISPFGSSENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGNSMMQPDGTFVCQHGPGECLLNTIEACTISIYPDVVQHFSFIHCVERLALEKRQAEWINCFELTKLGRVPIDCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQPLQEDFMNFANHVCKAYKGTGLPEACRSLPHNIPVNAESTSSVCYTGEGKN
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHcccccccccEEEEEEEEcccHHHHHHHHHHHHHHHHHcccccEEEEEEEEEEcEEcccccEEEcccHHHHHccHHHHcccccccccccccccEEEEEEcHHHHHHHHHHHHHHccccccccHHHHccccHHHHHHHHHHHHHHccccccccEEEEEccEEcHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHccccccccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHccEEEEEEEccccEEccccEEEEcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHccccHHHHHHcccccHHHHHHHHHHHHHcccccccEEEEEEEcccccHHHHHHHHHHHHHHHccccccHHHHHccccccccccccccEEEcccccc
Coil and Loop (DISEMBL)
mastklltfffpasllllsispfgssenvTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRmipwgnsmmqpdgtfvcqhgpgecllnTIEActisiypdvvqhFSFIHCVERLALEKRQAEWINCFeltklgrvpidcYRNGLGKLLEQKYAtetaqlkpphrfvpwvvvnnqplqeDFMNFANHVCKaykgtglpeacrslphnipvnaestssvcytgegkn
Flexible Loop (DISEMBL)
MASTKLLTFFFPASLLLLSISPFGSSENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGNSMMQPDGTFVCQHGPGECLLNTIEACTISIYPDVVQHFSFIHCVERLALEKRQAEWINCfeltklgrvpIDCYRNGLGKLLEQKYATEtaqlkpphrfVPWVVVNNQPLQEDFMNFANHVCKAYKGTGLPEACRSLPhnipvnaestssvcytgegkn
Low Complexity Region (SEG)
MASTKLLTFFFPASLLLLSISPFGSSENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGNSMMQPDGTFVCQHGPGECLLNTIEACTISIYPDVVQHFSFIHCVERLALEKRQAEWINCFELTKLGRVPIDCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQPLQEDFMNFANHVCKAYKGTGLPEACRSLPHNIPVNAESTSSVCYTGEGKN
Disordered region (IsUnstruct)
*****LLTFFFPASLLLLSISPFGSSENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGNSMMQPDGTFVCQHGPGECLLNTIEACTISIYPDVVQHFSFIHCVERLALEKRQAEWINCFELTKLGRVPIDCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQPLQEDFMNFANHVCKAYKGTGLPEACRSLPHNI******************
Disordered Region (DISOPRED)
**STKLLTFFFPASLLLLSISPFGSSENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGNSMMQPDGTFVCQHGPGECLLNTIEACTISIYPDVVQHFSFIHCVERLALEKRQAEWINCFELTKLGRVPIDCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQPLQEDFMNFANHVCKAYKGTGLPEA*******************YT*****
Disordered Region (DISEMBL)
MASTKLLTFFFPASLLLLSISPFGSSENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGNSMMQPDGTFVCQHGPGECLLNTIEACTISIYPDVVQHFSFIHCVERLALEKRQAEWINCFELTKLGRVPIDCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQPLQEDFMNFANHVCKAYKGTGLPEACRSLPHNIPVNAEST***********
Disordered Region (DISPRO)
**STKLLTFFFPASLLLLSISPFGSSENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGNSMMQPDGTFVCQHGPGECLLNTIEACTISIYPDVVQHFSFIHCVERLALEKRQAEWINCFELTKLGRVPIDCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQPLQEDFMNFANHVCKAYKGTGLPEACRSLP*********************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASTKLLTFFFPASLLLLSISPFGSSENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGNSMMQPDGTFVCQHGPGECLLNTIEACTISIYPDVVQHFSFIHCVERLALEKRQAEWINCFELTKLGRVPIDCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQPLQEDFMNFANHVCKAYKGTGLPEACRSLPHNIPVNAESTSSVCYTGEGKN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	229	2.2.26 [Sep-21-2011]
Q499T2	248	Gamma-interferon-inducibl	yes	no	0.873	0.806	0.318	5e-21
Q9ESY9	248	Gamma-interferon-inducibl	yes	no	0.812	0.75	0.328	1e-20
O17861	277	GILT-like protein F37H8.5	yes	no	0.733	0.606	0.329	8e-20
P13284	250	Gamma-interferon-inducibl	yes	no	0.794	0.728	0.333	2e-19
A6QPN6	244	Gamma-interferon-inducibl	yes	no	0.759	0.713	0.311	4e-19
B3SP85	246	Gamma-interferon-inducibl	yes	no	0.825	0.768	0.314	3e-17
P34276	323	GILT-like protein C02D5.2	no	no	0.733	0.520	0.253	2e-09
Q61Z40	220	GILT-like protein CBG0328	N/A	no	0.812	0.845	0.233	5e-09
Q23570	218	GILT-like protein ZK669.3	no	no	0.742	0.779	0.237	7e-08

>sp|Q499T2|GILT_RAT Gamma-interferon-inducible lysosomal thiol reductase OS=Rattus norvegicus GN=Ifi30 PE=2 SV=1

 Score =  101 bits (251), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 106/220 (48%), Gaps = 20/220 (9%)

Query: 7   LTFFFPASLLLLSISPFGSSENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRM 66
           L  F P  LL        S+  V VS+YYE+LC  C  F+V +L   +   +  I+N+ +
Sbjct: 45  LCLFGPRRLL--------SAPPVNVSLYYESLCGACRYFLVRNLFPTWLMVME-IMNITL 95

Query: 67  IPWGNSMMQP-DGT--FVCQHGPGECLLNTIEACTISIYPDVVQHFSFIHCVERLALEKR 123
           +P+GN+  +   GT  F CQHG  EC LN +EAC +          + +   E   +EK+
Sbjct: 96  VPYGNAQERNVSGTWEFTCQHGELECKLNKVEACLLDKLEKEAAFLTIVCMEEMEDMEKK 155

Query: 124 QAEWINCFELTKLGRVPIDCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQPLQED 183
               +  +         ++C     G  L  + A  T  L+PPH +VPWV+VN +PL  D
Sbjct: 156 LGPCLQLYVPEVSPESIMECATGKRGTELMHENAQLTDALQPPHEYVPWVLVNEKPLT-D 214

Query: 184 FMNFANHVCKAYKGTGLPEACRSLPHNIPVNAESTSSVCY 223
                + VC+ Y+GT  P+ C S+       A++   VCY
Sbjct: 215 PSQLLSSVCELYQGTEKPDICSSM-------ADAPREVCY 247

Lysosomal thiol reductase that can reduce protein disulfide bonds. May facilitate the complete unfolding of proteins destined for lysosomal degradation. Plays an important role in antigen processing. Facilitates the generation of MHC class II-restricted epitodes from disulfide bond-containing antigen by the endocytic reduction of disulfide bonds. Facilitates also MHC class I-restricted recognition of exogenous antigens containing disulfide bonds by CD8+ T-cells or crosspresentation.
Rattus norvegicus (taxid: 10116)
EC: 1EC: .EC: 8EC: .EC: -EC: .EC: -

>sp|Q9ESY9|GILT_MOUSE Gamma-interferon-inducible lysosomal thiol reductase OS=Mus musculus GN=Ifi30 PE=1 SV=3

 Score =  100 bits (248), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/198 (32%), Positives = 98/198 (49%), Gaps = 12/198 (6%)

Query: 29  VTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGNSMMQP-DGT--FVCQHG 85
           V VS+YYE+LC  C  F+V  L   +   +  I+N+ ++P+GN+  +   GT  F CQHG
Sbjct: 59  VRVSLYYESLCGACRYFLVRDLFPTWLMVME-IMNITLVPYGNAQERNVSGTWEFTCQHG 117

Query: 86  PGECLLNTIEACTISIYPDVVQHFSFIHCVERLALEKRQAEWINCFELTKLGRVPIDCYR 145
             EC LN +EAC +          + +   E   +EK+    +  +         ++C  
Sbjct: 118 ELECRLNMVEACLLDKLEKEAAFLTIVCMEEMDDMEKKLGPCLQVYAPEVSPESIMECAT 177

Query: 146 NGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQPLQEDFMNFANHVCKAYKGTGLPEACR 205
              G  L  + A  T  L PPH +VPWV+VN +PL+ D     + VC+ Y+GT  P+ C 
Sbjct: 178 GKRGTQLMHENAQLTDALHPPHEYVPWVLVNEKPLK-DPSELLSIVCQLYQGTEKPDICS 236

Query: 206 SLPHNIPVNAESTSSVCY 223
           S+       A+S   VCY
Sbjct: 237 SI-------ADSPRKVCY 247

Lysosomal thiol reductase that can reduce protein disulfide bonds. May facilitate the complete unfolding of proteins destined for lysosomal degradation. Plays an important role in antigen processing. Facilitates the generation of MHC class II-restricted epitodes from disulfide bond-containing antigen by the endocytic reduction of disulfide bonds. Facilitates also MHC class I-restricted recognition of exogenous antigens containing disulfide bonds by CD8+ T-cells or crosspresentation.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|O17861|YVRI_CAEEL GILT-like protein F37H8.5 OS=Caenorhabditis elegans GN=F37H8.5 PE=1 SV=1

 Score = 97.4 bits (241), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 95/185 (51%), Gaps = 17/185 (9%)

Query: 26  SENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGNSMMQPDGTFVCQHG 85
           ++ + ++V  E LCP C +F+   L  +  K   + VN+ ++P+GN+ +  DGT  CQHG
Sbjct: 73  NQKINITVLIEALCPDCQNFLTKQLYPIVFKNFANYVNIELVPFGNAKVLEDGTIKCQHG 132

Query: 86  PGECLLNTIEACTISIYPDVVQHFSFIHCVERLALEKRQAEWIN----CFELTKLG---- 137
             EC +N  E C I    D       + C+E  +L+K+  E+ +    CFE  ++G    
Sbjct: 133 EEECSINKFEGCFIDSMQD-QSPLPTLSCIEE-SLQKK-VEFADAVQQCFEKLQIGGDIQ 189

Query: 138 RVPIDCYRNGLGKLLEQKYATETAQLKPP-HRFVPWVVVNNQPLQEDFMNFANH----VC 192
           R+   C  + LG  L+ K A  TA + P  H+FVPWV++N   L   F  F N     +C
Sbjct: 190 RLTQSCLVSKLGADLQNKAAAATANVWPEQHKFVPWVIINGVSL-TSFQGFQNQLPTLLC 248

Query: 193 KAYKG 197
           + Y G
Sbjct: 249 EWYSG 253

Caenorhabditis elegans (taxid: 6239)

>sp|P13284|GILT_HUMAN Gamma-interferon-inducible lysosomal thiol reductase OS=Homo sapiens GN=IFI30 PE=1 SV=3

 Score = 96.3 bits (238), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/201 (33%), Positives = 95/201 (47%), Gaps = 19/201 (9%)

Query: 29  VTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGNSMMQ---PDGTFVCQHG 85
           V V++YYE LC  C  F++  L   +   +  I+N+ ++P+GN+  Q       F CQHG
Sbjct: 62  VNVTLYYEALCGGCRAFLIRELFPTWLLVM-EILNVTLVPYGNAQEQNVSGRWEFKCQHG 120

Query: 86  PGECLLNTIEACTISIYPDVVQHFSFIHCVERLALEKRQAEWINCFELTKLGRVP---ID 142
             EC  N +EAC +    D+   F  I C+E    E  +     C +L   G  P   ++
Sbjct: 121 EEECKFNKVEACVLDEL-DMELAFLTIVCMEEF--EDMERSLPLCLQLYAPGLSPDTIME 177

Query: 143 CYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQPLQEDFMNFANHVCKAYKGTGLPE 202
           C     G  L    A  T  L+PPH +VPWV VN +PL ED       VC+ Y+G   P+
Sbjct: 178 CAMGDRGMQLMHANAQRTDALQPPHEYVPWVTVNGKPL-EDQTQLLTLVCQLYQGKK-PD 235

Query: 203 ACRSLPHNIPVNAESTSSVCY 223
            C       P +  S  SVC+
Sbjct: 236 VC-------PSSTSSLRSVCF 249

Lysosomal thiol reductase that can reduce protein disulfide bonds. May facilitate the complete unfolding of proteins destined for lysosomal degradation. Plays an important role in antigen processing. Facilitates the generation of MHC class II-restricted epitodes from disulfide bond-containing antigen by the endocytic reduction of disulfide bonds (By similarity). Facilitates also MHC class I-restricted recognition of exogenous antigens containing disulfide bonds by CD8+ T-cells or crosspresentation.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|A6QPN6|GILT_BOVIN Gamma-interferon-inducible lysosomal thiol reductase OS=Bos taurus GN=IFI30 PE=2 SV=1

 Score = 95.1 bits (235), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 91/180 (50%), Gaps = 6/180 (3%)

Query: 29  VTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGNSM---MQPDGTFVCQHG 85
           V VS+YYE LCP C +F++  L   +   L  I+N+ ++P+GN+    +     F CQHG
Sbjct: 56  VNVSLYYEALCPGCREFLIRELFPTWLMVL-EILNVTLVPYGNAQERNVSGKWEFTCQHG 114

Query: 86  PGECLLNTIEACTISIYPDVVQHFSFIHCVERLALEKRQAEWINCFELTKLGRVPIDCYR 145
             ECLLN +EAC +      +   + +   E   +E+     +  +         ++C  
Sbjct: 115 ERECLLNKVEACLLDQLEQKIAFLTIVCLEEMDDMEQNLKPCLQIYAPKVSADSIMECAT 174

Query: 146 NGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQPLQEDFMNFANHVCKAYKGTGLPEACR 205
              G  L    A  T  L+PPH++VPWVVVN + ++ D  +  + VC+ Y+G   P+ C+
Sbjct: 175 GNRGMQLLHINAQLTDALRPPHKYVPWVVVNGEHMK-DAEHLLHLVCRLYQGQK-PDVCQ 232

Lysosomal thiol reductase that can reduce protein disulfide bonds. May facilitate the complete unfolding of proteins destined for lysosomal degradation. Plays an important role in antigen processing. Facilitates the generation of MHC class II-restricted epitodes from disulfide bond-containing antigen by the endocytic reduction of disulfide bonds. Facilitates also MHC class I-restricted recognition of exogenous antigens containing disulfide bonds by CD8+ T-cells or crosspresentation.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|B3SP85|GILT_PIG Gamma-interferon-inducible-lysosomal thiol reductase OS=Sus scrofa GN=IFI30 PE=2 SV=1

 Score = 88.6 bits (218), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 101/210 (48%), Gaps = 21/210 (10%)

Query: 22  PFGSSEN--VTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGNSM---MQP 76
           P G S+   V V++YYE+LC  C  F+V  L   +   +  I+N+ ++P+GN+    +  
Sbjct: 49  PVGKSDPPPVNVNLYYESLCNGCRYFLVRELFPTWLM-VWEILNVTLVPYGNAQERNVSG 107

Query: 77  DGTFVCQHGPGECLLNTIEACTISIYPDVVQHFSFIHCVERLALEKRQAEWINCFELTKL 136
              F CQHG  EC +N +EAC +      +   + + C+E L   ++  E   C ++   
Sbjct: 108 RWEFTCQHGEQECKMNKVEACLLDKLEKNMAFLTIV-CIEELDDMEKNLE--PCLQIYAP 164

Query: 137 GRVP---IDCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQPLQEDFMNFANHVCK 193
              P   ++C     G  L    A  T  LKPPH +VPWVVVN +P+ E        VC+
Sbjct: 165 KVSPDSIMECAMGDRGMQLLHINAQLTDALKPPHEYVPWVVVNGKPMTEKD-QLLRLVCQ 223

Query: 194 AYKGTGLPEACRSLPHNIPVNAESTSSVCY 223
            Y+G   P+ C+ L       A S   VC+
Sbjct: 224 LYEGEK-PDVCQIL-------ASSHKEVCF 245

Lysosomal thiol reductase that can reduce protein disulfide bonds. May facilitate the complete unfolding of proteins destined for lysosomal degradation. Plays an important role in antigen processing. Facilitates the generation of MHC class II-restricted epitodes from disulfide bond-containing antigen by the endocytic reduction of disulfide bonds. Facilitates also MHC class I-restricted recognition of exogenous antigens containing disulfide bonds by CD8+ T-cells or crosspresentation.

Sus scrofa (taxid: 9823)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|P34276|YKJ2_CAEEL GILT-like protein C02D5.2 OS=Caenorhabditis elegans GN=C02D5.2 PE=3 SV=1

 Score = 62.8 bits (151), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 83/189 (43%), Gaps = 21/189 (11%)

Query: 29  VTVSVYYETLCPYCADFIVNHLVKLFQ-KGLNSIVNLRMIPWGNSMMQPDGTFV---CQH 84
           V + VY E  CP  + F    L K +   G  + + L +IP+G +     G      CQH
Sbjct: 139 VKLDVYMEAQCPDTSRFFRQQLKKAWDILGRLNRIELNVIPFGKARCTEKGNDFECQCQH 198

Query: 85  GPGECLLNTIEACTISIYPDVVQHFSFIHCVE-RLALEKRQAEWINCF------ELTKLG 137
           GP EC +N +  C I  +    ++   + C++ + +L+    E + C       E  ++ 
Sbjct: 199 GPTECQINQLMNCVIDRFGFPHRYLPGVLCMQGKYSLD----EAMKCVTENYPSEYERMR 254

Query: 138 RVPIDCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQPLQEDFMNFANHVCKAYKG 197
               +C     G+ L      +TA L P   F+PW+V+N     +   +   +VC+A + 
Sbjct: 255 ----ECASGTRGRRLLALSGQKTASLTPAIDFIPWIVINGSRNSDALYDLTQNVCEAMQ- 309

Query: 198 TGLPEACRS 206
             +P AC+ 
Sbjct: 310 -PMPSACKD 317

Caenorhabditis elegans (taxid: 6239)

>sp|Q61Z40|YO30_CAEBR GILT-like protein CBG03282 OS=Caenorhabditis briggsae GN=CBG03282 PE=3 SV=1

 Score = 61.6 bits (148), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 84/197 (42%), Gaps = 11/197 (5%)

Query: 8   TFFFPASLLLLSISPFGSSENVTVSVYYETLCPYCADFIVNHLVKLFQK-GLNSIVNLRM 66
           +F F   L     +   + E V +  + E  C   + ++  H + +++  G    +N   
Sbjct: 12  SFLFILVLCSSKDTEVNNGEKVNIVAFGEGRCSDTSFWMKWHWLPMWRMLGSTGRINFEY 71

Query: 67  IPWG------NSMMQPDGTFVCQHGPGECLLNTIEACTISIYPDVVQHFSFIHCVERLAL 120
            P+G      +S    D    C HG  ECLLN ++AC I   P+  ++   + C++    
Sbjct: 72  HPYGIKTTCVDSDSGDDVVCECHHGARECLLNQLQACVIEALPNFEEYMEVVTCIQGKQN 131

Query: 121 EKRQAEWINCF-ELTKLGRVP-IDCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQ 178
               AE   CF E +KL R   + C  +  G+ L   +    AQ+ P   + PW+++N +
Sbjct: 132 ISMAAE--ACFNEPSKLERAKMMSCADSRHGRKLFSDHENFVAQMAPEMDWAPWILINGK 189

Query: 179 PLQEDFMNFANHVCKAY 195
             +E   +    +C  +
Sbjct: 190 RYKEAEEDLWQFLCDRF 206

Caenorhabditis briggsae (taxid: 6238)

>sp|Q23570|YO30_CAEEL GILT-like protein ZK669.3 OS=Caenorhabditis elegans GN=ZK669.3 PE=1 SV=1

 Score = 57.8 bits (138), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 77/181 (42%), Gaps = 11/181 (6%)

Query: 24  GSSENVTVSVYYETLCPYCADFIVNHLVKLFQK-GLNSIVNLRMIPWG------NSMMQP 76
            + + V +  + E  C   + ++  H + +++  G    +N    P+G      +S    
Sbjct: 26  ANGDMVNIVAFGEGRCSDTSYWMKWHWLPMWRMLGSTGRINFDYHPYGIKTTCVDSESAD 85

Query: 77  DGTFVCQHGPGECLLNTIEACTISIYPDVVQHFSFIHCVERLALEKRQAEWINCFEL-TK 135
           D    C HG  ECLLN ++AC I   P+   +   + C++        AE   CFE  TK
Sbjct: 86  DVVCDCHHGNRECLLNQLQACVIEALPNFEDYMEVVTCIQGKQNISMAAE--VCFEGPTK 143

Query: 136 LGRVP-IDCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQPLQEDFMNFANHVCKA 194
           L R   ++C  +  G+ L        AQ+ P   + PW+++N    +E   +    +C  
Sbjct: 144 LDRTKMMECAESRHGRKLFSDQENIVAQMAPEMDWAPWILINGTRYKEAEEDLWQFLCDR 203

Query: 195 Y 195
           +
Sbjct: 204 F 204

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	229
224139218	242	predicted protein [Populus trichocarpa]	0.973	0.921	0.627	5e-83
255571433	251	Gamma-interferon-inducible lysosomal thi	1.0	0.912	0.612	2e-79
356496241	263	PREDICTED: gamma-interferon-inducible ly	0.890	0.775	0.642	2e-77
449461757	238	PREDICTED: gamma-interferon-inducible ly	0.895	0.861	0.629	2e-77
357468571	351	Gamma-interferon-inducible lysosomal thi	0.890	0.581	0.620	9e-75
297735627	317	unnamed protein product [Vitis vinifera]	0.986	0.712	0.568	2e-72
225439464	261	PREDICTED: gamma-interferon-inducible ly	0.986	0.865	0.568	2e-72
147859355	261	hypothetical protein VITISV_043667 [Viti	0.986	0.865	0.568	4e-72
357468573	261	Gamma-interferon-inducible lysosomal thi	0.895	0.785	0.580	8e-68
297806055	236	predicted protein [Arabidopsis lyrata su	0.965	0.936	0.513	2e-65

>gi|224139218|ref|XP_002323009.1| predicted protein [Populus trichocarpa] gi|118482314|gb|ABK93083.1| unknown [Populus trichocarpa] gi|222867639|gb|EEF04770.1| predicted protein [Populus trichocarpa]

 Score =  313 bits (801), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 143/228 (62%), Positives = 178/228 (78%), Gaps = 5/228 (2%)

Query: 4   TKLLTFFFPASLLLLSISPFGSSENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVN 63
           T  L F   A  L+ S S   SS+NVT+S+YYETLCPYCADFIVNHLVK+F KGL SIVN
Sbjct: 9   TAFLLFICTALFLIASTS---SSQNVTLSLYYETLCPYCADFIVNHLVKVFDKGLISIVN 65

Query: 64  LRMIPWGNSMMQPDGTFVCQHGPGECLLNTIEACTISIYPDVVQHFSFIHCVERLALEKR 123
           LR+IPWGN+ +QP+G+FVCQHG  EC LN IEACT++IYPD V+HF FIHCVE+++LE +
Sbjct: 66  LRLIPWGNAFIQPNGSFVCQHGTNECFLNAIEACTVTIYPDAVRHFRFIHCVEKMSLENK 125

Query: 124 QAEWINCFELTKLGRVPIDCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQPLQED 183
             EW+NCF ++ LG+ PIDCY +G G++L++KYA ET+QL PPHRFVPWVVVNNQPL+ED
Sbjct: 126 MNEWVNCFGMSGLGKAPIDCYTSGYGEVLQRKYAAETSQLNPPHRFVPWVVVNNQPLRED 185

Query: 184 FMNFANHVCKAYKGTGLPEACRSLP--HNIPVNAESTSSVCYTGEGKN 229
           F NF ++VCKAY+GT +PEAC+SLP   N        +SVCY  +  N
Sbjct: 186 FENFVSYVCKAYRGTKIPEACKSLPLESNSSQKENHINSVCYVDQTSN 233

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571433|ref|XP_002526664.1| Gamma-interferon-inducible lysosomal thiol reductase precursor, putative [Ricinus communis] gi|223533964|gb|EEF35686.1| Gamma-interferon-inducible lysosomal thiol reductase precursor, putative [Ricinus communis]

 Score =  301 bits (770), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 144/235 (61%), Positives = 173/235 (73%), Gaps = 6/235 (2%)

Query: 1   MASTK-LLTFFFPASLLL---LSISPFGSSENVTVSVYYETLCPYCADFIVNHLVKLFQK 56
           MAS + +L+FF   + +    L+ SP    + VT+ VYYETLCPYCADFIVN LVK+F K
Sbjct: 1   MASLRPVLSFFLVITCIFFCCLASSPSSGDDTVTLYVYYETLCPYCADFIVNRLVKVFDK 60

Query: 57  GLNSIVNLRMIPWGNSMMQPDGTFVCQHGPGECLLNTIEACTISIYPDVVQHFSFIHCVE 116
           GL SIV LRMIPWGN+ +Q DG+FVCQHGP EC LN IEAC I+IYPDV +HF FIHC+E
Sbjct: 61  GLFSIVKLRMIPWGNAFVQSDGSFVCQHGPNECFLNAIEACAITIYPDVERHFRFIHCME 120

Query: 117 RLALEKRQAEWINCFELTKLGRVPIDCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVN 176
            LALE +  EW+NCFE++ LG   IDCY +G G +LEQK+A ETAQL PPHRFVPWVVVN
Sbjct: 121 SLALENKLNEWVNCFEMSALGTEAIDCYTSGYGNMLEQKFAAETAQLSPPHRFVPWVVVN 180

Query: 177 NQPLQEDFMNFANHVCKAYKGTGLPEACRSLPH--NIPVNAESTSSVCYTGEGKN 229
           NQPLQEDF NF ++ C+AY GT +PEAC SLP   N  +    TS VC+  +  N
Sbjct: 181 NQPLQEDFENFVSYACRAYTGTQVPEACTSLPAETNSLLKENHTSPVCFADKTGN 235

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496241|ref|XP_003516977.1| PREDICTED: gamma-interferon-inducible lysosomal thiol reductase-like [Glycine max]

 Score =  294 bits (752), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 133/207 (64%), Positives = 160/207 (77%), Gaps = 3/207 (1%)

Query: 26  SENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGNSMMQPDGTFVCQHG 85
           +E VT+S+YYE+LCPY ADFIVNHLV+LFQ GL SI+NLR++PWGN+ + PDGT VCQHG
Sbjct: 41  NEKVTLSLYYESLCPYRADFIVNHLVRLFQTGLISILNLRLVPWGNARIAPDGTVVCQHG 100

Query: 86  PGECLLNTIEACTISIYPDVVQHFSFIHCVERLALEKRQAEWINCFELTKLGRVPIDCYR 145
             EC LNTIEAC I+IYPDVVQHF F+ C+ERL LE R  +W+NCF++T LG  PIDCY 
Sbjct: 101 DDECFLNTIEACAITIYPDVVQHFRFVRCLERLTLEGRHNQWVNCFQMTGLGTSPIDCYT 160

Query: 146 NGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQPLQEDFMNFANHVCKAYKGTGLPEACR 205
           NG GK ++QKYA ETAQL PPHRFVPWVVVNNQ LQED+ NF  ++C+AYKG  +P ACR
Sbjct: 161 NGNGKAIDQKYAKETAQLNPPHRFVPWVVVNNQALQEDYQNFVTYICRAYKGNVIPNACR 220

Query: 206 SLPHNIPVNAESTSS---VCYTGEGKN 229
           SL      + E  +S   VCY  E +N
Sbjct: 221 SLSTRTYDSNEKVNSFLPVCYVDEARN 247

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461757|ref|XP_004148608.1| PREDICTED: gamma-interferon-inducible lysosomal thiol reductase-like [Cucumis sativus] gi|449519974|ref|XP_004167009.1| PREDICTED: gamma-interferon-inducible lysosomal thiol reductase-like [Cucumis sativus]

 Score =  294 bits (752), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 131/208 (62%), Positives = 160/208 (76%), Gaps = 3/208 (1%)

Query: 25  SSENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGNSMMQPDGTFVCQH 84
           +SE VTVSVYYE LCP+CA+F+V HLVKLFQ GL S VNLRMIPWGN+ +QPDG+F CQH
Sbjct: 28  ASEKVTVSVYYEALCPFCANFVVYHLVKLFQNGLISAVNLRMIPWGNAWIQPDGSFFCQH 87

Query: 85  GPGECLLNTIEACTISIYPDVVQHFSFIHCVERLALEKRQAEWINCFELTKLGRVPIDCY 144
           GP EC+LNTIEACTIS+YPD  +HF FIHCVE L ++ R  EW  CF++ +L  +PIDCY
Sbjct: 88  GPDECMLNTIEACTISVYPDTEEHFRFIHCVEGLTVQNRHNEWTKCFDIAQLSAIPIDCY 147

Query: 145 RNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQPLQEDFMNFANHVCKAYKGTGLPEAC 204
           RNG GK+LEQ YA+ET +L PPHRFVPWV+V+N PLQED+ NF  ++CKAYKG+ +PEAC
Sbjct: 148 RNGHGKMLEQYYASETTRLNPPHRFVPWVIVDNHPLQEDYQNFMAYICKAYKGSAVPEAC 207

Query: 205 RSL---PHNIPVNAESTSSVCYTGEGKN 229
           +S+         NA   S VCY    +N
Sbjct: 208 KSINLKNRQYLDNASGGSQVCYATTTRN 235

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357468571|ref|XP_003604570.1| Gamma-interferon-inducible lysosomal thiol reductase [Medicago truncatula] gi|355505625|gb|AES86767.1| Gamma-interferon-inducible lysosomal thiol reductase [Medicago truncatula]

 Score =  285 bits (730), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 129/208 (62%), Positives = 157/208 (75%), Gaps = 4/208 (1%)

Query: 26  SENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGNSMMQPDGTFVCQHG 85
            + VT+S+YYE+LCP+CADFIVN LV+LFQ GL SIV+LRM+PWGN+ ++PDGTF CQHG
Sbjct: 44  DKKVTMSIYYESLCPFCADFIVNDLVRLFQTGLISIVDLRMVPWGNAGIKPDGTFDCQHG 103

Query: 86  PGECLLNTIEACTISIYPDVVQHFSFIHCVERLALEKRQAEWINCFELTKLGRVPIDCYR 145
             EC LNTIEAC I+IYPDV QHF FI C+ERL LE R  EW NCF++T LG +PIDC +
Sbjct: 104 NDECYLNTIEACAINIYPDVAQHFKFIRCLERLTLENRHNEWFNCFQMTGLGTMPIDCSK 163

Query: 146 NGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQPLQEDFMNFANHVCKAYKGTGLPEACR 205
            G GK +EQKYA ETAQL PPHRFVPWVVVNN  LQED+ +F  ++C+AYKG   P+ACR
Sbjct: 164 TGNGKSIEQKYAKETAQLNPPHRFVPWVVVNNHALQEDYQDFMTYICRAYKGKVKPDACR 223

Query: 206 SLP----HNIPVNAESTSSVCYTGEGKN 229
           S+     +++     S   VCY  E KN
Sbjct: 224 SVSTKTYYDLNAKTNSFHPVCYVDEAKN 251

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735627|emb|CBI18121.3| unnamed protein product [Vitis vinifera]

 Score =  278 bits (710), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 133/234 (56%), Positives = 166/234 (70%), Gaps = 8/234 (3%)

Query: 4   TKLLTFFFPA------SLLLLSISPFGSSENVTVSVYYETLCPYCADFIVNHLVKLFQKG 57
           + LLTFFF +       +             VT+SVYYETLCPYC++FIV  L+K+F+ G
Sbjct: 71  STLLTFFFTSPSHSSSDVFSGVSVSSVDPNRVTLSVYYETLCPYCSNFIVRDLLKIFENG 130

Query: 58  LNSIVNLRMIPWGNSMMQPDGTFVCQHGPGECLLNTIEACTISIYPDVVQHFSFIHCVER 117
           L SIVNLRMIPWGN++++PD TF CQHGP EC+LNT+EAC I+IYP V  HF FI+CVE 
Sbjct: 131 LISIVNLRMIPWGNAVLRPDKTFQCQHGPAECVLNTVEACVINIYPRVDMHFRFIYCVEY 190

Query: 118 LALEKRQAEWINCFELTKLGRVPIDCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNN 177
           LALE +QAEW +CF+ ++LG+VPIDCY +G G  LE KYA ETA L PPH  VPWVVVN+
Sbjct: 191 LALEGKQAEWASCFDRSQLGKVPIDCYTSGYGNQLELKYAEETALLNPPHTGVPWVVVND 250

Query: 178 QPLQEDFMNFANHVCKAYKGTGLPEACRSLPHNIPVNAEST--SSVCYTGEGKN 229
           QPL+ED+ NF  +VC+AY+G  +PEACRS   NI    E    + +CY  E KN
Sbjct: 251 QPLKEDYNNFVAYVCRAYRGGNVPEACRSFQLNINSTVEENPINPLCYVNEAKN 304

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439464|ref|XP_002267105.1| PREDICTED: gamma-interferon-inducible lysosomal thiol reductase [Vitis vinifera]

 Score =  277 bits (708), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 133/234 (56%), Positives = 166/234 (70%), Gaps = 8/234 (3%)

Query: 4   TKLLTFFFPA------SLLLLSISPFGSSENVTVSVYYETLCPYCADFIVNHLVKLFQKG 57
           + LLTFFF +       +             VT+SVYYETLCPYC++FIV  L+K+F+ G
Sbjct: 15  STLLTFFFTSPSHSSSDVFSGVSVSSVDPNRVTLSVYYETLCPYCSNFIVRDLLKIFENG 74

Query: 58  LNSIVNLRMIPWGNSMMQPDGTFVCQHGPGECLLNTIEACTISIYPDVVQHFSFIHCVER 117
           L SIVNLRMIPWGN++++PD TF CQHGP EC+LNT+EAC I+IYP V  HF FI+CVE 
Sbjct: 75  LISIVNLRMIPWGNAVLRPDKTFQCQHGPAECVLNTVEACVINIYPRVDMHFRFIYCVEY 134

Query: 118 LALEKRQAEWINCFELTKLGRVPIDCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNN 177
           LALE +QAEW +CF+ ++LG+VPIDCY +G G  LE KYA ETA L PPH  VPWVVVN+
Sbjct: 135 LALEGKQAEWASCFDRSQLGKVPIDCYTSGYGNQLELKYAEETALLNPPHTGVPWVVVND 194

Query: 178 QPLQEDFMNFANHVCKAYKGTGLPEACRSLPHNIPVNAEST--SSVCYTGEGKN 229
           QPL+ED+ NF  +VC+AY+G  +PEACRS   NI    E    + +CY  E KN
Sbjct: 195 QPLKEDYNNFVAYVCRAYRGGNVPEACRSFQLNINSTVEENPINPLCYVNEAKN 248

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147859355|emb|CAN83947.1| hypothetical protein VITISV_043667 [Vitis vinifera]

 Score =  276 bits (706), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 133/234 (56%), Positives = 165/234 (70%), Gaps = 8/234 (3%)

Query: 4   TKLLTFFFPA------SLLLLSISPFGSSENVTVSVYYETLCPYCADFIVNHLVKLFQKG 57
           + LLTFFF         +             VT+SVYYETLCPYC++FIV  L+K+F+ G
Sbjct: 15  STLLTFFFTXPSHSSSDVFSGVSVSSVDPNRVTLSVYYETLCPYCSNFIVRDLLKIFENG 74

Query: 58  LNSIVNLRMIPWGNSMMQPDGTFVCQHGPGECLLNTIEACTISIYPDVVQHFSFIHCVER 117
           L SIVNLRMIPWGN++++PD TF CQHGP EC+LNT+EAC I+IYP V  HF FI+CVE 
Sbjct: 75  LISIVNLRMIPWGNAVLRPDKTFQCQHGPAECVLNTVEACVINIYPRVDMHFRFIYCVEY 134

Query: 118 LALEKRQAEWINCFELTKLGRVPIDCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNN 177
           LALE +QAEW +CF+ ++LG+VPIDCY +G G  LE KYA ETA L PPH  VPWVVVN+
Sbjct: 135 LALEGKQAEWASCFDRSQLGKVPIDCYTSGYGNQLELKYAEETALLNPPHTGVPWVVVND 194

Query: 178 QPLQEDFMNFANHVCKAYKGTGLPEACRSLPHNIPVNAEST--SSVCYTGEGKN 229
           QPL+ED+ NF  +VC+AY+G  +PEACRS   NI    E    + +CY  E KN
Sbjct: 195 QPLKEDYNNFVAYVCRAYRGGNVPEACRSFQLNINSTVEENPINPLCYVNEAKN 248

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357468573|ref|XP_003604571.1| Gamma-interferon-inducible lysosomal thiol reductase [Medicago truncatula] gi|355505626|gb|AES86768.1| Gamma-interferon-inducible lysosomal thiol reductase [Medicago truncatula]

 Score =  262 bits (669), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 122/210 (58%), Positives = 153/210 (72%), Gaps = 5/210 (2%)

Query: 25  SSENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGNSMMQPDGTFVCQH 84
           + + VT+S+YYE+LCPY ADFIVNHLVKLFQ  L SIVNL+M+PWGN+ +  +GTFVCQH
Sbjct: 41  NEKKVTMSIYYESLCPYSADFIVNHLVKLFQTNLISIVNLKMVPWGNARIATNGTFVCQH 100

Query: 85  GPGECLLNTIEACTISIYPDVVQHFSFIHCVERLALEKRQAEWINCFELTKLGRVPI-DC 143
           G  ECLLN+IEACTI  Y DV  HF FIHC+E L +E R  EW NC  +T LG +PI +C
Sbjct: 101 GNDECLLNSIEACTIKAYADVEHHFRFIHCLESLTIEGRYNEWFNCIRMTGLGALPILNC 160

Query: 144 YRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQPLQEDFMNFANHVCKAYKGTGLPEA 203
           Y++  G  +EQK+A ETAQL PPH FVPWVVVNN  LQED+ NF  ++CKAYKG+  P+A
Sbjct: 161 YKSRKGISIEQKFAKETAQLNPPHTFVPWVVVNNHALQEDYQNFVTYICKAYKGSLKPDA 220

Query: 204 CRSLPHNIPVNAESTSSV----CYTGEGKN 229
           CRS+      ++++ S+     CY  E KN
Sbjct: 221 CRSVSTRTYYDSDAKSNSFHHGCYVDEAKN 250

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297806055|ref|XP_002870911.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297316748|gb|EFH47170.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 114/222 (51%), Positives = 154/222 (69%), Gaps = 1/222 (0%)

Query: 1   MAS-TKLLTFFFPASLLLLSISPFGSSENVTVSVYYETLCPYCADFIVNHLVKLFQKGLN 59
           MAS  +LL     +  +   +    SS+ VT+S+YYE LCPYCA+FIVNHL K+F+ GL 
Sbjct: 1   MASYQRLLRLAITSFTIFFCLLSLSSSQKVTLSLYYEALCPYCAEFIVNHLPKIFETGLI 60

Query: 60  SIVNLRMIPWGNSMMQPDGTFVCQHGPGECLLNTIEACTISIYPDVVQHFSFIHCVERLA 119
           S ++L+++PWGN++++PDGT +CQHG  EC LN I AC I+ YPDV++HF +I+C ERL 
Sbjct: 61  SSIDLQLVPWGNAVIRPDGTILCQHGEAECALNAIHACAINAYPDVMKHFGYIYCTERLV 120

Query: 120 LEKRQAEWINCFELTKLGRVPIDCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQP 179
           LE +  +W +C E+  L R  +DCY NG G  LEQ+YA ET++L P HRFVPWVVVNNQP
Sbjct: 121 LENKLEKWADCLEMVGLSRAAVDCYINGYGNQLEQRYAEETSELYPAHRFVPWVVVNNQP 180

Query: 180 LQEDFMNFANHVCKAYKGTGLPEACRSLPHNIPVNAESTSSV 221
           LQE++ NF  +VC AY    +PE CR L  ++   +   SSV
Sbjct: 181 LQENYQNFVMYVCNAYGSNQVPEGCRILNSSLETLSRFNSSV 222

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	229
TAIR|locus:2149730	233	OSH1 "AT5G01580" [Arabidopsis	0.903	0.888	0.532	3e-62
TAIR|locus:2007407	265	AT1G07080 "AT1G07080" [Arabido	0.855	0.739	0.505	5.6e-52
TAIR|locus:2123286	231	AT4G12900 "AT4G12900" [Arabido	0.868	0.861	0.421	4.2e-40
TAIR|locus:2135813	232	AT4G12890 "AT4G12890" [Arabido	0.772	0.762	0.423	8.9e-38
TAIR|locus:2135783	229	AT4G12870 "AT4G12870" [Arabido	0.855	0.855	0.401	1.2e-35
TAIR|locus:2123251	243	GILT "AT4G12960" [Arabidopsis	0.877	0.827	0.372	5.8e-34
MGI|MGI:2137648	248	Ifi30 "interferon gamma induci	0.860	0.794	0.331	3.3e-24
RGD|1310758	248	Ifi30 "interferon gamma induci	0.825	0.762	0.325	1.4e-23
UNIPROTKB|B3SP85	246	IFI30 "Gamma-interferon-induci	0.829	0.772	0.325	6.9e-23
WB|WBGene00009514	277	F37H8.5 [Caenorhabditis elegan	0.737	0.610	0.331	1e-22

TAIR|locus:2149730 OSH1 "AT5G01580" [Arabidopsis thaliana (taxid:3702)]

 Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
 Identities = 114/214 (53%), Positives = 152/214 (71%)

Query:     8 TFFFPASLLLLSISPFGSSENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMI 67
             T FF     LLS+S   SS+ VT+S+YYE LCP+CA+FIVN L K+F+ GL S ++L+++
Sbjct:    13 TIFF----CLLSLS---SSQKVTLSLYYEALCPFCAEFIVNRLPKIFETGLISSIDLQLV 65

Query:    68 PWGNSMMQPDGTFVCQHGPGECLLNTIEACTISIYPDVVQHFSFIHCVERLALEKRQAEW 127
             PWGN+ ++PDGT +CQHG  EC LN I AC I+ YPDV++HF +I+C E+L LE +  +W
Sbjct:    66 PWGNAAIRPDGTILCQHGEAECALNAIHACAINAYPDVMKHFGYIYCTEQLVLENKLEKW 125

Query:   128 INCFELTKLGRVPIDCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQPLQEDFMNF 187
              +C E+  L R  +DCY NG G  LEQ+YA ET++L P HRFVPWVVVNN PLQE++ NF
Sbjct:   126 ADCLEMVGLSRAAVDCYINGYGNQLEQRYAEETSELYPAHRFVPWVVVNNLPLQENYQNF 185

Query:   188 ANHVCKAYKGTGLPEACRSLPHNIPVNAESTSSV 221
               +VC AY    +PEACR L  ++   + S SSV
Sbjct:   186 VMYVCNAYGSNQVPEACRILNSSVETLSRSNSSV 219

GO:0003824 "catalytic activity" evidence=ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2007407 AT1G07080 "AT1G07080" [Arabidopsis thaliana (taxid:3702)]

 Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
 Identities = 101/200 (50%), Positives = 132/200 (66%)

Query:     9 FFFP--ASLLLLSISPFGSSENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRM 66
             F FP  +S     +S   SS  V+V +YYE+LCPYC+ FIVNHL KLF+  L SIV+L +
Sbjct:    17 FLFPFASSSDYSGVSLPSSSPKVSVGLYYESLCPYCSSFIVNHLAKLFEDDLISIVDLHL 76

Query:    67 IPWGNSMMQPDG-TFVCQHGPGECLLNTIEACTISIYPDVVQHFSFIHCVERLALEKRQA 125
              PWGN+ ++ D  T VCQHG  EC L+T+EAC I  +P V  HF FI+CVE+L  E +  
Sbjct:    77 SPWGNTKLRSDNVTAVCQHGAFECFLDTVEACAIDAWPKVSDHFPFIYCVEKLVTEHKYD 136

Query:   126 EWINCFELTKLGRVPI-DCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQPLQEDF 184
             +W  C+E   L   P+ DC  +G G  L   YA ET  L+PPH++VPWVVV+ QPL ED+
Sbjct:   137 KWETCYEKLNLNSKPVADCLSSGHGNELALHYAAETNALQPPHKYVPWVVVDGQPLYEDY 196

Query:   185 MNFANHVCKAYKGTGLPEAC 204
              NF +++CKAYKG  +P AC
Sbjct:   197 ENFISYICKAYKGNKVPGAC 216

GO:0003824 "catalytic activity" evidence=ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:2123286 AT4G12900 "AT4G12900" [Arabidopsis thaliana (taxid:3702)]

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 89/211 (42%), Positives = 125/211 (59%)

Query:     1 MASTKLLTFFFPASLLLLSISPF----GSSENVTVSVYYETLCPYCADFIVNHLVKLFQK 56
             +AS+  L FF  A LLL + S      G S+ V +++YYE+LCP C +FIV+HL K+F  
Sbjct:     7 LASSTKLVFF--ACLLLFTFSSHNLVAGESDKVKLNLYYESLCPSCQNFIVHHLGKIFNT 64

Query:    57 GLNSIVNLRMIPWGNSMMQPDGTFVCQHGPGECLLNTIEACTISIYPDVVQHFSFIHCVE 116
              L++I +L++IP+GN+ +  D T  CQHG  EC LN +EAC I  +P+   H+ FI CVE
Sbjct:    65 DLHTITDLKLIPFGNAHVSDDLTVTCQHGEEECKLNALEACAIRTWPNQRLHYKFIRCVE 124

Query:   117 RLALEKRQAEWINCFELTKLGRVPIDCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVN 176
                       W +C +     +   DCY   L K L   YA +T  LKP H++VPW+ +N
Sbjct:   125 T-----NTNAWESCVKKYGGEKAINDCYNGDLSKELILGYANQTLSLKPEHKYVPWMTLN 179

Query:   177 NQPLQEDFMNFANHVCKAYKG-TGLPEACRS 206
              +PL E+  +F + VCKAYKG   LP+ C S
Sbjct:   180 GEPLYENIGDFVDLVCKAYKGKAALPKLCYS 210

GO:0003824 "catalytic activity" evidence=ISS

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:2135813 AT4G12890 "AT4G12890" [Arabidopsis thaliana (taxid:3702)]

 Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
 Identities = 77/182 (42%), Positives = 108/182 (59%)

Query:    25 SSENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGNSMMQPDGTFVCQH 84
             +S  V +++YYE+LCPYC +FIV+ L K+F   L  I +L+++P+GN+ +  + T  CQH
Sbjct:    35 NSNKVKINLYYESLCPYCQNFIVDDLGKIFDSDLLKITDLKLVPFGNAHISNNLTITCQH 94

Query:    85 GPGECLLNTIEACTISIYPDVVQHFSFIHCVERLALEKRQAEWINCFELTKLGRVPIDCY 144
             G  EC LN +EAC I   PD    + FI CVE     K   EW +C + +   +   DCY
Sbjct:    95 GEEECKLNALEACGIRTLPDPKLQYKFIRCVE-----KDTNEWESCVKKSGREKAINDCY 149

Query:   145 RNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQPLQEDFMNFANHVCKAYKGTGLPEAC 204
                L + L   YA  T+ LKP H +VPWV +N +PL +++ N    VCKAYKG  LP+ C
Sbjct:   150 NGDLSQKLILGYAKLTSSLKPKHEYVPWVTLNGKPLYDNYHNLVAQVCKAYKGKDLPKLC 209

Query:   205 RS 206
              S
Sbjct:   210 SS 211

GO:0003824 "catalytic activity" evidence=ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2135783 AT4G12870 "AT4G12870" [Arabidopsis thaliana (taxid:3702)]

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 84/209 (40%), Positives = 120/209 (57%)

Query:     3 STKLLTFFFPASLLLLSISP---FGSSENVTVSVYYETLCPYCADFIVNHLVKLFQKGLN 59
             STKL+ FF  A  +L + S     G S+ V +++YYE+LCP C  FIV+ LVK+F   L+
Sbjct:     7 STKLV-FF--ACFVLFTFSHKLVTGESDKVELNLYYESLCPGCQSFIVDELVKVFDSDLD 63

Query:    60 SIVNLRMIPWGNSMMQPDGTFVCQHGPGECLLNTIEACTISIYPDVVQHFSFIHCVERLA 119
             +I +++++P+G + +  + T +CQHG  EC LN +EAC I+  P+    + FI CVE   
Sbjct:    64 TITDVKLVPFGYAKVSNNLTVICQHGEEECKLNALEACVINTLPNPKSQYKFIRCVEN-- 121

Query:   120 LEKRQAEW-INCFELTKLGRVPIDCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQ 178
                    W  +C +     +   DCY + L K L   YA +T+ LKP H FVPWV +N++
Sbjct:   122 ---NTDNWESSCLKGYGNEKAINDCYNSDLSKKLILGYAKQTSSLKPKHEFVPWVTINSK 178

Query:   179 PLQEDFMNFANHVCKAYKG-TGLPEACRS 206
             PL     +    VCKAYKG T LP  C S
Sbjct:   179 PLYTKLDDLVGQVCKAYKGKTPLPIDCSS 207

GO:0003824 "catalytic activity" evidence=ISS

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:2123251 GILT "AT4G12960" [Arabidopsis thaliana (taxid:3702)]

 Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
 Identities = 83/223 (37%), Positives = 118/223 (52%)

Query:     1 MASTKLLTFFFPASLLLLSISP---FGSSENVTVSVYYETLCPYCADFIVNHLVKLFQKG 57
             M S+ L    F   LLLL+ +     G S  V +++YYE+LCP C +FIV+ L K+F   
Sbjct:     1 MVSSSLTKLVFFGCLLLLTFTDNLVAGKSGKVKLNLYYESLCPGCQEFIVDDLGKIFDYD 60

Query:    58 LNSIVNLRMIPWGNSMMQPDGTFVCQHGPGECLLNTIEACTISIYPDVVQ---------- 107
             L +I +L++ P+GN+ +  + T  CQHG  EC LN +EAC +  +PD             
Sbjct:    61 LYTITDLKLFPFGNAELSDNLTVTCQHGEEECKLNALEACALRTWPDQFDKCDGYGTQKS 120

Query:   108 HFSFIHCVERLALEKRQAEWINCFELTKLGRVPIDCYRNGLGKLLEQKYATETAQLKPPH 167
              +SFI CVE          W +C + +   +   DCY   L + L   YAT+T  LKPPH
Sbjct:   121 QYSFIRCVE-----SDTKGWESCVKNSGREKAINDCYNGDLSRKLILGYATKTKNLKPPH 175

Query:   168 RFVPWVVVNNQPLQEDFMN---FANHVCKAYKG-TGLPEACRS 206
              +VPWV +N +PL +   +       +C AYKG T LP+ C S
Sbjct:   176 EYVPWVTLNGKPLDDSVQSTDDLVAQICNAYKGKTTLPKVCNS 218

GO:0003824 "catalytic activity" evidence=ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

MGI|MGI:2137648 Ifi30 "interferon gamma inducible protein 30" [Mus musculus (taxid:10090)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 70/211 (33%), Positives = 105/211 (49%)

Query:    17 LLSISPFGSSENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGNSMMQP 76
             LL   P   S  V VS+YYE+LC  C  F+V  L   +   +  I+N+ ++P+GN+  + 
Sbjct:    47 LLGPRPLPPSPPVRVSLYYESLCGACRYFLVRDLFPTWLMVME-IMNITLVPYGNAQERN 105

Query:    77 -DGT--FVCQHGPGECLLNTIEACTISIYPDVVQHFSFIHCVERLA-LEKRQAEWINCFE 132
               GT  F CQHG  EC LN +EAC +          + + C+E +  +EK+    +  + 
Sbjct:   106 VSGTWEFTCQHGELECRLNMVEACLLDKLEKEAAFLTIV-CMEEMDDMEKKLGPCLQVYA 164

Query:   133 LTKLGRVPIDCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQPLQEDFMNFANHVC 192
                     ++C     G  L  + A  T  L PPH +VPWV+VN +PL+ D     + VC
Sbjct:   165 PEVSPESIMECATGKRGTQLMHENAQLTDALHPPHEYVPWVLVNEKPLK-DPSELLSIVC 223

Query:   193 KAYKGTGLPEACRSLPHNIPVNAESTSSVCY 223
             + Y+GT  P+ C S+       A+S   VCY
Sbjct:   224 QLYQGTEKPDICSSI-------ADSPRKVCY 247

GO:0005576 "extracellular region" evidence=IEA

GO:0005764 "lysosome" evidence=ISO;IDA

GO:0015036 "disulfide oxidoreductase activity" evidence=TAS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016667 "oxidoreductase activity, acting on a sulfur group of donors" evidence=ISO

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=IMP

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=IMP

GO:0048147 "negative regulation of fibroblast proliferation" evidence=IMP

GO:0050821 "protein stabilization" evidence=IMP

GO:0055114 "oxidation-reduction process" evidence=ISO;TAS

RGD|1310758 Ifi30 "interferon gamma inducible protein 30" [Rattus norvegicus (taxid:10116)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 66/203 (32%), Positives = 104/203 (51%)

Query:    25 SSENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGNSMMQP-DGT--FV 81
             S+  V VS+YYE+LC  C  F+V +L   +   +  I+N+ ++P+GN+  +   GT  F 
Sbjct:    55 SAPPVNVSLYYESLCGACRYFLVRNLFPTWLMVME-IMNITLVPYGNAQERNVSGTWEFT 113

Query:    82 CQHGPGECLLNTIEACTISIYPDVVQHFSFIHCVERLA-LEKRQAEWINCFELTKLGRVP 140
             CQHG  EC LN +EAC +          + + C+E +  +EK+    +  +         
Sbjct:   114 CQHGELECKLNKVEACLLDKLEKEAAFLTIV-CMEEMEDMEKKLGPCLQLYVPEVSPESI 172

Query:   141 IDCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQPLQEDFMNFANHVCKAYKGTGL 200
             ++C     G  L  + A  T  L+PPH +VPWV+VN +PL  D     + VC+ Y+GT  
Sbjct:   173 MECATGKRGTELMHENAQLTDALQPPHEYVPWVLVNEKPLT-DPSQLLSSVCELYQGTEK 231

Query:   201 PEACRSLPHNIPVNAESTSSVCY 223
             P+ C S+       A++   VCY
Sbjct:   232 PDICSSM-------ADAPREVCY 247

GO:0005576 "extracellular region" evidence=IEA

GO:0005764 "lysosome" evidence=ISO;ISS

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0016667 "oxidoreductase activity, acting on a sulfur group of donors" evidence=ISO;ISS

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=IEA;ISO

GO:0030054 "cell junction" evidence=IEA;ISO

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=ISO;ISS

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0048147 "negative regulation of fibroblast proliferation" evidence=IEA;ISO

GO:0050821 "protein stabilization" evidence=IEA;ISO

UNIPROTKB|B3SP85 IFI30 "Gamma-interferon-inducible-lysosomal thiol reductase" [Sus scrofa (taxid:9823)]

 Score = 242 (90.2 bits), Expect = 6.9e-23, Sum P(2) = 6.9e-23
 Identities = 68/209 (32%), Positives = 102/209 (48%)

Query:    22 PFGSSEN--VTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGNSMMQP-DG 78
             P G S+   V V++YYE+LC  C  F+V  L   +   +  I+N+ ++P+GN+  +   G
Sbjct:    49 PVGKSDPPPVNVNLYYESLCNGCRYFLVRELFPTWLM-VWEILNVTLVPYGNAQERNVSG 107

Query:    79 T--FVCQHGPGECLLNTIEACTISIYPDVVQHFSFIHCVERLA-LEKRQAEWINCFELTK 135
                F CQHG  EC +N +EAC +      +   + + C+E L  +EK     +  +   K
Sbjct:   108 RWEFTCQHGEQECKMNKVEACLLDKLEKNMAFLTIV-CIEELDDMEKNLEPCLQIYA-PK 165

Query:   136 LGRVPI-DCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQPLQEDFMNFANHVCKA 194
             +    I +C     G  L    A  T  LKPPH +VPWVVVN +P+ E        VC+ 
Sbjct:   166 VSPDSIMECAMGDRGMQLLHINAQLTDALKPPHEYVPWVVVNGKPMTEKDQ-LLRLVCQL 224

Query:   195 YKGTGLPEACRSLPHNIPVNAESTSSVCY 223
             Y+G   P+ C+ L       A S   VC+
Sbjct:   225 YEGEK-PDVCQIL-------ASSHKEVCF 245

GO:0005764 "lysosome" evidence=ISS

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=ISS

GO:0016667 "oxidoreductase activity, acting on a sulfur group of donors" evidence=ISS

GO:0005576 "extracellular region" evidence=IEA

GO:0050821 "protein stabilization" evidence=IEA

GO:0048147 "negative regulation of fibroblast proliferation" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

WB|WBGene00009514 F37H8.5 [Caenorhabditis elegans (taxid:6239)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 61/184 (33%), Positives = 95/184 (51%)

Query:    26 SENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGNSMMQPDGTFVCQHG 85
             ++ + ++V  E LCP C +F+   L  +  K   + VN+ ++P+GN+ +  DGT  CQHG
Sbjct:    73 NQKINITVLIEALCPDCQNFLTKQLYPIVFKNFANYVNIELVPFGNAKVLEDGTIKCQHG 132

Query:    86 PGECLLNTIEACTISIYPDVVQHFSFIHCVERLALEKRQ--AEWIN-CFELTKLG----R 138
               EC +N  E C I    D       + C+E  +L+K+   A+ +  CFE  ++G    R
Sbjct:   133 EEECSINKFEGCFIDSMQDQ-SPLPTLSCIEE-SLQKKVEFADAVQQCFEKLQIGGDIQR 190

Query:   139 VPIDCYRNGLGKLLEQKYATETAQLKPP-HRFVPWVVVNNQPLQEDFMNFANHV----CK 193
             +   C  + LG  L+ K A  TA + P  H+FVPWV++N   L   F  F N +    C+
Sbjct:   191 LTQSCLVSKLGADLQNKAAAATANVWPEQHKFVPWVIINGVSLTS-FQGFQNQLPTLLCE 249

Query:   194 AYKG 197
              Y G
Sbjct:   250 WYSG 253

GO:0016021 "integral to membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q499T2	GILT_RAT	1, ., 8, ., -, ., -	0.3181	0.8733	0.8064	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_XVI3800 SubName- Full=Putative uncharacterized protein; (242 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	229
pfam03227	109	pfam03227, GILT, Gamma interferon inducible lysoso	8e-24

>gnl|CDD|217437 pfam03227, GILT, Gamma interferon inducible lysosomal thiol reductase (GILT)

 Score = 91.2 bits (227), Expect = 8e-24
 Identities = 36/91 (39%), Positives = 52/91 (57%), Gaps = 2/91 (2%)

Query: 29  VTVSVYYETLCPYCADFIVNHLVK-LFQKGLNSIVNLRMIPWGNSMMQPDGTFV-CQHGP 86
           V +++YYE+LCP C  FI N L    F   L  I +L+++P+G +    DG+   CQHGP
Sbjct: 1   VNITLYYESLCPDCQKFIRNQLYPAWFDLDLLDITDLKLVPFGKARCVDDGSVCTCQHGP 60

Query: 87  GECLLNTIEACTISIYPDVVQHFSFIHCVER 117
            EC LN ++AC I   P+      FI C++ 
Sbjct: 61  EECKLNALQACVIETLPNQKLQLPFIRCMQG 91

This family includes the two characterized human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences. It also contains several other eukaryotic putative proteins with similarity to GILT. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction. Length = 109

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	229
KOG3160	220	consensus Gamma-interferon inducible lysosomal thi	100.0
PF03227	108	GILT: Gamma interferon inducible lysosomal thiol r	100.0
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	98.48
cd03019	178	DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m	98.24
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	98.04
cd03024	201	DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a D	97.2
PRK10954	207	periplasmic protein disulfide isomerase I; Provisi	96.97
PF13743	176	Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.	96.68
cd03025	193	DsbA_FrnE_like DsbA family, FrnE-like subfamily; c	96.33
PF01323	193	DSBA: DSBA-like thioredoxin domain; InterPro: IPR0	96.04
cd03022	192	DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-car	94.22
COG2761	225	FrnE Predicted dithiol-disulfide isomerase involve	89.72
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	87.63
COG1651	244	DsbG Protein-disulfide isomerase [Posttranslationa	86.62
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	86.0
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	85.73
PF07172	95	GRP: Glycine rich protein family; InterPro: IPR010	81.57
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	81.17

>KOG3160 consensus Gamma-interferon inducible lysosomal thiol reductase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3e-54  Score=371.69  Aligned_cols=178  Identities=42%  Similarity=0.852  Sum_probs=163.3

Q ss_pred             CCCceEEEEEEEeCChhhHHHHHHhHHHHHHhcCCCceeEEEEEeeeceecCC-CceeeeCCchhhccchhhhhhhhhcC
Q 042427           25 SSENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGNSMMQPD-GTFVCQHGPGECLLNTIEACTISIYP  103 (229)
Q Consensus        25 ~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a~~~~~-~~f~CQHG~~EC~gN~~~aCai~~~~  103 (229)
                      +.+||+|+||||||||||++||++||.|+|+.++.+++||++||||||+..++ ++|+||||+.||.+|++|||+|++++
T Consensus        37 ~~~~v~ItlyyEaLCPdc~~Fi~~qL~p~~~~~~~~~idl~lvPfGna~~~~~~~~~~CqHG~~EC~lN~LqaCvI~~l~  116 (220)
T KOG3160|consen   37 QAPKVNITLYYEALCPDCSKFIRNQLYPFFDNLLPSILDLTLVPFGNAQCRNDGGTFTCQHGEEECKLNKLQACVIDTLP  116 (220)
T ss_pred             cCCeeEEEEEEEecCccHHHHHHHHHHHHHhhcccceeEEEEEccCCceeecCceEEEecCCHHHHhhhHHHHHHHHhhh
Confidence            56699999999999999999999999999996578999999999999998877 79999999999999999999999999


Q ss_pred             CccchhhhhhhhhcchhhhhhHHHHHHHhhcCCCCCcc-ccccCcchhHHHHHHHHHhhhcCCCCeeeeEEEECCeechh
Q 042427          104 DVVQHFSFIHCVERLALEKRQAEWINCFELTKLGRVPI-DCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQPLQE  182 (229)
Q Consensus       104 ~~~~~~~fi~C~~~~~~~~~~~~~~~Ca~~~gl~~~~I-~C~~~~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~~~  182 (229)
                      +...+++||.||++.   ...+.|.+|+++.++++..| +|++|++|.+|+.++|++|..+.|+|.|||||+|||++.++
T Consensus       117 ~~~~~l~~i~C~~~~---~~~~~~~~C~~~~~~~~~~i~~Ca~s~~g~~L~~~~~~~T~~~~p~~~~VPwi~vNg~~~~~  193 (220)
T KOG3160|consen  117 DQSDQLPFIRCIQGK---QKLSEAEDCLEKYGLNEKKIRECANSRLGAKLLLKYAQETAALAPPHPWVPWILVNGQPLQD  193 (220)
T ss_pred             chHhhhceehhhhcc---cchhHHHHHHhhcCCCHHHHHHHhcCchHHHHHHHHHHhhcccCCCCCCcCeEEECCcchHH
Confidence            999999999999982   23456778999999988889 99999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHhhcCCC-CCCCCC
Q 042427          183 DFMNFANHVCKAYKGTG-LPEACR  205 (229)
Q Consensus       183 ~~~nl~~~VC~~y~g~~-~P~~C~  205 (229)
                      +..||...+|.+|+++. +|..|.
T Consensus       194 ~~~~l~~~~C~~~~~~~~~~~~~~  217 (220)
T KOG3160|consen  194 AEQDLVTLLCEAYKGKKQKPLKCQ  217 (220)
T ss_pred             HHHHHHHHHHHHHhhccccCcccc
Confidence            98899999999999842 455443

>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]

Probab=100.00  E-value=3.3e-38  Score=245.15  Aligned_cols=105  Identities=38%  Similarity=0.797  Sum_probs=92.1

Q ss_pred             eEEEEEEEeCChhhHHHHHHhHHHHHH-hcCCCceeEEEEEeeeceecCCCc-eeeeCCchhhccchhhhhhhhhcCCcc
Q 042427           29 VTVSVYYETLCPYCADFIVNHLVKLFQ-KGLNSIVNLRMIPWGNSMMQPDGT-FVCQHGPGECLLNTIEACTISIYPDVV  106 (229)
Q Consensus        29 V~V~vyyESlCPds~~Fi~~qL~p~~~-~~l~~~vdl~lvP~G~a~~~~~~~-f~CQHG~~EC~gN~~~aCai~~~~~~~  106 (229)
                      |+|+|||||+||||++||++||.|+|. .++.++|||+|||||||+...+++ |+|||||.||+||++|+|+++++++..
T Consensus         1 V~v~vyyESlCPd~~~fi~~~L~p~~~~~~~~~~~~l~lvP~G~a~~~~~~~~~~CqHG~~EC~gN~~q~C~l~~~~~~~   80 (108)
T PF03227_consen    1 VNVEVYYESLCPDCRRFITNQLFPVWTYEKLSDIMNLTLVPFGNAKVSSSGNEFTCQHGPDECYGNKLQACALKHLPDTN   80 (108)
T ss_pred             CEEEEEEEecCHhHHHHHHHHHHHHHHHhhccceEEEEEEEEeccEEecCCceeecCCcHHHHHcCHHHHhHHHhcCChh
Confidence            789999999999999999999999773 259999999999999999876554 999999999999999999999999988


Q ss_pred             chhhhhhhhhcchhhhhhHHHHHHHhhcCC
Q 042427          107 QHFSFIHCVERLALEKRQAEWINCFELTKL  136 (229)
Q Consensus       107 ~~~~fi~C~~~~~~~~~~~~~~~Ca~~~gl  136 (229)
                      .+|+||+||++...  ....+. |+++.+.
T Consensus        81 ~~~~~i~Cm~~~~~--~~~~~~-Ca~~~~~  107 (108)
T PF03227_consen   81 AALPFIACMESSQD--FPKAIK-CAKKYGI  107 (108)
T ss_pred             hhcCEEEEEcCCCC--Cchhhh-hHHhcCC
Confidence            89999999998642  223343 9999875

It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=98.48  E-value=2.2e-06  Score=67.66  Aligned_cols=137  Identities=11%  Similarity=0.123  Sum_probs=86.8

Q ss_pred             CCCceEEEEEEEeCChhhHHHHHHhHHHHHHhcCCCceeEEEEEeeeceecCCCceeeeCCchhhccchhhhhhhhhcCC
Q 042427           25 SSENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGNSMMQPDGTFVCQHGPGECLLNTIEACTISIYPD  104 (229)
Q Consensus        25 ~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a~~~~~~~f~CQHG~~EC~gN~~~aCai~~~~~  104 (229)
                      .+.++.|.+|+.-.||.|++|. ..|.+.+.+ ..+ +++.++||--..  ...          -..-..-.|+..  .+
T Consensus         3 ~~a~~~i~~f~D~~Cp~C~~~~-~~l~~~~~~-~~~-~~~~~~~~p~~~--~~~----------~~~~~~~~~~~~--~~   65 (154)
T cd03023           3 PNGDVTIVEFFDYNCGYCKKLA-PELEKLLKE-DPD-VRVVFKEFPILG--ESS----------VLAARVALAVWK--NG   65 (154)
T ss_pred             CCCCEEEEEEECCCChhHHHhh-HHHHHHHHH-CCC-ceEEEEeCCccC--cch----------HHHHHHHHHHHH--hC
Confidence            3568999999999999999995 466666653 444 667766663211  110          001111112222  13


Q ss_pred             ccchhhhhhhhhcchhhhhhHHHHHHHhhcCCCCCcc-ccccCcchhHHHHHHHHHhhhcCCCCeeeeEEEECCeec
Q 042427          105 VVQHFSFIHCVERLALEKRQAEWINCFELTKLGRVPI-DCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQPL  180 (229)
Q Consensus       105 ~~~~~~fi~C~~~~~~~~~~~~~~~Ca~~~gl~~~~I-~C~~~~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~  180 (229)
                      ....++|..=+...............++..|++.+.+ +|.+++...+.+.+..+....+  .+..+||++|||+..
T Consensus        66 ~~~~~~~~~~lf~~~~~~~~~~l~~~a~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--gi~gtPt~~v~g~~~  140 (154)
T cd03023          66 PGKYLEFHNALMATRGRLNEESLLRIAKKAGLDEAKLKKDMDDPEIEATIDKNRQLARAL--GITGTPAFIIGDTVI  140 (154)
T ss_pred             hhHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHhhChHHHHHHHHHHHHHHHc--CCCcCCeEEECCEEe
Confidence            3445555433322111111234557789999999999 9999988888888777777765  578999999999865

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold

Probab=98.24  E-value=6.9e-06  Score=67.00  Aligned_cols=135  Identities=17%  Similarity=0.091  Sum_probs=88.2

Q ss_pred             CCceEEEEEEEeCChhhHHHHHHhHHHHHHhcCCCceeEEEEEeeeceecCCCceeeeCCchhhccchhhhhhhhhcCCc
Q 042427           26 SENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGNSMMQPDGTFVCQHGPGECLLNTIEACTISIYPDV  105 (229)
Q Consensus        26 ~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a~~~~~~~f~CQHG~~EC~gN~~~aCai~~~~~~  105 (229)
                      +.++.|..|+.-.||.|++|- ..+.++..+ ..+.+.++++|+......  +.          ...+..+.+.. .   
T Consensus        14 ~~~~~i~~f~D~~Cp~C~~~~-~~~~~~~~~-~~~~v~~~~~~~~~~~~~--~~----------~aa~a~~aa~~-~---   75 (178)
T cd03019          14 SGKPEVIEFFSYGCPHCYNFE-PILEAWVKK-LPKDVKFEKVPVVFGGGE--GE----------PLARAFYAAEA-L---   75 (178)
T ss_pred             CCCcEEEEEECCCCcchhhhh-HHHHHHHHh-CCCCceEEEcCCcccccc--ch----------HHHHHHHHHHH-c---
Confidence            679999999999999999995 567888875 677889999997643211  00          11111111211 1   


Q ss_pred             cchhhhhhhhhcc----h-hhhhhHHHHHHHhhcCCCCCcc-ccccCcchhHHHHHHHHHhhhcCCCCeeeeEEEECCee
Q 042427          106 VQHFSFIHCVERL----A-LEKRQAEWINCFELTKLGRVPI-DCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQP  179 (229)
Q Consensus       106 ~~~~~fi~C~~~~----~-~~~~~~~~~~Ca~~~gl~~~~I-~C~~~~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~  179 (229)
                      ...+.|..=+...    . .....+.+.+.+++.|++.+.+ .|.++++-++.+.+..+....+  .+..+||++|||+.
T Consensus        76 ~~~~~~~~~lf~~~~~~~~~~~~~~~l~~~a~~~Gl~~~~~~~~~~s~~~~~~i~~~~~~~~~~--gi~gTPt~iInG~~  153 (178)
T cd03019          76 GLEDKLHAALFEAIHEKRKRLLDPDDIRKIFLSQGVDKKKFDAAYNSFSVKALVAKAEKLAKKY--KITGVPAFVVNGKY  153 (178)
T ss_pred             CcHhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCHHHHHHHHhCHHHHHHHHHHHHHHHHc--CCCCCCeEEECCEE
Confidence            1122322211111    0 0111345778999999999888 9999877667777776766654  57999999999986


Q ss_pred             c
Q 042427          180 L  180 (229)
Q Consensus       180 ~  180 (229)
                      .
T Consensus       154 ~  154 (178)
T cd03019         154 V  154 (178)
T ss_pred             E
Confidence            4

It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=98.04  E-value=2.3e-05  Score=62.78  Aligned_cols=146  Identities=14%  Similarity=0.145  Sum_probs=89.8

Q ss_pred             CCCceEEEEEEEeCChhhHHHHHHhHHHHHHhcC--CCceeEEEEEeeeceecCCCceeeeCCchhhccchhhhhhhhhc
Q 042427           25 SSENVTVSVYYETLCPYCADFIVNHLVKLFQKGL--NSIVNLRMIPWGNSMMQPDGTFVCQHGPGECLLNTIEACTISIY  102 (229)
Q Consensus        25 ~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l--~~~vdl~lvP~G~a~~~~~~~f~CQHG~~EC~gN~~~aCai~~~  102 (229)
                      .+.++.|.+|..-.||.|++|.. .+.+++++ +  .+.+.+.++|+-...            .....+-.+..|+.+. 
T Consensus        10 ~~a~~~v~~f~d~~Cp~C~~~~~-~~~~~~~~-~i~~~~v~~~~~~~~~~~------------~~~~~a~~~~~~~~~~-   74 (162)
T PF13462_consen   10 PDAPITVTEFFDFQCPHCAKFHE-ELEKLLKK-YIDPGKVKFVFRPVPLDK------------HSSLRAAMAAECVADQ-   74 (162)
T ss_dssp             TTTSEEEEEEE-TTSHHHHHHHH-HHHHHHHH-HTTTTTEEEEEEESSSSH------------HHHHHHHHHHHHHHHH-
T ss_pred             CCCCeEEEEEECCCCHhHHHHHH-HHhhhhhh-ccCCCceEEEEEEccccc------------hhHHHHHHHHHHHHHH-
Confidence            56799999999999999999965 45577775 5  578899888872221            1145556666666654 


Q ss_pred             CCccchhhhhhhhhcchhhhhhHHHHHHHhhcCCCCCcc-ccccCcchhHHHHHHHHHhhhcCCCCeeeeEEEECCeech
Q 042427          103 PDVVQHFSFIHCVERLALEKRQAEWINCFELTKLGRVPI-DCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQPLQ  181 (229)
Q Consensus       103 ~~~~~~~~fi~C~~~~~~~~~~~~~~~Ca~~~gl~~~~I-~C~~~~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~~  181 (229)
                       + +.++.+..-+..........  +.=+.+.+.+.+.+ +|+.+..-...+....+.+...  .++.+|+++|||+.+.
T Consensus        75 -~-~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~tPt~~inG~~~~  148 (162)
T PF13462_consen   75 -G-KYFWFFHELLFSQQENFENK--KDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQL--GITGTPTFFINGKYVV  148 (162)
T ss_dssp             -T-HHHHHHHHHHHHHCHSTSSH--HHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHH--T-SSSSEEEETTCEEE
T ss_pred             -h-HHHHHHHHHHHHhhhccchh--HHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHc--CCccccEEEECCEEeC
Confidence             2 34455554444322111111  11112334445667 9988876666666555555554  5789999999999864


Q ss_pred             h--hhhhHHHHH
Q 042427          182 E--DFMNFANHV  191 (229)
Q Consensus       182 ~--~~~nl~~~V  191 (229)
                      .  ..++|...|
T Consensus       149 ~~~~~~~l~~~I  160 (162)
T PF13462_consen  149 GPYTIEELKELI  160 (162)
T ss_dssp             TTTSHHHHHHHH
T ss_pred             CCCCHHHHHHHH
Confidence            2  355665554

...

>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif

Probab=97.20  E-value=0.0053  Score=51.08  Aligned_cols=146  Identities=16%  Similarity=0.195  Sum_probs=92.2

Q ss_pred             EEEEEEeCChhhHHHHHHhHHHHHHhcCC--CceeEEEEEeeeceec-CCC----ceee-eCCc----------------
Q 042427           31 VSVYYETLCPYCADFIVNHLVKLFQKGLN--SIVNLRMIPWGNSMMQ-PDG----TFVC-QHGP----------------   86 (229)
Q Consensus        31 V~vyyESlCPds~~Fi~~qL~p~~~~~l~--~~vdl~lvP~G~a~~~-~~~----~f~C-QHG~----------------   86 (229)
                      |++|+.-.||.|--.. .+|..+.+. +.  +-++|++.||+-.... ..+    .... +||.                
T Consensus         1 I~~~~D~~cP~cyl~~-~~l~~~~~~-~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~a~   78 (201)
T cd03024           1 IDIWSDVVCPWCYIGK-RRLEKALAE-LGDEVDVEIEWRPFELNPDMPPEGEDRREYLARKYGSTAEQAAAMRRVEAAAA   78 (201)
T ss_pred             CeEEecCcCccHHHHH-HHHHHHHHh-CCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence            5799999999999774 577777764 53  2589999999644321 111    0000 1110                


Q ss_pred             ---------hhhccchhhhhhhhhc-CCccchhhhhhhhhcchhh-----hhhHHHHHHHhhcCCCCCcc-ccccCcchh
Q 042427           87 ---------GECLLNTIEACTISIY-PDVVQHFSFIHCVERLALE-----KRQAEWINCFELTKLGRVPI-DCYRNGLGK  150 (229)
Q Consensus        87 ---------~EC~gN~~~aCai~~~-~~~~~~~~fi~C~~~~~~~-----~~~~~~~~Ca~~~gl~~~~I-~C~~~~~G~  150 (229)
                               ..-..|...+|.+-.. .......+|..=+......     +........++..|+|.+.+ ++.+++..+
T Consensus        79 ~~gi~~~~~~~~~~~s~~a~~~~~~a~~~~~~~~~~~~lf~a~~~~~~~i~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~  158 (201)
T cd03024          79 AEGLEFDFDRVRPPNTFDAHRLIHLAKEQGKQDALVEALFRAYFTEGKDIGDRDVLVDLAEEAGLDAAEARAVLASDEYA  158 (201)
T ss_pred             HcCCcccCCCCccCCcHHHHHHHHHHhccCcHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHcCCCHHHHHHHhcCcccc
Confidence                     0111355555543322 1233556666655432111     12334667899999999888 999998888


Q ss_pred             HHHHHHHHHhhhcCCCCeeeeEEEECCeec
Q 042427          151 LLEQKYATETAQLKPPHRFVPWVVVNNQPL  180 (229)
Q Consensus       151 ~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~  180 (229)
                      +.+.+..+++..+  .+..+||++|||+..
T Consensus       159 ~~~~~~~~~a~~~--gv~G~Pt~vv~g~~~  186 (201)
T cd03024         159 DEVRADEARARQL--GISGVPFFVFNGKYA  186 (201)
T ss_pred             hHHHHHHHHHHHC--CCCcCCEEEECCeEe
Confidence            8888777777654  579999999999753

It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.

>PRK10954 periplasmic protein disulfide isomerase I; Provisional

Probab=96.97  E-value=0.0046  Score=52.68  Aligned_cols=134  Identities=14%  Similarity=0.114  Sum_probs=78.6

Q ss_pred             CCceEEEEEEEeCChhhHHHHHHhH--HHHHHhcCCCceeEEEEEeeeceecCC------CceeeeCCchhhccchhhhh
Q 042427           26 SENVTVSVYYETLCPYCADFIVNHL--VKLFQKGLNSIVNLRMIPWGNSMMQPD------GTFVCQHGPGECLLNTIEAC   97 (229)
Q Consensus        26 ~~kV~V~vyyESlCPds~~Fi~~qL--~p~~~~~l~~~vdl~lvP~G~a~~~~~------~~f~CQHG~~EC~gN~~~aC   97 (229)
                      ..++.|.-|+-=.||.|.+|-. .|  .+.|.+.+.+-+.+..+|+--......      ....|...+     ++.+  
T Consensus        36 ~~~~~VvEffdy~CphC~~~~~-~l~~~~~~~~~~~~~v~~~~~~~~f~~~~~~~~~~a~~~a~~~~~~-----~k~~--  107 (207)
T PRK10954         36 AGEPQVLEFFSFYCPHCYQFEE-VYHVSDNVKKKLPEGTKMTKYHVEFLGPLGKELTQAWAVAMALGVE-----DKVT--  107 (207)
T ss_pred             CCCCeEEEEeCCCCccHHHhcc-cccchHHHHHhCCCCCeEEEecccccchhhHHHHHHHHHHHHhCcH-----HHHH--
Confidence            3577899999999999999943 33  366665566666666655421110000      001111100     1110  


Q ss_pred             hhhhcCCccchhhhhhhhhcchhhhhhHHHHHHHhhcCCCCCcc-ccccCcchhHHHHHHHHHhhhcCCCCeeeeEEEEC
Q 042427           98 TISIYPDVVQHFSFIHCVERLALEKRQAEWINCFELTKLGRVPI-DCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVN  176 (229)
Q Consensus        98 ai~~~~~~~~~~~fi~C~~~~~~~~~~~~~~~Ca~~~gl~~~~I-~C~~~~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iN  176 (229)
                              ...++.+  +..... ........-+...|+|.+.+ +|.++..-...+.+..+.+..+  .++-+|+++||
T Consensus       108 --------~~lf~~i--~~~~~~-~~~~~L~~~a~~~Gld~~~f~~~l~s~~~~~~v~~~~~~a~~~--gI~gtPtfiIn  174 (207)
T PRK10954        108 --------PPLFEGV--QKTQTI-QSAADIRDVFIKAGVKGEDYDAAWNSFVVKSLVAQQEKAAADL--QLRGVPAMFVN  174 (207)
T ss_pred             --------HHHHHHH--HccCCC-CCHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHc--CCCCCCEEEEC
Confidence                    0011111  111111 12234556788899999999 9999877777777666666654  57999999999


Q ss_pred             Ceec
Q 042427          177 NQPL  180 (229)
Q Consensus       177 G~~~  180 (229)
                      |++.
T Consensus       175 Gky~  178 (207)
T PRK10954        175 GKYM  178 (207)
T ss_pred             CEEE
Confidence            9974

>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C

Probab=96.68  E-value=0.0094  Score=49.82  Aligned_cols=141  Identities=16%  Similarity=0.150  Sum_probs=81.3

Q ss_pred             EEEEeCChhhHHHHHHhHHHHHHhcCCCceeEEEEEeeeceecCCC--ceeeeCCch--hhccchhhhhh---hhhcCCc
Q 042427           33 VYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGNSMMQPDG--TFVCQHGPG--ECLLNTIEACT---ISIYPDV  105 (229)
Q Consensus        33 vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a~~~~~~--~f~CQHG~~--EC~gN~~~aCa---i~~~~~~  105 (229)
                      +|+.-+|+.|-.+ ...|..+.. .+...+++++||.|+.....+.  ...+.+..-  +=......+|.   ...+...
T Consensus         2 ~F~dPlc~~C~~~-E~~l~kl~~-~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~a~la~kAA~~qg~   79 (176)
T PF13743_consen    2 LFVDPLCSWCWGF-EPELRKLKE-EYGNKIEFRFIPGGLMPDINDFMPRMPINGDFWRNEPRSSSYPACLAYKAAQLQGK   79 (176)
T ss_dssp             EEE-TT-HHHHHH-HHHHHHHHH-HS-TTEEEEEEE--SS-S--SB--H----TTHHHS--BS--HHHHHHHHHHHTTT-
T ss_pred             eeeCCCChHHHHh-HHHHHHHHH-HcCCcEEEEEEEccchHHHHHHHHhcCCCHHHhcCCCCCCchHHHHHHHHHHHhCh
Confidence            4677899999988 334555555 4889999999999998643111  111222211  11234555552   1123356


Q ss_pred             cchhhhhhhhhcchhh-----hhhHHHHHHHhhcCCCCCcc-ccccCcchhHHHHHHHHHhhhcCCCCeeeeEEEECC
Q 042427          106 VQHFSFIHCVERLALE-----KRQAEWINCFELTKLGRVPI-DCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNN  177 (229)
Q Consensus       106 ~~~~~fi~C~~~~~~~-----~~~~~~~~Ca~~~gl~~~~I-~C~~~~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG  177 (229)
                      ++...|+.-+.+....     +..+....+|++.|+|.+.. +=.+|+..++.+.+--+.+..+.  ++-.|+++|.+
T Consensus        80 k~~~~fL~~lQ~a~~~~~~~~s~~~~l~~iA~~~gLD~~~F~~d~~S~~~~~~~~~D~~la~~m~--I~~~Ptlvi~~  155 (176)
T PF13743_consen   80 KKARRFLRALQEALFLEGKNYSDEELLLEIAEELGLDVEMFKEDLHSDEAKQAFQEDQQLAREMG--ITGFPTLVIFN  155 (176)
T ss_dssp             H--HHHHHHHHHHHHTS---TTSHHHHHHHHHHTT--HHHHHHHHTSHHHHHHHHHHHHHHHHTT---SSSSEEEEE-
T ss_pred             hhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCCCHHHHHHHHhChHHHHHHHHHHHHHHHcC--CCCCCEEEEEe
Confidence            7778898888754321     22356779999999999988 55677888888887778888775  69999999865

>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE

Probab=96.33  E-value=0.022  Score=46.96  Aligned_cols=146  Identities=12%  Similarity=0.066  Sum_probs=89.0

Q ss_pred             eEEEEEEEeCChhhHHHHHHhHHHHHHhcCCCceeEEEEEeeeceecCC--------------------CceeeeCCchh
Q 042427           29 VTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGNSMMQPD--------------------GTFVCQHGPGE   88 (229)
Q Consensus        29 V~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a~~~~~--------------------~~f~CQHG~~E   88 (229)
                      ++|.+|+.-+||+|-... .+|..+.+. +...++|++.+++-.....+                    .+..-..++.+
T Consensus         1 ~~i~~~~D~~cp~c~~~~-~~l~~l~~~-~~~~~~v~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   78 (193)
T cd03025           1 LELYYFIDPLCGWCYGFE-PLLEKLKEE-YGGGIEVELHLGGLLPGNNARQITKQWRIYVHWHKARIALTGQPFGEDYLE   78 (193)
T ss_pred             CeEEEEECCCCchhhCch-HHHHHHHHH-hCCCceEEEEeccccCCCCCCCcchHHHHHHhHHHHHHHhcCCccCchhHh
Confidence            468999999999998774 456666653 54458888887764332110                    00111111110


Q ss_pred             ---hccchhhhhhhhhc---CCccchhhhhhhhhcchh-----hhhhHHHHHHHhhcCCCCCcc-ccccCcchhHHHHHH
Q 042427           89 ---CLLNTIEACTISIY---PDVVQHFSFIHCVERLAL-----EKRQAEWINCFELTKLGRVPI-DCYRNGLGKLLEQKY  156 (229)
Q Consensus        89 ---C~gN~~~aCai~~~---~~~~~~~~fi~C~~~~~~-----~~~~~~~~~Ca~~~gl~~~~I-~C~~~~~G~~Ll~~~  156 (229)
                         --.|...++..-..   .+......|..-+.....     -+..+.....+.+.|+|.+.+ .+.++...++.+.+.
T Consensus        79 ~~~~~~~s~~a~~~~~aa~~~~~~~~~~~~~~l~~a~~~~~~~i~~~~~l~~ia~~~Gld~~~~~~~~~s~~~~~~l~~~  158 (193)
T cd03025          79 LLLFDLDSAPASRAIKAARLQGPERLLEMLKAIQRAHYVEGRDLADTEVLRELAIELGLDVEEFLEDFQSDEAKQAIQED  158 (193)
T ss_pred             cccCCCCchHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCHHHHHHHHcChHHHHHHHHH
Confidence               00123333322111   122355677666644211     122335667899999999888 999998888888888


Q ss_pred             HHHhhhcCCCCeeeeEEEECCe
Q 042427          157 ATETAQLKPPHRFVPWVVVNNQ  178 (229)
Q Consensus       157 ~~~T~~l~P~~~~VPwI~iNG~  178 (229)
                      .+....+  .+.-+||++|++.
T Consensus       159 ~~~a~~~--gv~g~Ptfvv~~~  178 (193)
T cd03025         159 QKLAREL--GINGFPTLVLEDD  178 (193)
T ss_pred             HHHHHHc--CCCccCEEEEEeC
Confidence            7777765  4699999999764

FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.

>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []

Probab=96.04  E-value=0.023  Score=46.71  Aligned_cols=143  Identities=17%  Similarity=0.124  Sum_probs=80.6

Q ss_pred             EEEEEEEeCChhhHHHHHHhHHHHHHhcCCCceeEEEEEeeecee-c-CCC----c--------------------eeee
Q 042427           30 TVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGNSMM-Q-PDG----T--------------------FVCQ   83 (229)
Q Consensus        30 ~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a~~-~-~~~----~--------------------f~CQ   83 (229)
                      +|++|+.-.||.|-.+.. .|..+... ..+ ++|++.||.-... . ..+    .                    +.-.
T Consensus         1 ~i~~~~D~~Cp~cy~~~~-~l~~l~~~-~~~-~~i~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~gi~~~   77 (193)
T PF01323_consen    1 TIEFFFDFICPWCYLASP-RLRKLRAE-YPD-VEIEWRPFPLRPDMRRSGGAPPAEDPAKAEYMFQDLERWARRYGIPFN   77 (193)
T ss_dssp             EEEEEEBTTBHHHHHHHH-HHHHHHHH-HTT-CEEEEEEESSSTHHHHCT-SCGCGSHHHHHHHHHHHHHHHHHHT--TB
T ss_pred             CEEEEEeCCCHHHHHHHH-HHHHHHHH-hcC-CcEEEeccccccccccCCCCCcccChhHHHHHHHHHHHHHHHhcCccc
Confidence            589999999999999864 56666653 434 8999999873321 1 011    1                    0000


Q ss_pred             CCchhhccchhhhhhhhhc-CCccchhhhhhhh-----hcchhhhhhHHHHHHHhhcCCCCCcc-ccccCcchhHHHHHH
Q 042427           84 HGPGECLLNTIEACTISIY-PDVVQHFSFIHCV-----ERLALEKRQAEWINCFELTKLGRVPI-DCYRNGLGKLLEQKY  156 (229)
Q Consensus        84 HG~~EC~gN~~~aCai~~~-~~~~~~~~fi~C~-----~~~~~~~~~~~~~~Ca~~~gl~~~~I-~C~~~~~G~~Ll~~~  156 (229)
                      ..+.. .+|...+..+-.. ........+..=+     .....-+..+.....+++.|+|.+.+ +-..++.++..+.+.
T Consensus        78 ~~~~~-~~~s~~a~~~~~~a~~~~~~~~~~~al~~a~~~~~~~i~~~~vl~~~~~~~Gld~~~~~~~~~~~~~~~~~~~~  156 (193)
T PF01323_consen   78 FPPPF-PGNSRPAHRAAYAAQEQGKADAFADALFRAYFVEGRDISDPDVLAEIAEEAGLDPDEFDAALDSPEVKAALEED  156 (193)
T ss_dssp             TSSTH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSST-TSSHHHHHHHHHHTT--HHHHHHHHTSHHHHHHHHHH
T ss_pred             CCchh-hhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcccCCCCHHHHHHHHHHcCCcHHHHHHHhcchHHHHHHHHH
Confidence            00000 0122333322211 1111111221111     11111122344667899999999888 888888888888887


Q ss_pred             HHHhhhcCCCCeeeeEEEECCe
Q 042427          157 ATETAQLKPPHRFVPWVVVNNQ  178 (229)
Q Consensus       157 ~~~T~~l~P~~~~VPwI~iNG~  178 (229)
                      .++...+  .+..|||++|||+
T Consensus       157 ~~~a~~~--gv~GvP~~vv~g~  176 (193)
T PF01323_consen  157 TAEARQL--GVFGVPTFVVNGK  176 (193)
T ss_dssp             HHHHHHT--TCSSSSEEEETTT
T ss_pred             HHHHHHc--CCcccCEEEECCE
Confidence            7777665  5799999999998

The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....

>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway

Probab=94.22  E-value=0.085  Score=43.30  Aligned_cols=54  Identities=15%  Similarity=-0.017  Sum_probs=44.9

Q ss_pred             HHHHHHHhhcCCCCCcc-ccccCcchhHHHHHHHHHhhhcCCCCeeeeEEEECCeec
Q 042427          125 AEWINCFELTKLGRVPI-DCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQPL  180 (229)
Q Consensus       125 ~~~~~Ca~~~gl~~~~I-~C~~~~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~  180 (229)
                      +....+++..|+|.+.+ ++.++++.++.+.+..+....+  .+.-||+++|||+..
T Consensus       124 ~~l~~~a~~~Gld~~~~~~~~~~~~~~~~l~~~~~~a~~~--gi~gvPtfvv~g~~~  178 (192)
T cd03022         124 AVLAAVAAAAGLDADELLAAADDPAVKAALRANTEEAIAR--GVFGVPTFVVDGEMF  178 (192)
T ss_pred             HHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHHHHHHHHHc--CCCcCCeEEECCeee
Confidence            34667999999999888 9999988877777777776665  589999999999864

It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).

>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=89.72  E-value=2  Score=37.66  Aligned_cols=168  Identities=15%  Similarity=0.166  Sum_probs=97.4

Q ss_pred             CCCceEEEEEEEeCChhhHHHHHHhHHHHHHhcCCCceeEEE--EEeeeceec-CCC-----------ce----eeeCC-
Q 042427           25 SSENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRM--IPWGNSMMQ-PDG-----------TF----VCQHG-   85 (229)
Q Consensus        25 ~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~l--vP~G~a~~~-~~~-----------~f----~CQHG-   85 (229)
                      ...+++|+||..=.||.|--. ..-|..+... +.+.+++++  -||--.-.. +.|           +.    .=.|. 
T Consensus         2 ~~~~i~I~v~sD~vCPwC~ig-~~rL~ka~~~-~~~~~~v~i~w~pf~l~p~~~~~g~~~~~~l~~k~g~~~~~~~~~~~   79 (225)
T COG2761           2 NPMKIEIDVFSDVVCPWCYIG-KRRLEKALAE-YPQEVRVEIRWRPFELDPDLPPEGLDRKEYLAQKYGISEEQKAAHAR   79 (225)
T ss_pred             CCceEEEEEEeCCcCchhhcC-HHHHHHHHHh-cCcceeEEEEecccccCCCCCcccccHHHHHHHHhCccHHHHHHHHH
Confidence            356899999999999999765 4456666653 665555544  444321110 100           00    00000 


Q ss_pred             ----chh-----------hccchhhhhhhhhcC-Ccc-chhhhhhhhhcchhh-----hhhHHHHHHHhhcCCCCCcc-c
Q 042427           86 ----PGE-----------CLLNTIEACTISIYP-DVV-QHFSFIHCVERLALE-----KRQAEWINCFELTKLGRVPI-D  142 (229)
Q Consensus        86 ----~~E-----------C~gN~~~aCai~~~~-~~~-~~~~fi~C~~~~~~~-----~~~~~~~~Ca~~~gl~~~~I-~  142 (229)
                          -.|           =..|.+.||-+-++. ... .+..|+.=+.+..+.     ++.+..-.||..+|||.+.+ .
T Consensus        80 ~~~~~~~~Gi~~~f~~~~~~~nt~~Ah~l~~~A~~~G~~~~~~~~~lf~AyF~eg~nI~D~dVL~diA~~~GLD~~~~~~  159 (225)
T COG2761          80 LEELAEEEGIDFNFDAIVPAPNTLDAHRLIKAAELQGKAQDRFLEALFEAYFEEGRNIGDEDVLADIAEEVGLDREEFKA  159 (225)
T ss_pred             HHHhhHhcCcccchhhccCCCchHHHHHHHHHHHHhCchHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHhCCCHHHHHH
Confidence                111           234557777665542 122 477777776554332     23445668999999998877 6


Q ss_pred             cccCcchhHHHHHHHHHhhhcCCCCeeeeEEEECCeec--h-hhhhhHHHHHHHhhc
Q 042427          143 CYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQPL--Q-EDFMNFANHVCKAYK  196 (229)
Q Consensus       143 C~~~~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~--~-~~~~nl~~~VC~~y~  196 (229)
                      =..|+..++=...-.+.+..  -.++-||+.+|+|++.  + ...+-|...+=+...
T Consensus       160 ~L~s~~~~~avr~d~~~A~e--~gI~gVP~fv~d~~~~V~Gaq~~~v~~~al~~~~~  214 (225)
T COG2761         160 DLASDAAKDAVRQDEAAAQE--MGIRGVPTFVFDGKYAVSGAQPYDVLEDALRQLLA  214 (225)
T ss_pred             HHhChHHHHHHHHHHHHHHH--CCCccCceEEEcCcEeecCCCCHHHHHHHHHHHHh
Confidence            66676665555555555554  4689999999977653  1 123345555554443

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=87.63  E-value=1.2  Score=39.41  Aligned_cols=43  Identities=28%  Similarity=0.457  Sum_probs=34.4

Q ss_pred             CCCceEEEEEEEeCChhhHHHHHHhHHHHHHhcCCCceeEEEEEeee
Q 042427           25 SSENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGN   71 (229)
Q Consensus        25 ~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~   71 (229)
                      .+.+..|.||..-.||+|++|-. .+.|..+.   ..+.++++|++-
T Consensus       115 ~~ak~~I~vFtDp~CpyC~kl~~-~l~~~~~~---g~V~v~~ip~~~  157 (251)
T PRK11657        115 ADAPRIVYVFADPNCPYCKQFWQ-QARPWVDS---GKVQLRHILVGI  157 (251)
T ss_pred             CCCCeEEEEEECCCChhHHHHHH-HHHHHhhc---CceEEEEEeccc
Confidence            56789999999999999999964 57776652   348889998765

>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=86.62  E-value=4.7  Score=34.56  Aligned_cols=148  Identities=18%  Similarity=0.181  Sum_probs=78.5

Q ss_pred             CCceEEEEEEEeCChhhHHHHHHhHHHHHHhcCCCceeEEEEEeeeceecCCCceeeeCCchhhccchhhhhhhhhcCCc
Q 042427           26 SENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGNSMMQPDGTFVCQHGPGECLLNTIEACTISIYPDV  105 (229)
Q Consensus        26 ~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a~~~~~~~f~CQHG~~EC~gN~~~aCai~~~~~~  105 (229)
                      ..+|.|.+|.+-.||.|.+.+. .|...+.. ..+ +++.+++|--......   .|++      +-..-.|+.+.-.  
T Consensus        83 ~~~v~v~~f~d~~Cp~C~~~~~-~l~~~~i~-~~~-~~~~~~~~~f~~~~~~---~~~~------a~~~~~~~~~~~~--  148 (244)
T COG1651          83 YAPVTVVEFFDYTCPYCKEAFP-ELKKKYID-DGK-VRLVLREFPFLDPACP---YCRR------AAQAARCAADQGI--  148 (244)
T ss_pred             CCCceEEEEecCcCccHHHHHH-HHHHHhhh-cCC-CceEEEEeecCCCCcH---HHHH------HHHHHHHhccccc--
Confidence            4499999999999999966543 34333331 222 2444444433321101   1333      3334445554221  


Q ss_pred             cchhhhhhhhhcchhhhhhHHHHHHHhhc------CCCCCcc-ccccCcchhHHHHHHHHHhhhcCCCCeeeeEEEECCe
Q 042427          106 VQHFSFIHCVERLALEKRQAEWINCFELT------KLGRVPI-DCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQ  178 (229)
Q Consensus       106 ~~~~~fi~C~~~~~~~~~~~~~~~Ca~~~------gl~~~~I-~C~~~~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~  178 (229)
                      ..+|.|..=+.+... .....+..|+...      ..+ ... .|........+..+.-+....+  .++..|+++|||+
T Consensus       149 ~~y~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~a~~~--gv~gTPt~~v~~~  224 (244)
T COG1651         149 VRYWAFHDALFGSQA-EAWAASILCAKDLAKADLAALD-EGKKAKLNQKACDALIAKNYKLAQQL--GVNGTPTFIVNGK  224 (244)
T ss_pred             hhHHHHHHHHhhccc-cchhhhhhhhhhhhhhhHHHHH-hhhhhccChHHHHHHHHHHHHHHHhc--CCCcCCeEEECCe
Confidence            357777766655321 1223344454432      121 234 7765444556666666665554  4899999999997


Q ss_pred             echh--hhhhHHHHH
Q 042427          179 PLQE--DFMNFANHV  191 (229)
Q Consensus       179 ~~~~--~~~nl~~~V  191 (229)
                      .+..  ....|...|
T Consensus       225 ~~~g~~~~~~l~~~i  239 (244)
T COG1651         225 LVPGLPDLDELKAII  239 (244)
T ss_pred             eecCCCCHHHHHHHH
Confidence            5421  234444443

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=86.00  E-value=1.2  Score=35.46  Aligned_cols=44  Identities=25%  Similarity=0.350  Sum_probs=26.2

Q ss_pred             CCCceEEEEEEEeCChhhHHHHHHhHHHHHHhcCCCceeEEEEEeee
Q 042427           25 SSENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGN   71 (229)
Q Consensus        25 ~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~   71 (229)
                      -..++++.|+.|+-||||++++= .|..+.+  ....++++++.-..
T Consensus        39 ~~~~~~ilvi~e~WCgD~~~~vP-~l~kiae--~~p~i~~~~i~rd~   82 (129)
T PF14595_consen   39 IQKPYNILVITETWCGDCARNVP-VLAKIAE--ANPNIEVRIILRDE   82 (129)
T ss_dssp             --S-EEEEEE--TT-HHHHHHHH-HHHHHHH--H-TTEEEEEE-HHH
T ss_pred             cCCCcEEEEEECCCchhHHHHHH-HHHHHHH--hCCCCeEEEEEecC
Confidence            46788999999999999999862 3444443  34468888887543

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=85.73  E-value=1.3  Score=31.17  Aligned_cols=41  Identities=27%  Similarity=0.483  Sum_probs=32.4

Q ss_pred             EEEEEEeCChhhHHHHHHhHHHHHHhcCCCceeEEEEEeeece
Q 042427           31 VSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGNSM   73 (229)
Q Consensus        31 V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a~   73 (229)
                      |.+|+.-.||.|..+. .+|.++.. ...+.++++++|+.-..
T Consensus         1 i~~f~d~~Cp~C~~~~-~~l~~~~~-~~~~~~~~~~~~~~~~~   41 (98)
T cd02972           1 IVEFFDPLCPYCYLFE-PELEKLLY-ADDGGVRVVYRPFPLLG   41 (98)
T ss_pred             CeEEECCCCHhHHhhh-HHHHHHHh-hcCCcEEEEEeccccCC
Confidence            4688999999999995 46777764 35677999999987665

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins

Probab=81.57  E-value=0.81  Score=34.82  Aligned_cols=21  Identities=38%  Similarity=0.305  Sum_probs=12.9

Q ss_pred             CcchhhHhHHHHHHHHHhhcc
Q 042427            1 MASTKLLTFFFPASLLLLSIS   21 (229)
Q Consensus         1 ~~~~~~~~~~~~~~ll~~~~~   21 (229)
                      |+|.+++++.++.+.|||+++
T Consensus         1 MaSK~~llL~l~LA~lLlisS   21 (95)
T PF07172_consen    1 MASKAFLLLGLLLAALLLISS   21 (95)
T ss_pred             CchhHHHHHHHHHHHHHHHHh
Confidence            899887766555443444444

Some of them may be involved in resistance to environmental stress [].

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=81.17  E-value=4.9  Score=30.22  Aligned_cols=50  Identities=14%  Similarity=0.058  Sum_probs=36.5

Q ss_pred             HHHHHhhcCCCCCccccccCcchhHHHHHHHHHhhhcCCCCeeeeEEEECCeech
Q 042427          127 WINCFELTKLGRVPIDCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQPLQ  181 (229)
Q Consensus       127 ~~~Ca~~~gl~~~~I~C~~~~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~~  181 (229)
                      .++-+++.|++...++--..+.+.++.....+.|.     .+.||.|.|||++++
T Consensus        24 ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg-----~~tvP~Vfi~g~~iG   73 (99)
T TIGR02189        24 VKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGC-----SPAVPAVFVGGKLVG   73 (99)
T ss_pred             HHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcC-----CCCcCeEEECCEEEc
Confidence            34456677887765544456778888887776663     468999999999874

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	229
3gha_A	202	Disulfide bond formation protein D; BDBD, DSBA-lik	98.47
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	98.46
3bci_A	186	Disulfide bond protein A; thiol-disulfide oxidored	98.44
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	98.24
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	98.2
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	98.09
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	98.09
3gmf_A	205	Protein-disulfide isomerase; oxidoreductase, PSI-2	98.08
3f4s_A	226	Alpha-DSBA1, putative uncharacterized protein; thi	98.06
4dvc_A	184	Thiol:disulfide interchange protein DSBA; pilus as	98.06
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	97.86
1z6m_A	175	Conserved hypothetical protein; structural genomic	97.77
3gn3_A	182	Putative protein-disulfide isomerase; MCSG, PSI, s	97.43
3l9v_A	189	Putative thiol-disulfide isomerase or thioredoxin;	97.42
2in3_A	216	Hypothetical protein; DSBA family, FRNE-like subfa	97.36
2imf_A	203	HCCA isomerase, 2-hydroxychromene-2-carboxylate is	97.35
3c7m_A	195	Thiol:disulfide interchange protein DSBA-like; red	97.33
3l9s_A	191	Thiol:disulfide interchange protein; thioredoxin-f	97.31
3kzq_A	208	Putative uncharacterized protein VP2116; protein w	96.84
3feu_A	185	Putative lipoprotein; alpha-beta structure, struct	96.53
3gl5_A	239	Putative DSBA oxidoreductase SCO1869; probable DSB	96.15
3fz5_A	202	Possible 2-hydroxychromene-2-carboxylate isomeras;	94.59
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	92.04
1r4w_A	226	Glutathione S-transferase, mitochondrial; glutathi	89.92
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	87.94
3rpp_A	234	Glutathione S-transferase kappa 1; glutathione tra	86.95
3tdg_A	273	DSBG, putative uncharacterized protein; thioredoxi	83.46

>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A

Probab=98.47  E-value=9e-07  Score=73.77  Aligned_cols=156  Identities=17%  Similarity=0.177  Sum_probs=106.2

Q ss_pred             CCCceEEEEEEEeCChhhHHHHHHhHHHHHHhcCC--CceeEEEEEeeeceecCCCceeeeCCchhhccchhhhhhhhhc
Q 042427           25 SSENVTVSVYYETLCPYCADFIVNHLVKLFQKGLN--SIVNLRMIPWGNSMMQPDGTFVCQHGPGECLLNTIEACTISIY  102 (229)
Q Consensus        25 ~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~--~~vdl~lvP~G~a~~~~~~~f~CQHG~~EC~gN~~~aCai~~~  102 (229)
                      .+.+|.|..|..=.||+|++|- ..+.|.+.+.+.  +.+.|.+.||--            ||+.-=.+-..-.|+..  
T Consensus        27 ~~a~vtvvef~D~~CP~C~~~~-~~~~~~l~~~~~~~g~v~~~~~~~p~------------~~~~s~~Aa~aa~a~~~--   91 (202)
T 3gha_A           27 DDAPVTVVEFGDYKCPSCKVFN-SDIFPKIQKDFIDKGDVKFSFVNVMF------------HGKGSRLAALASEEVWK--   91 (202)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHH-HHTHHHHHHHTTTTTSEEEEEEECCC------------SHHHHHHHHHHHHHHHH--
T ss_pred             CCCCEEEEEEECCCChhHHHHH-HHhhHHHHHHhccCCeEEEEEEecCc------------cchhHHHHHHHHHHHHh--
Confidence            5679999999999999999995 456776654353  467787777642            22211111122233332  


Q ss_pred             CCccchhhhhhhhhcchhh-----hhhHHHHHHHhh-cCCCCCcc-ccccCcchhHHHHHHHHHhhhcCCCCeeeeEEEE
Q 042427          103 PDVVQHFSFIHCVERLALE-----KRQAEWINCFEL-TKLGRVPI-DCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVV  175 (229)
Q Consensus       103 ~~~~~~~~fi~C~~~~~~~-----~~~~~~~~Ca~~-~gl~~~~I-~C~~~~~G~~Ll~~~~~~T~~l~P~~~~VPwI~i  175 (229)
                      .++.++|+|..=+......     .........+++ .|+|.+.+ +|.++......+.+..+....+  .++.+|+++|
T Consensus        92 ~~~~~f~~~~~aLf~~~~~~~~~~~~~~~L~~~a~~~~Gld~~~~~~~l~s~~~~~~v~~~~~~a~~~--gV~gtPtfvv  169 (202)
T 3gha_A           92 EDPDSFWDFHEKLFEKQPDTEQEWVTPGLLGDLAKSTTKIKPETLKENLDKETFASQVEKDSDLNQKM--NIQATPTIYV  169 (202)
T ss_dssp             HCGGGHHHHHHHHHHHCCSSSSCCCCHHHHHHHHHHHSSSCHHHHHHHHHHTTTHHHHHHHHHHHHHT--TCCSSCEEEE
T ss_pred             hCHHHHHHHHHHHHHhCccccccccCHHHHHHHHHHhcCCCHHHHHHHHhChHHHHHHHHHHHHHHHc--CCCcCCEEEE
Confidence            2467788888777643211     123445678888 89999989 9998887777777776666665  5899999999


Q ss_pred             CCeech--hhhhhHHHHHHHhhcC
Q 042427          176 NNQPLQ--EDFMNFANHVCKAYKG  197 (229)
Q Consensus       176 NG~~~~--~~~~nl~~~VC~~y~g  197 (229)
                      ||+.+.  ...+.|.+.|=+..++
T Consensus       170 nG~~~~G~~~~e~l~~~i~~~~~~  193 (202)
T 3gha_A          170 NDKVIKNFADYDEIKETIEKELKG  193 (202)
T ss_dssp             TTEECSCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEecCCCCHHHHHHHHHHHHHh
Confidence            999864  3466788887766655

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=98.46  E-value=1.8e-06  Score=69.03  Aligned_cols=148  Identities=14%  Similarity=0.142  Sum_probs=96.5

Q ss_pred             CCCceEEEEEEEeCChhhHHHHHHhHHHHHHhcCCCceeEEEEEeeeceecCCCceeeeCCchhhccchhhhhhhhhcCC
Q 042427           25 SSENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGNSMMQPDGTFVCQHGPGECLLNTIEACTISIYPD  104 (229)
Q Consensus        25 ~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a~~~~~~~f~CQHG~~EC~gN~~~aCai~~~~~  104 (229)
                      .+.+|.|.+|+...||+|++|. ..|.+++++ ..+ +.|.++++.-.            |+.-=...+.-.|+..    
T Consensus        20 ~~a~v~i~~f~d~~Cp~C~~~~-~~l~~l~~~-~~~-v~~~~~~~p~~------------~~~s~~aa~~~~~a~~----   80 (175)
T 3gyk_A           20 PEGDVTVVEFFDYNCPYCRRAM-AEVQGLVDA-DPN-VRLVYREWPIL------------GEGSDFAARAALAARQ----   80 (175)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHH-HHHHHHHHH-CTT-EEEEEEECCCS------------CHHHHHHHHHHHHGGG----
T ss_pred             CCCCEEEEEEECCCCccHHHHH-HHHHHHHHh-CCC-EEEEEEeCCCC------------CCChHHHHHHHHHHHH----
Confidence            5679999999999999999996 467777774 556 77777665431            1111112222223322    


Q ss_pred             ccchhhhhhhhhcchhhhhhHHHHHHHhhcCCCCCcc-ccccCcchhHHHHHHHHHhhhcCCCCeeeeEEEECCeech--
Q 042427          105 VVQHFSFIHCVERLALEKRQAEWINCFELTKLGRVPI-DCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQPLQ--  181 (229)
Q Consensus       105 ~~~~~~fi~C~~~~~~~~~~~~~~~Ca~~~gl~~~~I-~C~~~~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~~--  181 (229)
                      ....+.|..=+...............++..|++.+.+ +|.++......+.+..+....+  .++.+|+++|||+.+.  
T Consensus        81 ~~~~~~~~~~lf~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~--gv~gtPt~~i~g~~~~G~  158 (175)
T 3gyk_A           81 QGKYEAFHWALMGMSGKANETGVLRIAREVGLDTEQLQRDMEAPEVTAHIAQSMALAQKL--GFNGTPSFVVEDALVPGF  158 (175)
T ss_dssp             GTCHHHHHHHHHTCSSCCSHHHHHHHHHHTTCCHHHHHHHTTCHHHHHHHHHHHHHHHHH--TCCSSSEEEETTEEECSC
T ss_pred             HhHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHc--CCccCCEEEECCEEeeCC
Confidence            2344555443332211112344567899999999999 9999988888888877777765  4789999999998653  


Q ss_pred             hhhhhHHHHHHH
Q 042427          182 EDFMNFANHVCK  193 (229)
Q Consensus       182 ~~~~nl~~~VC~  193 (229)
                      ...+.|.+.|=+
T Consensus       159 ~~~~~l~~~i~~  170 (175)
T 3gyk_A          159 VEQSQLQDAVDR  170 (175)
T ss_dssp             CCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHH
Confidence            234455555543

>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A

Probab=98.44  E-value=1.9e-06  Score=69.80  Aligned_cols=154  Identities=12%  Similarity=0.169  Sum_probs=96.2

Q ss_pred             CCCceEEEEEEEeCChhhHHHHHHhHHHHHHhcCC--CceeEEEEEeeeceecCCCceeeeCCchhhccchhhhhhhhhc
Q 042427           25 SSENVTVSVYYETLCPYCADFIVNHLVKLFQKGLN--SIVNLRMIPWGNSMMQPDGTFVCQHGPGECLLNTIEACTISIY  102 (229)
Q Consensus        25 ~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~--~~vdl~lvP~G~a~~~~~~~f~CQHG~~EC~gN~~~aCai~~~  102 (229)
                      .+.++.|.+|+.-.||+|.+|- ..|.|.+.+.+.  +.+.|.+.||.-            ||+.-=.....-.|+... 
T Consensus         9 ~~a~~~i~~f~D~~Cp~C~~~~-~~l~~~l~~~~~~~~~v~~~~~~~p~------------~~~~s~~aa~a~~~a~~~-   74 (186)
T 3bci_A            9 KNGKPLVVVYGDYKCPYCKELD-EKVMPKLRKNYIDNHKVEYQFVNLAF------------LGKDSIVGSRASHAVLMY-   74 (186)
T ss_dssp             --CCCEEEEEECTTCHHHHHHH-HHHHHHHHHHTTTTTSSEEEEEECCC------------SCTTHHHHHHHHHHHHHH-
T ss_pred             CCCCeEEEEEECCCChhHHHHH-HHHHHHHHHHhccCCeEEEEEEecCc------------CCcchHHHHHHHHHHHHh-
Confidence            5679999999999999999995 456666543343  357888888742            222211222333344332 


Q ss_pred             CCccchhhhhhhhhcchhh-----hhhHHHHHHHhhcCCCCCc---c-ccc--cCcchhHHHHHHHHHhhhcCCCCeeee
Q 042427          103 PDVVQHFSFIHCVERLALE-----KRQAEWINCFELTKLGRVP---I-DCY--RNGLGKLLEQKYATETAQLKPPHRFVP  171 (229)
Q Consensus       103 ~~~~~~~~fi~C~~~~~~~-----~~~~~~~~Ca~~~gl~~~~---I-~C~--~~~~G~~Ll~~~~~~T~~l~P~~~~VP  171 (229)
                       +....++|..=+......     .........+++.|+|.+.   + +|.  ++......+.+..+....+  .++.+|
T Consensus        75 -~~~~~~~~~~~lf~~~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~~~--gv~GtP  151 (186)
T 3bci_A           75 -APKSFLDFQKQLFAAQQDENKEWLTKELLDKHIKQLHLDKETENKIIKDYKTKDSKSWKAAEKDKKIAKDN--HIKTTP  151 (186)
T ss_dssp             -CGGGHHHHHHHHHHTCCCTTSCCCCHHHHHHHHHTTCCCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHT--TCCSSS
T ss_pred             -CHHHHHHHHHHHHhcCcccCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHc--CCCCCC
Confidence             233456665544432110     1234566788999999988   8 998  7777666666665555554  589999


Q ss_pred             EEEECCeech--hhhhhHHHHHHHhh
Q 042427          172 WVVVNNQPLQ--EDFMNFANHVCKAY  195 (229)
Q Consensus       172 wI~iNG~~~~--~~~~nl~~~VC~~y  195 (229)
                      +++|||+.+.  ...+.|.+.|=...
T Consensus       152 t~vvnG~~~~G~~~~~~l~~~i~~~~  177 (186)
T 3bci_A          152 TAFINGEKVEDPYDYESYEKLLKDKI  177 (186)
T ss_dssp             EEEETTEECSCTTCHHHHHHHHHC--
T ss_pred             eEEECCEEcCCCCCHHHHHHHHHHHH
Confidence            9999998763  23556766665443

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=98.24  E-value=8.7e-06  Score=65.83  Aligned_cols=146  Identities=12%  Similarity=0.013  Sum_probs=92.8

Q ss_pred             CCceEEEEEEEeCChhhHHHHHHhHHHHHHhcCCCceeEEEEEeeeceecCCCceeeeCCchhhccchhhhhhhhhcCCc
Q 042427           26 SENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGNSMMQPDGTFVCQHGPGECLLNTIEACTISIYPDV  105 (229)
Q Consensus        26 ~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a~~~~~~~f~CQHG~~EC~gN~~~aCai~~~~~~  105 (229)
                      +.+|.|.+|+...||.|..|.. .|.++.++ ..+.+.++.+|+...   +++         + ...+.-.|+..    .
T Consensus        24 ~a~v~i~~f~d~~Cp~C~~~~~-~l~~l~~~-~~~~v~~~~~p~~~~---~~s---------~-~a~~a~~~a~~----~   84 (193)
T 2rem_A           24 AGKIEVVEIFGYTCPHCAHFDS-KLQAWGAR-QAKDVRFTLVPAVFG---GVW---------D-PFARAYLAADV----L   84 (193)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHH-HHHHHHHT-SCTTEEEEEEECCCS---TTH---------H-HHHHHHHHHHH----T
T ss_pred             CCCeEEEEEECCCChhHhhhhH-HHHHHHHh-cCCceEEEEeCcccC---CCc---------H-HHHHHHHHHHH----c
Confidence            5799999999999999999964 56666664 666688888887421   110         0 11122223321    1


Q ss_pred             cchhhhhhhhhcchh--------hhhhHHHHHHHhhcCCCCCcc-ccccCcchhHHHHHHHHHhhhcCCCCeeeeEEEEC
Q 042427          106 VQHFSFIHCVERLAL--------EKRQAEWINCFELTKLGRVPI-DCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVN  176 (229)
Q Consensus       106 ~~~~~fi~C~~~~~~--------~~~~~~~~~Ca~~~gl~~~~I-~C~~~~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iN  176 (229)
                      ...++|..=+.....        ..........+++.|+|.+.+ .|.++......+.+..+....+  .++.+|+++||
T Consensus        85 ~~~~~~~~~lf~~~~~~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~--gv~gtPt~vin  162 (193)
T 2rem_A           85 GVAKRSHTAMFEAIHEKGSVPIQNVGPDELAVFYAGYGVQPDRFVATFNGPEVEKRFQAARAYALKV--RPVGTPTIVVN  162 (193)
T ss_dssp             TCHHHHHHHHHHHHHTTCCSCSTTCCHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHH--CCSSSSEEEET
T ss_pred             CcHHHHHHHHHHHHHHhcccCcCCCCHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHh--CCCCCCeEEEC
Confidence            234455444433210        112345667889999999989 9999888777777766666655  47999999999


Q ss_pred             Ceec-h-hhhhhHHHHHH
Q 042427          177 NQPL-Q-EDFMNFANHVC  192 (229)
Q Consensus       177 G~~~-~-~~~~nl~~~VC  192 (229)
                      |+.. . ...++|.+.|=
T Consensus       163 g~~~~~g~~~~~l~~~i~  180 (193)
T 2rem_A          163 GRYMVTGHDFEDTLRITD  180 (193)
T ss_dssp             TTEEECCSSHHHHHHHHH
T ss_pred             CEEEecCCCHHHHHHHHH
Confidence            9864 1 13444554443

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=98.20  E-value=5.1e-06  Score=67.49  Aligned_cols=135  Identities=16%  Similarity=0.053  Sum_probs=88.4

Q ss_pred             CCCceEEEEEEEeCChhhHHHHHHhHHHHHHhcCCCceeEEEEEeeeceecCCCceeeeCCchhhccchhhhhhhhhcCC
Q 042427           25 SSENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGNSMMQPDGTFVCQHGPGECLLNTIEACTISIYPD  104 (229)
Q Consensus        25 ~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a~~~~~~~f~CQHG~~EC~gN~~~aCai~~~~~  104 (229)
                      .+.+|.|..|+...||.|++|.. .|..+.+ .+.+.+.++.+|...            |+... ...+.-.|+..    
T Consensus        23 ~~~~~~i~~f~d~~Cp~C~~~~~-~l~~l~~-~~~~~v~~~~~p~~~------------~~~~~-~aa~a~~aa~~----   83 (192)
T 3h93_A           23 QPGKIEVVELFWYGCPHCYAFEP-TIVPWSE-KLPADVHFVRLPALF------------GGIWN-VHGQMFLTLES----   83 (192)
T ss_dssp             STTSEEEEEEECTTCHHHHHHHH-HHHHHHH-TCCTTEEEEEEECCC------------STHHH-HHHHHHHHHHH----
T ss_pred             CCCCCEEEEEECCCChhHHHhhH-HHHHHHH-hCCCCeEEEEEehhh------------ccchH-HHHHHHHHHHH----
Confidence            46799999999999999999953 4544444 466767787777531            11000 01111222221    


Q ss_pred             ccchhhhhhhhhcchh-----hhhhHHHHHHHhhcCCCCCcc-ccccCcchhHHHHHHHHHhhhcCCCCeeeeEEEECCe
Q 042427          105 VVQHFSFIHCVERLAL-----EKRQAEWINCFELTKLGRVPI-DCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQ  178 (229)
Q Consensus       105 ~~~~~~fi~C~~~~~~-----~~~~~~~~~Ca~~~gl~~~~I-~C~~~~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~  178 (229)
                      ....++|..=+.....     ..........++..|+|.+.+ +|.++......+.+..+....+  .++.+|+++|||+
T Consensus        84 ~g~~~~~~~~lf~~~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~--gv~gtPt~~vng~  161 (192)
T 3h93_A           84 MGVEHDVHNAVFEAIHKEHKKLATPEEMADFLAGKGVDKEKFLSTYNSFAIKGQMEKAKKLAMAY--QVTGVPTMVVNGK  161 (192)
T ss_dssp             HTCCHHHHHHHHHHHHTSCCCCCSHHHHHHHHHTTTCCHHHHHHHHTCHHHHHHHHHHHHHHHHH--TCCSSSEEEETTT
T ss_pred             cCCHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHcCCCHHHHHHHhhCHHHHHHHHHHHHHHHHh--CCCCCCeEEECCE
Confidence            2244555555443211     012345667899999999989 9999988888887777776665  5799999999998


Q ss_pred             ec
Q 042427          179 PL  180 (229)
Q Consensus       179 ~~  180 (229)
                      ..
T Consensus       162 ~~  163 (192)
T 3h93_A          162 YR  163 (192)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=98.09  E-value=4.5e-05  Score=61.95  Aligned_cols=146  Identities=11%  Similarity=0.022  Sum_probs=92.1

Q ss_pred             CCCceEEEEEEEeCChhhHHHHHHhHHHHHHhcCCCceeEEEEEeeeceecCCCceeeeCCchhhccchhhhhhhhhcCC
Q 042427           25 SSENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGNSMMQPDGTFVCQHGPGECLLNTIEACTISIYPD  104 (229)
Q Consensus        25 ~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a~~~~~~~f~CQHG~~EC~gN~~~aCai~~~~~  104 (229)
                      .+.++.|.+|+...||.|++|. ..|..+.+ .+.+.+.+..+|.-..             +.-=...+.-.|+.. .. 
T Consensus        23 ~~~~~~vv~f~d~~Cp~C~~~~-~~l~~l~~-~~~~~v~~~~~~~~~~-------------~~s~~aa~a~~aa~~-~g-   85 (195)
T 3hd5_A           23 TPGKIEVLEFFAYTCPHCAAIE-PMVEDWAK-TAPQDVVLKQVPIAFN-------------AGMKPLQQLYYTLQA-LE-   85 (195)
T ss_dssp             STTCEEEEEEECTTCHHHHHHH-HHHHHHHH-TCCTTEEEEEEECCSS-------------GGGHHHHHHHHHHHH-TT-
T ss_pred             CCCCeEEEEEECCCCccHHHhh-HHHHHHHH-HCCCCeEEEEEecccC-------------cchHHHHHHHHHHHh-cC-
Confidence            4579999999999999999995 34544544 4666677777775321             000011222223322 11 


Q ss_pred             ccchhhhhhhhhcchh-----hhhhHHHHHHHhhcCCCCCcc-ccccCcchhHHHHHHHHHhhhcCCCCeeeeEEEECCe
Q 042427          105 VVQHFSFIHCVERLAL-----EKRQAEWINCFELTKLGRVPI-DCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQ  178 (229)
Q Consensus       105 ~~~~~~fi~C~~~~~~-----~~~~~~~~~Ca~~~gl~~~~I-~C~~~~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~  178 (229)
                         .++|..=+.....     ....+.....+++.|+|.+.+ +|.++......+.+..+....+  .++.+|+++|||+
T Consensus        86 ---~~~~~~~lf~~~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~--gv~gtPt~ving~  160 (195)
T 3hd5_A           86 ---RPDLHPKVFTAIHTERKRLFDKKAMGEWAASQGVDRAKFDSVFDSFSVQTQVQRASQLAEAA--HIDGTPAFAVGGR  160 (195)
T ss_dssp             ---CTTHHHHHHHHHHTSCCCCCSHHHHHHHHHHTTCCHHHHHHHHTCHHHHHHHHHHHHHHHHT--TCCSSSEEEETTT
T ss_pred             ---HHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHHHHHHcCHHHHHHHHHHHHHHHHh--CCCcCceEEECCE
Confidence               3333333322110     012345667889999999889 9999988888888877777765  5799999999998


Q ss_pred             ech-----hhh-hhHHHHHH
Q 042427          179 PLQ-----EDF-MNFANHVC  192 (229)
Q Consensus       179 ~~~-----~~~-~nl~~~VC  192 (229)
                      ...     ... ++|.+.+=
T Consensus       161 ~~~~g~~~~~~~e~~~~~i~  180 (195)
T 3hd5_A          161 YMTSPVLAGNDYAGALKVVD  180 (195)
T ss_dssp             EEECTTTTTGGGTTHHHHHH
T ss_pred             EEeCccccCChHHHHHHHHH
Confidence            642     123 56666553

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=98.09  E-value=1.2e-05  Score=65.19  Aligned_cols=134  Identities=16%  Similarity=0.058  Sum_probs=88.6

Q ss_pred             CCCceEEEEEEEeCChhhHHHHHHhHHHHHHhcCCCceeEEEEEeeeceecCCCceeeeCCchhhccchhhhhhhhhcCC
Q 042427           25 SSENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGNSMMQPDGTFVCQHGPGECLLNTIEACTISIYPD  104 (229)
Q Consensus        25 ~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a~~~~~~~f~CQHG~~EC~gN~~~aCai~~~~~  104 (229)
                      .+.++.|.+|+...||.|.+|.. .|..+.++ ..+.+.++.+|...            |+.. =...+.-.|+-.    
T Consensus        20 ~~~~~~i~~f~d~~Cp~C~~~~~-~l~~l~~~-~~~~v~~~~~p~~~------------~~~s-~~aa~a~~aa~~----   80 (195)
T 2znm_A           20 QSGKIEVLEFFGYFCVHCHHFDP-LLLKLGKA-LPSDAYLRTEHVVW------------QPEM-LGLARMAAAVNL----   80 (195)
T ss_dssp             SSSSEEEEEEECTTSCCTTSSCH-HHHHHHHH-SCTTEEEEEEECCC------------SGGG-HHHHHHHHHHHH----
T ss_pred             CCCCcEEEEEECCCChhHHHHhH-HHHHHHHH-CCCceEEEEecccc------------Cccc-HHHHHHHHHHHH----
Confidence            45799999999999999999964 56666664 56667788777531            1111 112222223321    


Q ss_pred             ccchhhhhhhhhcchh-----hhhhHHHHHHHhhc-CCCCCcc-ccccCcchhHHHHHHHHHhhhcCCCCeeeeEEEECC
Q 042427          105 VVQHFSFIHCVERLAL-----EKRQAEWINCFELT-KLGRVPI-DCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNN  177 (229)
Q Consensus       105 ~~~~~~fi~C~~~~~~-----~~~~~~~~~Ca~~~-gl~~~~I-~C~~~~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG  177 (229)
                      ....++|..=+.....     ..........++.. |++.+.+ .|.++......+.+..+....+  .++.+|+++|||
T Consensus        81 ~~~~~~~~~~lf~~~~~~~~~~~~~~~l~~~a~~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~--gv~gtPt~ving  158 (195)
T 2znm_A           81 SGLKYQANPAVFKAVYEQKIRLENRSVAGKWALSQKGFDGKKLMRAYDSPEAAAAALKMQKLTEQY--RIDSTPTVIVGG  158 (195)
T ss_dssp             HTCHHHHHHHHHHHHHHCSSCTTSHHHHHHHHHTCSSSCHHHHHHHHTSHHHHHHHHHHHHHHHHT--TCCSSSEEEETT
T ss_pred             cCcHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHc--CCCCCCeEEECC
Confidence            2344566555543211     01234566788899 9999888 9999888877777776666655  579999999999


Q ss_pred             ee
Q 042427          178 QP  179 (229)
Q Consensus       178 ~~  179 (229)
                      +.
T Consensus       159 ~~  160 (195)
T 2znm_A          159 KY  160 (195)
T ss_dssp             TE
T ss_pred             EE
Confidence            85

>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}

Probab=98.08  E-value=1.9e-05  Score=66.08  Aligned_cols=150  Identities=11%  Similarity=0.183  Sum_probs=98.8

Q ss_pred             CCCceEEEEEEEeCChhhHHHHHHhHHHHHHhcC--CCceeEEEEEeeeceecCCCceeeeCCchhhccchhhhhhhhhc
Q 042427           25 SSENVTVSVYYETLCPYCADFIVNHLVKLFQKGL--NSIVNLRMIPWGNSMMQPDGTFVCQHGPGECLLNTIEACTISIY  102 (229)
Q Consensus        25 ~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l--~~~vdl~lvP~G~a~~~~~~~f~CQHG~~EC~gN~~~aCai~~~  102 (229)
                      .+.+|.|.+|..-.||+|++|- ..+.|.+.+++  .+.|.+.+.+|-   .         |+... .+-..-.|+    
T Consensus        13 ~~a~vtivef~D~~Cp~C~~~~-~~~~~~l~~~~i~~g~v~~v~r~~p---l---------~~~s~-~aa~aa~~~----   74 (205)
T 3gmf_A           13 PAAKLRLVEFVSYTCPHCSHFE-IESEGQLKIGMVQPGKGAIEVRNFV---R---------DPIDM-TVALITNCV----   74 (205)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHH-HHHHHHHHHHTTTTTSEEEEEEECC---C---------SHHHH-HHHHHHHHS----
T ss_pred             CCCCeEEEEEECCCCHHHHHHH-HHHHHHHHHHhccCCeEEEEEEeCC---C---------CcchH-HHHHHHHhc----
Confidence            5679999999999999999996 46778776334  456777776662   1         21111 122222332    


Q ss_pred             CCccchhhhhhhhhcchhh------h-hh---------------------HHHHHHHhhcCCCCCcc-ccccCcchhHHH
Q 042427          103 PDVVQHFSFIHCVERLALE------K-RQ---------------------AEWINCFELTKLGRVPI-DCYRNGLGKLLE  153 (229)
Q Consensus       103 ~~~~~~~~fi~C~~~~~~~------~-~~---------------------~~~~~Ca~~~gl~~~~I-~C~~~~~G~~Ll  153 (229)
                       ++.++|+|..=++.....      . ..                     ......+...|+|.+.+ +|.++......+
T Consensus        75 -~~~~f~~~~~~Lf~~q~~~~~~~~~~~~~~~~~w~~~~~~~~l~~ia~~~~L~~~a~~~Gld~~~~~~~l~s~~~~~~v  153 (205)
T 3gmf_A           75 -PPSRFFTLHTAFMRSQAQWIGPLANSTEAQRQRWFNGTFATRTRAIASDFRFYDFMAARGMDRSTLDRCLSNEALAKKL  153 (205)
T ss_dssp             -CHHHHHHHHHHHHHTHHHHCHHHHHCCHHHHHTTSSSCHHHHHHHHHHHTTHHHHHHTTTCCHHHHHHHHTCHHHHHHH
T ss_pred             -CHhHHHHHHHHHHHcCHHHHhcccccchhhhhccccchhHHHHHhccCHHHHHHHHHHcCCCHHHHHHHHcCHHHHHHH
Confidence             456788888777643210      0 00                     12346778899999999 999988776666


Q ss_pred             HHHHHHh-hhcCCCCeeeeEEEECCeech--hhhhhHHHHHHHhh
Q 042427          154 QKYATET-AQLKPPHRFVPWVVVNNQPLQ--EDFMNFANHVCKAY  195 (229)
Q Consensus       154 ~~~~~~T-~~l~P~~~~VPwI~iNG~~~~--~~~~nl~~~VC~~y  195 (229)
                      .+..+.. ..+  .++-+|+++|||+.+.  ...+.|.+.|=...
T Consensus       154 ~~~~~~a~~~~--GV~GtPtfvvng~~~~G~~~~e~l~~~i~~~~  196 (205)
T 3gmf_A          154 AAETDEAINQY--NVSGTPSFMIDGILLAGTHDWASLRPQILARL  196 (205)
T ss_dssp             HHHHHHHHHHH--CCCSSSEEEETTEECTTCCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHc--CCccCCEEEECCEEEeCCCCHHHHHHHHHHHh
Confidence            6666555 554  4799999999999764  24567777665443

>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*

Probab=98.06  E-value=1.7e-05  Score=67.37  Aligned_cols=151  Identities=12%  Similarity=0.091  Sum_probs=96.4

Q ss_pred             CCCceEEEEEEEeCChhhHHHHHHhHHHHHHhcC--CCceeEEEEEeeeceecCCCceeeeCCchhhccchhhhhhhhhc
Q 042427           25 SSENVTVSVYYETLCPYCADFIVNHLVKLFQKGL--NSIVNLRMIPWGNSMMQPDGTFVCQHGPGECLLNTIEACTISIY  102 (229)
Q Consensus        25 ~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l--~~~vdl~lvP~G~a~~~~~~~f~CQHG~~EC~gN~~~aCai~~~  102 (229)
                      .+.+|.|..|..=.||+|++|-. .+.|.+.+++  .+.|.|.+.+|-- .            +.-=.+-..-.|+    
T Consensus        37 ~~A~vtIvef~Dy~CP~C~~~~~-~~~~~l~~~~~~~g~V~~v~~~~p~-~------------~~s~~Aa~aa~aa----   98 (226)
T 3f4s_A           37 PKAPILMIEYASLTCYHCSLFHR-NVFPKIKEKYIDTGKMLYIFRHFPL-D------------YRGLKAAMLSHCY----   98 (226)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHHH-HTHHHHHHHHTTTTSEEEEEEECCC-S------------HHHHHHHHHGGGC----
T ss_pred             CCCCEEEEEEECCCCHHHHHHHH-HHHHHHHHHcccCCeEEEEEEeCCC-C------------hhHHHHHHHHHHh----
Confidence            56799999999999999999954 4556554334  2356666655532 0            1101111222232    


Q ss_pred             CCccchhhhhhhhhcchhh------hhhHHHHHHHhhcCCCCCcc-ccccCcchhHHHHHHHHHhhh-cCCCCeeeeEEE
Q 042427          103 PDVVQHFSFIHCVERLALE------KRQAEWINCFELTKLGRVPI-DCYRNGLGKLLEQKYATETAQ-LKPPHRFVPWVV  174 (229)
Q Consensus       103 ~~~~~~~~fi~C~~~~~~~------~~~~~~~~Ca~~~gl~~~~I-~C~~~~~G~~Ll~~~~~~T~~-l~P~~~~VPwI~  174 (229)
                      .++.++|+|..=+......      ...+.....++..|+|.+.+ +|.++......+.+..+...+ +  .++.+|+++
T Consensus        99 ~~~~~f~~~~~aLF~~q~~~~~~~~~~~~~L~~iA~~~Gld~~~~~~~l~s~~~~~~v~~~~~~a~~~~--GV~GtPtfv  176 (226)
T 3f4s_A           99 EKQEDYFNFNKAVFNSIDSWNYYNLSDLTLLQRIAALSNLKQDAFNQCINDKKIMDKIVNDKSLAINKL--GITAVPIFF  176 (226)
T ss_dssp             CSHHHHHHHHHHHHHTGGGSCSSSTTCCHHHHHHHHHTTCCHHHHHHHHTCHHHHHHHHHHHHHHHHHH--CCCSSCEEE
T ss_pred             hChHHHHHHHHHHHHhCHhhcccccCcHHHHHHHHHHcCCCHHHHHHHHhCHHHHHHHHHHHHHHHHHc--CCCcCCEEE
Confidence            2445667776666543110      12345667899999999889 999988777777766666555 4  478999999


Q ss_pred             E---CCeech--hh--------hhhHHHHHHHhh
Q 042427          175 V---NNQPLQ--ED--------FMNFANHVCKAY  195 (229)
Q Consensus       175 i---NG~~~~--~~--------~~nl~~~VC~~y  195 (229)
                      |   ||+.+.  ..        .+.|.+.|=.+.
T Consensus       177 v~~~nG~~~~Ga~~~~~~G~~~~e~l~~~I~~~l  210 (226)
T 3f4s_A          177 IKLNDDKSYIEHNKVKHGGYKELKYFTNVIDKLY  210 (226)
T ss_dssp             EEECCTTCCCCGGGGEEESCCCHHHHHHHHHHHH
T ss_pred             EEcCCCEEeeCCCCcccccccCHHHHHHHHHHHH
Confidence            9   998753  23        566777665543

>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A

Probab=98.06  E-value=1.7e-05  Score=63.11  Aligned_cols=151  Identities=17%  Similarity=0.139  Sum_probs=87.2

Q ss_pred             CCceEEEEEEEeCChhhHHHHHHhHHHHHHhcCCCceeEEEEEeeeceecCCCceeeeCCchhhccchhhhhhhhhcCCc
Q 042427           26 SENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGNSMMQPDGTFVCQHGPGECLLNTIEACTISIYPDV  105 (229)
Q Consensus        26 ~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a~~~~~~~f~CQHG~~EC~gN~~~aCai~~~~~~  105 (229)
                      +.++.|..|..=.||.|++|- ..+.++.++ ..+.+.+.++|+--...           +..=..-+..+++... ...
T Consensus        20 ~~~~~vvEf~dy~Cp~C~~~~-~~~~~l~~~-~~~~~~~~~~~~~~~~~-----------~~~~~~a~a~~~~~~~-~~~   85 (184)
T 4dvc_A           20 SSSPVVSEFFSFYCPHCNTFE-PIIAQLKQQ-LPEGAKFQKNHVSFMGG-----------NMGQAMSKAYATMIAL-EVE   85 (184)
T ss_dssp             CSSCEEEEEECTTCHHHHHHH-HHHHHHHHT-SCTTCEEEEEECSSSSG-----------GGHHHHHHHHHHHHHH-TCH
T ss_pred             CCCCEEEEEECCCCHhHHHHh-HHHHHHHhh-cCCceEEEEEecCCCCC-----------chHHHHHHHHHHHHHc-CcH
Confidence            457788889999999999994 466666664 77667777766532110           0000011112222211 111


Q ss_pred             cchhh-hhhhh-hcchhhhhhHHHHHHHhhcCCCCCcc-ccccCcchhHHHHHHHHHhhhcCCCCeeeeEEEECCeec--
Q 042427          106 VQHFS-FIHCV-ERLALEKRQAEWINCFELTKLGRVPI-DCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQPL--  180 (229)
Q Consensus       106 ~~~~~-fi~C~-~~~~~~~~~~~~~~Ca~~~gl~~~~I-~C~~~~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~--  180 (229)
                      ..... +..=+ ..............=++..|+|.+.+ +|.++..-...+.+..+....+  .++.+|+++|||++.  
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~--gv~gTPtfiINGky~v~  163 (184)
T 4dvc_A           86 DKMVPVMFNRIHTLRKPPKDEQELRQIFLDEGIDAAKFDAAYNGFAVDSMVHRFDKQFQDS--GLTGVPAVVVNNRYLVQ  163 (184)
T ss_dssp             HHHHHHHHHHHHTSCCCCSSHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHH--TCCSSSEEEETTTEEEC
T ss_pred             HHHHHHHHHHHHHHhhccchHHHHHHHHHHhCCCHHHHHHHHhCHHHHHHHHHHHHHHHHc--CCCcCCEEEECCEEeeC
Confidence            11111 11111 11111112234455678899999999 9999887777777776666665  489999999999864  


Q ss_pred             h---hhhhhHHHHHH
Q 042427          181 Q---EDFMNFANHVC  192 (229)
Q Consensus       181 ~---~~~~nl~~~VC  192 (229)
                      .   ...++|.+.|=
T Consensus       164 ~~~~~s~e~~~~~i~  178 (184)
T 4dvc_A          164 GQSAKSLDEYFDLVN  178 (184)
T ss_dssp             GGGCSSHHHHHHHHH
T ss_pred             CcCCCCHHHHHHHHH
Confidence            1   13566776663

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=97.86  E-value=0.00011  Score=60.31  Aligned_cols=146  Identities=14%  Similarity=0.080  Sum_probs=88.1

Q ss_pred             CCCceEEEEEEEeCChhhHHHHHHhHHHHHHhcCCCceeEEEEEeeeceecCCCceeeeCCchhhccchhhhhhhhhcCC
Q 042427           25 SSENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGNSMMQPDGTFVCQHGPGECLLNTIEACTISIYPD  104 (229)
Q Consensus        25 ~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a~~~~~~~f~CQHG~~EC~gN~~~aCai~~~~~  104 (229)
                      ...+|.|..|+.-.||.|++|- ..|..+.+ .+.+.+.++.+|...            ||.. =...+.-.|+...-  
T Consensus        22 ~~~~v~vv~f~d~~Cp~C~~~~-~~l~~~~~-~~~~~v~~~~~p~~~------------~~~~-~~aa~a~~aa~~~g--   84 (193)
T 3hz8_A           22 QAGKVEVLEFFGYFCPHCAHLE-PVLSKHAK-SFKDDMYLRTEHVVW------------QKEM-LTLARLAAAVDMAA--   84 (193)
T ss_dssp             STTSEEEEEEECTTCHHHHHHH-HHHHHHHT-TCCTTEEEEEEECCC------------SGGG-HHHHHHHHHHHHHT--
T ss_pred             CCCCcEEEEEECCCChhHHHHH-HHHHHHHH-HCCCCeEEEEecCCC------------Cccc-HHHHHHHHHHHHcC--
Confidence            4569999999999999999994 34544444 466667777777542            1111 01122223332211  


Q ss_pred             ccchhh--hhhhhhc-----chhhhhhHHHHHHHhhc-CCCCCcc-ccccCcchhHHHHHHHHHhhhcCCCCeeeeEEEE
Q 042427          105 VVQHFS--FIHCVER-----LALEKRQAEWINCFELT-KLGRVPI-DCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVV  175 (229)
Q Consensus       105 ~~~~~~--fi~C~~~-----~~~~~~~~~~~~Ca~~~-gl~~~~I-~C~~~~~G~~Ll~~~~~~T~~l~P~~~~VPwI~i  175 (229)
                        .+++  +..=+..     .......+....-+... |+|.+.+ +|.++......+.+..+....+  .++.+|+++|
T Consensus        85 --~~~~~~~~~~lf~a~~~~~~~~~~~~~l~~~a~~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~--gv~gtPt~vv  160 (193)
T 3hz8_A           85 --ADSKDVANSHIFDAMVNQKIKLQNPEVLKKWLGEQTAFDGKKVLAAYESPESQARADKMQELTETF--QIDGVPTVIV  160 (193)
T ss_dssp             --GGGHHHHHHHHHHHHHTSCCCTTSHHHHHHHHHHCTTTTHHHHHHHHHSHHHHHHHHHHHHHHHHT--TCCSSSEEEE
T ss_pred             --chhHHhHHHHHHHHHHHhCcCCCCHHHHHHHHHHccCCCHHHHHHHHcCHHHHHHHHHHHHHHHHh--CCCcCCEEEE
Confidence              1122  2211111     10001234556778888 9999989 9999888777777777766665  4799999999


Q ss_pred             CCeech--hhhhhHHHHH
Q 042427          176 NNQPLQ--EDFMNFANHV  191 (229)
Q Consensus       176 NG~~~~--~~~~nl~~~V  191 (229)
                      ||+...  ...+.|.+.|
T Consensus       161 ng~~~~~~~~~e~l~~~i  178 (193)
T 3hz8_A          161 GGKYKVEFADWESGMNTI  178 (193)
T ss_dssp             TTTEEECCSSHHHHHHHH
T ss_pred             CCEEEecCCCHHHHHHHH
Confidence            998642  1344454444

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=97.77  E-value=0.00033  Score=55.69  Aligned_cols=140  Identities=14%  Similarity=0.138  Sum_probs=78.4

Q ss_pred             CCCceEEEEEEEeCChhhHHHHHHhHHHHHHhcC--CCceeEEEEEeeeceecCCCceeeeCCchhhccchhhhhhhhhc
Q 042427           25 SSENVTVSVYYETLCPYCADFIVNHLVKLFQKGL--NSIVNLRMIPWGNSMMQPDGTFVCQHGPGECLLNTIEACTISIY  102 (229)
Q Consensus        25 ~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l--~~~vdl~lvP~G~a~~~~~~~f~CQHG~~EC~gN~~~aCai~~~  102 (229)
                      .+.+|.|.+|+.-.||+|.+|.. .+.++.++ +  .+.+.|.++||.-..   . .      ..  .++..+.|+.  .
T Consensus        25 ~~a~v~i~~f~D~~Cp~C~~~~~-~~~~~~~~-~~~~~~v~~~~~~~~~~~---~-~------~~--~a~~~~~~~~--~   88 (175)
T 1z6m_A           25 SNAPVKMIEFINVRCPYCRKWFE-ESEELLAQ-SVKSGKVERIIKLFDKEK---E-S------LQ--RGNVMHHYID--Y   88 (175)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHHH-HHHHHHHH-HHHTTSEEEEEEECCCCS---T-T------TH--HHHHHHTTCC--T
T ss_pred             CCCCeEEEEEECCCCcchHHHHH-HHHHHHHH-HhhCCcEEEEEEeCCCCc---c-c------HH--HHHHHHHHHH--h
Confidence            46799999999999999999964 57776653 5  556888887775321   0 0      00  1223333321  1


Q ss_pred             CCccchhhhhhhhhcchhh----hhhHHHHHHHhhcCCCCCccccccCcchhHHHHHHHHHhhhcCCCCeeeeEEEECCe
Q 042427          103 PDVVQHFSFIHCVERLALE----KRQAEWINCFELTKLGRVPIDCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQ  178 (229)
Q Consensus       103 ~~~~~~~~fi~C~~~~~~~----~~~~~~~~Ca~~~gl~~~~I~C~~~~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~  178 (229)
                      .++.+.++|..=+......    +.....+-.++..|++.+.        ....+.+..+....+  .++.+|+++|||+
T Consensus        89 ~~~~~~~~~~~~lf~~~~~~~~~~~~~l~~~a~~~~Gld~~~--------~~~~~~~~~~~a~~~--gv~gtPt~vvng~  158 (175)
T 1z6m_A           89 SAPEQALSALHKMFATQDEWGNLTLEEVATYAEKNLGLKEQK--------DATLVSAVIAEANAA--HIQFVPTIIIGEY  158 (175)
T ss_dssp             TCHHHHHHHHHHHHHTHHHHTTSCHHHHHHHHHHTSCCCCCC--------CHHHHHHHHHHHHHH--TCCSSCEEEETTE
T ss_pred             cChHHHHHHHHHHHHcChhhccCCHHHHHHHHHHhcCCCccc--------CHHHHHHHHHHHHHc--CCCCcCeEEECCE
Confidence            2444556665555432110    1112222234567887641        123333344444433  5799999999998


Q ss_pred             ech--hhhhhHHHH
Q 042427          179 PLQ--EDFMNFANH  190 (229)
Q Consensus       179 ~~~--~~~~nl~~~  190 (229)
                      .+.  ...++|.+.
T Consensus       159 ~~~G~~~~~~l~~~  172 (175)
T 1z6m_A          159 IFDESVTEEELRGY  172 (175)
T ss_dssp             EECTTCCHHHHHHH
T ss_pred             EccCCCCHHHHHHH
Confidence            753  234455554

>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}

Probab=97.43  E-value=0.0013  Score=53.70  Aligned_cols=147  Identities=12%  Similarity=0.098  Sum_probs=88.4

Q ss_pred             CCCceEEEEEEEeCChhhHHHHHHhHHHHHHhcCCCceeEEEEEeeeceecCCCceeeeCCchhhccchhhhhhhhhc--
Q 042427           25 SSENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGNSMMQPDGTFVCQHGPGECLLNTIEACTISIY--  102 (229)
Q Consensus        25 ~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a~~~~~~~f~CQHG~~EC~gN~~~aCai~~~--  102 (229)
                      .+.+|.|.+|..=.||+|.+|. ..+.|.+++...+.|.|.+.+|--..          |...    -....+++...  
T Consensus        12 g~a~vtiv~f~D~~Cp~C~~~~-~~~~~~l~~~~~g~v~~v~r~~p~~~----------h~~s----~~aaraa~aa~~~   76 (182)
T 3gn3_A           12 GHGPRLFEVFLEPTCPFSVKAF-FKLDDLLAQAGEDNVTVRIRLQSQPW----------HMFS----GVIVRCILAAATL   76 (182)
T ss_dssp             ECCSEEEEEEECTTCHHHHHHH-TTHHHHHHHHCTTTEEEEEEECCCTT----------STTH----HHHHHHHHHHTTS
T ss_pred             CCCCEEEEEEECCCCHhHHHHH-HHHHHHHHHhCCCCEEEEEEEcCCCC----------CccH----HHHHHHHHHHHHh
Confidence            4779999999999999999995 46778776423566777766653210          2111    01122222211  


Q ss_pred             -CCccchhhhhhhhhcch--hh------------hhhHHHHHHHhhcCCCCCccccccCcchhHHHHHHHHHhhhcCCCC
Q 042427          103 -PDVVQHFSFIHCVERLA--LE------------KRQAEWINCFELTKLGRVPIDCYRNGLGKLLEQKYATETAQLKPPH  167 (229)
Q Consensus       103 -~~~~~~~~fi~C~~~~~--~~------------~~~~~~~~Ca~~~gl~~~~I~C~~~~~G~~Ll~~~~~~T~~l~P~~  167 (229)
                       +...++++|..-+....  ..            ++......-++..|+|.+.+  .++.+-..-+.+..+...++  .+
T Consensus        77 ~~~~~~f~~~~~aLf~~q~~~~~~~~~~~~~~~~~~~~~l~~~a~~~Gld~~~~--l~~~~~~~~v~~~~~~a~~~--GV  152 (182)
T 3gn3_A           77 EGGKESAKAVMTAVASHREEFEFEHHAGGPNLDATPNDIIARIERYSGLALAEA--FANPELEHAVKWHTKYARQN--GI  152 (182)
T ss_dssp             TTHHHHHHHHHHHHHHTGGGGSCBTTTBSGGGGCCHHHHHHHHHHHHTCCCHHH--HHCGGGHHHHHHHHHHHHHH--TC
T ss_pred             ccChHHHHHHHHHHHhcCcccccccccccccCCCCHHHHHHHHHHHhCCCHHHH--hcChHHHHHHHHHHHHHHHC--CC
Confidence             11256788877776432  10            12234567788899987765  44455544455544444444  57


Q ss_pred             eeeeEEEECCeech-----hhhhhHHHH
Q 042427          168 RFVPWVVVNNQPLQ-----EDFMNFANH  190 (229)
Q Consensus       168 ~~VPwI~iNG~~~~-----~~~~nl~~~  190 (229)
                      +-+|+++|||+.+.     ...+++.+.
T Consensus       153 ~gtPtf~ing~~~~~~s~~~~~e~w~~~  180 (182)
T 3gn3_A          153 HVSPTFMINGLVQPGMSSGDPVSKWVSD  180 (182)
T ss_dssp             CSSSEEEETTEECTTCCTTSCHHHHHHH
T ss_pred             CccCEEEECCEEccCCCCCCCHHHHHHH
Confidence            99999999999863     134555554

>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0

Probab=97.42  E-value=0.00034  Score=57.08  Aligned_cols=155  Identities=13%  Similarity=0.044  Sum_probs=90.1

Q ss_pred             CceEEEEEEEeCChhhHHHHHHh-HHHHHHhcCCCceeEEEEEeeeceecCCCceeeeCCchhhccchhhhhhhhhcCCc
Q 042427           27 ENVTVSVYYETLCPYCADFIVNH-LVKLFQKGLNSIVNLRMIPWGNSMMQPDGTFVCQHGPGECLLNTIEACTISIYPDV  105 (229)
Q Consensus        27 ~kV~V~vyyESlCPds~~Fi~~q-L~p~~~~~l~~~vdl~lvP~G~a~~~~~~~f~CQHG~~EC~gN~~~aCai~~~~~~  105 (229)
                      .++.|..|+.-.||.|++|-... +.+.+.+.+.+.+.|.++|+---  .+.+         + ..-+.-.|+... ...
T Consensus        14 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~s---------~-~aa~a~~aA~~~-g~~   80 (189)
T 3l9v_A           14 DAPAVVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQGSRMVKYHVSLL--GPLG---------H-ELTRAWALAMVM-KET   80 (189)
T ss_dssp             TCCSEEEEECTTCHHHHHHHHTSCHHHHHHTTCCTTCCEEEEECSSS--STTH---------H-HHHHHHHHHHHH-TCH
T ss_pred             CCCEEEEEECCCChhHHHHhHhccchHHHHHhCCCCCEEEEEechhc--cccc---------H-HHHHHHHHHHHc-CcH
Confidence            35678889999999999995421 34667655666677777776431  1110         0 111112233221 111


Q ss_pred             cchh-hhhhhhhcchhhhhhHHHHHHHhhc-CCCCCcc-ccccCcchhHHHHHHHHHhhhcCCCCeeeeEEEECCeec--
Q 042427          106 VQHF-SFIHCVERLALEKRQAEWINCFELT-KLGRVPI-DCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQPL--  180 (229)
Q Consensus       106 ~~~~-~fi~C~~~~~~~~~~~~~~~Ca~~~-gl~~~~I-~C~~~~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~--  180 (229)
                      .+.+ .+..=+...............++.. |+|.+.+ +|.++......+.+..+....+  .++.+|+++|||++.  
T Consensus        81 ~~~~~~lf~a~~~~~~~~~~~~l~~~a~~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~--gv~GtPt~~vng~~~v~  158 (189)
T 3l9v_A           81 DVIEKAFFTAGMVEKRLHSPDDVRRVFMSATGISRGEYDRSIKSPAVNDMVALQERLFKEY--GVRGTPSVYVRGRYHIN  158 (189)
T ss_dssp             HHHHHHHHHHHTTTCCCCSHHHHHHHHHHHHCCCHHHHHHHTTSHHHHHHHHHHHHHHHHT--TCCSSSEEEETTTEEEC
T ss_pred             HHHHHHHHHHHhhhccCCCHHHHHHHHHHccCCCHHHHHHHHhhHHHHHHHHHHHHHHHHh--CCCccCEEEECCEEEEC
Confidence            1111 1111111100011234566788899 9999989 9999988877777777766654  579999999999853  


Q ss_pred             hh---h------hhhHHHHHHHhhc
Q 042427          181 QE---D------FMNFANHVCKAYK  196 (229)
Q Consensus       181 ~~---~------~~nl~~~VC~~y~  196 (229)
                      ..   .      .++|.++|=....
T Consensus       159 ~~~~~~~~~~~~~~~~~~~i~~Li~  183 (189)
T 3l9v_A          159 NAAFGAFSVENFRSRYAAVVRKLLA  183 (189)
T ss_dssp             GGGCCCSSHHHHHHHHHHHHHHHHC
T ss_pred             ccccccccccchHHHHHHHHHHHHh
Confidence            11   1      1567776655443

>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}

Probab=97.36  E-value=0.00059  Score=55.91  Aligned_cols=164  Identities=13%  Similarity=0.120  Sum_probs=95.3

Q ss_pred             CceEEEEEEEeCChhhHHHHHHhHHHHHHhcCCC-ceeEEEEEeeeceecCCC--------------------ceeeeC-
Q 042427           27 ENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNS-IVNLRMIPWGNSMMQPDG--------------------TFVCQH-   84 (229)
Q Consensus        27 ~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~-~vdl~lvP~G~a~~~~~~--------------------~f~CQH-   84 (229)
                      ++++|++|+.-.||.|..+  .++.+.+.+ +.+ -++|+++||+-....+..                    ++.-.. 
T Consensus         6 ~~~~I~~f~D~~CP~C~~~--~~~~~~l~~-~~~~~v~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~a~~~g~~~~~~   82 (216)
T 2in3_A            6 EKPVLWYIADPMCSWCWGF--APVIENIRQ-EYSAFLTVKIMPGGLRPGTNTPLLPEKRAQILHHWHSVHITTGQPFTFE   82 (216)
T ss_dssp             CCCEEEEEECTTCHHHHHH--HHHHHHHHH-HHTTTCEEEEEECC----CCSBCCHHHHHHHHHHHHHHHHHHCCCCCCT
T ss_pred             cceeEEEEECCCCchhhcc--hHHHHHHHh-cCCCCeEEEEeecccccCCCCCCCHHHHHHHHHHHHHHHHHHCCccChH
Confidence            3689999999999999943  455555553 323 489999998754311100                    000000 


Q ss_pred             --Cchhhccchhhhhhhhhc-C--Cccchhhhhhhhhcchhh-----hhhHHHHHHHhhcCCCCCcc-ccccCcchhHHH
Q 042427           85 --GPGECLLNTIEACTISIY-P--DVVQHFSFIHCVERLALE-----KRQAEWINCFELTKLGRVPI-DCYRNGLGKLLE  153 (229)
Q Consensus        85 --G~~EC~gN~~~aCai~~~-~--~~~~~~~fi~C~~~~~~~-----~~~~~~~~Ca~~~gl~~~~I-~C~~~~~G~~Ll  153 (229)
                        -+..=..|...+..+-.. .  .....++|..=+......     +........++..|+|.+.+ +|.++.+.+..+
T Consensus        83 ~~~~~~~~~~s~~a~r~~~~a~~~~~~~~~~~~~~lf~a~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v  162 (216)
T 2in3_A           83 NALPEGFIYDTEPACRGVVSVSLIEPEKVFPFFAAIQRAFYVGQEDVAQLAILKKLAVDLGIPESRFTPVFQSDEAKQRT  162 (216)
T ss_dssp             TCSCTTCBCCCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHTTCCCTTSHHHHHHHHHHTTCCHHHHHHHHHSHHHHHHH
T ss_pred             HHccCCcccCcHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCHHHHHHHhcchHHHHHH
Confidence              011112344443322111 1  124556666655542111     12345667889999999888 999988877777


Q ss_pred             HHHHHHhhhcCCCCeeeeEEEE--CCee---ch--hhhhhHHHHHHHhh
Q 042427          154 QKYATETAQLKPPHRFVPWVVV--NNQP---LQ--EDFMNFANHVCKAY  195 (229)
Q Consensus       154 ~~~~~~T~~l~P~~~~VPwI~i--NG~~---~~--~~~~nl~~~VC~~y  195 (229)
                      .+..+....+  .++.+|+++|  ||+.   ..  ...+.|.+.+=...
T Consensus       163 ~~~~~~a~~~--gv~g~Pt~~i~~~G~~~~~~~G~~~~~~l~~~l~~~~  209 (216)
T 2in3_A          163 LAGFQRVAQW--GISGFPALVVESGTDRYLITTGYRPIEALRQLLDTWL  209 (216)
T ss_dssp             HHHHHHHHHT--TCCSSSEEEEEETTEEEEEESSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHc--CCcccceEEEEECCEEEEeccCCCCHHHHHHHHHHHH
Confidence            7776666654  5899999998  9985   21  23455666655443

>2imf_A HCCA isomerase, 2-hydroxychromene-2-carboxylate isomerase; glutathione, KGST, kappa GST, transferase; HET: GSH TOM CXS; 1.30A {Pseudomonas putida} PDB: 2ime_A* 2imd_A*

Probab=97.35  E-value=0.00076  Score=55.28  Aligned_cols=157  Identities=11%  Similarity=0.066  Sum_probs=96.1

Q ss_pred             eEEEEEEEeCChhhHHHHHHhHHHHHHhcCCCceeEEEEEee---eceec---CCC----------------------ce
Q 042427           29 VTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWG---NSMMQ---PDG----------------------TF   80 (229)
Q Consensus        29 V~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G---~a~~~---~~~----------------------~f   80 (229)
                      ++|++|+.-.||+|..+. ..|..+.+. ..  ++|++.||-   .....   ...                      ++
T Consensus         1 m~I~~~~D~~CP~cy~~~-~~l~~~~~~-~~--~~v~~~p~~L~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~a~~~G~   76 (203)
T 2imf_A            1 MIVDFYFDFLSPFSYLAN-QRLSKLAQD-YG--LTIRYNAIDLARVKIAIGNVGPSNRDLKVKLDYLKVDLQRWAQLYGI   76 (203)
T ss_dssp             CEEEEEECTTCHHHHHHH-HHHHHHHHH-HC--CEEEEEECCHHHHHHHHTCCSCCGGGCHHHHHHHHHHHHHHHHHHTC
T ss_pred             CeEEEEEeCCCHHHHHHH-HHHHHHHHH-cC--CeEEEEeeecchhhHhhCCCCcccccChHHHHHHHHHHHHHHHHcCC
Confidence            479999999999999884 456666653 32  778888872   11100   000                      01


Q ss_pred             eeeCCchhhccchhhhhhhhhc-CCccchhhhhhhhhcchhh-----hhhHHHHHHHhhcCCCCCcc-ccccCcchhHHH
Q 042427           81 VCQHGPGECLLNTIEACTISIY-PDVVQHFSFIHCVERLALE-----KRQAEWINCFELTKLGRVPI-DCYRNGLGKLLE  153 (229)
Q Consensus        81 ~CQHG~~EC~gN~~~aCai~~~-~~~~~~~~fi~C~~~~~~~-----~~~~~~~~Ca~~~gl~~~~I-~C~~~~~G~~Ll  153 (229)
                      .-.. +.  ..|...+..+-.. ..+.+.++|..=+......     +........+++.|+|.+.+ +|.++.+.+..+
T Consensus        77 ~~~~-~~--~~~t~~a~r~~~~a~~~g~~~~~~~~lf~a~~~~~~~i~~~~~L~~~a~~~Gld~~~~~~~~~s~~~~~~v  153 (203)
T 2imf_A           77 PLVF-PA--NYNSRRMNIGFYYSGAEAQAAAYVNVVFNAVWGEGIAPDLESLPALVSEKLGWDRSAFEHFLSSNAATERY  153 (203)
T ss_dssp             CCCC-CS--CCCCHHHHHHGGGCCSHHHHHHHHHHHHHHHHHSCCCTTCTTHHHHHHHHHTCCHHHHHHHHHSHHHHHHH
T ss_pred             CCCC-CC--CCChHHHHHHHHHHhCcChHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHcCCCHHHHHHHhcCHHHHHHH
Confidence            1111 11  4555555543322 2334456665555432111     12345567899999999889 999988887777


Q ss_pred             HHHHHHhhhcCCCCeeeeEEEECCeech--hhhhhHHHHHHHh
Q 042427          154 QKYATETAQLKPPHRFVPWVVVNNQPLQ--EDFMNFANHVCKA  194 (229)
Q Consensus       154 ~~~~~~T~~l~P~~~~VPwI~iNG~~~~--~~~~nl~~~VC~~  194 (229)
                      .+..++...+  .+.-+|+++|||+.+.  +..+.|.+.+-..
T Consensus       154 ~~~~~~a~~~--Gv~G~Ptfvi~g~~~~G~~~~~~l~~~l~~~  194 (203)
T 2imf_A          154 DEQTHAAIER--KVFGVPTMFLGDEMWWGNDRLFMLESAMGRL  194 (203)
T ss_dssp             HHHHHHHHHT--TCCSSSEEEETTEEEESGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHC--CCCcCCEEEECCEEEECCCCHHHHHHHHhcc
Confidence            7776666654  6899999999998652  3455666665543

>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A

Probab=97.33  E-value=0.00023  Score=57.15  Aligned_cols=65  Identities=12%  Similarity=0.088  Sum_probs=46.2

Q ss_pred             HHHHH----HhhcCCCCCcc-ccccCcchhHHHHHHHHHhhhcCCCCeeeeEEEECCeec-h----hhhhhHHHHHH
Q 042427          126 EWINC----FELTKLGRVPI-DCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQPL-Q----EDFMNFANHVC  192 (229)
Q Consensus       126 ~~~~C----a~~~gl~~~~I-~C~~~~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~-~----~~~~nl~~~VC  192 (229)
                      .....    ++..|+|.+.+ +|.+++.....+.+..+....+  .++.+||++|||+.. .    ...+.|.+.|=
T Consensus       116 ~l~~~~~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~--gv~gtPt~~ing~~~~~~~g~~~~~~l~~~i~  190 (195)
T 3c7m_A          116 DPAAFIKTGLDAAGMSQADFEAALKEPAVQETLEKWKASYDVA--KIQGVPAYVVNGKYLIYTKSIKSIDAMADLIR  190 (195)
T ss_dssp             CHHHHHHHHHHHHTCCHHHHHHHHTSHHHHHHHHHGGGHHHHH--HHHCSSEEEETTTEEECGGGCCCHHHHHHHHH
T ss_pred             HHHHHHHhHHHHcCCCHHHHHHHHcChHHHHHHHHHHHHHHHc--CCCccCEEEECCEEEeccCCCCCHHHHHHHHH
Confidence            45567    88899999889 9999887776666655554443  468999999999852 2    13456666553

>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A

Probab=97.31  E-value=0.00054  Score=56.25  Aligned_cols=137  Identities=16%  Similarity=0.105  Sum_probs=81.5

Q ss_pred             CCceEEEEEEEeCChhhHHHHHHhH--HHHHHhcCCCceeEEEEEeeeceecCCCceeee-CCchhhccc--hhhhhhhh
Q 042427           26 SENVTVSVYYETLCPYCADFIVNHL--VKLFQKGLNSIVNLRMIPWGNSMMQPDGTFVCQ-HGPGECLLN--TIEACTIS  100 (229)
Q Consensus        26 ~~kV~V~vyyESlCPds~~Fi~~qL--~p~~~~~l~~~vdl~lvP~G~a~~~~~~~f~CQ-HG~~EC~gN--~~~aCai~  100 (229)
                      ..++.|..|+.-.||.|.+|-. .|  .|.+.+.+.+-+.|.++|+.-..  +.+...-+ .--.+|.|.  +.+.=..+
T Consensus        20 ~~~~~vvef~d~~Cp~C~~~~~-~l~~~~~l~~~~~~~v~~~~~~~~~~~--~~s~~aa~a~~aA~~~g~~~~~~~~lf~   96 (191)
T 3l9s_A           20 AGEPQVLEFFSFYCPHCYQFEE-VLHVSDNVKKKLPEGTKMTKYHVEFLG--PLGKELTQAWAVAMALGVEDKVTVPLFE   96 (191)
T ss_dssp             CSSSCEEEEECTTCHHHHHHHH-TSCHHHHHHHHSCTTCCEEEEECSSSS--TTHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCChhHHHhCh-hccchHHHHHhCCCCcEEEEEeccccc--ccCHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence            3488999999999999999953 43  35565447666777777754211  01000000 000111111  11111111


Q ss_pred             hcCCccchhhhhhhhhcchhhhhhHHHHHHHhhcCCCCCcc-ccccCcchhHHHHHHHHHhhhcCCCCeeeeEEEECCee
Q 042427          101 IYPDVVQHFSFIHCVERLALEKRQAEWINCFELTKLGRVPI-DCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQP  179 (229)
Q Consensus       101 ~~~~~~~~~~fi~C~~~~~~~~~~~~~~~Ca~~~gl~~~~I-~C~~~~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~  179 (229)
                      .+            +.... .........-++..|+|.+.+ +|.++......+.+..+...++  .++.+|+++|||++
T Consensus        97 a~------------~~~~~-~~~~~~L~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~--gv~gtPtfvvnG~~  161 (191)
T 3l9s_A           97 AV------------QKTQT-VQSAADIRKVFVDAGVKGEDYDAAWNSFVVKSLVAQQEKAAADL--QLQGVPAMFVNGKY  161 (191)
T ss_dssp             HH------------HTSCC-CSSHHHHHHHHHHTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHT--TCCSSSEEEETTTE
T ss_pred             HH------------HhcCC-CCCHHHHHHHHHHcCCCHHHHHHHHhCHHHHHHHHHHHHHHHHh--CCcccCEEEECCEE
Confidence            10            11111 112345667888999999889 9999888777777777776665  58999999999986


Q ss_pred             c
Q 042427          180 L  180 (229)
Q Consensus       180 ~  180 (229)
                      .
T Consensus       162 ~  162 (191)
T 3l9s_A          162 Q  162 (191)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}

Probab=96.84  E-value=0.005  Score=50.49  Aligned_cols=164  Identities=10%  Similarity=0.047  Sum_probs=96.8

Q ss_pred             eEEEEEEEeCChhhHHHHHHhHHHHHHhcCCCceeEEEEEeeeceecCCC--------------------ceeeeCCch-
Q 042427           29 VTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGNSMMQPDG--------------------TFVCQHGPG-   87 (229)
Q Consensus        29 V~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a~~~~~~--------------------~f~CQHG~~-   87 (229)
                      ++|++|+.-.||.|-.+ ...|..+.+. +.+-++|+++||+-....+..                    ++.-...+. 
T Consensus         3 ~~I~~~~D~~CP~cy~~-~~~l~~l~~~-~~~~v~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~r~a~~~G~~f~~~~~~   80 (208)
T 3kzq_A            3 IKLYYVHDPMCSWCWGY-KPTIEKLKQQ-LPGVIQFEYVVGGLAPDTNLPMPPEMQQKLEGIWKQIETQLGTKFNYDFWK   80 (208)
T ss_dssp             EEEEEEECTTCHHHHHH-HHHHHHHHHH-SCTTSEEEEEECCSSCSCCCBCCHHHHHHHHHHHHHHHHHHCCCCCTTHHH
T ss_pred             eEEEEEECCCCchhhhh-hHHHHHHHHh-CCCCceEEEEecccccCCCCCCCHHHHHHHHHHHHHHHHHHCCcccHHHHh
Confidence            68999999999999966 3456566553 667799999998743211000                    000011000 


Q ss_pred             --hhccchhhhhhhhhc-CCccchhhhhhhhhcchh-----hhhhHHHHHHHhhcCCCCCcc-ccccCcchhHHHHHHHH
Q 042427           88 --ECLLNTIEACTISIY-PDVVQHFSFIHCVERLAL-----EKRQAEWINCFELTKLGRVPI-DCYRNGLGKLLEQKYAT  158 (229)
Q Consensus        88 --EC~gN~~~aCai~~~-~~~~~~~~fi~C~~~~~~-----~~~~~~~~~Ca~~~gl~~~~I-~C~~~~~G~~Ll~~~~~  158 (229)
                        .=..|...++-+-.. ......++|..=+.....     .+..+.....+++.|+|.+.+ ++.++...+..+.+..+
T Consensus        81 ~~~~~~~s~~a~r~~~aa~~~g~~~~~~~~l~~a~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~~~  160 (208)
T 3kzq_A           81 LCTPVRSTYQSCRAVIAAGFQDSYEQMLEAIQHAYYLRAMPPHEEATHLQLAKEIGLNVQQFKNDMDGTLLEGVFQDQLS  160 (208)
T ss_dssp             HSCCBCCCHHHHHHHHHHHTTTCHHHHHHHHHHHHHTSCCCTTCHHHHHHHHHHTTCCHHHHHHHHTSHHHHHHHHHHHH
T ss_pred             cCCCcCCcHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHH
Confidence              001233333322111 122234555555543211     122345667899999999988 99999888787777777


Q ss_pred             HhhhcCCCCeeeeEEEEC--Ceec----h-hhhhhHHHHHHHhhc
Q 042427          159 ETAQLKPPHRFVPWVVVN--NQPL----Q-EDFMNFANHVCKAYK  196 (229)
Q Consensus       159 ~T~~l~P~~~~VPwI~iN--G~~~----~-~~~~nl~~~VC~~y~  196 (229)
                      ....+  .++-+||++||  |+..    + ...+.|.+.+=....
T Consensus       161 ~a~~~--gv~g~Pt~~v~~~~~~~~~~~g~~~~e~~~~~i~~~~~  203 (208)
T 3kzq_A          161 LAKSL--GVNSYPSLVLQINDAYFPIEVDYLSTEPTLKLIRERII  203 (208)
T ss_dssp             HHHHT--TCCSSSEEEEEETTEEEEECCCSSCSHHHHHHHHHHHH
T ss_pred             HHHHc--CCCcccEEEEEECCEEEEeeCCCCCHHHHHHHHHHHHh
Confidence            77665  57999999996  4432    1 234566666655443

>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0

Probab=96.53  E-value=0.0085  Score=48.61  Aligned_cols=144  Identities=10%  Similarity=0.090  Sum_probs=79.9

Q ss_pred             CceEEEEEEEeCChhhHHHHHHhHHHHHHhcCCCceeEEEEEeeeceecCCCceeeeCCchhhccchhhhhhhhhcCCcc
Q 042427           27 ENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGNSMMQPDGTFVCQHGPGECLLNTIEACTISIYPDVV  106 (229)
Q Consensus        27 ~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a~~~~~~~f~CQHG~~EC~gN~~~aCai~~~~~~~  106 (229)
                      +++.|..|+.-.||.|.+|-  ...+-+.+.+ + +.|..+|...            |+..+ ..-+.-..+-.... ..
T Consensus        22 ~~~~vvef~d~~Cp~C~~~~--~~~~~~~~~~-~-v~~~~~p~~~------------~~~~~-~aa~a~~Aa~~q~g-~~   83 (185)
T 3feu_A           22 GMAPVTEVFALSCGHCRNME--NFLPVISQEA-G-TDIGKMHITF------------NQSAH-IASMFYYAAEMQVD-GA   83 (185)
T ss_dssp             CCCSEEEEECTTCHHHHHHG--GGHHHHHHHH-T-SCCEEEECCS------------SSHHH-HHHHHHHHHHTTSS-SS
T ss_pred             CCCEEEEEECCCChhHHHhh--HHHHHHHHHh-C-CeEEEEeccC------------Cccch-HHHHHHHHHHHHhC-Cc
Confidence            67889999999999999993  3444443334 3 5666666421            11111 01111111211111 01


Q ss_pred             chhhhhhhhhcchh-------hhhhHHHHHHHhhcCC-CCCcc-ccccCcchhHHHHHHHHHhhhcCCCCeeeeEEEECC
Q 042427          107 QHFSFIHCVERLAL-------EKRQAEWINCFELTKL-GRVPI-DCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNN  177 (229)
Q Consensus       107 ~~~~fi~C~~~~~~-------~~~~~~~~~Ca~~~gl-~~~~I-~C~~~~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG  177 (229)
                      ..+++..=+.....       ..........+...|+ |.+.+ .+..+ .....+.+..+...++  .++.+|+++|||
T Consensus        84 ~~~~~~~~lf~a~~~~~~~~~~~~~~~L~~~a~~~Gl~d~~~~~~~~~~-~~~~~v~~~~~~a~~~--gv~GtPtfvvng  160 (185)
T 3feu_A           84 PDHAFMEDLFAATQMGEGTTLTEQQEAYSKAFTSRGLVSPYDFNEEQRD-TLIKKVDNAKMLSEKS--GISSVPTFVVNG  160 (185)
T ss_dssp             CCHHHHHHHHHHHTCCTTSCHHHHHHHHHHHHHTTTCCCGGGCCHHHHH-HHHHHHHHHHHHHHHH--TCCSSSEEEETT
T ss_pred             hHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHc--CCCccCEEEECC
Confidence            12333333322110       1123456678999998 99988 88876 4445555555555554  579999999999


Q ss_pred             eech-----hhhhhHHHHH
Q 042427          178 QPLQ-----EDFMNFANHV  191 (229)
Q Consensus       178 ~~~~-----~~~~nl~~~V  191 (229)
                      ++..     ...+.|.+.|
T Consensus       161 ~~~v~~~Ga~~~e~~~~~i  179 (185)
T 3feu_A          161 KYNVLIGGHDDPKQIADTI  179 (185)
T ss_dssp             TEEECGGGCSSHHHHHHHH
T ss_pred             EEEEecCCCCCHHHHHHHH
Confidence            8631     1345666655

>3gl5_A Putative DSBA oxidoreductase SCO1869; probable DSBA oxidoreductase structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Streptomyces coelicolor A3}

Probab=96.15  E-value=0.05  Score=45.98  Aligned_cols=166  Identities=12%  Similarity=0.103  Sum_probs=103.9

Q ss_pred             CceEEEEEEEeCChhhHHHHHHhHHHHHHhcCC--CceeEEEEEeeec-eecCCC-------------------------
Q 042427           27 ENVTVSVYYETLCPYCADFIVNHLVKLFQKGLN--SIVNLRMIPWGNS-MMQPDG-------------------------   78 (229)
Q Consensus        27 ~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~--~~vdl~lvP~G~a-~~~~~~-------------------------   78 (229)
                      .|++|++|+.-.||.|--.. ..|..+.+. +.  .-++|++.||.-. .....+                         
T Consensus         1 ~~~~I~~~~D~~cPwcyig~-~~l~~a~~~-~~~~~~v~v~~~P~~L~p~~~~~g~~~~~~~~~~k~g~~~~~~~~~~~~   78 (239)
T 3gl5_A            1 GHMRVEIWSDIACPWCYVGK-ARFEKALAA-FPHRDGVEVVHRSFELDPGRAKDDVQPVLTMLTAKYGMSQEQAQAGEDN   78 (239)
T ss_dssp             -CEEEEEEECSSCHHHHHHH-HHHHHHHHT-CTTGGGEEEEEEECCSCTTCCTTCCEEHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             CCeEEEEEEeCcCHhHHHHH-HHHHHHHHh-cCccCceEEEEEEeccccCCCCCCCCCHHHHHHHhhCCCHHHHHHHHHH
Confidence            37899999999999998664 467777663 54  4689999999521 111000                         


Q ss_pred             --------ceeeeCCchhhccchhhhhhhhhc-CCccchhhhhhhhhcchh-----hhh-hHHHHHHHhhcCCCCCcc-c
Q 042427           79 --------TFVCQHGPGECLLNTIEACTISIY-PDVVQHFSFIHCVERLAL-----EKR-QAEWINCFELTKLGRVPI-D  142 (229)
Q Consensus        79 --------~f~CQHG~~EC~gN~~~aCai~~~-~~~~~~~~fi~C~~~~~~-----~~~-~~~~~~Ca~~~gl~~~~I-~  142 (229)
                              ++.=...+ -=..|...++-+-.. ......++|+.=+.....     .+. .+.....++..|+|.+.+ +
T Consensus        79 ~~r~a~~~Gl~f~~~~-~~~~nt~~a~r~~~~A~~~g~~~~~~~alf~a~~~~g~~i~d~~~~L~~~a~~~Gld~~~~~~  157 (239)
T 3gl5_A           79 LGAQAAAEGLAYRTRD-RDHGSTFDLHRLLHLAKERGRHEALLDAFYRGNFADERSVFNDDERLVELAVGAGLDAEEVRA  157 (239)
T ss_dssp             HHHHHHHTTCCCCCSS-CEECCCHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCSSCCSSCHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHcCCCccCCC-CCCCChHHHHHHHHHHHhhCcHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCHHHHHH
Confidence                    11111110 012455555533221 123345555554443211     123 445667899999999988 9


Q ss_pred             cccC-cchhHHHHHHHHHhhhcCCCCeeeeEEEECCee-ch--hhhhhHHHHHHHhhcC
Q 042427          143 CYRN-GLGKLLEQKYATETAQLKPPHRFVPWVVVNNQP-LQ--EDFMNFANHVCKAYKG  197 (229)
Q Consensus       143 C~~~-~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~-~~--~~~~nl~~~VC~~y~g  197 (229)
                      +.++ .+.+..+.+..++...+  .+.-|||++|||++ +.  ...+.|.+.+=+....
T Consensus       158 ~l~s~~~~~~~v~~~~~~a~~~--Gv~GvPtfvv~g~~~v~Ga~~~e~~~~~i~~~~~~  214 (239)
T 3gl5_A          158 VLADPAAYADEVRADEREAAQL--GATGVPFFVLDRAYGVSGAQPAEVFTQALTQAWGE  214 (239)
T ss_dssp             HHHCTTTTHHHHHHHHHHHHHT--TCCSSSEEEETTTEEEESSCCHHHHHHHHHHHHHT
T ss_pred             HHcCcHhHHHHHHHHHHHHHHC--CCCeeCeEEECCcEeecCCCCHHHHHHHHHHHHhh
Confidence            9999 88888777777776655  58999999999984 32  2456777777776664

>3fz5_A Possible 2-hydroxychromene-2-carboxylate isomeras; 2-hydroxychromene-2-carboxylate ISO structural genomics, PSI-2; HET: MSE GSH PGE; 2.40A {Rhodobacter sphaeroides 2}

Probab=94.59  E-value=0.037  Score=45.23  Aligned_cols=159  Identities=11%  Similarity=0.074  Sum_probs=94.3

Q ss_pred             CCceEEEEEEEeCChhhHHHHHHhHHHHHHhcCCCceeEEEEEe--eeceec-CCC-----------------------c
Q 042427           26 SENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPW--GNSMMQ-PDG-----------------------T   79 (229)
Q Consensus        26 ~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~--G~a~~~-~~~-----------------------~   79 (229)
                      +.+++|++|+.-.||.|--.. ..|..+... .  -++|++.||  |..... .+.                       +
T Consensus         2 ~~~~~I~~~~D~~cPwcyi~~-~~l~~~~~~-~--~~~v~~~p~~L~~~~~~~g~~~~~~~~~k~~~~~~~~~r~a~~~G   77 (202)
T 3fz5_A            2 NAMNPIEFWFDFSSGYAFFAA-QRIEALAAE-L--GRTVLWRPYMLGAAFSVTGARGLSSTPLKRDYAQRDWARIARQRG   77 (202)
T ss_dssp             -CCSCEEEEECTTCHHHHHHH-TTHHHHHHH-H--TCCEEEEECTTC----------CCSHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCceeEEEEeCCCHHHHHHH-HHHHHHHHH-h--CCeEEEEeeeccchhhhcCCCCcccCcHHHHHHHHHHHHHHHHhC
Confidence            456789999999999998663 456665553 2  378899997  322110 000                       1


Q ss_pred             eeeeCCchhhccchhhhhhhhhc-C--Cccchhhhhhhhhcchh-----hhhhHHHHHHHhhcCCCCCcc-ccccCcchh
Q 042427           80 FVCQHGPGECLLNTIEACTISIY-P--DVVQHFSFIHCVERLAL-----EKRQAEWINCFELTKLGRVPI-DCYRNGLGK  150 (229)
Q Consensus        80 f~CQHG~~EC~gN~~~aCai~~~-~--~~~~~~~fi~C~~~~~~-----~~~~~~~~~Ca~~~gl~~~~I-~C~~~~~G~  150 (229)
                      +.-.. +..=-.|...++-+-.. .  ...+..+|+.=+.....     .+..+.....+++.|+|.+.+ ++.++++.+
T Consensus        78 ~~f~~-~~~~~~~t~~a~r~~~~a~~~g~~~~~~~~~alf~a~~~~g~~i~~~~~L~~~a~~~Gld~~~~~~~~~s~~~~  156 (202)
T 3fz5_A           78 LTFRP-PADHPHVALAATRAFYWIEAQSPDAATAFAQRVFDLYFSDRLDTASPEAVSRLGPEVGLEPEALLAGIADPALK  156 (202)
T ss_dssp             CCCCC-CTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTCCCTTCHHHHHTTHHHHTCCHHHHHHHTTCHHHH
T ss_pred             CCCCC-CCCCCCChHHHHHHHHHHHhhCchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCHHHHHHHhcCHHHH
Confidence            11111 11111355555532221 1  11245555555543211     122345668899999999888 999998888


Q ss_pred             HHHHHHHHHhhhcCCCCeeeeEEEECCeec-h-hhhhhHHHHH
Q 042427          151 LLEQKYATETAQLKPPHRFVPWVVVNNQPL-Q-EDFMNFANHV  191 (229)
Q Consensus       151 ~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~-~-~~~~nl~~~V  191 (229)
                      ..+.+..++...+  .+.-|||++|||+.. + +..+.|...+
T Consensus       157 ~~v~~~~~~a~~~--Gv~GvPtfvv~g~~~~G~~~~~~l~~~l  197 (202)
T 3fz5_A          157 ETVRKIGEDAVAR--GIFGSPFFLVDDEPFWGWDRMEMMAEWI  197 (202)
T ss_dssp             HHHHHHHHHHHHT--TCCSSSEEEETTEEEESGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHC--CCCcCCEEEECCEEEecCCCHHHHHHHH
Confidence            8888877777665  589999999999865 2 2344555444

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=92.04  E-value=0.096  Score=42.99  Aligned_cols=54  Identities=17%  Similarity=0.116  Sum_probs=44.2

Q ss_pred             HHHHHHHhhcCCCCCcc-ccccCcchhHHHHHHHHHhhhcCCCCeeeeEEEECCeec
Q 042427          125 AEWINCFELTKLGRVPI-DCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQPL  180 (229)
Q Consensus       125 ~~~~~Ca~~~gl~~~~I-~C~~~~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~  180 (229)
                      ......+...|+|.+.+ .|.++......+.+..+....+  .++.||+++|||++.
T Consensus         7 ~~L~~~a~~~Gld~~~~~~~l~s~~~~~~v~~~~~~a~~~--gi~gvP~fvingk~~   61 (197)
T 1un2_A            7 SDIRDVFINAGIKGEEYDAAWNSFVVKSLVAQQEKAAADV--QLRGVPAMFVNGKYQ   61 (197)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHTSHHHHHHHHHHHHHHHHT--TCCSSSEEEETTTEE
T ss_pred             HHHHHHHHHcCCCHHHHHHHHhCHHHHHHHHHHHHHHHHc--CCCcCCEEEEcceEe
Confidence            45667889999999999 9999988888887777666654  578899999999864

>1r4w_A Glutathione S-transferase, mitochondrial; glutathione transferase, kappa GST, RGSTK1-1; HET: GSH; 2.50A {Rattus norvegicus} SCOP: c.47.1.13

Probab=89.92  E-value=0.19  Score=41.57  Aligned_cols=164  Identities=10%  Similarity=0.012  Sum_probs=91.3

Q ss_pred             ceEEEEEEEeCChhhHHHHHHhHHHHHHhcCCCceeEEEEEee--ec-eecCC-----------------------Ccee
Q 042427           28 NVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWG--NS-MMQPD-----------------------GTFV   81 (229)
Q Consensus        28 kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G--~a-~~~~~-----------------------~~f~   81 (229)
                      +++|++|+.-.||.|-.+. ..|..+.+. .  -++|++.||-  .. ....+                       .++.
T Consensus         5 ~~~I~~~~D~~CP~Cy~~~-~~l~~l~~~-~--~~~v~~~p~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~r~a~~~G~~   80 (226)
T 1r4w_A            5 PRVLELFYDVLSPYSWLGF-EVLCRYQHL-W--NIKLKLRPALLAGIMKDSGNQPPAMVPHKGQYILKEIPLLKQLFQVP   80 (226)
T ss_dssp             CEEEEEEECTTCHHHHHHH-HHHHHHTTT-S--SEEEEEEECCHHHHHHHTTCCCTTSSHHHHHHHHHHHHHHHHHHTCC
T ss_pred             CceEEEEEeCCChHHHHHH-HHHHHHHHH-c--CCeEEEEeeecccchhccCCCCcccChHHHHHHHHHHHHHHHHhCCC
Confidence            5789999999999998773 345444332 3  3788888872  10 00000                       0011


Q ss_pred             eeCCch--h--hccchhhhhhhhhcC---Cccchhhhhhhhhcchh-----hhhhHHHHHHHhhcCCCCC---cc-cccc
Q 042427           82 CQHGPG--E--CLLNTIEACTISIYP---DVVQHFSFIHCVERLAL-----EKRQAEWINCFELTKLGRV---PI-DCYR  145 (229)
Q Consensus        82 CQHG~~--E--C~gN~~~aCai~~~~---~~~~~~~fi~C~~~~~~-----~~~~~~~~~Ca~~~gl~~~---~I-~C~~  145 (229)
                      -...+.  .  =..|...+..+-..-   .....++|..=+.....     -+........++..|++.+   .+ ++.+
T Consensus        81 ~~~~~~~~~~~~~~~s~~a~r~~~aa~~~g~~~~~~~~~alf~a~~~~~~~i~~~~~L~~~a~~~Gl~~~d~~~~~~~~~  160 (226)
T 1r4w_A           81 MSVPKDFFGEHVKKGTVNAMRFLTAVSMEQPEMLEKVSRELWMRIWSRDEDITESQNILSAAEKAGMATAQAQHLLNKIS  160 (226)
T ss_dssp             CCCCSSTTTHHHHHCSHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHTSCCCCSSHHHHHHHHHHTTCCHHHHHHHHTTTT
T ss_pred             CCCCCccccccCCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCchhHHHHHHHcC
Confidence            111110  0  012334333222110   12223455443432111     1123456678999999654   56 8888


Q ss_pred             CcchhHHHHHHHHHhhhcCCCCeeeeEEEEC----Ceec-h-hhhhhHHHHHHHhhcC
Q 042427          146 NGLGKLLEQKYATETAQLKPPHRFVPWVVVN----NQPL-Q-EDFMNFANHVCKAYKG  197 (229)
Q Consensus       146 ~~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iN----G~~~-~-~~~~nl~~~VC~~y~g  197 (229)
                      +.+.+..+.+..++...+  .+.-|||++||    |+.. + +..+.|...+=..+.|
T Consensus       161 s~~~~~~v~~~~~~a~~~--gv~G~Ptfvv~~~g~~~~~~G~~~~~~l~~~l~~~~~~  216 (226)
T 1r4w_A          161 TELVKSKLRETTGAACKY--GAFGLPTTVAHVDGKTYMLFGSDRMELLAYLLGEKWMG  216 (226)
T ss_dssp             SHHHHHHHHHHHHHHHHT--TCCSSCEEEEEETTEEEEEESTTCHHHHHHHHTCCCCC
T ss_pred             CHHHHHHHHHHHHHHHHC--CCCCCCEEEEeCCCCcCceeCCCcHHHHHHHhcCcccC
Confidence            888877777776666654  58999999999    6654 2 2355666666556666

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=87.94  E-value=0.78  Score=38.38  Aligned_cols=42  Identities=29%  Similarity=0.560  Sum_probs=33.5

Q ss_pred             CCCceEEEEEEEeCChhhHHHHHHhHHHHHHhcCCCceeEEEEEee
Q 042427           25 SSENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWG   70 (229)
Q Consensus        25 ~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G   70 (229)
                      .+.++.|.+|..-.||+|++|.. +|.+..++   +.+.|.++||+
T Consensus        95 ~~ak~~v~~F~D~~Cp~C~~~~~-~l~~~~~~---g~v~v~~~~~p  136 (241)
T 1v58_A           95 KDAPVIVYVFADPFCPYCKQFWQ-QARPWVDS---GKVQLRTLLVG  136 (241)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHHH-HHHHHHHT---TSEEEEEEECC
T ss_pred             CCCCeEEEEEECCCChhHHHHHH-HHHHHHhC---CcEEEEEEECC
Confidence            46789999999999999999964 67776663   35788888875

>3rpp_A Glutathione S-transferase kappa 1; glutathione transferase, kappa GST, TRX domain, GSH binding, detoxification, APO form; 1.80A {Homo sapiens} PDB: 3rpn_A 1yzx_A*

Probab=86.95  E-value=0.61  Score=38.96  Aligned_cols=165  Identities=13%  Similarity=0.065  Sum_probs=92.2

Q ss_pred             CceEEEEEEEeCChhhHHHHHHhHHHHHHhcCCCceeEEEEEe--eecee----cCCC--------------------ce
Q 042427           27 ENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPW--GNSMM----QPDG--------------------TF   80 (229)
Q Consensus        27 ~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~--G~a~~----~~~~--------------------~f   80 (229)
                      .+.+|++|+.-.||.|--.. ..|..+.+. .  -++|++.||  |....    .+..                    ++
T Consensus         4 ~~~~I~~~~D~~CPwcyi~~-~~L~~~~~~-~--~v~v~~~p~~L~~~~~~~g~~~~~~~~~k~~y~~~~~~r~a~~~G~   79 (234)
T 3rpp_A            4 LPRTVELFYDVLSPYSWLGF-EILCRYQNI-W--NINLQLRPSLITGIMKDSGNKPPGLLPRKGLYMANDLKLLRHHLQI   79 (234)
T ss_dssp             CCEEEEEEECTTCHHHHHHH-HHHHHHTTT-S--SEEEEEEECCHHHHCC----CCCSSSCHHHHHHHHHHHHHHHHHTC
T ss_pred             CCceEEEEEeCCCHHHHHHH-HHHHHHHHH-c--CCeEEEEEeecchhhhhcCCCCcccChHHHHHHHHHHHHHHHHhCC
Confidence            56899999999999998653 344444332 2  378999998  32110    0000                    11


Q ss_pred             eeeCCc--hh--hccchhhhhhhhhc-C--Cccchhhhhhhhhcchh-----hhhhHHHHHHHhhcCCCC---Ccc-ccc
Q 042427           81 VCQHGP--GE--CLLNTIEACTISIY-P--DVVQHFSFIHCVERLAL-----EKRQAEWINCFELTKLGR---VPI-DCY  144 (229)
Q Consensus        81 ~CQHG~--~E--C~gN~~~aCai~~~-~--~~~~~~~fi~C~~~~~~-----~~~~~~~~~Ca~~~gl~~---~~I-~C~  144 (229)
                      .-...+  ..  -..|...++-+-.. .  ......+++.=+.....     .+..+.....+++.|+|.   +.+ +-+
T Consensus        80 ~f~~~~~~~~~~~~~nt~~a~r~~~aa~~~~~~~~~~~~~al~~A~~~~g~di~d~~~L~~~a~~~GLd~~~~~~~l~~~  159 (234)
T 3rpp_A           80 PIHFPKDFLSVMLEKGSLSAMRFLTAVNLEHPEMLEKASRELWMRVWSRNEDITEPQSILAAAEKAGMSAEQAQGLLEKI  159 (234)
T ss_dssp             CCCCCSSCHHHHHHHCSHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHTSCCCCSSHHHHHHHHHHTTCCHHHHHHHHTTT
T ss_pred             CCCCCCCCcccccCCCCHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence            111100  00  00144444432211 0  12334455444432111     123355678899999998   455 666


Q ss_pred             cCcchhHHHHHHHHHhhhcCCCCeeeeEEEEC--Ce-e-c-h-hhhhhHHHHHHHhhcC
Q 042427          145 RNGLGKLLEQKYATETAQLKPPHRFVPWVVVN--NQ-P-L-Q-EDFMNFANHVCKAYKG  197 (229)
Q Consensus       145 ~~~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iN--G~-~-~-~-~~~~nl~~~VC~~y~g  197 (229)
                      ++++.++.+.+..++..++  .+.-|||++||  |+ . . + +..+.|...+=+.+.|
T Consensus       160 ~s~~~~~~l~~~~~~a~~~--Gv~GvPtfvv~~~g~~~~f~G~drl~~l~~~L~~~~~~  216 (234)
T 3rpp_A          160 ATPKVKNQLKETTEAACRY--GAFGLPITVAHVDGQTHMLFGSDRMELLAHLLGEKWMG  216 (234)
T ss_dssp             TSHHHHHHHHHHHHHHHHT--TCSSSCEEEEEETTEEEEEESSSCHHHHHHHHTCCCCC
T ss_pred             cCHHHHHHHHHHHHHHHHc--CCCCCCEEEEeCCCCcCceeCccCHHHHHHHhccccCC
Confidence            7888888887777777765  68999999995  75 2 2 2 3345566555445555

>3tdg_A DSBG, putative uncharacterized protein; thioredoxin fold, reductase, oxidoreductase; HET: P6G; 2.10A {Helicobacter pylori}

Probab=83.46  E-value=1.2  Score=38.82  Aligned_cols=40  Identities=18%  Similarity=0.438  Sum_probs=32.8

Q ss_pred             CCceEEEEEEEeCChhhHHHHHHhHHHHHHhcCCCceeEEEEEeee
Q 042427           26 SENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGN   71 (229)
Q Consensus        26 ~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~   71 (229)
                      +.+..|.+|..-.||+|+++. .+|.+.+++     ++|++++|+-
T Consensus       146 ~gk~~I~vFtDp~CPYCkkl~-~~l~~~l~~-----~~Vr~i~~Pi  185 (273)
T 3tdg_A          146 NKDKILYIVSDPMCPHCQKEL-TKLRDHLKE-----NTVRMVVVGW  185 (273)
T ss_dssp             GTTCEEEEEECTTCHHHHHHH-HTHHHHHHH-----CEEEEEECCC
T ss_pred             CCCeEEEEEECcCChhHHHHH-HHHHHHhhC-----CcEEEEEeec
Confidence            578899999999999999995 578876653     6888888663

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	229
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	98.18
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	97.66
d1fvka_	188	Disulfide-bond formation facilitator (DsbA) {Esche	97.35
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	95.79
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	93.45
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	86.33

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=98.18  E-value=4.3e-06  Score=64.67  Aligned_cols=152  Identities=17%  Similarity=0.154  Sum_probs=90.0

Q ss_pred             CCCceEEEEEEEeCChhhHHHHHHhHHHHHHhcCCCceeEEEEEeeeceecCCCceeeeCCchhhccchhhhhhhhhcCC
Q 042427           25 SSENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGNSMMQPDGTFVCQHGPGECLLNTIEACTISIYPD  104 (229)
Q Consensus        25 ~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a~~~~~~~f~CQHG~~EC~gN~~~aCai~~~~~  104 (229)
                      .+.++.|..|.--.||.|++| ...+.++..+ +.+.+.+.++|+--.... .          .=...+..+++... ..
T Consensus        16 ~~~~~~Ivef~d~~Cp~C~~~-~~~~~~l~~~-~~~~~~~~~~~~~~~~~~-~----------~~~~~~~~~~~~~~-~~   81 (181)
T d1beda_          16 ASSSPVVSEFFSFYCPHCNTF-EPIIAQLKQQ-LPEGAKFQKNHVSFMGGN-M----------GQAMSKAYATMIAL-EV   81 (181)
T ss_dssp             CCSSCEEEEEECTTCHHHHHH-HHHHHHHHHT-SCTTCEEEEEECSSSSGG-G----------HHHHHHHHHHHHHT-TC
T ss_pred             CCCCCEEEEEECCCCccchhh-hhhhhhHhhh-cccccceeEEeccccccc-c----------HHHHHHHHHHHHHh-cc
Confidence            456778888999999999999 4567777775 666666666554222110 0          00111222222211 11


Q ss_pred             ccch-hhhhhhhhcc-hhhhhhHHHHHHHhhcCCCCCcc-ccccCcchhHHHHHHHHHhhhcCCCCeeeeEEEECCeech
Q 042427          105 VVQH-FSFIHCVERL-ALEKRQAEWINCFELTKLGRVPI-DCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQPLQ  181 (229)
Q Consensus       105 ~~~~-~~fi~C~~~~-~~~~~~~~~~~Ca~~~gl~~~~I-~C~~~~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~~  181 (229)
                      .... ..+..=+... ......+....-+...|+|.+.+ +|.++++-++.+.+..+....+  .++.+|+++|||+++.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gvd~~~~~~~~~~~~~~~~v~~~~~~~~~~--gi~gTPt~~InGk~~v  159 (181)
T d1beda_          82 EDKMVPVMFNRIHTLRKPPKDEQELRQIFLDEGIDAAKFDAAYNGFAVDSMVRRFDKQFQDS--GLTGVPAVVVNNRYLV  159 (181)
T ss_dssp             HHHHHHHHHHHHTTSCCCCCSHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHH--TCCSSSEEEETTTEEE
T ss_pred             hhhHHHHHHHHHHHhccccchHHHHHHHHHHhcCCHHHHHHHHhChHHHHHHHHHHHHHHHh--CCccccEEEECCEEee
Confidence            1111 1111111111 01112344567788899999999 9999998888888888777765  4799999999998642


Q ss_pred             -----hhhhhHHHHHH
Q 042427          182 -----EDFMNFANHVC  192 (229)
Q Consensus       182 -----~~~~nl~~~VC  192 (229)
                           ...+.|...|=
T Consensus       160 ~~~~~~~~~~l~~~i~  175 (181)
T d1beda_         160 QGQSVKSLDEYFDLVN  175 (181)
T ss_dssp             CGGGCCSHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHH
Confidence                 12455555543

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.66  E-value=8.9e-05  Score=56.73  Aligned_cols=145  Identities=13%  Similarity=0.134  Sum_probs=72.2

Q ss_pred             CCCceEEEEEEEeCChhhHHHHHHhHHHHHHhcCCC--ceeEEEEEeeeceecCCCceeeeCCchhhccchhhhhhhhhc
Q 042427           25 SSENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNS--IVNLRMIPWGNSMMQPDGTFVCQHGPGECLLNTIEACTISIY  102 (229)
Q Consensus        25 ~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~--~vdl~lvP~G~a~~~~~~~f~CQHG~~EC~gN~~~aCai~~~  102 (229)
                      .+.+|.|..|..-.||.|++|- ..+.++..+ ..+  .+.+.++|+..-.  ..           -..-..-+|+... 
T Consensus        22 ~~a~v~I~ef~d~~Cp~C~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~-----------~~~a~~~~~~~~~-   85 (172)
T d1z6ma1          22 SNAPVKMIEFINVRCPYCRKWF-EESEELLAQ-SVKSGKVERIIKLFDKEK--ES-----------LQRGNVMHHYIDY-   85 (172)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHH-HHHHHHHHH-HHHTTSEEEEEEECCCCS--TT-----------THHHHHHHTTCCT-
T ss_pred             CCCCEEEEEEECCCCHhHHHHH-HHHhhhhhh-hccccceeeeeccccccc--hh-----------hHHHHHHHHHHHH-
Confidence            4669999999999999999995 456666553 333  3444555543321  11           1111222232222 


Q ss_pred             CCccchhhhhhhhhcchhhhhhHHHHHHHhhcCCCCCccccccCcchhHHHHHHHHHhhhcCCCCeeeeEEEECCeechh
Q 042427          103 PDVVQHFSFIHCVERLALEKRQAEWINCFELTKLGRVPIDCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQPLQE  182 (229)
Q Consensus       103 ~~~~~~~~fi~C~~~~~~~~~~~~~~~Ca~~~gl~~~~I~C~~~~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~~~  182 (229)
                      .....++.|+.=...............=++..+.+    .|.++..-..++.+..+....+  .++.+|+++|||+.+..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~~~~a~~~--gI~gTPt~~Ing~~~~g  159 (172)
T d1z6ma1          86 SAPEQALSALHKMFATQDEWGNLTLEEVATYAEKN----LGLKEQKDATLVSAVIAEANAA--HIQFVPTIIIGEYIFDE  159 (172)
T ss_dssp             TCHHHHHHHHHHHHHTHHHHTTSCHHHHHHHHHHT----SCCCCCCCHHHHHHHHHHHHHH--TCCSSCEEEETTEEECT
T ss_pred             ccchhHHHHHHHHHHhccccchHHHHHHHHHHHhh----hhhhhHHHHHHHHHHHHHHHHc--CCCcCCEEEECCEEecC
Confidence            12233444432222111000000000111111111    3555555555665555555554  58999999999987632


Q ss_pred             --hhhhHHHHH
Q 042427          183 --DFMNFANHV  191 (229)
Q Consensus       183 --~~~nl~~~V  191 (229)
                        ..+.|...|
T Consensus       160 ~~~~~~~~~~i  170 (172)
T d1z6ma1         160 SVTEEELRGYI  170 (172)
T ss_dssp             TCCHHHHHHHH
T ss_pred             CCCHHHHHHHH
Confidence              344555543

>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=97.35  E-value=0.00013  Score=56.62  Aligned_cols=140  Identities=15%  Similarity=0.095  Sum_probs=78.3

Q ss_pred             CCceEEEEEEEeCChhhHHHHHHhHHHHH--HhcCCCceeEEEEEeeeceecCCCceeeeCCchhhccchhhhhhhhhcC
Q 042427           26 SENVTVSVYYETLCPYCADFIVNHLVKLF--QKGLNSIVNLRMIPWGNSMMQPDGTFVCQHGPGECLLNTIEACTISIYP  103 (229)
Q Consensus        26 ~~kV~V~vyyESlCPds~~Fi~~qL~p~~--~~~l~~~vdl~lvP~G~a~~~~~~~f~CQHG~~EC~gN~~~aCai~~~~  103 (229)
                      ..++.|.-|+.--||.|++|- ..|.+..  .+...+.+.+..+|+......  ....         .-..-+|+...-.
T Consensus        17 ~~~~~VvEffdy~Cp~C~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---------~a~~~~~~~~~~~   84 (188)
T d1fvka_          17 AGAPQVLEFFSFFCPHCYQFE-EVLHISDNVKKKLPEGVKMTKYHVNFMGGD--LGKD---------LTQAWAVAMALGV   84 (188)
T ss_dssp             TTCCSEEEEECTTCHHHHHHH-HTTCHHHHHHTTSCTTCCEEEEECSSSSHH--HHHH---------HHHHHHHHHHHTC
T ss_pred             CCCCEEEEEECCCChhhHHHH-HHHHHHHHHhhccCCceEEEEEecCcCCCh--hHHH---------HHHHHHHHHHHhh
Confidence            345566678889999999995 4554443  333556778887776532211  0000         0001111111111


Q ss_pred             CccchhhhhhhhhcchhhhhhHHHHHHHhhcCCCCCcc-ccccCcchhHHHHHHHHHhhhcCCCCeeeeEEEECCee
Q 042427          104 DVVQHFSFIHCVERLALEKRQAEWINCFELTKLGRVPI-DCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQP  179 (229)
Q Consensus       104 ~~~~~~~fi~C~~~~~~~~~~~~~~~Ca~~~gl~~~~I-~C~~~~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~  179 (229)
                      .......+..=+..............=+...|+|.+.+ +|.++++=.+++.++.+....+  .++.+||++|||++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~v~~~~~~a~~~--gI~gTPt~vInGky  159 (188)
T d1fvka_          85 EDKVTVPLFEGVQKTQTIRSASDIRDVFINAGIKGEEYDAAWNSFVVKSLVAQQEKAAADV--QLRGVPAMFVNGKY  159 (188)
T ss_dssp             HHHHHHHHHHHHHTSCCCCSHHHHHHHHHHTTCCHHHHHHHHHCHHHHHHHHHHHHHHHHT--TCCSSSEEEETTTE
T ss_pred             hhhHHHHHHHHhhhhcccchHHHHHHHHHHccCCHHHHHhhhccHHHHHHHHHHHHHHHHc--CCccccEEEECCEE
Confidence            11111111111111111112233445567789999889 9999887788888887777765  58999999999975

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.79  E-value=0.03  Score=42.86  Aligned_cols=43  Identities=28%  Similarity=0.530  Sum_probs=35.5

Q ss_pred             CCCceEEEEEEEeCChhhHHHHHHhHHHHHHhcCCCceeEEEEEeee
Q 042427           25 SSENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGN   71 (229)
Q Consensus        25 ~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~   71 (229)
                      .+.++.|.+|..-.||+|++|.. +|.+..++   ..+.+.++||+-
T Consensus        34 ~~a~~tv~vF~D~~CP~C~~~~~-~l~~l~~~---~~v~v~~~~~~~   76 (169)
T d1v58a1          34 KDAPVIVYVFADPFCPYCKQFWQ-QARPWVDS---GKVQLRTLLVGV   76 (169)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHHH-HHHHHHHT---TSEEEEEEECCC
T ss_pred             CCCCEEEEEEECCCCcchHHHHH-HHHHHHhc---cceeEEEEeccc
Confidence            57789999999999999999974 68887764   248889999875

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=93.45  E-value=0.022  Score=45.05  Aligned_cols=53  Identities=17%  Similarity=0.112  Sum_probs=45.1

Q ss_pred             HHHHHHhhcCCCCCcc-ccccCcchhHHHHHHHHHhhhcCCCCeeeeEEEECCeec
Q 042427          126 EWINCFELTKLGRVPI-DCYRNGLGKLLEQKYATETAQLKPPHRFVPWVVVNNQPL  180 (229)
Q Consensus       126 ~~~~Ca~~~gl~~~~I-~C~~~~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~  180 (229)
                      ...+=+.+.|+|.+.. +|.+|..-+..+.+..+.+.++  .++.||+++|||++.
T Consensus         8 ~i~~~~~~~Gld~~~f~~~~~s~~~~~~v~~~~~~a~~~--gi~GtPtfiVnGky~   61 (195)
T d1un2a_           8 DIRDVFINAGIKGEEYDAAWNSFVVKSLVAQQEKAAADV--QLRGVPAMFVNGKYQ   61 (195)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHTSHHHHHHHHHHHHHHHHT--TCCSSSEEEETTTEE
T ss_pred             HHHHHHHHcCCCHHHHHHHHcCHHHHHHHHHHHHHHHHh--CCCcCCEEEECCeee
Confidence            3455678899999999 9999998888888888888876  489999999999864

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=86.33  E-value=0.44  Score=35.21  Aligned_cols=43  Identities=19%  Similarity=0.428  Sum_probs=33.1

Q ss_pred             CCCceEEEEEEEeCChhhHHHHHHhHHHHHHhcCCCceeEEEEEeeec
Q 042427           25 SSENVTVSVYYETLCPYCADFIVNHLVKLFQKGLNSIVNLRMIPWGNS   72 (229)
Q Consensus        25 ~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a   72 (229)
                      .+.|+.|.+|..=.||+|++|- .++.++.+.    .+++.+++|...
T Consensus        24 ~~ak~~I~~FsD~~CPyC~~~~-~~l~~l~~~----~~~v~~~~~~~~   66 (150)
T d1t3ba1          24 KNEKHVVTVFMDITCHYCHLLH-QQLKEYNDL----GITVRYLAFPRA   66 (150)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHH-TTHHHHHHT----TEEEEEEECCSS
T ss_pred             CCCCEEEEEEECCCCHHHHHHh-HHHHHHhcc----CceEEEEEeccc
Confidence            6778999999999999999984 467666653    467788776543