Citrus Sinensis ID: 042434

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------
Protein Sequence
MENSSTMIGPRGLIKKYEFVRVVVQCLYSLGYQKSASCLESESGVSYKSKGFERLEVQILNGDWDGCIDTLIAITDLNDERRASVLFPVFKQCFLEYLNRGDDSLALNVLRKRVSSLQMSKDTIHNLASSMLCLEGMNLGKIDEGVVLELRKRLLVELERLLPPPEVVPERRLEHLVETAVTSQIDSCQYHNSSVAISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSEV
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHcccccHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHcccEEEEEEEEEccccEEEEccccEEEEcccccccEEEccccccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEEcccccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEEEccccEEEEccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccEEEEEEcccccEEEEEEEcccccEEEEEEEEEcccccEEEEEEccccEEEEEcccccEEEEcccccccEEEEEEccccccEEEEEEccccEEEEcccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEcccccccHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccHHHHHHHHHHHcccccccccEEEEEEccccccEEccccccEEEEEccccccEEEEEEEccccccEEEEEEccccEEEccccccEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEEccccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEccccEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEEccccccEEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEEccccccc
Coil and Loop (DISEMBL)
mensstmigprglikkYEFVRVVVQCLYSlgyqksasclesesgvsykskgfERLEVQILNGDWDGCIDTLIAITdlnderrasvlFPVFKQCFLEYLNRGDDSLALNVLRKRVSSLQMSKDTIHNLASSMLClegmnlgkidEGVVLELRKRLLVELErllpppevvperRLEHLVETAVTSQIDSCQYHNSSVAISLyedhccgrdqipTETVQILTEHKNEVWFVQFSnngeylassssdCSAIIWKVLEDSKLTLKHTLRshqnpvsfvawspddtklltcgnaevlkLWDVETGickhtfgdhgfivsscawfpdskrlvcgssdtekgifmcdcdgneikawrgtripkvldlavtpdgenlisvlsdkdiriLNLGTYAERviseehpitslsvsVDCKNFIVNLNSQEIHMWDvagkwekpfkytghsqnkYVIRScfggldgtfiasgsensQIYIWNrrnskpieilsghsmtvncvswnpkrpkmlasasddhtiriwgpcqssev
Flexible Loop (DISEMBL)
mensstmigprglikkyEFVRVVVQCLYSLGYQKSASCLESESGVSYKSKGFERLEVQILNGDWDGCIDTLIAITDLNDERRASVLFPVFKQCFLEYLNRGDDSLALNVLRKRVSSLQMSKDTIHNLASSMLCLEGMNLGKIDEGVVLELRKRLLVElerllpppevvperrLEHLVETAVTSQIDSCQYHNSSVAISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLrshqnpvsfvawspDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLisvlsdkdiriLNLGTYAERVISeehpitslsvsVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLasasddhtiriwgpcqssev
Low Complexity Region (SEG)
MENSSTMIGPRGLIKKYEFVRVVVQCLYSLGYQKSASCLESESGVSYKSKGFERLEVQILNGDWDGCIDTLIAITDLNDERRASVLFPVFKQCFLEYLNRGDDSLALNVLRKRVSSLQMSKDTIHNLASSMLCLEGMNLGKIDEGvvlelrkrllvelerllpppevvperrleHLVETAVTSQIDSCQYHNSSVAISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSEV
Disordered region (IsUnstruct)
*********PRGLIKKYEFVRVVVQCLYSLGYQKSASCLESESGVSYKSKGFERLEVQILNGDWDGCIDTLIAITDLNDERRASVLFPVFKQCFLEYLNRGDDSLALNVLRKRVSSLQMSKDTIHNLASSMLCLEGMNLGKIDEGVVLELRKRLLVELERLLPPPEVVPERRLEHLVETAVTSQIDSCQYHNSSVAISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNP*************TIRIWG*******
Disordered Region (DISOPRED)
*************IKKYEFVRVVVQCLYSLGYQKSASCLESESGVSYKSKGFERLEVQILNGDWDGCIDTLIAITDLNDERRASVLFPVFKQCFLEYLNRGDDSLALNVLRKRVSSLQMSKDTIHNLASSMLCLEGMNLGKIDEGVVLELRKRLLVE*ERL*****VVPERRLEHLVETAVTSQIDSCQYHNSSVAISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQS***
Disordered Region (DISEMBL)
********GPRGLIKKYEFVRVVVQCLYSLGYQKSASCLESESGVSYKSKGFERLEVQILNGDWDGCIDTLIAITDLNDERRASVLFPVFKQCFLEYLNRGDDSLALNVLRKRVSSLQMSKDTIHNLASSMLCLEGMNLGKIDEGVVLELRKRLLVELERLLPPPEVVPERRLEHLVETAVTSQIDSCQYHNSSVAISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSEV
Disordered Region (DISPRO)
*****TMIGPRGLIKKYEFVRVVVQCLYSLGYQKSASCLESESGVSYKSKGFERLEVQILNGDWDGCIDTLIAITDLNDERRASVLFPVFKQCFLEYLNRGDDSLALNVLRKRVSSLQMSKDTIHNLASSMLCLEGMNLGKIDEGVVLELRKRLLVELERLLPPPEVVPERRLEHLVETAVTSQIDSCQYHNSSVAISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MENSSTMIGPRGLIKKYEFVRVVVQCLYSLGYQKSASCLESESGVSYKSKGFERLEVQILNGDWDGCIDTLIAITDLNDERRASVLFPVFKQCFLEYLNRGDDSLALNVLRKRVSSLQMSKDTIHNLASSMLCLEGMNLGKIDEGVVLELRKRLLVELERLLPPPEVVPERRLEHLVETAVTSQIDSCQYHNSSVAISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSEV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	517	2.2.26 [Sep-21-2011]
Q5SP67	576	WD repeat-containing prot	yes	no	0.943	0.847	0.389	8e-91
Q28D01	614	WD repeat-containing prot	yes	no	0.943	0.794	0.363	5e-90
Q9H7D7	661	WD repeat-containing prot	yes	no	0.943	0.738	0.374	7e-90
Q8C6G8	641	WD repeat-containing prot	yes	no	0.945	0.762	0.371	8e-90
Q7K0L4	630	WD repeat-containing prot	yes	no	0.940	0.771	0.346	1e-78
Q9UT85	507	Uncharacterized WD repeat	yes	no	0.924	0.942	0.337	1e-65
Q93847	395	Uncharacterized WD repeat	yes	no	0.555	0.726	0.31	2e-30
Q4V8C4	328	WD repeat-containing prot	no	no	0.566	0.893	0.305	7e-26
Q86VZ2	330	WD repeat-containing prot	no	no	0.549	0.860	0.312	2e-25
Q9D7H2	328	WD repeat-containing prot	no	no	0.566	0.893	0.292	2e-25

>sp|Q5SP67|WDR26_DANRE WD repeat-containing protein 26 OS=Danio rerio GN=wdr26 PE=1 SV=1

 Score =  334 bits (857), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 198/508 (38%), Positives = 288/508 (56%), Gaps = 20/508 (3%)

Query: 18  EFVRVVVQCLYSLGYQKSASCLESESGVSYKSKGFERLEVQILNGDWDGCIDTLIAITDL 77
           + +R++ Q L+ LG  ++   L  ESG   +     +    ++ G+WD   + L  +  L
Sbjct: 54  DVIRLIGQHLHGLGLNQTVDLLMQESGCRLEHSSATKFRNHVMEGEWDKAENDLNELKAL 113

Query: 78  NDERRASVL--FPVFKQCFLEYLNRGDDSLALNVLRKRVSSLQMSKDTIHNLASSMLCLE 135
                A V   F + +Q +LEYL  G    AL VLR  ++ L+ + D IH L+  ++C  
Sbjct: 114 MHSPNAIVRMKFLLLQQKYLEYLEDGKVLEALQVLRGELTPLKYNTDRIHVLSGYLMCSH 173

Query: 136 GMNL-GKID-EGVVLELRKRLLVELERLLPPPEVVPERRLEHLVETAVTSQIDSCQYHNS 193
             +L  K + EG     R RLL +L+  LPP  ++P RRL+ L+  AV  Q D C YHN+
Sbjct: 174 AEDLKAKAEWEGKGAGSRCRLLDKLQTYLPPSVMLPPRRLQTLLRQAVELQRDRCLYHNT 233

Query: 194 SVAISLYED-----HCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAII 248
            +  SL        H C R Q P  T QILTEH NEVWF +FSN+G  LA+ S D + II
Sbjct: 234 KLDSSLDSVSLLLDHVCSRKQFPCYTQQILTEHCNEVWFCKFSNDGTKLATGSKDTTVII 293

Query: 249 WKVLEDS-KLTLKHTLRSHQNPVSFVAWSPDDTKLLTCG--NAEVLKLWDVETGICKHTF 305
           W+V  D+ +L L  TL  H   VS++AWSPDD  L+ CG  +   L LW+V+TG  +   
Sbjct: 294 WQVEPDTHQLKLLRTLEGHAYGVSYLAWSPDDVYLIACGPDDCSELWLWNVQTGELRTKM 353

Query: 306 GD-HGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPD 364
              H   ++S AW PD KR V G    +   + CD DGN +++W G R+     L    D
Sbjct: 354 SQSHEDSLTSVAWNPDGKRFVTGGQRGQ--FYQCDLDGNLLESWEGVRVQC---LWCMGD 408

Query: 365 GENLISVLSDKDIRILNLGTYAER-VISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVA 423
           G  +++  + + IR  +     +R ++ E+HPI S +VS + +  ++N+ +Q +H+WD+ 
Sbjct: 409 GRTVLASDTHQRIRGYSFEDLTDRNIVQEDHPIMSFTVSKNGRLALLNVATQGVHLWDLQ 468

Query: 424 GKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMT 483
            +     KY G +Q  Y I SCFGG +  FIASGSE+ ++YIW++R+  PI  L+GH+ T
Sbjct: 469 DR-VLVRKYQGVTQGFYTIHSCFGGHNEDFIASGSEDHKVYIWHKRSELPIVELTGHTRT 527

Query: 484 VNCVSWNPKRPKMLASASDDHTIRIWGP 511
           VNCVSWNP  P ++ASASDD T+RIWGP
Sbjct: 528 VNCVSWNPCIPSLMASASDDGTVRIWGP 555

May be involved in MAPK pathways.
Danio rerio (taxid: 7955)

>sp|Q28D01|WDR26_XENTR WD repeat-containing protein 26 OS=Xenopus tropicalis GN=wdr26 PE=2 SV=2

 Score =  332 bits (850), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 194/533 (36%), Positives = 294/533 (55%), Gaps = 45/533 (8%)

Query: 18  EFVRVVVQCLYSLGYQKSASCLESESGVSYKSKGFERLEVQILNGDWDGCIDTLIAITDL 77
           + +R++ Q L+ LG  ++   L  ESG   +     +    ++ G+WD   + L  +  L
Sbjct: 70  DVIRLIGQHLHGLGLNQTVDLLMQESGCRLEHPSATKFRNHVMEGEWDKAENDLNELKSL 129

Query: 78  NDERRA---------------------------SVLFPVFKQCFLEYLNRGDDSLALNVL 110
                A                            + F + +Q +LEYL  G    AL VL
Sbjct: 130 VHSPHAVAACRPSSGGSGSEHSPTSCPTADVIRRMKFLLLQQKYLEYLEDGKVLEALQVL 189

Query: 111 RKRVSSLQMSKDTIHNLASSMLCLEGMNL-GKID-EGVVLELRKRLLVELERLLPPPEVV 168
           R  ++ L+ + + IH L+  ++C    +L  K + EG     R +LL +L+  LPP  ++
Sbjct: 190 RCELTPLKYNTERIHVLSGYLMCSHADDLRAKAEWEGKGTASRSKLLDKLQTYLPPSVML 249

Query: 169 PERRLEHLVETAVTSQIDSCQYHNSSV-----AISLYEDHCCGRDQIPTETVQILTEHKN 223
           P RRL+ L+  AV  Q D C YHN+ +     ++SL  DH C R Q P  T Q+LTEH N
Sbjct: 250 PPRRLQTLLRQAVELQRDRCLYHNTKLDNNLDSVSLLIDHVCSRKQFPCFTQQVLTEHCN 309

Query: 224 EVWFVQFSNNGEYLASSSSDCSAIIWKVLEDS-KLTLKHTLRSHQNPVSFVAWSPDDTKL 282
           EVWF +FSN+G  LA+ S D + IIW+V  D+ +L L  TL  H   VS++AWSPDD  L
Sbjct: 310 EVWFCKFSNDGTKLATGSKDTTVIIWQVDPDTHQLKLLKTLEGHAYGVSYLAWSPDDNYL 369

Query: 283 LTCG--NAEVLKLWDVETGICKHTFGD-HGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCD 339
           + CG  +   L LW+V+TG  +      H   ++S AW PD KR V G    +   + CD
Sbjct: 370 IACGPDDCSELWLWNVQTGELRTKMSQSHEDSLTSVAWNPDGKRFVTGGQRGQ--FYQCD 427

Query: 340 CDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAER-VISEEHPITS 398
            DGN + +W G R+  +  L+   DG+ +++  + + IR  N     +R ++ E+HPI S
Sbjct: 428 LDGNLLDSWEGVRVQCLWCLS---DGKTVLASDTHQRIRGYNFEDLTDRNIVQEDHPIMS 484

Query: 399 LSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGS 458
            ++S + +  ++N+ +Q +H+WD+  +     KY G +Q  Y I SCFGG +  FIASGS
Sbjct: 485 FTISRNGRLALLNVATQGVHLWDLQDR-VLVRKYQGVTQGFYTIHSCFGGHNEDFIASGS 543

Query: 459 ENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGP 511
           E+ ++Y+W++R+  PI  L+GH+ TVNCVSWNP+ P ++ASASDD T+RIWGP
Sbjct: 544 EDHKVYVWHKRSELPIAELTGHTRTVNCVSWNPQIPSLMASASDDGTVRIWGP 596

May be involved in MAPK pathways.

Xenopus tropicalis (taxid: 8364)

>sp|Q9H7D7|WDR26_HUMAN WD repeat-containing protein 26 OS=Homo sapiens GN=WDR26 PE=1 SV=3

 Score =  331 bits (849), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 196/524 (37%), Positives = 290/524 (55%), Gaps = 36/524 (6%)

Query: 18  EFVRVVVQCLYSLGYQKSASCLESESGVSYKSKGFERLEVQILNGDWDGCIDTLIAITDL 77
           + +R++ Q L  LG  ++   L  ESG   +     +    ++ GDWD   + L  +  L
Sbjct: 126 DVIRLIGQHLNGLGLNQTVDLLMQESGCRLEHPSATKFRNHVMEGDWDKAENDLNELKPL 185

Query: 78  NDERRASVL------------------FPVFKQCFLEYLNRGDDSLALNVLRKRVSSLQM 119
                A V+                  F + +Q +LEYL  G    AL VLR  ++ L+ 
Sbjct: 186 VHSPHAIVVRGALEISQTLLGIIVRMKFLLLQQKYLEYLEDGKVLEALQVLRCELTPLKY 245

Query: 120 SKDTIHNLASSMLCLEGMNL-GKID-EGVVLELRKRLLVELERLLPPPEVVPERRLEHLV 177
           + + IH L+  ++C    +L  K + EG     R +LL +L+  LPP  ++P RRL+ L+
Sbjct: 246 NTERIHVLSGYLMCSHAEDLRAKAEWEGKGTASRSKLLDKLQTYLPPSVMLPPRRLQTLL 305

Query: 178 ETAVTSQIDSCQYHNSSV-----AISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSN 232
             AV  Q D C YHN+ +     ++SL  DH C R Q P  T QILTEH NEVWF +FSN
Sbjct: 306 RQAVELQRDRCLYHNTKLDNNLDSVSLLIDHVCSRRQFPCYTQQILTEHCNEVWFCKFSN 365

Query: 233 NGEYLASSSSDCSAIIWKVLEDSKLTLKHTL-RSHQNPVSFVAWSPDDTKLLTCG--NAE 289
           +G  LA+ S D + IIW+V  D+ L         H   VS++AWSPDD  L+ CG  +  
Sbjct: 366 DGTKLATGSKDTTVIIWQVDPDTHLLKLLKTLEGHAYGVSYIAWSPDDNYLVACGPDDCS 425

Query: 290 VLKLWDVETGICKHTFGD-HGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAW 348
            L LW+V+TG  +      H   ++S AW PD KR V G    +   + CD DGN + +W
Sbjct: 426 ELWLWNVQTGELRTKMSQSHEDSLTSVAWNPDGKRFVTGGQRGQ--FYQCDLDGNLLDSW 483

Query: 349 RGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAER-VISEEHPITSLSVSVDCKN 407
            G R+  +  L+   DG+ +++  + + IR  N     +R ++ E+HPI S ++S + + 
Sbjct: 484 EGVRVQCLWCLS---DGKTVLASDTHQRIRGYNFEDLTDRNIVQEDHPIMSFTISKNGRL 540

Query: 408 FIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWN 467
            ++N+ +Q +H+WD+  +     KY G +Q  Y I SCFGG +  FIASGSE+ ++YIW+
Sbjct: 541 ALLNVATQGVHLWDLQDR-VLVRKYQGVTQGFYTIHSCFGGHNEDFIASGSEDHKVYIWH 599

Query: 468 RRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGP 511
           +R+  PI  L+GH+ TVNCVSWNP+ P M+ASASDD T+RIWGP
Sbjct: 600 KRSELPIAELTGHTRTVNCVSWNPQIPSMMASASDDGTVRIWGP 643

May be involved in MAPK pathways.

Homo sapiens (taxid: 9606)

>sp|Q8C6G8|WDR26_MOUSE WD repeat-containing protein 26 OS=Mus musculus GN=Wdr26 PE=1 SV=3

 Score =  331 bits (848), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 195/525 (37%), Positives = 291/525 (55%), Gaps = 36/525 (6%)

Query: 18  EFVRVVVQCLYSLGYQKSASCLESESGVSYKSKGFERLEVQILNGDWDGCIDTLIAITDL 77
           + +R++ Q L  LG  ++   L  ESG   +     +    ++ GDWD   + L  +  L
Sbjct: 106 DVIRLIGQHLNGLGLNQTVDLLMQESGCRLEHPSATKFRNHVMEGDWDKAENDLNELKPL 165

Query: 78  NDERRASVL------------------FPVFKQCFLEYLNRGDDSLALNVLRKRVSSLQM 119
                A V+                  F + +Q +LEYL  G    AL VLR  ++ L+ 
Sbjct: 166 VHSPHAIVVRGALEISQTLLGIIVRMKFLLLQQKYLEYLEDGKVLEALQVLRCELTPLKY 225

Query: 120 SKDTIHNLASSMLCLEGMNL-GKID-EGVVLELRKRLLVELERLLPPPEVVPERRLEHLV 177
           + + IH L+  ++C    +L  K + EG     R +LL +L+  LPP  ++P RRL+ L+
Sbjct: 226 NTERIHVLSGYLMCSHAEDLRAKAEWEGKGTASRSKLLDKLQTYLPPSVMLPPRRLQTLL 285

Query: 178 ETAVTSQIDSCQYHNSSV-----AISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSN 232
             AV  Q D C YHN+ +     ++SL  DH C R Q P  T QILTEH NEVWF +FSN
Sbjct: 286 RQAVELQRDRCLYHNTKLDNNLDSVSLLIDHVCSRRQFPCYTQQILTEHCNEVWFCKFSN 345

Query: 233 NGEYLASSSSDCSAIIWKVLEDSKLTLKHTL-RSHQNPVSFVAWSPDDTKLLTCG--NAE 289
           +G  LA+ S D + IIW+V  D+ L         H   VS++AWSPDD+ L+ CG  +  
Sbjct: 346 DGTKLATGSKDTTVIIWQVDPDTHLLKLLKTLEGHAYGVSYIAWSPDDSYLVACGPDDCS 405

Query: 290 VLKLWDVETGICKHTFGD-HGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAW 348
            L LW+V+TG  +      H   ++S AW PD KR V G    +   + CD DGN + +W
Sbjct: 406 ELWLWNVQTGELRTKMSQSHEDSLTSVAWNPDGKRFVTGGQRGQ--FYQCDLDGNLLDSW 463

Query: 349 RGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAER-VISEEHPITSLSVSVDCKN 407
            G R+  +  L+   DG+ +++  + + +R  N     +R ++ E+HPI S ++S + + 
Sbjct: 464 EGVRVQCLWCLS---DGKTVLASDTHQRVRGYNFEDLTDRNIVQEDHPIMSFTISKNGRL 520

Query: 408 FIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWN 467
            ++N+ +Q +H+WD+  +     KY G +Q  Y I SCFGG +  FIASGSE+ ++YIW+
Sbjct: 521 ALLNVATQGVHLWDLQDR-VLVRKYQGVTQGFYTIHSCFGGHNEDFIASGSEDHKVYIWH 579

Query: 468 RRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPC 512
           +R+  PI  L+GH+ TVNCVSWNP+ P M+ASASDD T+RIWGP 
Sbjct: 580 KRSELPIAELTGHTRTVNCVSWNPQIPSMMASASDDGTVRIWGPA 624

May be involved in MAPK pathways.

Mus musculus (taxid: 10090)

>sp|Q7K0L4|WDR26_DROME WD repeat-containing protein 26 homolog OS=Drosophila melanogaster GN=CG7611 PE=1 SV=1

 Score =  294 bits (752), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 178/514 (34%), Positives = 281/514 (54%), Gaps = 28/514 (5%)

Query: 18  EFVRVVVQCLYSLGYQKSASCLESESGVSYKSKGFERLEVQILNGDWDGCIDTLIAITDL 77
           E +R++ Q L+ +G  KS   L  ESG   +     +    +L GDW      L  +  L
Sbjct: 99  EIIRLIGQYLHDVGLDKSVQTLMLESGCYLEHPSATKFREHVLMGDWSKADSDLKDLEPL 158

Query: 78  NDERRASVL----FPVFKQCFLEYLNRGDDSLALNVLRKRVSSLQMSKDTIHNLASSMLC 133
            D  + + +    F + +Q +LE+L+ G+   AL+VLR  ++ LQ +   +H L+S M+C
Sbjct: 159 IDNGKLATITEMKFILLEQKYLEHLDDGNPLDALHVLRSELTPLQHNITRVHQLSSYMMC 218

Query: 134 LEGMNLGKID--EGVVLELRKRLLVELERLLPPPEVVPERRLEHLVETAVTSQIDSCQYH 191
               +L +    EG  +  R  ++  L+  +PP  ++  RRL  L++ AV  Q   C  H
Sbjct: 219 STNQDLYQRAKWEGKGILSRALVMERLQTFMPPSVMMSPRRLRTLLQQAVELQSQHCPCH 278

Query: 192 NSS-----VAISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSA 246
           + +       +SL  DHCC  D  P +T+QILT+H +EVWF +FS +G  LA+ S D + 
Sbjct: 279 DMAWETNLETVSLLTDHCCTTDGFPMQTIQILTDHCDEVWFCKFSPDGLKLATGSKDSTV 338

Query: 247 IIWKVLEDSKLTLKHTL---RSHQNPVSFVAWSPDDTKLLTCG--NAEVLKLWDVETGIC 301
           IIW V +  KLTLKH        Q  VSFV+WSPD   +L  G  ++  L +W+V+ G  
Sbjct: 339 IIWDV-DPYKLTLKHRRVLDGQAQLSVSFVSWSPDSKLILVGGTEDSHELYIWNVDDGKL 397

Query: 302 KHTFGDHGFIVSSCAWFP-DSKRLVCGSSDTEKG-IFMCDCDGNEIKAWRGTRIPKVLDL 359
              F        +C  F  D  R VCG    +KG +++CD +G  + +W G R+  +   
Sbjct: 398 VVKFSQSLEDSLACGAFSRDGARFVCGG---QKGQLYLCDLNGTIVDSWEGVRVNSI--- 451

Query: 360 AVTPDGENLISVLSDKDIRILNLGTYAER--VISEEHPITSLSVSVDCKNFIVNLNSQEI 417
           A   D + +++  +   IR  N  +      ++ E HPI + S++   +  ++N+++Q +
Sbjct: 452 AFRADNKTILAADNHYRIRGYNFDSPRSDFDILREPHPIMTFSINSADRLALLNVSNQGL 511

Query: 418 HMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEIL 477
           H+WD+  K     ++ G  Q+ + I SCFGG++ +F+ASGSE+  +YIW+ +  +P+  L
Sbjct: 512 HLWDIEDKC-LVRRFQGIRQSNFAIHSCFGGVNESFVASGSEDKVVYIWHIKREEPLAKL 570

Query: 478 SGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGP 511
           +GH+ TVNCVSWNP  P +LASASDD T+RIWGP
Sbjct: 571 AGHTKTVNCVSWNPVYPSLLASASDDATVRIWGP 604

Drosophila melanogaster (taxid: 7227)

>sp|Q9UT85|YIPC_SCHPO Uncharacterized WD repeat-containing protein C343.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC343.04c PE=4 SV=1

 Score =  251 bits (641), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 170/503 (33%), Positives = 253/503 (50%), Gaps = 25/503 (4%)

Query: 18  EFVRVVVQCLYSLGYQKSASCLESESGVSYKSKGFERLEVQILNGDWDGCIDTLIAITDL 77
           E + +++Q L   GY +S   LE E+G+  +++  +RL+  +L GDW    +   +I  L
Sbjct: 10  EVIHLLLQFLNDYGYDESLKALEKETGLVSETEDVKRLKQAVLQGDWITA-EAAFSIMQL 68

Query: 78  NDE-RRASVLFPVFKQCFLEYLNRGDDSLALNVLRKRVSSLQMSKDTIHNLASSMLCLEG 136
            DE +R    F + KQ  LE    G    A+ VL +   S   +K+    ++  +     
Sbjct: 69  RDESKRKEAQFLLQKQRCLELARSGAICEAIYVL-QNFESTDFNKEKERLVSIILESNNK 127

Query: 137 MNLGKIDEGVVLELRKRLLVELERLLPPPEVVPERRLEHLVETAVTSQIDSCQYHNSSVA 196
            N   I +      R  LL +L   + P  ++P+RRLEHL++ A   Q+ S  YHN    
Sbjct: 128 SNNELITKNGYGNTRLDLLNQLSEYISPEILLPKRRLEHLLQQAKDYQVSSQVYHNVLKN 187

Query: 197 ISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSK 256
            S   D+     ++PT+   +  +H +EVW + +S+NG YLAS+S D +AII+ V+    
Sbjct: 188 FSFLSDYKADPSELPTKEYHVFHDHSDEVWQISYSHNGRYLASASKDKTAIIFDVV---- 243

Query: 257 LTLKHTLR--SHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSS 314
             LK   R   H + V+++ WSPDD  LL+C   + + LWD  TG     +  HGF VS 
Sbjct: 244 -NLKRVFRLIGHIDTVAYIRWSPDDRYLLSCSCDKSVILWDAFTGEKLRDYK-HGFSVSC 301

Query: 315 CAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISV--- 371
           C W PD    + GS D    I     +G  +  W    I    D+A+T DG  L  V   
Sbjct: 302 CCWLPDGLSFITGSPDCH--ITHWSLNGEILYKWEDVNI---YDMALTSDGTKLYIVGFE 356

Query: 372 ----LSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKW 426
                 DK I I ++ T    + IS +  +TS+ +S D K  + NL      +WD+    
Sbjct: 357 QLINAEDKHIAIYSVETRECIKKISLQSKVTSICLSKDSKYALTNLEPHTTFLWDLEEN- 415

Query: 427 EKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNC 486
               +Y GH    ++I SCFGG D TF+ SGSE+ +I IW+R + K +  LSGH   VN 
Sbjct: 416 RIVRQYMGHKLGNFLIGSCFGGKDDTFVLSGSEDDKIRIWHRESGKLLATLSGHVKCVNY 475

Query: 487 VSWNPKRPKMLASASDDHTIRIW 509
           V++NP  P   ASA DD+T+RIW
Sbjct: 476 VAYNPVDPYQFASAGDDNTVRIW 498

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q93847|YZLL_CAEEL Uncharacterized WD repeat-containing protein K04G11.4 OS=Caenorhabditis elegans GN=K04G11.4 PE=4 SV=1

 Score =  134 bits (337), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/300 (31%), Positives = 153/300 (51%), Gaps = 13/300 (4%)

Query: 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVA 274
            +I   HK  +  ++FS +G Y+ S S+DCS  IW++        + TL  H+  ++  +
Sbjct: 100 AEIPNAHKKSISGIKFSPDGRYMGSGSADCSIKIWRM----DFVYEKTLMGHRLGINEFS 155

Query: 275 WSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKG 334
           WS D   +++C + +++K++DV +G C  T   H   V  C + P    +  GS D    
Sbjct: 156 WSSDSKLIVSCSDDKLVKVFDVSSGRCVKTLKGHTNYVFCCCFNPSGTLIASGSFDETIR 215

Query: 335 IFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILN--LGTYAERVISE 392
           I+ C  +GN I +  G   P V  +    DG  L S   D  +RI +   GT  + +I E
Sbjct: 216 IW-CARNGNTIFSIPGHEDP-VSSVCFNRDGAYLASGSYDGIVRIWDSTTGTCVKTLIDE 273

Query: 393 EHP-ITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDG 451
           EHP IT +  S + K  + +  +  + +WD   K     +YTGH  +KY + + F    G
Sbjct: 274 EHPPITHVKFSPNGKYILASNLNNTLKLWDYQ-KLRVLKEYTGHENSKYCVAANFSVTGG 332

Query: 452 TFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS--DDHTIRIW 509
            +I SGSE+ ++YIWN +  + ++ L GH+  V C   +P +  ++ASA+   D  I+IW
Sbjct: 333 KWIVSGSEDHKVYIWNLQTREILQTLDGHNTAVMCTDCHPGQ-NIIASAALEPDMRIKIW 391

Caenorhabditis elegans (taxid: 6239)

>sp|Q4V8C4|WDR5B_RAT WD repeat-containing protein 5B OS=Rattus norvegicus GN=Wdr5b PE=2 SV=1

 Score =  119 bits (297), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 94/308 (30%), Positives = 152/308 (49%), Gaps = 15/308 (4%)

Query: 209 QIPTETVQI-LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQ 267
           Q P   +++ L  H   +  V+FS NGE+LASS++D   IIW   +      K TL  H 
Sbjct: 25  QKPNYALRLTLAGHSAAISSVKFSPNGEWLASSAADALIIIWGAYDGK---CKKTLYGHS 81

Query: 268 NPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCG 327
             +S VAWS D ++L++  + + LKLWDV +G C  T   H   V  C + P S  +V G
Sbjct: 82  LEISDVAWSSDSSRLVSASDDKTLKLWDVRSGKCLKTLKGHSDFVFCCDFNPPSNLIVSG 141

Query: 328 SSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGT-YA 386
           S D    I+     G  +K       P +  +    +G  ++S   D   RI +  +   
Sbjct: 142 SFDESVKIWEVKT-GKCLKTLSAHSDP-ISAVHFHCNGSLIVSGSYDGLCRIWDAASGQC 199

Query: 387 ERVISEEH--PITSLSVSVDCKNFIVNLNSQEIHMWDVA-GKWEKPFKYTGHSQNKYVIR 443
            R +++E   P++ +  S + K  +       + +WD + G+  K   YTGH   KY I 
Sbjct: 200 LRTLADEGNPPVSFVKFSPNGKYILTATLDSTLKLWDYSRGRCLK--TYTGHKNEKYCIF 257

Query: 444 SCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS-- 501
           + F      ++ SGSE++ +YIWN +  + ++ L GH+  V   + +P    ++ASA+  
Sbjct: 258 ASFSVTGRKWVVSGSEDNMVYIWNLQTKEIVQRLQGHTDVVISAACHPTE-NIIASAALE 316

Query: 502 DDHTIRIW 509
           +D TI+IW
Sbjct: 317 NDKTIKIW 324

May function as a substrate receptor for CUL4-DDB1 ubiquitin E3 ligase complex.

Rattus norvegicus (taxid: 10116)

>sp|Q86VZ2|WDR5B_HUMAN WD repeat-containing protein 5B OS=Homo sapiens GN=WDR5B PE=2 SV=1

 Score =  117 bits (294), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/298 (31%), Positives = 148/298 (49%), Gaps = 14/298 (4%)

Query: 218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP 277
           L  H   V  V+FS NGE+LASSS+D   IIW   +      + TL  H   +S VAWS 
Sbjct: 37  LVGHTEAVSSVKFSPNGEWLASSSADRLIIIWGAYDGK---YEKTLYGHNLEISDVAWSS 93

Query: 278 DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM 337
           D ++L++  + + LKLWDV +G C  T   H   V  C + P S  ++ GS D    I+ 
Sbjct: 94  DSSRLVSASDDKTLKLWDVRSGKCLKTLKGHSNYVFCCNFNPPSNLIISGSFDETVKIWE 153

Query: 338 CDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL--GTYAERVISEEH- 394
               G  +K       P V  +     G  ++S   D   RI +   G   + ++ +++ 
Sbjct: 154 VKT-GKCLKTLSAHSDP-VSAVHFNCSGSLIVSGSYDGLCRIWDAASGQCLKTLVDDDNP 211

Query: 395 PITSLSVSVDCKNFIVNLNSQEIHMWDVA-GKWEKPFKYTGHSQNKYVIRSCFGGLDGTF 453
           P++ +  S + K  +       + +WD + G+  K   YTGH   KY I + F    G +
Sbjct: 212 PVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKT--YTGHKNEKYCIFANFSVTGGKW 269

Query: 454 IASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS--DDHTIRIW 509
           I SGSE++ +YIWN +  + ++ L GH+  V   + +P    ++ASA+  +D TI++W
Sbjct: 270 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISAACHPTE-NLIASAALENDKTIKLW 326

May function as a substrate receptor for CUL4-DDB1 ubiquitin E3 ligase complex.

Homo sapiens (taxid: 9606)

>sp|Q9D7H2|WDR5B_MOUSE WD repeat-containing protein 5B OS=Mus musculus GN=Wdr5b PE=1 SV=1

 Score =  117 bits (293), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 154/308 (50%), Gaps = 15/308 (4%)

Query: 209 QIPTETVQI-LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQ 267
           Q P   +++ L  H   +  V+FS NGE+LASS++D   IIW   + +    K TL  H 
Sbjct: 25  QKPNYALRLTLAGHSAAISSVKFSPNGEWLASSAADALIIIWGAYDGN---CKKTLYGHS 81

Query: 268 NPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCG 327
             +S VAWS D ++L++  + + LK+WD+ +G C  T   H   V  C + P S  +V G
Sbjct: 82  LEISDVAWSSDSSRLVSASDDKTLKVWDMRSGKCLKTLKGHSDFVFCCDFNPPSNLIVSG 141

Query: 328 SSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGT-YA 386
           S D    I+     G  +K       P +  +    +G  ++S   D   RI +  +   
Sbjct: 142 SFDESVKIWEVK-TGKCLKTLSAHSDP-ISAVNFNCNGSLIVSGSYDGLCRIWDAASGQC 199

Query: 387 ERVISEEH--PITSLSVSVDCKNFIVNLNSQEIHMWDVA-GKWEKPFKYTGHSQNKYVIR 443
            R +++E   P++ +  S + K  +       + +WD + G+  K   YTGH   KY + 
Sbjct: 200 LRTLADEGNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLK--TYTGHKNEKYCLF 257

Query: 444 SCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS-- 501
           + F      ++ SGSE++ +YIWN +  + ++ L GH+  V   + +P +  ++ASA+  
Sbjct: 258 ASFSVTGRKWVVSGSEDNMVYIWNLQTKEIVQRLQGHTDVVISAACHPTK-NIIASAALE 316

Query: 502 DDHTIRIW 509
           +D TI++W
Sbjct: 317 NDKTIKVW 324

May function as a substrate receptor for CUL4-DDB1 ubiquitin E3 ligase complex.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	517
255585906	523	WD-repeat protein, putative [Ricinus com	1.0	0.988	0.746	0.0
225437937	520	PREDICTED: WD repeat-containing protein	1.0	0.994	0.735	0.0
356572311	523	PREDICTED: WD repeat-containing protein	0.988	0.977	0.719	0.0
15240036	523	transducin/WD40 domain-containing protei	0.988	0.977	0.697	0.0
297795023	523	transducin family protein [Arabidopsis l	0.988	0.977	0.697	0.0
297744245	460	unnamed protein product [Vitis vinifera]	0.883	0.993	0.671	0.0
356503648	527	PREDICTED: LOW QUALITY PROTEIN: WD repea	0.922	0.905	0.702	0.0
302818436	548	hypothetical protein SELMODRAFT_161256 [	0.965	0.910	0.523	1e-148
168035605	559	predicted protein [Physcomitrella patens	0.978	0.905	0.528	1e-146
357146516	533	PREDICTED: WD repeat-containing protein	0.972	0.943	0.523	1e-144

>gi|255585906|ref|XP_002533626.1| WD-repeat protein, putative [Ricinus communis] gi|223526484|gb|EEF28755.1| WD-repeat protein, putative [Ricinus communis]

 Score =  812 bits (2097), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/517 (74%), Positives = 446/517 (86%)

Query: 1   MENSSTMIGPRGLIKKYEFVRVVVQCLYSLGYQKSASCLESESGVSYKSKGFERLEVQIL 60
           MENS+ +IG +GLIK++EFVRV++Q L+SLGY+KSASCLE ESG+SYKS  FE LE QIL
Sbjct: 1   MENSTVVIGTKGLIKRHEFVRVIIQSLWSLGYKKSASCLEIESGISYKSVDFELLESQIL 60

Query: 61  NGDWDGCIDTLIAITDLNDERRASVLFPVFKQCFLEYLNRGDDSLALNVLRKRVSSLQMS 120
            G+W+GC++TL  + +L DE RAS LF V KQC LE L+ GDDS+AL VLRK+V +L++ 
Sbjct: 61  EGNWNGCVNTLNTVKELMDETRASALFLVIKQCLLECLSCGDDSMALAVLRKQVPALRLG 120

Query: 121 KDTIHNLASSMLCLEGMNLGKIDEGVVLELRKRLLVELERLLPPPEVVPERRLEHLVETA 180
           ++ + NLA ++LCL+ ++L K  +  +LELR  LL +LE+LLPPP V+PE RLEHLVETA
Sbjct: 121 REKVCNLAYNLLCLKEVDLSKTYDNAILELRNVLLKQLEKLLPPPIVLPEIRLEHLVETA 180

Query: 181 VTSQIDSCQYHNSSVAISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASS 240
           +T+QIDSC YHNS  A+SL+EDHCC RDQIPTETVQILTEH+NEVWFVQFSNNG YLASS
Sbjct: 181 ITAQIDSCMYHNSQEAVSLFEDHCCKRDQIPTETVQILTEHENEVWFVQFSNNGHYLASS 240

Query: 241 SSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI 300
           SSDC+AIIW+VLED +LT+K TLRSHQ PVSFVAWSPDDTKLLTCGN EVLKLWDVETG 
Sbjct: 241 SSDCTAIIWEVLEDDRLTIKRTLRSHQKPVSFVAWSPDDTKLLTCGNLEVLKLWDVETGT 300

Query: 301 CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLA 360
           CKHTFGDHGFIVSSCAWFPDSKR VCGSSD EKGI M DC GNEIKAWRGTR+PKVLDLA
Sbjct: 301 CKHTFGDHGFIVSSCAWFPDSKRFVCGSSDPEKGICMWDCHGNEIKAWRGTRMPKVLDLA 360

Query: 361 VTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMW 420
           VTPDG +LISV SDKDIRI NL T AE+VISEEHPITSLSVS+D K FIVNLNSQEIH+W
Sbjct: 361 VTPDGVHLISVFSDKDIRIFNLVTNAEQVISEEHPITSLSVSIDSKFFIVNLNSQEIHLW 420

Query: 421 DVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGH 480
           DVAG WEK  +Y GH Q+KYVIRSCFGGL+ +FIASGSENSQ+YIWNR+NS+PIE+LSGH
Sbjct: 421 DVAGNWEKALRYMGHKQHKYVIRSCFGGLNSSFIASGSENSQVYIWNRQNSRPIEVLSGH 480

Query: 481 SMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSEV 517
            MTVNCVSWNP+R +MLASASDD TIRIWGP QS  +
Sbjct: 481 LMTVNCVSWNPRRHQMLASASDDQTIRIWGPSQSKNI 517

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437937|ref|XP_002268789.1| PREDICTED: WD repeat-containing protein 26 [Vitis vinifera]

 Score =  803 bits (2075), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/517 (73%), Positives = 441/517 (85%)

Query: 1   MENSSTMIGPRGLIKKYEFVRVVVQCLYSLGYQKSASCLESESGVSYKSKGFERLEVQIL 60
           MEN++ M+GP+ LIKK+EFVR+++QCL+SLGY+ SASCLESESG+S+KS   + LE+Q+L
Sbjct: 1   MENATAMLGPKRLIKKHEFVRIIIQCLHSLGYKNSASCLESESGISHKSPESKLLEMQVL 60

Query: 61  NGDWDGCIDTLIAITDLNDERRASVLFPVFKQCFLEYLNRGDDSLALNVLRKRVSSLQMS 120
           N +W+  I  L  I DL DE RAS LF V +QC LE L+RGDDS AL +LRKRVS L++ 
Sbjct: 61  NANWEDSIGILNGIEDLTDETRASALFLVLQQCLLECLSRGDDSSALTILRKRVSPLKVG 120

Query: 121 KDTIHNLASSMLCLEGMNLGKIDEGVVLELRKRLLVELERLLPPPEVVPERRLEHLVETA 180
           ++ +HNLA+ ML L+ M +GKID+  + ELR++ LVELE+LLPPP  +PE RLEHLVETA
Sbjct: 121 REKVHNLAAGMLSLKEMGMGKIDDSSICELRRKSLVELEKLLPPPITLPEGRLEHLVETA 180

Query: 181 VTSQIDSCQYHNSSVAISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASS 240
           +T+Q+DSC YHNS   ISLYEDH CGRDQIPT+TVQILTEHK+EVWFVQFS+NGEYLASS
Sbjct: 181 ITAQMDSCIYHNSFREISLYEDHYCGRDQIPTQTVQILTEHKHEVWFVQFSHNGEYLASS 240

Query: 241 SSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI 300
           S DC+AIIWKVLE+  L L+H L+SHQNPVSFVAWSPDDT LLTCGN EVLKLWDVETG 
Sbjct: 241 SRDCAAIIWKVLENGVLILRHMLQSHQNPVSFVAWSPDDTMLLTCGNGEVLKLWDVETGT 300

Query: 301 CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLA 360
           CKHTFGDHGFIVSSCAWFPDSKR+VCGSSD EKGI+M DCDGNEIKAW+G R+PKVLDLA
Sbjct: 301 CKHTFGDHGFIVSSCAWFPDSKRIVCGSSDPEKGIYMWDCDGNEIKAWKGMRMPKVLDLA 360

Query: 361 VTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMW 420
           VTPDGENLIS+ S+K+IRILN+GT AE VISE++ ITSLSVS D K  IVNLNS+EIHMW
Sbjct: 361 VTPDGENLISIFSEKEIRILNVGTNAEHVISEDYSITSLSVSRDSKFLIVNLNSEEIHMW 420

Query: 421 DVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGH 480
           DVAGKWEKP KYTGH QNKYVIRSCFGG   TFIASGSENS +YIWNR NS P+E+LSGH
Sbjct: 421 DVAGKWEKPLKYTGHKQNKYVIRSCFGGFHCTFIASGSENSLVYIWNRGNSTPLEVLSGH 480

Query: 481 SMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSEV 517
            MTVNCVSWNP+R +MLASASDDHTIRIWGP Q   +
Sbjct: 481 LMTVNCVSWNPRRHQMLASASDDHTIRIWGPSQPRNI 517

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572311|ref|XP_003554312.1| PREDICTED: WD repeat-containing protein 26-like [Glycine max]

 Score =  766 bits (1977), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/513 (71%), Positives = 424/513 (82%), Gaps = 2/513 (0%)

Query: 1   MENSSTMIGPRGLIKKYEFVRVVVQCLYSLGYQKSASCLESESGVSYKSKGFERLEVQIL 60
           MEN   ++G +GLI+++EFVR+++QCLYSLGY  SASCLESESG+SYKS   + LE  IL
Sbjct: 1   MENPCEVLGSKGLIRRHEFVRIIIQCLYSLGYSSSASCLESESGISYKSNEVKLLESLIL 60

Query: 61  NGDWDGCIDTLIAITDLNDERRASVLFPVFKQCFLEYLNRGDDSLALNVLRKRVSSLQMS 120
           NG WD  ID L +I D   E R S LF VF+QC +EYLN G+ +LAL VLRK+VS+L   
Sbjct: 61  NGSWDESIDYLNSIKDELGETRESALFLVFRQCVMEYLNCGEYALALGVLRKQVSALDAG 120

Query: 121 KDTIHNLASSMLCLEGMNLGKIDEG--VVLELRKRLLVELERLLPPPEVVPERRLEHLVE 178
           K  +H+ A  +L  +   LG +D G  VV +LRK+LL +LE+L PPP  VPE RLEHLVE
Sbjct: 121 KCKVHSFAKCLLSFKDRELGAVDGGDVVVHDLRKKLLADLEKLFPPPISVPEGRLEHLVE 180

Query: 179 TAVTSQIDSCQYHNSSVAISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLA 238
             V S +DSC YH+SS  ISLYEDH C RDQIPT T QILT HKNEVWFVQFSNNGEYLA
Sbjct: 181 NTVMSWVDSCMYHSSSSPISLYEDHHCSRDQIPTTTTQILTGHKNEVWFVQFSNNGEYLA 240

Query: 239 SSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVET 298
           SSS+DC+AIIWKVLED KLTLKHTL  HQ+ VSFVAWSPDDTKLLTCGN EVLKLWDVET
Sbjct: 241 SSSNDCTAIIWKVLEDGKLTLKHTLYGHQHAVSFVAWSPDDTKLLTCGNTEVLKLWDVET 300

Query: 299 GICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLD 358
           G CKHTFG+ GF+VSSCAWFP+SK+ VCGSSD EKG+ M DCDGN IK+WRG R+PKV+D
Sbjct: 301 GTCKHTFGNQGFVVSSCAWFPNSKQFVCGSSDPEKGVCMWDCDGNVIKSWRGMRMPKVVD 360

Query: 359 LAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIH 418
           LAVTPDGE LIS+  DK+IRIL++GTYAERVISEEHPITSLSVS D K FIVNLNSQEIH
Sbjct: 361 LAVTPDGEYLISIFMDKEIRILHMGTYAERVISEEHPITSLSVSGDSKFFIVNLNSQEIH 420

Query: 419 MWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILS 478
           MWDVAGKW+KP ++ GH Q+KYVIRSCFGGL+ TFIASGSENSQ+YIWN RNS+P+E+LS
Sbjct: 421 MWDVAGKWDKPLRFMGHKQHKYVIRSCFGGLNNTFIASGSENSQVYIWNCRNSRPVEVLS 480

Query: 479 GHSMTVNCVSWNPKRPKMLASASDDHTIRIWGP 511
           GHSMTVNCVSWNPK P+MLASASDD+TIRIWGP
Sbjct: 481 GHSMTVNCVSWNPKIPQMLASASDDYTIRIWGP 513

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240036|ref|NP_199205.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|9758551|dbj|BAB09052.1| WD-repeat protein-like [Arabidopsis thaliana] gi|110742722|dbj|BAE99272.1| WD-repeat protein-like [Arabidopsis thaliana] gi|148535209|gb|ABQ85545.1| will die slowly [Arabidopsis thaliana] gi|332007645|gb|AED95028.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana]

 Score =  754 bits (1946), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/515 (69%), Positives = 436/515 (84%), Gaps = 4/515 (0%)

Query: 1   MENSS-TMIGPRGLIKKYEFVRVVVQCLYSLGYQKSASCLESESGVSYKSKGFERLEVQI 59
           MEN    ++G +GL+KK+EF+R++VQCLYSLG++ SASCLE ES + YK+   E LE Q+
Sbjct: 1   MENGLWEVLGSKGLLKKHEFIRILVQCLYSLGFKNSASCLEFESKILYKTADSEFLEKQV 60

Query: 60  LNGDWDGCIDTLIAITDLN-DERRASVLFPVFKQCFLEYLNRGDDSLALNVLRKRVSSLQ 118
           L+G+WD C+  L  I D + D+ R + L+ VFKQC LEYL RGD SLALNVLRK+   L+
Sbjct: 61  LSGNWDSCVQVLDRIFDNSMDDTRNTALYLVFKQCLLEYLKRGDVSLALNVLRKQAPLLR 120

Query: 119 MSKDTIHNLASSMLCLEGMNLGKIDEGVVLELRKRLLVELERLLPPPEVVPERRLEHLVE 178
           M K+ IH LA  ++  + M  G++D  +VL+LR++LLVELE+L+P P V+PERRLEHLVE
Sbjct: 121 MGKEKIHRLACDIVYSKEMESGEVDNCLVLDLRRKLLVELEKLIPLPIVIPERRLEHLVE 180

Query: 179 TAVTSQIDSCQYHNSSVAISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLA 238
           TAV  QID+C YHNS  A+SLY+DHCCGRDQIP+ETVQIL  HKNEVWFVQFSN+G+YLA
Sbjct: 181 TAVMDQIDTCMYHNSCDAVSLYKDHCCGRDQIPSETVQILVAHKNEVWFVQFSNSGKYLA 240

Query: 239 SSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVET 298
           ++SSDC+AIIWKVL+D+K+ LKHTL SHQNPVSFV+WSPDDTKLLTCGNAEVLKLWDV+T
Sbjct: 241 TASSDCTAIIWKVLDDNKVELKHTLESHQNPVSFVSWSPDDTKLLTCGNAEVLKLWDVDT 300

Query: 299 GICKHTFGDH--GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKV 356
           G+ +HTFG++  GF VSSCAWFPDS RLVCGSSD E+GI M D DGNEIKAWRGTRIPKV
Sbjct: 301 GVLRHTFGNNNTGFTVSSCAWFPDSTRLVCGSSDPERGIVMWDTDGNEIKAWRGTRIPKV 360

Query: 357 LDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQE 416
           +DLAVTPDGE++I+V SDK+IRILNL T  ERVISEE PITSLS+S D K FIVNL+ QE
Sbjct: 361 VDLAVTPDGESMITVFSDKEIRILNLETKVERVISEEQPITSLSISGDGKFFIVNLSCQE 420

Query: 417 IHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEI 476
           IH+WD+AG+W++P K++GH Q+KYVIRSCFGGLD +FIASGSE+SQ+YIWN +N+KP+E+
Sbjct: 421 IHLWDLAGEWKQPLKFSGHRQSKYVIRSCFGGLDSSFIASGSEDSQVYIWNLKNTKPLEV 480

Query: 477 LSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGP 511
           LSGHSMTVNCVSWNPK P+MLASASDD TIRIWGP
Sbjct: 481 LSGHSMTVNCVSWNPKNPRMLASASDDQTIRIWGP 515

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297795023|ref|XP_002865396.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297311231|gb|EFH41655.1| transducin family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  747 bits (1929), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/515 (69%), Positives = 433/515 (84%), Gaps = 4/515 (0%)

Query: 1   MENSS-TMIGPRGLIKKYEFVRVVVQCLYSLGYQKSASCLESESGVSYKSKGFERLEVQI 59
           MEN    ++G +GL+KK+EF+R++VQCLYSLG++ SASCLE ES +S KS  +E LE ++
Sbjct: 1   MENGLWEVLGSKGLLKKHEFIRILVQCLYSLGFKNSASCLEIESNISCKSADYESLEKRV 60

Query: 60  LNGDWDGCIDTLIAITDLN-DERRASVLFPVFKQCFLEYLNRGDDSLALNVLRKRVSSLQ 118
           L+GDWD C+  L  I D + D+ R + ++ VFKQC LEYL RGD SLALNVLRK+   L+
Sbjct: 61  LSGDWDSCVAVLDRIFDHSKDDTRNTAVYLVFKQCLLEYLKRGDVSLALNVLRKQAPMLR 120

Query: 119 MSKDTIHNLASSMLCLEGMNLGKIDEGVVLELRKRLLVELERLLPPPEVVPERRLEHLVE 178
           M K+ IH LA  ++  + M  G++D  +V  LRK+LLVELE+L+P P V+P+RRLEHLVE
Sbjct: 121 MGKEKIHRLACDIVYSKEMESGEVDSCLVQGLRKKLLVELEKLIPLPIVIPKRRLEHLVE 180

Query: 179 TAVTSQIDSCQYHNSSVAISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLA 238
           TAV  QIDSC YHNS  A+SLY+DHCCGRDQIP+ETVQIL  HKNEVWFVQFSN+G+YLA
Sbjct: 181 TAVMDQIDSCLYHNSWDAVSLYKDHCCGRDQIPSETVQILMAHKNEVWFVQFSNSGKYLA 240

Query: 239 SSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVET 298
           ++SSDC+AIIWKVL+DSK+ LKHTL SHQNPVSFV+WSPDDTKLLTCGNAEVLKLWDV+T
Sbjct: 241 TASSDCTAIIWKVLDDSKVELKHTLESHQNPVSFVSWSPDDTKLLTCGNAEVLKLWDVDT 300

Query: 299 GICKHTFGDH--GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKV 356
           G+ +HTFG++  GF VSSCAWFPDS RLVCGSSD E+GI M D DGNEIKAWRGTRIPKV
Sbjct: 301 GVLRHTFGNNNTGFTVSSCAWFPDSTRLVCGSSDPERGIVMWDTDGNEIKAWRGTRIPKV 360

Query: 357 LDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQE 416
           +DLAVTPDGE++I+V SDK+IRILNL T  ERVI EE PITSLS+S D K FIVNL+ QE
Sbjct: 361 VDLAVTPDGESMITVFSDKEIRILNLETKVERVIPEEQPITSLSISGDGKFFIVNLSCQE 420

Query: 417 IHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEI 476
           IH+WD+AG+W+ P K++GH Q+KYVIRSCFGGLD +FIASGSE+SQ+YIWN +N+KP+E+
Sbjct: 421 IHLWDLAGEWKLPLKFSGHRQSKYVIRSCFGGLDSSFIASGSEDSQVYIWNLKNAKPLEV 480

Query: 477 LSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGP 511
           LSGHSMTVNCVSWNPK P+MLASASDD TIRIWGP
Sbjct: 481 LSGHSMTVNCVSWNPKNPRMLASASDDQTIRIWGP 515

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744245|emb|CBI37215.3| unnamed protein product [Vitis vinifera]

 Score =  706 bits (1822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/517 (67%), Positives = 397/517 (76%), Gaps = 60/517 (11%)

Query: 1   MENSSTMIGPRGLIKKYEFVRVVVQCLYSLGYQKSASCLESESGVSYKSKGFERLEVQIL 60
           MEN++ M+GP+ LIKK+EFVR+++QCL+SLGY+ SASCLESESG+S+KS   + LE+Q+L
Sbjct: 1   MENATAMLGPKRLIKKHEFVRIIIQCLHSLGYKNSASCLESESGISHKSPESKLLEMQVL 60

Query: 61  NGDWDGCIDTLIAITDLNDERRASVLFPVFKQCFLEYLNRGDDSLALNVLRKRVSSLQMS 120
           N +W+  I  L  I DL DE R                                      
Sbjct: 61  NANWEDSIGILNGIEDLTDETR-------------------------------------- 82

Query: 121 KDTIHNLASSMLCLEGMNLGKIDEGVVLELRKRLLVELERLLPPPEVVPERRLEHLVETA 180
                  AS+ +C               ELR++ LVELE+LLPPP  +PE RLEHLVETA
Sbjct: 83  -------ASAFIC---------------ELRRKSLVELEKLLPPPITLPEGRLEHLVETA 120

Query: 181 VTSQIDSCQYHNSSVAISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASS 240
           +T+Q+DSC YHNS   ISLYEDH CGRDQIPT+TVQILTEHK+EVWFVQFS+NGEYLASS
Sbjct: 121 ITAQMDSCIYHNSFREISLYEDHYCGRDQIPTQTVQILTEHKHEVWFVQFSHNGEYLASS 180

Query: 241 SSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI 300
           S DC+AIIWKVLE+  L L+H L+SHQNPVSFVAWSPDDT LLTCGN EVLKLWDVETG 
Sbjct: 181 SRDCAAIIWKVLENGVLILRHMLQSHQNPVSFVAWSPDDTMLLTCGNGEVLKLWDVETGT 240

Query: 301 CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLA 360
           CKHTFGDHGFIVSSCAWFPDSKR+VCGSSD EKGI+M DCDGNEIKAW+G R+PKVLDLA
Sbjct: 241 CKHTFGDHGFIVSSCAWFPDSKRIVCGSSDPEKGIYMWDCDGNEIKAWKGMRMPKVLDLA 300

Query: 361 VTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMW 420
           VTPDGENLIS+ S+K+IRILN+GT AE VISE++ ITSLSVS D K  IVNLNS+EIHMW
Sbjct: 301 VTPDGENLISIFSEKEIRILNVGTNAEHVISEDYSITSLSVSRDSKFLIVNLNSEEIHMW 360

Query: 421 DVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGH 480
           DVAGKWEKP KYTGH QNKYVIRSCFGG   TFIASGSENS +YIWNR NS P+E+LSGH
Sbjct: 361 DVAGKWEKPLKYTGHKQNKYVIRSCFGGFHCTFIASGSENSLVYIWNRGNSTPLEVLSGH 420

Query: 481 SMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSEV 517
            MTVNCVSWNP+R +MLASASDDHTIRIWGP Q   +
Sbjct: 421 LMTVNCVSWNPRRHQMLASASDDHTIRIWGPSQPRNI 457

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503648|ref|XP_003520618.1| PREDICTED: LOW QUALITY PROTEIN: WD repeat-containing protein 26-like [Glycine max]

 Score =  661 bits (1705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/484 (70%), Positives = 389/484 (80%), Gaps = 7/484 (1%)

Query: 35  SASCLESESGVSYKSKGFERLEVQILNGDWDGCIDTLIAITDLNDERRASVLFPVFKQCF 94
           SASCLESESGVSYKS   + LE  I NG+WD  I  L +I ++  E R S LF VFKQC 
Sbjct: 37  SASCLESESGVSYKSNEVKLLESLISNGNWDESIGYLNSIKNVLGETRESTLFLVFKQCV 96

Query: 95  LEYLNRGDDSLALNVLRKRVSSLQMSKDTIHNLASSMLCLE-----GMNLGKIDEGVVLE 149
           +EYLN G+D+LAL VLRK+VS+L + K  +H+LA  +L        G   G     VV +
Sbjct: 97  MEYLNCGEDALALGVLRKQVSALDVDKCKVHSLAKCLLSFNKDRELGAVDGGDVVVVVHD 156

Query: 150 LRKRLLVELERLLPPPEVVPERRLEHLVETAVTSQIDSCQYHNSSVAISLYE--DHCCGR 207
           L K+LL +LE+L PPP  VPE RLEHLVE+ V S +DSC YH+SS  ISLYE  DH C R
Sbjct: 157 LLKKLLEDLEKLFPPPVSVPEGRLEHLVESTVMSWVDSCMYHSSSNTISLYEEEDHHCSR 216

Query: 208 DQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQ 267
           DQIPT T QILT HKNEVWFVQFSNNGEYL SSS+DC+AIIWKVLED KLTLKHTL  HQ
Sbjct: 217 DQIPTSTTQILTGHKNEVWFVQFSNNGEYLVSSSNDCTAIIWKVLEDGKLTLKHTLCGHQ 276

Query: 268 NPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCG 327
           + VSFVAWSPDDTKLLTCGN EVLK WDVETG CKHTFG+ GF+VSSCAWFP+SK+  CG
Sbjct: 277 HAVSFVAWSPDDTKLLTCGNTEVLKPWDVETGTCKHTFGNQGFVVSSCAWFPNSKQFGCG 336

Query: 328 SSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAE 387
           SSD EKG+ M DCDGN IK+W G R+PKV+DLAVTPDGE LIS+  DK+IRIL++GT AE
Sbjct: 337 SSDPEKGVCMWDCDGNVIKSWIGMRMPKVVDLAVTPDGEYLISIFMDKEIRILHMGTSAE 396

Query: 388 RVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFG 447
           +VISEEHPITSLSVS D K FIVNLNSQEIHMWDVAGKW+KP ++ GH Q+KYVIRSCFG
Sbjct: 397 QVISEEHPITSLSVSGDSKFFIVNLNSQEIHMWDVAGKWDKPLRFMGHKQHKYVIRSCFG 456

Query: 448 GLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIR 507
           GL+ TFIASG ENSQ+YIWN RNS+PIE+LSGHS+TVNCVSWNPK P+MLASASDD+TIR
Sbjct: 457 GLNNTFIASGCENSQVYIWNCRNSRPIEVLSGHSITVNCVSWNPKIPQMLASASDDYTIR 516

Query: 508 IWGP 511
           +WGP
Sbjct: 517 VWGP 520

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302818436|ref|XP_002990891.1| hypothetical protein SELMODRAFT_161256 [Selaginella moellendorffii] gi|300141222|gb|EFJ07935.1| hypothetical protein SELMODRAFT_161256 [Selaginella moellendorffii]

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 267/510 (52%), Positives = 349/510 (68%), Gaps = 11/510 (2%)

Query: 7   MIGPRGLIKKYEFVRVVVQCLYSLGYQKSASCLESESGVSYKSKGFERLEVQILNGDWDG 66
           M+G +  I++ EFVR++ Q LYSLGY ++A+ +E ESGV  +         ++L+G W+ 
Sbjct: 1   MMGSKKQIRRVEFVRIITQALYSLGYSRAAALVEEESGVPLQLPVVSDFRREVLDGRWEE 60

Query: 67  CIDTLIAITDLNDERRASVLFPVFKQCFLEYL-NRGDDSLALNVLRKRVSSLQMSKDTIH 125
            + TL  I  L DE      F + +Q FLE L +RGD   AL  LR  +S L +++  +H
Sbjct: 61  SVATLAKIGPLLDETHKLAAFLILQQKFLELLVDRGDVLGALRTLRTEISPLGVNRQRVH 120

Query: 126 NLASSMLC-LEGMNLGKID-EGVVLELRKRLLVELERLLPPPEVVPERRLEHLVETAVTS 183
            LAS ++C   G  L K++ +G   E R  LL +++ LLPP  ++PERRLEHLVE A+  
Sbjct: 121 ELASCVVCPTRGDILEKVEWKGSDTEARMALLEKIQALLPPHIMIPERRLEHLVEQALAV 180

Query: 184 QIDSCQYHNSS-VAISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSS 242
           Q + C +HNS+  A+SLY DH CGRDQIPTETVQ+L  H NEVW++QFS +G +LAS+S 
Sbjct: 181 QREGCIFHNSAETALSLYTDHQCGRDQIPTETVQVLEAHDNEVWYLQFSRDGRHLASASK 240

Query: 243 DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICK 302
           DC+AIIW+V++D  +  KHTL  H   VSFVAWSPDD+ +LTCG  E +KLWD  TG CK
Sbjct: 241 DCTAIIWEVVDDDFVRRKHTLAGHHKSVSFVAWSPDDSMILTCGTEEAVKLWDTATGECK 300

Query: 303 HTF--GDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLA 360
           HTF    HGF  +SCAWFPD K  V G+ D  K ++  D  G E++ W+  R+P+++DLA
Sbjct: 301 HTFQKASHGF--TSCAWFPDGKTFVTGAVD--KCMYRWDLSGAELEVWK-PRMPRIIDLA 355

Query: 361 VTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMW 420
           VTPDG N++ +  DKDIR+ NL    ER+I E+H ITSLSVS+D +  +VNL SQEIH+W
Sbjct: 356 VTPDGNNVVCICHDKDIRVFNLEDKTERLIEEDHSITSLSVSLDGRYLLVNLVSQEIHLW 415

Query: 421 DVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGH 480
           D+A     P KY GH Q +YVIRSCFGG D  FI SGSE+SQ+YIW+R N + +E+L GH
Sbjct: 416 DMALNSRSPCKYKGHRQGRYVIRSCFGGSDHAFIVSGSEDSQVYIWHRGNGELLEVLPGH 475

Query: 481 SMTVNCVSWNPKRPKMLASASDDHTIRIWG 510
           S TVNCVSWNP  P M ASASDDHTIRIWG
Sbjct: 476 SGTVNCVSWNPSNPHMFASASDDHTIRIWG 505

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168035605|ref|XP_001770300.1| predicted protein [Physcomitrella patens subsp. patens] gi|162678517|gb|EDQ64975.1| predicted protein [Physcomitrella patens subsp. patens]

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 270/511 (52%), Positives = 349/511 (68%), Gaps = 5/511 (0%)

Query: 3   NSSTMIGPRGLIKKYEFVRVVVQCLYSLGYQKSASCLESESGVSYKSKGFERLEVQILNG 62
           N    +G  G I+K EFVR++ Q L+SLGYQ++ + LE ESG+  +S   ++    IL G
Sbjct: 8   NDGETVGSHGQIRKVEFVRIIEQALFSLGYQQAGAVLEEESGIRLQSPAVQQFREDILAG 67

Query: 63  DWDGCIDTLIAITDLNDERRASVLFPVFKQCFLEYLNRGDDSLALNVLRKRVSSLQMSKD 122
            WD C+ TL  I  L +    + LF V +Q FLE L   + + AL  LR  +S L +S  
Sbjct: 68  RWDECVATLSEIGVLEESTYKAALFLVLQQKFLESLEASNTTAALETLRSEISPLGVSTS 127

Query: 123 TIHNLASSMLCLEGMNLGKID-EGVVLELRKRLLVELERLLPPPEVVPERRLEHLVETAV 181
            +H LAS ++C     L K   +G   E R+ LL EL++LLPP  +VPERRLEHL+E A+
Sbjct: 128 KVHQLASFIVCFPEDLLAKAQWKGAGQESRQSLLEELQQLLPPSIMVPERRLEHLIEVAL 187

Query: 182 TSQIDSCQYHNS-SVAISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASS 240
             Q ++C YHN+    +SLY DH C RDQIPT T+Q+L EH +EVWF+QFS++G YLASS
Sbjct: 188 QVQREACVYHNTLDHVLSLYSDHRCSRDQIPTRTLQVLDEHDDEVWFLQFSHDGYYLASS 247

Query: 241 SSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI 300
           S DC+AIIW+V+E   L +K+    H  PVSFVAWSPDDT LLTCGN EV+KLWD+ TG 
Sbjct: 248 SKDCTAIIWEVVEGDSLKVKYKFTGHSKPVSFVAWSPDDTMLLTCGNEEVVKLWDISTGQ 307

Query: 301 CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLA 360
           CK+T+       +SCAWFPD KR V G  D  K I+M D +G+E++AW+G R+P++ DLA
Sbjct: 308 CKYTYDKPNSCFTSCAWFPDGKRFVSGGGD--KCIYMWDLEGHELEAWKGARMPRINDLA 365

Query: 361 VTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMW 420
           +T DG +++S+   K+IRI NL    ERVI EE PITSLSVS + +  +VNL SQEIH+W
Sbjct: 366 ITTDGSHMVSICDHKNIRIYNLEEKTERVIEEEKPITSLSVSKNGRYLLVNLVSQEIHLW 425

Query: 421 DV-AGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSG 479
           D+ A   + P KY GH Q +YVIRSCFGG D  FI SGSE+SQ+YIW+R N + +++LSG
Sbjct: 426 DISAATKDLPKKYRGHKQGRYVIRSCFGGTDYAFIVSGSEDSQVYIWHRWNGELLDVLSG 485

Query: 480 HSMTVNCVSWNPKRPKMLASASDDHTIRIWG 510
           HS TVN VSWNP  P M ASASDDHTIRIWG
Sbjct: 486 HSGTVNSVSWNPVNPHMFASASDDHTIRIWG 516

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357146516|ref|XP_003574020.1| PREDICTED: WD repeat-containing protein 26-like [Brachypodium distachyon]

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 269/514 (52%), Positives = 345/514 (67%), Gaps = 11/514 (2%)

Query: 2   ENSSTMIGPRGLIKKYEFVRVVVQCLYSLGYQKSASCLESESGVSYKSKGFERLEVQILN 61
           E ++  +G RGL+ + EFVR++ Q LYSLGY+K+A+ LE+ESGV       +RL   +++
Sbjct: 16  EPTTRRLGARGLVDREEFVRLIAQSLYSLGYRKTAATLEAESGVPLYPPEHDRLLFDVMS 75

Query: 62  GDWDGCIDTLIAITDLNDERRASVLFPVFKQCFLEYLNRGDDS--LALNVLRKRVSSLQM 119
           G WD C   + ++  ++D  RA   F V++  FLE L  GDD   LA  VL +R++ L +
Sbjct: 76  GRWDACTAVIDSLAGISDRNRAVAEFLVWRGHFLELLGIGDDGVRLATEVLWRRIAPLGI 135

Query: 120 SKDTIHNLASSMLCLEGMNLGKIDEGVVLELRKRLLVELERLLPPPEVVPERRLEHLVET 179
            +  +H LA +++  EG     +    V E R  L ++L   LPP   VP  RLEHLVET
Sbjct: 136 DRRCVHWLARAIVSCEG----AVAPDAVAEWRIGLFLDLVEALPPWLRVPSGRLEHLVET 191

Query: 180 AVTSQIDSCQYHNSSVAISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLAS 239
           AV  Q+ SC +HN    ++L+EDH C  +QIP+E  QIL  HKNEVWFV+FSN+G YLAS
Sbjct: 192 AVIQQVASCIFHNLPDEVTLFEDHKCLEEQIPSECAQILCAHKNEVWFVRFSNDGNYLAS 251

Query: 240 SSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETG 299
           SSSDC+AIIWKV ED  LT K+ L  H+ P+SFV WSP+D  LLTCGN E LKLW+V+TG
Sbjct: 252 SSSDCTAIIWKVEEDDTLTKKYCLEGHKKPISFVVWSPNDRMLLTCGNGESLKLWNVKTG 311

Query: 300 ICKHTFGDH-GFIVSSCAWFPDSKRLVCGSSDTEKG---IFMCDCDGNEIKAWRGTRIPK 355
            C H FG     I++SCAWFP+S+++VC SS+ E     IF CD +G E++ W G RIPK
Sbjct: 312 ECCHKFGASVDRIIASCAWFPNSEKIVCASSEPESSPNVIFTCDLEGQELEVWAGERIPK 371

Query: 356 VLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQ 415
           V DLAVTPDG++LI V  + +I I  L    E  I E   I+SL VS D ++ IVNLNSQ
Sbjct: 372 VSDLAVTPDGQHLICVCPN-EIWIRELRKGREWKIPEREMISSLCVSGDGQSMIVNLNSQ 430

Query: 416 EIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIE 475
           EIH+W   G    P K+ GH Q K+VIRSCFGG D  FIASGSE+SQ+YIW R    PI+
Sbjct: 431 EIHLWKTNGSSSVPDKFKGHKQGKFVIRSCFGGSDSLFIASGSEDSQVYIWKRCMEMPIK 490

Query: 476 ILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
           +L GHSMTVNCVSWNP RP+MLASASDD T+RIW
Sbjct: 491 VLHGHSMTVNCVSWNPTRPQMLASASDDCTVRIW 524

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	517
TAIR|locus:2172432	523	AT5G43920 "AT5G43920" [Arabido	0.651	0.644	0.778	1.1e-187
TAIR|locus:2159562	589	AT5G08560 "AT5G08560" [Arabido	0.644	0.565	0.5	7.1e-109
UNIPROTKB|F1P3E7	684	WDR26 "Uncharacterized protein	0.808	0.611	0.392	9.4e-82
UNIPROTKB|Q9H7D7	661	WDR26 "WD repeat-containing pr	0.808	0.632	0.394	5.1e-81
UNIPROTKB|F1S8S6	660	WDR26 "Uncharacterized protein	0.808	0.633	0.394	5.1e-81
MGI|MGI:1923825	641	Wdr26 "WD repeat domain 26" [M	0.808	0.652	0.392	5.1e-81
ZFIN|ZDB-GENE-041014-277	576	wdr26b "WD repeat domain 26b"	0.941	0.845	0.369	8.5e-81
RGD|1565589	622	Wdr26 "WD repeat domain 26" [R	0.808	0.672	0.392	2e-79
UNIPROTKB|Q2TBM8	514	WDR26 "WD repeat domain 26" [B	0.808	0.813	0.394	2.8e-78
UNIPROTKB|F1PIR1	514	WDR26 "Uncharacterized protein	0.808	0.813	0.394	2.8e-78

TAIR|locus:2172432 AT5G43920 "AT5G43920" [Arabidopsis thaliana (taxid:3702)]

 Score = 1467 (521.5 bits), Expect = 1.1e-187, Sum P(2) = 1.1e-187
 Identities = 264/339 (77%), Positives = 306/339 (90%)

Query:   175 HLVETAVTSQIDSCQYHNSSVAISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNG 234
             HLVETAV  QID+C YHNS  A+SLY+DHCCGRDQIP+ETVQIL  HKNEVWFVQFSN+G
Sbjct:   177 HLVETAVMDQIDTCMYHNSCDAVSLYKDHCCGRDQIPSETVQILVAHKNEVWFVQFSNSG 236

Query:   235 EYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLW 294
             +YLA++SSDC+AIIWKVL+D+K+ LKHTL SHQNPVSFV+WSPDDTKLLTCGNAEVLKLW
Sbjct:   237 KYLATASSDCTAIIWKVLDDNKVELKHTLESHQNPVSFVSWSPDDTKLLTCGNAEVLKLW 296

Query:   295 DVETGICKHTFGDH--GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTR 352
             DV+TG+ +HTFG++  GF VSSCAWFPDS RLVCGSSD E+GI M D DGNEIKAWRGTR
Sbjct:   297 DVDTGVLRHTFGNNNTGFTVSSCAWFPDSTRLVCGSSDPERGIVMWDTDGNEIKAWRGTR 356

Query:   353 IPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNL 412
             IPKV+DLAVTPDGE++I+V SDK+IRILNL T  ERVISEE PITSLS+S D K FIVNL
Sbjct:   357 IPKVVDLAVTPDGESMITVFSDKEIRILNLETKVERVISEEQPITSLSISGDGKFFIVNL 416

Query:   413 NSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSK 472
             + QEIH+WD+AG+W++P K++GH Q+KYVIRSCFGGLD +FIASGSE+SQ+YIWN +N+K
Sbjct:   417 SCQEIHLWDLAGEWKQPLKFSGHRQSKYVIRSCFGGLDSSFIASGSEDSQVYIWNLKNTK 476

Query:   473 PIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGP 511
             P+E+LSGHSMTVNCVSWNPK P+MLASASDD TIRIWGP
Sbjct:   477 PLEVLSGHSMTVNCVSWNPKNPRMLASASDDQTIRIWGP 515

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

TAIR|locus:2159562 AT5G08560 "AT5G08560" [Arabidopsis thaliana (taxid:3702)]

 Score = 885 (316.6 bits), Expect = 7.1e-109, Sum P(2) = 7.1e-109
 Identities = 168/336 (50%), Positives = 227/336 (67%)

Query:   176 LVETAVTSQIDSCQYHNSSVA-ISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNG 234
             LVE ++  Q DSC +HN+  + +SLY DH CG+ QIP++T QIL  H +EVWF+QFS+NG
Sbjct:   227 LVENSLHIQRDSCVFHNTLDSDLSLYSDHQCGKHQIPSQTAQILESHTDEVWFLQFSHNG 286

Query:   235 EYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLW 294
             +YLASSS D +AIIW++  D  ++LKHTL  H  PV  + WSPDD ++LTCG  EV++ W
Sbjct:   287 KYLASSSKDQTAIIWEISADGHISLKHTLVGHHKPVIAILWSPDDRQVLTCGAEEVIRRW 346

Query:   295 DVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIP 354
             DV++G C H +   G    SC W+PD + ++ G +D  + I M D DG E + W+G R  
Sbjct:   347 DVDSGDCVHMYEKGGISPISCGWYPDGQGIIAGMTD--RSICMWDLDGREKECWKGQRTQ 404

Query:   355 KVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNS 414
             KV D+A+T DG+ L+SV  D  I + +     ER+I EE  ITS S+S D K  +VNL +
Sbjct:   405 KVSDIAMTDDGKWLVSVCKDSVISLFDREATVERLIEEEDMITSFSLSNDNKYILVNLLN 464

Query:   415 QEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPI 474
             QEI +W++ G  +   +Y GH +++++IRSCFGG    FIASGSE+SQ+YIW+R   K I
Sbjct:   465 QEIRLWNIEGDPKIVSRYKGHKRSRFIIRSCFGGYKQAFIASGSEDSQVYIWHRSTGKLI 524

Query:   475 EILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWG 510
               L GH+  VNCVSW+P    MLASASDD TIRIWG
Sbjct:   525 VELPGHAGAVNCVSWSPTNLHMLASASDDGTIRIWG 560

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0009630 "gravitropism" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009888 "tissue development" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0010638 "positive regulation of organelle organization" evidence=RCA

GO:0016926 "protein desumoylation" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA

UNIPROTKB|F1P3E7 WDR26 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 766 (274.7 bits), Expect = 9.4e-82, Sum P(2) = 9.4e-82
 Identities = 172/438 (39%), Positives = 250/438 (57%)

Query:    87 FPVFKQCFLEYLNRGDDSLALNVLRKRVSSLQMSKDTIHNLASSMLCLEGMNL-GKID-E 144
             F + +Q +LEYL  G    AL VLR  ++ L+ + + IH L+  ++C    +L  K + E
Sbjct:   236 FLLLQQKYLEYLEDGKVLEALQVLRCELTPLKYNTERIHVLSGYLMCSHAEDLRAKAEWE 295

Query:   145 GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHLVETAVTSQIDSCQYHNSSV-----AISL 199
             G                             +L+  AV  Q D C YHN+ +     ++SL
Sbjct:   296 GKGTASRSKLLDKLQTYLPPSVMLPPRRLQNLLRQAVELQRDRCLYHNTKLDSNLDSVSL 355

Query:   200 YEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDS-KLT 258
               DH C R Q P  T QILTEH NEVWF +FSN+G  LA+ S D + IIW+V  D+ +L 
Sbjct:   356 LIDHVCSRKQFPCYTQQILTEHCNEVWFCKFSNDGTKLATGSKDTTVIIWQVDPDTHQLK 415

Query:   259 LKHTLRSHQNPVSFVAWSPDDTKLLTCG--NAEVLKLWDVETGICKHTFGD-HGFIVSSC 315
             L  TL  H   VS++AWSPDD  L+ CG  +   L LW+V+TG  +      H   ++S 
Sbjct:   416 LLKTLEGHAYGVSYIAWSPDDNYLVACGPDDCSELWLWNVQTGELRTKMSQSHEDSLTSV 475

Query:   316 AWFPDSKRLVCGSSDTEKGIF-MCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSD 374
             AW PD KR V G    ++G F  CD +GN + +W G R+  +  L+   DG+ +++  + 
Sbjct:   476 AWNPDGKRFVTGG---QRGQFYQCDLNGNLLDSWEGVRVQCLWCLS---DGKTVLASDTH 529

Query:   375 KDIRILNLGTYAER-VISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYT 433
             + IR  N     +R ++ E+HPI S ++S + +  ++N+ +Q +H+WD+  +     KY 
Sbjct:   530 QRIRGYNFEDLTDRNIVQEDHPIMSFTISKNGRLALLNVATQGVHLWDLQDR-VLVRKYQ 588

Query:   434 GHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKR 493
             G +Q  Y I SCFGG +  FIASGSE+ ++YIW++R+  PI  L+GH+ TVNCVSWNP+ 
Sbjct:   589 GVTQGFYTIHSCFGGHNEDFIASGSEDHKVYIWHKRSELPIAELTGHTRTVNCVSWNPQI 648

Query:   494 PKMLASASDDHTIRIWGP 511
             P M+ASASDD T+RIWGP
Sbjct:   649 PSMMASASDDGTVRIWGP 666

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q9H7D7 WDR26 "WD repeat-containing protein 26" [Homo sapiens (taxid:9606)]

 Score = 765 (274.4 bits), Expect = 5.1e-81, Sum P(2) = 5.1e-81
 Identities = 173/438 (39%), Positives = 248/438 (56%)

Query:    87 FPVFKQCFLEYLNRGDDSLALNVLRKRVSSLQMSKDTIHNLASSMLCLEGMNL-GKID-E 144
             F + +Q +LEYL  G    AL VLR  ++ L+ + + IH L+  ++C    +L  K + E
Sbjct:   213 FLLLQQKYLEYLEDGKVLEALQVLRCELTPLKYNTERIHVLSGYLMCSHAEDLRAKAEWE 272

Query:   145 GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHLVETAVTSQIDSCQYHNSSV-----AISL 199
             G                              L+  AV  Q D C YHN+ +     ++SL
Sbjct:   273 GKGTASRSKLLDKLQTYLPPSVMLPPRRLQTLLRQAVELQRDRCLYHNTKLDNNLDSVSL 332

Query:   200 YEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLT- 258
               DH C R Q P  T QILTEH NEVWF +FSN+G  LA+ S D + IIW+V  D+ L  
Sbjct:   333 LIDHVCSRRQFPCYTQQILTEHCNEVWFCKFSNDGTKLATGSKDTTVIIWQVDPDTHLLK 392

Query:   259 LKHTLRSHQNPVSFVAWSPDDTKLLTCG--NAEVLKLWDVETGICKHTFGD-HGFIVSSC 315
             L  TL  H   VS++AWSPDD  L+ CG  +   L LW+V+TG  +      H   ++S 
Sbjct:   393 LLKTLEGHAYGVSYIAWSPDDNYLVACGPDDCSELWLWNVQTGELRTKMSQSHEDSLTSV 452

Query:   316 AWFPDSKRLVCGSSDTEKGIF-MCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSD 374
             AW PD KR V G    ++G F  CD DGN + +W G R+  +  L+   DG+ +++  + 
Sbjct:   453 AWNPDGKRFVTGG---QRGQFYQCDLDGNLLDSWEGVRVQCLWCLS---DGKTVLASDTH 506

Query:   375 KDIRILNLGTYAER-VISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYT 433
             + IR  N     +R ++ E+HPI S ++S + +  ++N+ +Q +H+WD+  +     KY 
Sbjct:   507 QRIRGYNFEDLTDRNIVQEDHPIMSFTISKNGRLALLNVATQGVHLWDLQDR-VLVRKYQ 565

Query:   434 GHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKR 493
             G +Q  Y I SCFGG +  FIASGSE+ ++YIW++R+  PI  L+GH+ TVNCVSWNP+ 
Sbjct:   566 GVTQGFYTIHSCFGGHNEDFIASGSEDHKVYIWHKRSELPIAELTGHTRTVNCVSWNPQI 625

Query:   494 PKMLASASDDHTIRIWGP 511
             P M+ASASDD T+RIWGP
Sbjct:   626 PSMMASASDDGTVRIWGP 643

GO:0005737 "cytoplasm" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|F1S8S6 WDR26 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 765 (274.4 bits), Expect = 5.1e-81, Sum P(2) = 5.1e-81
 Identities = 173/438 (39%), Positives = 248/438 (56%)

Query:    87 FPVFKQCFLEYLNRGDDSLALNVLRKRVSSLQMSKDTIHNLASSMLCLEGMNL-GKID-E 144
             F + +Q +LEYL  G    AL VLR  ++ L+ + + IH L+  ++C    +L  K + E
Sbjct:   212 FLLLQQKYLEYLEDGKVLEALQVLRCELTPLKYNTERIHVLSGYLMCSHAEDLRAKAEWE 271

Query:   145 GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHLVETAVTSQIDSCQYHNSSV-----AISL 199
             G                              L+  AV  Q D C YHN+ +     ++SL
Sbjct:   272 GKGTASRSKLLDKLQTYLPPSVMLPPRRLQTLLRQAVELQRDRCLYHNTKLDNNLDSVSL 331

Query:   200 YEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLT- 258
               DH C R Q P  T QILTEH NEVWF +FSN+G  LA+ S D + IIW+V  D+ L  
Sbjct:   332 LIDHVCSRRQFPCYTQQILTEHCNEVWFCKFSNDGTKLATGSKDTTVIIWQVDPDTHLLK 391

Query:   259 LKHTLRSHQNPVSFVAWSPDDTKLLTCG--NAEVLKLWDVETGICKHTFGD-HGFIVSSC 315
             L  TL  H   VS++AWSPDD  L+ CG  +   L LW+V+TG  +      H   ++S 
Sbjct:   392 LLKTLEGHAYGVSYIAWSPDDNYLVACGPDDCSELWLWNVQTGELRTKMSQSHEDSLTSV 451

Query:   316 AWFPDSKRLVCGSSDTEKGIF-MCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSD 374
             AW PD KR V G    ++G F  CD DGN + +W G R+  +  L+   DG+ +++  + 
Sbjct:   452 AWNPDGKRFVTGG---QRGQFYQCDLDGNLLDSWEGVRVQCLWCLS---DGKTVLASDTH 505

Query:   375 KDIRILNLGTYAER-VISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYT 433
             + IR  N     +R ++ E+HPI S ++S + +  ++N+ +Q +H+WD+  +     KY 
Sbjct:   506 QRIRGYNFEDLTDRNIVQEDHPIMSFTISKNGRLALLNVATQGVHLWDLQDR-VLVRKYQ 564

Query:   434 GHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKR 493
             G +Q  Y I SCFGG +  FIASGSE+ ++YIW++R+  PI  L+GH+ TVNCVSWNP+ 
Sbjct:   565 GVTQGFYTIHSCFGGHNEDFIASGSEDHKVYIWHKRSELPIAELTGHTRTVNCVSWNPQI 624

Query:   494 PKMLASASDDHTIRIWGP 511
             P M+ASASDD T+RIWGP
Sbjct:   625 PSMMASASDDGTVRIWGP 642

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:1923825 Wdr26 "WD repeat domain 26" [Mus musculus (taxid:10090)]

 Score = 765 (274.4 bits), Expect = 5.1e-81, Sum P(2) = 5.1e-81
 Identities = 172/438 (39%), Positives = 249/438 (56%)

Query:    87 FPVFKQCFLEYLNRGDDSLALNVLRKRVSSLQMSKDTIHNLASSMLCLEGMNL-GKID-E 144
             F + +Q +LEYL  G    AL VLR  ++ L+ + + IH L+  ++C    +L  K + E
Sbjct:   193 FLLLQQKYLEYLEDGKVLEALQVLRCELTPLKYNTERIHVLSGYLMCSHAEDLRAKAEWE 252

Query:   145 GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHLVETAVTSQIDSCQYHNSSV-----AISL 199
             G                              L+  AV  Q D C YHN+ +     ++SL
Sbjct:   253 GKGTASRSKLLDKLQTYLPPSVMLPPRRLQTLLRQAVELQRDRCLYHNTKLDNNLDSVSL 312

Query:   200 YEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLT- 258
               DH C R Q P  T QILTEH NEVWF +FSN+G  LA+ S D + IIW+V  D+ L  
Sbjct:   313 LIDHVCSRRQFPCYTQQILTEHCNEVWFCKFSNDGTKLATGSKDTTVIIWQVDPDTHLLK 372

Query:   259 LKHTLRSHQNPVSFVAWSPDDTKLLTCG--NAEVLKLWDVETGICKHTFGD-HGFIVSSC 315
             L  TL  H   VS++AWSPDD+ L+ CG  +   L LW+V+TG  +      H   ++S 
Sbjct:   373 LLKTLEGHAYGVSYIAWSPDDSYLVACGPDDCSELWLWNVQTGELRTKMSQSHEDSLTSV 432

Query:   316 AWFPDSKRLVCGSSDTEKGIF-MCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSD 374
             AW PD KR V G    ++G F  CD DGN + +W G R+  +  L+   DG+ +++  + 
Sbjct:   433 AWNPDGKRFVTGG---QRGQFYQCDLDGNLLDSWEGVRVQCLWCLS---DGKTVLASDTH 486

Query:   375 KDIRILNLGTYAER-VISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYT 433
             + +R  N     +R ++ E+HPI S ++S + +  ++N+ +Q +H+WD+  +     KY 
Sbjct:   487 QRVRGYNFEDLTDRNIVQEDHPIMSFTISKNGRLALLNVATQGVHLWDLQDR-VLVRKYQ 545

Query:   434 GHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKR 493
             G +Q  Y I SCFGG +  FIASGSE+ ++YIW++R+  PI  L+GH+ TVNCVSWNP+ 
Sbjct:   546 GVTQGFYTIHSCFGGHNEDFIASGSEDHKVYIWHKRSELPIAELTGHTRTVNCVSWNPQI 605

Query:   494 PKMLASASDDHTIRIWGP 511
             P M+ASASDD T+RIWGP
Sbjct:   606 PSMMASASDDGTVRIWGP 623

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISO

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-041014-277 wdr26b "WD repeat domain 26b" [Danio rerio (taxid:7955)]

 Score = 811 (290.5 bits), Expect = 8.5e-81, P = 8.5e-81
 Identities = 188/509 (36%), Positives = 277/509 (54%)

Query:    18 EFVRVVVQCLYSLGYQKSASCLESESGVSYKSKGFERLEVQILNGDWDGCIDTLIAITDL 77
             + +R++ Q L+ LG  ++   L  ESG   +     +    ++ G+WD   + L  +  L
Sbjct:    54 DVIRLIGQHLHGLGLNQTVDLLMQESGCRLEHSSATKFRNHVMEGEWDKAENDLNELKAL 113

Query:    78 NDERRASVL--FPVFKQCFLEYLNRGDDSLALNVLRKRVSSLQMSKDTIHNLASSMLCLE 135
                  A V   F + +Q +LEYL  G    AL VLR  ++ L+ + D IH L+  ++C  
Sbjct:   114 MHSPNAIVRMKFLLLQQKYLEYLEDGKVLEALQVLRGELTPLKYNTDRIHVLSGYLMCSH 173

Query:   136 GMNL-GKID-EGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHLVETAVTSQIDSCQYHNS 193
               +L  K + EG                              L+  AV  Q D C YHN+
Sbjct:   174 AEDLKAKAEWEGKGAGSRCRLLDKLQTYLPPSVMLPPRRLQTLLRQAVELQRDRCLYHNT 233

Query:   194 SV-----AISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAII 248
              +     ++SL  DH C R Q P  T QILTEH NEVWF +FSN+G  LA+ S D + II
Sbjct:   234 KLDSSLDSVSLLLDHVCSRKQFPCYTQQILTEHCNEVWFCKFSNDGTKLATGSKDTTVII 293

Query:   249 WKVLEDS-KLTLKHTLRSHQNPVSFVAWSPDDTKLLTCG--NAEVLKLWDVETGICKHTF 305
             W+V  D+ +L L  TL  H   VS++AWSPDD  L+ CG  +   L LW+V+TG  +   
Sbjct:   294 WQVEPDTHQLKLLRTLEGHAYGVSYLAWSPDDVYLIACGPDDCSELWLWNVQTGELRTKM 353

Query:   306 GD-HGFIVSSCAWFPDSKRLVCGSSDTEKGIF-MCDCDGNEIKAWRGTRIPKVLDLAVTP 363
                H   ++S AW PD KR V G    ++G F  CD DGN +++W G R+  +  +    
Sbjct:   354 SQSHEDSLTSVAWNPDGKRFVTGG---QRGQFYQCDLDGNLLESWEGVRVQCLWCMG--- 407

Query:   364 DGENLISVLSDKDIRILNLGTYAER-VISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDV 422
             DG  +++  + + IR  +     +R ++ E+HPI S +VS + +  ++N+ +Q +H+WD+
Sbjct:   408 DGRTVLASDTHQRIRGYSFEDLTDRNIVQEDHPIMSFTVSKNGRLALLNVATQGVHLWDL 467

Query:   423 AGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSM 482
               +     KY G +Q  Y I SCFGG +  FIASGSE+ ++YIW++R+  PI  L+GH+ 
Sbjct:   468 QDR-VLVRKYQGVTQGFYTIHSCFGGHNEDFIASGSEDHKVYIWHKRSELPIVELTGHTR 526

Query:   483 TVNCVSWNPKRPKMLASASDDHTIRIWGP 511
             TVNCVSWNP  P ++ASASDD T+RIWGP
Sbjct:   527 TVNCVSWNPCIPSLMASASDDGTVRIWGP 555

GO:0005737 "cytoplasm" evidence=IEA

RGD|1565589 Wdr26 "WD repeat domain 26" [Rattus norvegicus (taxid:10116)]

 Score = 765 (274.4 bits), Expect = 2.0e-79, Sum P(2) = 2.0e-79
 Identities = 172/438 (39%), Positives = 249/438 (56%)

Query:    87 FPVFKQCFLEYLNRGDDSLALNVLRKRVSSLQMSKDTIHNLASSMLCLEGMNL-GKID-E 144
             F + +Q +LEYL  G    AL VLR  ++ L+ + + IH L+  ++C    +L  K + E
Sbjct:   174 FLLLQQKYLEYLEDGKVLEALQVLRCELTPLKYNTERIHVLSGYLMCSHAEDLRAKAEWE 233

Query:   145 GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHLVETAVTSQIDSCQYHNSSV-----AISL 199
             G                              L+  AV  Q D C YHN+ +     ++SL
Sbjct:   234 GKGAASRSKLLDKLQTYLPPSVMLPPRRLQTLLRQAVELQRDRCLYHNTKLDNNLDSVSL 293

Query:   200 YEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLT- 258
               DH C R Q P  T QILTEH NEVWF +FSN+G  LA+ S D + I+W+V  D+ L  
Sbjct:   294 LIDHVCSRRQFPCYTQQILTEHCNEVWFCKFSNDGTKLATGSKDTTVIVWQVDADTHLLK 353

Query:   259 LKHTLRSHQNPVSFVAWSPDDTKLLTCG--NAEVLKLWDVETGICKHTFGD-HGFIVSSC 315
             L  TL  H   VS++AWSPDD+ L+ CG  +   L LW+V+TG  +      H   ++S 
Sbjct:   354 LLKTLEGHAYGVSYIAWSPDDSYLVACGPDDCSELWLWNVQTGELRTKMSQSHEDSLTSV 413

Query:   316 AWFPDSKRLVCGSSDTEKGIF-MCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSD 374
             AW PD KR V G    ++G F  CD DGN + +W G R+  +  L+   DG+ +++  + 
Sbjct:   414 AWNPDGKRFVTGG---QRGQFYQCDLDGNLLDSWEGVRVQCLWCLS---DGKTVLASDTH 467

Query:   375 KDIRILNLGTYAER-VISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYT 433
             + IR  N     +R ++ E+HPI S ++S + +  ++N+ +Q +H+WD+  +     KY 
Sbjct:   468 QRIRGYNFEDLTDRNIVQEDHPIMSFTISKNGRLALLNVATQGVHLWDLQDR-VLVRKYQ 526

Query:   434 GHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKR 493
             G +Q  Y I SCFGG +  FIASGSE+ ++YIW++R+  PI  L+GH+ TVNCVSWNP+ 
Sbjct:   527 GVTQGFYTIHSCFGGHNEDFIASGSEDHKVYIWHKRSELPIAELTGHTRTVNCVSWNPQI 586

Query:   494 PKMLASASDDHTIRIWGP 511
             P M+ASASDD T+RIWGP
Sbjct:   587 PSMMASASDDGTVRIWGP 604

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|Q2TBM8 WDR26 "WD repeat domain 26" [Bos taurus (taxid:9913)]

 Score = 765 (274.4 bits), Expect = 2.8e-78, Sum P(2) = 2.8e-78
 Identities = 173/438 (39%), Positives = 248/438 (56%)

Query:    87 FPVFKQCFLEYLNRGDDSLALNVLRKRVSSLQMSKDTIHNLASSMLCLEGMNL-GKID-E 144
             F + +Q +LEYL  G    AL VLR  ++ L+ + + IH L+  ++C    +L  K + E
Sbjct:    66 FLLLQQKYLEYLEDGKVLEALQVLRCELTPLKYNTERIHVLSGYLMCSHAEDLRAKAEWE 125

Query:   145 GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHLVETAVTSQIDSCQYHNSSV-----AISL 199
             G                              L+  AV  Q D C YHN+ +     ++SL
Sbjct:   126 GKGTASRSKLLDKLQTYLPPSVMLPPRRLQTLLRQAVELQRDRCLYHNTKLDSNLDSVSL 185

Query:   200 YEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLT- 258
               DH C R Q P  T QILTEH NEVWF +FSN+G  LA+ S D + IIW+V  D+ L  
Sbjct:   186 LIDHVCSRRQFPCYTQQILTEHCNEVWFCKFSNDGTKLATGSKDTTVIIWQVDPDTHLLK 245

Query:   259 LKHTLRSHQNPVSFVAWSPDDTKLLTCG--NAEVLKLWDVETGICKHTFGD-HGFIVSSC 315
             L  TL  H   VS++AWSPDD  L+ CG  +   L LW+V+TG  +      H   ++S 
Sbjct:   246 LLKTLEGHAYGVSYIAWSPDDNYLVACGPDDCSELWLWNVQTGELRTKMSQSHEDSLTSV 305

Query:   316 AWFPDSKRLVCGSSDTEKGIF-MCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSD 374
             AW PD KR V G    ++G F  CD DGN + +W G R+  +  L+   DG+ +++  + 
Sbjct:   306 AWNPDGKRFVTGG---QRGQFYQCDLDGNLLDSWEGVRVQCLWCLS---DGKTVLASDTH 359

Query:   375 KDIRILNLGTYAER-VISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYT 433
             + IR  N     +R ++ E+HPI S ++S + +  ++N+ +Q +H+WD+  +     KY 
Sbjct:   360 QRIRGYNFEDLTDRNIVQEDHPIMSFTISKNGRLALLNVATQGVHLWDLQDR-VLVRKYQ 418

Query:   434 GHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKR 493
             G +Q  Y I SCFGG +  FIASGSE+ ++YIW++R+  PI  L+GH+ TVNCVSWNP+ 
Sbjct:   419 GVTQGFYTIHSCFGGHNEDFIASGSEDHKVYIWHKRSELPIAELTGHTRTVNCVSWNPQI 478

Query:   494 PKMLASASDDHTIRIWGP 511
             P M+ASASDD T+RIWGP
Sbjct:   479 PSMMASASDDGTVRIWGP 496

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1PIR1 WDR26 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 765 (274.4 bits), Expect = 2.8e-78, Sum P(2) = 2.8e-78
 Identities = 173/438 (39%), Positives = 248/438 (56%)

Query:    87 FPVFKQCFLEYLNRGDDSLALNVLRKRVSSLQMSKDTIHNLASSMLCLEGMNL-GKID-E 144
             F + +Q +LEYL  G    AL VLR  ++ L+ + + IH L+  ++C    +L  K + E
Sbjct:    66 FLLLQQKYLEYLEDGKVLEALQVLRCELTPLKYNTERIHVLSGYLMCSHAEDLRAKAEWE 125

Query:   145 GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHLVETAVTSQIDSCQYHNSSV-----AISL 199
             G                              L+  AV  Q D C YHN+ +     ++SL
Sbjct:   126 GKGTASRSKLLDKLQTYLPPSVMLPPRRLQTLLRQAVELQRDRCLYHNTKLDNNLDSVSL 185

Query:   200 YEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLT- 258
               DH C R Q P  T QILTEH NEVWF +FSN+G  LA+ S D + IIW+V  D+ L  
Sbjct:   186 LIDHVCSRRQFPCYTQQILTEHCNEVWFCKFSNDGTKLATGSKDTTVIIWQVDPDTHLLK 245

Query:   259 LKHTLRSHQNPVSFVAWSPDDTKLLTCG--NAEVLKLWDVETGICKHTFGD-HGFIVSSC 315
             L  TL  H   VS++AWSPDD  L+ CG  +   L LW+V+TG  +      H   ++S 
Sbjct:   246 LLKTLEGHAYGVSYIAWSPDDNYLVACGPDDCSELWLWNVQTGELRTKMSQSHEDSLTSV 305

Query:   316 AWFPDSKRLVCGSSDTEKGIF-MCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSD 374
             AW PD KR V G    ++G F  CD DGN + +W G R+  +  L+   DG+ +++  + 
Sbjct:   306 AWNPDGKRFVTGG---QRGQFYQCDLDGNLLDSWEGVRVQCLWCLS---DGKTVLASDTH 359

Query:   375 KDIRILNLGTYAER-VISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYT 433
             + IR  N     +R ++ E+HPI S ++S + +  ++N+ +Q +H+WD+  +     KY 
Sbjct:   360 QRIRGYNFEDLTDRNIVQEDHPIMSFTISKNGRLALLNVATQGVHLWDLQDR-VLVRKYQ 418

Query:   434 GHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKR 493
             G +Q  Y I SCFGG +  FIASGSE+ ++YIW++R+  PI  L+GH+ TVNCVSWNP+ 
Sbjct:   419 GVTQGFYTIHSCFGGHNEDFIASGSEDHKVYIWHKRSELPIAELTGHTRTVNCVSWNPQI 478

Query:   494 PKMLASASDDHTIRIWGP 511
             P M+ASASDD T+RIWGP
Sbjct:   479 PSMMASASDDGTVRIWGP 496

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9UT85	YIPC_SCHPO	No assigned EC number	0.3379	0.9245	0.9428	yes	no
Q5SP67	WDR26_DANRE	No assigned EC number	0.3897	0.9439	0.8472	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00028473001	SubName- Full=Chromosome chr7 scaffold_44, whole genome shotgun sequence; (520 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00023185001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (344 aa)			•						0.469
	GSVIVG00036790001	SubName- Full=Chromosome chr4 scaffold_83, whole genome shotgun sequence; (310 aa)			•						0.465
	GSVIVG00003115001	SubName- Full=Chromosome undetermined scaffold_139, whole genome shotgun sequence; (352 aa)			•						0.455
	GSVIVG00003091001	SubName- Full=Chromosome undetermined scaffold_139, whole genome shotgun sequence; (250 aa)			•						0.454
	GSVIVG00014835001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (448 aa)			•						0.449
	GSVIVG00017915001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (459 aa)			•						0.448
	GSVIVG00014488001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (380 aa)			•						0.448
	GSVIVG00030720001	SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (516 aa)			•						0.444
	GSVIVG00023743001	SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (298 aa)			•						0.439
	GSVIVG00001478001	SubName- Full=Chromosome chr3 scaffold_117, whole genome shotgun sequence; (379 aa)			•						0.438

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	517
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-49
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-31
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-28
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-28
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-27
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	7e-24
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-20
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-20
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	8e-08
smart00320	40	smart00320, WD40, WD40 repeats	1e-07
smart00320	40	smart00320, WD40, WD40 repeats	1e-05
smart00668	58	smart00668, CTLH, C-terminal to LisH motif	1e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-05
smart00320	40	smart00320, WD40, WD40 repeats	2e-05
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	1e-04
smart00320	40	smart00320, WD40, WD40 repeats	6e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.002
TIGR02800	417	TIGR02800, propeller_TolB, tol-pal system beta pro	0.004

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  170 bits (432), Expect = 6e-49
 Identities = 95/298 (31%), Positives = 144/298 (48%), Gaps = 14/298 (4%)

Query: 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVA 274
            + L  H   V  V FS +G+ LA+ S D +  +W +       L  TL+ H  PV  VA
Sbjct: 2   RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDL---ETGELLRTLKGHTGPVRDVA 58

Query: 275 WSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKG 334
            S D T L +  + + ++LWD+ETG C  T   H   VSS A+ PD + L   S D    
Sbjct: 59  ASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIK 118

Query: 335 IFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGT-YAERVIS-E 392
           ++  +  G  +   RG     V  +A +PDG  + S   D  I++ +L T      ++  
Sbjct: 119 VWDVE-TGKCLTTLRGHTDW-VNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGH 176

Query: 393 EHPITSLSVSVDCKNFIVNLNSQEIHMWDV-AGKWEKPFKYTGHSQNKYVIRSCFGGLDG 451
              + S++ S D +  + + +   I +WD+  GK        GH     V    F   DG
Sbjct: 177 TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGT--LRGH--ENGVNSVAFSP-DG 231

Query: 452 TFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
             +ASGSE+  I +W+ R  + ++ LSGH+ +V  ++W+P   K LAS S D TIRIW
Sbjct: 232 YLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPD-GKRLASGSADGTIRIW 288

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  122 bits (308), Expect = 2e-31
 Identities = 69/253 (27%), Positives = 102/253 (40%), Gaps = 51/253 (20%)

Query: 259 LKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWF 318
           L+ TL+ H   V+ VA+SPD   L T      +K+WD+ETG    T   H   V   A  
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60

Query: 319 PDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIR 378
            D   L  GS                                            SDK IR
Sbjct: 61  ADGTYLASGS--------------------------------------------SDKTIR 76

Query: 379 ILNLGTYAERVISEEH--PITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHS 436
           + +L T         H   ++S++ S D +    +   + I +WDV          T   
Sbjct: 77  LWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE---TGKCLTTLRG 133

Query: 437 QNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKM 496
              +V  S     DGTF+AS S++  I +W+ R  K +  L+GH+  VN V+++P   + 
Sbjct: 134 HTDWV-NSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDG-EK 191

Query: 497 LASASDDHTIRIW 509
           L S+S D TI++W
Sbjct: 192 LLSSSSDGTIKLW 204

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  114 bits (288), Expect = 1e-28
 Identities = 70/211 (33%), Positives = 100/211 (47%), Gaps = 7/211 (3%)

Query: 213 ETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSF 272
           E V+ LT H + V  V FS +G  L+SSS D +  +W V          TLR H + V+ 
Sbjct: 84  ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDV---ETGKCLTTLRGHTDWVNS 140

Query: 273 VAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTE 332
           VA+SPD T + +      +KLWD+ TG C  T   H   V+S A+ PD ++L+  SSD  
Sbjct: 141 VAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGT 200

Query: 333 KGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAE-RVIS 391
             I + D    +           V  +A +PDG  L S   D  IR+ +L T    + +S
Sbjct: 201 --IKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS 258

Query: 392 E-EHPITSLSVSVDCKNFIVNLNSQEIHMWD 421
              + +TSL+ S D K          I +WD
Sbjct: 259 GHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  115 bits (289), Expect = 8e-28
 Identities = 90/327 (27%), Positives = 135/327 (41%), Gaps = 12/327 (3%)

Query: 191 HNSSVAISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWK 250
            +S   I L          +P  +  +L  H++ +  + FS +GE L S SSD +  +W 
Sbjct: 34  GSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWD 93

Query: 251 VLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAE--VLKLWDVET-GICKHTFGD 307
           +    KL          +       SPD   +L   ++    +KLWD+ T G    T   
Sbjct: 94  LDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEG 153

Query: 308 HGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGEN 367
           H   V+S A+ PD K L  GSS            G  +    G     V  LA +PDG  
Sbjct: 154 HSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHT-DPVSSLAFSPDGGL 212

Query: 368 LI-SVLSDKDIRILNL--GTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAG 424
           LI S  SD  IR+ +L  G      +S        S S D        +   I +WD+  
Sbjct: 213 LIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRS 272

Query: 425 KWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILS--GHSM 482
                   +GHS    V+   F   DG  +ASGS +  + +W+    K +  L+  GH  
Sbjct: 273 SSSLLRTLSGHSS--SVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEG 329

Query: 483 TVNCVSWNPKRPKMLASASDDHTIRIW 509
            V+ +S++P    +++  SDD TIR+W
Sbjct: 330 PVSSLSFSPDGSLLVSGGSDDGTIRLW 356

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  113 bits (282), Expect = 6e-27
 Identities = 91/309 (29%), Positives = 142/309 (45%), Gaps = 19/309 (6%)

Query: 209 QIPTETVQILTEHKNEVWFVQFSNNGEYLASSSS-DCSAIIWKVLEDSKLTLKHTLRSHQ 267
             P + ++ L  H   V  + FS +G+ LAS SS D +  +W +     L    TL  H 
Sbjct: 142 STPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPL---STLAGHT 198

Query: 268 NPVSFVAWSPDDTK-LLTCGNAEVLKLWDVETGICKH-TFGDHGFIVSSCAWFPDSKRLV 325
           +PVS +A+SPD    + +  +   ++LWD+ TG     T   H   V S  + PD   L 
Sbjct: 199 DPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS-FSPDGSLLA 257

Query: 326 CGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGT- 384
            GSSD    ++      + ++   G     VL +A +PDG+ L S  SD  +R+ +L T 
Sbjct: 258 SGSSDGTIRLWDLRSSSSLLRTLSGHSSS-VLSVAFSPDGKLLASGSSDGTVRLWDLETG 316

Query: 385 ---YAERVISEEHPITSLSVSVDCKNFIVNL-NSQEIHMWDVAGKWEKPFKYTGHSQNKY 440
               +  +   E P++SLS S D    +    +   I +WD+           GHS    
Sbjct: 317 KLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPL-KTLEGHSNVLS 375

Query: 441 VIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASA 500
           V  S     DG  ++SGS +  + +W+      +  L GH+  V  + ++P   K LAS 
Sbjct: 376 VSFS----PDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSP-DGKSLASG 430

Query: 501 SDDHTIRIW 509
           S D+TIR+W
Sbjct: 431 SSDNTIRLW 439

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  104 bits (258), Expect = 7e-24
 Identities = 79/292 (27%), Positives = 130/292 (44%), Gaps = 12/292 (4%)

Query: 223 NEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKL 282
           +++       N   LASSS D +  +W +   +   L  TL  H   V+ +A+SPD   L
Sbjct: 113 SKLALSSPDGNSILLASSSLDGTVKLWDL--STPGKLIRTLEGHSESVTSLAFSPDGKLL 170

Query: 283 LTCGNA-EVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD 341
            +  +    +KLWD+ TG    T   H   VSS A+ PD   L+   S     I + D  
Sbjct: 171 ASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSD-GTIRLWDLS 229

Query: 342 GNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERV---ISEEHPITS 398
             ++     +     +  + +PDG  L S  SD  IR+ +L + +  +         + S
Sbjct: 230 TGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLS 289

Query: 399 LSVSVDCKNFIVNLNSQEIHMWDVA-GKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASG 457
           ++ S D K      +   + +WD+  GK        GH     V    F       ++ G
Sbjct: 290 VAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHE--GPVSSLSFSPDGSLLVSGG 347

Query: 458 SENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
           S++  I +W+ R  KP++ L GHS  V  VS++P   ++++S S D T+R+W
Sbjct: 348 SDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSPD-GRVVSSGSTDGTVRLW 397

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 93.2 bits (230), Expect = 3e-20
 Identities = 91/294 (30%), Positives = 144/294 (48%), Gaps = 20/294 (6%)

Query: 230 FSNNGEYLASSSSDCSAIIWKVLEDS----KLTLKHTLRSHQNPVSFVAWSPDDTKLLTC 285
             N+   L+  SS+   ++  +L DS           LR H++ ++ +A+SPD   LL+ 
Sbjct: 24  SLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSG 83

Query: 286 GNAEVLKLWDVETG--ICKHTFGDHGFIVSSCAWF-PDSKRLVCGSSDTEKGIFMCDC-- 340
            +   +KLWD++ G  + K   G H   VS  A   PD   ++  SS  +  + + D   
Sbjct: 84  SSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLST 143

Query: 341 DGNEIKAWRGTRIPKVLDLAVTPDGENLISVLS-DKDIRILNLGTYAERVISEEH--PIT 397
            G  I+   G     V  LA +PDG+ L S  S D  I++ +L T         H  P++
Sbjct: 144 PGKLIRTLEGHS-ESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVS 202

Query: 398 SLSVSVDCKNFIVNLNSQ-EIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIAS 456
           SL+ S D    I + +S   I +WD++         +GHS +     S F   DG+ +AS
Sbjct: 203 SLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVV---SSF-SPDGSLLAS 258

Query: 457 GSENSQIYIWN-RRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
           GS +  I +W+ R +S  +  LSGHS +V  V+++P   K+LAS S D T+R+W
Sbjct: 259 GSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPD-GKLLASGSSDGTVRLW 311

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 92.5 bits (228), Expect = 5e-20
 Identities = 70/300 (23%), Positives = 120/300 (40%), Gaps = 11/300 (3%)

Query: 183 SQIDSCQYHNSSVAISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGE-YLASSS 241
           + +          + S  +      D    + +  L  H + V  + FS +G   +AS S
Sbjct: 159 TSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS 218

Query: 242 SDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETG-I 300
           SD +  +W +   +   L+ TL  H + V   ++SPD + L +  +   ++LWD+ +   
Sbjct: 219 SDGTIRLWDL--STGKLLRSTLSGHSDSVV-SSFSPDGSLLASGSSDGTIRLWDLRSSSS 275

Query: 301 CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLA 360
              T   H   V S A+ PD K L  GSSD    ++  +                V  L+
Sbjct: 276 LLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLS 335

Query: 361 VTPDGENLISVLS-DKDIRILNLGT-YAERVISEEHPITSLSVSVDCKNFIVNLNSQEIH 418
            +PDG  L+S  S D  IR+ +L T    + +     + S+S S D +          + 
Sbjct: 336 FSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVR 395

Query: 419 MWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILS 478
           +WD++            S     + S     DG  +ASGS ++ I +W+ + S      S
Sbjct: 396 LWDLSTGSLLRNLDGHTS----RVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFS 451

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 48.1 bits (115), Expect = 8e-08
 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 472 KPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
           K +  L GH+  V  V+++P    +LAS SDD T+R+W
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDG-NLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 47.3 bits (113), Expect = 1e-07
 Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)

Query: 470 NSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
           + + ++ L GH+  V  V+++P   K LAS SDD TI++W
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDG-KYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 16/40 (40%), Positives = 22/40 (55%)

Query: 256 KLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWD 295
              L  TL+ H  PV+ VA+SPD   L +  +   +KLWD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|128914 smart00668, CTLH, C-terminal to LisH motif

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 17/50 (34%), Positives = 28/50 (56%)

Query: 53  ERLEVQILNGDWDGCIDTLIAITDLNDERRASVLFPVFKQCFLEYLNRGD 102
           +R+   IL GDWD  ++ L ++     ER + + F + KQ FLE + +G 
Sbjct: 6   KRIRELILKGDWDEALEWLSSLKPPLLERNSKLEFELRKQKFLELVRQGK 55

Alpha-helical motif of unknown function. Length = 58

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 41.2 bits (97), Expect = 2e-05
 Identities = 14/38 (36%), Positives = 22/38 (57%)

Query: 258 TLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWD 295
            L  TL+ H  PV+ VA+SPD   L +  +   +++WD
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 41.2 bits (97), Expect = 2e-05
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 213 ETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWK 250
           + ++ L  H   V  V FS +G  LAS S D +  +W 
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 14/36 (38%), Positives = 20/36 (55%)

Query: 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWK 250
           ++ L  H   V  V FS +G+YLAS S D +  +W 
Sbjct: 5   LKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 44.2 bits (104), Expect = 1e-04
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 8/64 (12%)

Query: 454 IASGSENSQIYIWNRRNSK--------PIEILSGHSMTVNCVSWNPKRPKMLASASDDHT 505
           +ASGSE+  I +W   ++         P  IL GH   ++ + WNP    ++ S+  D  
Sbjct: 90  LASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSF 149

Query: 506 IRIW 509
           + IW
Sbjct: 150 VNIW 153

Length = 568

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 37.3 bits (87), Expect = 6e-04
 Identities = 13/33 (39%), Positives = 16/33 (48%)

Query: 298 TGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSD 330
           +G    T   H   V+S A+ PD K L  GS D
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDD 33

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 35.8 bits (83), Expect = 0.002
 Identities = 12/32 (37%), Positives = 14/32 (43%)

Query: 299 GICKHTFGDHGFIVSSCAWFPDSKRLVCGSSD 330
           G    T   H   V+S A+ PD   L  GS D
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDD 32

Length = 39

>gnl|CDD|234019 TIGR02800, propeller_TolB, tol-pal system beta propeller repeat protein TolB

 Score = 39.6 bits (93), Expect = 0.004
 Identities = 48/199 (24%), Positives = 86/199 (43%), Gaps = 28/199 (14%)

Query: 215 VQILTEHKNEVWFVQFSNNGEYLASSS--SDCSAIIWKVLEDSKLTLKHTLRSHQNPVSF 272
            Q +T  +  +    +S +G+ LA  S  S    I  + L   +   +  + S       
Sbjct: 182 PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ---REKVASFPGMNGA 238

Query: 273 VAWSPDDTKLLTC----GNAEVLKLWDVETG-ICKHTFGDHGFIVSSCAWFPDSKRLVCG 327
            A+SPD +KL       GN ++  + D++   + + T G    I +  +W PD K +   
Sbjct: 239 PAFSPDGSKLAVSLSKDGNPDIYVM-DLDGKQLTRLTNGPG--IDTEPSWSPDGKSIAF- 294

Query: 328 SSDTEKG--IFMCDCDGNEIK--AWRGTRIPKVLDLAVTPDGENLISVLSDK---DIRIL 380
           +SD      I+M D DG E +   +RG         + +PDG+ +  V  +    +I ++
Sbjct: 295 TSDRGGSPQIYMMDADGGEARRLTFRGNY---NASPSWSPDGDLIAFVHREGGGFNIAVM 351

Query: 381 NLGTYAERVISE----EHP 395
           +L    ERV+++    E P
Sbjct: 352 DLDGGGERVLTDTGLDESP 370

Members of this protein family are the TolB periplasmic protein of Gram-negative bacteria. TolB is part of the Tol-Pal (peptidoglycan-associated lipoprotein) multiprotein complex, comprising five envelope proteins, TolQ, TolR, TolA, TolB and Pal, which form two complexes. The TolQ, TolR and TolA inner-membrane proteins interact via their transmembrane domains. The {beta}-propeller domain of the periplasmic protein TolB is responsible for its interaction with Pal. TolB also interacts with the outer-membrane peptidoglycan-associated proteins Lpp and OmpA. TolA undergoes a conformational change in response to changes in the proton-motive force, and interacts with Pal in an energy-dependent manner. The C-terminal periplasmic domain of TolA also interacts with the N-terminal domain of TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi , Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 417

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	517
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0289	506	consensus mRNA splicing factor [General function p	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0772	641	consensus Uncharacterized conserved protein, conta	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	99.98
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.98
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.98
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.98
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.97
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.97
KOG0641	350	consensus WD40 repeat protein [General function pr	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.97
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.97
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.97
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG1273	405	consensus WD40 repeat protein [General function pr	99.97
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.97
KOG1539	910	consensus WD repeat protein [General function pred	99.96
PTZ00420	568	coronin; Provisional	99.96
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.96
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.96
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.96
PTZ00421	493	coronin; Provisional	99.96
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.96
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.96
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.96
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.96
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.96
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.96
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.96
KOG2096	420	consensus WD40 repeat protein [General function pr	99.96
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.95
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.95
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.95
PTZ00420	568	coronin; Provisional	99.95
KOG0289	506	consensus mRNA splicing factor [General function p	99.95
KOG0639	705	consensus Transducin-like enhancer of split protei	99.95
KOG2055	514	consensus WD40 repeat protein [General function pr	99.95
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.95
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.95
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.95
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.95
KOG1539	910	consensus WD repeat protein [General function pred	99.95
KOG1274	933	consensus WD40 repeat protein [General function pr	99.94
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.94
KOG0641	350	consensus WD40 repeat protein [General function pr	99.94
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.94
KOG4328	498	consensus WD40 protein [Function unknown]	99.94
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.94
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.94
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.94
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.94
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.94
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.93
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.93
KOG0646	476	consensus WD40 repeat protein [General function pr	99.93
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.93
KOG2048	691	consensus WD40 repeat protein [General function pr	99.93
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.93
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.93
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.93
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.92
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.92
KOG0646	476	consensus WD40 repeat protein [General function pr	99.92
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.92
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.92
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.92
KOG1274	933	consensus WD40 repeat protein [General function pr	99.92
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.92
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.92
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.91
KOG4227	609	consensus WD40 repeat protein [General function pr	99.91
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.91
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.91
KOG2055	514	consensus WD40 repeat protein [General function pr	99.91
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.9
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.9
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.9
KOG0639	705	consensus Transducin-like enhancer of split protei	99.9
KOG0267	825	consensus Microtubule severing protein katanin p80	99.9
KOG0267	825	consensus Microtubule severing protein katanin p80	99.9
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.9
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.89
KOG2048	691	consensus WD40 repeat protein [General function pr	99.89
KOG1334	559	consensus WD40 repeat protein [General function pr	99.89
KOG2096	420	consensus WD40 repeat protein [General function pr	99.88
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.88
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.88
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.88
KOG1188	376	consensus WD40 repeat protein [General function pr	99.87
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.87
KOG4328	498	consensus WD40 protein [Function unknown]	99.87
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.87
KOG1310	758	consensus WD40 repeat protein [General function pr	99.87
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.87
KOG1273	405	consensus WD40 repeat protein [General function pr	99.87
KOG1963	792	consensus WD40 repeat protein [General function pr	99.86
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.86
PRK11028	330	6-phosphogluconolactonase; Provisional	99.85
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.85
COG2319	466	FOG: WD40 repeat [General function prediction only	99.85
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.85
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.85
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.84
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.84
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.84
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.83
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.83
COG2319	466	FOG: WD40 repeat [General function prediction only	99.83
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.83
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.82
PRK01742	429	tolB translocation protein TolB; Provisional	99.82
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.82
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.81
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.81
KOG1963	792	consensus WD40 repeat protein [General function pr	99.8
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.8
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.8
PRK11028	330	6-phosphogluconolactonase; Provisional	99.79
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.79
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.78
KOG1188	376	consensus WD40 repeat protein [General function pr	99.78
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.78
KOG0649	325	consensus WD40 repeat protein [General function pr	99.78
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.78
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.78
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.77
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.77
KOG4227	609	consensus WD40 repeat protein [General function pr	99.76
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.76
PRK03629	429	tolB translocation protein TolB; Provisional	99.76
PRK01742	429	tolB translocation protein TolB; Provisional	99.76
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.75
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.75
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.74
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.74
KOG0649	325	consensus WD40 repeat protein [General function pr	99.73
KOG2139	445	consensus WD40 repeat protein [General function pr	99.73
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.73
PRK02889	427	tolB translocation protein TolB; Provisional	99.72
KOG2321	703	consensus WD40 repeat protein [General function pr	99.72
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.71
PRK05137	435	tolB translocation protein TolB; Provisional	99.71
PRK03629	429	tolB translocation protein TolB; Provisional	99.71
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.71
PRK04922	433	tolB translocation protein TolB; Provisional	99.71
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.71
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.7
PRK05137	435	tolB translocation protein TolB; Provisional	99.7
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.69
PRK04922	433	tolB translocation protein TolB; Provisional	99.69
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.68
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.67
PRK02889	427	tolB translocation protein TolB; Provisional	99.67
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.66
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.66
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.65
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.65
KOG2139	445	consensus WD40 repeat protein [General function pr	99.64
KOG1310	758	consensus WD40 repeat protein [General function pr	99.64
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.64
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	99.63
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.63
KOG2315	566	consensus Predicted translation initiation factor	99.62
KOG2314	698	consensus Translation initiation factor 3, subunit	99.61
PRK04792	448	tolB translocation protein TolB; Provisional	99.61
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.61
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.6
KOG1334	559	consensus WD40 repeat protein [General function pr	99.6
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.6
PRK00178	430	tolB translocation protein TolB; Provisional	99.59
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.59
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.58
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.57
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.57
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.57
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.57
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.56
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.56
PRK00178	430	tolB translocation protein TolB; Provisional	99.56
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.55
PRK04792	448	tolB translocation protein TolB; Provisional	99.54
KOG2321	703	consensus WD40 repeat protein [General function pr	99.53
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.52
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.52
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.49
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.49
PRK01029	428	tolB translocation protein TolB; Provisional	99.47
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.47
PRK01029	428	tolB translocation protein TolB; Provisional	99.46
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.43
COG4946	668	Uncharacterized protein related to the periplasmic	99.41
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.41
KOG4547	541	consensus WD40 repeat-containing protein [General	99.4
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.37
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.37
KOG4547	541	consensus WD40 repeat-containing protein [General	99.36
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.36
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.34
PRK04043	419	tolB translocation protein TolB; Provisional	99.34
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.34
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.33
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.32
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.32
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.3
KOG2659	228	consensus LisH motif-containing protein [Cytoskele	99.28
PRK04043	419	tolB translocation protein TolB; Provisional	99.27
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.26
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.25
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.25
KOG2315	566	consensus Predicted translation initiation factor	99.23
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.22
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.22
KOG2314	698	consensus Translation initiation factor 3, subunit	99.21
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.21
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.2
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.19
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.16
COG4946	668	Uncharacterized protein related to the periplasmic	99.16
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.12
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.11
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.1
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.1
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.06
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.03
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.03
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.01
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.01
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.0
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.99
KOG2695	425	consensus WD40 repeat protein [General function pr	98.93
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.91
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.9
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.89
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.89
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.86
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.86
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.85
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.85
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.84
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.82
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.8
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.77
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.75
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.75
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.73
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.72
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.69
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.67
KOG2695	425	consensus WD40 repeat protein [General function pr	98.67
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.66
KOG3621	726	consensus WD40 repeat-containing protein [General	98.64
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.63
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.6
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.58
PF08513	27	LisH: LisH; InterPro: IPR013720 The LisH motif is	98.57
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.57
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.55
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.55
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.5
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.5
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.5
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.48
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.47
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.47
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.43
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.41
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.39
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.38
PRK02888	635	nitrous-oxide reductase; Validated	98.38
PRK02888	635	nitrous-oxide reductase; Validated	98.36
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.35
KOG0396	389	consensus Uncharacterized conserved protein [Funct	98.31
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.31
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.31
COG3391	381	Uncharacterized conserved protein [Function unknow	98.29
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.29
smart00667	34	LisH Lissencephaly type-1-like homology motif. Alp	98.28
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.27
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.27
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.25
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.24
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.24
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.19
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.19
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.17
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.16
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.15
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.09
smart00668	58	CTLH C-terminal to LisH motif. Alpha-helical motif	98.07
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.01
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	98.01
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.01
PF10607	145	CLTH: CTLH/CRA C-terminal to LisH motif domain; In	98.0
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.98
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.97
COG3391	381	Uncharacterized conserved protein [Function unknow	97.97
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.93
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.91
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.89
KOG3621	726	consensus WD40 repeat-containing protein [General	97.85
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.83
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.82
PHA02713	557	hypothetical protein; Provisional	97.82
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.81
PRK13616	591	lipoprotein LpqB; Provisional	97.81
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.81
PHA02713	557	hypothetical protein; Provisional	97.81
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.79
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.78
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.71
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.71
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.68
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.67
PRK13616	591	lipoprotein LpqB; Provisional	97.65
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.63
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.61
KOG2444	238	consensus WD40 repeat protein [General function pr	97.58
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.54
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.5
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.47
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.46
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.45
KOG2395	644	consensus Protein involved in vacuole import and d	97.39
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.38
PRK10115	686	protease 2; Provisional	97.33
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.32
KOG2395	644	consensus Protein involved in vacuole import and d	97.27
PHA03098	534	kelch-like protein; Provisional	97.27
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.18
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.17
PRK13684	334	Ycf48-like protein; Provisional	97.09
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.08
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.04
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.02
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.99
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.96
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.95
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.94
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	96.94
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.88
PRK10115	686	protease 2; Provisional	96.85
PHA02790	480	Kelch-like protein; Provisional	96.81
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.78
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.74
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.73
PHA03098	534	kelch-like protein; Provisional	96.61
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.59
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.59
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	96.56
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.52
KOG2444	238	consensus WD40 repeat protein [General function pr	96.48
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.3
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.09
PHA02790	480	Kelch-like protein; Provisional	96.04
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.02
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.96
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.85
COG5276	370	Uncharacterized conserved protein [Function unknow	95.83
KOG2377	657	consensus Uncharacterized conserved protein [Funct	95.83
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	95.8
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.67
KOG2247	615	consensus WD40 repeat-containing protein [General	95.64
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.57
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.5
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.46
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.3
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.2
COG5167	776	VID27 Protein involved in vacuole import and degra	95.19
COG5167	776	VID27 Protein involved in vacuole import and degra	95.1
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	95.01
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	94.92
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	94.92
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	94.87
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	94.84
PF14727	418	PHTB1_N: PTHB1 N-terminus	94.58
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.53
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.46
KOG2377	657	consensus Uncharacterized conserved protein [Funct	94.33
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	94.23
PLN02153	341	epithiospecifier protein	94.08
COG5276	370	Uncharacterized conserved protein [Function unknow	94.0
PLN02193	470	nitrile-specifier protein	93.99
PRK13684	334	Ycf48-like protein; Provisional	93.95
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	93.94
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	93.87
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	93.82
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	93.79
KOG2247	615	consensus WD40 repeat-containing protein [General	93.73
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	93.72
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	93.61
PLN00033	398	photosystem II stability/assembly factor; Provisio	93.41
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	93.4
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.35
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	93.31
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	93.2
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	93.16
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	93.15
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	92.7
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	92.69
PF09398	81	FOP_dimer: FOP N terminal dimerisation domain; Int	92.63
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	92.55
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	92.36
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	91.79
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	91.76
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	91.47
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	91.4
KOG3616	1636	consensus Selective LIM binding factor [Transcript	91.28
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	91.27
PF13449	326	Phytase-like: Esterase-like activity of phytase	91.04
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	90.98
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	90.77
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	90.63
COG3877	122	Uncharacterized protein conserved in bacteria [Fun	90.58
PF09862	113	DUF2089: Protein of unknown function (DUF2089); In	90.48
PLN02153	341	epithiospecifier protein	90.42
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	90.21
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	89.9
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	89.72
PLN02193	470	nitrile-specifier protein	89.3
PLN00033	398	photosystem II stability/assembly factor; Provisio	89.18
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	88.98
KOG2006	1023	consensus WD40 repeat protein [General function pr	88.94
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	88.68
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	88.68
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	88.4
KOG1896	1366	consensus mRNA cleavage and polyadenylation factor	88.35
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	88.31
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	88.08
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	87.64
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	87.57
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	87.45
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	87.1
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	86.59

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.7e-86  Score=575.88  Aligned_cols=511  Identities=50%  Similarity=0.828  Sum_probs=478.6

Q ss_pred             CCCCccc-cCCCCCCchHHHHHHHHHHHhhcChHHHHHHHhhhcCeeecChhHHHHHHHHHcCChHHHHHHhhcccCCCh
Q 042434            1 MENSSTM-IGPRGLIKKYEFVRVVVQCLYSLGYQKSASCLESESGVSYKSKGFERLEVQILNGDWDGCIDTLIAITDLND   79 (517)
Q Consensus         1 ~~~~~~~-~~~~~~~~~~~~~~li~q~L~~~g~~~s~~~l~~Esg~~~~~~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~   79 (517)
                      |.|+++| +++|+.+.+-|++|+++|+|...||.+|+.+||.|+|+.+.+...+.|.+.++.|+|++++..+..+.+.++
T Consensus         1 ~~ng~~~~l~~k~likk~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~~~de   80 (519)
T KOG0293|consen    1 YQNGSNEILGSKGLIKKGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRISFEDE   80 (519)
T ss_pred             CCCcchhhhhhhceeccchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhccCcch
Confidence            6777777 899999999999999999999999999999999999999999989999999999999999999999988888


Q ss_pred             hhhcccchhhhhhhhhHhhhcCChhHHHHHHHhhcccCCCChhHHhhhhhcccccccccccc-CCcchhhhHHHHHHHHH
Q 042434           80 ERRASVLFPVFKQCFLEYLNRGDDSLALNVLRKRVSSLQMSKDTIHNLASSMLCLEGMNLGK-IDEGVVLELRKRLLVEL  158 (517)
Q Consensus        80 ~~~~~~~~~~~~~~~~el~~~~~~~~a~~~lr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~r~~l~~~~  158 (517)
                      ...+.+.|++.+|+|+|++..|....|+..||+.+.++.+..+++++|+..+..+.+..... .........|..++.++
T Consensus        81 ~~~~ea~fLv~kQ~fLEf~k~~~is~al~~l~~~~~~lr~~~kk~~el~~sll~sn~~~~ne~~~~~~~~n~R~~ll~el  160 (519)
T KOG0293|consen   81 RNRKEAMFLVNKQIFLEFLKTGSISHALPVLRNPVLYLRKNKKKFHELASSLLVSNDQFSNEENTTAQLNNERDKLLDEL  160 (519)
T ss_pred             hhhHHHHHHHHHHHHHHHHhhccHhhhhHhhhcchhhhhhhHHHHHHHHHHHhccccccccccchhhhhchhHHHHHHHH
Confidence            88889999999999999999999999999999999999999999999998888763322222 22223456899999999


Q ss_pred             HHhCCCCCCCCcchHHHHHHHHHHhccccccCCCCCccccccCCCcccccCCCcccEEEeccccCcEEEEEECCCCCEEE
Q 042434          159 ERLLPPPEVVPERRLEHLVETAVTSQIDSCQYHNSSVAISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLA  238 (517)
Q Consensus       159 ~~~~~~~~~~~~~rl~~l~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~  238 (517)
                      ++.+||+.++|+.||++|++|+...|..+|.||+.-..++++.|+.|...++|.+..+.+..|+++|+-+.||++|+|||
T Consensus       161 skyi~p~illP~rRLehLl~qAv~~Q~d~cvyhnsldsvsll~Dh~c~~~qip~qt~qil~~htdEVWfl~FS~nGkyLA  240 (519)
T KOG0293|consen  161 SKYIPPNILLPKRRLEHLLEQAVKYQRDSCVYHNSLDSVSLLSDHFCGRLQIPSQTWQILQDHTDEVWFLQFSHNGKYLA  240 (519)
T ss_pred             HhhCCHhhcCChHHHHHHHHHHHHHHHhHhHHhcccchhhhhhhcccCcccCCchhhhhHhhCCCcEEEEEEcCCCeeEe
Confidence            99999999999999999999999999999999998889999999999999999999999999999999999999999999


Q ss_pred             EeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeC-CCCCceEEEEE
Q 042434          239 SSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFG-DHGFIVSSCAW  317 (517)
Q Consensus       239 t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~i~~  317 (517)
                      +++.|.+..+|.+.....++..+++.+|..+|..+.||||.++|++|+.|..+.+||+.+|.+...+. ++...+.+++|
T Consensus       241 saSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W  320 (519)
T KOG0293|consen  241 SASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAW  320 (519)
T ss_pred             eccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEE
Confidence            99999999999998888888999999999999999999999999999999999999999999988875 34688999999


Q ss_pred             eCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEeeccCCCe
Q 042434          318 FPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVISEEHPI  396 (517)
Q Consensus       318 ~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i  396 (517)
                      .|||..+++|+.|++  +..|+.+++....|.+-....|.++++++||+++++.+.|..|++|+..+.. ........++
T Consensus       321 ~pDg~~~V~Gs~dr~--i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~i  398 (519)
T KOG0293|consen  321 CPDGFRFVTGSPDRT--IIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPI  398 (519)
T ss_pred             ccCCceeEecCCCCc--EEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCce
Confidence            999999999999999  9999999999999999888899999999999999999999999999998877 4477888999


Q ss_pred             eEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEE
Q 042434          397 TSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEI  476 (517)
Q Consensus       397 ~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~  476 (517)
                      +++++|.+++++++.-.+..+.+||+... ..+.++.||..+.+.|++||...+..++++||+|+.|+||+..+|+++.+
T Consensus       399 ts~~iS~d~k~~LvnL~~qei~LWDl~e~-~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~  477 (519)
T KOG0293|consen  399 TSFSISKDGKLALVNLQDQEIHLWDLEEN-KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAV  477 (519)
T ss_pred             eEEEEcCCCcEEEEEcccCeeEEeecchh-hHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEe
Confidence            99999999999999999999999999854 88999999999999999999988999999999999999999999999999


Q ss_pred             ecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCC
Q 042434          477 LSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQS  514 (517)
Q Consensus       477 ~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~  514 (517)
                      +.||...|++|+|+|..+.++||+|+||+||||.+...
T Consensus       478 LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  478 LSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN  515 (519)
T ss_pred             ecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence            99999999999999999999999999999999998743

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=4.1e-69  Score=454.12  Aligned_cols=482  Identities=21%  Similarity=0.323  Sum_probs=399.8

Q ss_pred             CchHHHHHHHHHHHhhcChHHHHHHHhhhcCeeecC-hhHHHHHHHHHcCChHHHHHHhhcccCCChhhhcccchhhhhh
Q 042434           14 IKKYEFVRVVVQCLYSLGYQKSASCLESESGVSYKS-KGFERLEVQILNGDWDGCIDTLIAITDLNDERRASVLFPVFKQ   92 (517)
Q Consensus        14 ~~~~~~~~li~q~L~~~g~~~s~~~l~~Esg~~~~~-~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~   92 (517)
                      +...+++|||+|||+|++++.|+++||+|.++++|+ ++++.|.+.|.+|+||.++..++++++++     +.+..+|||
T Consensus         5 iessdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsLKLP~-----kkL~dLYEq   79 (508)
T KOG0275|consen    5 IESSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSLKLPD-----KKLIDLYEQ   79 (508)
T ss_pred             eecchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhccCch-----hHHHHHHHH
Confidence            556799999999999999999999999999999999 89999999999999999999999998865     558889999


Q ss_pred             hhhHhhhcCChhHHHHHHHhhc--ccC-CCChhHHhhhhhccccccccccccCCcchhhhHHHHHHHHHHHhCCCCCCCC
Q 042434           93 CFLEYLNRGDDSLALNVLRKRV--SSL-QMSKDTIHNLASSMLCLEGMNLGKIDEGVVLELRKRLLVELERLLPPPEVVP  169 (517)
Q Consensus        93 ~~~el~~~~~~~~a~~~lr~~~--~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~  169 (517)
                      ..+||+|.+|...|+.+||+.-  ..+ +.+++|+.+|.+++..+.-.+..+......++.|..+.+.+.   .+...+|
T Consensus        80 ivlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~dssKEkrRa~IAQ~ls---~EV~VVp  156 (508)
T KOG0275|consen   80 IVLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYGDSSKEKRRAVIAQALS---GEVHVVP  156 (508)
T ss_pred             HHHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcCcchHHHHHHHHHHHhc---CceEEcC
Confidence            9999999999999999999872  223 338899999999999863333333333333334444433333   4557799


Q ss_pred             cchHHHHHHHHHHhccccccCCCCCccccccCCCcccc----cCCCcccEEEec-cccCcEEEEEECCCCCEEEEeeCCC
Q 042434          170 ERRLEHLVETAVTSQIDSCQYHNSSVAISLYEDHCCGR----DQIPTETVQILT-EHKNEVWFVQFSNNGEYLASSSSDC  244 (517)
Q Consensus       170 ~~rl~~l~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~-~h~~~v~~~~~s~~~~~l~t~~~dg  244 (517)
                      |.||..|+.|+++||..+...+|+. .+.++.+.....    +..|....+.++ |.++.+-|..|||||+||++|+.||
T Consensus       157 pSRLlaLlGQaLKWQqHQGLLPPGt-~iDLFRGkAA~K~~~Ee~~Pt~l~r~IKFg~KSh~EcA~FSPDgqyLvsgSvDG  235 (508)
T KOG0275|consen  157 PSRLLALLGQALKWQQHQGLLPPGT-TIDLFRGKAAMKDQEEERYPTQLARSIKFGQKSHVECARFSPDGQYLVSGSVDG  235 (508)
T ss_pred             hHHHHHHHHHHhhhHhhcCCCCCCc-eeeeccchhhhhhhHhhhchHHhhhheecccccchhheeeCCCCceEeeccccc
Confidence            9999999999999999998887655 566666654433    345666666554 5778899999999999999999999


Q ss_pred             cEEEEEecCCCe-----eeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeC-CCCCceEEEEEe
Q 042434          245 SAIIWKVLEDSK-----LTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFG-DHGFIVSSCAWF  318 (517)
Q Consensus       245 ~i~iw~~~~~~~-----~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~  318 (517)
                      .|.||+..+++-     ++....+..+..+|.|++|+.|...+|+|+.||.|++|.+.+|.|++.|. .|...|+|+.|+
T Consensus       236 FiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FS  315 (508)
T KOG0275|consen  236 FIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFS  315 (508)
T ss_pred             eeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEc
Confidence            999999976632     23334567789999999999999999999999999999999999999997 899999999999


Q ss_pred             CCCCeEEEeeCCCceeEEEEeCC-CCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce----EEeeccC
Q 042434          319 PDSKRLVCGSSDTEKGIFMCDCD-GNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA----ERVISEE  393 (517)
Q Consensus       319 ~~~~~l~~~~~d~~v~i~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~  393 (517)
                      .|+..+++++.|.+  +.+..+. |+.++.++++. +.|+...|+++|..+++++.||+|++|+..+..    .......
T Consensus       316 rD~SqiLS~sfD~t--vRiHGlKSGK~LKEfrGHs-Syvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d  392 (508)
T KOG0275|consen  316 RDNSQILSASFDQT--VRIHGLKSGKCLKEFRGHS-SYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTD  392 (508)
T ss_pred             cCcchhhcccccce--EEEeccccchhHHHhcCcc-ccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCc
Confidence            99999999999999  5555554 56667777665 589999999999999999999999999998876    2233455


Q ss_pred             CCeeEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCccceEEeC-cccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCC
Q 042434          394 HPITSLSVSV-DCKNFIVNLNSQEIHMWDVAGKWEKPFKYTG-HSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS  471 (517)
Q Consensus       394 ~~i~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  471 (517)
                      .+|.++..-| +...++++...+++++.++.+.  .++.+.. ...+...+ ++..+|.|.++++.++|+.++.|.+.+|
T Consensus       393 ~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ--vVrsfsSGkREgGdFi-~~~lSpkGewiYcigED~vlYCF~~~sG  469 (508)
T KOG0275|consen  393 YPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ--VVRSFSSGKREGGDFI-NAILSPKGEWIYCIGEDGVLYCFSVLSG  469 (508)
T ss_pred             ccceeEEEcCCCCceEEEEcCCCeEEEEeccce--EEeeeccCCccCCceE-EEEecCCCcEEEEEccCcEEEEEEeecC
Confidence            6788888777 5678999999999999999774  5555543 33333334 4445999999999999999999999999


Q ss_pred             ceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCC
Q 042434          472 KPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGP  511 (517)
Q Consensus       472 ~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~  511 (517)
                      ++-.++..|...|..++-+|.. +++|+-+.||.+++|..
T Consensus       470 ~LE~tl~VhEkdvIGl~HHPHq-NllAsYsEDgllKLWkp  508 (508)
T KOG0275|consen  470 KLERTLPVHEKDVIGLTHHPHQ-NLLASYSEDGLLKLWKP  508 (508)
T ss_pred             ceeeeeecccccccccccCccc-chhhhhcccchhhhcCC
Confidence            9999999999999999999998 79999999999999974

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3e-51  Score=353.15  Aligned_cols=300  Identities=24%  Similarity=0.370  Sum_probs=267.1

Q ss_pred             cccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEE
Q 042434          206 GRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTC  285 (517)
Q Consensus       206 ~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~  285 (517)
                      ..-+....+...+.||.++|.|++|+|+|..||+|+.|.++++||+.+.   .+..+.++|...|.|++|+|||+.||+|
T Consensus        99 frvrpvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te---Tp~~t~KgH~~WVlcvawsPDgk~iASG  175 (480)
T KOG0271|consen   99 FRVRPVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE---TPLFTCKGHKNWVLCVAWSPDGKKIASG  175 (480)
T ss_pred             hcccccceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCC---CcceeecCCccEEEEEEECCCcchhhcc
Confidence            3445556788899999999999999999999999999999999999766   5668999999999999999999999999


Q ss_pred             eCCCeEEEEECCCCcEE-EEeCCCCCceEEEEEeC-----CCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEE
Q 042434          286 GNAEVLKLWDVETGICK-HTFGDHGFIVSSCAWFP-----DSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDL  359 (517)
Q Consensus       286 ~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~i~~~~-----~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~  359 (517)
                      +.||+|++||.++|+++ +.+.+|...|++++|.|     ..++|++++.||.  +.+||............|..+|+|+
T Consensus       176 ~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~--vrIWd~~~~~~~~~lsgHT~~VTCv  253 (480)
T KOG0271|consen  176 SKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGS--VRIWDTKLGTCVRTLSGHTASVTCV  253 (480)
T ss_pred             ccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCC--EEEEEccCceEEEEeccCccceEEE
Confidence            99999999999998765 57889999999999976     5779999999999  8889988766666666666799999


Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEc-----------CCCC--------------------
Q 042434          360 AVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVS-----------VDCK--------------------  406 (517)
Q Consensus       360 ~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s-----------~~~~--------------------  406 (517)
                      .|-.+| ++++|+.|++|++|+...+.  ....+|.+.|+.++.+           |.++                    
T Consensus       254 rwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~  332 (480)
T KOG0271|consen  254 RWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVL  332 (480)
T ss_pred             EEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhh
Confidence            998655 89999999999999998877  6777888999988877           2233                    


Q ss_pred             -----EEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCC
Q 042434          407 -----NFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHS  481 (517)
Q Consensus       407 -----~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~  481 (517)
                           .+++|+.|.++.+|+.....+++.+..+|..-   +..+.||||++++|+++.|..|++||.++|+.+.+|.||-
T Consensus       333 ~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~l---Vn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv  409 (480)
T KOG0271|consen  333 KDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQAL---VNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHV  409 (480)
T ss_pred             ccCcceeEEecCCceEEEecccccccchhhhhchhhh---eeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhcc
Confidence                 49999999999999987776788888899876   5566679999999999999999999999999999999999


Q ss_pred             CCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434          482 MTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS  515 (517)
Q Consensus       482 ~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~  515 (517)
                      +.|+.++|+.|. ++|++||.|.++++|++++.+
T Consensus       410 ~~VYqvawsaDs-RLlVS~SkDsTLKvw~V~tkK  442 (480)
T KOG0271|consen  410 AAVYQVAWSADS-RLLVSGSKDSTLKVWDVRTKK  442 (480)
T ss_pred             ceeEEEEeccCc-cEEEEcCCCceEEEEEeeeee
Confidence            999999999998 799999999999999998765

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-47  Score=331.19  Aligned_cols=318  Identities=24%  Similarity=0.390  Sum_probs=272.2

Q ss_pred             HhccccccCCCCCc-cccccCCCcc-cccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeE
Q 042434          182 TSQIDSCQYHNSSV-AISLYEDHCC-GRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTL  259 (517)
Q Consensus       182 ~~q~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~  259 (517)
                      ...+.+..|.|... .++.+.|... .|+.....+..+.++|..-|.|++|+|||+.||+|+.||+|++||..+++.  .
T Consensus       115 ~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~--~  192 (480)
T KOG0271|consen  115 GEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQ--I  192 (480)
T ss_pred             CCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCc--c
Confidence            33445556766554 4555555554 566667778999999999999999999999999999999999999987753  4


Q ss_pred             EEEeccCCCCEEEEEECC-----CCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCcee
Q 042434          260 KHTLRSHQNPVSFVAWSP-----DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKG  334 (517)
Q Consensus       260 ~~~~~~h~~~v~~l~~s~-----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~  334 (517)
                      ...+.+|...|++++|.|     ..++||+++.||+|+|||+..+.++..+.+|+.+|+|+.|--+| ++++|+.|++  
T Consensus       193 g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~Drt--  269 (480)
T KOG0271|consen  193 GRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRT--  269 (480)
T ss_pred             cccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCce--
Confidence            578999999999999976     56899999999999999999999999999999999999997544 8999999999  


Q ss_pred             EEEEeCC-CCeeEeeeCcCCCceEEEEEc-----------cCC-------------------------CEEEEEeCCCcE
Q 042434          335 IFMCDCD-GNEIKAWRGTRIPKVLDLAVT-----------PDG-------------------------ENLISVLSDKDI  377 (517)
Q Consensus       335 i~~~~~~-~~~~~~~~~~~~~~i~~~~~~-----------~~~-------------------------~~l~~~~~dg~i  377 (517)
                      |.+|+.. |...+.+.+|. ..|+.++.+           |.+                         ..+++|+.|.++
T Consensus       270 Ikvw~a~dG~~~r~lkGHa-hwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tl  348 (480)
T KOG0271|consen  270 IKVWRALDGKLCRELKGHA-HWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTL  348 (480)
T ss_pred             EEEEEccchhHHHhhcccc-hheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceE
Confidence            6777765 44445555443 578777766           223                         359999999999


Q ss_pred             EEEECCCce---EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEE
Q 042434          378 RILNLGTYA---ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFI  454 (517)
Q Consensus       378 ~i~d~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  454 (517)
                      .+|+....+   .....|..-|+.+.||||++++++++-|..|++||.+++ +....+.+|...++.+.   |+.|.++|
T Consensus       349 flW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG-k~lasfRGHv~~VYqva---wsaDsRLl  424 (480)
T KOG0271|consen  349 FLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTG-KFLASFRGHVAAVYQVA---WSADSRLL  424 (480)
T ss_pred             EEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCc-chhhhhhhccceeEEEE---eccCccEE
Confidence            999986554   566788889999999999999999999999999999998 88889999998866654   48899999


Q ss_pred             EEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeC
Q 042434          455 ASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWG  510 (517)
Q Consensus       455 ~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~  510 (517)
                      ++|+.|.++++||+++.++...++||.+.|.++.|+||| ..+++|+.|..+++|.
T Consensus       425 VS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG-~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  425 VSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDG-QRVASGGKDKVLRLWR  479 (480)
T ss_pred             EEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCC-ceeecCCCceEEEeec
Confidence            999999999999999999999999999999999999999 7999999999999995

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=4.8e-47  Score=331.41  Aligned_cols=284  Identities=23%  Similarity=0.316  Sum_probs=261.3

Q ss_pred             eccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCC--CCeEEEEeCCCeEEEEE
Q 042434          218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPD--DTKLLTCGNAEVLKLWD  295 (517)
Q Consensus       218 l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~--~~~l~s~~~dg~i~iwd  295 (517)
                      -.|-+.+|..+.||+|++.|||||.+|.++||+..+.   ....++.+|...|.++.|+|.  +..+|+|+.||++++|+
T Consensus       171 Q~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~---~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~  247 (459)
T KOG0272|consen  171 QVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQC---NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWK  247 (459)
T ss_pred             hccCCCcceeeEeecCCCeEEEeecCCceeEeecCCc---ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeec
Confidence            3467889999999999999999999999999999644   667899999999999999997  57899999999999999


Q ss_pred             CCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCC
Q 042434          296 VETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDK  375 (517)
Q Consensus       296 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  375 (517)
                      +.+..++..+.+|...|..++|+|+|++|++++.|.+  -.+||..++.......+|...|.+++|.+||..+++|+.|.
T Consensus       248 ~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~t--WRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~  325 (459)
T KOG0272|consen  248 LSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDST--WRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDS  325 (459)
T ss_pred             cCCCcchhhhhcchhhheeeeecCCCceeeecccccc--hhhcccccchhhHhhcccccccceeEecCCCceeeccCccc
Confidence            9999999999999999999999999999999999999  88899998877777777878999999999999999999999


Q ss_pred             cEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCC-CCc
Q 042434          376 DIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGL-DGT  452 (517)
Q Consensus       376 ~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~  452 (517)
                      .-+|||++++.  ...-+|..+|.+++|+|+|..+++|+.|+++++||++.. .....+.+|..-+..+   .++| .|.
T Consensus       326 ~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r-~~ly~ipAH~nlVS~V---k~~p~~g~  401 (459)
T KOG0272|consen  326 LGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR-SELYTIPAHSNLVSQV---KYSPQEGY  401 (459)
T ss_pred             hhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc-ccceecccccchhhhe---EecccCCe
Confidence            99999999998  455578889999999999999999999999999999987 6688888898864444   4466 789


Q ss_pred             EEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCC
Q 042434          453 FIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGP  511 (517)
Q Consensus       453 ~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~  511 (517)
                      +|++++.|+++++|...++.++.++.||.+.|.+++.++++ ..++|++.|.++++|..
T Consensus       402 fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~-~~i~t~s~DRT~KLW~~  459 (459)
T KOG0272|consen  402 FLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDS-QAIATSSFDRTIKLWRP  459 (459)
T ss_pred             EEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCC-ceEEEeccCceeeeccC
Confidence            99999999999999999999999999999999999999999 79999999999999963

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.5e-44  Score=319.90  Aligned_cols=298  Identities=22%  Similarity=0.383  Sum_probs=250.9

Q ss_pred             CCCcccEEEeccccCcEEEEEECCCCC-EEEEeeCCCcEEEEEecCCCe-eeE----EEE--e----ccCCCCEEEEEEC
Q 042434          209 QIPTETVQILTEHKNEVWFVQFSNNGE-YLASSSSDCSAIIWKVLEDSK-LTL----KHT--L----RSHQNPVSFVAWS  276 (517)
Q Consensus       209 ~~~~~~~~~l~~h~~~v~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~~~-~~~----~~~--~----~~h~~~v~~l~~s  276 (517)
                      .+|....+.+. |+.+|.+++|+|-.. .+++|+.|-..++|++..... ...    .+.  .    ...+..|++++|+
T Consensus       166 ~I~~~~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn  244 (524)
T KOG0273|consen  166 EIPSSKAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWN  244 (524)
T ss_pred             cccccceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEec
Confidence            46777788888 999999999999655 899999999999999964110 000    000  0    1124679999999


Q ss_pred             CCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCce
Q 042434          277 PDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKV  356 (517)
Q Consensus       277 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i  356 (517)
                      .+|..||+|+.||.+++|+. +|..+.++..|+++|.++.|+.+|.+|++++.|++  +.+||............+..+.
T Consensus       245 ~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~t--tilwd~~~g~~~q~f~~~s~~~  321 (524)
T KOG0273|consen  245 NDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGT--TILWDAHTGTVKQQFEFHSAPA  321 (524)
T ss_pred             CCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCcc--EEEEeccCceEEEeeeeccCCc
Confidence            99999999999999999996 67888899999999999999999999999999999  8999998777766666555455


Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeC
Q 042434          357 LDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTG  434 (517)
Q Consensus       357 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~  434 (517)
                      .++.|-.+ ..+++.+.|+.|+|+.+....  .....|.++|.++.|.|.+..|++++.|+++++|..... .....+.+
T Consensus       322 lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~-~~~~~l~~  399 (524)
T KOG0273|consen  322 LDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS-NSVHDLQA  399 (524)
T ss_pred             cceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC-cchhhhhh
Confidence            66777644 478899999999999887655  777889999999999999999999999999999998665 66777788


Q ss_pred             cccCceEEEeecCCCC---------CcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCc
Q 042434          435 HSQNKYVIRSCFGGLD---------GTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHT  505 (517)
Q Consensus       435 ~~~~~~~i~~~~~s~~---------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~  505 (517)
                      |....+.+.   |+|.         +..+++++.|++|++||+..|.++++|..|..+|.+++|+|+| .++|+|+.||.
T Consensus       400 Hskei~t~~---wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g-~ylAsGs~dg~  475 (524)
T KOG0273|consen  400 HSKEIYTIK---WSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNG-RYLASGSLDGC  475 (524)
T ss_pred             hccceeeEe---ecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCC-cEEEecCCCCe
Confidence            887655444   3553         4579999999999999999999999999999999999999999 79999999999


Q ss_pred             EEEeCCCCCCC
Q 042434          506 IRIWGPCQSSE  516 (517)
Q Consensus       506 v~iw~~~~~~~  516 (517)
                      |.||+.++++-
T Consensus       476 V~iws~~~~~l  486 (524)
T KOG0273|consen  476 VHIWSTKTGKL  486 (524)
T ss_pred             eEeccccchhe
Confidence            99999998763

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=2e-43  Score=294.65  Aligned_cols=290  Identities=20%  Similarity=0.358  Sum_probs=259.4

Q ss_pred             cccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeE
Q 042434          212 TETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVL  291 (517)
Q Consensus       212 ~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i  291 (517)
                      .+..++|+||.+.|+++.|++|+++++++|.||.+.|||..+..+.   +.+......|..++|+|.|+++|+|+.|...
T Consensus        45 ~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~---haipl~s~WVMtCA~sPSg~~VAcGGLdN~C  121 (343)
T KOG0286|consen   45 MRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKV---HAIPLPSSWVMTCAYSPSGNFVACGGLDNKC  121 (343)
T ss_pred             eeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccce---eEEecCceeEEEEEECCCCCeEEecCcCcee
Confidence            3455899999999999999999999999999999999999776543   4555568899999999999999999999999


Q ss_pred             EEEECCCC------cEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEcc-C
Q 042434          292 KLWDVETG------ICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTP-D  364 (517)
Q Consensus       292 ~iwd~~~~------~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~  364 (517)
                      .||++.+.      ...+.+.+|.+.+.|+.|.+ ...|++++.|.+  ..+||.+..+.......|.+.|.++.++| +
T Consensus       122 siy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~T--CalWDie~g~~~~~f~GH~gDV~slsl~p~~  198 (343)
T KOG0286|consen  122 SIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMT--CALWDIETGQQTQVFHGHTGDVMSLSLSPSD  198 (343)
T ss_pred             EEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCce--EEEEEcccceEEEEecCCcccEEEEecCCCC
Confidence            99999855      34567889999999999987 568999999999  99999987666665666678999999999 9


Q ss_pred             CCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEE
Q 042434          365 GENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVI  442 (517)
Q Consensus       365 ~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i  442 (517)
                      ++.+++|+.|+..++||++.+.  ..+..|...|+++.|.|+|.-+++|+.|++.++||++.. ..+..+. +......+
T Consensus       199 ~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD-~~~a~ys-~~~~~~gi  276 (343)
T KOG0286|consen  199 GNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRAD-QELAVYS-HDSIICGI  276 (343)
T ss_pred             CCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCC-cEEeeec-cCcccCCc
Confidence            9999999999999999999987  777889999999999999999999999999999999986 4444444 55556678


Q ss_pred             EeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeC
Q 042434          443 RSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWG  510 (517)
Q Consensus       443 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~  510 (517)
                      .++.||..|++|++|..|.++.+||.-.++.+..+.+|.+.|+++..+||| ..++|||.|.++|||.
T Consensus       277 tSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG-~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  277 TSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDG-MAVATGSWDSTLRIWA  343 (343)
T ss_pred             eeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCC-cEEEecchhHheeecC
Confidence            888899999999999999999999999999999999999999999999999 7999999999999995

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=5.3e-41  Score=278.52  Aligned_cols=292  Identities=22%  Similarity=0.300  Sum_probs=252.7

Q ss_pred             ccEEEeccccCcEEEEEECCC-CCEEEEeeCCCcEEEEEecCCCe--eeEEEEeccCCCCEEEEEECCCCCeEEEEeCCC
Q 042434          213 ETVQILTEHKNEVWFVQFSNN-GEYLASSSSDCSAIIWKVLEDSK--LTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAE  289 (517)
Q Consensus       213 ~~~~~l~~h~~~v~~~~~s~~-~~~l~t~~~dg~i~iw~~~~~~~--~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg  289 (517)
                      ....++++|++.|+.++..+. ...+++++.|.++.+|++.....  ..+.+.+.+|...|..+..++||++.++++.|+
T Consensus         6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~   85 (315)
T KOG0279|consen    6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG   85 (315)
T ss_pred             eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc
Confidence            345678999999999999885 67889999999999999965422  245788999999999999999999999999999


Q ss_pred             eEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcC-CCceEEEEEccC--CC
Q 042434          290 VLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTR-IPKVLDLAVTPD--GE  366 (517)
Q Consensus       290 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~--~~  366 (517)
                      ++++||+.+|+..+.|.+|...|.+++|++|.+.+++|+.|.+  +.+|+..+.+........ .+.|.|+.|+|+  ..
T Consensus        86 ~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkT--iklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p  163 (315)
T KOG0279|consen   86 TLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKT--IKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNP  163 (315)
T ss_pred             eEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcce--eeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCc
Confidence            9999999999999999999999999999999999999999999  999999988877766654 679999999998  67


Q ss_pred             EEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEe
Q 042434          367 NLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRS  444 (517)
Q Consensus       367 ~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~  444 (517)
                      .+++++.|+++++||+++.+  ....+|.+.++.+++||||...++|+.||.+.+||++.+ +....+.+..    .+.+
T Consensus       164 ~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~-k~lysl~a~~----~v~s  238 (315)
T KOG0279|consen  164 IIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG-KNLYSLEAFD----IVNS  238 (315)
T ss_pred             EEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCC-ceeEeccCCC----eEee
Confidence            99999999999999999988  667789999999999999999999999999999999877 4444443322    3788


Q ss_pred             ecCCCCCcEEEEecCCCcEEEEecCCCceeEEecC----C-----CCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434          445 CFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSG----H-----SMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ  513 (517)
Q Consensus       445 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----h-----~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~  513 (517)
                      ++|+|+..+|+.+.. ..|+|||+.++.++..+..    .     .....+++|+++| ..|++|-.|+.|++|.+..
T Consensus       239 l~fspnrywL~~at~-~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG-~tLf~g~td~~irv~qv~~  314 (315)
T KOG0279|consen  239 LCFSPNRYWLCAATA-TSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADG-QTLFAGYTDNVIRVWQVAK  314 (315)
T ss_pred             EEecCCceeEeeccC-CceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCC-cEEEeeecCCcEEEEEeec
Confidence            888998877776654 4599999999988877652    1     2345788999999 7899999999999998753

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=3e-43  Score=312.93  Aligned_cols=297  Identities=24%  Similarity=0.413  Sum_probs=269.8

Q ss_pred             cCCCcccEEEeccccCcEEEEEECC-CCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEe
Q 042434          208 DQIPTETVQILTEHKNEVWFVQFSN-NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCG  286 (517)
Q Consensus       208 ~~~~~~~~~~l~~h~~~v~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~  286 (517)
                      ..+|.+.+.++.||+..|+++.|.| .+.+|++|+.|+.|+||++...  ..+++++.+|..+|.+++|+++|..++++|
T Consensus       200 c~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~--~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~s  277 (503)
T KOG0282|consen  200 CYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD--RRCLRTFKGHRKPVRDASFNNCGTSFLSAS  277 (503)
T ss_pred             eeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecC--cceehhhhcchhhhhhhhccccCCeeeeee
Confidence            3568899999999999999999999 8999999999999999999753  367899999999999999999999999999


Q ss_pred             CCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCC-CeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCC
Q 042434          287 NAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDS-KRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDG  365 (517)
Q Consensus       287 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  365 (517)
                      .|+.+++||+++|+++..+ .....++|+.|+|++ +.|++|+.|+.  |..||.+...+..-..++.+.|..+.|-++|
T Consensus       278 fD~~lKlwDtETG~~~~~f-~~~~~~~cvkf~pd~~n~fl~G~sd~k--i~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g  354 (503)
T KOG0282|consen  278 FDRFLKLWDTETGQVLSRF-HLDKVPTCVKFHPDNQNIFLVGGSDKK--IRQWDIRSGKVVQEYDRHLGAILDITFVDEG  354 (503)
T ss_pred             cceeeeeeccccceEEEEE-ecCCCceeeecCCCCCcEEEEecCCCc--EEEEeccchHHHHHHHhhhhheeeeEEccCC
Confidence            9999999999999999998 456678999999998 88999999999  9999999888777777788899999999999


Q ss_pred             CEEEEEeCCCcEEEEECCCce---EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC--CccceEEeCcccCce
Q 042434          366 ENLISVLSDKDIRILNLGTYA---ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK--WEKPFKYTGHSQNKY  440 (517)
Q Consensus       366 ~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~--~~~~~~~~~~~~~~~  440 (517)
                      +++++.+.|++++||+.+...   .......+...++..+|+++++++-+.|+.|.+|.+...  ......+.+|....+
T Consensus       355 ~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGy  434 (503)
T KOG0282|consen  355 RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGY  434 (503)
T ss_pred             ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCc
Confidence            999999999999999998876   333345567889999999999999999999999997543  244567889999888


Q ss_pred             EEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeC
Q 042434          441 VIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWG  510 (517)
Q Consensus       441 ~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~  510 (517)
                      .+.+-+ ||||.+|++|+.||.+.+||.++-+++..+++|.+++..+.|+|..+..+||||.||.|++|+
T Consensus       435 s~~v~f-SpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  435 SCQVDF-SPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             eeeEEE-cCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            887766 999999999999999999999999999999999999999999999989999999999999997

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=3.1e-39  Score=263.51  Aligned_cols=272  Identities=24%  Similarity=0.375  Sum_probs=235.8

Q ss_pred             CEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc--EEEEeCCCCCce
Q 042434          235 EYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI--CKHTFGDHGFIV  312 (517)
Q Consensus       235 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v  312 (517)
                      -+|+++|.|.+|++|...++   .+..++....+.|..+...||++.||+++.. .|++||+.+++  ++.+|.+|...|
T Consensus        11 viLvsA~YDhTIRfWqa~tG---~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNV   86 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTG---ICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNV   86 (311)
T ss_pred             eEEEeccCcceeeeeehhcC---eEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCce
Confidence            48999999999999999877   5667888778899999999999999998765 79999998875  588999999999


Q ss_pred             EEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce---EEe
Q 042434          313 SSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA---ERV  389 (517)
Q Consensus       313 ~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~  389 (517)
                      +++.|..+|+.+++|+.||+  +.+||++.........+. .+|+++..+|+...|++|..+|.|++||+....   ...
T Consensus        87 taVgF~~dgrWMyTgseDgt--~kIWdlR~~~~qR~~~~~-spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~li  163 (311)
T KOG0315|consen   87 TAVGFQCDGRWMYTGSEDGT--VKIWDLRSLSCQRNYQHN-SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELI  163 (311)
T ss_pred             EEEEEeecCeEEEecCCCce--EEEEeccCcccchhccCC-CCcceEEecCCcceEEeecCCCcEEEEEccCCccccccC
Confidence            99999999999999999999  788888875555544444 689999999999999999999999999998875   344


Q ss_pred             eccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC-----CccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEE
Q 042434          390 ISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK-----WEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIY  464 (517)
Q Consensus       390 ~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~-----~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~  464 (517)
                      .....++.++.+.|||.+++.+...|..++|++-+.     ..++.++..|...   +..|.+|||+++|+++|.|.+++
T Consensus       164 Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~---il~C~lSPd~k~lat~ssdktv~  240 (311)
T KOG0315|consen  164 PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGH---ILRCLLSPDVKYLATCSSDKTVK  240 (311)
T ss_pred             CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccce---EEEEEECCCCcEEEeecCCceEE
Confidence            455678999999999999999999999999998543     2344556666543   44455599999999999999999


Q ss_pred             EEecCCC-ceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCCC
Q 042434          465 IWNRRNS-KPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSEV  517 (517)
Q Consensus       465 iwd~~~~-~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~v  517 (517)
                      ||+..+. +.-..+.+|...+.+.+||.+| .+|+||+.|+.+++|++..+++|
T Consensus       241 iwn~~~~~kle~~l~gh~rWvWdc~FS~dg-~YlvTassd~~~rlW~~~~~k~v  293 (311)
T KOG0315|consen  241 IWNTDDFFKLELVLTGHQRWVWDCAFSADG-EYLVTASSDHTARLWDLSAGKEV  293 (311)
T ss_pred             EEecCCceeeEEEeecCCceEEeeeeccCc-cEEEecCCCCceeecccccCcee
Confidence            9999887 7777889999999999999999 79999999999999999999864

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.3e-40  Score=285.98  Aligned_cols=288  Identities=24%  Similarity=0.405  Sum_probs=261.2

Q ss_pred             ccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEE
Q 042434          213 ETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLK  292 (517)
Q Consensus       213 ~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~  292 (517)
                      ...+.+.+|..+|+.+-|+|+-..+++++.|++|++||..++   +....+++|.+.|.+++|+..|+++++++.|-.++
T Consensus        99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg---~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~  175 (406)
T KOG0295|consen   99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETG---ELERSLRGHTDSVFDISFDASGKYLATCSSDLSAK  175 (406)
T ss_pred             CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccch---hhhhhhhccccceeEEEEecCccEEEecCCccchh
Confidence            455667789999999999999999999999999999999776   45788999999999999999999999999999999


Q ss_pred             EEECCC-CcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC-CeeEeeeCcCCCceEEEEEccCCCEEEE
Q 042434          293 LWDVET-GICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG-NEIKAWRGTRIPKVLDLAVTPDGENLIS  370 (517)
Q Consensus       293 iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~  370 (517)
                      +||.++ .++++...+|...|.++.|-|.|.++++++.|.+  |..|+..+ .++..+.++. ..|..+..+.||..+++
T Consensus       176 LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~t--ik~We~~tg~cv~t~~~h~-ewvr~v~v~~DGti~As  252 (406)
T KOG0295|consen  176 LWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNT--IKAWECDTGYCVKTFPGHS-EWVRMVRVNQDGTIIAS  252 (406)
T ss_pred             heeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccc--eeEEecccceeEEeccCch-HhEEEEEecCCeeEEEe
Confidence            999977 5778888899999999999999999999999999  78888875 5556666655 49999999999999999


Q ss_pred             EeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCC---------------CCEEEEEeCCCeEEEEEcCCCCccceEEe
Q 042434          371 VLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVD---------------CKNFIVNLNSQEIHMWDVAGKWEKPFKYT  433 (517)
Q Consensus       371 ~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~---------------~~~l~~~~~d~~i~~~d~~~~~~~~~~~~  433 (517)
                      ++.|.++++|-+.++.  .....|.+++.+++|.|.               +.++.+++.|++|++||+.++ ....++.
T Consensus       253 ~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg-~cL~tL~  331 (406)
T KOG0295|consen  253 CSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG-MCLFTLV  331 (406)
T ss_pred             cCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC-eEEEEEe
Confidence            9999999999999885  677789999999999873               247899999999999999998 8899999


Q ss_pred             CcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCC
Q 042434          434 GHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGP  511 (517)
Q Consensus       434 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~  511 (517)
                      +|...   ++.+.++|.|+||+++.+|+++++||++++++..++..|..-|++++|+.+.+ +++||+-|.++++|..
T Consensus       332 ghdnw---Vr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p-~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  332 GHDNW---VRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAP-YVVTGSVDQTVKVWEC  405 (406)
T ss_pred             cccce---eeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCc-eEEeccccceeeeeec
Confidence            99886   66777799999999999999999999999999999999999999999999985 9999999999999974

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.7e-38  Score=261.32  Aligned_cols=288  Identities=25%  Similarity=0.384  Sum_probs=235.0

Q ss_pred             ccEEEeccccCcEEEEEECCC-CCEEEEeeCCCcEEEEEecCCCeeeEEEEe-ccCCCCEEEEEECCCCCeEEEEeCCCe
Q 042434          213 ETVQILTEHKNEVWFVQFSNN-GEYLASSSSDCSAIIWKVLEDSKLTLKHTL-RSHQNPVSFVAWSPDDTKLLTCGNAEV  290 (517)
Q Consensus       213 ~~~~~l~~h~~~v~~~~~s~~-~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~-~~h~~~v~~l~~s~~~~~l~s~~~dg~  290 (517)
                      ..++.+.+|.+.|+.++|+|- |..||+|+.|+.|++|+...+..+.....+ .+|+..|.+++|+|.|++|+++|.|.+
T Consensus         5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t   84 (312)
T KOG0645|consen    5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT   84 (312)
T ss_pred             eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence            356788999999999999997 999999999999999999755556665555 469999999999999999999999999


Q ss_pred             EEEEECCCC--cEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC---CeeEeeeCcCCCceEEEEEccCC
Q 042434          291 LKLWDVETG--ICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG---NEIKAWRGTRIPKVLDLAVTPDG  365 (517)
Q Consensus       291 i~iwd~~~~--~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~  365 (517)
                      +.||.-..+  +++.++.+|...|.|++|+++|++||++++|..  ||+|....   -........|...|..+.|+|..
T Consensus        85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKS--VWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~  162 (312)
T KOG0645|consen   85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKS--VWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE  162 (312)
T ss_pred             EEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCe--EEEEEecCCCcEEEEeeeccccccccEEEEcCCc
Confidence            999987644  688899999999999999999999999999999  88888763   22233344555689999999999


Q ss_pred             CEEEEEeCCCcEEEEECC-Cce----EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCce
Q 042434          366 ENLISVLSDKDIRILNLG-TYA----ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKY  440 (517)
Q Consensus       366 ~~l~~~~~dg~i~i~d~~-~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~  440 (517)
                      ..|++++.|.+|++|+-. ...    .....+...+-+++|++.|..|++++.|+++++|-.......     .|....+
T Consensus       163 dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~-----~~sr~~Y  237 (312)
T KOG0645|consen  163 DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLSG-----MHSRALY  237 (312)
T ss_pred             ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcch-----hcccceE
Confidence            999999999999999876 332    455567779999999999999999999999999996533111     1223333


Q ss_pred             EEEeecCCCCCcEEEEecCCCcEEEEecCCC------ceeE-EecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCC
Q 042434          441 VIRSCFGGLDGTFIASGSENSQIYIWNRRNS------KPIE-ILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPC  512 (517)
Q Consensus       441 ~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~------~~~~-~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~  512 (517)
                      .+..   .  ...|++++.|+.|++|....+      +++. .-..|...|++++|+|..+.+|++||+||.|++|.+.
T Consensus       238 ~v~W---~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  238 DVPW---D--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             eeee---c--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence            3332   2  458999999999999976542      1121 2346899999999999766899999999999999874

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=3.6e-39  Score=270.33  Aligned_cols=291  Identities=25%  Similarity=0.387  Sum_probs=249.1

Q ss_pred             ccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEE
Q 042434          213 ETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLK  292 (517)
Q Consensus       213 ~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~  292 (517)
                      .++..+.||++.|+.+.|+|+|.+||+|+.|..|.+|++....  +-...+++|.++|..+.|.+|++.|++++.|.+++
T Consensus        38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~  115 (338)
T KOG0265|consen   38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVR  115 (338)
T ss_pred             chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCCEEEEecCCceEE
Confidence            4556788999999999999999999999999999999976432  34467789999999999999999999999999999


Q ss_pred             EEECCCCcEEEEeCCCCCceEEEEEeCCCC-eEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEE
Q 042434          293 LWDVETGICKHTFGDHGFIVSSCAWFPDSK-RLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISV  371 (517)
Q Consensus       293 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  371 (517)
                      .||+++|++++.++.|..-|.++.-+.-|. .+.+++.|++  +.+||.+.+.......... .++++.|...+..+++|
T Consensus       116 ~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t--~kl~D~R~k~~~~t~~~ky-qltAv~f~d~s~qv~sg  192 (338)
T KOG0265|consen  116 GWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGT--LKLWDIRKKEAIKTFENKY-QLTAVGFKDTSDQVISG  192 (338)
T ss_pred             EEecccceeeehhccccceeeecCccccCCeEEEecCCCce--EEEEeecccchhhccccce-eEEEEEecccccceeec
Confidence            999999999999999999999998555444 5667888999  8888988654433332222 79999999999999999


Q ss_pred             eCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC---CccceEEeCcccC--ceEEEe
Q 042434          372 LSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK---WEKPFKYTGHSQN--KYVIRS  444 (517)
Q Consensus       372 ~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~---~~~~~~~~~~~~~--~~~i~~  444 (517)
                      +-|+.|++||++...  ....+|..+|+.+..+|+|.++++.+.|.++++||++-.   ...+..+.++...  ...+ .
T Consensus       193 gIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL-~  271 (338)
T KOG0265|consen  193 GIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLL-K  271 (338)
T ss_pred             cccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcc-e
Confidence            999999999998877  667789999999999999999999999999999999642   2335566665542  2233 4


Q ss_pred             ecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeC
Q 042434          445 CFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWG  510 (517)
Q Consensus       445 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~  510 (517)
                      |.|+|++.++.+|+.|..+++||......+..++||.+.|++++|+|.. .++.+++.|.+|++=+
T Consensus       272 cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e-~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  272 CSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTE-PIILSCSSDKTIYLGE  336 (338)
T ss_pred             eeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCC-cEEEEeccCceeEeec
Confidence            5669999999999999999999999989999999999999999999999 5999999999998643

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.1e-40  Score=291.69  Aligned_cols=275  Identities=21%  Similarity=0.258  Sum_probs=239.6

Q ss_pred             ccccccCCCCCc--cccccCCCcccccCCCcccEEEeccccCcEEEEEECCC--CCEEEEeeCCCcEEEEEecCCCeeeE
Q 042434          184 QIDSCQYHNSSV--AISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNN--GEYLASSSSDCSAIIWKVLEDSKLTL  259 (517)
Q Consensus       184 q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~--~~~l~t~~~dg~i~iw~~~~~~~~~~  259 (517)
                      ++..|.|..+..  +.+...+....|.......+++|.||.+.|.++.|+|.  +..+|||+.||++++|++.+.   .+
T Consensus       177 Pis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e---~~  253 (459)
T KOG0272|consen  177 PISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE---TP  253 (459)
T ss_pred             cceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC---cc
Confidence            345566665555  33344444556666667889999999999999999995  679999999999999999654   56


Q ss_pred             EEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEe
Q 042434          260 KHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCD  339 (517)
Q Consensus       260 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~  339 (517)
                      +..+.+|...|..++|+|+|++|++++.|.+-++||+.++..+....+|...|.+++|.|||..+++|+.|..  -.+||
T Consensus       254 l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~--~RvWD  331 (459)
T KOG0272|consen  254 LQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSL--GRVWD  331 (459)
T ss_pred             hhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccch--hheee
Confidence            6889999999999999999999999999999999999999988888899999999999999999999999998  77889


Q ss_pred             CCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcC-CCCEEEEEeCCCe
Q 042434          340 CDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSV-DCKNFIVNLNSQE  416 (517)
Q Consensus       340 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~  416 (517)
                      +++.....+...|..+|.+++|+|+|..+++|+.|++++|||++...  .....|..-|+.+.|+| .|.+|++++.|++
T Consensus       332 lRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t  411 (459)
T KOG0272|consen  332 LRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNT  411 (459)
T ss_pred             cccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcc
Confidence            88655555555577899999999999999999999999999999877  56667888999999999 7888999999999


Q ss_pred             EEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEe
Q 042434          417 IHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWN  467 (517)
Q Consensus       417 i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd  467 (517)
                      +++|...+. .+...+.||...   +.++.+++|+.++++++.|.++++|.
T Consensus       412 ~kiWs~~~~-~~~ksLaGHe~k---V~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  412 VKIWSTRTW-SPLKSLAGHEGK---VISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             eeeecCCCc-ccchhhcCCccc---eEEEEeccCCceEEEeccCceeeecc
Confidence            999998776 899999999987   45556699999999999999999995

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.8e-39  Score=258.77  Aligned_cols=291  Identities=24%  Similarity=0.381  Sum_probs=254.9

Q ss_pred             CCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCC
Q 042434          209 QIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNA  288 (517)
Q Consensus       209 ~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d  288 (517)
                      ..|.+....+..|.++|.++.|+-+|+|.++++.|.+|++|+...+   ..++++.+|...|..++.+.|+..+++|+.|
T Consensus         4 e~ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg---~liktYsghG~EVlD~~~s~Dnskf~s~GgD   80 (307)
T KOG0316|consen    4 ELPTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG---ALIKTYSGHGHEVLDAALSSDNSKFASCGGD   80 (307)
T ss_pred             cCcchhceeecccccceEEEEEccCCCEEEEcCCCceEEeeccccc---ceeeeecCCCceeeeccccccccccccCCCC
Confidence            4567788899999999999999999999999999999999999655   6789999999999999999999999999999


Q ss_pred             CeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCe--eEeeeCcCCCceEEEEEccCCC
Q 042434          289 EVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNE--IKAWRGTRIPKVLDLAVTPDGE  366 (517)
Q Consensus       289 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~  366 (517)
                      ..+.+||+++|+..+.+.+|.+.|..+.|+.+...+++|+.|.+  +..||.+...  ..+........|.++.++  +.
T Consensus        81 k~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s--~r~wDCRS~s~ePiQildea~D~V~Si~v~--~h  156 (307)
T KOG0316|consen   81 KAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSS--VRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EH  156 (307)
T ss_pred             ceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccce--eEEEEcccCCCCccchhhhhcCceeEEEec--cc
Confidence            99999999999999999999999999999999999999999999  6666665432  222333333467777765  56


Q ss_pred             EEEEEeCCCcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeec
Q 042434          367 NLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCF  446 (517)
Q Consensus       367 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~  446 (517)
                      .+++|+.||+++.||++.+....-...++|++++|+++++..++++-|+++++.|-.++ +....+.+|....+.+.++.
T Consensus       157 eIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tG-klL~sYkGhkn~eykldc~l  235 (307)
T KOG0316|consen  157 EIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETG-KLLKSYKGHKNMEYKLDCCL  235 (307)
T ss_pred             EEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchh-HHHHHhcccccceeeeeeee
Confidence            89999999999999999999888888999999999999999999999999999999888 88899999999999888877


Q ss_pred             CCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCC-eeEEEecCCCCcEEEEeeCCCcEEEeC
Q 042434          447 GGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMT-VNCVSWNPKRPKMLASASDDHTIRIWG  510 (517)
Q Consensus       447 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~-v~~v~~~~~~~~~l~s~~~dg~v~iw~  510 (517)
                       ......+++|++||.|++||+.....+..+..|... |.+++++|... -|+++... .+..|.
T Consensus       236 -~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~-~f~~A~~~-~~~~~~  297 (307)
T KOG0316|consen  236 -NQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMD-DFITATGH-GDLFWY  297 (307)
T ss_pred             -cccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCcc-ceeEecCC-ceecee
Confidence             566789999999999999999999999999988877 89999999985 44454433 345553

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.5e-38  Score=299.77  Aligned_cols=286  Identities=20%  Similarity=0.315  Sum_probs=240.8

Q ss_pred             cCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCC----------------------------eeeE
Q 042434          208 DQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDS----------------------------KLTL  259 (517)
Q Consensus       208 ~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~----------------------------~~~~  259 (517)
                      ...|.-+..++..-...++|+.|++|+..||.|-.|..|++|.+...+                            ....
T Consensus       364 ~~lpSic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~  443 (707)
T KOG0263|consen  364 NSLPSICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGT  443 (707)
T ss_pred             CCCCcEEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCce
Confidence            455666777787777899999999999999999999999999885210                            1123


Q ss_pred             EEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEe
Q 042434          260 KHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCD  339 (517)
Q Consensus       260 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~  339 (517)
                      ..++.+|.++|..+.|+|+.++|++++.|+++++|.+.+..++..+++|..+|+.+.|+|.|-+||+++.|++  -.+|.
T Consensus       444 ~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~t--ArLWs  521 (707)
T KOG0263|consen  444 SRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQT--ARLWS  521 (707)
T ss_pred             eEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCce--eeeee
Confidence            4568899999999999999999999999999999999999999999999999999999999999999999999  55555


Q ss_pred             CCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeE
Q 042434          340 CDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEI  417 (517)
Q Consensus       340 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i  417 (517)
                      ............|.+.|.|+.|+|+..++++|+.|.++++||..++.  ..+.+|..+|.+++|+|+|++|++|+.||.|
T Consensus       522 ~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I  601 (707)
T KOG0263|consen  522 TDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLI  601 (707)
T ss_pred             cccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcE
Confidence            55433333444455689999999999999999999999999999988  6667899999999999999999999999999


Q ss_pred             EEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCc------------------------e
Q 042434          418 HMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSK------------------------P  473 (517)
Q Consensus       418 ~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~------------------------~  473 (517)
                      .+||+.++ ..+..+.+|...   +.++.|+.+|..||+|+.|.+|++||+..-.                        +
T Consensus       602 ~iWDl~~~-~~v~~l~~Ht~t---i~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  677 (707)
T KOG0263|consen  602 KIWDLANG-SLVKQLKGHTGT---IYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLL  677 (707)
T ss_pred             EEEEcCCC-cchhhhhcccCc---eeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcce
Confidence            99999988 788888899665   4555569999999999999999999976422                        3


Q ss_pred             eEEecCCCCCeeEEEecCCCCcEEEEe
Q 042434          474 IEILSGHSMTVNCVSWNPKRPKMLASA  500 (517)
Q Consensus       474 ~~~~~~h~~~v~~v~~~~~~~~~l~s~  500 (517)
                      +.++.....+|.++.|...+ ..|+.|
T Consensus       678 lgs~~tK~tpv~~l~FtrrN-l~L~~g  703 (707)
T KOG0263|consen  678 LGSFYTKNTPVVGLHFTRRN-LLLAVG  703 (707)
T ss_pred             eeeeeecCceEEEEEEeccc-eeEEec
Confidence            44455556678888887665 445444

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.7e-37  Score=278.84  Aligned_cols=323  Identities=23%  Similarity=0.344  Sum_probs=262.1

Q ss_pred             hccccccCCCCCc--cccccCCCc-ccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeE
Q 042434          183 SQIDSCQYHNSSV--AISLYEDHC-CGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTL  259 (517)
Q Consensus       183 ~q~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~  259 (517)
                      ..+..|.+.+...  .+...+|.. ..+.-.|.+...++..|..-|+|+.|||||.++|+++.||.+.+||-.+++....
T Consensus       148 r~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~  227 (603)
T KOG0318|consen  148 RRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGE  227 (603)
T ss_pred             eeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEE
Confidence            3455677766544  455555554 4567788888899999999999999999999999999999999999877755543


Q ss_pred             EEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEE-----------------------------------
Q 042434          260 KHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHT-----------------------------------  304 (517)
Q Consensus       260 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~-----------------------------------  304 (517)
                      +..-.+|.+.|.+++|+||+..+++++.|.+++|||+.+.+++++                                   
T Consensus       228 l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~  307 (603)
T KOG0318|consen  228 LEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNP  307 (603)
T ss_pred             ecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecc
Confidence            333448999999999999999999999999999999987655533                                   


Q ss_pred             --------eCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCC------------eeEeeeC--------------
Q 042434          305 --------FGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGN------------EIKAWRG--------------  350 (517)
Q Consensus       305 --------~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~------------~~~~~~~--------------  350 (517)
                              +.+|...|+++..+|++++|++|+.||.  |..|+....            ++..+..              
T Consensus       308 ~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~--I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~  385 (603)
T KOG0318|consen  308 SDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGH--INSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDT  385 (603)
T ss_pred             cCCChhheecccccceeEEEEcCCCCEEEeeccCce--EEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCe
Confidence                    3468899999999999999999999999  777776421            1111100              


Q ss_pred             -------------------------------------------------------cCCCceEEEEEccCCCEEEEEeCCC
Q 042434          351 -------------------------------------------------------TRIPKVLDLAVTPDGENLISVLSDK  375 (517)
Q Consensus       351 -------------------------------------------------------~~~~~i~~~~~~~~~~~l~~~~~dg  375 (517)
                                                                             ...-...+++++|++..+++|+.|+
T Consensus       386 l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dg  465 (603)
T KOG0318|consen  386 LRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDG  465 (603)
T ss_pred             EEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccc
Confidence                                                                   0000234688999999999999999


Q ss_pred             cEEEEECCCce----EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCC
Q 042434          376 DIRILNLGTYA----ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDG  451 (517)
Q Consensus       376 ~i~i~d~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~  451 (517)
                      .|++|.+....    .....|..+++.++++||+.+|+++...+.+.+||+.+.......+.-|...   |.+++|+|+.
T Consensus       466 kvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtak---I~~~aWsP~n  542 (603)
T KOG0318|consen  466 KVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAK---INCVAWSPNN  542 (603)
T ss_pred             eEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeee---EEEEEeCCCc
Confidence            99999998754    4667889999999999999999999999999999998876655566666665   7788889999


Q ss_pred             cEEEEecCCCcEEEEecCCCc-eeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCC
Q 042434          452 TFIASGSENSQIYIWNRRNSK-PIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPC  512 (517)
Q Consensus       452 ~~l~~~~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~  512 (517)
                      ..+|+|+-|-.|.||+++... .+....+|...|+.+.|-.+.  .+++.|.|..|++|++.
T Consensus       543 ~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde~--tvvSsG~Da~iK~W~v~  602 (603)
T KOG0318|consen  543 KLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDES--TVVSSGQDANIKVWNVT  602 (603)
T ss_pred             eEEEeccccceEEEEEccChhhheEeccccccCceeEEEecCc--eEEeccCcceeEEeccc
Confidence            999999999999999998754 344445798889999998765  69999999999999874

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.3e-37  Score=253.99  Aligned_cols=287  Identities=17%  Similarity=0.298  Sum_probs=246.7

Q ss_pred             cccccCCCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEE
Q 042434          196 AISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAW  275 (517)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~  275 (517)
                      +.+.++..+..|....+.+.+++....+.|+.+...|+++.||+++. -.|++||+.+++. .++.++.+|+..|+++.|
T Consensus        14 vsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np-~Pv~t~e~h~kNVtaVgF   91 (311)
T KOG0315|consen   14 VSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNP-NPVATFEGHTKNVTAVGF   91 (311)
T ss_pred             EeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCC-CceeEEeccCCceEEEEE
Confidence            34555556667778889999999999999999999999999999876 5899999987765 478899999999999999


Q ss_pred             CCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCC-eeEeeeCcCCC
Q 042434          276 SPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGN-EIKAWRGTRIP  354 (517)
Q Consensus       276 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~-~~~~~~~~~~~  354 (517)
                      ..+|+++++||.||+++|||++...+.+.+ .|..+|+++..+|+...|++|..+|.  |++||+... ...........
T Consensus        92 ~~dgrWMyTgseDgt~kIWdlR~~~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~--irvWDl~~~~c~~~liPe~~~  168 (311)
T KOG0315|consen   92 QCDGRWMYTGSEDGTVKIWDLRSLSCQRNY-QHNSPVNTVVLHPNQTELISGDQSGN--IRVWDLGENSCTHELIPEDDT  168 (311)
T ss_pred             eecCeEEEecCCCceEEEEeccCcccchhc-cCCCCcceEEecCCcceEEeecCCCc--EEEEEccCCccccccCCCCCc
Confidence            999999999999999999999998877777 56799999999999999999999999  889998865 33344444445


Q ss_pred             ceEEEEEccCCCEEEEEeCCCcEEEEECCCce--------EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 042434          355 KVLDLAVTPDGENLISVLSDKDIRILNLGTYA--------ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKW  426 (517)
Q Consensus       355 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~  426 (517)
                      .|.++.+.|||.+++.+...|..++|++-+..        .....|...+..+.+||++++|++++.|.++++|+..+..
T Consensus       169 ~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~  248 (311)
T KOG0315|consen  169 SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFF  248 (311)
T ss_pred             ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCce
Confidence            89999999999999999999999999987644        2344577789999999999999999999999999998765


Q ss_pred             ccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEec
Q 042434          427 EKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWN  490 (517)
Q Consensus       427 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~  490 (517)
                      .....+.+|..-   +.-|.||.||.||++|+.|+.+++||+..++.+....+|.....+++.+
T Consensus       249 kle~~l~gh~rW---vWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  249 KLELVLTGHQRW---VWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             eeEEEeecCCce---EEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence            555666777643   4445569999999999999999999999999999999998887777754

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.7e-37  Score=266.95  Aligned_cols=288  Identities=18%  Similarity=0.279  Sum_probs=239.5

Q ss_pred             cccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeE
Q 042434          212 TETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVL  291 (517)
Q Consensus       212 ~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i  291 (517)
                      ...+..|..|+++|.+++.+|+.+++|||+.|..-.+|+..++.   ....+.+|...|+++.|+.||.+||+|+.+|.|
T Consensus        54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge---~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v  130 (399)
T KOG0296|consen   54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE---FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKV  130 (399)
T ss_pred             ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc---ceeEecCCCCceEEEEEccCceEEEecCCCccE
Confidence            34577899999999999999999999999999999999997774   567889999999999999999999999999999


Q ss_pred             EEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCC-eeEeeeCcCCCceEEEEEccCCCEEEE
Q 042434          292 KLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGN-EIKAWRGTRIPKVLDLAVTPDGENLIS  370 (517)
Q Consensus       292 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~  370 (517)
                      +||+..++.....+...-..+.-+.|+|.+..|++|+.||.  +|.|....+ ..+.+.+ +..++++=.|.|+|+.+++
T Consensus       131 ~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGs--vWmw~ip~~~~~kv~~G-h~~~ct~G~f~pdGKr~~t  207 (399)
T KOG0296|consen  131 LVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGS--VWMWQIPSQALCKVMSG-HNSPCTCGEFIPDGKRILT  207 (399)
T ss_pred             EEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCc--EEEEECCCcceeeEecC-CCCCcccccccCCCceEEE
Confidence            99999999988888767778889999999999999999999  999999874 4455555 5568999999999999999


Q ss_pred             EeCCCcEEEEECCCceEEee-c----------------------------------------------------cCCCee
Q 042434          371 VLSDKDIRILNLGTYAERVI-S----------------------------------------------------EEHPIT  397 (517)
Q Consensus       371 ~~~dg~i~i~d~~~~~~~~~-~----------------------------------------------------~~~~i~  397 (517)
                      +..||+|++||+.++..... .                                                    +...+.
T Consensus       208 gy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~e  287 (399)
T KOG0296|consen  208 GYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDE  287 (399)
T ss_pred             EecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhh
Confidence            99999999999988761111 0                                                    000111


Q ss_pred             EEEE---cCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCcee
Q 042434          398 SLSV---SVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPI  474 (517)
Q Consensus       398 ~~~~---s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  474 (517)
                      ++.+   +..=..+++|+-||+|.|||+...  ..+..-.|..++  +...+ -+ ..+|++++.+|.|+.||.++|+++
T Consensus       288 sve~~~~ss~lpL~A~G~vdG~i~iyD~a~~--~~R~~c~he~~V--~~l~w-~~-t~~l~t~c~~g~v~~wDaRtG~l~  361 (399)
T KOG0296|consen  288 SVESIPSSSKLPLAACGSVDGTIAIYDLAAS--TLRHICEHEDGV--TKLKW-LN-TDYLLTACANGKVRQWDARTGQLK  361 (399)
T ss_pred             hhhhcccccccchhhcccccceEEEEecccc--hhheeccCCCce--EEEEE-cC-cchheeeccCceEEeeeccccceE
Confidence            1222   222245788899999999999763  344444455553  33333 34 679999999999999999999999


Q ss_pred             EEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCC
Q 042434          475 EILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPC  512 (517)
Q Consensus       475 ~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~  512 (517)
                      .++.||...|.+++.+|+. ++++|+|.|++.+||++.
T Consensus       362 ~~y~GH~~~Il~f~ls~~~-~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  362 FTYTGHQMGILDFALSPQK-RLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             EEEecCchheeEEEEcCCC-cEEEEecCCCeEEEEecC
Confidence            9999999999999999999 799999999999999875

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=4.4e-37  Score=298.51  Aligned_cols=293  Identities=32%  Similarity=0.460  Sum_probs=256.2

Q ss_pred             EEEeccc-cCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEE
Q 042434          215 VQILTEH-KNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKL  293 (517)
Q Consensus       215 ~~~l~~h-~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i  293 (517)
                      ...+.+| ...|.|+.|+|+|+++++++.|+.+++|+...... .....+.+|...|.+++|+|+++++++++.|++++|
T Consensus       151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiri  229 (456)
T KOG0266|consen  151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRI  229 (456)
T ss_pred             eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCcEEEEecCCceEEE
Confidence            5556554 88999999999999999999999999999955432 355666899999999999999999999999999999


Q ss_pred             EEC-CCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEe
Q 042434          294 WDV-ETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVL  372 (517)
Q Consensus       294 wd~-~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  372 (517)
                      ||+ ..+.+++++.+|...|++++|+|+++.+++|+.|++  |++||..+.........|.+.|.+++|+++++.+++++
T Consensus       230 wd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~t--vriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s  307 (456)
T KOG0266|consen  230 WDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGT--VRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSAS  307 (456)
T ss_pred             eeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCc--EEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcC
Confidence            999 666899999999999999999999999999999999  88888886555444445556999999999999999999


Q ss_pred             CCCcEEEEECCCceE----EeeccCC--CeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeec
Q 042434          373 SDKDIRILNLGTYAE----RVISEEH--PITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCF  446 (517)
Q Consensus       373 ~dg~i~i~d~~~~~~----~~~~~~~--~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~  446 (517)
                      .|+.|++||+.++..    ....+..  +++++.|+|+++++++++.|+.+++||+... .....+.+|......+....
T Consensus       308 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~-~~~~~~~~~~~~~~~~~~~~  386 (456)
T KOG0266|consen  308 YDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG-KSVGTYTGHSNLVRCIFSPT  386 (456)
T ss_pred             CCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC-cceeeecccCCcceeEeccc
Confidence            999999999999882    2223333  5899999999999999999999999999877 77778888877655555556


Q ss_pred             CCCCCcEEEEecCCCcEEEEecCCCceeEEecCC-CCCeeEEEecCCCCcEEEEee--CCCcEEEeCCC
Q 042434          447 GGLDGTFIASGSENSQIYIWNRRNSKPIEILSGH-SMTVNCVSWNPKRPKMLASAS--DDHTIRIWGPC  512 (517)
Q Consensus       447 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~v~~~~~~~~~l~s~~--~dg~v~iw~~~  512 (517)
                      .++.+.++++|+.|+.|++||..++..+..+.+| ...+..++|+|.. .++++++  .|+.+++|...
T Consensus       387 ~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~-~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  387 LSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTE-NLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             ccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCc-CeeeecCcCCCceEEEecCC
Confidence            6889999999999999999999999999999999 8999999999998 7999998  79999999875

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.1e-38  Score=277.94  Aligned_cols=283  Identities=18%  Similarity=0.340  Sum_probs=240.1

Q ss_pred             ccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCC
Q 042434          219 TEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVET  298 (517)
Q Consensus       219 ~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~  298 (517)
                      ..-+.+|..+.|.|+|+.|++|+..|.+.+|+.   ..+.....+..|..+|+++.|++++.+++||+.+|.|++|+..-
T Consensus        93 NKvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg---~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm  169 (464)
T KOG0284|consen   93 NKVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNG---TSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM  169 (464)
T ss_pred             cccccceeeEEEcCCCceeEeecccccEEEecC---ceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch
Confidence            345668999999999999999999999999986   44455556788999999999999999999999999999999754


Q ss_pred             CcEEEEeCCC-CCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCC-eeEeeeCcCCCceEEEEEccCCCEEEEEeCCCc
Q 042434          299 GICKHTFGDH-GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGN-EIKAWRGTRIPKVLDLAVTPDGENLISVLSDKD  376 (517)
Q Consensus       299 ~~~~~~~~~~-~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  376 (517)
                      . .++.+..| ...|++++|+|+...|++++.||+  |.+||.... +...+.++. -.|.++.|+|....+++++.|..
T Consensus       170 n-nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~--ikiWdf~~~kee~vL~GHg-wdVksvdWHP~kgLiasgskDnl  245 (464)
T KOG0284|consen  170 N-NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGT--IKIWDFRMPKEERVLRGHG-WDVKSVDWHPTKGLIASGSKDNL  245 (464)
T ss_pred             h-hhHHhhHhhhhhhheeccCCCCceeEEecCCCe--EEEEeccCCchhheeccCC-CCcceeccCCccceeEEccCCce
Confidence            3 44455554 599999999999999999999999  666666533 233344444 58999999999999999999999


Q ss_pred             EEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCC-CCcE
Q 042434          377 IRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGL-DGTF  453 (517)
Q Consensus       377 i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~  453 (517)
                      |++||.+++.  .....|...|..+.|+|++++|++++.|..+++||+++. +..+.+.+|....   .++.|+| ...+
T Consensus       246 VKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m-kEl~~~r~Hkkdv---~~~~WhP~~~~l  321 (464)
T KOG0284|consen  246 VKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM-KELFTYRGHKKDV---TSLTWHPLNESL  321 (464)
T ss_pred             eEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh-HHHHHhhcchhhh---eeeccccccccc
Confidence            9999999998  556678889999999999999999999999999999965 7788888888774   4444455 5678


Q ss_pred             EEEecCCCcEEEEecCCCceeEEec-CCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434          454 IASGSENSQIYIWNRRNSKPIEILS-GHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ  513 (517)
Q Consensus       454 l~~~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~  513 (517)
                      +.+|+.||.|..|.+...+++..+. +|...|.+++|+|-| ++|++|+.|.++++|.-..
T Consensus       322 ftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlG-hil~tgsnd~t~rfw~r~r  381 (464)
T KOG0284|consen  322 FTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLG-HILATGSNDRTVRFWTRNR  381 (464)
T ss_pred             eeeccCCCceEEEeccccccccCCCcccccceeeeeccccc-eeEeecCCCcceeeeccCC
Confidence            9999999999999998667666664 799999999999999 8999999999999997643

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.7e-36  Score=283.42  Aligned_cols=322  Identities=17%  Similarity=0.294  Sum_probs=273.7

Q ss_pred             hccccccCCCCCc--cccccCCCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCC-CcEEEEEecCCCeeeE
Q 042434          183 SQIDSCQYHNSSV--AISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSD-CSAIIWKVLEDSKLTL  259 (517)
Q Consensus       183 ~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d-g~i~iw~~~~~~~~~~  259 (517)
                      .+..+|.||+...  +++...+-...+..+...+++.+.-...+|..++|+..|.+||.|+.. |.+-||++.+.   ..
T Consensus       266 ~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE---sY  342 (893)
T KOG0291|consen  266 SKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE---SY  342 (893)
T ss_pred             cceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeecc---ce
Confidence            6778899998877  444444444456666677888898888999999999999999998764 89999999755   44


Q ss_pred             EEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEe
Q 042434          260 KHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCD  339 (517)
Q Consensus       260 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~  339 (517)
                      +...++|...+++++++|||+++|+|+.||.|+|||..+|-|..+|..|+..|+.+.|+..|+.+++++-||+  |..||
T Consensus       343 VlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGt--VRAwD  420 (893)
T KOG0291|consen  343 VLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGT--VRAWD  420 (893)
T ss_pred             eeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCe--EEeee
Confidence            5667899999999999999999999999999999999999999999999999999999999999999999999  77888


Q ss_pred             CC-CCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCC-cEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCC
Q 042434          340 CD-GNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDK-DIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQ  415 (517)
Q Consensus       340 ~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~  415 (517)
                      +. ....+.+..+..-...|++..|.|..+.+|+.|. .|.+|++++++  ....+|++||.+++|+|.+..+++++.|.
T Consensus       421 lkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDk  500 (893)
T KOG0291|consen  421 LKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDK  500 (893)
T ss_pred             ecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccc
Confidence            76 4556677776666788999999999999999887 69999999999  66778999999999999999999999999


Q ss_pred             eEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecC----------------
Q 042434          416 EIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSG----------------  479 (517)
Q Consensus       416 ~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----------------  479 (517)
                      +|++||+-..+..+..+.....    +..+.++|+|+-|++++-||.|.+||...+..+.++.+                
T Consensus       501 TVRiW~if~s~~~vEtl~i~sd----vl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta  576 (893)
T KOG0291|consen  501 TVRIWDIFSSSGTVETLEIRSD----VLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITA  576 (893)
T ss_pred             eEEEEEeeccCceeeeEeeccc----eeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeeh
Confidence            9999999665445555443322    44556699999999999999999999987765544332                


Q ss_pred             ----CCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCC
Q 042434          480 ----HSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQS  514 (517)
Q Consensus       480 ----h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~  514 (517)
                          .....+.+++++|| ..+++||..+.|.||++.++
T Consensus       577 ~~sa~~K~Ftti~ySaDG-~~IlAgG~sn~iCiY~v~~~  614 (893)
T KOG0291|consen  577 ENSAKGKTFTTICYSADG-KCILAGGESNSICIYDVPEG  614 (893)
T ss_pred             hhcccCCceEEEEEcCCC-CEEEecCCcccEEEEECchh
Confidence                23578999999999 79999999999999999875

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=7.7e-36  Score=276.64  Aligned_cols=285  Identities=32%  Similarity=0.506  Sum_probs=246.0

Q ss_pred             EEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEE
Q 042434          215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLW  294 (517)
Q Consensus       215 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw  294 (517)
                      +.++.+|.++|++++|+|++++|++++.||.+++|++.++.   ....+..|...+..+.|+|+++.+++++.||.|++|
T Consensus         2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~   78 (289)
T cd00200           2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE---LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLW   78 (289)
T ss_pred             chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC---cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEE
Confidence            35677999999999999999999999999999999997553   446677899999999999999999999999999999


Q ss_pred             ECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC-CeeEeeeCcCCCceEEEEEccCCCEEEEEeC
Q 042434          295 DVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG-NEIKAWRGTRIPKVLDLAVTPDGENLISVLS  373 (517)
Q Consensus       295 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  373 (517)
                      |+.+++....+..|...+.++.|++++.++++++.++.  +.+|+... .....+. .+...+.++.|+|++.++++++.
T Consensus        79 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~  155 (289)
T cd00200          79 DLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKT--IKVWDVETGKCLTTLR-GHTDWVNSVAFSPDGTFVASSSQ  155 (289)
T ss_pred             EcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCe--EEEEECCCcEEEEEec-cCCCcEEEEEEcCcCCEEEEEcC
Confidence            99998888888889999999999999888888888998  88888874 3344444 44458999999999999988888


Q ss_pred             CCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCC
Q 042434          374 DKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDG  451 (517)
Q Consensus       374 dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~  451 (517)
                      ++.+++||+++.+  .....+...+.++.|+|+++.+++++.++.+++||++.. .....+..+...   +..+.+++++
T Consensus       156 ~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~---i~~~~~~~~~  231 (289)
T cd00200         156 DGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG-KCLGTLRGHENG---VNSVAFSPDG  231 (289)
T ss_pred             CCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC-ceecchhhcCCc---eEEEEEcCCC
Confidence            9999999998765  344456668999999999999999999999999999765 444555455443   5566668899


Q ss_pred             cEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeC
Q 042434          452 TFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWG  510 (517)
Q Consensus       452 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~  510 (517)
                      .++++++.||.|++||+.+++++..+..|...|.+++|+|++ ..+++++.||.|++|+
T Consensus       232 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iw~  289 (289)
T cd00200         232 YLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDG-KRLASGSADGTIRIWD  289 (289)
T ss_pred             cEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCC-CEEEEecCCCeEEecC
Confidence            999999889999999999999999999999999999999998 6999999999999996

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1e-35  Score=267.52  Aligned_cols=298  Identities=24%  Similarity=0.421  Sum_probs=241.4

Q ss_pred             cccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCe-----------------------------------
Q 042434          212 TETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSK-----------------------------------  256 (517)
Q Consensus       212 ~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~-----------------------------------  256 (517)
                      ......+.+|...++-..|||.|.|+|+|...|+|||||......                                   
T Consensus        49 ~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerf  128 (603)
T KOG0318|consen   49 PASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERF  128 (603)
T ss_pred             ccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccce
Confidence            445777889999999999999999999999999999998643110                                   


Q ss_pred             ---------------------------------------------------eeEEEEeccCCCCEEEEEECCCCCeEEEE
Q 042434          257 ---------------------------------------------------LTLKHTLRSHQNPVSFVAWSPDDTKLLTC  285 (517)
Q Consensus       257 ---------------------------------------------------~~~~~~~~~h~~~v~~l~~s~~~~~l~s~  285 (517)
                                                                         ++...++..|..-|.|+.|+|||++++++
T Consensus       129 g~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~  208 (603)
T KOG0318|consen  129 GHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATA  208 (603)
T ss_pred             eEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEe
Confidence                                                               33445566788899999999999999999


Q ss_pred             eCCCeEEEEECCCCcEEEEeC---CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCee-Eee-------------
Q 042434          286 GNAEVLKLWDVETGICKHTFG---DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEI-KAW-------------  348 (517)
Q Consensus       286 ~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~-~~~-------------  348 (517)
                      +.||++.+||-.+|+.+..+.   +|++.|.+++|+||+..+++++.|.+  +.+||.....+ +.+             
T Consensus       209 gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt--~KIWdVs~~slv~t~~~~~~v~dqqvG~  286 (603)
T KOG0318|consen  209 GSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKT--IKIWDVSTNSLVSTWPMGSTVEDQQVGC  286 (603)
T ss_pred             cCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCce--EEEEEeeccceEEEeecCCchhceEEEE
Confidence            999999999999999999997   89999999999999999999999999  45555432211 111             


Q ss_pred             -----------------------------eCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceEE-----------
Q 042434          349 -----------------------------RGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAER-----------  388 (517)
Q Consensus       349 -----------------------------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----------  388 (517)
                                                   ..+|...|+++..+|++++|++|+.||.|.-||..++..-           
T Consensus       287 lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI  366 (603)
T KOG0318|consen  287 LWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQI  366 (603)
T ss_pred             EEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceE
Confidence                                         1144567999999999999999999999999997543200           


Q ss_pred             ---------------------ee---------------------------------------------------ccCCCe
Q 042434          389 ---------------------VI---------------------------------------------------SEEHPI  396 (517)
Q Consensus       389 ---------------------~~---------------------------------------------------~~~~~i  396 (517)
                                           ..                                                   ......
T Consensus       367 ~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~  446 (603)
T KOG0318|consen  367 KGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYES  446 (603)
T ss_pred             EEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeecccccc
Confidence                                 00                                                   001134


Q ss_pred             eEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-ccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeE
Q 042434          397 TSLSVSVDCKNFIVNLNSQEIHMWDVAGKW-EKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIE  475 (517)
Q Consensus       397 ~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  475 (517)
                      .+++++|++..+++|+.|+.+++|.+.+.. ........|...   ++.+.+|||+.|||+|...+.+.+||+.+.+...
T Consensus       447 s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~---iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~  523 (603)
T KOG0318|consen  447 SAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAA---ITDVAYSPDGAYLAAGDASRKVVLYDVASREVKT  523 (603)
T ss_pred             ceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCC---ceEEEECCCCcEEEEeccCCcEEEEEcccCceec
Confidence            678899999999999999999999998753 223345556655   6667779999999999999999999999887632


Q ss_pred             -EecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434          476 -ILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS  515 (517)
Q Consensus       476 -~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~  515 (517)
                       .+.-|.+.|++++|+|+. .++||||.|-.|.||+++.+.
T Consensus       524 ~~w~FHtakI~~~aWsP~n-~~vATGSlDt~Viiysv~kP~  563 (603)
T KOG0318|consen  524 NRWAFHTAKINCVAWSPNN-KLVATGSLDTNVIIYSVKKPA  563 (603)
T ss_pred             ceeeeeeeeEEEEEeCCCc-eEEEeccccceEEEEEccChh
Confidence             233499999999999999 799999999999999998764

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=7.9e-37  Score=261.95  Aligned_cols=294  Identities=20%  Similarity=0.277  Sum_probs=254.4

Q ss_pred             ccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEe
Q 042434          207 RDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCG  286 (517)
Q Consensus       207 ~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~  286 (517)
                      .|-.|-+..+++.||.+-|.|+++.|...++++|+.|++++|||+.++   .+..++.+|-..|..+++|+-..|+++++
T Consensus       136 eWHapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg---~LkltltGhi~~vr~vavS~rHpYlFs~g  212 (460)
T KOG0285|consen  136 EWHAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATG---QLKLTLTGHIETVRGVAVSKRHPYLFSAG  212 (460)
T ss_pred             cccCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccC---eEEEeecchhheeeeeeecccCceEEEec
Confidence            345566788899999999999999999999999999999999999877   67789999999999999999999999999


Q ss_pred             CCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCC
Q 042434          287 NAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGE  366 (517)
Q Consensus       287 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  366 (517)
                      .|+.|+.||++..+.++.+.+|-..|.|++.+|.-..|++|+.|..  +.+||++++.......+|..+|..+.+.|-..
T Consensus       213 edk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst--~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dp  290 (460)
T KOG0285|consen  213 EDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDST--IRVWDIRTRASVHVLSGHTNPVASVMCQPTDP  290 (460)
T ss_pred             CCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcce--EEEeeecccceEEEecCCCCcceeEEeecCCC
Confidence            9999999999999999999999999999999999999999999999  88889887665555555667999999999999


Q ss_pred             EEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEe
Q 042434          367 NLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRS  444 (517)
Q Consensus       367 ~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~  444 (517)
                      .+++|+.|++|++||++.++  .....|...+.+++.+|....+++++.|. |+-|++..+ .....+.+|...   +.+
T Consensus       291 qvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g-~f~~nlsgh~~i---int  365 (460)
T KOG0285|consen  291 QVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEG-EFLQNLSGHNAI---INT  365 (460)
T ss_pred             ceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCcc-chhhccccccce---eee
Confidence            99999999999999999988  66677888999999999988888887765 899999877 555557777664   444


Q ss_pred             ecCCCCCcEEEEecCCCcEEEEecCCCceeEEec-----C---CCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCC
Q 042434          445 CFGGLDGTFIASGSENSQIYIWNRRNSKPIEILS-----G---HSMTVNCVSWNPKRPKMLASASDDHTIRIWGPC  512 (517)
Q Consensus       445 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~---h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~  512 (517)
                      +... +..++++|+++|.+.+||.++|-..+...     |   ....|.+.+|...| ..|+||..|.+|++|.-.
T Consensus       366 l~~n-sD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg-~rlit~eadKtIk~~keD  439 (460)
T KOG0285|consen  366 LSVN-SDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTG-SRLITGEADKTIKMYKED  439 (460)
T ss_pred             eeec-cCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccC-ceEEeccCCcceEEEecc
Confidence            4433 34588999999999999999986554442     1   24678999999999 789999999999999754

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=5.6e-36  Score=248.70  Aligned_cols=252  Identities=21%  Similarity=0.261  Sum_probs=214.7

Q ss_pred             CCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCC
Q 042434          210 IPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAE  289 (517)
Q Consensus       210 ~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg  289 (517)
                      .-+.+++.++||...|..+..++||++.++++.|+++++||+.++   +....|.+|...|.+++|++|++.+++|+.|.
T Consensus        51 ~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g---~~t~~f~GH~~dVlsva~s~dn~qivSGSrDk  127 (315)
T KOG0279|consen   51 KYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATG---ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDK  127 (315)
T ss_pred             ccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCC---cEEEEEEecCCceEEEEecCCCceeecCCCcc
Confidence            345678999999999999999999999999999999999999876   55678999999999999999999999999999


Q ss_pred             eEEEEECCCCcEEEEeCCC--CCceEEEEEeCC--CCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCC
Q 042434          290 VLKLWDVETGICKHTFGDH--GFIVSSCAWFPD--SKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDG  365 (517)
Q Consensus       290 ~i~iwd~~~~~~~~~~~~~--~~~v~~i~~~~~--~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  365 (517)
                      +|++|++.. .+..++..+  .+.|.|+.|+|+  ..+|++++.|++  +.+||+++.++......+.+.++.++++|||
T Consensus       128 Tiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~Dkt--vKvWnl~~~~l~~~~~gh~~~v~t~~vSpDG  204 (315)
T KOG0279|consen  128 TIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKT--VKVWNLRNCQLRTTFIGHSGYVNTVTVSPDG  204 (315)
T ss_pred             eeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCce--EEEEccCCcchhhccccccccEEEEEECCCC
Confidence            999999854 455555433  889999999998  679999999999  8899999988888877888899999999999


Q ss_pred             CEEEEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEe----Cc--ccC
Q 042434          366 ENLISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYT----GH--SQN  438 (517)
Q Consensus       366 ~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~----~~--~~~  438 (517)
                      ...++|+.||.+.+||++.++ .....+...|.+++|+|+.-.|+.+. +..|+|||+.++ ..+..+.    +.  ...
T Consensus       205 slcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~-~~v~~l~~d~~g~s~~~~  282 (315)
T KOG0279|consen  205 SLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESK-AVVEELKLDGIGPSSKAG  282 (315)
T ss_pred             CEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeecc-CCceEEEeccch-hhhhhccccccccccccC
Confidence            999999999999999999988 77888899999999999976665555 445999999876 3333322    11  112


Q ss_pred             ceEEEeecCCCCCcEEEEecCCCcEEEEecC
Q 042434          439 KYVIRSCFGGLDGTFIASGSENSQIYIWNRR  469 (517)
Q Consensus       439 ~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~  469 (517)
                      .....+++|++||..|++|-.|+.|++|.+.
T Consensus       283 ~~~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  283 DPICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             CcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence            2334456779999999999999999999875

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=8.2e-36  Score=264.66  Aligned_cols=278  Identities=22%  Similarity=0.363  Sum_probs=241.4

Q ss_pred             cCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcE
Q 042434          222 KNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGIC  301 (517)
Q Consensus       222 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~  301 (517)
                      ...|++++|+.+|..||+|+.||.++||+...    ....++..|.++|.++.|+.+|++|++++.|+++.+||..+|..
T Consensus       235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G----~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~  310 (524)
T KOG0273|consen  235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDG----NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV  310 (524)
T ss_pred             cCCcceEEecCCCCeEEEeecCcEEEEEecCc----hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE
Confidence            36899999999999999999999999999752    34577888999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEE
Q 042434          302 KHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILN  381 (517)
Q Consensus       302 ~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  381 (517)
                      ...+..|..+-..+.|-. ...|++++.|+.+.|+..+.. .+...+.+ |.+.|.++.|+|.|.+|++++.|++++||.
T Consensus       311 ~q~f~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~-~P~~t~~G-H~g~V~alk~n~tg~LLaS~SdD~TlkiWs  387 (524)
T KOG0273|consen  311 KQQFEFHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGED-RPVKTFIG-HHGEVNALKWNPTGSLLASCSDDGTLKIWS  387 (524)
T ss_pred             EEeeeeccCCccceEEec-CceEeecCCCceEEEEEecCC-Ccceeeec-ccCceEEEEECCCCceEEEecCCCeeEeee
Confidence            999988888878889974 557999999999545444433 45556666 557999999999999999999999999999


Q ss_pred             CCCce--EEeeccCCCeeEEEEcCCC---------CEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCC
Q 042434          382 LGTYA--ERVISEEHPITSLSVSVDC---------KNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLD  450 (517)
Q Consensus       382 ~~~~~--~~~~~~~~~i~~~~~s~~~---------~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  450 (517)
                      .....  .....|...|..+.|+|.|         ..+++++.|++|++||+..+ .++..+..|..+++.   +.++|+
T Consensus       388 ~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g-v~i~~f~kH~~pVys---vafS~~  463 (524)
T KOG0273|consen  388 MGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG-VPIHTLMKHQEPVYS---VAFSPN  463 (524)
T ss_pred             cCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC-ceeEeeccCCCceEE---EEecCC
Confidence            76655  5566788889999999965         45899999999999999887 788889889888554   455999


Q ss_pred             CcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCC
Q 042434          451 GTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPC  512 (517)
Q Consensus       451 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~  512 (517)
                      |+|+|+|+.||.|.+|+.++++.++.+.+ .+.|..++|+.+| ..+..+-.||.+++-|+.
T Consensus       464 g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G-~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  464 GRYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAG-DKLGACASDGSVCVLDLR  523 (524)
T ss_pred             CcEEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCC-CEEEEEecCCCceEEEec
Confidence            99999999999999999999999999985 5679999999999 788888899999998874

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.6e-35  Score=274.67  Aligned_cols=324  Identities=17%  Similarity=0.278  Sum_probs=248.8

Q ss_pred             ccccccCCCCCccccccCCCcccccCC---------CcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCC
Q 042434          184 QIDSCQYHNSSVAISLYEDHCCGRDQI---------PTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLED  254 (517)
Q Consensus       184 q~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~  254 (517)
                      .+.+..|.|+...+.+.-+....++..         |....+++.||.+.|+++.|+.|.++|++||.|.++++|.+...
T Consensus        98 ~v~~i~fSPng~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~  177 (893)
T KOG0291|consen   98 GVGAIKFSPNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGN  177 (893)
T ss_pred             ccceEEECCCCcEEEEEecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccc
Confidence            344455666655444444444444433         44556788999999999999999999999999999999999755


Q ss_pred             CeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCC-----------------------CcE-----E----
Q 042434          255 SKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVET-----------------------GIC-----K----  302 (517)
Q Consensus       255 ~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~-----------------------~~~-----~----  302 (517)
                      +. -....+.+|.++|.++-|..+...+++.+.||.+.+|....                       ++.     .    
T Consensus       178 k~-~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~  256 (893)
T KOG0291|consen  178 KN-LFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKT  256 (893)
T ss_pred             cc-cceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEE
Confidence            44 34567899999999999999999999999999999997650                       111     0    


Q ss_pred             --EEeCC------------------------------------------CCCceEEEEEeCCCCeEEEeeCC-CceeEEE
Q 042434          303 --HTFGD------------------------------------------HGFIVSSCAWFPDSKRLVCGSSD-TEKGIFM  337 (517)
Q Consensus       303 --~~~~~------------------------------------------~~~~v~~i~~~~~~~~l~~~~~d-~~v~i~~  337 (517)
                        .-+..                                          ...+|..++|+..|..++.|+.. |.+-||.
T Consensus       257 ~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVwe  336 (893)
T KOG0291|consen  257 KKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWE  336 (893)
T ss_pred             EeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEE
Confidence              00111                                          12334455555555555555543 4433333


Q ss_pred             EeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCC
Q 042434          338 CDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQ  415 (517)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~  415 (517)
                      |  ...........|...+.+++++|||+++++|+.||.|+|||..++-  ..+..|...++.+.|+..|+.+++++-||
T Consensus       337 W--qsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDG  414 (893)
T KOG0291|consen  337 W--QSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDG  414 (893)
T ss_pred             e--eccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCC
Confidence            3  3333333344566789999999999999999999999999999866  67778999999999999999999999999


Q ss_pred             eEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCC-cEEEEecCCCceeEEecCCCCCeeEEEecCCCC
Q 042434          416 EIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENS-QIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRP  494 (517)
Q Consensus       416 ~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~  494 (517)
                      +|+.||+... ..-+++.....  ....+++..|.|..+++|+.|. .|++|++++|+++..+.||.++|.+++|+|++ 
T Consensus       415 tVRAwDlkRY-rNfRTft~P~p--~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~-  490 (893)
T KOG0291|consen  415 TVRAWDLKRY-RNFRTFTSPEP--IQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDG-  490 (893)
T ss_pred             eEEeeeeccc-ceeeeecCCCc--eeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcccc-
Confidence            9999999654 44455554433  2345666688899999999886 79999999999999999999999999999999 


Q ss_pred             cEEEEeeCCCcEEEeCCCCC
Q 042434          495 KMLASASDDHTIRIWGPCQS  514 (517)
Q Consensus       495 ~~l~s~~~dg~v~iw~~~~~  514 (517)
                      ..|+|+|.|.+||+|++-..
T Consensus       491 ~~LaS~SWDkTVRiW~if~s  510 (893)
T KOG0291|consen  491 SLLASGSWDKTVRIWDIFSS  510 (893)
T ss_pred             CeEEeccccceEEEEEeecc
Confidence            79999999999999998544

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=8.4e-37  Score=249.47  Aligned_cols=289  Identities=23%  Similarity=0.332  Sum_probs=248.7

Q ss_pred             EEEeccccCcEEEEEECC---CCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeE
Q 042434          215 VQILTEHKNEVWFVQFSN---NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVL  291 (517)
Q Consensus       215 ~~~l~~h~~~v~~~~~s~---~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i  291 (517)
                      ..+..||+.+|..++|||   +|-+|++++.||.-.+-+-+++   ..+.++.+|.+.|++.....+...-|+++.|-+-
T Consensus         7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tg---dwigtfeghkgavw~~~l~~na~~aasaaadfta   83 (334)
T KOG0278|consen    7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTG---DWIGTFEGHKGAVWSATLNKNATRAASAAADFTA   83 (334)
T ss_pred             ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCC---CcEEeeeccCcceeeeecCchhhhhhhhcccchh
Confidence            346679999999999987   8999999999999887765554   6678999999999999999988889999999999


Q ss_pred             EEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEE
Q 042434          292 KLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISV  371 (517)
Q Consensus       292 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  371 (517)
                      ++||.-+|..++.| .|+.-|.+++|+.|.++|++|+.+..++|+..+....+...+.++. +.|..+.|....+.+++.
T Consensus        84 kvw~a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ght-g~Ir~v~wc~eD~~iLSS  161 (334)
T KOG0278|consen   84 KVWDAVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHT-GGIRTVLWCHEDKCILSS  161 (334)
T ss_pred             hhhhhhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCC-CcceeEEEeccCceEEee
Confidence            99999999999999 7899999999999999999999999955555554455556666555 589999999999999999


Q ss_pred             eCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCC
Q 042434          372 LSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLD  450 (517)
Q Consensus       372 ~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  450 (517)
                      +.|++|++||.+++. ...+....+++++.++++|+++.++ ..+.|.+||..+. ..+..+...    +.+.+...+|+
T Consensus       162 add~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf-~~lKs~k~P----~nV~SASL~P~  235 (334)
T KOG0278|consen  162 ADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSF-GLLKSYKMP----CNVESASLHPK  235 (334)
T ss_pred             ccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEe-cCceeEEeccccc-cceeeccCc----cccccccccCC
Confidence            999999999999998 6777888999999999999876554 4567999998765 333333322    22666677899


Q ss_pred             CcEEEEecCCCcEEEEecCCCceeEEe-cCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434          451 GTFIASGSENSQIYIWNRRNSKPIEIL-SGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS  515 (517)
Q Consensus       451 ~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~  515 (517)
                      ..++++|++|+.++.||..+|..+..+ ++|.++|.||.|+|+| .+.++||.||+|++|....++
T Consensus       236 k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdG-E~yAsGSEDGTirlWQt~~~~  300 (334)
T KOG0278|consen  236 KEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDG-ELYASGSEDGTIRLWQTTPGK  300 (334)
T ss_pred             CceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCC-ceeeccCCCceEEEEEecCCC
Confidence            999999999999999999999999886 8999999999999999 799999999999999987654

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=2.2e-35  Score=246.72  Aligned_cols=280  Identities=21%  Similarity=0.274  Sum_probs=240.6

Q ss_pred             HHhccccccCCCCCc-cccccCCCc-ccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCC---C
Q 042434          181 VTSQIDSCQYHNSSV-AISLYEDHC-CGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLED---S  255 (517)
Q Consensus       181 ~~~q~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~---~  255 (517)
                      +...+....+.++.. .++.+.|.. .+|+.++...++.+.-...-|..++|+|.|+++|.|+-|....||++.+.   .
T Consensus        54 H~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g  133 (343)
T KOG0286|consen   54 HLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEG  133 (343)
T ss_pred             cccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccc
Confidence            444555555555555 666666665 56888999999999999999999999999999999999999999999743   2


Q ss_pred             eeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeC-CCCeEEEeeCCCcee
Q 042434          256 KLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFP-DSKRLVCGSSDTEKG  334 (517)
Q Consensus       256 ~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~d~~v~  334 (517)
                      .....+.+.+|++.+.|+.|-+ ...|++++.|.++.+||+++|+.+..|.+|.+.|.+++++| +++.|++|+.|+.  
T Consensus       134 ~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~--  210 (343)
T KOG0286|consen  134 NVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKS--  210 (343)
T ss_pred             cceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccc--
Confidence            3356678999999999999987 55899999999999999999999999999999999999999 9999999999999  


Q ss_pred             EEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEeec---cCCCeeEEEEcCCCCEEEE
Q 042434          335 IFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVIS---EEHPITSLSVSVDCKNFIV  410 (517)
Q Consensus       335 i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~---~~~~i~~~~~s~~~~~l~~  410 (517)
                      .++||.+..........|.+.|+++.|.|+|.-+++|+.|++.++||++... ...+.   ...+|++++||..|++|++
T Consensus       211 aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfa  290 (343)
T KOG0286|consen  211 AKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFA  290 (343)
T ss_pred             eeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEe
Confidence            8999998655555555555799999999999999999999999999999876 33333   3457999999999999999


Q ss_pred             EeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEe
Q 042434          411 NLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWN  467 (517)
Q Consensus       411 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd  467 (517)
                      |..|.++.+||.-.+ ..+..+.+|...   +.++..+|||.-+++|+.|..++||.
T Consensus       291 gy~d~~c~vWDtlk~-e~vg~L~GHeNR---vScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  291 GYDDFTCNVWDTLKG-ERVGVLAGHENR---VSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             eecCCceeEeecccc-ceEEEeeccCCe---eEEEEECCCCcEEEecchhHheeecC
Confidence            999999999998766 777888899887   55555699999999999999999994

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.6e-35  Score=276.71  Aligned_cols=342  Identities=18%  Similarity=0.226  Sum_probs=271.5

Q ss_pred             CCcchHHHHHHHHHHhccccccCCCCCc--cccccCCCcccccCCCcccEEEeccccCcEEEEEECCCCC--EEEEeeCC
Q 042434          168 VPERRLEHLVETAVTSQIDSCQYHNSSV--AISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGE--YLASSSSD  243 (517)
Q Consensus       168 ~~~~rl~~l~~~~~~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~--~l~t~~~d  243 (517)
                      +|..++.....-.++.++....+++...  +.+..++....|+.....+.+.|+||.+.|.++.|+|+-.  .|++|..|
T Consensus        91 L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D  170 (775)
T KOG0319|consen   91 LPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATD  170 (775)
T ss_pred             cccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCC
Confidence            3344444444444455555566666554  4455555667788888889999999999999999999654  58999999


Q ss_pred             CcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEE---------------------
Q 042434          244 CSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICK---------------------  302 (517)
Q Consensus       244 g~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~---------------------  302 (517)
                      +.+++||+.+...  +..++..|.+.|++++|++|+..++++|.|..+.|||+.+.+..                     
T Consensus       171 ~~v~vwnl~~~~t--cl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~  248 (775)
T KOG0319|consen  171 GTVRVWNLNDKRT--CLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGG  248 (775)
T ss_pred             ceEEEEEcccCch--HHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCC
Confidence            9999999975543  46778889999999999999999999999999999987421100                     


Q ss_pred             --------------------------------------------------------------------------------
Q 042434          303 --------------------------------------------------------------------------------  302 (517)
Q Consensus       303 --------------------------------------------------------------------------------  302 (517)
                                                                                                      
T Consensus       249 ~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~D  328 (775)
T KOG0319|consen  249 KGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILD  328 (775)
T ss_pred             cceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhhee
Confidence                                                                                            


Q ss_pred             ------------------------------EEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC--CeeEeeeC
Q 042434          303 ------------------------------HTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG--NEIKAWRG  350 (517)
Q Consensus       303 ------------------------------~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~--~~~~~~~~  350 (517)
                                                    ..+.+|+..|.++....+|.+|++|+.|.++++|.++.+.  ........
T Consensus       329 m~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~  408 (775)
T KOG0319|consen  329 MKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQAN  408 (775)
T ss_pred             eeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhc
Confidence                                          1123477778888855677899999999995555552221  11222334


Q ss_pred             cCCCceEEEEEccCC-CEEEEEeCCCcEEEEECCCce-----------EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEE
Q 042434          351 TRIPKVLDLAVTPDG-ENLISVLSDKDIRILNLGTYA-----------ERVISEEHPITSLSVSVDCKNFIVNLNSQEIH  418 (517)
Q Consensus       351 ~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~-----------~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~  418 (517)
                      .|.+.|.+++++..+ .++++++.|+++++|++...+           .....|...|++++++|+.+.+++|+.|.+.+
T Consensus       409 gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaK  488 (775)
T KOG0319|consen  409 GHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAK  488 (775)
T ss_pred             ccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEeccccccee
Confidence            555689999997755 488999999999999998722           12335788999999999999999999999999


Q ss_pred             EEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEE
Q 042434          419 MWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLA  498 (517)
Q Consensus       419 ~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~  498 (517)
                      +|++... .....+.||..+.+   ++.|++..+.++++|.|++|+||.+.+..++.++.||...|..+.|-.++ ..|+
T Consensus       489 iW~le~~-~l~~vLsGH~RGvw---~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~-~qli  563 (775)
T KOG0319|consen  489 IWDLEQL-RLLGVLSGHTRGVW---CVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNG-KQLI  563 (775)
T ss_pred             eecccCc-eEEEEeeCCccceE---EEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCC-cEEE
Confidence            9999854 78889999998855   44558999999999999999999999999999999999999999999999 7999


Q ss_pred             EeeCCCcEEEeCCCCCCC
Q 042434          499 SASDDHTIRIWGPCQSSE  516 (517)
Q Consensus       499 s~~~dg~v~iw~~~~~~~  516 (517)
                      |++.||.+++|++++++.
T Consensus       564 S~~adGliKlWnikt~eC  581 (775)
T KOG0319|consen  564 SAGADGLIKLWNIKTNEC  581 (775)
T ss_pred             eccCCCcEEEEeccchhh
Confidence            999999999999998764

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=6.5e-34  Score=297.32  Aligned_cols=284  Identities=17%  Similarity=0.290  Sum_probs=230.9

Q ss_pred             eccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCC----Cee-eEEEEeccCCCCEEEEEECC-CCCeEEEEeCCCeE
Q 042434          218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLED----SKL-TLKHTLRSHQNPVSFVAWSP-DDTKLLTCGNAEVL  291 (517)
Q Consensus       218 l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~----~~~-~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i  291 (517)
                      +..|.+.|++++|+|+|++||+|+.|+.|+||+....    ... .....+. +...|.+++|+| ++.+|++++.||+|
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v  557 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV  557 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence            4459999999999999999999999999999997531    110 1122233 456899999987 47899999999999


Q ss_pred             EEEECCCCcEEEEeCCCCCceEEEEEeC-CCCeEEEeeCCCceeEEEEeCCC-CeeEeeeCcCCCceEEEEEc-cCCCEE
Q 042434          292 KLWDVETGICKHTFGDHGFIVSSCAWFP-DSKRLVCGSSDTEKGIFMCDCDG-NEIKAWRGTRIPKVLDLAVT-PDGENL  368 (517)
Q Consensus       292 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~-~~~~~l  368 (517)
                      ++||+.+++.+..+.+|...|++++|+| ++.+|++|+.|+.  |.+||... ..+..+..+  ..+.++.|+ +++..+
T Consensus       558 ~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~--v~iWd~~~~~~~~~~~~~--~~v~~v~~~~~~g~~l  633 (793)
T PLN00181        558 QVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGS--VKLWSINQGVSIGTIKTK--ANICCVQFPSESGRSL  633 (793)
T ss_pred             EEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCE--EEEEECCCCcEEEEEecC--CCeEEEEEeCCCCCEE
Confidence            9999999999999999999999999997 7889999999999  77788764 334444432  378899995 578999


Q ss_pred             EEEeCCCcEEEEECCCce---EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC-----CccceEEeCcccCce
Q 042434          369 ISVLSDKDIRILNLGTYA---ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK-----WEKPFKYTGHSQNKY  440 (517)
Q Consensus       369 ~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~-----~~~~~~~~~~~~~~~  440 (517)
                      ++|+.||.|++||+++..   .....|...|.++.|. ++.++++++.|+.|++||++..     ......+.+|...  
T Consensus       634 atgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~--  710 (793)
T PLN00181        634 AFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNV--  710 (793)
T ss_pred             EEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCC--
Confidence            999999999999998754   3455688899999997 7789999999999999999742     2345667777654  


Q ss_pred             EEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEe-------------cCCCCCeeEEEecCCCCcEEEEeeCCCcEE
Q 042434          441 VIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEIL-------------SGHSMTVNCVSWNPKRPKMLASASDDHTIR  507 (517)
Q Consensus       441 ~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------------~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~  507 (517)
                       +.++.+++++.+|++|+.||.|++|+.....++..+             ..|...|.+++|+|++ ..|++|+.||.|+
T Consensus       711 -i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~-~~lva~~~dG~I~  788 (793)
T PLN00181        711 -KNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQS-STLVAANSTGNIK  788 (793)
T ss_pred             -eeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCC-CeEEEecCCCcEE
Confidence             445556899999999999999999998766544322             2345679999999999 7999999999999


Q ss_pred             EeCC
Q 042434          508 IWGP  511 (517)
Q Consensus       508 iw~~  511 (517)
                      ||++
T Consensus       789 i~~~  792 (793)
T PLN00181        789 ILEM  792 (793)
T ss_pred             EEec
Confidence            9986

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=1e-34  Score=239.57  Aligned_cols=285  Identities=20%  Similarity=0.234  Sum_probs=232.9

Q ss_pred             EeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEEC
Q 042434          217 ILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDV  296 (517)
Q Consensus       217 ~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~  296 (517)
                      .+.||..+++.+.|+.+|.+|.+++.|.++.||-..++   +.+.++.+|++.|+|++.+.+.+.+++|+.|.++++||+
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nG---erlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv   81 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNG---ERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDV   81 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCC---ceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEc
Confidence            47899999999999999999999999999999988767   455899999999999999999999999999999999999


Q ss_pred             CCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCC---ceeEEEEeCC-------CCe-eEeeeCcCCCceEEEEEccCC
Q 042434          297 ETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDT---EKGIFMCDCD-------GNE-IKAWRGTRIPKVLDLAVTPDG  365 (517)
Q Consensus       297 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~---~v~i~~~~~~-------~~~-~~~~~~~~~~~i~~~~~~~~~  365 (517)
                      ++|+++..+ ....+|..+.|+++|++++.+..+.   ...|.+++.+       ++. ...+..+. +.++.+.|.|-+
T Consensus        82 ~tGk~la~~-k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~-skit~a~Wg~l~  159 (327)
T KOG0643|consen   82 ETGKQLATW-KTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD-SKITSALWGPLG  159 (327)
T ss_pred             CCCcEEEEe-ecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCc-cceeeeeecccC
Confidence            999999998 5677899999999999888876542   1226666665       222 34444433 689999999999


Q ss_pred             CEEEEEeCCCcEEEEECCCce---EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEE
Q 042434          366 ENLISVLSDKDIRILNLGTYA---ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVI  442 (517)
Q Consensus       366 ~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i  442 (517)
                      +.+++|..+|.|.+||++++.   .....|...|+.+.++++..++++++.|.+-++||..+. ....++....+    +
T Consensus       160 ~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl-~v~Kty~te~P----v  234 (327)
T KOG0643|consen  160 ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL-EVLKTYTTERP----V  234 (327)
T ss_pred             CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce-eeEEEeeeccc----c
Confidence            999999999999999999976   333467789999999999999999999999999999876 55555554433    6


Q ss_pred             EeecCCCCCcEEEEecCCCc--------------EEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEE
Q 042434          443 RSCFGGLDGTFIASGSENSQ--------------IYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRI  508 (517)
Q Consensus       443 ~~~~~s~~~~~l~~~~~dg~--------------i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~i  508 (517)
                      .+.+++|-...++.|+....              -++|++-..+.+..+++|-++|++|+|+|+| +..+||+.||.||+
T Consensus       235 N~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdG-ksYsSGGEDG~VR~  313 (327)
T KOG0643|consen  235 NTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDG-KSYSSGGEDGYVRL  313 (327)
T ss_pred             cceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCC-cccccCCCCceEEE
Confidence            66777887777776653221              1222222234566788999999999999999 79999999999999


Q ss_pred             eCCC
Q 042434          509 WGPC  512 (517)
Q Consensus       509 w~~~  512 (517)
                      ..+.
T Consensus       314 h~Fd  317 (327)
T KOG0643|consen  314 HHFD  317 (327)
T ss_pred             EEec
Confidence            7654

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=6.7e-34  Score=239.62  Aligned_cols=347  Identities=21%  Similarity=0.322  Sum_probs=260.1

Q ss_pred             hCCCCCCCCcchHHHHHHHHHHhccccccCCCCC----------ccccccC--CCcccccCCCcccEEEeccccCcEEEE
Q 042434          161 LLPPPEVVPERRLEHLVETAVTSQIDSCQYHNSS----------VAISLYE--DHCCGRDQIPTETVQILTEHKNEVWFV  228 (517)
Q Consensus       161 ~~~~~~~~~~~rl~~l~~~~~~~q~~~~~~~~~~----------~~~~~~~--~~~~~~~~~~~~~~~~l~~h~~~v~~~  228 (517)
                      ..|.+...|++||.+++....+..-..-......          ..+.+.-  +....-...+.-....+..|++++.+.
T Consensus        39 ~~~~~~~~PserLl~lv~~gmq~~~d~~~~~~~~S~~~~t~p~~~giDle~dadaq~~s~e~~~yEt~ylt~HK~~cR~a  118 (430)
T KOG0640|consen   39 MTPANICAPSERLLHLVAKGMQAENDGDLRAVSSSVLLITTPVTAGIDLEFDADAQGSSPEPSEYETKYLTSHKSPCRAA  118 (430)
T ss_pred             cCcCCCCCCHHHHHHHHHHHhhcccCcceecccccccceeccCcCceeeeeccccccCCCCCcccceEEEeecccceeee
Confidence            3456677899999999877666543322211111          1111111  112222233444566788999999999


Q ss_pred             EECCCCCEEEEeeCCCcEEEEEecC---------------CCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEE
Q 042434          229 QFSNNGEYLASSSSDCSAIIWKVLE---------------DSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKL  293 (517)
Q Consensus       229 ~~s~~~~~l~t~~~dg~i~iw~~~~---------------~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i  293 (517)
                      +|||||.++|||+.|.+|+|.|++.               ...-..++++..|.+.|+++.|+|....|++|+.|++|++
T Consensus       119 afs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKl  198 (430)
T KOG0640|consen  119 AFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKL  198 (430)
T ss_pred             eeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEE
Confidence            9999999999999999999999851               1123567899999999999999999999999999999999


Q ss_pred             EECCCCcEEEEeC--CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEe---eeCcCCCceEEEEEccCCCEE
Q 042434          294 WDVETGICKHTFG--DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKA---WRGTRIPKVLDLAVTPDGENL  368 (517)
Q Consensus       294 wd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~l  368 (517)
                      +|+......+.++  ....+|.++.|+|.|.++++|..-..  +.+||..+.+...   ....+.+.|+++.+++.|+..
T Consensus       199 FDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~--~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lY  276 (430)
T KOG0640|consen  199 FDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPT--LRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLY  276 (430)
T ss_pred             EecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCc--eeEEeccceeEeeecCcccccccceeEEEecCCccEE
Confidence            9997654333332  44678999999999999999999988  6666766544322   233455689999999999999


Q ss_pred             EEEeCCCcEEEEECCCce-EEee---ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccC---ceE
Q 042434          369 ISVLSDKDIRILNLGTYA-ERVI---SEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQN---KYV  441 (517)
Q Consensus       369 ~~~~~dg~i~i~d~~~~~-~~~~---~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~---~~~  441 (517)
                      ++++.||.|++||--+.+ ...+   ..+..|.+..|..+++++++.+.|..+++|.+.++ ..+..+.|....   ...
T Consensus       277 vTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~-R~l~~YtGAg~tgrq~~r  355 (430)
T KOG0640|consen  277 VTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG-RMLKEYTGAGTTGRQKHR  355 (430)
T ss_pred             EEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC-ceEEEEecCCcccchhhh
Confidence            999999999999987766 2222   23457999999999999999999999999999887 666666655221   112


Q ss_pred             EEeecCCCCCcEEEEecC-CCcEEEEecCCCceeEEec-CCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCC
Q 042434          442 IRSCFGGLDGTFIASGSE-NSQIYIWNRRNSKPIEILS-GHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPC  512 (517)
Q Consensus       442 i~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~  512 (517)
                      ...++ .....|++.-.+ .+.+.-||.+++..+..+. +|.+.+..+.-+|.++ .++|||+|-.+|+|--+
T Consensus       356 tqAvF-NhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p-~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  356 TQAVF-NHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEP-AFMTCSDDFRARFWYRR  426 (430)
T ss_pred             hhhhh-cCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCC-ceeeecccceeeeeeec
Confidence            22333 455566665543 4689999999987665554 7999999999999995 89999999999999654

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=5.8e-35  Score=275.68  Aligned_cols=248  Identities=20%  Similarity=0.325  Sum_probs=219.5

Q ss_pred             EEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCC-------------------------------cEEEEeCCC
Q 042434          260 KHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETG-------------------------------ICKHTFGDH  308 (517)
Q Consensus       260 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~-------------------------------~~~~~~~~~  308 (517)
                      ..++......++|..|++|+..||.|..|..|++|.+...                               ...+++-+|
T Consensus       371 ~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH  450 (707)
T KOG0263|consen  371 MYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGH  450 (707)
T ss_pred             EEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecC
Confidence            3444445677999999999999999999999999988631                               112345689


Q ss_pred             CCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--
Q 042434          309 GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--  386 (517)
Q Consensus       309 ~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--  386 (517)
                      .++|..+.|+|+.++|++++.|++  +.+|.+.+........+|..+|.++.|+|.|-++++++.|++.++|......  
T Consensus       451 ~GPVyg~sFsPd~rfLlScSED~s--vRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~Pl  528 (707)
T KOG0263|consen  451 SGPVYGCSFSPDRRFLLSCSEDSS--VRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPL  528 (707)
T ss_pred             CCceeeeeecccccceeeccCCcc--eeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCch
Confidence            999999999999999999999999  7777777666555555676799999999999999999999999999988766  


Q ss_pred             EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEE
Q 042434          387 ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIW  466 (517)
Q Consensus       387 ~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw  466 (517)
                      .....|...+.|+.|+|++.|+++|+.|.++++||+.++ ..++.|.||..+   +.++.+||+|++|++|++||.|.+|
T Consensus       529 RifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G-~~VRiF~GH~~~---V~al~~Sp~Gr~LaSg~ed~~I~iW  604 (707)
T KOG0263|consen  529 RIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTG-NSVRIFTGHKGP---VTALAFSPCGRYLASGDEDGLIKIW  604 (707)
T ss_pred             hhhcccccccceEEECCcccccccCCCCceEEEEEcCCC-cEEEEecCCCCc---eEEEEEcCCCceEeecccCCcEEEE
Confidence            566788899999999999999999999999999999988 789999999887   6667779999999999999999999


Q ss_pred             ecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCC
Q 042434          467 NRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQS  514 (517)
Q Consensus       467 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~  514 (517)
                      |+.+++++..+.+|++.|.++.|+.+| .+||+||.|.+|++||+...
T Consensus       605 Dl~~~~~v~~l~~Ht~ti~SlsFS~dg-~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  605 DLANGSLVKQLKGHTGTIYSLSFSRDG-NVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             EcCCCcchhhhhcccCceeEEEEecCC-CEEEecCCCCeEEEEEchhh
Confidence            999999999999999999999999999 79999999999999998653

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.8e-34  Score=260.73  Aligned_cols=285  Identities=18%  Similarity=0.281  Sum_probs=254.5

Q ss_pred             EEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEE
Q 042434          215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLW  294 (517)
Q Consensus       215 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw  294 (517)
                      .+.+..|+..|.++.|+|...+++++-.+|.|.||+.++.   ..++.+.-..-+|.+..|-+..+++++|+.|..|+||
T Consensus         6 krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetq---tmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVf   82 (794)
T KOG0276|consen    6 KRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQ---TMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVF   82 (794)
T ss_pred             hhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccc---eeeeeeeecccchhhheeeeccceEEEecCCceEEEE
Confidence            3455669999999999999999999999999999999655   6667787788999999999999999999999999999


Q ss_pred             ECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEcc-CCCEEEEEeC
Q 042434          295 DVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTP-DGENLISVLS  373 (517)
Q Consensus       295 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~  373 (517)
                      +..+++.++.|..|...|.+++.+|...+++++|.|-.+++|.|+..-.+.+.+.+|. ..|.+++|+| |.+.+++++-
T Consensus        83 nynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~-HyVMqv~fnPkD~ntFaS~sL  161 (794)
T KOG0276|consen   83 NYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHE-HYVMQVAFNPKDPNTFASASL  161 (794)
T ss_pred             ecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcc-eEEEEEEecCCCccceeeeec
Confidence            9999999999999999999999999999999999999988888887766666776665 5899999999 5669999999


Q ss_pred             CCcEEEEECCCce--EEeeccCCCeeEEEEcCCC--CEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCC
Q 042434          374 DKDIRILNLGTYA--ERVISEEHPITSLSVSVDC--KNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGL  449 (517)
Q Consensus       374 dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~--~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~  449 (517)
                      |++|++|.+.+..  ....+|...|+++.+-+-|  .++++|+.|..+++||.++. ..+.++.||.+.   +..++++|
T Consensus       162 DrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk-~CV~TLeGHt~N---vs~v~fhp  237 (794)
T KOG0276|consen  162 DRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK-SCVQTLEGHTNN---VSFVFFHP  237 (794)
T ss_pred             cccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH-HHHHHhhccccc---ceEEEecC
Confidence            9999999998876  6667899999999998844  68999999999999999988 899999999988   66777799


Q ss_pred             CCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEE
Q 042434          450 DGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRI  508 (517)
Q Consensus       450 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~i  508 (517)
                      .-..+++|++||+++||+..+-++..++.-.-..|.+++-.+.+ ..++.|.+.|.|.+
T Consensus       238 ~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~-~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  238 ELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGD-GKIAVGFDEGSVTV  295 (794)
T ss_pred             CCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCC-CeEEEeccCCcEEE
Confidence            99999999999999999999999888888778899999999887 57888887776643

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=3.4e-33  Score=229.96  Aligned_cols=287  Identities=21%  Similarity=0.353  Sum_probs=239.8

Q ss_pred             EEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCC-CCeEEEEeCCCeEEEE
Q 042434          216 QILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPD-DTKLLTCGNAEVLKLW  294 (517)
Q Consensus       216 ~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~iw  294 (517)
                      +.+.+|...|.+++|+.+|..|++|+.|+++.+|+++.. .........+|.+.|-.++|+|. ...+++++.|.+|++|
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~-r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w   92 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERD-RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW   92 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecch-hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence            567789999999999999999999999999999999765 33444567889999999999984 5789999999999999


Q ss_pred             ECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCC
Q 042434          295 DVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSD  374 (517)
Q Consensus       295 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  374 (517)
                      |+..+++........+. .-+.|+|+|.++++++.|..  |-.+|.+...+..-.... -.+..++|+-++..++.....
T Consensus        93 d~r~~k~~~~i~~~~en-i~i~wsp~g~~~~~~~kdD~--it~id~r~~~~~~~~~~~-~e~ne~~w~~~nd~Fflt~Gl  168 (313)
T KOG1407|consen   93 DIRSGKCTARIETKGEN-INITWSPDGEYIAVGNKDDR--ITFIDARTYKIVNEEQFK-FEVNEISWNNSNDLFFLTNGL  168 (313)
T ss_pred             EeccCcEEEEeeccCcc-eEEEEcCCCCEEEEecCccc--EEEEEecccceeehhccc-ceeeeeeecCCCCEEEEecCC
Confidence            99999999888555444 45789999999999999998  777777765544333322 267889999888888888888


Q ss_pred             CcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCc
Q 042434          375 KDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGT  452 (517)
Q Consensus       375 g~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  452 (517)
                      |.|.|......+  .....|.....++.|+|+|+++++|+.|..+.+||+... ...+.+..+.   +.++.+.|+.||+
T Consensus       169 G~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL-iC~R~isRld---wpVRTlSFS~dg~  244 (313)
T KOG1407|consen  169 GCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL-ICERCISRLD---WPVRTLSFSHDGR  244 (313)
T ss_pred             ceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHh-hhheeecccc---CceEEEEeccCcc
Confidence            999999988776  555677778889999999999999999999999999765 4455555443   4588888899999


Q ss_pred             EEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCC---------CcEEEeCCCC
Q 042434          453 FIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDD---------HTIRIWGPCQ  513 (517)
Q Consensus       453 ~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~d---------g~v~iw~~~~  513 (517)
                      +||+|++|..|-|=++++|..+..++ +.++-..|+|+|.. .+||-+.+|         |+|++|.+.+
T Consensus       245 ~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~-~LLAyA~ddk~~d~~reag~vKiFG~~~  312 (313)
T KOG1407|consen  245 MLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKR-PLLAYACDDKDGDSNREAGTVKIFGLSN  312 (313)
T ss_pred             eeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCC-ceeeEEecCCCCccccccceeEEecCCC
Confidence            99999999999999999999999997 78999999999998 577776654         6788887654

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.1e-34  Score=247.79  Aligned_cols=378  Identities=20%  Similarity=0.275  Sum_probs=289.3

Q ss_pred             chHHHHHHHHHHHhhcChHHHHHHHhhhcCeeecChhHHHHHHHHHcCChHHHHHHhhcccCCChhhhcccchhhhhhhh
Q 042434           15 KKYEFVRVVVQCLYSLGYQKSASCLESESGVSYKSKGFERLEVQILNGDWDGCIDTLIAITDLNDERRASVLFPVFKQCF   94 (517)
Q Consensus        15 ~~~~~~~li~q~L~~~g~~~s~~~l~~Esg~~~~~~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~   94 (517)
                      .++||.+-|..++-.|||.++...+-+|+...-   ....+..-+++-.|+.+..+-+                    ++
T Consensus         9 ~~~ei~~aiadl~g~n~~~es~~i~~~~~~~~~---~~~~~~g~ll~kkwtSv~rlqK--------------------ki   65 (406)
T KOG0295|consen    9 QRDEINMAIADLSGSNGYSESDRIFHKEASLAT---EMRKKDGGLLEKKWTSVDRLQK--------------------KI   65 (406)
T ss_pred             chHHHHHHHHhhhccccccccceeEeecCCCcc---cccccccceeeccccccchhHH--------------------HH
Confidence            567899999999999999999999999986533   3344556677788886543322                    22


Q ss_pred             hHhhhcCChhHHHHHHHhhcccCCCChhHHhhhhhccccccccccccCCcchhhhHHHHHHHHHHHhCCCCCCCCcchHH
Q 042434           95 LEYLNRGDDSLALNVLRKRVSSLQMSKDTIHNLASSMLCLEGMNLGKIDEGVVLELRKRLLVELERLLPPPEVVPERRLE  174 (517)
Q Consensus        95 ~el~~~~~~~~a~~~lr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~rl~  174 (517)
                      .||.. + ++++    ..++.+-...                        +   ..|           .+..-+|+..|.
T Consensus        66 ~~Les-~-l~~~----~~el~~g~pt------------------------~---~~~-----------~~~~wipRp~l~  101 (406)
T KOG0295|consen   66 RELES-K-LDET----GDELIAGDPT------------------------G---SKR-----------TPALWIPRPNLV  101 (406)
T ss_pred             HHHHh-h-hccc----ccccccCCCC------------------------c---Ccc-----------ChhhcCCCCCch
Confidence            22221 0 0000    1111111100                        0   000           000112222233


Q ss_pred             HHHHHHHHhccccccCCCCCcc-cccc-CCCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEec
Q 042434          175 HLVETAVTSQIDSCQYHNSSVA-ISLY-EDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVL  252 (517)
Q Consensus       175 ~l~~~~~~~q~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~  252 (517)
                      .-+.+ ...++....|||.... +..+ +..+..++..+++....++||.+.|..++|+..|+++|+++.|=.+.+||..
T Consensus       102 ~~l~g-~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~  180 (406)
T KOG0295|consen  102 QKLAG-HRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFD  180 (406)
T ss_pred             hhhhc-cccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHH
Confidence            33333 6788888889988773 3333 4456678899999999999999999999999999999999999999999996


Q ss_pred             CCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCc
Q 042434          253 EDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTE  332 (517)
Q Consensus       253 ~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~  332 (517)
                        .....++.+.+|...|.++.|-|.|.++++++.|.+|+.|++.+|-++.++.+|...|..++.+.||..+++++.|.+
T Consensus       181 --~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqt  258 (406)
T KOG0295|consen  181 --TFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQT  258 (406)
T ss_pred             --HHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCce
Confidence              335667788899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEEEeCCCCeeEeeeCcCCCceEEEEEccC---------------CCEEEEEeCCCcEEEEECCCce--EEeeccCCC
Q 042434          333 KGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPD---------------GENLISVLSDKDIRILNLGTYA--ERVISEEHP  395 (517)
Q Consensus       333 v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---------------~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~  395 (517)
                        +.+|-..++..+.....+..+|.+++|.|.               +.++.+++.|++|++||+.++.  ....+|...
T Consensus       259 --l~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnw  336 (406)
T KOG0295|consen  259 --LRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNW  336 (406)
T ss_pred             --EEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccce
Confidence              555555554443333344457888888763               2489999999999999999998  677789999


Q ss_pred             eeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEec
Q 042434          396 ITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNR  468 (517)
Q Consensus       396 i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~  468 (517)
                      |..++|+|.|+|++++..|+++++||+++. .....+..|..-   +.+..++.+-.++++|+-|.++++|..
T Consensus       337 Vr~~af~p~Gkyi~ScaDDktlrvwdl~~~-~cmk~~~ah~hf---vt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  337 VRGVAFSPGGKYILSCADDKTLRVWDLKNL-QCMKTLEAHEHF---VTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             eeeeEEcCCCeEEEEEecCCcEEEEEeccc-eeeeccCCCcce---eEEEecCCCCceEEeccccceeeeeec
Confidence            999999999999999999999999999887 556666666553   556666778889999999999999974

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=100.00  E-value=9.2e-33  Score=242.87  Aligned_cols=281  Identities=17%  Similarity=0.255  Sum_probs=235.6

Q ss_pred             cCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcE
Q 042434          222 KNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGIC  301 (517)
Q Consensus       222 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~  301 (517)
                      ...|+++...|....+++|+.|..+.++|...+   +...++.||...|+.+.|+|+...+++++.|..|+||......+
T Consensus       219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~---q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~  295 (506)
T KOG0289|consen  219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSN---QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE  295 (506)
T ss_pred             CCCeeEEeecCCCCcceecCCCCceEEEecchh---hhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC
Confidence            346778888888789999999999999998655   56688999999999999999999999999999999999988888


Q ss_pred             EEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC-CeeEeeeC-cCCCceEEEEEccCCCEEEEEeCCCcEEE
Q 042434          302 KHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG-NEIKAWRG-TRIPKVLDLAVTPDGENLISVLSDKDIRI  379 (517)
Q Consensus       302 ~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  379 (517)
                      ......|..+|+.+..+|.|.||++++.|++  ....|.+. ..+..... ...-.+++.+|+|||..+.+|..||.++|
T Consensus       296 ~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~--w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vki  373 (506)
T KOG0289|consen  296 PTSSRPHEEPVTGLSLHPTGEYLLSASNDGT--WAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKI  373 (506)
T ss_pred             ccccccccccceeeeeccCCcEEEEecCCce--EEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEE
Confidence            8888899999999999999999999999998  55555553 33333332 22236899999999999999999999999


Q ss_pred             EECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEe
Q 042434          380 LNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASG  457 (517)
Q Consensus       380 ~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  457 (517)
                      ||+.+..  ..+..|.++|..++|+.+|-++++++.|+.|++||++.. ....++.....  ..+..+.|.+.|.+++.+
T Consensus       374 wdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl-~n~kt~~l~~~--~~v~s~~fD~SGt~L~~~  450 (506)
T KOG0289|consen  374 WDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKL-KNFKTIQLDEK--KEVNSLSFDQSGTYLGIA  450 (506)
T ss_pred             EEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhh-cccceeecccc--ccceeEEEcCCCCeEEee
Confidence            9998877  666779999999999999999999999999999999876 33333332221  235566668999999999


Q ss_pred             cCCCcEEEEec--CCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCC
Q 042434          458 SENSQIYIWNR--RNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGP  511 (517)
Q Consensus       458 ~~dg~i~iwd~--~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~  511 (517)
                      +.|=+|++++-  +++.++..+..|.+..+++.|.... .+++++|.|..++++.+
T Consensus       451 g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~a-q~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  451 GSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHA-QYLASTSMDAILRLYAL  505 (506)
T ss_pred             cceeEEEEEecccccceeeehhhhcccccceeeecccc-eEEeeccchhheEEeec
Confidence            88877777763  3567888888899999999999888 79999999999998865

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=100.00  E-value=7e-35  Score=254.67  Aligned_cols=299  Identities=24%  Similarity=0.386  Sum_probs=252.9

Q ss_pred             CcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeE
Q 042434          203 HCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKL  282 (517)
Q Consensus       203 ~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l  282 (517)
                      ..+.-+.+|......+..|.+.|..+.|-++...|++|+.|..|++|++..++ .....++.+..++|+++.|.+++..+
T Consensus       156 d~~v~~~lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~~~  234 (459)
T KOG0288|consen  156 DHFVEDTLPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNKHV  234 (459)
T ss_pred             chhhhcccchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCceE
Confidence            45667788999999999999999999999999999999999999999997543 56778888889999999999999999


Q ss_pred             EEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCC-eeEeeeCcCCCceEEEEE
Q 042434          283 LTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGN-EIKAWRGTRIPKVLDLAV  361 (517)
Q Consensus       283 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~-~~~~~~~~~~~~i~~~~~  361 (517)
                      ++++.|+.+++|++...+...++.+|...|+++.|......+++|+.|.+  +..||+... +.+......  .+.+++.
T Consensus       235 iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRt--iK~WDl~k~~C~kt~l~~S--~cnDI~~  310 (459)
T KOG0288|consen  235 IAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRT--IKLWDLQKAYCSKTVLPGS--QCNDIVC  310 (459)
T ss_pred             EeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccch--hhhhhhhhhheeccccccc--cccceEe
Confidence            99999999999999999999999999999999999988777999999999  888888753 333333222  4556665


Q ss_pred             ccCCCEEEEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCccc-Cc
Q 042434          362 TPDGENLISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQ-NK  439 (517)
Q Consensus       362 ~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-~~  439 (517)
                      +  ...+++|..|++|++||.++.. .......+.|+++..++++..+++++.|.++.+.|+++. .....+..... ..
T Consensus       311 ~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~-eI~~~~sA~g~k~a  387 (459)
T KOG0288|consen  311 S--ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTK-EIRQTFSAEGFKCA  387 (459)
T ss_pred             c--ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccc-cEEEEeeccccccc
Confidence            5  5578899999999999999887 556666779999999999999999999999999999886 44444432211 11


Q ss_pred             eEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCC--CeeEEEecCCCCcEEEEeeCCCcEEEeC
Q 042434          440 YVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSM--TVNCVSWNPKRPKMLASASDDHTIRIWG  510 (517)
Q Consensus       440 ~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~v~~~~~~~~~l~s~~~dg~v~iw~  510 (517)
                      ...+.+.|||++.|+++||.||.|+||++.++++...+.....  .|++++|+|.| ..+++++.++.+.+|.
T Consensus       388 sDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG-~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  388 SDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSG-SGLLSADKQKAVTLWT  459 (459)
T ss_pred             cccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCC-chhhcccCCcceEecC
Confidence            1244555699999999999999999999999999998886544  59999999999 6899999999999994

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.5e-33  Score=268.48  Aligned_cols=249  Identities=25%  Similarity=0.461  Sum_probs=214.0

Q ss_pred             cEEEec-cccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCC------------------------------e------
Q 042434          214 TVQILT-EHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDS------------------------------K------  256 (517)
Q Consensus       214 ~~~~l~-~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~------------------------------~------  256 (517)
                      ..+.+. .|.+.|+++.||+||+|||+||.||.|+||.+....                              .      
T Consensus       258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s  337 (712)
T KOG0283|consen  258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS  337 (712)
T ss_pred             EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence            345566 899999999999999999999999999999886500                              0      


Q ss_pred             ---------------------eeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEE
Q 042434          257 ---------------------LTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSC  315 (517)
Q Consensus       257 ---------------------~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i  315 (517)
                                           .+++..+.+|.+.|.++.||.+ ++|++++.|.+|++|++...+|++.| .|...|+|+
T Consensus       338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcV  415 (712)
T KOG0283|consen  338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCV  415 (712)
T ss_pred             ccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEE-ecCCeeEEE
Confidence                                 1244567899999999999965 59999999999999999999999999 899999999


Q ss_pred             EEeC-CCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceEEe----e
Q 042434          316 AWFP-DSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERV----I  390 (517)
Q Consensus       316 ~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----~  390 (517)
                      +|+| |.++|++|+-||.  +.+|++....+..|...+ .-|++++|.|||+..++|+.+|.+++|++...+...    .
T Consensus       416 aFnPvDDryFiSGSLD~K--vRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~  492 (712)
T KOG0283|consen  416 AFNPVDDRYFISGSLDGK--VRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIR  492 (712)
T ss_pred             EecccCCCcEeecccccc--eEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEe
Confidence            9999 7889999999999  888999999998888777 489999999999999999999999999998876211    1


Q ss_pred             ------ccCCCeeEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcE
Q 042434          391 ------SEEHPITSLSVSVD-CKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQI  463 (517)
Q Consensus       391 ------~~~~~i~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i  463 (517)
                            .....|+.+.|.|. ...+++.+.|..|+|||.+.. ..+.++.|+......+.+.+ +.||++|+++++|..|
T Consensus       493 ~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~-~lv~KfKG~~n~~SQ~~Asf-s~Dgk~IVs~seDs~V  570 (712)
T KOG0283|consen  493 LHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK-DLVHKFKGFRNTSSQISASF-SSDGKHIVSASEDSWV  570 (712)
T ss_pred             eccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccch-hhhhhhcccccCCcceeeeE-ccCCCEEEEeecCceE
Confidence                  11337999999984 446999999999999999776 78888888887776676665 6699999999999999


Q ss_pred             EEEecC
Q 042434          464 YIWNRR  469 (517)
Q Consensus       464 ~iwd~~  469 (517)
                      ++|+..
T Consensus       571 YiW~~~  576 (712)
T KOG0283|consen  571 YIWKND  576 (712)
T ss_pred             EEEeCC
Confidence            999974

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.2e-34  Score=252.75  Aligned_cols=244  Identities=17%  Similarity=0.329  Sum_probs=221.0

Q ss_pred             CCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeE
Q 042434          267 QNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIK  346 (517)
Q Consensus       267 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~  346 (517)
                      ..+|..+.|.|+|+.|++|+..|.+.+|+..+-.....++.|+.+|+++.|++++.++++|+.+|.  |..|+...+.++
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~--iKyWqpnmnnVk  173 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGM--IKYWQPNMNNVK  173 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCce--EEecccchhhhH
Confidence            567999999999999999999999999998554444455689999999999999999999999999  888999888888


Q ss_pred             eeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 042434          347 AWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAG  424 (517)
Q Consensus       347 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~  424 (517)
                      .+..++...|++++|+|+...+++++.||+|+|||....+  ....+|.-.|.++.|+|....+++++.|+.|++||.++
T Consensus       174 ~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS  253 (464)
T KOG0284|consen  174 IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS  253 (464)
T ss_pred             HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCC
Confidence            8888887799999999999999999999999999998776  56678888999999999999999999999999999999


Q ss_pred             CCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCC
Q 042434          425 KWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDH  504 (517)
Q Consensus       425 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg  504 (517)
                      + ..+..+.+|...   +..+.|++++++|+++|.|..++++|+++.+.+.++++|...|+++.|+|-.+.+|++|+.||
T Consensus       254 g-~cl~tlh~HKnt---Vl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dg  329 (464)
T KOG0284|consen  254 G-SCLATLHGHKNT---VLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDG  329 (464)
T ss_pred             c-chhhhhhhccce---EEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCC
Confidence            8 788888888876   555566999999999999999999999999999999999999999999998889999999999


Q ss_pred             cEEEeCCCCCCC
Q 042434          505 TIRIWGPCQSSE  516 (517)
Q Consensus       505 ~v~iw~~~~~~~  516 (517)
                      .|..|.+...++
T Consensus       330 svvh~~v~~~~p  341 (464)
T KOG0284|consen  330 SVVHWVVGLEEP  341 (464)
T ss_pred             ceEEEecccccc
Confidence            999999874443

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=2.4e-33  Score=240.66  Aligned_cols=250  Identities=22%  Similarity=0.304  Sum_probs=226.4

Q ss_pred             eeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEE
Q 042434          257 LTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIF  336 (517)
Q Consensus       257 ~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~  336 (517)
                      ++..+.+.+|.+.|.|+++.|.+.++++|+.|++++|||+.+|+...++.+|...|..+++++-..++++++.|+.  |.
T Consensus       141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~--VK  218 (460)
T KOG0285|consen  141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQ--VK  218 (460)
T ss_pred             ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCe--eE
Confidence            4566778999999999999999999999999999999999999999999999999999999999999999999999  88


Q ss_pred             EEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCC
Q 042434          337 MCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNS  414 (517)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d  414 (517)
                      .||+..+.+..-..+|.+.|.+++.+|.-..+++|+.|.++++||+++..  ....+|..+|.++.+.|-...+++|+.|
T Consensus       219 CwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D  298 (460)
T KOG0285|consen  219 CWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHD  298 (460)
T ss_pred             EEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCC
Confidence            89998766655555666799999999999999999999999999999987  5666799999999999988999999999


Q ss_pred             CeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCC
Q 042434          415 QEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRP  494 (517)
Q Consensus       415 ~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~  494 (517)
                      ++|++||++.+ .....+..|...   +++++.+|....+|+++.|. |+-|++..|..+..+.+|.+.|++++.+.|+ 
T Consensus       299 ~tvrlWDl~ag-kt~~tlt~hkks---vral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~-  372 (460)
T KOG0285|consen  299 STVRLWDLRAG-KTMITLTHHKKS---VRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-  372 (460)
T ss_pred             ceEEEeeeccC-ceeEeeecccce---eeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccCc-
Confidence            99999999887 555666666654   77777799999999999885 9999999999999999999999999999998 


Q ss_pred             cEEEEeeCCCcEEEeCCCCCC
Q 042434          495 KMLASASDDHTIRIWGPCQSS  515 (517)
Q Consensus       495 ~~l~s~~~dg~v~iw~~~~~~  515 (517)
                       ++++|++.|.+..||.++|-
T Consensus       373 -v~~~G~dng~~~fwdwksg~  392 (460)
T KOG0285|consen  373 -VLVSGGDNGSIMFWDWKSGH  392 (460)
T ss_pred             -eEEEcCCceEEEEEecCcCc
Confidence             79999999999999998763

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1e-32  Score=258.22  Aligned_cols=287  Identities=21%  Similarity=0.306  Sum_probs=249.4

Q ss_pred             EEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEE
Q 042434          216 QILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWD  295 (517)
Q Consensus       216 ~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd  295 (517)
                      ..+.||...|.++++|.+...+++|+. +.+++|+..+.   +.++++.  .+.+.+..|.|.++++++|...|.+.++|
T Consensus       367 i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~---kciRTi~--~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfd  440 (888)
T KOG0306|consen  367 IEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTL---KCIRTIT--CGYILASKFVPGDRYIVLGTKNGELQVFD  440 (888)
T ss_pred             eeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCc---ceeEEec--cccEEEEEecCCCceEEEeccCCceEEEE
Confidence            467799999999999999988888764 68999999655   5556665  34899999999999999999999999999


Q ss_pred             CCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCC----CCeeEeeeCc------CCCceEEEEEccCC
Q 042434          296 VETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD----GNEIKAWRGT------RIPKVLDLAVTPDG  365 (517)
Q Consensus       296 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~----~~~~~~~~~~------~~~~i~~~~~~~~~  365 (517)
                      +.+...+.+.+.|.+.|++++.+||+..+++||.|.+|++|.+...    +.+.+.+...      -...|.|+.+||||
T Consensus       441 laS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdg  520 (888)
T KOG0306|consen  441 LASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDG  520 (888)
T ss_pred             eehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCC
Confidence            9999999999999999999999999999999999999666654432    2111111111      12479999999999


Q ss_pred             CEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEE
Q 042434          366 ENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIR  443 (517)
Q Consensus       366 ~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~  443 (517)
                      ++++++--|.+++||-+.+.+  ....+|.-||.++.++||++.+++|+.|.+|++|-+.-+ .....+.+|...   +.
T Consensus       521 k~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG-DCHKS~fAHdDS---vm  596 (888)
T KOG0306|consen  521 KLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG-DCHKSFFAHDDS---VM  596 (888)
T ss_pred             cEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccc-hhhhhhhcccCc---ee
Confidence            999999999999999999988  778899999999999999999999999999999999877 777888888877   44


Q ss_pred             eecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434          444 SCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ  513 (517)
Q Consensus       444 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~  513 (517)
                      ++.|-|+...++++|.|+.|+-||-...+.+..+.+|...|++++.+|+| .+++|+|.|.+||+|....
T Consensus       597 ~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G-~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  597 SVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNG-SFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             EEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCC-CeEEeccCCceeEeeeccC
Confidence            44456899999999999999999999999999999999999999999999 7999999999999998654

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.8e-32  Score=255.26  Aligned_cols=320  Identities=21%  Similarity=0.319  Sum_probs=257.5

Q ss_pred             cccccCC-CCCc--cccccCCCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEE
Q 042434          185 IDSCQYH-NSSV--AISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKH  261 (517)
Q Consensus       185 ~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~  261 (517)
                      ...|... ++..  +++..++....++........++.||+.+|+++.|...|..||+||.|+.|.+||+-..   .-..
T Consensus        67 evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E---~Gl~  143 (888)
T KOG0306|consen   67 EVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGE---EGLF  143 (888)
T ss_pred             eEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccc---eeeE
Confidence            3445444 4444  67777777778888888889999999999999999999999999999999999999644   3446


Q ss_pred             EeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCC
Q 042434          262 TLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD  341 (517)
Q Consensus       262 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~  341 (517)
                      .+.+|.+.|+.+-|..+.++++++|.|+.|++||+++..|..+.-.|.+.++++++.+  +.+++++.|+.+++|.....
T Consensus       144 rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~  221 (888)
T KOG0306|consen  144 RLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFE  221 (888)
T ss_pred             EeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecc
Confidence            7899999999999999889999999999999999999999999999999999999987  78889999988666654211


Q ss_pred             CC-----------------------eeEee----------eC--------------------------------------
Q 042434          342 GN-----------------------EIKAW----------RG--------------------------------------  350 (517)
Q Consensus       342 ~~-----------------------~~~~~----------~~--------------------------------------  350 (517)
                      ..                       .+...          .+                                      
T Consensus       222 ~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~  301 (888)
T KOG0306|consen  222 DDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENED  301 (888)
T ss_pred             cccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhcccccccc
Confidence            10                       00000          00                                      


Q ss_pred             --------------------------------------------------------------------------------
Q 042434          351 --------------------------------------------------------------------------------  350 (517)
Q Consensus       351 --------------------------------------------------------------------------------  350 (517)
                                                                                                      
T Consensus       302 ~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~v  381 (888)
T KOG0306|consen  302 DVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCV  381 (888)
T ss_pred             chhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEe
Confidence                                                                                            


Q ss_pred             ----------------------------------------------------------------------cCCCceEEEE
Q 042434          351 ----------------------------------------------------------------------TRIPKVLDLA  360 (517)
Q Consensus       351 ----------------------------------------------------------------------~~~~~i~~~~  360 (517)
                                                                                            .|.+.+.+++
T Consensus       382 S~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~  461 (888)
T KOG0306|consen  382 SSDSILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSIS  461 (888)
T ss_pred             ecCceeeeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeee
Confidence                                                                                  2345666777


Q ss_pred             EccCCCEEEEEeCCCcEEEEECCCce--------------EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 042434          361 VTPDGENLISVLSDKDIRILNLGTYA--------------ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKW  426 (517)
Q Consensus       361 ~~~~~~~l~~~~~dg~i~i~d~~~~~--------------~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~  426 (517)
                      .+||++.+++|+.|.+|++||..-..              .........+.++.+||||++++++--|+++++|-+.+. 
T Consensus       462 ~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl-  540 (888)
T KOG0306|consen  462 LSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL-  540 (888)
T ss_pred             ecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecce-
Confidence            77777778888888888888753211              133344567788888888888888888888888887765 


Q ss_pred             ccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcE
Q 042434          427 EKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTI  506 (517)
Q Consensus       427 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v  506 (517)
                      +....+.||.-+   +.++-.+||++.+++||.|..|++|-+.-|.+-..+-+|.+.|.++.|.|.. +++.|||.|+.|
T Consensus       541 KFflsLYGHkLP---V~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~-~~FFt~gKD~kv  616 (888)
T KOG0306|consen  541 KFFLSLYGHKLP---VLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKT-HLFFTCGKDGKV  616 (888)
T ss_pred             eeeeeecccccc---eeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccc-eeEEEecCcceE
Confidence            555667788776   5566679999999999999999999999999999999999999999999987 899999999999


Q ss_pred             EEeCCCCC
Q 042434          507 RIWGPCQS  514 (517)
Q Consensus       507 ~iw~~~~~  514 (517)
                      +-||-..-
T Consensus       617 KqWDg~kF  624 (888)
T KOG0306|consen  617 KQWDGEKF  624 (888)
T ss_pred             Eeechhhh
Confidence            99986543

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3e-31  Score=225.15  Aligned_cols=290  Identities=20%  Similarity=0.315  Sum_probs=239.4

Q ss_pred             ccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeC--CCe
Q 042434          213 ETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGN--AEV  290 (517)
Q Consensus       213 ~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~--dg~  290 (517)
                      ++.+.+..-.+.|+++.|+++|.+|++++.|.+++|||..++.   ..+++..+.-.|..++|....+.++.++.  |.+
T Consensus         5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~---~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~t   81 (311)
T KOG1446|consen    5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGK---QVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDT   81 (311)
T ss_pred             ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCc---eeeEeecccccccEEEEecCCceEEEccCCCCCc
Confidence            3455666678999999999999999999999999999998774   44667777888999999877777777666  889


Q ss_pred             EEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEE
Q 042434          291 LKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLIS  370 (517)
Q Consensus       291 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  370 (517)
                      |+..++.+.+.++.|.+|...|.+++.+|-+..+++++.|++  |+.||++...........  .-..++|.|.|-.+|+
T Consensus        82 IryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~t--vrLWDlR~~~cqg~l~~~--~~pi~AfDp~GLifA~  157 (311)
T KOG1446|consen   82 IRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKT--VRLWDLRVKKCQGLLNLS--GRPIAAFDPEGLIFAL  157 (311)
T ss_pred             eEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCe--EEeeEecCCCCceEEecC--CCcceeECCCCcEEEE
Confidence            999999999999999999999999999999999999999999  888888743332222222  2345789999999999


Q ss_pred             EeCCCcEEEEECCCce----EEee---ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEE
Q 042434          371 VLSDKDIRILNLGTYA----ERVI---SEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIR  443 (517)
Q Consensus       371 ~~~dg~i~i~d~~~~~----~~~~---~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~  443 (517)
                      +.....|++||++...    ....   ......+.+.|+|||++++.++..+.+++.|.-.+ .....+.++.......-
T Consensus       158 ~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G-~~~~tfs~~~~~~~~~~  236 (311)
T KOG1446|consen  158 ANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDG-TVKSTFSGYPNAGNLPL  236 (311)
T ss_pred             ecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCC-cEeeeEeeccCCCCcce
Confidence            9988899999998763    2222   33567899999999999999999999999999777 57777777766543334


Q ss_pred             eecCCCCCcEEEEecCCCcEEEEecCCCceeEEecC-CCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434          444 SCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSG-HSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ  513 (517)
Q Consensus       444 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~  513 (517)
                      .+.++||++++++|+.||+|.+|++++|..+..+.+ +.+++.++.|+|.. .+++|+  +..+-+|=+..
T Consensus       237 ~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~-~mf~sa--~s~l~fw~p~~  304 (311)
T KOG1446|consen  237 SATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRY-AMFVSA--SSNLVFWLPDE  304 (311)
T ss_pred             eEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCce-eeeeec--CceEEEEeccc
Confidence            455599999999999999999999999999999998 68999999999987 466555  45688887654

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=3.6e-34  Score=244.79  Aligned_cols=271  Identities=20%  Similarity=0.295  Sum_probs=223.7

Q ss_pred             ccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc
Q 042434          221 HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI  300 (517)
Q Consensus       221 h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~  300 (517)
                      ....|+|+.+  |...+++|..|.+|+|||..   .......+.||++.|.|+.|.  .+.+++|+.|.+|+|||+++|+
T Consensus       196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n---~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge  268 (499)
T KOG0281|consen  196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKN---SLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGE  268 (499)
T ss_pred             cCCceEEEEe--cchhhhcccccCceEEeccc---cHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCc
Confidence            5678999998  44579999999999999984   446678899999999999995  6699999999999999999999


Q ss_pred             EEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCe---eEeeeCcCCCceEEEEEccCCCEEEEEeCCCcE
Q 042434          301 CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNE---IKAWRGTRIPKVLDLAVTPDGENLISVLSDKDI  377 (517)
Q Consensus       301 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  377 (517)
                      ++.++-.|...|..+.|+  ..++++++.|.+  +.+||+....   +.....+|...|+.+.|+  .+++++++.|.+|
T Consensus       269 ~l~tlihHceaVLhlrf~--ng~mvtcSkDrs--iaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTi  342 (499)
T KOG0281|consen  269 PLNTLIHHCEAVLHLRFS--NGYMVTCSKDRS--IAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTI  342 (499)
T ss_pred             hhhHHhhhcceeEEEEEe--CCEEEEecCCce--eEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceE
Confidence            999999999999999997  559999999999  6666765432   222333455678888885  4599999999999


Q ss_pred             EEEECCCceEE--eeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEE
Q 042434          378 RILNLGTYAER--VISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIA  455 (517)
Q Consensus       378 ~i~d~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  455 (517)
                      ++|++.+....  ..+|...|.|+.+  .++.+++|+.|.+|++||+..+ .....+.||..-...++     -|.+.++
T Consensus       343 kvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G-~cLRvLeGHEeLvRciR-----Fd~krIV  414 (499)
T KOG0281|consen  343 KVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG-ACLRVLEGHEELVRCIR-----FDNKRIV  414 (499)
T ss_pred             EEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEecccc-HHHHHHhchHHhhhhee-----ecCceee
Confidence            99999998843  3455556666554  6889999999999999999888 88888999988644443     3788999


Q ss_pred             EecCCCcEEEEecCCCc---------eeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434          456 SGSENSQIYIWNRRNSK---------PIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS  515 (517)
Q Consensus       456 ~~~~dg~i~iwd~~~~~---------~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~  515 (517)
                      +|+.||+|++||+..+.         ++.++..|++.|..+.|..   ..+++++.|.+|.|||+..+-
T Consensus       415 SGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~---fqIvsssHddtILiWdFl~~~  480 (499)
T KOG0281|consen  415 SGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDE---FQIISSSHDDTILIWDFLNGP  480 (499)
T ss_pred             eccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecc---eEEEeccCCCeEEEEEcCCCC
Confidence            99999999999998763         3455667999999999964   469999999999999987653

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=9.7e-33  Score=258.12  Aligned_cols=299  Identities=15%  Similarity=0.185  Sum_probs=252.2

Q ss_pred             cccccCCCcccEEEeccccCcEEEEEE-CCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeE
Q 042434          204 CCGRDQIPTETVQILTEHKNEVWFVQF-SNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKL  282 (517)
Q Consensus       204 ~~~~~~~~~~~~~~l~~h~~~v~~~~~-s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l  282 (517)
                      ...++.-..+..+.+-|..+.|..++| .|+.++||.++..+.+++|+..+...    ..+.+|+..|.+++...+|.+|
T Consensus       305 l~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c----~ii~GH~e~vlSL~~~~~g~ll  380 (775)
T KOG0319|consen  305 LFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYC----QIIPGHTEAVLSLDVWSSGDLL  380 (775)
T ss_pred             EEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCce----EEEeCchhheeeeeecccCcEE
Confidence            344555667788889999999999997 66889999999999999998764422    3788999999999966678899


Q ss_pred             EEEeCCCeEEEEECCCCc----EEEEeCCCCCceEEEEEeCCC-CeEEEeeCCCceeEEEEeCCC----CeeEe-----e
Q 042434          283 LTCGNAEVLKLWDVETGI----CKHTFGDHGFIVSSCAWFPDS-KRLVCGSSDTEKGIFMCDCDG----NEIKA-----W  348 (517)
Q Consensus       283 ~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~d~~v~i~~~~~~~----~~~~~-----~  348 (517)
                      ++|+.|.++++|.++++.    ++....+|...|.+++++..+ .+|+++|.|++  +.+|+...    .....     .
T Consensus       381 at~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~t--lK~W~l~~s~~~~~~~~~~~~~t  458 (775)
T KOG0319|consen  381 ATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCT--LKLWDLPKSKETAFPIVLTCRYT  458 (775)
T ss_pred             EEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCce--EEEecCCCcccccccceehhhHH
Confidence            999999999999885443    445567999999999997654 58899999999  55555543    11111     2


Q ss_pred             eCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 042434          349 RGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKW  426 (517)
Q Consensus       349 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~  426 (517)
                      ...|...|++++++|+.+.+++|+.|.+.++|++....  ....+|...+.++.|+|..+.+++++.|++|+||.+.+. 
T Consensus       459 ~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f-  537 (775)
T KOG0319|consen  459 ERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF-  537 (775)
T ss_pred             HHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccc-
Confidence            23455689999999999999999999999999999766  667789999999999999999999999999999999888 


Q ss_pred             ccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcE
Q 042434          427 EKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTI  506 (517)
Q Consensus       427 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v  506 (517)
                      ....++.||...+..  +.| -.+|..|++++.||-|++|++++++++.++.+|.+.|++++.+|.. .+++||+.||.|
T Consensus       538 SClkT~eGH~~aVlr--a~F-~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~-~~~~tgg~Dg~i  613 (775)
T KOG0319|consen  538 SCLKTFEGHTSAVLR--ASF-IRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLL-DMFVTGGGDGRI  613 (775)
T ss_pred             eeeeeecCccceeEe--eee-eeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCcc-ceeEecCCCeEE
Confidence            899999999886433  333 4688999999999999999999999999999999999999999999 699999999999


Q ss_pred             EEeCCCC
Q 042434          507 RIWGPCQ  513 (517)
Q Consensus       507 ~iw~~~~  513 (517)
                      .+|.=.+
T Consensus       614 ~~wkD~T  620 (775)
T KOG0319|consen  614 IFWKDVT  620 (775)
T ss_pred             EEeecCc
Confidence            9997544

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=7.9e-32  Score=233.24  Aligned_cols=291  Identities=21%  Similarity=0.305  Sum_probs=235.4

Q ss_pred             CCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCC---CeEEEEe
Q 042434          210 IPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDD---TKLLTCG  286 (517)
Q Consensus       210 ~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~---~~l~s~~  286 (517)
                      .|+++...+. |.+-|.++...  ++++++|+.||.+++||.. |   +...++.+|.++|.+++|.-.+   ..+++++
T Consensus        94 ~aP~pl~~~~-hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-G---k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas  166 (423)
T KOG0313|consen   94 TAPKPLQCFL-HDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-G---KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSAS  166 (423)
T ss_pred             CCCCcccccc-chhhhhhhccc--CceEEEeecCCeeEEEecC-C---ceEEEEecCCcceeeeEEEecCCccceEEEec
Confidence            3445555443 89999998887  7899999999999999975 2   4557889999999999886433   3599999


Q ss_pred             CCCeEEEEECCCCcE----EEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC--------------------
Q 042434          287 NAEVLKLWDVETGIC----KHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG--------------------  342 (517)
Q Consensus       287 ~dg~i~iwd~~~~~~----~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~--------------------  342 (517)
                      .|.++++|.++.+..    +....+|...|.++...++|..+++|+.|.++.||......                    
T Consensus       167 ~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~  246 (423)
T KOG0313|consen  167 MDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKE  246 (423)
T ss_pred             CCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhc
Confidence            999999999887743    33345999999999999999999999999994444411110                    


Q ss_pred             ---CeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEE
Q 042434          343 ---NEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIH  418 (517)
Q Consensus       343 ---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~  418 (517)
                         +.......+|..+|.++.|++ ...+++++.|.+|+.||+.++. ...........++..+|..+.+++|+.|..|+
T Consensus       247 ~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~ir  325 (423)
T KOG0313|consen  247 GGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIR  325 (423)
T ss_pred             ccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCcee
Confidence               001122235556899999998 7789999999999999999988 66667788999999999999999999999999


Q ss_pred             EEEcCCCC--ccceEEeCcccCceEEEeecCCCC-CcEEEEecCCCcEEEEecCCCc-eeEEecCCCCCeeEEEecCCCC
Q 042434          419 MWDVAGKW--EKPFKYTGHSQNKYVIRSCFGGLD-GTFIASGSENSQIYIWNRRNSK-PIEILSGHSMTVNCVSWNPKRP  494 (517)
Q Consensus       419 ~~d~~~~~--~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~v~~~~~~~  494 (517)
                      +||.+++.  .....+.+|..-   +..+.|+|. ...|++|+.|+++++||+++.+ ++..+.+|...|.++.|+..+ 
T Consensus       326 l~DPR~~~gs~v~~s~~gH~nw---Vssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~-  401 (423)
T KOG0313|consen  326 LWDPRTGDGSVVSQSLIGHKNW---VSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGG-  401 (423)
T ss_pred             ecCCCCCCCceeEEeeecchhh---hhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCc-
Confidence            99997653  344667788774   445555664 5678899999999999999987 999999999999999999764 


Q ss_pred             cEEEEeeCCCcEEEeCCCC
Q 042434          495 KMLASASDDHTIRIWGPCQ  513 (517)
Q Consensus       495 ~~l~s~~~dg~v~iw~~~~  513 (517)
                       .++|||.|.+|+|+.-..
T Consensus       402 -~IvSGGaD~~l~i~~~~~  419 (423)
T KOG0313|consen  402 -LIVSGGADNKLRIFKGSP  419 (423)
T ss_pred             -eEEeccCcceEEEecccc
Confidence             799999999999997653

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.3e-31  Score=260.20  Aligned_cols=281  Identities=24%  Similarity=0.339  Sum_probs=229.6

Q ss_pred             HhccccccCCCCCc-cccccCCC-cccccCCCcc--cEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCee
Q 042434          182 TSQIDSCQYHNSSV-AISLYEDH-CCGRDQIPTE--TVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKL  257 (517)
Q Consensus       182 ~~q~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~--~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~  257 (517)
                      ..-+..+.|+++.. ..+...+. ...+......  ..+.+.+|...|.+++|+|+|+++++|+.|++++|||+..  ..
T Consensus       159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~--~~  236 (456)
T KOG0266|consen  159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKD--DG  236 (456)
T ss_pred             cCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccC--CC
Confidence            34455556666665 22332333 3334443444  6777899999999999999999999999999999999942  23


Q ss_pred             eEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEE
Q 042434          258 TLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM  337 (517)
Q Consensus       258 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~  337 (517)
                      ...+++.+|...|++++|+|+++.+++|+.|++|+|||++++++...+.+|...|++++|++++++|++++.|+.  +.+
T Consensus       237 ~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~--i~v  314 (456)
T KOG0266|consen  237 RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGT--IRV  314 (456)
T ss_pred             eEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCcc--EEE
Confidence            567889999999999999999999999999999999999999999999999999999999999999999999999  888


Q ss_pred             EeCCCCe---eEeeeCcCCC-ceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCC---CeeEEEEcCCCCEE
Q 042434          338 CDCDGNE---IKAWRGTRIP-KVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEH---PITSLSVSVDCKNF  408 (517)
Q Consensus       338 ~~~~~~~---~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~---~i~~~~~s~~~~~l  408 (517)
                      ||..+..   .......... .+.++.|+|++.++++++.|+.+++||+....  .....+..   .+.+...++.+.++
T Consensus       315 wd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  394 (456)
T KOG0266|consen  315 WDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLI  394 (456)
T ss_pred             EECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeE
Confidence            9998766   3455555544 69999999999999999999999999999876  33333333   34455667899999


Q ss_pred             EEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEec--CCCcEEEEecC
Q 042434          409 IVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGS--ENSQIYIWNRR  469 (517)
Q Consensus       409 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~dg~i~iwd~~  469 (517)
                      ++++.|+.|++||+.+. .....+.+|.  ...+..+.+++..+++++++  .|+.+++|...
T Consensus       395 ~sg~~d~~v~~~~~~s~-~~~~~l~~h~--~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  395 YSGSEDGSVYVWDSSSG-GILQRLEGHS--KAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             EEEeCCceEEEEeCCcc-chhhhhcCCC--CCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            99999999999999886 7777888884  22355666689999999998  68899999754

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=100.00  E-value=1.6e-31  Score=239.90  Aligned_cols=302  Identities=18%  Similarity=0.238  Sum_probs=237.8

Q ss_pred             ccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCC-eeeEEEEe-ccCCCCEEEEEECCCCCeEEE
Q 042434          207 RDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDS-KLTLKHTL-RSHQNPVSFVAWSPDDTKLLT  284 (517)
Q Consensus       207 ~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~-~~~~~~~~-~~h~~~v~~l~~s~~~~~l~s  284 (517)
                      ...+|......+.+|+..|.++++.|.|..|++||.|..|++||+..-. .....+.+ ......|.++.|++.|..|++
T Consensus       152 ~~~IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLv  231 (641)
T KOG0772|consen  152 IKLIPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILV  231 (641)
T ss_pred             hhcCCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEE
Confidence            4567888889999999999999999999999999999999999996321 11112222 234567999999999999999


Q ss_pred             EeCCCeEEEEECCCCcEEE------------EeCCCCCceEEEEEeCCC-CeEEEeeCCCceeEEEEeCC--CCeeEeee
Q 042434          285 CGNAEVLKLWDVETGICKH------------TFGDHGFIVSSCAWFPDS-KRLVCGSSDTEKGIFMCDCD--GNEIKAWR  349 (517)
Q Consensus       285 ~~~dg~i~iwd~~~~~~~~------------~~~~~~~~v~~i~~~~~~-~~l~~~~~d~~v~i~~~~~~--~~~~~~~~  349 (517)
                      .+.....+|+|-.......            .-++|...++|.+|+|+. ..|++++.||+  +.+|+..  ..+...+.
T Consensus       232 vsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgt--lRiWdv~~~k~q~qVik  309 (641)
T KOG0772|consen  232 VSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGT--LRIWDVNNTKSQLQVIK  309 (641)
T ss_pred             EecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCc--EEEEecCCchhheeEEe
Confidence            9888999999964333222            225788999999999964 57999999999  5555554  33333332


Q ss_pred             C----cCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-----EEeeccCC--CeeEEEEcCCCCEEEEEeCCCeEE
Q 042434          350 G----TRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-----ERVISEEH--PITSLSVSVDCKNFIVNLNSQEIH  418 (517)
Q Consensus       350 ~----~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~--~i~~~~~s~~~~~l~~~~~d~~i~  418 (517)
                      .    ...-.++.++|+++|+.+++|+.||.|.+|+..+..     .....|..  .|+++.||++|++|++-+.|++++
T Consensus       310 ~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLK  389 (641)
T KOG0772|consen  310 TKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLK  389 (641)
T ss_pred             eccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCcee
Confidence            2    222368899999999999999999999999986644     22334444  899999999999999999999999


Q ss_pred             EEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecC------CCcEEEEecCCCceeEEecCCCCCeeEEEecCC
Q 042434          419 MWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSE------NSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPK  492 (517)
Q Consensus       419 ~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~  492 (517)
                      +||++...+.+....+.... +..+-|+|||+.++|++|+.      .|.+++||..+...+..+.-....|..+.|+|.
T Consensus       390 vWDLrq~kkpL~~~tgL~t~-~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Whpk  468 (641)
T KOG0772|consen  390 VWDLRQFKKPLNVRTGLPTP-FPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPK  468 (641)
T ss_pred             eeeccccccchhhhcCCCcc-CCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecch
Confidence            99999876776666655543 33445566999999999864      478999999999999998877889999999999


Q ss_pred             CCcEEEEeeCCCcEEEe-CCC
Q 042434          493 RPKMLASASDDHTIRIW-GPC  512 (517)
Q Consensus       493 ~~~~l~s~~~dg~v~iw-~~~  512 (517)
                      - +.+..|+.||+++|| |..
T Consensus       469 L-NQi~~gsgdG~~~vyYdp~  488 (641)
T KOG0772|consen  469 L-NQIFAGSGDGTAHVYYDPN  488 (641)
T ss_pred             h-hheeeecCCCceEEEECcc
Confidence            8 678888889999874 443

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.2e-31  Score=253.44  Aligned_cols=289  Identities=15%  Similarity=0.244  Sum_probs=243.0

Q ss_pred             EeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEEC
Q 042434          217 ILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDV  296 (517)
Q Consensus       217 ~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~  296 (517)
                      .++..+..|..++|+|...+++++-..|.|++||..-+   .++..|..|.++|..++|+|++.+++|||.|-.|+||+.
T Consensus         4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~---tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnY   80 (1202)
T KOG0292|consen    4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMG---TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNY   80 (1202)
T ss_pred             hhhcccccccceecCCCCCEEEEeecCceeeeehhhhh---hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEec
Confidence            45567788999999999999999999999999999655   566889999999999999999999999999999999999


Q ss_pred             CCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCc
Q 042434          297 ETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKD  376 (517)
Q Consensus       297 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  376 (517)
                      .+.+|+.++.+|-..|..+.|++.-..|+++|.|.+|+||.|..+ +++.... +|...|.|..|+|....+++++-|.+
T Consensus        81 k~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr-~~iavlt-GHnHYVMcAqFhptEDlIVSaSLDQT  158 (1202)
T KOG0292|consen   81 KTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR-KCIAVLT-GHNHYVMCAQFHPTEDLIVSASLDQT  158 (1202)
T ss_pred             ccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCC-ceEEEEe-cCceEEEeeccCCccceEEEecccce
Confidence            999999999999999999999999999999999999666666543 3334444 44468999999999999999999999


Q ss_pred             EEEEECCCce-------------------------------EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 042434          377 IRILNLGTYA-------------------------------ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK  425 (517)
Q Consensus       377 i~i~d~~~~~-------------------------------~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~  425 (517)
                      |+|||+...+                               ...-+|...|+-++|+|.-..+++|+.|..|++|.+...
T Consensus       159 VRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnet  238 (1202)
T KOG0292|consen  159 VRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET  238 (1202)
T ss_pred             EEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccc
Confidence            9999985422                               112245667899999999999999999999999998542


Q ss_pred             -CccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCC
Q 042434          426 -WEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDH  504 (517)
Q Consensus       426 -~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg  504 (517)
                       .=.+-+..+|..+   +.++.|+|...++++.|+|++|+|||+...+.+.++....+.-+.++-+|.. +++++ +.|+
T Consensus       239 KaWEvDtcrgH~nn---Vssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~l-NLfAA-gHDs  313 (1202)
T KOG0292|consen  239 KAWEVDTCRGHYNN---VSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPEL-NLFAA-GHDS  313 (1202)
T ss_pred             cceeehhhhcccCC---cceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCc-ceeee-ecCC
Confidence             1223345677766   5666679999999999999999999999999999998778899999999998 56655 5555


Q ss_pred             cEEEeCCCCCC
Q 042434          505 TIRIWGPCQSS  515 (517)
Q Consensus       505 ~v~iw~~~~~~  515 (517)
                      -+.+|.+....
T Consensus       314 Gm~VFkleREr  324 (1202)
T KOG0292|consen  314 GMIVFKLERER  324 (1202)
T ss_pred             ceEEEEEcccC
Confidence            57788776443

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1e-30  Score=248.96  Aligned_cols=315  Identities=15%  Similarity=0.234  Sum_probs=249.4

Q ss_pred             cccCCCCCc--cccccCCCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEec
Q 042434          187 SCQYHNSSV--AISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLR  264 (517)
Q Consensus       187 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~  264 (517)
                      ...|||...  ..++..+.+..||.--..++..+.+|.++|..++|+|++.++++|+.|..|+||+..+.   +++.++.
T Consensus        14 glsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r---rclftL~   90 (1202)
T KOG0292|consen   14 GLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR---RCLFTLL   90 (1202)
T ss_pred             ceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc---eehhhhc
Confidence            345777655  66788888888888888999999999999999999999999999999999999999544   7778999


Q ss_pred             cCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCe
Q 042434          265 SHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNE  344 (517)
Q Consensus       265 ~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~  344 (517)
                      +|-+.|..+.|++.-.+|+|+|.|.+|+||+..+++++..+.+|...|.|..|+|....++++|-|.+  |.+||..|-.
T Consensus        91 GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQT--VRVWDisGLR  168 (1202)
T KOG0292|consen   91 GHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQT--VRVWDISGLR  168 (1202)
T ss_pred             cccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccce--EEEEeecchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999  6666664311


Q ss_pred             -----------------------------eEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce----EEeec
Q 042434          345 -----------------------------IKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA----ERVIS  391 (517)
Q Consensus       345 -----------------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~  391 (517)
                                                   ++....+|...|+-++|+|.-..+++|+.|..|++|.+...+    ....+
T Consensus       169 kk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrg  248 (1202)
T KOG0292|consen  169 KKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRG  248 (1202)
T ss_pred             ccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhc
Confidence                                         112223455678899999999999999999999999987765    45567


Q ss_pred             cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecC--
Q 042434          392 EEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRR--  469 (517)
Q Consensus       392 ~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~--  469 (517)
                      |-..|.++-|+|....+++.+.|+.|++||+... ..+..+......-+.+   +.+|..+++++|.+.| +.||.+.  
T Consensus       249 H~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR-t~v~tfrrendRFW~l---aahP~lNLfAAgHDsG-m~VFkleRE  323 (1202)
T KOG0292|consen  249 HYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR-TSVQTFRRENDRFWIL---AAHPELNLFAAGHDSG-MIVFKLERE  323 (1202)
T ss_pred             ccCCcceEEecCccceeEecCCCccEEEEecccc-cceeeeeccCCeEEEE---EecCCcceeeeecCCc-eEEEEEccc
Confidence            8899999999999999999999999999999776 5666665444443333   3378888888776544 3344443  


Q ss_pred             -------------------------CCc--eeEEecCC---CCCeeEEEecCCCCcEEEEeeCCC-cEEEeCC
Q 042434          470 -------------------------NSK--PIEILSGH---SMTVNCVSWNPKRPKMLASASDDH-TIRIWGP  511 (517)
Q Consensus       470 -------------------------~~~--~~~~~~~h---~~~v~~v~~~~~~~~~l~s~~~dg-~v~iw~~  511 (517)
                                               +.+  .+..++..   ..++.++.++|.....+++...|+ .--++.+
T Consensus       324 rpa~~v~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~i  396 (1202)
T KOG0292|consen  324 RPAYAVNGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQI  396 (1202)
T ss_pred             CceEEEcCCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEe
Confidence                                     211  11222221   257888999998744555444443 3334433

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.4e-30  Score=214.40  Aligned_cols=249  Identities=24%  Similarity=0.336  Sum_probs=201.5

Q ss_pred             ccEEEe-ccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeE
Q 042434          213 ETVQIL-TEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVL  291 (517)
Q Consensus       213 ~~~~~l-~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i  291 (517)
                      .+..++ .+|+..|.+++|+|.|++||+||.|.++.||.-. +..++.+.++.+|.+.|.|++|+++|++||+|+.|..|
T Consensus        51 ~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~-~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSV  129 (312)
T KOG0645|consen   51 TCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKE-DGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSV  129 (312)
T ss_pred             EEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecC-CCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeE
Confidence            344444 4799999999999999999999999999999875 45678899999999999999999999999999999999


Q ss_pred             EEEECCCC---cEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeC-CCCeeEeeeCcCCCceEEEEEccCCCE
Q 042434          292 KLWDVETG---ICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDC-DGNEIKAWRGTRIPKVLDLAVTPDGEN  367 (517)
Q Consensus       292 ~iwd~~~~---~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~  367 (517)
                      .||.+..+   ++...++.|...|..+.|+|...+|++++.|++|++|.-+. ..-........+...|-+++|++.|..
T Consensus       130 WiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~r  209 (312)
T KOG0645|consen  130 WIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSR  209 (312)
T ss_pred             EEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCce
Confidence            99998744   57888999999999999999999999999999976665553 223333333444458999999999999


Q ss_pred             EEEEeCCCcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-ccce-----EEeCcccCceE
Q 042434          368 LISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKW-EKPF-----KYTGHSQNKYV  441 (517)
Q Consensus       368 l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~-~~~~-----~~~~~~~~~~~  441 (517)
                      +++++.|++++||...+.  ....+..++..+.|.  ...+++++.|+.|++|.-.... .+..     .-..|..   .
T Consensus       210 l~s~sdD~tv~Iw~~~~~--~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~---d  282 (312)
T KOG0645|consen  210 LVSCSDDGTVSIWRLYTD--LSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEV---D  282 (312)
T ss_pred             EEEecCCcceEeeeeccC--cchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhccccc---c
Confidence            999999999999986532  233456678889998  5689999999999999875421 1111     1223333   4


Q ss_pred             EEeecCCCC-CcEEEEecCCCcEEEEecC
Q 042434          442 IRSCFGGLD-GTFIASGSENSQIYIWNRR  469 (517)
Q Consensus       442 i~~~~~s~~-~~~l~~~~~dg~i~iwd~~  469 (517)
                      +.++.|.|. .+.|++|+.||.|++|.+.
T Consensus       283 VNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  283 VNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             cceEEEcCCCCCceeecCCCceEEEEEec
Confidence            777777884 7899999999999999864

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.2e-31  Score=243.27  Aligned_cols=248  Identities=20%  Similarity=0.400  Sum_probs=220.9

Q ss_pred             EEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeC
Q 042434          261 HTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDC  340 (517)
Q Consensus       261 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~  340 (517)
                      +++..+...|.++.|+|...+++++-.+|.|.|||.++...++.+.-...+|.+..|-+..+.+++|+.|..|+|+.++.
T Consensus         7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt   86 (794)
T KOG0276|consen    7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT   86 (794)
T ss_pred             hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence            45566899999999999999999999999999999999999999999999999999999999999999999955555543


Q ss_pred             CCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce---EEeeccCCCeeEEEEcC-CCCEEEEEeCCCe
Q 042434          341 DGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA---ERVISEEHPITSLSVSV-DCKNFIVNLNSQE  416 (517)
Q Consensus       341 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~  416 (517)
                      - ..+..+..|. ..|.+++.+|...++++++.|-.|++||....-   ....+|.+-|.+++|.| |.+.+++++-|++
T Consensus        87 ~-ekV~~FeAH~-DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrT  164 (794)
T KOG0276|consen   87 G-EKVKTFEAHS-DYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRT  164 (794)
T ss_pred             c-eeeEEeeccc-cceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeecccc
Confidence            2 4455555544 699999999999999999999999999998754   66778999999999999 6788999999999


Q ss_pred             EEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcE
Q 042434          417 IHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKM  496 (517)
Q Consensus       417 i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~  496 (517)
                      |++|.+... .+..++.+|..++.++.... .+|..+|++|++|.+|+|||..+..++.++.||...|..+.|+|.-| +
T Consensus       165 VKVWslgs~-~~nfTl~gHekGVN~Vdyy~-~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lp-i  241 (794)
T KOG0276|consen  165 VKVWSLGSP-HPNFTLEGHEKGVNCVDYYT-GGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELP-I  241 (794)
T ss_pred             EEEEEcCCC-CCceeeeccccCcceEEecc-CCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCc-E
Confidence            999999776 88899999999877766544 55678999999999999999999999999999999999999999994 9


Q ss_pred             EEEeeCCCcEEEeCCCC
Q 042434          497 LASASDDHTIRIWGPCQ  513 (517)
Q Consensus       497 l~s~~~dg~v~iw~~~~  513 (517)
                      ++|||.||+||||+-.+
T Consensus       242 iisgsEDGTvriWhs~T  258 (794)
T KOG0276|consen  242 IISGSEDGTVRIWNSKT  258 (794)
T ss_pred             EEEecCCccEEEecCcc
Confidence            99999999999999765

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.3e-31  Score=213.79  Aligned_cols=246  Identities=18%  Similarity=0.282  Sum_probs=210.1

Q ss_pred             EEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEE
Q 042434          259 LKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMC  338 (517)
Q Consensus       259 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~  338 (517)
                      ....+..|.++|.++.|+-||++.++++.|.+|++|+...|.+++++.+|...|..++.+.|+..|++|+.|..  +..|
T Consensus         9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~--v~vw   86 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKA--VQVW   86 (307)
T ss_pred             hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCce--EEEE
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999  9999


Q ss_pred             eCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce----EEeeccCCCeeEEEEcCCCCEEEEEeCC
Q 042434          339 DCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA----ERVISEEHPITSLSVSVDCKNFIVNLNS  414 (517)
Q Consensus       339 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~~d  414 (517)
                      |..+..+..-...|.+.|+.+.|+.+...+++|+.|.++++||.++..    +........|.++.++  +..+++|+.|
T Consensus        87 DV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~D  164 (307)
T KOG0316|consen   87 DVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVD  164 (307)
T ss_pred             EcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccC
Confidence            998655544444455799999999999999999999999999999876    2222344567777665  4579999999


Q ss_pred             CeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCee--EEEecCC
Q 042434          415 QEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVN--CVSWNPK  492 (517)
Q Consensus       415 ~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~--~v~~~~~  492 (517)
                      |+++.||++.+ .....+.+++     ++++.+++|++..++++.|+++++.|-.+|+++..+++|.+.-.  ..+++..
T Consensus       165 GtvRtydiR~G-~l~sDy~g~p-----it~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qs  238 (307)
T KOG0316|consen  165 GTVRTYDIRKG-TLSSDYFGHP-----ITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQS  238 (307)
T ss_pred             CcEEEEEeecc-eeehhhcCCc-----ceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeeccc
Confidence            99999999887 4544555554     77778899999999999999999999999999999999976544  4456665


Q ss_pred             CCcEEEEeeCCCcEEEeCCCCCC
Q 042434          493 RPKMLASASDDHTIRIWGPCQSS  515 (517)
Q Consensus       493 ~~~~l~s~~~dg~v~iw~~~~~~  515 (517)
                      . ..+++||.||.|++||+..+.
T Consensus       239 d-thV~sgSEDG~Vy~wdLvd~~  260 (307)
T KOG0316|consen  239 D-THVFSGSEDGKVYFWDLVDET  260 (307)
T ss_pred             c-eeEEeccCCceEEEEEeccce
Confidence            5 689999999999999997664

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.98  E-value=3e-30  Score=222.44  Aligned_cols=279  Identities=17%  Similarity=0.262  Sum_probs=225.6

Q ss_pred             HHhccccccCCCCCc--cccccCCCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeee
Q 042434          181 VTSQIDSCQYHNSSV--AISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLT  258 (517)
Q Consensus       181 ~~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~  258 (517)
                      +.....++..+|...  +.+.-+|....|+.-.+.....+.+|++.|+|+.||.+|.+||||+.+|.|+||+..++..  
T Consensus        63 H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~--  140 (399)
T KOG0296|consen   63 HTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGE--  140 (399)
T ss_pred             cCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCce--
Confidence            444555666666443  4445555666778888889999999999999999999999999999999999999976643  


Q ss_pred             EEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEE
Q 042434          259 LKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMC  338 (517)
Q Consensus       259 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~  338 (517)
                       ...+...-+.+.-+.|+|.+..|++|+.||.+..|.+.++...+.+.+|..++++=.|.|+|+.++++..||+  |..|
T Consensus       141 -~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt--i~~W  217 (399)
T KOG0296|consen  141 -QWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT--IIVW  217 (399)
T ss_pred             -EEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce--EEEE
Confidence             3444445677888999999999999999999999999998888899999999999999999999999999999  7778


Q ss_pred             eCCCC-eeEeeeCc--------------------------------------------------CCC---ceEEEEEccC
Q 042434          339 DCDGN-EIKAWRGT--------------------------------------------------RIP---KVLDLAVTPD  364 (517)
Q Consensus       339 ~~~~~-~~~~~~~~--------------------------------------------------~~~---~i~~~~~~~~  364 (517)
                      ++.+. ++......                                                  +..   .|..+.++..
T Consensus       218 n~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~  297 (399)
T KOG0296|consen  218 NPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSK  297 (399)
T ss_pred             ecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccc
Confidence            87642 22222200                                                  000   1112222233


Q ss_pred             CCEEEEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEE
Q 042434          365 GENLISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIR  443 (517)
Q Consensus       365 ~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~  443 (517)
                      =.+.++|+-||+|.|||+.... .....|..+|..+.|-+ ..++++++.+|.|+.||.+++ .....+.+|...+.   
T Consensus       298 lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG-~l~~~y~GH~~~Il---  372 (399)
T KOG0296|consen  298 LPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTG-QLKFTYTGHQMGIL---  372 (399)
T ss_pred             cchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeeecccc-ceEEEEecCchhee---
Confidence            3467888999999999999887 66778889999999999 789999999999999999999 89999999998744   


Q ss_pred             eecCCCCCcEEEEecCCCcEEEEecC
Q 042434          444 SCFGGLDGTFIASGSENSQIYIWNRR  469 (517)
Q Consensus       444 ~~~~s~~~~~l~~~~~dg~i~iwd~~  469 (517)
                      ....+|++++++++|.|++.+||++.
T Consensus       373 ~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  373 DFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             EEEEcCCCcEEEEecCCCeEEEEecC
Confidence            44558999999999999999999864

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.98  E-value=6.1e-32  Score=232.53  Aligned_cols=288  Identities=18%  Similarity=0.233  Sum_probs=234.7

Q ss_pred             ccEEEeccccCcEEEEEECCCC-CEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeE
Q 042434          213 ETVQILTEHKNEVWFVQFSNNG-EYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVL  291 (517)
Q Consensus       213 ~~~~~l~~h~~~v~~~~~s~~~-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i  291 (517)
                      ..+..|.||.+.|.|++=+|+. ..+|+|+.||.|+|||+...   .+..++..|.+.|..|++..  ..++++|.|.+|
T Consensus        57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR---~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtv  131 (433)
T KOG0268|consen   57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR---ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTV  131 (433)
T ss_pred             cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhh---hhhheeecccCceeeEEecc--cceEEecCCcce
Confidence            3456678999999999999976 78999999999999999543   56688999999999999986  688999999999


Q ss_pred             EEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCC-CCeeEeeeCcCCCceEEEEEccCCC-EEE
Q 042434          292 KLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD-GNEIKAWRGTRIPKVLDLAVTPDGE-NLI  369 (517)
Q Consensus       292 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~-~l~  369 (517)
                      +.|.++. .+.+++ .....+..+.-+..+..+++++.+    |-+||.. ..++..+.-+. +.|.++.|+|... .|+
T Consensus       132 K~wk~~~-~p~~ti-lg~s~~~gIdh~~~~~~FaTcGe~----i~IWD~~R~~Pv~smswG~-Dti~svkfNpvETsILa  204 (433)
T KOG0268|consen  132 KQWKIDG-PPLHTI-LGKSVYLGIDHHRKNSVFATCGEQ----IDIWDEQRDNPVSSMSWGA-DSISSVKFNPVETSILA  204 (433)
T ss_pred             eeeeccC-Ccceee-eccccccccccccccccccccCce----eeecccccCCccceeecCC-CceeEEecCCCcchhee
Confidence            9999864 466666 345567777777778889999887    7788876 34444444433 4799999999766 566


Q ss_pred             EEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCC
Q 042434          370 SVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGG  448 (517)
Q Consensus       370 ~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s  448 (517)
                      +++.|+.|.+||+++.. ..........+.++|+|.+-.++++..|..++.||++....+...+.+|...   +..+.+|
T Consensus       205 s~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsA---V~dVdfs  281 (433)
T KOG0268|consen  205 SCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSA---VMDVDFS  281 (433)
T ss_pred             eeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhccccee---EEEeccC
Confidence            66799999999999987 4445556677899999988889999999999999999876777777777665   5566679


Q ss_pred             CCCcEEEEecCCCcEEEEecCCCceeEEecC-CCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434          449 LDGTFIASGSENSQIYIWNRRNSKPIEILSG-HSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSE  516 (517)
Q Consensus       449 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~  516 (517)
                      |.|+-+++||.|.+|+||.++.+.....+.. --..|.+|.|+-|. .+++|||+|+.|++|.....++
T Consensus       282 ptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Ds-kyi~SGSdd~nvRlWka~Asek  349 (433)
T KOG0268|consen  282 PTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDS-KYIISGSDDGNVRLWKAKASEK  349 (433)
T ss_pred             CCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccc-cEEEecCCCcceeeeecchhhh
Confidence            9999999999999999999987765444321 12579999999998 8999999999999999775543

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=2.4e-30  Score=212.39  Aligned_cols=279  Identities=20%  Similarity=0.323  Sum_probs=225.0

Q ss_pred             EEEEECC-CCCEEEEe-------eCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCC-CeEEEEeCCCeEEEEEC
Q 042434          226 WFVQFSN-NGEYLASS-------SSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDD-TKLLTCGNAEVLKLWDV  296 (517)
Q Consensus       226 ~~~~~s~-~~~~l~t~-------~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~  296 (517)
                      +++.||| -.++||.+       ...|++.|.++..+..+.....+. -.+.+..++|+++. +.+++++.||++++||.
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d-~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~   90 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYD-TEDGLFDVAWSENHENQVIAASGDGSLRLFDL   90 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeee-cccceeEeeecCCCcceEEEEecCceEEEecc
Confidence            5788999 23334332       236889999987555555555544 46789999999864 67889999999999996


Q ss_pred             CC-CcEEEEeCCCCCceEEEEEeC-CCCeEEEeeCCCceeEEEEeCC-CCeeEeeeCcCCCceEEEEEccC-CCEEEEEe
Q 042434          297 ET-GICKHTFGDHGFIVSSCAWFP-DSKRLVCGSSDTEKGIFMCDCD-GNEIKAWRGTRIPKVLDLAVTPD-GENLISVL  372 (517)
Q Consensus       297 ~~-~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~d~~v~i~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~  372 (517)
                      .. ..+++.++.|...|.++.|++ ++..+++++.|++  |.+|+.. .+.+.++.+ +...|....|+|. .+.+++++
T Consensus        91 ~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~T--iKLW~~~r~~Sv~Tf~g-h~~~Iy~a~~sp~~~nlfas~S  167 (311)
T KOG0277|consen   91 TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGT--IKLWDPNRPNSVQTFNG-HNSCIYQAAFSPHIPNLFASAS  167 (311)
T ss_pred             CCCCcchhHHHhhhhheEEeccccccceeEEeeccCCc--eEeecCCCCcceEeecC-CccEEEEEecCCCCCCeEEEcc
Confidence            43 357888999999999999998 4667888999999  7888876 455566665 4468999999995 67899999


Q ss_pred             CCCcEEEEECCCce--EEeeccCCCeeEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCC
Q 042434          373 SDKDIRILNLGTYA--ERVISEEHPITSLSVSV-DCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGL  449 (517)
Q Consensus       373 ~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~  449 (517)
                      .|+++++||++...  .....|...+.++.|+. +...+++++.|+.|+.||++.-..++..+.+|.-   .++.+.+||
T Consensus       168 gd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~---AVRkvk~Sp  244 (311)
T KOG0277|consen  168 GDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGL---AVRKVKFSP  244 (311)
T ss_pred             CCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCce---EEEEEecCc
Confidence            99999999998754  44556777899999998 5667888999999999999988777778877765   466666677


Q ss_pred             C-CcEEEEecCCCcEEEEecCCC-ceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCC
Q 042434          450 D-GTFIASGSENSQIYIWNRRNS-KPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGP  511 (517)
Q Consensus       450 ~-~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~  511 (517)
                      . ...|++++.|-+++|||...+ .++.+...|+.-|..+.|++..+..+|+++.|+.++||+.
T Consensus       245 h~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  245 HHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             chhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            5 468999999999999998854 4677777899999999999988889999999999999986

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.98  E-value=1.2e-29  Score=213.36  Aligned_cols=279  Identities=19%  Similarity=0.317  Sum_probs=224.9

Q ss_pred             EeccccCcEEEEEECC-CCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEE
Q 042434          217 ILTEHKNEVWFVQFSN-NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWD  295 (517)
Q Consensus       217 ~l~~h~~~v~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd  295 (517)
                      .-....+.|.+++||| ...++++||.||+||+|+++....... +....|.++|.+++|+.||..+++|+.|+.+++||
T Consensus        22 v~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wD  100 (347)
T KOG0647|consen   22 VPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWD  100 (347)
T ss_pred             cCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCceEEeeccCCceEEEE
Confidence            3345678999999999 556777899999999999986544333 55677999999999999999999999999999999


Q ss_pred             CCCCcEEEEeCCCCCceEEEEEeCCCC--eEEEeeCCCceeEEEEeCCCC-eeEeeeCcCCCceEEEEEccCCCEEEEEe
Q 042434          296 VETGICKHTFGDHGFIVSSCAWFPDSK--RLVCGSSDTEKGIFMCDCDGN-EIKAWRGTRIPKVLDLAVTPDGENLISVL  372 (517)
Q Consensus       296 ~~~~~~~~~~~~~~~~v~~i~~~~~~~--~l~~~~~d~~v~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  372 (517)
                      +.+++ ...+..|..+|.++.|-+...  .|++||.|.+  +..||++.. ++.......  .+.++..  -...++++.
T Consensus       101 L~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKT--lKfWD~R~~~pv~t~~LPe--RvYa~Dv--~~pm~vVat  173 (347)
T KOG0647|consen  101 LASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKT--LKFWDTRSSNPVATLQLPE--RVYAADV--LYPMAVVAT  173 (347)
T ss_pred             ccCCC-eeeeeecccceeEEEEecCCCcceeEecccccc--eeecccCCCCeeeeeeccc--eeeehhc--cCceeEEEe
Confidence            99995 556679999999999998665  8999999999  899998853 334443333  4555544  345888999


Q ss_pred             CCCcEEEEECCCceEEe----eccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC-CccceEEeCccc------CceE
Q 042434          373 SDKDIRILNLGTYAERV----ISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK-WEKPFKYTGHSQ------NKYV  441 (517)
Q Consensus       373 ~dg~i~i~d~~~~~~~~----~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~------~~~~  441 (517)
                      .+..|.+|+++......    ......+.+++..++....+.|+.+|.+.+..+... ....+.+..|..      .++.
T Consensus       174 a~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYa  253 (347)
T KOG0647|consen  174 AERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYA  253 (347)
T ss_pred             cCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEE
Confidence            99999999998765222    234456899999999999999999999999888653 244455666653      3788


Q ss_pred             EEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCC
Q 042434          442 IRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDD  503 (517)
Q Consensus       442 i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~d  503 (517)
                      +..+.|+|.-..|++++.||++.+||-.....+.+.+.|..+|++.+|+.+|..+..+.|.|
T Consensus       254 VNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYD  315 (347)
T KOG0647|consen  254 VNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYD  315 (347)
T ss_pred             ecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeecc
Confidence            99999999999999999999999999988888888889999999999999995344444544

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=2.5e-29  Score=243.07  Aligned_cols=282  Identities=20%  Similarity=0.311  Sum_probs=239.5

Q ss_pred             EEecc-ccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEE
Q 042434          216 QILTE-HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLW  294 (517)
Q Consensus       216 ~~l~~-h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw  294 (517)
                      ..+.+ |...+.|..|.  ..++++++.|++|++|+..++  ......+.+|.+.|.++++...+.++++|+.|.++++|
T Consensus       201 ~~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~--~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvW  276 (537)
T KOG0274|consen  201 KVLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNG--YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVW  276 (537)
T ss_pred             eeecccCcchhhhheee--cCeEEecCCCceeEEeecccc--eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeE
Confidence            44443 67788888888  568999999999999999654  23334499999999999998878899999999999999


Q ss_pred             ECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCC
Q 042434          295 DVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSD  374 (517)
Q Consensus       295 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  374 (517)
                      |..+|+|...+.+|...|.++...  +..+++|+.|.+  |.+|+..+.........+.+.|.++..+  +.++++|+.|
T Consensus       277 d~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~t--VkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d  350 (537)
T KOG0274|consen  277 DCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNT--VKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYD  350 (537)
T ss_pred             ecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCce--EEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecC
Confidence            999999999999999999998775  457888999999  7777777544444444366799999998  8899999999


Q ss_pred             CcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCc
Q 042434          375 KDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGT  452 (517)
Q Consensus       375 g~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  452 (517)
                      ++|++||+.+++  ....+|...|.++.+.+. ..+++|+.|+.|++||+++.......+.+|..-+..+     ...++
T Consensus       351 ~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l-----~~~~~  424 (537)
T KOG0274|consen  351 GTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSL-----LLRDN  424 (537)
T ss_pred             ceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccc-----ccccc
Confidence            999999999888  666779999999988776 8999999999999999988766777888887754222     34688


Q ss_pred             EEEEecCCCcEEEEecCCCceeEEecC-CCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434          453 FIASGSENSQIYIWNRRNSKPIEILSG-HSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSE  516 (517)
Q Consensus       453 ~l~~~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~  516 (517)
                      +|++++.||+|++||..+++++.++.+ |.+.|..+++.  . ..+++++.||.+++||+.+++.
T Consensus       425 ~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~-~~il~s~~~~~~~l~dl~~~~~  486 (537)
T KOG0274|consen  425 FLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--K-EEILCSSDDGSVKLWDLRSGTL  486 (537)
T ss_pred             eeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--c-ceEEEEecCCeeEEEecccCch
Confidence            999999999999999999999999998 67999999987  2 4688999999999999998875

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=2.9e-29  Score=232.44  Aligned_cols=247  Identities=30%  Similarity=0.414  Sum_probs=211.4

Q ss_pred             EEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeC
Q 042434          261 HTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDC  340 (517)
Q Consensus       261 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~  340 (517)
                      .++.+|.++|.+++|+|+++++++++.||.+++|++.+++....+..|...+..+.|+|+++.+++++.+|.  +.+|+.
T Consensus         3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~--i~i~~~   80 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKT--IRLWDL   80 (289)
T ss_pred             hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCe--EEEEEc
Confidence            456789999999999999999999999999999999999888888899999999999999999999999999  778887


Q ss_pred             CCC-eeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeE
Q 042434          341 DGN-EIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEI  417 (517)
Q Consensus       341 ~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i  417 (517)
                      ... ....+. .+...+.++.|+++++.+++++.+|.+.+||+.+..  .....+...+.++.|+|++.++++++.++.+
T Consensus        81 ~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i  159 (289)
T cd00200          81 ETGECVRTLT-GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTI  159 (289)
T ss_pred             CcccceEEEe-ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcE
Confidence            763 344444 344579999999998888888889999999998666  3333467789999999999888888889999


Q ss_pred             EEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEE
Q 042434          418 HMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKML  497 (517)
Q Consensus       418 ~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l  497 (517)
                      .+||++.. .....+..+...   +..+.++|+++.+++++.||.|++||+.+++.+..+..|...+.+++|+|++ .++
T Consensus       160 ~i~d~~~~-~~~~~~~~~~~~---i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~  234 (289)
T cd00200         160 KLWDLRTG-KCVATLTGHTGE---VNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDG-YLL  234 (289)
T ss_pred             EEEEcccc-ccceeEecCccc---cceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCC-cEE
Confidence            99999765 555556655543   5566678999999999999999999999999999998899999999999997 788


Q ss_pred             EEeeCCCcEEEeCCCCCC
Q 042434          498 ASASDDHTIRIWGPCQSS  515 (517)
Q Consensus       498 ~s~~~dg~v~iw~~~~~~  515 (517)
                      ++++.||.|++|++.+++
T Consensus       235 ~~~~~~~~i~i~~~~~~~  252 (289)
T cd00200         235 ASGSEDGTIRVWDLRTGE  252 (289)
T ss_pred             EEEcCCCcEEEEEcCCce
Confidence            888889999999998654

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=6.5e-30  Score=249.96  Aligned_cols=287  Identities=19%  Similarity=0.291  Sum_probs=231.8

Q ss_pred             cccCcEEEEEECCCCCEEEEee--CCCcEEEEEecCC--------C-eeeEEEEeccCCCCEEEEEECCCCCeEEEEeCC
Q 042434          220 EHKNEVWFVQFSNNGEYLASSS--SDCSAIIWKVLED--------S-KLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNA  288 (517)
Q Consensus       220 ~h~~~v~~~~~s~~~~~l~t~~--~dg~i~iw~~~~~--------~-~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d  288 (517)
                      .+...|.++..+|||..+|||+  .||.++||+.+.-        . -...+.+...|.+.|+|+.|+|||.+||+|+.|
T Consensus        11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD   90 (942)
T KOG0973|consen   11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD   90 (942)
T ss_pred             cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence            3455799999999999999999  8999999987421        1 123445667899999999999999999999999


Q ss_pred             CeEEEEECCC------------------CcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeC
Q 042434          289 EVLKLWDVET------------------GICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRG  350 (517)
Q Consensus       289 g~i~iwd~~~------------------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~  350 (517)
                      +.|.||+...                  -++...+.+|...|..++|+|++.++++++.|++  |.+|+..+-.......
T Consensus        91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~Dns--Viiwn~~tF~~~~vl~  168 (942)
T KOG0973|consen   91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNS--VIIWNAKTFELLKVLR  168 (942)
T ss_pred             ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccce--EEEEccccceeeeeee
Confidence            9999998762                  1356778899999999999999999999999999  8888887655444444


Q ss_pred             cCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEee-------ccCCCeeEEEEcCCCCEEEEEeC----CCeEE
Q 042434          351 TRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVI-------SEEHPITSLSVSVDCKNFIVNLN----SQEIH  418 (517)
Q Consensus       351 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~-------~~~~~i~~~~~s~~~~~l~~~~~----d~~i~  418 (517)
                      .|.+.|..+.|.|-|+++++-+.|++|++|++.+.. ...+       ........+.|||||.+|++...    ..++.
T Consensus       169 ~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~  248 (942)
T KOG0973|consen  169 GHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIA  248 (942)
T ss_pred             cccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeE
Confidence            555799999999999999999999999999977654 2211       12335788999999999998643    33677


Q ss_pred             EEEcCCCCccceEEeCcccCceEEEeecCCC------C-------C----cEEEEecCCCcEEEEecCCCceeEEecC-C
Q 042434          419 MWDVAGKWEKPFKYTGHSQNKYVIRSCFGGL------D-------G----TFIASGSENSQIYIWNRRNSKPIEILSG-H  480 (517)
Q Consensus       419 ~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~------~-------~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~-h  480 (517)
                      |.+- +.|.....+.||..+..++   .|+|      .       +    ..+|+|+.|++|.||.....+++..... .
T Consensus       249 IieR-~tWk~~~~LvGH~~p~evv---rFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf  324 (942)
T KOG0973|consen  249 IIER-GTWKVDKDLVGHSAPVEVV---RFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLF  324 (942)
T ss_pred             EEec-CCceeeeeeecCCCceEEE---EeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhh
Confidence            8875 5668888899999874443   3344      1       1    1688999999999999988888776642 3


Q ss_pred             CCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434          481 SMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ  513 (517)
Q Consensus       481 ~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~  513 (517)
                      ...|.+++|+||| ..|+.||.||+|.+..+..
T Consensus       325 ~~SI~DmsWspdG-~~LfacS~DGtV~~i~Fee  356 (942)
T KOG0973|consen  325 NKSIVDMSWSPDG-FSLFACSLDGTVALIHFEE  356 (942)
T ss_pred             cCceeeeeEcCCC-CeEEEEecCCeEEEEEcch
Confidence            5789999999999 7899999999999998865

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.97  E-value=6.9e-30  Score=214.72  Aligned_cols=250  Identities=16%  Similarity=0.292  Sum_probs=210.3

Q ss_pred             eEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECC-CCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEE
Q 042434          258 TLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVE-TGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIF  336 (517)
Q Consensus       258 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~  336 (517)
                      .+...+.+|.+.|..+.|+|+|..+|+|+.|..|.+|++. .-+-...+++|.+.|..+.|.+|++.+++++.|.+  +.
T Consensus        38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~--v~  115 (338)
T KOG0265|consen   38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKT--VR  115 (338)
T ss_pred             chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCce--EE
Confidence            3455678999999999999999999999999999999963 33445577899999999999999999999999999  99


Q ss_pred             EEeCCCCeeEeeeCcCCCceEEEEEccCCC-EEEEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCC
Q 042434          337 MCDCDGNEIKAWRGTRIPKVLDLAVTPDGE-NLISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNS  414 (517)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d  414 (517)
                      .||........-...+...+..+.-+.-|. .+.+++.|+++++||+++.. .........++++.|..++..+.+|+-|
T Consensus       116 ~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggId  195 (338)
T KOG0265|consen  116 GWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGID  195 (338)
T ss_pred             EEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeecccc
Confidence            999985544433334445778777555555 56688899999999999877 6666778899999999999999999999


Q ss_pred             CeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCC----ceeEEecCCC----CCeeE
Q 042434          415 QEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS----KPIEILSGHS----MTVNC  486 (517)
Q Consensus       415 ~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~h~----~~v~~  486 (517)
                      +.|++||++.. .....+.||...   |+.++.+++|.++.+-+.|.++++||++..    +++..+.+|.    .....
T Consensus       196 n~ikvWd~r~~-d~~~~lsGh~Dt---It~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~  271 (338)
T KOG0265|consen  196 NDIKVWDLRKN-DGLYTLSGHADT---ITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLK  271 (338)
T ss_pred             CceeeeccccC-cceEEeecccCc---eeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcce
Confidence            99999999887 778889999887   556666999999999999999999998753    4577777764    34567


Q ss_pred             EEecCCCCcEEEEeeCCCcEEEeCCCCC
Q 042434          487 VSWNPKRPKMLASASDDHTIRIWGPCQS  514 (517)
Q Consensus       487 v~~~~~~~~~l~s~~~dg~v~iw~~~~~  514 (517)
                      ++|+|++ ..+.+|+.|..+++||....
T Consensus       272 cswsp~~-~~i~ags~dr~vyvwd~~~r  298 (338)
T KOG0265|consen  272 CSWSPNG-TKITAGSADRFVYVWDTTSR  298 (338)
T ss_pred             eeccCCC-CccccccccceEEEeecccc
Confidence            8999999 78999999999999998764

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=1.3e-27  Score=193.01  Aligned_cols=292  Identities=20%  Similarity=0.306  Sum_probs=227.2

Q ss_pred             cccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCC------------CeeeEEEEeccCCCCEEEEEECCCC
Q 042434          212 TETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLED------------SKLTLKHTLRSHQNPVSFVAWSPDD  279 (517)
Q Consensus       212 ~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~------------~~~~~~~~~~~h~~~v~~l~~s~~~  279 (517)
                      ...+..+. ....|.+++|+|.|.+.|.|+...+.+|-....-            ......+.-+.|.+.|.|.+|+|+|
T Consensus        23 f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~g  101 (350)
T KOG0641|consen   23 FEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCG  101 (350)
T ss_pred             eEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCcc
Confidence            34455554 5778999999999999999999999998754211            0112233446789999999999999


Q ss_pred             CeEEEEeCCCeEEEEECCCCcEE-----EEeCCCCCceEEEEEeCC----CCeEEEeeCCCceeEEEEeCCC-CeeEeee
Q 042434          280 TKLLTCGNAEVLKLWDVETGICK-----HTFGDHGFIVSSCAWFPD----SKRLVCGSSDTEKGIFMCDCDG-NEIKAWR  349 (517)
Q Consensus       280 ~~l~s~~~dg~i~iwd~~~~~~~-----~~~~~~~~~v~~i~~~~~----~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~  349 (517)
                      .+|++|+.|.+|++.......+.     ..+..|.+.|..++|..+    +..+++++ .|..+||.-|... .....+.
T Consensus       102 eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~g-agdc~iy~tdc~~g~~~~a~s  180 (350)
T KOG0641|consen  102 ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAG-AGDCKIYITDCGRGQGFHALS  180 (350)
T ss_pred             CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecC-CCcceEEEeecCCCCcceeec
Confidence            99999999999999876544332     256678999999999764    33455543 3444589888874 4444444


Q ss_pred             CcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceE-Eee--------ccCCCeeEEEEcCCCCEEEEEeCCCeEEEE
Q 042434          350 GTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAE-RVI--------SEEHPITSLSVSVDCKNFIVNLNSQEIHMW  420 (517)
Q Consensus       350 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~--------~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~  420 (517)
                      + +.+.|.++ ++.+|-.+++|+.|.+|++||++-... ...        .....|.++++.|.|+.+++|-.|....+|
T Consensus       181 g-htghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~ly  258 (350)
T KOG0641|consen  181 G-HTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLY  258 (350)
T ss_pred             C-CcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEE
Confidence            4 44566654 566788999999999999999987652 111        123578999999999999999999999999


Q ss_pred             EcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCC----ceeEEecCCCCCeeEEEecCCCCcE
Q 042434          421 DVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS----KPIEILSGHSMTVNCVSWNPKRPKM  496 (517)
Q Consensus       421 d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~v~~~~~~~~~  496 (517)
                      |++++ ..++.+..|...   ++++.|+|...|+++++.|..|++-|+...    -++.....|...+..+.|+|.. .-
T Consensus       259 dirg~-r~iq~f~phsad---ir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d-~s  333 (350)
T KOG0641|consen  259 DIRGG-RMIQRFHPHSAD---IRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQD-FS  333 (350)
T ss_pred             EeeCC-ceeeeeCCCccc---eeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCcc-ce
Confidence            99988 888888888876   777888999999999999999999998632    1334445699999999999998 78


Q ss_pred             EEEeeCCCcEEEeCCC
Q 042434          497 LASASDDHTIRIWGPC  512 (517)
Q Consensus       497 l~s~~~dg~v~iw~~~  512 (517)
                      +++.+.|.++.+|-++
T Consensus       334 fisssadkt~tlwa~~  349 (350)
T KOG0641|consen  334 FISSSADKTATLWALN  349 (350)
T ss_pred             eeeccCcceEEEeccC
Confidence            8999999999999875

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=1.6e-28  Score=256.82  Aligned_cols=264  Identities=13%  Similarity=0.154  Sum_probs=208.1

Q ss_pred             CCcEEEEEecCCCeeeE--EEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCC----c----EEEEeCCCCCce
Q 042434          243 DCSAIIWKVLEDSKLTL--KHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETG----I----CKHTFGDHGFIV  312 (517)
Q Consensus       243 dg~i~iw~~~~~~~~~~--~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~----~----~~~~~~~~~~~v  312 (517)
                      +|.+++|+...-.....  ...+..|.+.|.+++|+|+++++|+|+.|+.|+||+..+.    .    ....+ .+...+
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v  535 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKL  535 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCce
Confidence            67788888743211111  1124458999999999999999999999999999997542    1    12233 235678


Q ss_pred             EEEEEeCC-CCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEcc-CCCEEEEEeCCCcEEEEECCCce-EEe
Q 042434          313 SSCAWFPD-SKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTP-DGENLISVLSDKDIRILNLGTYA-ERV  389 (517)
Q Consensus       313 ~~i~~~~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~-~~~  389 (517)
                      .+++|++. +.+|++++.||.  |.+||..+.........|.+.|.+++|+| ++.+|++|+.||.|++||++++. ...
T Consensus       536 ~~l~~~~~~~~~las~~~Dg~--v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~  613 (793)
T PLN00181        536 SGICWNSYIKSQVASSNFEGV--VQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGT  613 (793)
T ss_pred             eeEEeccCCCCEEEEEeCCCe--EEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEE
Confidence            99999874 789999999999  88888876554444445557899999997 78899999999999999998876 333


Q ss_pred             eccCCCeeEEEEc-CCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEec
Q 042434          390 ISEEHPITSLSVS-VDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNR  468 (517)
Q Consensus       390 ~~~~~~i~~~~~s-~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~  468 (517)
                      ......+.++.|+ +++..+++|+.||.|++||++........+.+|.....   .+.|. ++.++++++.|++|++||+
T Consensus       614 ~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~---~v~f~-~~~~lvs~s~D~~ikiWd~  689 (793)
T PLN00181        614 IKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVS---YVRFV-DSSTLVSSSTDNTLKLWDL  689 (793)
T ss_pred             EecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEE---EEEEe-CCCEEEEEECCCEEEEEeC
Confidence            3445678899995 57999999999999999999876445566777776643   44444 6789999999999999998


Q ss_pred             CC------CceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCC
Q 042434          469 RN------SKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQS  514 (517)
Q Consensus       469 ~~------~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~  514 (517)
                      ..      +.++.++.+|...++.++|+|++ .+|++|+.||.|++|+...+
T Consensus       690 ~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~-~~lasgs~D~~v~iw~~~~~  740 (793)
T PLN00181        690 SMSISGINETPLHSFMGHTNVKNFVGLSVSD-GYIATGSETNEVFVYHKAFP  740 (793)
T ss_pred             CCCccccCCcceEEEcCCCCCeeEEEEcCCC-CEEEEEeCCCEEEEEECCCC
Confidence            74      36788999999999999999999 79999999999999997654

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=3.7e-29  Score=222.07  Aligned_cols=292  Identities=20%  Similarity=0.252  Sum_probs=236.0

Q ss_pred             EEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeE--------------EEEe-ccCCCCEEEEEECCCC
Q 042434          215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTL--------------KHTL-RSHQNPVSFVAWSPDD  279 (517)
Q Consensus       215 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~--------------~~~~-~~h~~~v~~l~~s~~~  279 (517)
                      ...+..|.-+|.|++++|+.+++++++.||+|.=|++.++.....              ...- ..|...+.+++.++||
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            677888999999999999999999999999999999977653210              0111 3788899999999999


Q ss_pred             CeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEE
Q 042434          280 TKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDL  359 (517)
Q Consensus       280 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~  359 (517)
                      ++||+|+.|..|.||+.++.+.++.+.+|.+.|.+++|-.....+++++.|++  +.+|+.+..........|.+.|..+
T Consensus       215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drs--vkvw~~~~~s~vetlyGHqd~v~~I  292 (479)
T KOG0299|consen  215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRS--VKVWSIDQLSYVETLYGHQDGVLGI  292 (479)
T ss_pred             cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCc--eEEEehhHhHHHHHHhCCccceeee
Confidence            99999999999999999999999999999999999999999999999999999  7777776544444444445689999


Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEe-Cccc
Q 042434          360 AVTPDGENLISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYT-GHSQ  437 (517)
Q Consensus       360 ~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~  437 (517)
                      ....-++.+-+|+.|.++++|++.... .....+...+.|++|-.+ ..+++|+.+|.|.+|++... .++.... .|.-
T Consensus       293 daL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KK-kplf~~~~AHgv  370 (479)
T KOG0299|consen  293 DALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKK-KPLFTSRLAHGV  370 (479)
T ss_pred             chhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeeccc-CceeEeeccccc
Confidence            998888888889999999999996655 566677778999998755 68999999999999999765 3333322 2221


Q ss_pred             C--------ceEEEeecCCCCCcEEEEecCCCcEEEEecCCC----ceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCc
Q 042434          438 N--------KYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS----KPIEILSGHSMTVNCVSWNPKRPKMLASASDDHT  505 (517)
Q Consensus       438 ~--------~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~  505 (517)
                      .        ...+++++.-|...++++|+.+|.|++|-+..+    +++..++ -.+.|++++|+++|..+++..|....
T Consensus       371 ~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhR  449 (479)
T KOG0299|consen  371 IPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHR  449 (479)
T ss_pred             cCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEecccccc
Confidence            1        124666666889999999999999999998877    4566665 57899999999999556666666655


Q ss_pred             EEEeCC
Q 042434          506 IRIWGP  511 (517)
Q Consensus       506 v~iw~~  511 (517)
                      +-=|-.
T Consensus       450 lGRW~~  455 (479)
T KOG0299|consen  450 LGRWWC  455 (479)
T ss_pred             cceeeE
Confidence            555543

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=2.4e-28  Score=207.59  Aligned_cols=257  Identities=18%  Similarity=0.224  Sum_probs=216.2

Q ss_pred             eEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeC--CCceeE
Q 042434          258 TLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSS--DTEKGI  335 (517)
Q Consensus       258 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~--d~~v~i  335 (517)
                      ++.+.+....+.|.++.|+++|..+++++.|.++++||..+++.++++..++..+..+.|......++.++.  |.+  |
T Consensus         5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~t--I   82 (311)
T KOG1446|consen    5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDT--I   82 (311)
T ss_pred             ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCc--e
Confidence            334555556789999999999999999999999999999999999999888889999999988888888887  555  8


Q ss_pred             EEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCC
Q 042434          336 FMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQ  415 (517)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~  415 (517)
                      ...++..+.......+|...|.+++.+|-+..+++++.|++|++||++..+.....+...-..++|+|+|-.+|++...+
T Consensus        83 ryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~  162 (311)
T KOG1446|consen   83 RYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSE  162 (311)
T ss_pred             EEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCC
Confidence            88888877666666666679999999999999999999999999999987755555556667789999999999999988


Q ss_pred             eEEEEEcCCCCcc-ceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCe---eEEEecC
Q 042434          416 EIHMWDVAGKWEK-PFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTV---NCVSWNP  491 (517)
Q Consensus       416 ~i~~~d~~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v---~~v~~~~  491 (517)
                      .|++||++.-..- -..+.-..........+.|||||++++.++..+.+++.|.-+|....++.++...-   .+.+|+|
T Consensus       163 ~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftP  242 (311)
T KOG1446|consen  163 LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTP  242 (311)
T ss_pred             eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECC
Confidence            9999999865333 33333332334446677789999999999999999999999999999998775432   5788999


Q ss_pred             CCCcEEEEeeCCCcEEEeCCCCCCCC
Q 042434          492 KRPKMLASASDDHTIRIWGPCQSSEV  517 (517)
Q Consensus       492 ~~~~~l~s~~~dg~v~iw~~~~~~~v  517 (517)
                      ++ +++++|++||+|.+|++++|++|
T Consensus       243 ds-~Fvl~gs~dg~i~vw~~~tg~~v  267 (311)
T KOG1446|consen  243 DS-KFVLSGSDDGTIHVWNLETGKKV  267 (311)
T ss_pred             CC-cEEEEecCCCcEEEEEcCCCcEe
Confidence            99 79999999999999999998865

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.97  E-value=5.7e-31  Score=225.29  Aligned_cols=230  Identities=19%  Similarity=0.348  Sum_probs=198.0

Q ss_pred             CCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeE
Q 042434          267 QNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIK  346 (517)
Q Consensus       267 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~  346 (517)
                      ...|.|+.+.  ...+++|..|.+|+|||..+..+.+.+.+|++.|.|+.|.  .+.+++|+.|.+  |.+||.++....
T Consensus       197 skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsT--vrvWDv~tge~l  270 (499)
T KOG0281|consen  197 SKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDST--VRVWDVNTGEPL  270 (499)
T ss_pred             CCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCce--EEEEeccCCchh
Confidence            5678999884  6689999999999999999999999999999999999985  669999999999  666776655444


Q ss_pred             eeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-----EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEE
Q 042434          347 AWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-----ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWD  421 (517)
Q Consensus       347 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d  421 (517)
                      ....+|...|..+.|+.  .++++++.|.++.+||+.+..     ....+|...|+.+.|+.  +++++++.|.+|++|+
T Consensus       271 ~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikvW~  346 (499)
T KOG0281|consen  271 NTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWS  346 (499)
T ss_pred             hHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecCCceEEEEe
Confidence            44445556899998874  599999999999999998766     34557888899988864  5999999999999999


Q ss_pred             cCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEee
Q 042434          422 VAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS  501 (517)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~  501 (517)
                      +.+. ..+..+.+|..+   |.|+  ...|+++++|+.|.+|++||+..|.++..+.||+.-|.++.|..   ..+++|+
T Consensus       347 ~st~-efvRtl~gHkRG---IACl--QYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~---krIVSGa  417 (499)
T KOG0281|consen  347 TSTC-EFVRTLNGHKRG---IACL--QYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN---KRIVSGA  417 (499)
T ss_pred             ccce-eeehhhhccccc---ceeh--hccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecC---ceeeecc
Confidence            9888 888889999877   4444  35899999999999999999999999999999999999999974   4699999


Q ss_pred             CCCcEEEeCCCCCC
Q 042434          502 DDHTIRIWGPCQSS  515 (517)
Q Consensus       502 ~dg~v~iw~~~~~~  515 (517)
                      .||+|+|||+..+.
T Consensus       418 YDGkikvWdl~aal  431 (499)
T KOG0281|consen  418 YDGKIKVWDLQAAL  431 (499)
T ss_pred             ccceEEEEeccccc
Confidence            99999999998754

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=6.8e-29  Score=230.86  Aligned_cols=271  Identities=22%  Similarity=0.286  Sum_probs=221.3

Q ss_pred             EEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeC
Q 042434          227 FVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFG  306 (517)
Q Consensus       227 ~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  306 (517)
                      -+.|+ ..+.||.|.. ..|++|+..++.. .  .....+.+.|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.
T Consensus       182 lldWs-s~n~laValg-~~vylW~~~s~~v-~--~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~  256 (484)
T KOG0305|consen  182 LLDWS-SANVLAVALG-QSVYLWSASSGSV-T--ELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLR  256 (484)
T ss_pred             Hhhcc-cCCeEEEEec-ceEEEEecCCCce-E--EeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccccccc
Confidence            35677 4456777654 5799999876642 2  2223348999999999999999999999999999999999999998


Q ss_pred             C-CCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC--CeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECC
Q 042434          307 D-HGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG--NEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLG  383 (517)
Q Consensus       307 ~-~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  383 (517)
                      . |...|.+++|.  +..+.+|+.++.  |..+|.+.  .... ...+|...|..+.|++|+.++++|+.|+.+.|||..
T Consensus       257 ~~h~~rvg~laW~--~~~lssGsr~~~--I~~~dvR~~~~~~~-~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~  331 (484)
T KOG0305|consen  257 GSHASRVGSLAWN--SSVLSSGSRDGK--ILNHDVRISQHVVS-TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGL  331 (484)
T ss_pred             CCcCceeEEEecc--CceEEEecCCCc--EEEEEEecchhhhh-hhhcccceeeeeEECCCCCeeccCCCccceEeccCC
Confidence            8 99999999998  778999999999  66666553  3333 345555689999999999999999999999999996


Q ss_pred             Cce--EEeeccCCCeeEEEEcC-CCCEEEEEe--CCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEE--
Q 042434          384 TYA--ERVISEEHPITSLSVSV-DCKNFIVNL--NSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIAS--  456 (517)
Q Consensus       384 ~~~--~~~~~~~~~i~~~~~s~-~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~--  456 (517)
                      ...  .....|...|..++|+| ....||+|+  .|++|++||..++ ..+.......    .|..+.|++..+-|++  
T Consensus       332 ~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g-~~i~~vdtgs----QVcsL~Wsk~~kEi~sth  406 (484)
T KOG0305|consen  332 SPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG-ARIDSVDTGS----QVCSLIWSKKYKELLSTH  406 (484)
T ss_pred             CccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC-cEecccccCC----ceeeEEEcCCCCEEEEec
Confidence            655  77788999999999999 456677764  4899999999876 3333333222    3777778888866665  


Q ss_pred             ecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434          457 GSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ  513 (517)
Q Consensus       457 ~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~  513 (517)
                      |..++.|.||+..+.+++..+.+|...|..++++||| ..+++|+.|.++++|++-.
T Consensus       407 G~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg-~~i~t~a~DETlrfw~~f~  462 (484)
T KOG0305|consen  407 GYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDG-ETIVTGAADETLRFWNLFD  462 (484)
T ss_pred             CCCCCcEEEEeccccceeeeecCCcceeEEEEECCCC-CEEEEecccCcEEeccccC
Confidence            4456789999999999999999999999999999999 7999999999999999865

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.97  E-value=1.2e-30  Score=232.92  Aligned_cols=251  Identities=19%  Similarity=0.267  Sum_probs=211.2

Q ss_pred             eEEEEeccCCCCEEEEEECC-CCCeEEEEeCCCeEEEEECCC-CcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeE
Q 042434          258 TLKHTLRSHQNPVSFVAWSP-DDTKLLTCGNAEVLKLWDVET-GICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGI  335 (517)
Q Consensus       258 ~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i  335 (517)
                      ..+.++.+|+..|+++.|.| .+.+|++++.|+.|+||++-. +.++++|.+|..+|..++|+++|..|++++.|+.  +
T Consensus       205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~--l  282 (503)
T KOG0282|consen  205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRF--L  282 (503)
T ss_pred             hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeeccee--e
Confidence            45678899999999999999 889999999999999999976 8999999999999999999999999999999999  8


Q ss_pred             EEEeCCCC-eeEeeeCcCCCceEEEEEccCC-CEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEE
Q 042434          336 FMCDCDGN-EIKAWRGTRIPKVLDLAVTPDG-ENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVN  411 (517)
Q Consensus       336 ~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~  411 (517)
                      .+||..+. +...+....  .+.|+.|.|++ +.+++|+.|+.|+.||+++++  ...-.|...+..+.|-++|+.++++
T Consensus       283 KlwDtETG~~~~~f~~~~--~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFiss  360 (503)
T KOG0282|consen  283 KLWDTETGQVLSRFHLDK--VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISS  360 (503)
T ss_pred             eeeccccceEEEEEecCC--CceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeee
Confidence            99999854 445555554  68999999998 789999999999999999998  4455677899999999999999999


Q ss_pred             eCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCC---ceeEEecCCC--CCeeE
Q 042434          412 LNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS---KPIEILSGHS--MTVNC  486 (517)
Q Consensus       412 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~h~--~~v~~  486 (517)
                      +.|+.+++|+.+.............   ..+.++..+|+++++++-+.|..|.+|.+...   ..-..+.+|.  +.-..
T Consensus       361 SDdks~riWe~~~~v~ik~i~~~~~---hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~  437 (503)
T KOG0282|consen  361 SDDKSVRIWENRIPVPIKNIADPEM---HTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQ  437 (503)
T ss_pred             ccCccEEEEEcCCCccchhhcchhh---ccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceee
Confidence            9999999999876522222222222   22445666999999999999999999986543   2344567774  56678


Q ss_pred             EEecCCCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434          487 VSWNPKRPKMLASASDDHTIRIWGPCQSSE  516 (517)
Q Consensus       487 v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~  516 (517)
                      +.||||| .+|++|+.||.+.+||.++-+.
T Consensus       438 v~fSpDG-~~l~SGdsdG~v~~wdwkt~kl  466 (503)
T KOG0282|consen  438 VDFSPDG-RTLCSGDSDGKVNFWDWKTTKL  466 (503)
T ss_pred             EEEcCCC-CeEEeecCCccEEEeechhhhh
Confidence            9999999 7999999999999999987543

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.6e-28  Score=207.97  Aligned_cols=267  Identities=19%  Similarity=0.268  Sum_probs=214.0

Q ss_pred             EEEeeCCCcEEEEEecCCC---------eeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCC
Q 042434          237 LASSSSDCSAIIWKVLEDS---------KLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGD  307 (517)
Q Consensus       237 l~t~~~dg~i~iw~~~~~~---------~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  307 (517)
                      +++|+....|.-+++....         .+.+...+..|.++|++++.+  +.++|+||.|-+|+|||+.+...+..+-.
T Consensus         4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~   81 (362)
T KOG0294|consen    4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLS   81 (362)
T ss_pred             EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceec
Confidence            5667777666666553222         123456678899999999986  89999999999999999999998988889


Q ss_pred             CCCceEEEEEeCCCC--eEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCc
Q 042434          308 HGFIVSSCAWFPDSK--RLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTY  385 (517)
Q Consensus       308 ~~~~v~~i~~~~~~~--~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  385 (517)
                      |.+.|+++.|.++-.  .|++|+.||.  |.+|+...-........|.+.|+.++++|.++..++.+.|+.++.||+-.+
T Consensus        82 HagsitaL~F~~~~S~shLlS~sdDG~--i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~G  159 (362)
T KOG0294|consen   82 HAGSITALKFYPPLSKSHLLSGSDDGH--IIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRG  159 (362)
T ss_pred             cccceEEEEecCCcchhheeeecCCCc--EEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcC
Confidence            999999999999765  8999999999  888898876665555566668999999999999999999999999999887


Q ss_pred             e-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEE
Q 042434          386 A-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIY  464 (517)
Q Consensus       386 ~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~  464 (517)
                      + ..........+.+.|+|.|.+++++..++ |-+|.+.+. ......... ..   +.++. .-++..+++|++|+.|.
T Consensus       160 r~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A-~v~~~i~~~-~r---~l~~~-~l~~~~L~vG~d~~~i~  232 (362)
T KOG0294|consen  160 RVAFVLNLKNKATLVSWSPQGDHFVVSGRNK-IDIYQLDNA-SVFREIENP-KR---ILCAT-FLDGSELLVGGDNEWIS  232 (362)
T ss_pred             ccceeeccCCcceeeEEcCCCCEEEEEeccE-EEEEecccH-hHhhhhhcc-cc---ceeee-ecCCceEEEecCCceEE
Confidence            7 44444555566799999999999887654 788887653 222221111 11   11222 24688999999999999


Q ss_pred             EEecCCCceeEEecCCCCCeeEEEe--cCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434          465 IWNRRNSKPIEILSGHSMTVNCVSW--NPKRPKMLASASDDHTIRIWGPCQSS  515 (517)
Q Consensus       465 iwd~~~~~~~~~~~~h~~~v~~v~~--~~~~~~~l~s~~~dg~v~iw~~~~~~  515 (517)
                      +||..+..+...+.+|...|.++.+  .|++ .+|+|+|.||.|+|||++...
T Consensus       233 ~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~-~~lvTaSSDG~I~vWd~~~~~  284 (362)
T KOG0294|consen  233 LKDTDSDTPLTEFLAHENRVKDIASYTNPEH-EYLVTASSDGFIKVWDIDMET  284 (362)
T ss_pred             EeccCCCccceeeecchhheeeeEEEecCCc-eEEEEeccCceEEEEEccccc
Confidence            9999999999999999999999984  4566 799999999999999998763

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=5.4e-28  Score=233.76  Aligned_cols=269  Identities=16%  Similarity=0.124  Sum_probs=202.0

Q ss_pred             ccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCee----------eEEEEeccCCCCEEEEEECC-CCCeEEEEeCCC
Q 042434          221 HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKL----------TLKHTLRSHQNPVSFVAWSP-DDTKLLTCGNAE  289 (517)
Q Consensus       221 h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~----------~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg  289 (517)
                      |-..|.....++++..+++++.+.....|+...+...          .....+.+|.+.|.+++|+| ++++|++|+.||
T Consensus        19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg   98 (493)
T PTZ00421         19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG   98 (493)
T ss_pred             ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence            4455666667777666777777777777765332110          11124678999999999999 889999999999


Q ss_pred             eEEEEECCCC-------cEEEEeCCCCCceEEEEEeCCC-CeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEE
Q 042434          290 VLKLWDVETG-------ICKHTFGDHGFIVSSCAWFPDS-KRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAV  361 (517)
Q Consensus       290 ~i~iwd~~~~-------~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~  361 (517)
                      +|++||+.++       .++..+.+|...|.+++|+|++ ++|++++.|+.  |.+||............+...|.+++|
T Consensus        99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt--VrIWDl~tg~~~~~l~~h~~~V~sla~  176 (493)
T PTZ00421         99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV--VNVWDVERGKAVEVIKCHSDQITSLEW  176 (493)
T ss_pred             EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE--EEEEECCCCeEEEEEcCCCCceEEEEE
Confidence            9999999765       3567788999999999999985 68999999999  888888755444333445568999999


Q ss_pred             ccCCCEEEEEeCCCcEEEEECCCceE--EeeccCCC-eeEEEEcCCCCEEEEEe----CCCeEEEEEcCCCCccceEEeC
Q 042434          362 TPDGENLISVLSDKDIRILNLGTYAE--RVISEEHP-ITSLSVSVDCKNFIVNL----NSQEIHMWDVAGKWEKPFKYTG  434 (517)
Q Consensus       362 ~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~-i~~~~~s~~~~~l~~~~----~d~~i~~~d~~~~~~~~~~~~~  434 (517)
                      +|+|..+++++.|+.|++||++++..  ....|... ...+.|.+++..+++++    .|+.|++||++...........
T Consensus       177 spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~  256 (493)
T PTZ00421        177 NLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDL  256 (493)
T ss_pred             ECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEecc
Confidence            99999999999999999999998772  23344433 45678899888877654    4789999999875333333322


Q ss_pred             cccCceEEEeecCCCCCcEEEEec-CCCcEEEEecCCCceeEEecC-CCCCeeEEEecCCC
Q 042434          435 HSQNKYVIRSCFGGLDGTFIASGS-ENSQIYIWNRRNSKPIEILSG-HSMTVNCVSWNPKR  493 (517)
Q Consensus       435 ~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~-h~~~v~~v~~~~~~  493 (517)
                      +..  ..+...+++++++++++|+ .||.|++||+.+++++..... +..++.+++|.|..
T Consensus       257 d~~--~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~  315 (493)
T PTZ00421        257 DQS--SALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW  315 (493)
T ss_pred             CCC--CceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence            222  1234455689999999887 599999999999988776643 45678899998864

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=9.9e-29  Score=221.05  Aligned_cols=280  Identities=15%  Similarity=0.186  Sum_probs=231.1

Q ss_pred             ccCcEEEEEECCCCC-EEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCC
Q 042434          221 HKNEVWFVQFSNNGE-YLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETG  299 (517)
Q Consensus       221 h~~~v~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~  299 (517)
                      ..+.|.+++|||... -+|+.+. -.+.||+..+.   ...+++......|.+++|-.||+++++|...|.|+|+|..+.
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~---~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r  100 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTR---SVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR  100 (487)
T ss_pred             ccCcceeEecCCCCCCceEEecc-cEEEEEecchh---hhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccH
Confidence            457899999999443 3444433 47899987544   344556667889999999999999999999999999998777


Q ss_pred             cEEEEeCCCCCceEEEEEeCCCCe-EEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCC-EEEEEeCCCcE
Q 042434          300 ICKHTFGDHGFIVSSCAWFPDSKR-LVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGE-NLISVLSDKDI  377 (517)
Q Consensus       300 ~~~~~~~~~~~~v~~i~~~~~~~~-l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i  377 (517)
                      ..++.+..|..++..+.|+|+++. +++|+.|+.  +..||..+..+......|.+.|.+.+|+|-.. .+++|+.||.|
T Consensus       101 ~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v--~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~v  178 (487)
T KOG0310|consen  101 VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKV--VKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKV  178 (487)
T ss_pred             HHHHHHhhccCceeEEEecccCCeEEEecCCCce--EEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceE
Confidence            778889999999999999997655 555666666  77888888777656666778999999999755 78999999999


Q ss_pred             EEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEE
Q 042434          378 RILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIA  455 (517)
Q Consensus       378 ~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  455 (517)
                      ++||++...  ...+.|+.+|..+.+-|.|..+++++ .+.+++||+.++.+.+.....|...   ++|+.+..++..|+
T Consensus       179 rl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~Kt---VTcL~l~s~~~rLl  254 (487)
T KOG0310|consen  179 RLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKT---VTCLRLASDSTRLL  254 (487)
T ss_pred             EEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccce---EEEEEeecCCceEe
Confidence            999999874  77788999999999999999888876 4579999998766776666666665   55666677899999


Q ss_pred             EecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCC
Q 042434          456 SGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPC  512 (517)
Q Consensus       456 ~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~  512 (517)
                      +|+-||.+++||+.+.+.+..+. -.++|.+++.+|++ ..++.|..||.+.+=+..
T Consensus       255 S~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd-~t~viGmsnGlv~~rr~~  309 (487)
T KOG0310|consen  255 SGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDD-QTVVIGMSNGLVSIRRRE  309 (487)
T ss_pred             ecccccceEEEEccceEEEEeee-cccceeeEEecCCC-ceEEEecccceeeeehhh
Confidence            99999999999999999999887 57899999999998 789999999988776443

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=6.5e-29  Score=215.23  Aligned_cols=243  Identities=22%  Similarity=0.298  Sum_probs=203.2

Q ss_pred             ccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCC---eEEEeeCCCceeEEEEeC
Q 042434          264 RSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSK---RLVCGSSDTEKGIFMCDC  340 (517)
Q Consensus       264 ~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~---~l~~~~~d~~v~i~~~~~  340 (517)
                      ..|.+.|.++...  +++|++|++||.+++||. .|++...+.+|.++|.+++|.....   .|++++.|.++++|.|+.
T Consensus       102 ~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~  178 (423)
T KOG0313|consen  102 FLHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV  178 (423)
T ss_pred             ccchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence            3488889988887  779999999999999996 6889999999999999988865443   599999999998999988


Q ss_pred             CCCeeEeeeC--cCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCc---------------------------eEEeec
Q 042434          341 DGNEIKAWRG--TRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTY---------------------------AERVIS  391 (517)
Q Consensus       341 ~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---------------------------~~~~~~  391 (517)
                      ..........  +|...|.++...++|..+++|+.|..|.+|+..+.                           .....+
T Consensus       179 ~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G  258 (423)
T KOG0313|consen  179 GENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG  258 (423)
T ss_pred             chhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc
Confidence            7655443332  66679999999999999999999999999993210                           023346


Q ss_pred             cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCC
Q 042434          392 EEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS  471 (517)
Q Consensus       392 ~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  471 (517)
                      |..+|.++.|++ ...+++++.|.+|+.||+.++ .....+.+..    .+.++..+|..++|++|+.|..|++||.+++
T Consensus       259 Ht~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg-~~~~~~~~~k----sl~~i~~~~~~~Ll~~gssdr~irl~DPR~~  332 (423)
T KOG0313|consen  259 HTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETG-GLKSTLTTNK----SLNCISYSPLSKLLASGSSDRHIRLWDPRTG  332 (423)
T ss_pred             cccceeeEEEcC-CCceEeecccceEEEEEeecc-cceeeeecCc----ceeEeecccccceeeecCCCCceeecCCCCC
Confidence            778999999998 678999999999999999887 3333333322    3666667899999999999999999999876


Q ss_pred             c---eeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434          472 K---PIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS  515 (517)
Q Consensus       472 ~---~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~  515 (517)
                      .   ...++.+|.+.|.++.|+|....+|++++.|+++++||+++.+
T Consensus       333 ~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k  379 (423)
T KOG0313|consen  333 DGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK  379 (423)
T ss_pred             CCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence            4   5678889999999999999998999999999999999999866

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=2.3e-28  Score=206.80  Aligned_cols=294  Identities=22%  Similarity=0.363  Sum_probs=220.3

Q ss_pred             CCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCC
Q 042434          209 QIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNA  288 (517)
Q Consensus       209 ~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d  288 (517)
                      ..|.+...++....  -.|+.||+.|.+||+|+.||.|.|||+.+-   ..-+.+.+|..+|++++||+||+.|+++|.|
T Consensus        12 ~~PEel~~tld~~~--a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~---~iar~lsaH~~pi~sl~WS~dgr~LltsS~D   86 (405)
T KOG1273|consen   12 EYPEELTHTLDNPL--AECCQFSRWGDYLAVGCANGRVVIYDFDTF---RIARMLSAHVRPITSLCWSRDGRKLLTSSRD   86 (405)
T ss_pred             cChHhhceeccCCc--cceEEeccCcceeeeeccCCcEEEEEcccc---chhhhhhccccceeEEEecCCCCEeeeecCC
Confidence            45556666665322  789999999999999999999999999654   4567889999999999999999999999999


Q ss_pred             CeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCC-eEEEeeCCCceeEEEEeCCCCeeEeeeCcCC----CceEEEEEcc
Q 042434          289 EVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSK-RLVCGSSDTEKGIFMCDCDGNEIKAWRGTRI----PKVLDLAVTP  363 (517)
Q Consensus       289 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~----~~i~~~~~~~  363 (517)
                      ..|.+||+..|.+++.+ ....+|+.+.|+|... .+++.-.+..-.+..++..  .-..+.....    ....+..|.+
T Consensus        87 ~si~lwDl~~gs~l~ri-rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~--~h~~Lp~d~d~dln~sas~~~fdr  163 (405)
T KOG1273|consen   87 WSIKLWDLLKGSPLKRI-RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP--KHSVLPKDDDGDLNSSASHGVFDR  163 (405)
T ss_pred             ceeEEEeccCCCceeEE-EccCccceeeeccccCCeEEEEEecCCcEEEEecCC--ceeeccCCCccccccccccccccC
Confidence            99999999999999888 6778999999999543 3333333433223333321  1111111111    1122346889


Q ss_pred             CCCEEEEEeCCCcEEEEECCCceE--E-eeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc--------cceEE
Q 042434          364 DGENLISVLSDKDIRILNLGTYAE--R-VISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWE--------KPFKY  432 (517)
Q Consensus       364 ~~~~l~~~~~dg~i~i~d~~~~~~--~-~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~--------~~~~~  432 (517)
                      .|+++++|...|.+.++|..+.+.  . .......|..+.++..|+.++..+.|..|+.|+++.-..        ...++
T Consensus       164 ~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~  243 (405)
T KOG1273|consen  164 RGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKL  243 (405)
T ss_pred             CCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHH
Confidence            999999999999999999998771  1 222246788999999999999999999999999863111        11111


Q ss_pred             eCcccCceEEEeecCCCCCcEEEEecCC-CcEEEEecCCCceeEEecCCC-CCeeEEEecCCCCcEEEEeeCCCcEEEeC
Q 042434          433 TGHSQNKYVIRSCFGGLDGTFIASGSEN-SQIYIWNRRNSKPIEILSGHS-MTVNCVSWNPKRPKMLASASDDHTIRIWG  510 (517)
Q Consensus       433 ~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~h~-~~v~~v~~~~~~~~~l~s~~~dg~v~iw~  510 (517)
                      .... +......|+|+.+|.|+++|+.. ..++||....|.+++.+.|.. ....++.|+|-.+ .+++. ..|.|+||.
T Consensus       244 qDvV-Nk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp-~i~si-~sg~v~iw~  320 (405)
T KOG1273|consen  244 QDVV-NKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRP-IIASI-ASGVVYIWA  320 (405)
T ss_pred             HHHH-hhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeeccccccee-eeeec-cCCceEEEE
Confidence            1111 22335567778999999988754 579999999999999999887 5678999999984 66666 789999998


Q ss_pred             CCC
Q 042434          511 PCQ  513 (517)
Q Consensus       511 ~~~  513 (517)
                      ...
T Consensus       321 ~~~  323 (405)
T KOG1273|consen  321 VVQ  323 (405)
T ss_pred             eec
Confidence            754

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3e-28  Score=206.29  Aligned_cols=293  Identities=18%  Similarity=0.327  Sum_probs=241.4

Q ss_pred             cccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeE
Q 042434          212 TETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVL  291 (517)
Q Consensus       212 ~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i  291 (517)
                      ...++.+.||++.|+.++.......+.+++.|.+.+||.++++   .++.++.+|.+.|.++.|++.+.++++++.|++.
T Consensus       138 ~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg---~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~ta  214 (481)
T KOG0300|consen  138 FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESG---ACLATYTGHTGSVNSIKFHNSGLLLLTASGDETA  214 (481)
T ss_pred             EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccc---cceeeecccccceeeEEeccccceEEEccCCcch
Confidence            4567789999999999999888889999999999999999877   5668899999999999999999999999999999


Q ss_pred             EEEEC------CC------------------------------C----cEEEEeCCCCCceEEEEEeCCCCeEEEeeCCC
Q 042434          292 KLWDV------ET------------------------------G----ICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDT  331 (517)
Q Consensus       292 ~iwd~------~~------------------------------~----~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~  331 (517)
                      .||..      ..                              +    .++..+.+|...|.+..|...|+.+++++.|.
T Consensus       215 HIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDR  294 (481)
T KOG0300|consen  215 HIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDR  294 (481)
T ss_pred             HHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccc
Confidence            99962      10                              0    12345678999999999999999999999999


Q ss_pred             ceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce---EEeeccCCCeeEEEEcCCCCEE
Q 042434          332 EKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA---ERVISEEHPITSLSVSVDCKNF  408 (517)
Q Consensus       332 ~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~s~~~~~l  408 (517)
                      +  ..+||.....+.....+|....+.++-+|..+++++.+.|.+.++||++..-   ..+.+|...|++..|..+. .+
T Consensus       295 T--AnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~v  371 (481)
T KOG0300|consen  295 T--ANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RV  371 (481)
T ss_pred             c--ceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ce
Confidence            9  8888998777766666666789999999999999999999999999998544   4566788899999998764 68


Q ss_pred             EEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEe-----cCCCCC
Q 042434          409 IVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEIL-----SGHSMT  483 (517)
Q Consensus       409 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~h~~~  483 (517)
                      ++|+.|.+|++||+++...+...+.....    +.-+..+..+..|+.-..+..|++||+...+ +..+     ++|...
T Consensus       372 VSgSDDrTvKvWdLrNMRsplATIRtdS~----~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R-laRlPrtsRqgHrRM  446 (481)
T KOG0300|consen  372 VSGSDDRTVKVWDLRNMRSPLATIRTDSP----ANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR-LARLPRTSRQGHRRM  446 (481)
T ss_pred             eecCCCceEEEeeeccccCcceeeecCCc----cceeEeecCCceEEeccCCceEEEEecCCCc-cccCCccccccccee
Confidence            89999999999999887566655554333    2222335566788888889999999987544 3333     479999


Q ss_pred             eeEEEecCCCC-cEEEEeeCCCcEEEeCCCCCC
Q 042434          484 VNCVSWNPKRP-KMLASASDDHTIRIWGPCQSS  515 (517)
Q Consensus       484 v~~v~~~~~~~-~~l~s~~~dg~v~iw~~~~~~  515 (517)
                      |+|++|..+.+ .-|++||.|..+.-|++...+
T Consensus       447 V~c~AW~eehp~cnLftcGFDR~v~gW~in~p~  479 (481)
T KOG0300|consen  447 VTCCAWLEEHPACNLFTCGFDRMVAGWKINTPT  479 (481)
T ss_pred             eeeeeccccCcccccccccccceeeeeEecccC
Confidence            99999976542 247899999999999998764

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=3.3e-28  Score=201.26  Aligned_cols=286  Identities=17%  Similarity=0.247  Sum_probs=230.4

Q ss_pred             HHHHHHHhccccccCCCCCc-cccccCCCcc-cccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecC
Q 042434          176 LVETAVTSQIDSCQYHNSSV-AISLYEDHCC-GRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLE  253 (517)
Q Consensus       176 l~~~~~~~q~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~  253 (517)
                      ++-|.++..+++..|+.... .++...|+.. .|....++.+.++.||++.|+|+..+.+.++++||+.|.++++||+.+
T Consensus         4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t   83 (327)
T KOG0643|consen    4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET   83 (327)
T ss_pred             cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC
Confidence            34456777888888877666 7777777765 455669999999999999999999999999999999999999999998


Q ss_pred             CCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeC-----CCeEEEEECC-------CCcEEEEeCCCCCceEEEEEeCCC
Q 042434          254 DSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGN-----AEVLKLWDVE-------TGICKHTFGDHGFIVSSCAWFPDS  321 (517)
Q Consensus       254 ~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-----dg~i~iwd~~-------~~~~~~~~~~~~~~v~~i~~~~~~  321 (517)
                      ++.+   .++. ...+|..+.|+++|++++.+..     .+.|.++|++       ..++...+..+...++.+-|.|-+
T Consensus        84 Gk~l---a~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~  159 (327)
T KOG0643|consen   84 GKQL---ATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLG  159 (327)
T ss_pred             CcEE---EEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccC
Confidence            8654   3333 4688999999999998887643     4689999997       445677777888999999999999


Q ss_pred             CeEEEeeCCCceeEEEEeCCC-CeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEeeccCCCeeEE
Q 042434          322 KRLVCGSSDTEKGIFMCDCDG-NEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVISEEHPITSL  399 (517)
Q Consensus       322 ~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~  399 (517)
                      .+|++|..||.  |..||..+ .........|...|+.+.+++|..++++++.|.+-++||..+.. ........|+++.
T Consensus       160 ~~ii~Ghe~G~--is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~a  237 (327)
T KOG0643|consen  160 ETIIAGHEDGS--ISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTA  237 (327)
T ss_pred             CEEEEecCCCc--EEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccce
Confidence            99999999999  88888875 45555545556699999999999999999999999999999988 7777888999999


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEEc--CCC-----------CccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEE
Q 042434          400 SVSVDCKNFIVNLNSQEIHMWDV--AGK-----------WEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIW  466 (517)
Q Consensus       400 ~~s~~~~~l~~~~~d~~i~~~d~--~~~-----------~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw  466 (517)
                      +++|....++.++.....-+--.  +.+           .+....+.+|-.+   |.+++++|+|+..++|++||.|++.
T Consensus       238 aisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGP---INsvAfhPdGksYsSGGEDG~VR~h  314 (327)
T KOG0643|consen  238 AISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGP---INSVAFHPDGKSYSSGGEDGYVRLH  314 (327)
T ss_pred             ecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccC---cceeEECCCCcccccCCCCceEEEE
Confidence            99998888777765332222111  111           1334456677766   7778889999999999999999998


Q ss_pred             ecCC
Q 042434          467 NRRN  470 (517)
Q Consensus       467 d~~~  470 (517)
                      ....
T Consensus       315 ~Fd~  318 (327)
T KOG0643|consen  315 HFDS  318 (327)
T ss_pred             Eecc
Confidence            6543

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=6.3e-29  Score=217.45  Aligned_cols=251  Identities=20%  Similarity=0.290  Sum_probs=206.0

Q ss_pred             EEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc---EEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEE
Q 042434          260 KHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI---CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIF  336 (517)
Q Consensus       260 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~  336 (517)
                      .+.+..|.+.|+-+.||++|++||+++.|.+..+|++....   ..+++.+|..+|..+.|+||.+++++++.+..  ++
T Consensus       217 ~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~--~~  294 (519)
T KOG0293|consen  217 WQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEV--LS  294 (519)
T ss_pred             hhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHh--ee
Confidence            35678899999999999999999999999999999886543   46778899999999999999999999999998  99


Q ss_pred             EEeCCCCeeE-eeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeC
Q 042434          337 MCDCDGNEIK-AWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLN  413 (517)
Q Consensus       337 ~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~  413 (517)
                      .||..+.... .+...+...+.+++|.|||..+++|+.|+.+..||+....  .........+.++++++||+++++.+.
T Consensus       295 lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~  374 (519)
T KOG0293|consen  295 LWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTV  374 (519)
T ss_pred             eccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEec
Confidence            9999865544 3333445579999999999999999999999999998765  222223356999999999999999999


Q ss_pred             CCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCC--eeEEEecC
Q 042434          414 SQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMT--VNCVSWNP  491 (517)
Q Consensus       414 d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~--v~~v~~~~  491 (517)
                      |..|++|+..+... ...... ..   .+++...|.|++++++.-.+..|++||++..+.+..+.||...  +..-+|--
T Consensus       375 d~~i~l~~~e~~~d-r~lise-~~---~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg  449 (519)
T KOG0293|consen  375 DKKIRLYNREARVD-RGLISE-EQ---PITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGG  449 (519)
T ss_pred             ccceeeechhhhhh-hccccc-cC---ceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCC
Confidence            99999999866422 112222 22   2566666999999999999999999999999999999998754  44445654


Q ss_pred             CCCcEEEEeeCCCcEEEeCCCCCCCC
Q 042434          492 KRPKMLASASDDHTIRIWGPCQSSEV  517 (517)
Q Consensus       492 ~~~~~l~s~~~dg~v~iw~~~~~~~v  517 (517)
                      ....+++|||.|+.|+||+..+|+.+
T Consensus       450 ~~~~fiaSGSED~kvyIWhr~sgkll  475 (519)
T KOG0293|consen  450 GNDKFIASGSEDSKVYIWHRISGKLL  475 (519)
T ss_pred             CCcceEEecCCCceEEEEEccCCcee
Confidence            44479999999999999999998763

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.96  E-value=1.5e-27  Score=226.34  Aligned_cols=312  Identities=16%  Similarity=0.178  Sum_probs=255.3

Q ss_pred             cccccCCCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEE
Q 042434          196 AISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAW  275 (517)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~  275 (517)
                      .++...+....|+--.++.+.++.++.+.|+++.=+|--..+|.|..+|+|.++++..+   +.+.+++...+.|++++|
T Consensus       176 vvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~d---kil~sFk~d~g~VtslSF  252 (910)
T KOG1539|consen  176 VVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFD---KILMSFKQDWGRVTSLSF  252 (910)
T ss_pred             EEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccC---cEEEEEEccccceeEEEe
Confidence            44555666667777788999999999999999999998899999999999999999776   444666644699999999


Q ss_pred             CCCCCe-EEEEeCCCeEEEEECCCCcEEEEeC-CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEe------
Q 042434          276 SPDDTK-LLTCGNAEVLKLWDVETGICKHTFG-DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKA------  347 (517)
Q Consensus       276 s~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~------  347 (517)
                      ..||+. +++|+..|.+.+||++..+.+.... .|.+.|....|.|....+++++.|+..++|++|......+.      
T Consensus       253 rtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~G  332 (910)
T KOG1539|consen  253 RTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGG  332 (910)
T ss_pred             ccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccC
Confidence            999965 5667777999999999888777665 78899999999999999999999999999999832110000      


Q ss_pred             ---------eeC--------------------------------------------------------------------
Q 042434          348 ---------WRG--------------------------------------------------------------------  350 (517)
Q Consensus       348 ---------~~~--------------------------------------------------------------------  350 (517)
                               +.+                                                                    
T Consensus       333 Hs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~  412 (910)
T KOG1539|consen  333 HSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWD  412 (910)
T ss_pred             CCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhc
Confidence                     000                                                                    


Q ss_pred             ---------------------------cC------CCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEe----ecc
Q 042434          351 ---------------------------TR------IPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERV----ISE  392 (517)
Q Consensus       351 ---------------------------~~------~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~----~~~  392 (517)
                                                 .+      ...+++++.++.|++.+.|++.|.|-+|++.++. ...    ..|
T Consensus       413 Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah  492 (910)
T KOG1539|consen  413 NVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAH  492 (910)
T ss_pred             ceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccc
Confidence                                       11      1357889999999999999999999999999987 222    378


Q ss_pred             CCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCc
Q 042434          393 EHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSK  472 (517)
Q Consensus       393 ~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  472 (517)
                      ..+|+.++...-++.+++++.+|.+.+||..+. .....+.-...    +..+..+.....++.+..|-.|+++|..+.+
T Consensus       493 ~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k-~l~~~l~l~~~----~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~k  567 (910)
T KOG1539|consen  493 KGEVTGLAVDGTNRLLVSAGADGILKFWDFKKK-VLKKSLRLGSS----ITGIVYHRVSDLLAIALDDFSIRVVDVVTRK  567 (910)
T ss_pred             cCceeEEEecCCCceEEEccCcceEEEEecCCc-ceeeeeccCCC----cceeeeeehhhhhhhhcCceeEEEEEchhhh
Confidence            899999999999999999999999999999776 32323221111    3333335566788999999999999999999


Q ss_pred             eeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434          473 PIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSE  516 (517)
Q Consensus       473 ~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~  516 (517)
                      .++.+.||.+.|++++||||| +.|++++.|++||+||+.++..
T Consensus       568 vvR~f~gh~nritd~~FS~Dg-rWlisasmD~tIr~wDlpt~~l  610 (910)
T KOG1539|consen  568 VVREFWGHGNRITDMTFSPDG-RWLISASMDSTIRTWDLPTGTL  610 (910)
T ss_pred             hhHHhhccccceeeeEeCCCC-cEEEEeecCCcEEEEeccCcce
Confidence            999999999999999999999 7999999999999999998864

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=9.7e-27  Score=225.85  Aligned_cols=245  Identities=11%  Similarity=0.139  Sum_probs=186.9

Q ss_pred             eeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCC-CCeEEEEeCCCeEEEEECCCCc--------EEEEeCCCCC
Q 042434          240 SSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPD-DTKLLTCGNAEVLKLWDVETGI--------CKHTFGDHGF  310 (517)
Q Consensus       240 ~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~--------~~~~~~~~~~  310 (517)
                      |+.++.|++|+....   .....+.+|.++|.+++|+|+ +.+|++|+.||+|++||+.++.        ++..+.+|..
T Consensus        50 GG~~gvI~L~~~~r~---~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~  126 (568)
T PTZ00420         50 GGLIGAIRLENQMRK---PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKK  126 (568)
T ss_pred             CCceeEEEeeecCCC---ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCC
Confidence            667889999998533   466788999999999999997 7899999999999999997642        3446778999


Q ss_pred             ceEEEEEeCCCCe-EEEeeCCCceeEEEEeCCCCee-EeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--
Q 042434          311 IVSSCAWFPDSKR-LVCGSSDTEKGIFMCDCDGNEI-KAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--  386 (517)
Q Consensus       311 ~v~~i~~~~~~~~-l~~~~~d~~v~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--  386 (517)
                      .|.+++|+|++.. +++++.|+.  |.+||...... ..+.  +...|.+++|+|+|..+++++.|+.|++||++++.  
T Consensus       127 ~V~sVaf~P~g~~iLaSgS~Dgt--IrIWDl~tg~~~~~i~--~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i  202 (568)
T PTZ00420        127 KISIIDWNPMNYYIMCSSGFDSF--VNIWDIENEKRAFQIN--MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA  202 (568)
T ss_pred             cEEEEEECCCCCeEEEEEeCCCe--EEEEECCCCcEEEEEe--cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEE
Confidence            9999999999876 468899999  77888875443 3332  23579999999999999999999999999999887  


Q ss_pred             EEeeccCCCeeE-----EEEcCCCCEEEEEeCCC----eEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEe
Q 042434          387 ERVISEEHPITS-----LSVSVDCKNFIVNLNSQ----EIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASG  457 (517)
Q Consensus       387 ~~~~~~~~~i~~-----~~~s~~~~~l~~~~~d~----~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  457 (517)
                      .....|.+.+..     ..|++++.++++++.++    .|++||++.....+.....+.. ...+...+.+++|.++++|
T Consensus       203 ~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~-~~~L~p~~D~~tg~l~lsG  281 (568)
T PTZ00420        203 SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNA-SAPLIPHYDESTGLIYLIG  281 (568)
T ss_pred             EEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCC-ccceEEeeeCCCCCEEEEE
Confidence            333445544332     23568889999987764    7999999865344444433322 2233344446679999999


Q ss_pred             cCCCcEEEEecCCCceeEEec--CCCCCeeEEEecCCC
Q 042434          458 SENSQIYIWNRRNSKPIEILS--GHSMTVNCVSWNPKR  493 (517)
Q Consensus       458 ~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~v~~~~~~  493 (517)
                      +.|+.|++|++..+. +..+.  .+..++.+++|.|..
T Consensus       282 kGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        282 KGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             ECCCeEEEEEccCCc-EEeecccccCCCccceEEcccc
Confidence            999999999998764 23332  256788999999975

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=4.9e-28  Score=231.06  Aligned_cols=245  Identities=19%  Similarity=0.243  Sum_probs=192.6

Q ss_pred             EEEec-cCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCC--------------------------------C-------
Q 042434          260 KHTLR-SHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVET--------------------------------G-------  299 (517)
Q Consensus       260 ~~~~~-~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~--------------------------------~-------  299 (517)
                      ...+. .|.+.|+++.||+||+|||+||.||.|+||.+..                                .       
T Consensus       259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~  338 (712)
T KOG0283|consen  259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS  338 (712)
T ss_pred             eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence            34455 8999999999999999999999999999998754                                0       


Q ss_pred             ---------------------cEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCC-eeEeeeCcCCCceE
Q 042434          300 ---------------------ICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGN-EIKAWRGTRIPKVL  357 (517)
Q Consensus       300 ---------------------~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~-~~~~~~~~~~~~i~  357 (517)
                                           ++++.|.+|.+.|..+.|+.+ ++|++++.|.+  |.+|++..+ ++..+. |. ..|+
T Consensus       339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKT--VRLWh~~~~~CL~~F~-Hn-dfVT  413 (712)
T KOG0283|consen  339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKT--VRLWHPGRKECLKVFS-HN-DFVT  413 (712)
T ss_pred             cccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEecccccc--EEeecCCCcceeeEEe-cC-CeeE
Confidence                                 112345679999999999965 58999999999  777887754 444444 33 4899


Q ss_pred             EEEEcc-CCCEEEEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCc
Q 042434          358 DLAVTP-DGENLISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGH  435 (517)
Q Consensus       358 ~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~  435 (517)
                      |++|+| |.+++++|+-||.++||++...+ ........-|++++|.|||++.++|+.+|.+++|+..+. .......-+
T Consensus       414 cVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~l-k~~~~~~I~  492 (712)
T KOG0283|consen  414 CVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGL-KLVSDFHIR  492 (712)
T ss_pred             EEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCC-eEEEeeeEe
Confidence            999999 67899999999999999999888 444455678999999999999999999999999998765 333222211


Q ss_pred             c--------cCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCC--CeeEEEecCCCCcEEEEeeCCCc
Q 042434          436 S--------QNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSM--TVNCVSWNPKRPKMLASASDDHT  505 (517)
Q Consensus       436 ~--------~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~v~~~~~~~~~l~s~~~dg~  505 (517)
                      .        ..++.+.+....++  .+++.+.|..|+|||.++..++..++|+..  .-....|+.|| +.|+++++|..
T Consensus       493 ~~~~Kk~~~~rITG~Q~~p~~~~--~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dg-k~IVs~seDs~  569 (712)
T KOG0283|consen  493 LHNKKKKQGKRITGLQFFPGDPD--EVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDG-KHIVSASEDSW  569 (712)
T ss_pred             eccCccccCceeeeeEecCCCCC--eEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCC-CEEEEeecCce
Confidence            1        12333444333333  677788999999999999999999997643  34567899999 79999999999


Q ss_pred             EEEeCCCC
Q 042434          506 IRIWGPCQ  513 (517)
Q Consensus       506 v~iw~~~~  513 (517)
                      |+||+...
T Consensus       570 VYiW~~~~  577 (712)
T KOG0283|consen  570 VYIWKNDS  577 (712)
T ss_pred             EEEEeCCC
Confidence            99999853

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.9e-27  Score=200.27  Aligned_cols=264  Identities=17%  Similarity=0.228  Sum_probs=211.1

Q ss_pred             cccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCC--eEEEEeCCC
Q 042434          212 TETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDT--KLLTCGNAE  289 (517)
Q Consensus       212 ~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~--~l~s~~~dg  289 (517)
                      -.+...+..|.++|++++.  +|.|+|+||.|-+|+|||+....   ....+..|.+.|+++.|.+.-.  .|++|+.||
T Consensus        33 l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~---qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG  107 (362)
T KOG0294|consen   33 LKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRK---QLGILLSHAGSITALKFYPPLSKSHLLSGSDDG  107 (362)
T ss_pred             eeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchh---hhcceeccccceEEEEecCCcchhheeeecCCC
Confidence            3456678899999999998  67899999999999999996553   3466778999999999998764  899999999


Q ss_pred             eEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC-CeeEeeeCcCCCceEEEEEccCCCEE
Q 042434          290 VLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG-NEIKAWRGTRIPKVLDLAVTPDGENL  368 (517)
Q Consensus       290 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l  368 (517)
                      .|.+|+...-.++..+++|.+.|+.++.+|.+++-++.+.|+.  +..|++-. +.-......+  ..+.+.|+|.|.++
T Consensus       108 ~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~--lr~WNLV~Gr~a~v~~L~~--~at~v~w~~~Gd~F  183 (362)
T KOG0294|consen  108 HIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQV--LRTWNLVRGRVAFVLNLKN--KATLVSWSPQGDHF  183 (362)
T ss_pred             cEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCce--eeeehhhcCccceeeccCC--cceeeEEcCCCCEE
Confidence            9999999999999999999999999999999999999999999  88888753 3333333333  34559999999999


Q ss_pred             EEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecC
Q 042434          369 ISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFG  447 (517)
Q Consensus       369 ~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~  447 (517)
                      +.+..++ |-+|.+.+.. .........+.++.|. ++..+++|..++.|.+||.... .+...+.+|...+..+.... 
T Consensus       184 ~v~~~~~-i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~-~~~~~~~AH~~RVK~i~~~~-  259 (362)
T KOG0294|consen  184 VVSGRNK-IDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSD-TPLTEFLAHENRVKDIASYT-  259 (362)
T ss_pred             EEEeccE-EEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCC-ccceeeecchhheeeeEEEe-
Confidence            8887765 8889887765 2233333445555554 5678999999999999999875 78888999998876665544 


Q ss_pred             CCCCcEEEEecCCCcEEEEecCCC-----ceeEEecCCCCCeeEEEe
Q 042434          448 GLDGTFIASGSENSQIYIWNRRNS-----KPIEILSGHSMTVNCVSW  489 (517)
Q Consensus       448 s~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~h~~~v~~v~~  489 (517)
                      .|++.+|++++.||.|+|||++..     +++..+.. ...++|+..
T Consensus       260 ~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~~  305 (362)
T KOG0294|consen  260 NPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCLRV  305 (362)
T ss_pred             cCCceEEEEeccCceEEEEEccccccCCcceeEEeec-CCccceeee
Confidence            688899999999999999998865     34555443 455566554

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.2e-28  Score=200.86  Aligned_cols=242  Identities=16%  Similarity=0.207  Sum_probs=199.3

Q ss_pred             ccCcEEEEEECCC-CCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCC-CCeEEEEeCCCeEEEEECCC
Q 042434          221 HKNEVWFVQFSNN-GEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPD-DTKLLTCGNAEVLKLWDVET  298 (517)
Q Consensus       221 h~~~v~~~~~s~~-~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~iwd~~~  298 (517)
                      -.+.+..++|+++ .+.+++++.||++++||..  ..-.++..++.|...|.++.|++- +..++++|.|++|++|+...
T Consensus        59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~--~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r  136 (311)
T KOG0277|consen   59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLT--MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR  136 (311)
T ss_pred             cccceeEeeecCCCcceEEEEecCceEEEeccC--CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC
Confidence            5688999999994 5688899999999999964  334678889999999999999984 56677889999999999999


Q ss_pred             CcEEEEeCCCCCceEEEEEeC-CCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEcc-CCCEEEEEeCCCc
Q 042434          299 GICKHTFGDHGFIVSSCAWFP-DSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTP-DGENLISVLSDKD  376 (517)
Q Consensus       299 ~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~  376 (517)
                      ++.+.++.+|...|...+|+| .++.+++++.|+..++|..+..++.+. +..+. ..+.++.|+. +.+.+++|+.|+.
T Consensus       137 ~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~-~Eil~cdw~ky~~~vl~Tg~vd~~  214 (311)
T KOG0277|consen  137 PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHN-SEILCCDWSKYNHNVLATGGVDNL  214 (311)
T ss_pred             CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEecc-ceeEeecccccCCcEEEecCCCce
Confidence            999999999999999999999 578999999999966655555566555 44444 5899999998 4568889999999


Q ss_pred             EEEEECCCce---EEeeccCCCeeEEEEcCCC-CEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCc
Q 042434          377 IRILNLGTYA---ERVISEEHPITSLSVSVDC-KNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGT  452 (517)
Q Consensus       377 i~i~d~~~~~---~~~~~~~~~i~~~~~s~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  452 (517)
                      |+.||++..+   .....|.-.|..+.|||.. ..+++++.|-++++||...+...+.++..|..-...+....+  ++.
T Consensus       215 vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~--~~~  292 (311)
T KOG0277|consen  215 VRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLF--DPG  292 (311)
T ss_pred             EEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccc--cCc
Confidence            9999998876   4556788899999999964 567888999999999998665667777766654443433332  677


Q ss_pred             EEEEecCCCcEEEEec
Q 042434          453 FIASGSENSQIYIWNR  468 (517)
Q Consensus       453 ~l~~~~~dg~i~iwd~  468 (517)
                      ++|+.+.|+.++||+.
T Consensus       293 ~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  293 QVASTGWDELLYVWNP  308 (311)
T ss_pred             eeeecccccceeeecc
Confidence            9999999999999984

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=1.7e-26  Score=223.34  Aligned_cols=208  Identities=17%  Similarity=0.256  Sum_probs=171.1

Q ss_pred             EEeccccCcEEEEEECC-CCCEEEEeeCCCcEEEEEecCCCe----eeEEEEeccCCCCEEEEEECCCC-CeEEEEeCCC
Q 042434          216 QILTEHKNEVWFVQFSN-NGEYLASSSSDCSAIIWKVLEDSK----LTLKHTLRSHQNPVSFVAWSPDD-TKLLTCGNAE  289 (517)
Q Consensus       216 ~~l~~h~~~v~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~----~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg  289 (517)
                      ..+.+|.+.|++++|+| ++++||+|+.||+|++||+.++..    ...+..+.+|...|.+++|+|++ ++|++++.|+
T Consensus        69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg  148 (493)
T PTZ00421         69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM  148 (493)
T ss_pred             ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence            34789999999999999 889999999999999999965421    13456789999999999999985 6999999999


Q ss_pred             eEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC-CeeEeeeCcCCCceEEEEEccCCCEE
Q 042434          290 VLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG-NEIKAWRGTRIPKVLDLAVTPDGENL  368 (517)
Q Consensus       290 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l  368 (517)
                      +|+|||+.+++.+..+..|...|.+++|+|++.+|++++.|+.  |.+||.+. ..+..+..+....+..+.|.+++..+
T Consensus       149 tVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~--IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~i  226 (493)
T PTZ00421        149 VVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKK--LNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLI  226 (493)
T ss_pred             EEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCE--EEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeE
Confidence            9999999999999999999999999999999999999999999  77888875 44445555544345677889988887


Q ss_pred             EEEe----CCCcEEEEECCCce--EEe--eccCCCeeEEEEcCCCCEEEEEe-CCCeEEEEEcCCC
Q 042434          369 ISVL----SDKDIRILNLGTYA--ERV--ISEEHPITSLSVSVDCKNFIVNL-NSQEIHMWDVAGK  425 (517)
Q Consensus       369 ~~~~----~dg~i~i~d~~~~~--~~~--~~~~~~i~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~  425 (517)
                      ++++    .|+.|++||+++..  ...  ......+....|+++++.+++++ .|+.|++||+.++
T Consensus       227 vt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~  292 (493)
T PTZ00421        227 ITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE  292 (493)
T ss_pred             EEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence            7654    47899999998755  211  12334556677899999999887 4999999999876

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.3e-28  Score=225.72  Aligned_cols=286  Identities=19%  Similarity=0.326  Sum_probs=234.4

Q ss_pred             ccCcEE---EEEEC-CCCCEEEEeeCCCcEEEEEecCCCee---eEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEE
Q 042434          221 HKNEVW---FVQFS-NNGEYLASSSSDCSAIIWKVLEDSKL---TLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKL  293 (517)
Q Consensus       221 h~~~v~---~~~~s-~~~~~l~t~~~dg~i~iw~~~~~~~~---~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i  293 (517)
                      |...|.   .+..+ |+++||.|||.||.|++|++......   .....+..|.+.|..+....+++.|+++|.|-+|++
T Consensus        20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~   99 (735)
T KOG0308|consen   20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKV   99 (735)
T ss_pred             ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEE
Confidence            444444   34444 47788999999999999998644331   235677889999999999999999999999999999


Q ss_pred             EECCCC--cEEEEeCCCCCceEEEEE-eCCCCeEEEeeCCCceeEEEEeCCCCee-----------EeeeCcCCCceEEE
Q 042434          294 WDVETG--ICKHTFGDHGFIVSSCAW-FPDSKRLVCGSSDTEKGIFMCDCDGNEI-----------KAWRGTRIPKVLDL  359 (517)
Q Consensus       294 wd~~~~--~~~~~~~~~~~~v~~i~~-~~~~~~l~~~~~d~~v~i~~~~~~~~~~-----------~~~~~~~~~~i~~~  359 (517)
                      |+...+  -|..++..|...|.|+++ .++...+++|+-|+.  |++||.+....           .....++...|.++
T Consensus       100 W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~--IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSL  177 (735)
T KOG0308|consen  100 WNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRK--IFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSL  177 (735)
T ss_pred             eecccCcchhHhhhhcccchheeeeecccCceeEEecCCCcc--EEEEEccCcchhhhhhccccccccCCCCCccceeee
Confidence            999877  578888999999999999 788899999999999  77888763311           11122445689999


Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCccc
Q 042434          360 AVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQ  437 (517)
Q Consensus       360 ~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~  437 (517)
                      +.++.|..+++|+..+.+++||.++.+  ....+|...|..+..++||..+++++.||+|++||+... ....++..|..
T Consensus       178 A~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ-rCl~T~~vH~e  256 (735)
T KOG0308|consen  178 AMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ-RCLATYIVHKE  256 (735)
T ss_pred             ecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc-ceeeeEEeccC
Confidence            999999999999999999999999987  566689999999999999999999999999999999877 77888999988


Q ss_pred             CceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434          438 NKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ  513 (517)
Q Consensus       438 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~  513 (517)
                      .++.+.+   +|+-..+++|+.||.|+.=|+++......+.....+|..+..+.+. .-+-+++.|+.|+-|....
T Consensus       257 ~VWaL~~---~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~-~~~WvtTtds~I~rW~~~~  328 (735)
T KOG0308|consen  257 GVWALQS---SPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHD-NSVWVTTTDSSIKRWKLEP  328 (735)
T ss_pred             ceEEEee---CCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhcccc-CCceeeeccccceecCCcc
Confidence            8555444   7888999999999999999999864443444467788888887555 3457888999999998653

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=4.6e-28  Score=197.91  Aligned_cols=250  Identities=21%  Similarity=0.327  Sum_probs=204.9

Q ss_pred             EeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECC--CCCeEEEEeCCCeEEEE
Q 042434          217 ILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP--DDTKLLTCGNAEVLKLW  294 (517)
Q Consensus       217 ~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~--~~~~l~s~~~dg~i~iw  294 (517)
                      .-.+|.+.|..+...-.|+.|||++.|++|+|+.+..+.....+.++.+|.++|..++|..  -|.+||++++||.|.||
T Consensus         6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW   85 (299)
T KOG1332|consen    6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW   85 (299)
T ss_pred             hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence            3457999999999999999999999999999999987777688899999999999999976  79999999999999999


Q ss_pred             ECCCCcE--EEEeCCCCCceEEEEEeCC--CCeEEEeeCCCceeEEEEeCC-CCeeEeeeCcCCCceEEEEEccC---C-
Q 042434          295 DVETGIC--KHTFGDHGFIVSSCAWFPD--SKRLVCGSSDTEKGIFMCDCD-GNEIKAWRGTRIPKVLDLAVTPD---G-  365 (517)
Q Consensus       295 d~~~~~~--~~~~~~~~~~v~~i~~~~~--~~~l~~~~~d~~v~i~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~---~-  365 (517)
                      .-++|+-  ...+..|...|++++|.|.  |-.|++++.||.|.|..++.+ +.....+...|.-.|++++|.|.   | 
T Consensus        86 ke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~  165 (299)
T KOG1332|consen   86 KEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGS  165 (299)
T ss_pred             ecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcc
Confidence            9888853  3355689999999999996  668999999999999998888 44445555556568999999986   4 


Q ss_pred             ----------CEEEEEeCCCcEEEEECCCce----EEeeccCCCeeEEEEcCCC----CEEEEEeCCCeEEEEEcCCCCc
Q 042434          366 ----------ENLISVLSDKDIRILNLGTYA----ERVISEEHPITSLSVSVDC----KNFIVNLNSQEIHMWDVAGKWE  427 (517)
Q Consensus       366 ----------~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~i~~~~~s~~~----~~l~~~~~d~~i~~~d~~~~~~  427 (517)
                                +.|++|+.|..|+||+.....    ..+..|...+..++|.|.-    .++++++.||++.||..+....
T Consensus       166 ~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e  245 (299)
T KOG1332|consen  166 LVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYE  245 (299)
T ss_pred             ccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccC
Confidence                      569999999999999998854    3466788899999999964    5799999999999999864311


Q ss_pred             c--ceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecC
Q 042434          428 K--PFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRR  469 (517)
Q Consensus       428 ~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~  469 (517)
                      .  ...+.....   .+-.+.||..|++|++++.|+.|.+|.-.
T Consensus       246 ~wk~tll~~f~~---~~w~vSWS~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  246 PWKKTLLEEFPD---VVWRVSWSLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             cccccccccCCc---ceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence            1  111222222   24445568999999999999999999643

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=3.7e-28  Score=226.47  Aligned_cols=324  Identities=16%  Similarity=0.205  Sum_probs=248.6

Q ss_pred             cccccCCCCCc-cccccCCCcccccCCC----cccEEEeccccCcEEEEEECCC-----------CCEEEEeeCCCcEEE
Q 042434          185 IDSCQYHNSSV-AISLYEDHCCGRDQIP----TETVQILTEHKNEVWFVQFSNN-----------GEYLASSSSDCSAII  248 (517)
Q Consensus       185 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~l~~h~~~v~~~~~s~~-----------~~~l~t~~~dg~i~i  248 (517)
                      ..+|.|.+... ...++.|+....|...    ......+-.|...||.+.--|.           ...++|++.|++|++
T Consensus       327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl  406 (1080)
T KOG1408|consen  327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL  406 (1080)
T ss_pred             eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence            34566765554 5567778776544331    1234445569999999886651           135889999999999


Q ss_pred             EEecCCCeeeE----------------------------------EEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEE
Q 042434          249 WKVLEDSKLTL----------------------------------KHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLW  294 (517)
Q Consensus       249 w~~~~~~~~~~----------------------------------~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw  294 (517)
                      |++........                                  ....-+....+.+++.+|+|++||+|..-|+++||
T Consensus       407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy  486 (1080)
T KOG1408|consen  407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVY  486 (1080)
T ss_pred             eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEE
Confidence            99864211000                                  00011234579999999999999999999999999


Q ss_pred             ECCCCcEEEEeCCCCCceEEEEEeC---CCCeEEEeeCCCceeEEEEeCCC-CeeEeeeCcCCCceEEEEEccCC--CEE
Q 042434          295 DVETGICKHTFGDHGFIVSSCAWFP---DSKRLVCGSSDTEKGIFMCDCDG-NEIKAWRGTRIPKVLDLAVTPDG--ENL  368 (517)
Q Consensus       295 d~~~~~~~~~~~~~~~~v~~i~~~~---~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~--~~l  368 (517)
                      ++..-+....+..|...|.|+.|+.   ..++|++++.|..  |.++|... -.+......|...|+++.|...|  ..+
T Consensus       487 ~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRl--IHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~M  564 (1080)
T KOG1408|consen  487 DLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRL--IHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKM  564 (1080)
T ss_pred             EehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCce--EEEEecccccchhhhhcccccceeEEEEeecCCceEE
Confidence            9999888888899999999999986   3578999999999  66667653 23333344555789999998887  688


Q ss_pred             EEEeCCCcEEEEECCCce--E-----EeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccC-ce
Q 042434          369 ISVLSDKDIRILNLGTYA--E-----RVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQN-KY  440 (517)
Q Consensus       369 ~~~~~dg~i~i~d~~~~~--~-----~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~-~~  440 (517)
                      ++++.|..|.+--.+...  .     ........+..+++.|..+++++++.|..|++||+.++ +..+.|.+.... ..
T Consensus       565 iscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sg-Kq~k~FKgs~~~eG~  643 (1080)
T KOG1408|consen  565 ISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESG-KQVKSFKGSRDHEGD  643 (1080)
T ss_pred             EeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecccc-ceeeeecccccCCCc
Confidence            999999877654333211  1     11223456889999999999999999999999999988 667777765554 33


Q ss_pred             EEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434          441 VIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ  513 (517)
Q Consensus       441 ~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~  513 (517)
                      .|... ..|.|.|+++.+.|.++.++|..+|+++.++.||...|+.+.|.+|. +.|++.+.||.|.||.+..
T Consensus       644 lIKv~-lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDC-kHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  644 LIKVI-LDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDC-KHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             eEEEE-ECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccc-hhheeecCCceEEEEECch
Confidence            44443 48999999999999999999999999999999999999999999999 7899999999999999864

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.96  E-value=4e-27  Score=219.21  Aligned_cols=284  Identities=19%  Similarity=0.304  Sum_probs=236.2

Q ss_pred             ccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEE-EEECC-CCCeEEEEeCCCe
Q 042434          213 ETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSF-VAWSP-DDTKLLTCGNAEV  290 (517)
Q Consensus       213 ~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~-l~~s~-~~~~l~s~~~dg~  290 (517)
                      +..+.+.||+..|..+++.+.. .++++|.||++++|+-.. +.+.....+.+|.+-|.+ +++.+ ++-.+++|+.|++
T Consensus         5 ~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~-~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~   82 (745)
T KOG0301|consen    5 KLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKG-KQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT   82 (745)
T ss_pred             eeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccC-cccccceecccCcceeeccceeccccCcceEeecccce
Confidence            4567899999999998876654 799999999999998753 344445667778888777 88875 4556999999999


Q ss_pred             EEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEE
Q 042434          291 LKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLIS  370 (517)
Q Consensus       291 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  370 (517)
                      +.+|...+..+...+.+|...|.|++...++. +++||.|.+  +.+|... .....+.+ |...|.++..-|++ .+++
T Consensus        83 i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~T--akvW~~~-~l~~~l~g-H~asVWAv~~l~e~-~~vT  156 (745)
T KOG0301|consen   83 IIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDST--AKVWRIG-ELVYSLQG-HTASVWAVASLPEN-TYVT  156 (745)
T ss_pred             EEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccc--eEEecch-hhhcccCC-cchheeeeeecCCC-cEEe
Confidence            99999999999999999999999999887777 999999999  5555443 22222444 44689999999988 8899


Q ss_pred             EeCCCcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCC
Q 042434          371 VLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLD  450 (517)
Q Consensus       371 ~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  450 (517)
                      |+.|.+|++|.-.+....+.+|...|..+++-+++ .|++++.||.|++|++.+  ..+..+.+|..-.+.+..   ..+
T Consensus       157 gsaDKtIklWk~~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~g--e~l~~~~ghtn~vYsis~---~~~  230 (745)
T KOG0301|consen  157 GSADKTIKLWKGGTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDG--EVLLEMHGHTNFVYSISM---ALS  230 (745)
T ss_pred             ccCcceeeeccCCchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccC--ceeeeeeccceEEEEEEe---cCC
Confidence            99999999999876668888899999999999874 588999999999999954  678888999988777763   467


Q ss_pred             CcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCC
Q 042434          451 GTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQS  514 (517)
Q Consensus       451 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~  514 (517)
                      +..++++++|++++||+..  ++.+.+.-....|+++.+-++|.  +++|+.||.||||.....
T Consensus       231 ~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD--Ivvg~SDG~VrVfT~~k~  290 (745)
T KOG0301|consen  231 DGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD--IVVGGSDGRVRVFTVDKD  290 (745)
T ss_pred             CCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC--EEEeccCceEEEEEeccc
Confidence            7899999999999999976  78888876667999999999984  889999999999987744

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=2.5e-27  Score=195.47  Aligned_cols=247  Identities=21%  Similarity=0.295  Sum_probs=210.7

Q ss_pred             EEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEE--eCCCCCceEEEEEeC-CCCeEEEeeCCCceeEEE
Q 042434          261 HTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHT--FGDHGFIVSSCAWFP-DSKRLVCGSSDTEKGIFM  337 (517)
Q Consensus       261 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~i~~~~-~~~~l~~~~~d~~v~i~~  337 (517)
                      +.+.+|...|.+++|+.+|..|++|+.|+++.+|+++..+....  ..+|.+.|-.++|+| ....|++++.|.+  |.+
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~--ir~   91 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKT--IRI   91 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCce--EEE
Confidence            45678999999999999999999999999999999987755443  357888999999988 4678999999999  777


Q ss_pred             EeCC-CCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCC
Q 042434          338 CDCD-GNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQ  415 (517)
Q Consensus       338 ~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~  415 (517)
                      ||.+ +++........  .-.-+.|+|+|.++++++.|..|.+.|.++.+ .........+..++|+.++..++.....|
T Consensus        92 wd~r~~k~~~~i~~~~--eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG  169 (313)
T KOG1407|consen   92 WDIRSGKCTARIETKG--ENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLG  169 (313)
T ss_pred             EEeccCcEEEEeeccC--cceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCc
Confidence            7776 44444444333  34567899999999999999999999999887 55556667788999998888888888889


Q ss_pred             eEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCc
Q 042434          416 EIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPK  495 (517)
Q Consensus       416 ~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~  495 (517)
                      +|.|...... +++..+..|+....   ++.++|+|+|+|+|+.|..+.+||+...-+++.+.-+.-+|..+.|+.+| +
T Consensus       170 ~v~ILsypsL-kpv~si~AH~snCi---cI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg-~  244 (313)
T KOG1407|consen  170 CVEILSYPSL-KPVQSIKAHPSNCI---CIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDG-R  244 (313)
T ss_pred             eEEEEecccc-ccccccccCCcceE---EEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCc-c
Confidence            9999998866 88888999987633   44569999999999999999999999999999999999999999999999 8


Q ss_pred             EEEEeeCCCcEEEeCCCCCCC
Q 042434          496 MLASASDDHTIRIWGPCQSSE  516 (517)
Q Consensus       496 ~l~s~~~dg~v~iw~~~~~~~  516 (517)
                      +||++|.|..|-|=++.+|.+
T Consensus       245 ~lASaSEDh~IDIA~vetGd~  265 (313)
T KOG1407|consen  245 MLASASEDHFIDIAEVETGDR  265 (313)
T ss_pred             eeeccCccceEEeEecccCCe
Confidence            999999999998888888765

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=4e-26  Score=193.08  Aligned_cols=270  Identities=19%  Similarity=0.230  Sum_probs=219.1

Q ss_pred             ccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc
Q 042434          221 HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI  300 (517)
Q Consensus       221 h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~  300 (517)
                      ..+.|..+.|+|.+..|++++.||++++|++...   .. .....|..++.+++|.+ ...+++|+.||.|+.+|+.++.
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~---~l-~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~   86 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN---SL-KLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN   86 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccch---hh-hhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCc
Confidence            4788999999999999999999999999999654   22 22334899999999986 5689999999999999998887


Q ss_pred             EEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEE
Q 042434          301 CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRIL  380 (517)
Q Consensus       301 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  380 (517)
                      .. .+..|..+|.|+.+++-...+++|+.|++  |.+||.++.......... ..|.++..  .|+.|++|+.+..+.+|
T Consensus        87 ~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~--ik~wD~R~~~~~~~~d~~-kkVy~~~v--~g~~LvVg~~~r~v~iy  160 (323)
T KOG1036|consen   87 ED-QIGTHDEGIRCIEYSYEVGCVISGSWDKT--IKFWDPRNKVVVGTFDQG-KKVYCMDV--SGNRLVVGTSDRKVLIY  160 (323)
T ss_pred             ce-eeccCCCceEEEEeeccCCeEEEcccCcc--EEEEeccccccccccccC-ceEEEEec--cCCEEEEeecCceEEEE
Confidence            54 45589999999999999999999999999  888998863332222222 26777665  46789999999999999


Q ss_pred             ECCCceEE----eeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC---CccceEEeCccc------CceEEEeecC
Q 042434          381 NLGTYAER----VISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK---WEKPFKYTGHSQ------NKYVIRSCFG  447 (517)
Q Consensus       381 d~~~~~~~----~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~---~~~~~~~~~~~~------~~~~i~~~~~  447 (517)
                      |+++....    ....+..+.++++-|++.-+++++-+|.|.+=.+...   ......+..|..      ..+++..+.|
T Consensus       161 DLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~F  240 (323)
T KOG1036|consen  161 DLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAF  240 (323)
T ss_pred             EcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEe
Confidence            99987722    3345567899999999999999999999887655433   133444555543      3577888999


Q ss_pred             CCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeC
Q 042434          448 GLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASD  502 (517)
Q Consensus       448 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~  502 (517)
                      +|--..++||+.||.|.+||..+.+.+..+......|.+++|+.+| ..||.++.
T Consensus       241 hp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG-~~LAia~s  294 (323)
T KOG1036|consen  241 HPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDG-SLLAIASS  294 (323)
T ss_pred             ccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCC-CeEEEEec
Confidence            9999999999999999999999999999998878889999999999 68888763

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.96  E-value=3.9e-28  Score=198.89  Aligned_cols=258  Identities=21%  Similarity=0.321  Sum_probs=217.4

Q ss_pred             ccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEE
Q 042434          205 CGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLT  284 (517)
Q Consensus       205 ~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s  284 (517)
                      ....--++.-+.++.||++.|+....+.+...-|+++.|-+-+|||.-++..+   +++ .|..-|.+++|+.|.++|++
T Consensus        42 mlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdel---hsf-~hkhivk~~af~~ds~~llt  117 (334)
T KOG0278|consen   42 MLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDEL---HSF-EHKHIVKAVAFSQDSNYLLT  117 (334)
T ss_pred             hhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhh---hhh-hhhheeeeEEecccchhhhc
Confidence            34455567789999999999999999999999999999999999999877543   443 48889999999999999999


Q ss_pred             EeCCCeEEEEECCCCc-EEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCC-eeEeeeCcCCCceEEEEEc
Q 042434          285 CGNAEVLKLWDVETGI-CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGN-EIKAWRGTRIPKVLDLAVT  362 (517)
Q Consensus       285 ~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~  362 (517)
                      |+.+..++|+|++..+ +...+.+|.+.|..+.|....+.|++++.|++  |.+||..+. .+..+...+  +|+++.++
T Consensus       118 gg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~t--VRLWD~rTgt~v~sL~~~s--~VtSlEvs  193 (334)
T KOG0278|consen  118 GGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKT--VRLWDHRTGTEVQSLEFNS--PVTSLEVS  193 (334)
T ss_pred             cchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCc--eEEEEeccCcEEEEEecCC--CCcceeec
Confidence            9999999999997654 56678899999999999999999999999999  888888754 444444444  79999999


Q ss_pred             cCCCEEEEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceE
Q 042434          363 PDGENLISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYV  441 (517)
Q Consensus       363 ~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~  441 (517)
                      ++|+++.+ ...+.|.+||..+.. .........|.+.+++|+...+++|+.|..++.||..++........+|..+   
T Consensus       194 ~dG~ilTi-a~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gp---  269 (334)
T KOG0278|consen  194 QDGRILTI-AYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGP---  269 (334)
T ss_pred             cCCCEEEE-ecCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCc---
Confidence            99987655 466789999999877 6667778889999999999999999999999999999884444334677766   


Q ss_pred             EEeecCCCCCcEEEEecCCCcEEEEecCCCcee
Q 042434          442 IRSCFGGLDGTFIASGSENSQIYIWNRRNSKPI  474 (517)
Q Consensus       442 i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  474 (517)
                      +.++.|+|+|...++||+||+|++|....++.-
T Consensus       270 VhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  270 VHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             eEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence            666777999999999999999999998766543

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.8e-26  Score=195.64  Aligned_cols=288  Identities=20%  Similarity=0.266  Sum_probs=212.8

Q ss_pred             EEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCee--eEEEEeccCCCCEEEEEECCCCCeEEE-EeCCCeE
Q 042434          215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKL--TLKHTLRSHQNPVSFVAWSPDDTKLLT-CGNAEVL  291 (517)
Q Consensus       215 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~--~~~~~~~~h~~~v~~l~~s~~~~~l~s-~~~dg~i  291 (517)
                      +..|+||.+.|++++||.||++|||++.|++|+||++.+-...  +.++. .-.-+..+.+.|+||-+-++. +-...++
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~dhpT~V~FapDc~s~vv~~~~g~~l  157 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEYDHPTRVVFAPDCKSVVVSVKRGNKL  157 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhc-cccCCCceEEEECCCcceEEEEEccCCEE
Confidence            5578999999999999999999999999999999998532110  01110 111234678899999766554 4445589


Q ss_pred             EEEECCC---CcEEEE--------e-CCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEE
Q 042434          292 KLWDVET---GICKHT--------F-GDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDL  359 (517)
Q Consensus       292 ~iwd~~~---~~~~~~--------~-~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~  359 (517)
                      ++|.+..   |.....        | +.|...+..+-...++.+|++++.|..  |.+|+..|+.+..+..... .-+..
T Consensus       158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~--i~lw~lkGq~L~~idtnq~-~n~~a  234 (420)
T KOG2096|consen  158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTK--ICLWDLKGQLLQSIDTNQS-SNYDA  234 (420)
T ss_pred             EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCc--EEEEecCCceeeeeccccc-cccce
Confidence            9997642   221111        1 245666777777788999999999999  9999999888777665553 56678


Q ss_pred             EEccCCCEEEEEeCCCcEEEEECC---Cce-------EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc--
Q 042434          360 AVTPDGENLISVLSDKDIRILNLG---TYA-------ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWE--  427 (517)
Q Consensus       360 ~~~~~~~~l~~~~~dg~i~i~d~~---~~~-------~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~--  427 (517)
                      +.+|+|+++++++....|++|.+-   .+.       ....+|...|..++|+++...+++.+.||.+++||+.-...  
T Consensus       235 avSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~  314 (420)
T KOG2096|consen  235 AVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAG  314 (420)
T ss_pred             eeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecC
Confidence            999999999999999999999862   221       35567888999999999999999999999999999853211  


Q ss_pred             ----cceEE--eCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEec-CCCCCeeEEEecCCCCcEEEEe
Q 042434          428 ----KPFKY--TGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILS-GHSMTVNCVSWNPKRPKMLASA  500 (517)
Q Consensus       428 ----~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~l~s~  500 (517)
                          .....  .-+..+...++ +..+|+|..|+.+. ...+++|..++|+...++. .|...|.+++|+++| .+++|+
T Consensus       315 qDpk~Lk~g~~pl~aag~~p~R-L~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g-~~~atc  391 (420)
T KOG2096|consen  315 QDPKILKEGSAPLHAAGSEPVR-LELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDG-KYIATC  391 (420)
T ss_pred             CCchHhhcCCcchhhcCCCceE-EEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCC-cEEeee
Confidence                11111  12222333343 33489999888654 5679999999998776665 599999999999999 788888


Q ss_pred             eCCCcEEEeC
Q 042434          501 SDDHTIRIWG  510 (517)
Q Consensus       501 ~~dg~v~iw~  510 (517)
                      | |..+++..
T Consensus       392 G-dr~vrv~~  400 (420)
T KOG2096|consen  392 G-DRYVRVIR  400 (420)
T ss_pred             c-ceeeeeec
Confidence            7 55677765

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=9.4e-27  Score=216.69  Aligned_cols=257  Identities=23%  Similarity=0.278  Sum_probs=215.8

Q ss_pred             cccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEecc-CCCCEEEEEECCCCCeE
Q 042434          204 CCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRS-HQNPVSFVAWSPDDTKL  282 (517)
Q Consensus       204 ~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~-h~~~v~~l~~s~~~~~l  282 (517)
                      ...|+............+...|+++.|+++|.+||+|..+|.|.|||..+.   .....+.+ |...|.+++|.  +..+
T Consensus       199 vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~---k~~~~~~~~h~~rvg~laW~--~~~l  273 (484)
T KOG0305|consen  199 VYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQ---KKTRTLRGSHASRVGSLAWN--SSVL  273 (484)
T ss_pred             EEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhc---cccccccCCcCceeEEEecc--CceE
Confidence            344566666655555656999999999999999999999999999999654   34466677 99999999998  6789


Q ss_pred             EEEeCCCeEEEEECCCCcEEEE-eCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEE
Q 042434          283 LTCGNAEVLKLWDVETGICKHT-FGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAV  361 (517)
Q Consensus       283 ~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~  361 (517)
                      .+|+.|+.|..+|++..+.... +.+|...|..+.|++|+.++++|+.|+.  +.+||............|...|..++|
T Consensus       274 ssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~--~~Iwd~~~~~p~~~~~~H~aAVKA~aw  351 (484)
T KOG0305|consen  274 SSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNV--VFIWDGLSPEPKFTFTEHTAAVKALAW  351 (484)
T ss_pred             EEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccc--eEeccCCCccccEEEeccceeeeEeee
Confidence            9999999999999988776555 7889999999999999999999999999  888888665555555566679999999


Q ss_pred             ccC-CCEEEEEe--CCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEe--CCCeEEEEEcCCCCccceEEeCc
Q 042434          362 TPD-GENLISVL--SDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNL--NSQEIHMWDVAGKWEKPFKYTGH  435 (517)
Q Consensus       362 ~~~-~~~l~~~~--~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~  435 (517)
                      +|- ...||+|+  .|+.|++||..++. .........|.++.|++..+-++++.  .++.|.+|+..+. .....+.+|
T Consensus       352 cP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~-~~~~~l~gH  430 (484)
T KOG0305|consen  352 CPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM-KLVAELLGH  430 (484)
T ss_pred             CCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc-ceeeeecCC
Confidence            995 44777664  58999999999888 66777888999999999998887754  4678999999885 778888899


Q ss_pred             ccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCC
Q 042434          436 SQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS  471 (517)
Q Consensus       436 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  471 (517)
                      ...   +-.+.++|||..+++|+.|.++++|++-..
T Consensus       431 ~~R---Vl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  431 TSR---VLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             cce---eEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            876   445566999999999999999999998764

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=2.4e-26  Score=222.45  Aligned_cols=267  Identities=21%  Similarity=0.299  Sum_probs=217.7

Q ss_pred             cccccCCCcc-cccCCCcccEEE-eccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEE
Q 042434          196 AISLYEDHCC-GRDQIPTETVQI-LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFV  273 (517)
Q Consensus       196 ~~~~~~~~~~-~~~~~~~~~~~~-l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l  273 (517)
                      ....+.+... .|+..+...+.. +.||.+.|+++++..-+.+|++|+.|.+++|||..++   ....++.+|.+.|.++
T Consensus       221 ~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg---~C~~~l~gh~stv~~~  297 (537)
T KOG0274|consen  221 FKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG---ECTHSLQGHTSSVRCL  297 (537)
T ss_pred             EEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC---cEEEEecCCCceEEEE
Confidence            3344444444 788888888888 9999999999999877889999999999999998766   6678999999999999


Q ss_pred             EECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC-CeeEeeeCcC
Q 042434          274 AWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG-NEIKAWRGTR  352 (517)
Q Consensus       274 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~~  352 (517)
                      ...  +..+++|+.|.+|++|+++++.++..+.+|..+|.++..+  +.++++|+.|++  |.+|+... +.+..+.+ |
T Consensus       298 ~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~--v~VW~~~~~~cl~sl~g-H  370 (537)
T KOG0274|consen  298 TID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGT--VKVWDPRTGKCLKSLSG-H  370 (537)
T ss_pred             Ecc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCce--EEEEEhhhceeeeeecC-C
Confidence            875  4578889999999999999999999998899999999997  889999999998  77777764 55555665 6


Q ss_pred             CCceEEEEEccCCCEEEEEeCCCcEEEEECCCc-e--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccc
Q 042434          353 IPKVLDLAVTPDGENLISVLSDKDIRILNLGTY-A--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKP  429 (517)
Q Consensus       353 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~  429 (517)
                      ...|.++.+.+. ..+++|+.|++|++||+++. +  .....|..-+  -.+...++.+++++.|+.|++||...+ ...
T Consensus       371 ~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v--~~l~~~~~~Lvs~~aD~~Ik~WD~~~~-~~~  446 (537)
T KOG0274|consen  371 TGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLV--SSLLLRDNFLVSSSADGTIKLWDAEEG-ECL  446 (537)
T ss_pred             cceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccc--cccccccceeEeccccccEEEeecccC-cee
Confidence            679999988766 89999999999999999998 5  3333444444  334456789999999999999999887 666


Q ss_pred             eEEeCc-ccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCC
Q 042434          430 FKYTGH-SQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHS  481 (517)
Q Consensus       430 ~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~  481 (517)
                      ..+.+. ...   +.++.+.  ...+++++.||.+++||++++++...+-.+.
T Consensus       447 ~~~~~~~~~~---v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l~~~~  494 (537)
T KOG0274|consen  447 RTLEGRHVGG---VSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTLLSTD  494 (537)
T ss_pred             eeeccCCccc---EEEeecC--cceEEEEecCCeeEEEecccCchhhhhhhcc
Confidence            777663 343   4444322  4678999999999999999999888774443

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.95  E-value=7.6e-27  Score=207.49  Aligned_cols=260  Identities=19%  Similarity=0.321  Sum_probs=198.5

Q ss_pred             ccccCcEEEEEECC-CCCEEEEeeCCCcEEEEEecCCCee-------eEEEEeccCCCCEEEEEECCCC-CeEEEEeCCC
Q 042434          219 TEHKNEVWFVQFSN-NGEYLASSSSDCSAIIWKVLEDSKL-------TLKHTLRSHQNPVSFVAWSPDD-TKLLTCGNAE  289 (517)
Q Consensus       219 ~~h~~~v~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~~-------~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg  289 (517)
                      -.|.+.|+.+.+-| +...+|+++..+.|.|||..+....       .+...+.+|...-.+++|++.. -.|++++.|+
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~  200 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH  200 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence            35999999999999 5567788889999999998653322       2334788999988889999854 5789999999


Q ss_pred             eEEEEECCCCc-------EEEEeCCCCCceEEEEEeCC-CCeEEEeeCCCceeEEEEeCC--CCeeEeeeCcCCCceEEE
Q 042434          290 VLKLWDVETGI-------CKHTFGDHGFIVSSCAWFPD-SKRLVCGSSDTEKGIFMCDCD--GNEIKAWRGTRIPKVLDL  359 (517)
Q Consensus       290 ~i~iwd~~~~~-------~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~d~~v~i~~~~~~--~~~~~~~~~~~~~~i~~~  359 (517)
                      +|++||+....       ....+.+|...|..++|++- ...|++++.|+.  +.+||.+  ..+.......+.+.+.|+
T Consensus       201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~--L~iwD~R~~~~~~~~~~~ah~~~vn~~  278 (422)
T KOG0264|consen  201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGK--LMIWDTRSNTSKPSHSVKAHSAEVNCV  278 (422)
T ss_pred             cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCe--EEEEEcCCCCCCCcccccccCCceeEE
Confidence            99999996532       34567899999999999994 567888899998  8888988  444444555666789999


Q ss_pred             EEccCC-CEEEEEeCCCcEEEEECCCce---EEeeccCCCeeEEEEcCCC-CEEEEEeCCCeEEEEEcCCCCccceEEeC
Q 042434          360 AVTPDG-ENLISVLSDKDIRILNLGTYA---ERVISEEHPITSLSVSVDC-KNFIVNLNSQEIHMWDVAGKWEKPFKYTG  434 (517)
Q Consensus       360 ~~~~~~-~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~s~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~  434 (517)
                      +|+|-+ ..|++|+.|++|++||+++..   .....|...|..+.|+|.. ..+++++.|+.+.+||+..-....     
T Consensus       279 ~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq-----  353 (422)
T KOG0264|consen  279 AFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQ-----  353 (422)
T ss_pred             EeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccccccc-----
Confidence            999954 467788889999999988866   4556677788888888854 445666678888888874321100     


Q ss_pred             cccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCC
Q 042434          435 HSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPC  512 (517)
Q Consensus       435 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~  512 (517)
                                   +++      -..||        ..+++..-.||...|..+.|+|+.+..++|++.|+.+.||++.
T Consensus       354 -------------~~e------da~dg--------ppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  354 -------------SPE------DAEDG--------PPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             -------------Chh------hhccC--------CcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence                         000      01111        2345667778999999999999999999999999999999986

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=1.3e-26  Score=227.02  Aligned_cols=255  Identities=23%  Similarity=0.336  Sum_probs=207.0

Q ss_pred             cccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecC---------------CCeeeEEEEeccCCCCEEEEEEC
Q 042434          212 TETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLE---------------DSKLTLKHTLRSHQNPVSFVAWS  276 (517)
Q Consensus       212 ~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~---------------~~~~~~~~~~~~h~~~v~~l~~s  276 (517)
                      .+.+.....|.+.|+|+.|+|||++||+||.|+.|.||....               -+.++.+..+.+|.+.|..++|+
T Consensus        59 ~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws  138 (942)
T KOG0973|consen   59 PKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS  138 (942)
T ss_pred             chhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC
Confidence            456677788999999999999999999999999999999862               02356778899999999999999


Q ss_pred             CCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCee-EeeeC-----
Q 042434          277 PDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEI-KAWRG-----  350 (517)
Q Consensus       277 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~-~~~~~-----  350 (517)
                      |++.+|++++.|++|.|||..+.+.+..+.+|...|..+.|.|-|++|++-+.|++  +.+|+...-.+ +.+..     
T Consensus       139 p~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrt--ikvwrt~dw~i~k~It~pf~~~  216 (942)
T KOG0973|consen  139 PDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRT--LKVWRTSDWGIEKSITKPFEES  216 (942)
T ss_pred             CCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCce--EEEEEcccceeeEeeccchhhC
Confidence            99999999999999999999999999999999999999999999999999999999  66666543222 21111     


Q ss_pred             cCCCceEEEEEccCCCEEEEEeC----CCcEEEEECCCce--EEeeccCCCeeEEEEcCC-----CC------------E
Q 042434          351 TRIPKVLDLAVTPDGENLISVLS----DKDIRILNLGTYA--ERVISEEHPITSLSVSVD-----CK------------N  407 (517)
Q Consensus       351 ~~~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~-----~~------------~  407 (517)
                      .....+..+.|+|||.+|++...    -..+.|.+-.+.+  ....+|..++.++.|+|.     .+            .
T Consensus       217 ~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i  296 (942)
T KOG0973|consen  217 PLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCI  296 (942)
T ss_pred             CCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEE
Confidence            12235788999999999997643    3468888877776  678899999999999982     11            5


Q ss_pred             EEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCC
Q 042434          408 FIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS  471 (517)
Q Consensus       408 l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  471 (517)
                      +++|+.|++|.+|..... .+..  ..|.-....|.-+.|+|||..|+++|.||+|.++.+...
T Consensus       297 ~AvgSqDrSlSVW~T~~~-RPl~--vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  297 AAVGSQDRSLSVWNTALP-RPLF--VIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK  357 (942)
T ss_pred             EEEecCCccEEEEecCCC-Cchh--hhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence            788999999999998443 2222  222222334667778999999999999999999998753

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.95  E-value=6.1e-26  Score=207.86  Aligned_cols=294  Identities=21%  Similarity=0.306  Sum_probs=227.1

Q ss_pred             ccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCC--eEEE
Q 042434          207 RDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDT--KLLT  284 (517)
Q Consensus       207 ~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~--~l~s  284 (517)
                      ...+|..+...+.||++.|.|++..|.|.+||+|+.||+|+||.+.++..   +.++. ..+.|.|++|+|.+.  .||+
T Consensus       385 LrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRc---vr~~~-~d~~I~~vaw~P~~~~~vLAv  460 (733)
T KOG0650|consen  385 LRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRC---VRTVQ-FDSEIRSVAWNPLSDLCVLAV  460 (733)
T ss_pred             cCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceE---EEEEe-ecceeEEEEecCCCCceeEEE
Confidence            45677888999999999999999999999999999999999999987744   44443 356899999999764  3443


Q ss_pred             EeCCCeEEEEECCCC-------------------------------------cEEEEeCCCCCceEEEEEeCCCCeEEEe
Q 042434          285 CGNAEVLKLWDVETG-------------------------------------ICKHTFGDHGFIVSSCAWFPDSKRLVCG  327 (517)
Q Consensus       285 ~~~dg~i~iwd~~~~-------------------------------------~~~~~~~~~~~~v~~i~~~~~~~~l~~~  327 (517)
                      +- ...+.|-+..-|                                     .-++..-.|...|..+.|+..|.+|++.
T Consensus       461 A~-~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV  539 (733)
T KOG0650|consen  461 AV-GECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATV  539 (733)
T ss_pred             Ee-cCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEe
Confidence            32 223444332111                                     0012223577889999999999999997


Q ss_pred             eCC-CceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCC
Q 042434          328 SSD-TEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVD  404 (517)
Q Consensus       328 ~~d-~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~  404 (517)
                      ..+ +.-.|.+..+.......-.....+.+.++.|+|...++++++. ..|++||+....  .........+..++++|.
T Consensus       540 ~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~  618 (733)
T KOG0650|consen  540 MPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPN  618 (733)
T ss_pred             ccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCC
Confidence            664 3444777777654444433344468999999999998888765 569999998766  455566678999999999


Q ss_pred             CCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecC------CC---ceeE
Q 042434          405 CKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRR------NS---KPIE  475 (517)
Q Consensus       405 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~------~~---~~~~  475 (517)
                      |..+++++.|+.+..||+.-...+.+.+..|...   ++.+++++.-.++++|+.||++.|+.-.      ..   -++.
T Consensus       619 GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~a---vr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK  695 (733)
T KOG0650|consen  619 GDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKA---VRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLK  695 (733)
T ss_pred             CCeEEEecCCCeeEEEEcccCcchhHHhhhhhhh---hhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeee
Confidence            9999999999999999998765666777777665   6777789999999999999999998532      11   3677


Q ss_pred             EecCCCCC----eeEEEecCCCCcEEEEeeCCCcEEEeC
Q 042434          476 ILSGHSMT----VNCVSWNPKRPKMLASASDDHTIRIWG  510 (517)
Q Consensus       476 ~~~~h~~~----v~~v~~~~~~~~~l~s~~~dg~v~iw~  510 (517)
                      .+.+|...    |.++.|||..+ .|+|+|.||+|++|-
T Consensus       696 ~L~gH~~~~~~gVLd~~wHP~qp-WLfsAGAd~tirlfT  733 (733)
T KOG0650|consen  696 RLRGHEKTNDLGVLDTIWHPRQP-WLFSAGADGTIRLFT  733 (733)
T ss_pred             eccCceeecccceEeecccCCCc-eEEecCCCceEEeeC
Confidence            88898755    99999999995 899999999999983

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.95  E-value=2e-27  Score=201.95  Aligned_cols=275  Identities=15%  Similarity=0.230  Sum_probs=219.5

Q ss_pred             ccccccCCCCCc-cccccCCC-cccccCCCcccEEE--------eccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecC
Q 042434          184 QIDSCQYHNSSV-AISLYEDH-CCGRDQIPTETVQI--------LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLE  253 (517)
Q Consensus       184 q~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~--------l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~  253 (517)
                      ...+..|.|+.. .++.+-|+ +..|+...++..+-        +--|.++|.|+.||.|...||+|+.||.|+||.+.+
T Consensus       215 h~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~t  294 (508)
T KOG0275|consen  215 HVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIET  294 (508)
T ss_pred             chhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEec
Confidence            344556777666 44444444 44555555544333        345889999999999999999999999999999988


Q ss_pred             CCeeeEEEEec-cCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCc
Q 042434          254 DSKLTLKHTLR-SHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTE  332 (517)
Q Consensus       254 ~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~  332 (517)
                      +..   ++.+. .|+..|+|+.|+.|+..+++++.|.++++.-+.+|++++.|.+|...|+...|.+||..+++++.||+
T Consensus       295 G~C---lRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgt  371 (508)
T KOG0275|consen  295 GQC---LRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGT  371 (508)
T ss_pred             chH---HHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCcc
Confidence            843   34554 89999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEEEeCCC-CeeEeeeCcC-CCceEEEEEccCC-CEEEEEeCCCcEEEEECCCceEEee----ccCCCeeEEEEcCCC
Q 042434          333 KGIFMCDCDG-NEIKAWRGTR-IPKVLDLAVTPDG-ENLISVLSDKDIRILNLGTYAERVI----SEEHPITSLSVSVDC  405 (517)
Q Consensus       333 v~i~~~~~~~-~~~~~~~~~~-~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~i~~~~~s~~~  405 (517)
                        +.+|+..+ .++..+.... .-+|.++..-|.+ ..++++...+++++.++.......+    ..++...+.+++|.|
T Consensus       372 --vkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkG  449 (508)
T KOG0275|consen  372 --VKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKG  449 (508)
T ss_pred             --EEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCC
Confidence              77777764 4444444332 3367777777754 5888999999999999987653332    244567788999999


Q ss_pred             CEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEe
Q 042434          406 KNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWN  467 (517)
Q Consensus       406 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd  467 (517)
                      .++.+.+.|+.++.|...++ .....+..|......+   ..+|..+.+++-++||.+++|.
T Consensus       450 ewiYcigED~vlYCF~~~sG-~LE~tl~VhEkdvIGl---~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  450 EWIYCIGEDGVLYCFSVLSG-KLERTLPVHEKDVIGL---THHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             cEEEEEccCcEEEEEEeecC-ceeeeeeccccccccc---ccCcccchhhhhcccchhhhcC
Confidence            99999999999999999877 6666677776653333   3489999999999999999995

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.95  E-value=2.2e-26  Score=212.31  Aligned_cols=284  Identities=21%  Similarity=0.349  Sum_probs=217.5

Q ss_pred             EEECC---CCCEEEEeeCCCcEEEEEecCCCe---eeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcE
Q 042434          228 VQFSN---NGEYLASSSSDCSAIIWKVLEDSK---LTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGIC  301 (517)
Q Consensus       228 ~~~s~---~~~~l~t~~~dg~i~iw~~~~~~~---~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~  301 (517)
                      +.|++   ....||.+..||.|.++|.....-   ......+..|.+.|..+.|.|....|++++.|.++++||++++++
T Consensus        55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l  134 (720)
T KOG0321|consen   55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL  134 (720)
T ss_pred             ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence            55655   346899999999999999853211   012345678999999999999778999999999999999999988


Q ss_pred             EEE--eCCCCCceEEEEEeCC-CCeEEEeeCCCceeEEEEeCCCCeeEe-------e----eC----------------c
Q 042434          302 KHT--FGDHGFIVSSCAWFPD-SKRLVCGSSDTEKGIFMCDCDGNEIKA-------W----RG----------------T  351 (517)
Q Consensus       302 ~~~--~~~~~~~v~~i~~~~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~-------~----~~----------------~  351 (517)
                      ...  +.+|...|.+++|.|. ...|++|+.||.  +.+||++-+....       +    ..                .
T Consensus       135 ~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~--illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA  212 (720)
T KOG0321|consen  135 VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGE--ILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA  212 (720)
T ss_pred             ecceeecccccccchhhhccCCCcceeeccCCCc--EEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc
Confidence            876  7899999999999995 557889999999  6666654211000       0    00                1


Q ss_pred             CCCceEE---EEEccCCCEEEEEeC-CCcEEEEECCCceEEe----------ecc---CCCeeEEEEcCCCCEEEEEeCC
Q 042434          352 RIPKVLD---LAVTPDGENLISVLS-DKDIRILNLGTYAERV----------ISE---EHPITSLSVSVDCKNFIVNLNS  414 (517)
Q Consensus       352 ~~~~i~~---~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~----------~~~---~~~i~~~~~s~~~~~l~~~~~d  414 (517)
                      +...|.+   +.+..|...|++++. |+.|+|||++......          ..+   ...+.++.....|.++++.+.|
T Consensus       213 ~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD  292 (720)
T KOG0321|consen  213 ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTD  292 (720)
T ss_pred             ccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecC
Confidence            1123334   556678888888877 9999999998765111          111   2357788888889999999999


Q ss_pred             CeEEEEEcCCC-CccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCc-eeEEecCCCCCeeEEEecCC
Q 042434          415 QEIHMWDVAGK-WEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSK-PIEILSGHSMTVNCVSWNPK  492 (517)
Q Consensus       415 ~~i~~~d~~~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~v~~~~~  492 (517)
                      +.|++|++.+. ..+...+.++....+.+..+. +||+.++++|+.|...++|.+.+.+ ....+.+|.-.|++++|.|.
T Consensus       293 ~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~l-Spd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS  371 (720)
T KOG0321|consen  293 NSIYFYNMRSLSISPVAEFSGKLNSSFYVKSEL-SPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPS  371 (720)
T ss_pred             CcEEEEeccccCcCchhhccCcccceeeeeeec-CCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccc
Confidence            99999999764 244555666666666666655 8999999999999999999998764 56677899999999999987


Q ss_pred             CCcEEEEeeCCCcEEEeCCCCC
Q 042434          493 RPKMLASASDDHTIRIWGPCQS  514 (517)
Q Consensus       493 ~~~~l~s~~~dg~v~iw~~~~~  514 (517)
                      ...-++||++|..++||++..+
T Consensus       372 ~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  372 ATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             cCCCceeeccCcceEEEeccCc
Confidence            6556899999999999999765

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=4.6e-25  Score=214.23  Aligned_cols=225  Identities=16%  Similarity=0.093  Sum_probs=174.9

Q ss_pred             EeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCC-CCeEEEeeCCCceeEEEEeCCCC---------eeEeeeCcCCC
Q 042434          285 CGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPD-SKRLVCGSSDTEKGIFMCDCDGN---------EIKAWRGTRIP  354 (517)
Q Consensus       285 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~d~~v~i~~~~~~~~---------~~~~~~~~~~~  354 (517)
                      |+.++.+++|+......+..+.+|...|.+++|+|+ +.+|++|+.|+.  |.+|+....         .+..+ ..|..
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~Dgt--IrIWDi~t~~~~~~~i~~p~~~L-~gH~~  126 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLT--IRVWEIPHNDESVKEIKDPQCIL-KGHKK  126 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCe--EEEEECCCCCccccccccceEEe-ecCCC
Confidence            567889999999888888899999999999999997 789999999999  667776531         11222 34456


Q ss_pred             ceEEEEEccCCCEE-EEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEE
Q 042434          355 KVLDLAVTPDGENL-ISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKY  432 (517)
Q Consensus       355 ~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~  432 (517)
                      .|.+++|+|++..+ ++++.|+.|++||++++. .....+...+.+++|+|+|..+++++.|+.|++||++++ .....+
T Consensus       127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg-~~i~tl  205 (568)
T PTZ00420        127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ-EIASSF  205 (568)
T ss_pred             cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCC-cEEEEE
Confidence            89999999998764 688999999999999877 333446678999999999999999999999999999987 666778


Q ss_pred             eCcccCceE--EEeecCCCCCcEEEEecCCC----cEEEEecCC-CceeEEecC--CCCCeeEEEecCCCCcEEEEeeCC
Q 042434          433 TGHSQNKYV--IRSCFGGLDGTFIASGSENS----QIYIWNRRN-SKPIEILSG--HSMTVNCVSWNPKRPKMLASASDD  503 (517)
Q Consensus       433 ~~~~~~~~~--i~~~~~s~~~~~l~~~~~dg----~i~iwd~~~-~~~~~~~~~--h~~~v~~v~~~~~~~~~l~s~~~d  503 (517)
                      .+|......  +....+++++.+|++++.|+    .|++||+++ ++++..+..  +.+.+......+++ .++++|+.|
T Consensus       206 ~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg-~l~lsGkGD  284 (568)
T PTZ00420        206 HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTG-LIYLIGKGD  284 (568)
T ss_pred             ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCC-CEEEEEECC
Confidence            888765322  22223468889999988774    799999985 566665543  23333333334456 789999999


Q ss_pred             CcEEEeCCCCC
Q 042434          504 HTIRIWGPCQS  514 (517)
Q Consensus       504 g~v~iw~~~~~  514 (517)
                      ++|++|++..+
T Consensus       285 ~tIr~~e~~~~  295 (568)
T PTZ00420        285 GNCRYYQHSLG  295 (568)
T ss_pred             CeEEEEEccCC
Confidence            99999999765

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.95  E-value=7.2e-26  Score=199.68  Aligned_cols=257  Identities=18%  Similarity=0.227  Sum_probs=213.3

Q ss_pred             cccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEE
Q 042434          204 CCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLL  283 (517)
Q Consensus       204 ~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~  283 (517)
                      ...++....+.+..++||.-.|+.+.|+|+...+++++.|..|+||......   .......|..+|+.+..+|.|.||+
T Consensus       243 av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s---~~~~~~~h~~~V~~ls~h~tgeYll  319 (506)
T KOG0289|consen  243 AVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS---EPTSSRPHEEPVTGLSLHPTGEYLL  319 (506)
T ss_pred             eEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc---CccccccccccceeeeeccCCcEEE
Confidence            3445666778899999999999999999999999999999999999986553   3355678999999999999999999


Q ss_pred             EEeCCCeEEEEECCCCcEEEEeCC--CCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEE
Q 042434          284 TCGNAEVLKLWDVETGICKHTFGD--HGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAV  361 (517)
Q Consensus       284 s~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~  361 (517)
                      +++.||+..+.|+++|.++.....  ..-.+++.+|+|||..|.+|+.||.  +.+||+.......-...|.++|..++|
T Consensus       320 sAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~--vkiwdlks~~~~a~Fpght~~vk~i~F  397 (506)
T KOG0289|consen  320 SASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGV--VKIWDLKSQTNVAKFPGHTGPVKAISF  397 (506)
T ss_pred             EecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCce--EEEEEcCCccccccCCCCCCceeEEEe
Confidence            999999999999999998876644  3456899999999999999999999  778888765544444457789999999


Q ss_pred             ccCCCEEEEEeCCCcEEEEECCCce---EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcC-CCCccceEEeCccc
Q 042434          362 TPDGENLISVLSDKDIRILNLGTYA---ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVA-GKWEKPFKYTGHSQ  437 (517)
Q Consensus       362 ~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~-~~~~~~~~~~~~~~  437 (517)
                      +.+|-++++++.|+.|++||++..+   ........++.++.|.+.|.+++.++.+=.|++++-. ..|.....+..|.+
T Consensus       398 sENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg  477 (506)
T KOG0289|consen  398 SENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSG  477 (506)
T ss_pred             ccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhccc
Confidence            9999999999999999999999876   3333445579999999999999999777777777743 34566666666664


Q ss_pred             CceEEEeecCCCCCcEEEEecCCCcEEEEec
Q 042434          438 NKYVIRSCFGGLDGTFIASGSENSQIYIWNR  468 (517)
Q Consensus       438 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~  468 (517)
                      .   ...+.|.....++++++.|..++++.+
T Consensus       478 ~---st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  478 L---STGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             c---cceeeecccceEEeeccchhheEEeec
Confidence            3   345556788899999999999888754

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.95  E-value=2.2e-26  Score=206.46  Aligned_cols=282  Identities=16%  Similarity=0.185  Sum_probs=231.6

Q ss_pred             cccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEecc--CCCCEEEEEECCCCCeEEEEeCCCeEEEEECC
Q 042434          220 EHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRS--HQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVE  297 (517)
Q Consensus       220 ~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~--h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~  297 (517)
                      .|..-|.++.+|...+++.||+. |.|+|||+.......++..+..  ..+.|.++...|||+.|++|+.-.++.|||+.
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA  495 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA  495 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence            58999999999999999999986 7899999965443334443332  35789999999999999999999999999997


Q ss_pred             CCcEEE--EeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCC
Q 042434          298 TGICKH--TFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDK  375 (517)
Q Consensus       298 ~~~~~~--~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  375 (517)
                      ......  .+....-...+++.+||.+..+++..||.  |.+||+.++.+.....++...+.|+.+++||..|.+|+-|.
T Consensus       496 apTprikaeltssapaCyALa~spDakvcFsccsdGn--I~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDn  573 (705)
T KOG0639|consen  496 APTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGN--IAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDN  573 (705)
T ss_pred             CCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCc--EEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCcc
Confidence            665432  33333456778999999999999999999  88999998776655555657899999999999999999999


Q ss_pred             cEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEE
Q 042434          376 DIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFI  454 (517)
Q Consensus       376 ~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  454 (517)
                      +|+.||++++. .........|.++..+|++.++++|..++.+.+......  ....+.-|..   ++-++.|.+-|+++
T Consensus       574 tvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp--~kyqlhlheS---cVLSlKFa~cGkwf  648 (705)
T KOG0639|consen  574 TVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP--EKYQLHLHES---CVLSLKFAYCGKWF  648 (705)
T ss_pred             ceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCc--cceeeccccc---EEEEEEecccCcee
Confidence            99999999887 445556678999999999999999999999988887543  2233333333   35556668999999


Q ss_pred             EEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCC
Q 042434          455 ASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGP  511 (517)
Q Consensus       455 ~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~  511 (517)
                      ++.+.|.-+..|...-|..+...+ ..+.|.++..+.|. ++++|||.|....+|.+
T Consensus       649 vStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~dd-kyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  649 VSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDD-KYIVTGSGDKKATVYEV  703 (705)
T ss_pred             eecCchhhhhhccCccccceeecc-ccCcceeeeeccCc-eEEEecCCCcceEEEEE
Confidence            999999999999999898888776 46789999999998 79999999998888865

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.5e-25  Score=199.28  Aligned_cols=286  Identities=15%  Similarity=0.178  Sum_probs=224.8

Q ss_pred             ccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCC-eEEEEeCCCeEEEEECCCC
Q 042434          221 HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDT-KLLTCGNAEVLKLWDVETG  299 (517)
Q Consensus       221 h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~  299 (517)
                      ..+.|+++.|+|....|.+|+.||+++||.++.. ....+..+.--..+|.+.+|.|+|. .+++++....+..||+.+.
T Consensus       212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk-~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a  290 (514)
T KOG2055|consen  212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGK-VNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA  290 (514)
T ss_pred             CcCCceEEEecCCCceEEEecCCCcEEEEEecCc-cChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccc
Confidence            3578999999999999999999999999999643 3345566666788999999999998 8899999999999999988


Q ss_pred             cEEEE--eCCC-CCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeE-eeeCcCCCceEEEEEccCCCEEEEEeCCC
Q 042434          300 ICKHT--FGDH-GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIK-AWRGTRIPKVLDLAVTPDGENLISVLSDK  375 (517)
Q Consensus       300 ~~~~~--~~~~-~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  375 (517)
                      +..+.  ..++ ...+.....++++++|+..+..|.  |.+....++... .+...  +.|..++|+.+++.|++++.+|
T Consensus       291 k~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~--I~lLhakT~eli~s~Kie--G~v~~~~fsSdsk~l~~~~~~G  366 (514)
T KOG2055|consen  291 KVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGH--IHLLHAKTKELITSFKIE--GVVSDFTFSSDSKELLASGGTG  366 (514)
T ss_pred             ccccccCCCCcccchhheeEecCCCCeEEEcccCce--EEeehhhhhhhhheeeec--cEEeeEEEecCCcEEEEEcCCc
Confidence            75442  2233 345677788999999999999999  776666554432 23222  4799999999999999999999


Q ss_pred             cEEEEECCCce-EEeeccCC--CeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC--CccceEEeCcccCceEEEeecCCCC
Q 042434          376 DIRILNLGTYA-ERVISEEH--PITSLSVSVDCKNFIVNLNSQEIHMWDVAGK--WEKPFKYTGHSQNKYVIRSCFGGLD  450 (517)
Q Consensus       376 ~i~i~d~~~~~-~~~~~~~~--~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~--~~~~~~~~~~~~~~~~i~~~~~s~~  450 (517)
                      .|.+||++... .......+  .-++++.++++.++++|+..|.|.|||..+.  ...+........-.+.|+.+.|++|
T Consensus       367 eV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d  446 (514)
T KOG2055|consen  367 EVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHD  446 (514)
T ss_pred             eEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcc
Confidence            99999999987 33333333  4577888899999999999999999997542  1122223333344566888899999


Q ss_pred             CcEEEEecC--CCcEEEEecCCCceeEEecCC---CCCeeEEEecCCCCcEEEEeeCCCcEEEeCCC
Q 042434          451 GTFIASGSE--NSQIYIWNRRNSKPIEILSGH---SMTVNCVSWNPKRPKMLASASDDHTIRIWGPC  512 (517)
Q Consensus       451 ~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~h---~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~  512 (517)
                      +..||.+|.  +..+++-.+.+......++..   -+.|+|++|+|.+ .++|.|..+|.|.+|.+.
T Consensus       447 ~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~s-G~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  447 AQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNS-GYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             hhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCC-ceEEeecCCCceeeEeec
Confidence            999988875  568999998877766666543   3578999999998 699999999999999875

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.95  E-value=4.7e-27  Score=205.88  Aligned_cols=260  Identities=17%  Similarity=0.245  Sum_probs=211.8

Q ss_pred             cccccCCCcccccCCCcc--cEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEE
Q 042434          196 AISLYEDHCCGRDQIPTE--TVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFV  273 (517)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~--~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l  273 (517)
                      +...++..+..|+..+.+  .+.+|.|..++|+++.|.++++++++++.|+.+++|++...   ....++.+|++.|+++
T Consensus       191 atgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~---r~~~TLsGHtdkVt~a  267 (459)
T KOG0288|consen  191 ATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSL---RLRHTLSGHTDKVTAA  267 (459)
T ss_pred             hhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccch---hhhhhhcccccceeee
Confidence            344444455566666665  78889999999999999999999999999999999999544   6778999999999999


Q ss_pred             EECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCC
Q 042434          274 AWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRI  353 (517)
Q Consensus       274 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~  353 (517)
                      .|......+++|+.|.+|++||+....|.+++ -....+..|..+  ...+++|-.|++  |..||.++.........+ 
T Consensus       268 k~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~-l~~S~cnDI~~~--~~~~~SgH~Dkk--vRfwD~Rs~~~~~sv~~g-  341 (459)
T KOG0288|consen  268 KFKLSHSRVVSGSADRTIKLWDLQKAYCSKTV-LPGSQCNDIVCS--ISDVISGHFDKK--VRFWDIRSADKTRSVPLG-  341 (459)
T ss_pred             hhhccccceeeccccchhhhhhhhhhheeccc-cccccccceEec--ceeeeecccccc--eEEEeccCCceeeEeecC-
Confidence            99988777999999999999999999888876 334445556555  567889999999  888997754443333333 


Q ss_pred             CceEEEEEccCCCEEEEEeCCCcEEEEECCCceEE-e-----eccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc
Q 042434          354 PKVLDLAVTPDGENLISVLSDKDIRILNLGTYAER-V-----ISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWE  427 (517)
Q Consensus       354 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~-----~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~  427 (517)
                      +.|+++..++++..+++++.|.++.+.|+++.... .     +...+..+.+.|||++.|+++|+.||.|++|++.++ +
T Consensus       342 g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg-K  420 (459)
T KOG0288|consen  342 GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG-K  420 (459)
T ss_pred             cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc-e
Confidence            38999999999999999999999999999998722 2     123446899999999999999999999999999887 5


Q ss_pred             cceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEE
Q 042434          428 KPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIW  466 (517)
Q Consensus       428 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw  466 (517)
                      ....+.....+ ..|.++.|+|.|.++++++.++.+.+|
T Consensus       421 lE~~l~~s~s~-~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  421 LEKVLSLSTSN-AAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             EEEEeccCCCC-cceEEEEEcCCCchhhcccCCcceEec
Confidence            55555443332 257888889999999999999999999

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.95  E-value=2.5e-26  Score=194.11  Aligned_cols=250  Identities=20%  Similarity=0.308  Sum_probs=194.2

Q ss_pred             EEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCC------------C------cEEEEeCCCCCceEEEEEeCCCC
Q 042434          261 HTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVET------------G------ICKHTFGDHGFIVSSCAWFPDSK  322 (517)
Q Consensus       261 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~------------~------~~~~~~~~~~~~v~~i~~~~~~~  322 (517)
                      ..+..|..++.+.+|+|||.++++|+.|..|+|.|++.            |      -.++++-.|...|.++.|+|...
T Consensus       106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~  185 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET  185 (430)
T ss_pred             EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence            45678999999999999999999999999999999861            1      24567778999999999999999


Q ss_pred             eEEEeeCCCceeEEEEeCCC----CeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceEE-----eeccC
Q 042434          323 RLVCGSSDTEKGIFMCDCDG----NEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAER-----VISEE  393 (517)
Q Consensus       323 ~l~~~~~d~~v~i~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----~~~~~  393 (517)
                      .|++|+.|++  |.++|...    +..+.+...+  +|.++.|+|.|.++++|.....+++||+.+.+..     ...|.
T Consensus       186 ILiS~srD~t--vKlFDfsK~saKrA~K~~qd~~--~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht  261 (430)
T KOG0640|consen  186 ILISGSRDNT--VKLFDFSKTSAKRAFKVFQDTE--PVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHT  261 (430)
T ss_pred             eEEeccCCCe--EEEEecccHHHHHHHHHhhccc--eeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccc
Confidence            9999999999  55555443    2223333333  7999999999999999999999999999998732     23567


Q ss_pred             CCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCce
Q 042434          394 HPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKP  473 (517)
Q Consensus       394 ~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  473 (517)
                      ..|+++.+++.++..++++.||.|++||--.. ..+..+... .+...+.+..|..+|+|+++.+.|..+++|.+.++++
T Consensus       262 ~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~-rCv~t~~~A-H~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~  339 (430)
T KOG0640|consen  262 GAITQVRYSSTGSLYVTASKDGAIKLWDGVSN-RCVRTIGNA-HGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRM  339 (430)
T ss_pred             cceeEEEecCCccEEEEeccCCcEEeeccccH-HHHHHHHhh-cCCceeeeEEEccCCeEEeecCCcceeeeeeecCCce
Confidence            78999999999999999999999999997655 444444322 2233466777799999999999999999999999999


Q ss_pred             eEEecCCC-----CCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434          474 IEILSGHS-----MTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSE  516 (517)
Q Consensus       474 ~~~~~~h~-----~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~  516 (517)
                      +..+.|-.     .--+...|+......|.---..+.+.-||.+++.+
T Consensus       340 l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr  387 (430)
T KOG0640|consen  340 LKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADR  387 (430)
T ss_pred             EEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhh
Confidence            99887531     11234556665533333333456677788776543

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=3.9e-26  Score=204.56  Aligned_cols=252  Identities=18%  Similarity=0.284  Sum_probs=202.5

Q ss_pred             ccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCC-CeEEEE
Q 042434          207 RDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDD-TKLLTC  285 (517)
Q Consensus       207 ~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~  285 (517)
                      +........+++......|+++.|-.||++||+|...|.|+|+|..+   -..+..+.+|+.+|..+.|+|++ ..+++|
T Consensus        53 y~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~---r~iLR~~~ah~apv~~~~f~~~d~t~l~s~  129 (487)
T KOG0310|consen   53 YSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS---RVILRQLYAHQAPVHVTKFSPQDNTMLVSG  129 (487)
T ss_pred             EecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc---HHHHHHHhhccCceeEEEecccCCeEEEec
Confidence            34444556666778899999999999999999999999999999643   23456788999999999999965 567788


Q ss_pred             eCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCC-CCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccC
Q 042434          286 GNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPD-SKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPD  364 (517)
Q Consensus       286 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  364 (517)
                      +.|+.+++||+.+......+.+|+..|.|.+|+|. +..+++|+.||.  |..||.+..........+..+|..+.+-|.
T Consensus       130 sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~--vrl~DtR~~~~~v~elnhg~pVe~vl~lps  207 (487)
T KOG0310|consen  130 SDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGK--VRLWDTRSLTSRVVELNHGCPVESVLALPS  207 (487)
T ss_pred             CCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCce--EEEEEeccCCceeEEecCCCceeeEEEcCC
Confidence            88999999999999876688999999999999995 558999999999  677777654333344444458999999999


Q ss_pred             CCEEEEEeCCCcEEEEECCCce---EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceE
Q 042434          365 GENLISVLSDKDIRILNLGTYA---ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYV  441 (517)
Q Consensus       365 ~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~  441 (517)
                      |..+++++. ..+++||+.++.   .....|...|+|+.+..++..|++++-|+.+++||+.+- +.+..+.-.. +   
T Consensus       208 gs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~-Kvv~s~~~~~-p---  281 (487)
T KOG0310|consen  208 GSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY-KVVHSWKYPG-P---  281 (487)
T ss_pred             CCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccce-EEEEeeeccc-c---
Confidence            999988764 569999998655   233448889999999999999999999999999996443 5554444322 2   


Q ss_pred             EEeecCCCCCcEEEEecCCCcEEEEecC
Q 042434          442 IRSCFGGLDGTFIASGSENSQIYIWNRR  469 (517)
Q Consensus       442 i~~~~~s~~~~~l~~~~~dg~i~iwd~~  469 (517)
                      +-.+..+|++..++.|..||.+.+-+..
T Consensus       282 vLsiavs~dd~t~viGmsnGlv~~rr~~  309 (487)
T KOG0310|consen  282 VLSIAVSPDDQTVVIGMSNGLVSIRRRE  309 (487)
T ss_pred             eeeEEecCCCceEEEecccceeeeehhh
Confidence            5556668999999999999988777543

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.95  E-value=3.2e-24  Score=200.49  Aligned_cols=271  Identities=14%  Similarity=0.122  Sum_probs=196.6

Q ss_pred             CCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeE-EEEeCCCeEEEEECCCCcEEEEeCCCCCce
Q 042434          234 GEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKL-LTCGNAEVLKLWDVETGICKHTFGDHGFIV  312 (517)
Q Consensus       234 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v  312 (517)
                      +..+++++.|+.+++||..++.   ....+..+. .+.+++|+|+++.+ ++++.++.|++||..+++....+..+.. +
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~---~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~   75 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLE---VTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-P   75 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCc---eEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-c
Confidence            3578899999999999997653   345555443 46789999999876 5667889999999999988877755433 5


Q ss_pred             EEEEEeCCCCeEEEe-eCCCceeEEEEeCCCCee-EeeeCcCCCceEEEEEccCCCEEEEEeCCC-cEEEEECCCceE-E
Q 042434          313 SSCAWFPDSKRLVCG-SSDTEKGIFMCDCDGNEI-KAWRGTRIPKVLDLAVTPDGENLISVLSDK-DIRILNLGTYAE-R  388 (517)
Q Consensus       313 ~~i~~~~~~~~l~~~-~~d~~v~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~-~  388 (517)
                      ..++|+|+++.++++ +.++.  ++.||..+... ..+...  ..+.+++|+|++..+++++.++ .+.+||..+... .
T Consensus        76 ~~~~~~~~g~~l~~~~~~~~~--l~~~d~~~~~~~~~~~~~--~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~  151 (300)
T TIGR03866        76 ELFALHPNGKILYIANEDDNL--VTVIDIETRKVLAEIPVG--VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVD  151 (300)
T ss_pred             cEEEECCCCCEEEEEcCCCCe--EEEEECCCCeEEeEeeCC--CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEE
Confidence            678999999977665 45777  88889876443 333322  2467899999999999888775 467789887662 2


Q ss_pred             eeccCCCeeEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCccceEEeCccc----CceEEEeecCCCCCcEEEE-ecCCCc
Q 042434          389 VISEEHPITSLSVSVDCKNFIVNL-NSQEIHMWDVAGKWEKPFKYTGHSQ----NKYVIRSCFGGLDGTFIAS-GSENSQ  462 (517)
Q Consensus       389 ~~~~~~~i~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~----~~~~i~~~~~s~~~~~l~~-~~~dg~  462 (517)
                      .......+..++|+|+++.+++++ .++.|.+||+.+. .....+..+..    .......+.++|+++++++ .+.++.
T Consensus       152 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~  230 (300)
T TIGR03866       152 NVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATR-KVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANR  230 (300)
T ss_pred             EEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc-eeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCe
Confidence            233445567899999999886654 5899999999876 33333322111    0111122445899998654 345678


Q ss_pred             EEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEe-eCCCcEEEeCCCCCCC
Q 042434          463 IYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASA-SDDHTIRIWGPCQSSE  516 (517)
Q Consensus       463 i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~-~~dg~v~iw~~~~~~~  516 (517)
                      +.+||+.+++.+..+. +...+.+++|+|++ ..|+++ +.+|.|++||+.+++.
T Consensus       231 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g-~~l~~~~~~~~~i~v~d~~~~~~  283 (300)
T TIGR03866       231 VAVVDAKTYEVLDYLL-VGQRVWQLAFTPDE-KYLLTTNGVSNDVSVIDVAALKV  283 (300)
T ss_pred             EEEEECCCCcEEEEEE-eCCCcceEEECCCC-CEEEEEcCCCCeEEEEECCCCcE
Confidence            9999999988876654 45679999999999 566654 6799999999998764

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.95  E-value=5.2e-25  Score=209.30  Aligned_cols=319  Identities=18%  Similarity=0.231  Sum_probs=249.9

Q ss_pred             hccccccCCCCCc--cccccCCCcccccCCCcccEEEeccccCcEEEEEECCCCC-EEEEeeCCCcEEEEEecCCCeeeE
Q 042434          183 SQIDSCQYHNSSV--AISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGE-YLASSSSDCSAIIWKVLEDSKLTL  259 (517)
Q Consensus       183 ~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~~~~~~  259 (517)
                      .++++|.-.|...  ++++.++.....+.-..+.+..++.-.+.|+.++|..||+ .+|+|+..|.+.+||++....  .
T Consensus       203 s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl--~  280 (910)
T KOG1539|consen  203 SRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKL--I  280 (910)
T ss_pred             cceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCee--e
Confidence            4555555555444  6667777777677667778888886579999999999997 567777889999999974422  2


Q ss_pred             EEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc----EEEE-------------------------------
Q 042434          260 KHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI----CKHT-------------------------------  304 (517)
Q Consensus       260 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~----~~~~-------------------------------  304 (517)
                      ......|.+.|....|.|....+++++.|..+++|=.+++.    .++.                               
T Consensus       281 ~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r  360 (910)
T KOG1539|consen  281 NVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLR  360 (910)
T ss_pred             eeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchh
Confidence            23334677788888888887888888888777766332110    0000                               


Q ss_pred             ------------------------------------------------------------------------------e-
Q 042434          305 ------------------------------------------------------------------------------F-  305 (517)
Q Consensus       305 ------------------------------------------------------------------------------~-  305 (517)
                                                                                                    + 
T Consensus       361 ~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~  440 (910)
T KOG1539|consen  361 SFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLD  440 (910)
T ss_pred             hhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEec
Confidence                                                                                          0 


Q ss_pred             ----CCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeee---CcCCCceEEEEEccCCCEEEEEeCCCcEE
Q 042434          306 ----GDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWR---GTRIPKVLDLAVTPDGENLISVLSDKDIR  378 (517)
Q Consensus       306 ----~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  378 (517)
                          +.....+++++.++.|++.+.|+..|.  |-.+++..+..+.-.   ..+.++|+.++...-++.+++++.+|.+.
T Consensus       441 ~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~--Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilk  518 (910)
T KOG1539|consen  441 PKRFKKDDINATAVCVSFCGNFVFIGYSKGT--IDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILK  518 (910)
T ss_pred             CccccccCcceEEEEEeccCceEEEeccCCe--EEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEE
Confidence                001255778888888888888888888  777777755544333   35567899999999999999999999999


Q ss_pred             EEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEe
Q 042434          379 ILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASG  457 (517)
Q Consensus       379 i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  457 (517)
                      +||..+.. .........+..+..+.....++++..|-.|.++|..+. ..++.+.+|...   ++...|||||++|+++
T Consensus       519 fw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~-kvvR~f~gh~nr---itd~~FS~DgrWlisa  594 (910)
T KOG1539|consen  519 FWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTR-KVVREFWGHGNR---ITDMTFSPDGRWLISA  594 (910)
T ss_pred             EEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhh-hhhHHhhccccc---eeeeEeCCCCcEEEEe
Confidence            99999877 555667788999999999999999999999999999887 788899999887   6677779999999999


Q ss_pred             cCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCC-CcEEEeCC
Q 042434          458 SENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDD-HTIRIWGP  511 (517)
Q Consensus       458 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~d-g~v~iw~~  511 (517)
                      +.|++|++||+.++.++-.+. -..+++++.|+|+| .+|||...| .-|++|.-
T Consensus       595 smD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPng-D~LAT~Hvd~~gIylWsN  647 (910)
T KOG1539|consen  595 SMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNG-DFLATVHVDQNGIYLWSN  647 (910)
T ss_pred             ecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCC-CEEEEEEecCceEEEEEc
Confidence            999999999999999998876 46889999999999 799999988 67999963

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=7.3e-25  Score=210.62  Aligned_cols=274  Identities=18%  Similarity=0.251  Sum_probs=215.2

Q ss_pred             ccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCC
Q 042434          219 TEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVET  298 (517)
Q Consensus       219 ~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~  298 (517)
                      .+|++.-+.++|.|+|.+|++++.||.|++|+.....  ....++..+...|.+++..  +.+|++|+.+++|.+|.+.+
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~--e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps   85 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDE--EEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPS   85 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcc--cCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCC
Confidence            4699999999999999999999999999999986552  1112333377778887764  56999999999999999999


Q ss_pred             CcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEE
Q 042434          299 GICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIR  378 (517)
Q Consensus       299 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  378 (517)
                      ++.-..+.....++.+++++.+|++++.|+.|-.  |.+.+............+.++|.++.++|.+++|++.+.||.|+
T Consensus        86 ~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~--vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~  163 (933)
T KOG1274|consen   86 GEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTA--VKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQ  163 (933)
T ss_pred             CCccceeeeeeccceEEEEecCCcEEEeecCcee--EEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEE
Confidence            8876666677889999999999999999999988  66666654433333444557999999999999999999999999


Q ss_pred             EEECCCceEE-ee---------ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCC
Q 042434          379 ILNLGTYAER-VI---------SEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGG  448 (517)
Q Consensus       379 i~d~~~~~~~-~~---------~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s  448 (517)
                      +||+.++... ..         .....+..++|+|+|..+++...|+.|++|+..+. .....+........ +..+.|+
T Consensus       164 iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~w-e~~f~Lr~~~~ss~-~~~~~ws  241 (933)
T KOG1274|consen  164 IWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGW-ELQFKLRDKLSSSK-FSDLQWS  241 (933)
T ss_pred             EEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCc-eeheeecccccccc-eEEEEEc
Confidence            9999887611 11         11345778999999999999999999999997654 66666665444333 6677889


Q ss_pred             CCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCc
Q 042434          449 LDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHT  505 (517)
Q Consensus       449 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~  505 (517)
                      |+|.|||+++.||.|.|||+.+...    ......|.+++|.|+.+ .+-.-..-|.
T Consensus       242 PnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n-~it~~~~~g~  293 (933)
T KOG1274|consen  242 PNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNAN-AITLITALGT  293 (933)
T ss_pred             CCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCC-eeEEEeeccc
Confidence            9999999999999999999998222    22357899999999984 4433333333

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.94  E-value=5.3e-25  Score=184.85  Aligned_cols=288  Identities=19%  Similarity=0.292  Sum_probs=222.3

Q ss_pred             eccccCcEEEEEECC-CCCEEEEeeCCCcEEEEEecCCCeee------------EEEEeccCCCCEEEEEECC-CCCeEE
Q 042434          218 LTEHKNEVWFVQFSN-NGEYLASSSSDCSAIIWKVLEDSKLT------------LKHTLRSHQNPVSFVAWSP-DDTKLL  283 (517)
Q Consensus       218 l~~h~~~v~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~~~------------~~~~~~~h~~~v~~l~~s~-~~~~l~  283 (517)
                      ...|.+.|+++...+ .|+|+++|+.||.|.|||++.....+            ....-.+|.-.|.++.|-| |...+.
T Consensus        39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt  118 (397)
T KOG4283|consen   39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT  118 (397)
T ss_pred             eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence            345999999999988 79999999999999999997543111            0111246788999999999 556788


Q ss_pred             EEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCC---CCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEE
Q 042434          284 TCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPD---SKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLA  360 (517)
Q Consensus       284 s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~---~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~  360 (517)
                      +++.|.+++|||..+-+....| ...+.|.+-+++|-   .-++++|..+-.  |.+.|+..........+|.+.|.++.
T Consensus       119 ssSFDhtlKVWDtnTlQ~a~~F-~me~~VYshamSp~a~sHcLiA~gtr~~~--VrLCDi~SGs~sH~LsGHr~~vlaV~  195 (397)
T KOG4283|consen  119 SSSFDHTLKVWDTNTLQEAVDF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQ--VRLCDIASGSFSHTLSGHRDGVLAVE  195 (397)
T ss_pred             cccccceEEEeecccceeeEEe-ecCceeehhhcChhhhcceEEEEecCCCc--EEEEeccCCcceeeeccccCceEEEE
Confidence            8899999999999998888887 45677888889883   336677777766  88888886665555555557999999


Q ss_pred             EccCCCE-EEEEeCCCcEEEEECCCce-----------------EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEc
Q 042434          361 VTPDGEN-LISVLSDKDIRILNLGTYA-----------------ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDV  422 (517)
Q Consensus       361 ~~~~~~~-l~~~~~dg~i~i~d~~~~~-----------------~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~  422 (517)
                      |+|...+ |++|+.||.|++||++...                 .....|.+.+..++|+.++.++++++.|..+++|+.
T Consensus       196 Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~  275 (397)
T KOG4283|consen  196 WSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNM  275 (397)
T ss_pred             eccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeec
Confidence            9998885 6789999999999997542                 113346668999999999999999999999999999


Q ss_pred             CCCCccceEEeC--ccc---CceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEE
Q 042434          423 AGKWEKPFKYTG--HSQ---NKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKML  497 (517)
Q Consensus       423 ~~~~~~~~~~~~--~~~---~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l  497 (517)
                      ..+......+..  |..   ....+.    +.+...++---.++.+.++++-.|..+..+..|-..|.+.++.|+- ...
T Consensus       276 ~~G~ntl~~~g~~~~n~~~~~~~~~~----~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~f-q~~  350 (397)
T KOG4283|consen  276 ESGRNTLREFGPIIHNQTTSFAVHIQ----SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDF-EQC  350 (397)
T ss_pred             ccCcccccccccccccccccceEEEe----ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCch-hhh
Confidence            776444333321  111   111122    2233344444456899999999999999999999999999999998 688


Q ss_pred             EEeeCCCcEEEeCCCC
Q 042434          498 ASASDDHTIRIWGPCQ  513 (517)
Q Consensus       498 ~s~~~dg~v~iw~~~~  513 (517)
                      .+|+.|+.|..|-+.-
T Consensus       351 ~tg~~d~ni~~w~p~l  366 (397)
T KOG4283|consen  351 FTGDMNGNIYMWSPAL  366 (397)
T ss_pred             hccccCCccccccccc
Confidence            9999999999998743

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=3.4e-24  Score=173.31  Aligned_cols=252  Identities=18%  Similarity=0.206  Sum_probs=197.0

Q ss_pred             cccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCC--eeeEEEEeccCCCCEEEEEECCC----CCeEEEE
Q 042434          212 TETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDS--KLTLKHTLRSHQNPVSFVAWSPD----DTKLLTC  285 (517)
Q Consensus       212 ~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~--~~~~~~~~~~h~~~v~~l~~s~~----~~~l~s~  285 (517)
                      .-..+.-+.|++.|+|.+|||+|.++|+|+.|.+|++..++...  .......+..|.+.|..++|..+    +..|+++
T Consensus        79 ~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~  158 (350)
T KOG0641|consen   79 SVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASA  158 (350)
T ss_pred             eEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEec
Confidence            34455567899999999999999999999999999998765322  12233457789999999999643    4667776


Q ss_pred             eC-CCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCC-eeEeee------CcCCCceE
Q 042434          286 GN-AEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGN-EIKAWR------GTRIPKVL  357 (517)
Q Consensus       286 ~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~-~~~~~~------~~~~~~i~  357 (517)
                      +. |..|.+-|..+|+..+.+.+|.+.|.++- +-++-.+++|+.|.+  |..||++-+ .+....      +...+.|.
T Consensus       159 gagdc~iy~tdc~~g~~~~a~sghtghilaly-swn~~m~~sgsqdkt--irfwdlrv~~~v~~l~~~~~~~glessava  235 (350)
T KOG0641|consen  159 GAGDCKIYITDCGRGQGFHALSGHTGHILALY-SWNGAMFASGSQDKT--IRFWDLRVNSCVNTLDNDFHDGGLESSAVA  235 (350)
T ss_pred             CCCcceEEEeecCCCCcceeecCCcccEEEEE-EecCcEEEccCCCce--EEEEeeeccceeeeccCcccCCCcccceeE
Confidence            54 66888889999999999999999998862 335889999999999  677776632 222221      12235799


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC---ccceEE
Q 042434          358 DLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKW---EKPFKY  432 (517)
Q Consensus       358 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~---~~~~~~  432 (517)
                      +++..|.|+++++|-.|....+||++.+.  .....|...|.++.|+|...++++++.|..|++-|+.+..   ......
T Consensus       236 av~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv  315 (350)
T KOG0641|consen  236 AVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVV  315 (350)
T ss_pred             EEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEE
Confidence            99999999999999999999999999988  6667788899999999999999999999999999997641   223333


Q ss_pred             eCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecC
Q 042434          433 TGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRR  469 (517)
Q Consensus       433 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~  469 (517)
                      ..|...  .| .+.|+|..--+++.+.|.++.+|-+.
T Consensus       316 ~ehkdk--~i-~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  316 AEHKDK--AI-QCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             EeccCc--eE-EEEecCccceeeeccCcceEEEeccC
Confidence            444443  23 34458888888999999999999753

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=2.1e-25  Score=189.13  Aligned_cols=267  Identities=18%  Similarity=0.299  Sum_probs=215.2

Q ss_pred             CCCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEe------cCC--------------------
Q 042434          201 EDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKV------LED--------------------  254 (517)
Q Consensus       201 ~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~------~~~--------------------  254 (517)
                      +...+.|....+.|+..+.||.+.|+|+.|++.+.++++++.|++..||..      ...                    
T Consensus       169 DhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~  248 (481)
T KOG0300|consen  169 DHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNR  248 (481)
T ss_pred             ccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccccccc
Confidence            344566777788999999999999999999999999999999999999972      110                    


Q ss_pred             ----------Ce-eeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCe
Q 042434          255 ----------SK-LTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKR  323 (517)
Q Consensus       255 ----------~~-~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~  323 (517)
                                .. -.++..+.+|.+.|.+..|-..|+.+++++.|.+..+||+++|..+..+.+|....+.++-+|..++
T Consensus       249 d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrL  328 (481)
T KOG0300|consen  249 DTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRL  328 (481)
T ss_pred             ccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceE
Confidence                      00 2345678899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeCCCceeEEEEeCC--CCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEE
Q 042434          324 LVCGSSDTEKGIFMCDCD--GNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSL  399 (517)
Q Consensus       324 l~~~~~d~~v~i~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~  399 (517)
                      +++++.|.+  +.+||.+  -..+..+.++. ..|++..|..+. .+++|+.|.+|++||+++..  ...+....+++.+
T Consensus       329 VvTsSrDtT--FRLWDFReaI~sV~VFQGHt-dtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRv  404 (481)
T KOG0300|consen  329 VVTSSRDTT--FRLWDFREAIQSVAVFQGHT-DTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRV  404 (481)
T ss_pred             EEEeccCce--eEeccchhhcceeeeecccc-cceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeeecCCcccee
Confidence            999999999  5555554  34455555555 589999998764 67899999999999999877  5667778899999


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCC--cEEEEecCCCcEEEEecCCC
Q 042434          400 SVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDG--TFIASGSENSQIYIWNRRNS  471 (517)
Q Consensus       400 ~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~dg~i~iwd~~~~  471 (517)
                      +++..+..++.-..+..|++||+.+.......-.........+.|++|..+.  .-|++++.|..+.-|.+...
T Consensus       405 avs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  405 AVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             EeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence            9999988999999999999999977522111111222233446666665432  34788899999999998754

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.94  E-value=7e-25  Score=194.86  Aligned_cols=300  Identities=16%  Similarity=0.248  Sum_probs=226.1

Q ss_pred             cccEEEeccccCcEEEEEECCCC--CEEEEeeCCCcEEEEEecC-CCeeeEEEEeccCCCCEEEEEECCCC-CeEEEEeC
Q 042434          212 TETVQILTEHKNEVWFVQFSNNG--EYLASSSSDCSAIIWKVLE-DSKLTLKHTLRSHQNPVSFVAWSPDD-TKLLTCGN  287 (517)
Q Consensus       212 ~~~~~~l~~h~~~v~~~~~s~~~--~~l~t~~~dg~i~iw~~~~-~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~  287 (517)
                      .....+.+-|.++|++++|+|..  +.+|+|..-|.|-+||+.+ .....-+..+..|..+|.++.|+|.+ ..+++.|+
T Consensus       176 ~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSy  255 (498)
T KOG4328|consen  176 YRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSY  255 (498)
T ss_pred             ceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeecc
Confidence            44556777899999999999944  6899999999999999942 22334556788899999999999954 78999999


Q ss_pred             CCeEEEEECCCCcEEE--EeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCC
Q 042434          288 AEVLKLWDVETGICKH--TFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDG  365 (517)
Q Consensus       288 dg~i~iwd~~~~~~~~--~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  365 (517)
                      ||+|+.-|++++....  ........+.++.|+.+...++++..=|...++.....+.....+..+.. .|.+++++|-.
T Consensus       256 DGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k-KI~sv~~NP~~  334 (498)
T KOG4328|consen  256 DGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKK-KITSVALNPVC  334 (498)
T ss_pred             CceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhc-ccceeecCCCC
Confidence            9999999998764333  33335567788889988888888888886334444444555555555554 89999999976


Q ss_pred             C-EEEEEeCCCcEEEEECCCce------EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcC---CCCccceEEeCc
Q 042434          366 E-NLISVLSDKDIRILNLGTYA------ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVA---GKWEKPFKYTGH  435 (517)
Q Consensus       366 ~-~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~---~~~~~~~~~~~~  435 (517)
                      . ++++++.|++.+|||++...      .....|...|.+..|||.+..+++.+.|..|++||..   .. ........|
T Consensus       335 p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~-~~p~~~I~H  413 (498)
T KOG4328|consen  335 PWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAK-DEPLGTIPH  413 (498)
T ss_pred             chheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeeccccccc-CCccceeec
Confidence            5 78899999999999998754      3455788899999999999889999999999999984   22 222222223


Q ss_pred             ccC----ceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCC-CeeEE-EecCCCCcEEEEeeCCCcEEEe
Q 042434          436 SQN----KYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSM-TVNCV-SWNPKRPKMLASASDDHTIRIW  509 (517)
Q Consensus       436 ~~~----~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~-~v~~v-~~~~~~~~~l~s~~~dg~v~iw  509 (517)
                      ...    ...+. ..|.|+..++++|-.-..|-|+|-..++.+..+..... .|.++ .|+|-+..+++-++..|.|+||
T Consensus       414 n~~t~RwlT~fK-A~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vf  492 (498)
T KOG4328|consen  414 NNRTGRWLTPFK-AAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVF  492 (498)
T ss_pred             cCcccccccchh-heeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEE
Confidence            221    12233 34589999999999999999999999988888755433 55554 8999883355555678899999


Q ss_pred             CCCCC
Q 042434          510 GPCQS  514 (517)
Q Consensus       510 ~~~~~  514 (517)
                      .-+.+
T Consensus       493 t~k~~  497 (498)
T KOG4328|consen  493 TNKKS  497 (498)
T ss_pred             ecCCC
Confidence            76543

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=3.4e-25  Score=186.74  Aligned_cols=243  Identities=17%  Similarity=0.225  Sum_probs=191.3

Q ss_pred             cCCCCEEEEEECC-CCCeEEEEeCCCeEEEEECCC-CcEE-EEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCC
Q 042434          265 SHQNPVSFVAWSP-DDTKLLTCGNAEVLKLWDVET-GICK-HTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD  341 (517)
Q Consensus       265 ~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~~-~~~~-~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~  341 (517)
                      ...+.|.+++||| ...+++++|.||+|++|+++. |..+ +....|.++|.+++|+.||..+++|+.|+.  +.+||+.
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~--~k~wDL~  102 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQ--AKLWDLA  102 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCc--eEEEEcc
Confidence            4568899999999 556677899999999999977 3433 334578999999999999999999999999  8899999


Q ss_pred             CCeeEeeeCcCCCceEEEEEccCCC--EEEEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEE
Q 042434          342 GNEIKAWRGTRIPKVLDLAVTPDGE--NLISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIH  418 (517)
Q Consensus       342 ~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~  418 (517)
                      ..+......|. ++|.++.|-+...  .|++|+.|++|+.||++... .........+.++..-  ...++++..+..|.
T Consensus       103 S~Q~~~v~~Hd-~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~--~pm~vVata~r~i~  179 (347)
T KOG0647|consen  103 SGQVSQVAAHD-APVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVL--YPMAVVATAERHIA  179 (347)
T ss_pred             CCCeeeeeecc-cceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhcc--CceeEEEecCCcEE
Confidence            88777766655 5899999987766  89999999999999999876 4455555666665543  45788999999999


Q ss_pred             EEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCC--ceeEEecCCCC---------CeeEE
Q 042434          419 MWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS--KPIEILSGHSM---------TVNCV  487 (517)
Q Consensus       419 ~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~h~~---------~v~~v  487 (517)
                      +|++++..........  .-.+.+++++.-.|....+.|+-+|.+.|..+..+  +.-.+++.|..         .|++|
T Consensus       180 vynL~n~~te~k~~~S--pLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi  257 (347)
T KOG0647|consen  180 VYNLENPPTEFKRIES--PLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSI  257 (347)
T ss_pred             EEEcCCCcchhhhhcC--cccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecce
Confidence            9999876333333222  23455666665677777799999999999988876  44456666652         58899


Q ss_pred             EecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434          488 SWNPKRPKMLASASDDHTIRIWGPCQSS  515 (517)
Q Consensus       488 ~~~~~~~~~l~s~~~dg~v~iw~~~~~~  515 (517)
                      +|+|.. ..|+|+|.||++.+||-....
T Consensus       258 ~FhP~h-gtlvTaGsDGtf~FWDkdar~  284 (347)
T KOG0647|consen  258 AFHPVH-GTLVTAGSDGTFSFWDKDART  284 (347)
T ss_pred             Eeeccc-ceEEEecCCceEEEecchhhh
Confidence            999988 689999999999999976544

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.94  E-value=2.5e-25  Score=200.39  Aligned_cols=251  Identities=19%  Similarity=0.292  Sum_probs=193.9

Q ss_pred             EEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc----EEEEeC-CCCCceEEEEEeCCCCeEEEeeCCCcee
Q 042434          260 KHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI----CKHTFG-DHGFIVSSCAWFPDSKRLVCGSSDTEKG  334 (517)
Q Consensus       260 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~-~~~~~v~~i~~~~~~~~l~~~~~d~~v~  334 (517)
                      ...+.+|+..|.++++.|.|..+++|+.|-+|++||+....    ..+.+. .....|.++.|++.|..|++.+....  
T Consensus       160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq--  237 (641)
T KOG0772|consen  160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ--  237 (641)
T ss_pred             eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcc--
Confidence            34678899999999999999999999999999999996542    122222 34678999999999999998888777  


Q ss_pred             EEEEeCCCCeeEeee------------CcCCCceEEEEEccCCC-EEEEEeCCCcEEEEECCCce--EEee------ccC
Q 042434          335 IFMCDCDGNEIKAWR------------GTRIPKVLDLAVTPDGE-NLISVLSDKDIRILNLGTYA--ERVI------SEE  393 (517)
Q Consensus       335 i~~~~~~~~~~~~~~------------~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~--~~~~------~~~  393 (517)
                      ..++|-.|..+..+.            .+|...++|.+|+|+.+ .+++++.||++++||+...+  ..++      ...
T Consensus       238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~R  317 (641)
T KOG0772|consen  238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKR  317 (641)
T ss_pred             eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcc
Confidence            777787776655442            24556789999999765 78999999999999998765  2222      223


Q ss_pred             CCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccc-eEE-eCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCC
Q 042434          394 HPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKP-FKY-TGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS  471 (517)
Q Consensus       394 ~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~-~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  471 (517)
                      -++++++|+++|+.+++|+.||.|.+|+..+....+ ..+ ..|.. ...|+++.||+||++|++-+.|+++++||++..
T Consensus       318 v~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~-g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~  396 (641)
T KOG0772|consen  318 VPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLP-GQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF  396 (641)
T ss_pred             cCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCC-CCceeEEEeccccchhhhccCCCceeeeecccc
Confidence            478999999999999999999999999985542222 222 23433 345888888999999999999999999999875


Q ss_pred             -ceeEEecCC--CCCeeEEEecCCCCcEEEEeeC------CCcEEEeCCCCC
Q 042434          472 -KPIEILSGH--SMTVNCVSWNPKRPKMLASASD------DHTIRIWGPCQS  514 (517)
Q Consensus       472 -~~~~~~~~h--~~~v~~v~~~~~~~~~l~s~~~------dg~v~iw~~~~~  514 (517)
                       +++.+..+-  .-+-+.++|+|+. .+++||+.      .|++.+||..+-
T Consensus       397 kkpL~~~tgL~t~~~~tdc~FSPd~-kli~TGtS~~~~~~~g~L~f~d~~t~  447 (641)
T KOG0772|consen  397 KKPLNVRTGLPTPFPGTDCCFSPDD-KLILTGTSAPNGMTAGTLFFFDRMTL  447 (641)
T ss_pred             ccchhhhcCCCccCCCCccccCCCc-eEEEecccccCCCCCceEEEEeccce
Confidence             456555442  3456789999999 78988874      467888886553

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=4e-26  Score=196.87  Aligned_cols=243  Identities=16%  Similarity=0.233  Sum_probs=198.2

Q ss_pred             EEEEeccCCCCEEEEEECCCC-CeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEE
Q 042434          259 LKHTLRSHQNPVSFVAWSPDD-TKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM  337 (517)
Q Consensus       259 ~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~  337 (517)
                      .+..+.+|.+.|.|++=+|.. ..+++|+.||.|++||+.+..+..++..|.+.|..+++..  ..+++++.|.+  |..
T Consensus        58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKt--vK~  133 (433)
T KOG0268|consen   58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKT--VKQ  133 (433)
T ss_pred             chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcc--eee
Confidence            445678999999999999987 7899999999999999999999999999999999999986  78999999999  666


Q ss_pred             EeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCE-EEEEeCC
Q 042434          338 CDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKN-FIVNLNS  414 (517)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~-l~~~~~d  414 (517)
                      |...+.....+.+..  .+..+.-+..+..+++++.  .|.|||.....  .........+.++.|+|.... |+++..|
T Consensus       134 wk~~~~p~~tilg~s--~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sD  209 (433)
T KOG0268|consen  134 WKIDGPPLHTILGKS--VYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASD  209 (433)
T ss_pred             eeccCCcceeeeccc--cccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccC
Confidence            666666666665544  5777777777778887765  48999986544  444555667999999997655 5556689


Q ss_pred             CeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCC-ceeEEecCCCCCeeEEEecCCC
Q 042434          415 QEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS-KPIEILSGHSMTVNCVSWNPKR  493 (517)
Q Consensus       415 ~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~v~~~~~~  493 (517)
                      +.|.+||++.. .+..+..-...    ...++|+|.+--+++|++|..++.||++.. +++....+|.+.|.+|+|+|.|
T Consensus       210 rsIvLyD~R~~-~Pl~KVi~~mR----TN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG  284 (433)
T KOG0268|consen  210 RSIVLYDLRQA-SPLKKVILTMR----TNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTG  284 (433)
T ss_pred             CceEEEecccC-Cccceeeeecc----ccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCc
Confidence            99999999887 44444332222    335566898888999999999999999875 5888889999999999999999


Q ss_pred             CcEEEEeeCCCcEEEeCCCCCC
Q 042434          494 PKMLASASDDHTIRIWGPCQSS  515 (517)
Q Consensus       494 ~~~l~s~~~dg~v~iw~~~~~~  515 (517)
                       .-++|||.|.+|+||.++.+.
T Consensus       285 -~EfvsgsyDksIRIf~~~~~~  305 (433)
T KOG0268|consen  285 -QEFVSGSYDKSIRIFPVNHGH  305 (433)
T ss_pred             -chhccccccceEEEeecCCCc
Confidence             789999999999999998764

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=1.1e-24  Score=193.79  Aligned_cols=245  Identities=22%  Similarity=0.345  Sum_probs=202.4

Q ss_pred             EEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEE----E---e-----------CCCCCceEEEEEeCCCC
Q 042434          261 HTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKH----T---F-----------GDHGFIVSSCAWFPDSK  322 (517)
Q Consensus       261 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~----~---~-----------~~~~~~v~~i~~~~~~~  322 (517)
                      ..+..|.-+|.+++++|++++.++++.+|+|.-|++.+|+...    +   .           +.|...+.+++.++||+
T Consensus       136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk  215 (479)
T KOG0299|consen  136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK  215 (479)
T ss_pred             eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence            3455689999999999999999999999999999998886431    1   0           25777899999999999


Q ss_pred             eEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEE
Q 042434          323 RLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLS  400 (517)
Q Consensus       323 ~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~  400 (517)
                      +|++|+.|..  |.+|+.++........+|.+.|.+++|-.....+++++.|..+++|++....  ...++|...|..+.
T Consensus       216 ylatgg~d~~--v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id  293 (479)
T KOG0299|consen  216 YLATGGRDRH--VQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID  293 (479)
T ss_pred             EEEecCCCce--EEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence            9999999998  7788887644444444555799999999988999999999999999998877  77888999999999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEec-C
Q 042434          401 VSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILS-G  479 (517)
Q Consensus       401 ~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~  479 (517)
                      ...-++.+-+|+.|.++++|++..  .....+.++...   +.|+++ -+...+++|+.||.|.+|++.+.+++.+.. +
T Consensus       294 aL~reR~vtVGgrDrT~rlwKi~e--esqlifrg~~~s---idcv~~-In~~HfvsGSdnG~IaLWs~~KKkplf~~~~A  367 (479)
T KOG0299|consen  294 ALSRERCVTVGGRDRTVRLWKIPE--ESQLIFRGGEGS---IDCVAF-INDEHFVSGSDNGSIALWSLLKKKPLFTSRLA  367 (479)
T ss_pred             hhcccceEEeccccceeEEEeccc--cceeeeeCCCCC---eeeEEE-ecccceeeccCCceEEEeeecccCceeEeecc
Confidence            999999999999999999999955  344455566544   333332 356689999999999999999999888764 1


Q ss_pred             C-----------CCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCC
Q 042434          480 H-----------SMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQS  514 (517)
Q Consensus       480 h-----------~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~  514 (517)
                      |           ...|++++..|.. .++++|+.+|.|++|.+..+
T Consensus       368 Hgv~~~~~~~~~~~Witsla~i~~s-dL~asGS~~G~vrLW~i~~g  412 (479)
T KOG0299|consen  368 HGVIPELDPVNGNFWITSLAVIPGS-DLLASGSWSGCVRLWKIEDG  412 (479)
T ss_pred             ccccCCccccccccceeeeEecccC-ceEEecCCCCceEEEEecCC
Confidence            2           2279999999988 79999999999999999876

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=6.4e-24  Score=179.55  Aligned_cols=265  Identities=18%  Similarity=0.307  Sum_probs=194.4

Q ss_pred             eccccCcEEEEEECCCCCEEEEeeCCCcEEEEEe-cCCCeeeEEEEeccCCCCEEEEEECC--CCCeEEEEeCCCeEEEE
Q 042434          218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKV-LEDSKLTLKHTLRSHQNPVSFVAWSP--DDTKLLTCGNAEVLKLW  294 (517)
Q Consensus       218 l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~-~~~~~~~~~~~~~~h~~~v~~l~~s~--~~~~l~s~~~dg~i~iw  294 (517)
                      -.+|.+-|.|+.|.+.|+.+|||+.|++|+|||. ...+++......+.|.+.|..+.|.+  -|+.+|+++.|+++.||
T Consensus         9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW   88 (361)
T KOG2445|consen    9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW   88 (361)
T ss_pred             ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence            3579999999999999999999999999999995 44466778888999999999999975  48999999999999999


Q ss_pred             ECCC------C---cEEEEeCCCCCceEEEEEeCC--CCeEEEeeCCCceeEEEEeCCC-CeeEe------------eeC
Q 042434          295 DVET------G---ICKHTFGDHGFIVSSCAWFPD--SKRLVCGSSDTEKGIFMCDCDG-NEIKA------------WRG  350 (517)
Q Consensus       295 d~~~------~---~~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~d~~v~i~~~~~~~-~~~~~------------~~~  350 (517)
                      .-..      +   ....++......|+.+.|.|.  |-.+++++.||.++||  +... ..+..            ..+
T Consensus        89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIY--EA~dp~nLs~W~Lq~Ei~~~~~pp~  166 (361)
T KOG2445|consen   89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIY--EAPDPMNLSQWTLQHEIQNVIDPPG  166 (361)
T ss_pred             eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEE--ecCCccccccchhhhhhhhccCCcc
Confidence            7521      1   223455677889999999995  7789999999996555  3221 11111            112


Q ss_pred             cCCCceEEEEEccC---CCEEEEEeCC-----CcEEEEECCCce------EEeeccCCCeeEEEEcCCC----CEEEEEe
Q 042434          351 TRIPKVLDLAVTPD---GENLISVLSD-----KDIRILNLGTYA------ERVISEEHPITSLSVSVDC----KNFIVNL  412 (517)
Q Consensus       351 ~~~~~i~~~~~~~~---~~~l~~~~~d-----g~i~i~d~~~~~------~~~~~~~~~i~~~~~s~~~----~~l~~~~  412 (517)
                      .......|+.|+|.   ..+|++|+.+     +.+.||......      .....+..+|+.++|.|+-    ..+++++
T Consensus       167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~  246 (361)
T KOG2445|consen  167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVAT  246 (361)
T ss_pred             cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEee
Confidence            23346778888874   3477777766     478888765433      3344788899999999962    4588999


Q ss_pred             CCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCC
Q 042434          413 NSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPK  492 (517)
Q Consensus       413 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~  492 (517)
                      .|| |+||.+......+..    ..                +.+++.-+     ++ .-+.+..+.+|.+.|..+.|+-.
T Consensus       247 kDg-v~I~~v~~~~s~i~~----ee----------------~~~~~~~~-----~l-~v~~vs~~~~H~~~VWrv~wNmt  299 (361)
T KOG2445|consen  247 KDG-VRIFKVKVARSAIEE----EE----------------VLAPDLMT-----DL-PVEKVSELDDHNGEVWRVRWNMT  299 (361)
T ss_pred             cCc-EEEEEEeeccchhhh----hc----------------ccCCCCcc-----cc-ceEEeeeccCCCCceEEEEEeee
Confidence            999 999998653221100    00                00111111     11 12456778899999999999999


Q ss_pred             CCcEEEEeeCCCcEEEeCCC
Q 042434          493 RPKMLASASDDHTIRIWGPC  512 (517)
Q Consensus       493 ~~~~l~s~~~dg~v~iw~~~  512 (517)
                      | .+|++.|+||.||+|...
T Consensus       300 G-tiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  300 G-TILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             e-eEEeecCCCceeeehhhh
Confidence            9 799999999999999754

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=4.1e-24  Score=181.01  Aligned_cols=241  Identities=18%  Similarity=0.237  Sum_probs=191.5

Q ss_pred             CCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCee
Q 042434          266 HQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEI  345 (517)
Q Consensus       266 h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~  345 (517)
                      ....|+++.|+|.++.|++++.||++++||+........+ .|..++.+++|.+ ...+++|+.||.  |..+|..+...
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~--vr~~Dln~~~~   87 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQ--VRRYDLNTGNE   87 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccC-CceEEEeccCce--EEEEEecCCcc
Confidence            3678999999999999999999999999999888666566 7899999999986 668999999999  77777776555


Q ss_pred             EeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 042434          346 KAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAG  424 (517)
Q Consensus       346 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~  424 (517)
                      ..+..+ ...+.++..++....+++|+.|++|++||.+... .........|.++..  .+..|++|+.+..+.+||+++
T Consensus        88 ~~igth-~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn  164 (323)
T KOG1036|consen   88 DQIGTH-DEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRN  164 (323)
T ss_pred             eeeccC-CCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEec--cCCEEEEeecCceEEEEEccc
Confidence            544444 4589999999999999999999999999999744 334444556666655  567899999999999999987


Q ss_pred             CCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCC----ceeEEecCCC---------CCeeEEEecC
Q 042434          425 KWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS----KPIEILSGHS---------MTVNCVSWNP  491 (517)
Q Consensus       425 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~h~---------~~v~~v~~~~  491 (517)
                      .....+.  ....-.+.++++..-|++.-.++++-||.|.+=.+...    +.-..++.|.         -+|++++|+|
T Consensus       165 ~~~~~q~--reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp  242 (323)
T KOG1036|consen  165 LDEPFQR--RESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP  242 (323)
T ss_pred             ccchhhh--ccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc
Confidence            6333321  12333456777777788888999999999988666554    3445566664         3799999999


Q ss_pred             CCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434          492 KRPKMLASASDDHTIRIWGPCQSSE  516 (517)
Q Consensus       492 ~~~~~l~s~~~dg~v~iw~~~~~~~  516 (517)
                      -. ..|||||.||.|.+||+.+.+.
T Consensus       243 ~~-~tfaTgGsDG~V~~Wd~~~rKr  266 (323)
T KOG1036|consen  243 IH-GTFATGGSDGIVNIWDLFNRKR  266 (323)
T ss_pred             cc-ceEEecCCCceEEEccCcchhh
Confidence            97 6899999999999999988765

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1.9e-25  Score=206.69  Aligned_cols=231  Identities=21%  Similarity=0.245  Sum_probs=197.1

Q ss_pred             CCCCeEEEEeCCCeEEEEECCCCc------EEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCC--eeEee
Q 042434          277 PDDTKLLTCGNAEVLKLWDVETGI------CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGN--EIKAW  348 (517)
Q Consensus       277 ~~~~~l~s~~~dg~i~iwd~~~~~------~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~--~~~~~  348 (517)
                      |.+++|++||.||.|++|++....      .+.+++.|...|..++...+++.|+++|.|-+  |.+|+....  -....
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtT--VK~W~~~~~~~~c~st  112 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTT--VKVWNAHKDNTFCMST  112 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCce--EEEeecccCcchhHhh
Confidence            467789999999999999985432      46678899999999999999999999999999  666665532  22333


Q ss_pred             eCcCCCceEEEEE-ccCCCEEEEEeCCCcEEEEECCCceE-------------EeeccCCCeeEEEEcCCCCEEEEEeCC
Q 042434          349 RGTRIPKVLDLAV-TPDGENLISVLSDKDIRILNLGTYAE-------------RVISEEHPITSLSVSVDCKNFIVNLNS  414 (517)
Q Consensus       349 ~~~~~~~i~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~~-------------~~~~~~~~i~~~~~s~~~~~l~~~~~d  414 (517)
                      ...|...|.|+++ .++...+++|+-|+.|.+||+.++..             ...++..++.+++..+.|..++.|+..
T Consensus       113 ir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgte  192 (735)
T KOG0308|consen  113 IRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTE  192 (735)
T ss_pred             hhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcc
Confidence            4445579999999 78888999999999999999986621             112566789999999999999999999


Q ss_pred             CeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCC
Q 042434          415 QEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRP  494 (517)
Q Consensus       415 ~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~  494 (517)
                      +.+++||.++. ..+.++.||...   ++++..++||..++++|.||+|++||+...+++.++..|...|+++..+|+- 
T Consensus       193 k~lr~wDprt~-~kimkLrGHTdN---Vr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf-  267 (735)
T KOG0308|consen  193 KDLRLWDPRTC-KKIMKLRGHTDN---VRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSF-  267 (735)
T ss_pred             cceEEeccccc-cceeeeeccccc---eEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCc-
Confidence            99999999998 788888899988   5555558999999999999999999999999999999999999999999998 


Q ss_pred             cEEEEeeCCCcEEEeCCCCC
Q 042434          495 KMLASASDDHTIRIWGPCQS  514 (517)
Q Consensus       495 ~~l~s~~~dg~v~iw~~~~~  514 (517)
                      ..+.+|+.||.|..=|+.+.
T Consensus       268 ~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  268 THVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             ceEEecCCCCcEEecccCCc
Confidence            79999999999998888763

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1e-24  Score=194.48  Aligned_cols=271  Identities=17%  Similarity=0.237  Sum_probs=210.6

Q ss_pred             CEEEEeeC-CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceE
Q 042434          235 EYLASSSS-DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVS  313 (517)
Q Consensus       235 ~~l~t~~~-dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  313 (517)
                      .|++++.. -..+.+|.+.......   ...--.++|.+++-+|+|.+|+.|+..|.+++|.+.+|..+..+..|-..|+
T Consensus        51 ~yllsaq~~rp~l~vw~i~k~~~~~---q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~IT  127 (476)
T KOG0646|consen   51 EYLLSAQLKRPLLHVWEILKKDQVV---QYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSIT  127 (476)
T ss_pred             hheeeecccCccccccccCchhhhh---hhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhcccee
Confidence            56666643 4578899986433222   2223468899999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCeEEEeeCCCceeEEEEeC--------CCCeeEeeeCcCCCceEEEEEccCC--CEEEEEeCCCcEEEEECC
Q 042434          314 SCAWFPDSKRLVCGSSDTEKGIFMCDC--------DGNEIKAWRGTRIPKVLDLAVTPDG--ENLISVLSDKDIRILNLG  383 (517)
Q Consensus       314 ~i~~~~~~~~l~~~~~d~~v~i~~~~~--------~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~i~d~~  383 (517)
                      |+.|+.||.+|++|+.||.|.+|....        ...++..|..|. -+|+++...+.|  .++++++.|.++++||+.
T Consensus       128 cL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Ht-lsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS  206 (476)
T KOG0646|consen  128 CLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHT-LSITDLQIGSGGTNARLYTASEDRTIKLWDLS  206 (476)
T ss_pred             EEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCc-ceeEEEEecCCCccceEEEecCCceEEEEEec
Confidence            999999999999999999955543321        123344454444 489999887764  589999999999999999


Q ss_pred             Cce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC---------------ccceEEeCcccCceEEEeecC
Q 042434          384 TYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKW---------------EKPFKYTGHSQNKYVIRSCFG  447 (517)
Q Consensus       384 ~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~---------------~~~~~~~~~~~~~~~i~~~~~  447 (517)
                      .+. ......+..+.+++++|-++.+++|+.+|.|.+.++....               .....+.||... ..|+|+..
T Consensus       207 ~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~-~~ITcLai  285 (476)
T KOG0646|consen  207 LGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENE-SAITCLAI  285 (476)
T ss_pred             cceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCC-cceeEEEE
Confidence            988 6667778899999999999999999999999998874321               122334555552 35788888


Q ss_pred             CCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeC
Q 042434          448 GLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWG  510 (517)
Q Consensus       448 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~  510 (517)
                      +.||..|++|+.||.++|||+.+.++++++....++|+.+.+.|-.+..+..-+....+-.|+
T Consensus       286 s~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~  348 (476)
T KOG0646|consen  286 STDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGIILFEHKQPSLPNPH  348 (476)
T ss_pred             ecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccccceecccccCccCCchH
Confidence            999999999999999999999999999999877899999999765433333333333333343

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.93  E-value=1.1e-23  Score=189.41  Aligned_cols=327  Identities=18%  Similarity=0.231  Sum_probs=243.0

Q ss_pred             HHHHHHHHhccccccCCCCCcccccc-CCCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecC
Q 042434          175 HLVETAVTSQIDSCQYHNSSVAISLY-EDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLE  253 (517)
Q Consensus       175 ~l~~~~~~~q~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~  253 (517)
                      .++++..+.-..+..|.++...+..- .+.+.+|..-..+..+....|.+.|.+++.-.+|.+|- |+.|+.|..||-.-
T Consensus       239 ~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y  317 (626)
T KOG2106|consen  239 GIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNY  317 (626)
T ss_pred             eccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccc
Confidence            34455445445555666666644443 44455666655566666669999999999999998555 99999999998321


Q ss_pred             CCe-------------------------------------eeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEEC
Q 042434          254 DSK-------------------------------------LTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDV  296 (517)
Q Consensus       254 ~~~-------------------------------------~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~  296 (517)
                      ...                                     .....+..+|......++.+|+.+.+++++.|+.+++|+ 
T Consensus       318 ~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-  396 (626)
T KOG2106|consen  318 RKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-  396 (626)
T ss_pred             cccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-
Confidence            100                                     001123457888999999999999999999999999999 


Q ss_pred             CCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCc
Q 042434          297 ETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKD  376 (517)
Q Consensus       297 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  376 (517)
                       ..+...+. ....++.|+.|+|.| .++.|+..|.  .++.|..+..+...... ..++.++.|+|+|.++++|+.|+.
T Consensus       397 -~~k~~wt~-~~~d~~~~~~fhpsg-~va~Gt~~G~--w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~  470 (626)
T KOG2106|consen  397 -DHKLEWTK-IIEDPAECADFHPSG-VVAVGTATGR--WFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNH  470 (626)
T ss_pred             -CCceeEEE-EecCceeEeeccCcc-eEEEeeccce--EEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCe
Confidence             44444433 346778999999999 9999999998  88889888777766666 568999999999999999999999


Q ss_pred             EEEEECCCce----EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCc---------------cc
Q 042434          377 IRILNLGTYA----ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGH---------------SQ  437 (517)
Q Consensus       377 i~i~d~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~---------------~~  437 (517)
                      |++|.+....    .....+..+|+.+.|++|++++.+.+.|-.|..|..... ........-               ..
T Consensus       471 iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~-~~~ts~kDvkW~t~~c~lGF~v~g~s  549 (626)
T KOG2106|consen  471 IYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSEC-KQITSVKDVKWATYTCTLGFEVFGGS  549 (626)
T ss_pred             EEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccC-cccceecceeeeeeEEEEEEEEeccc
Confidence            9999886644    222334489999999999999999999999999954321 111111100               11


Q ss_pred             CceEEEeecCCCCCcEEEEecCCCcEEEEecCCC---ceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCC
Q 042434          438 NKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS---KPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGP  511 (517)
Q Consensus       438 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~  511 (517)
                      ....+..++-+.+.+.+++|.+.|+|++|...-.   .+...+.+|++.|++++|.-+. ..+++.+.|..|..|++
T Consensus       550 ~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d-~~li~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  550 DGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKD-SHLISTGKDTSIMQWRL  625 (626)
T ss_pred             CCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCC-ceEEecCCCceEEEEEe
Confidence            1223444444667889999999999999985432   3556778999999999999887 56777779999999986

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=3.7e-23  Score=192.65  Aligned_cols=282  Identities=17%  Similarity=0.205  Sum_probs=225.7

Q ss_pred             eccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCC-CCEEEEEECCCCCeEEEEeCCCeEEEEEC
Q 042434          218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQ-NPVSFVAWSPDDTKLLTCGNAEVLKLWDV  296 (517)
Q Consensus       218 l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~-~~v~~l~~s~~~~~l~s~~~dg~i~iwd~  296 (517)
                      +.--..+|.+++||.+.+.||.+-.||.|.||++..+  +-....+.++. ..|.+++|+ ++..|++.+.+|.|.-||+
T Consensus        21 ~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~--w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl   97 (691)
T KOG2048|consen   21 VDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN--WFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDL   97 (691)
T ss_pred             EeeeccceEEEEEeccCCceeeeccCCcEEEEccCCC--ceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEec
Confidence            4445689999999999999999999999999999743  44445555554 679999999 5667889999999999999


Q ss_pred             CCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeE--eeeCcCCCceEEEEEccCCCEEEEEeCC
Q 042434          297 ETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIK--AWRGTRIPKVLDLAVTPDGENLISVLSD  374 (517)
Q Consensus       297 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~d  374 (517)
                      .+++....+....+.|++++.+|.+..++.|+.||.  ++.++.....+.  .......+.+.++.|+|++..+++|+.|
T Consensus        98 ~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGv--l~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~D  175 (691)
T KOG2048|consen   98 HTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGV--LYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSID  175 (691)
T ss_pred             ccCceeEEecCCCcceeEEEeCCccceEEeecCCce--EEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccC
Confidence            999999999999999999999999999999999995  777777655543  3333445789999999999999999999


Q ss_pred             CcEEEEECCCceEEe------ec----cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEe
Q 042434          375 KDIRILNLGTYAERV------IS----EEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRS  444 (517)
Q Consensus       375 g~i~i~d~~~~~~~~------~~----~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~  444 (517)
                      |.|++||..++....      ..    ...-|.++.+- ....+++|...|.|.+||...+ .....+..|...+.   +
T Consensus       176 g~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L-rd~tI~sgDS~G~V~FWd~~~g-TLiqS~~~h~adVl---~  250 (691)
T KOG2048|consen  176 GVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL-RDSTIASGDSAGTVTFWDSIFG-TLIQSHSCHDADVL---A  250 (691)
T ss_pred             ceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe-ecCcEEEecCCceEEEEcccCc-chhhhhhhhhccee---E
Confidence            999999999887322      11    11224555555 4467999999999999999877 67777777777644   4


Q ss_pred             ecCCCCCcEEEEecCCCcEEEEecCCCce----eEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCC
Q 042434          445 CFGGLDGTFIASGSENSQIYIWNRRNSKP----IEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPC  512 (517)
Q Consensus       445 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~  512 (517)
                      +...+++.++++++.|+.|.-|...+++.    ......|...|.+++..++   .+++||.|.++.+=...
T Consensus       251 Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~---~l~sgG~d~~l~i~~s~  319 (691)
T KOG2048|consen  251 LAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN---ALISGGRDFTLAICSSR  319 (691)
T ss_pred             EEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc---eEEecceeeEEEEcccc
Confidence            44478889999999999999998776533    2233468889999999875   69999999988875443

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.93  E-value=6.1e-23  Score=184.67  Aligned_cols=303  Identities=16%  Similarity=0.231  Sum_probs=227.6

Q ss_pred             cccCCCcccccCC-CcccEEEeccccCcEEEEEECCCCC-EEEEeeCCCcEEEEEecCCCeeeEEEEeccCC-CCEEEEE
Q 042434          198 SLYEDHCCGRDQI-PTETVQILTEHKNEVWFVQFSNNGE-YLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQ-NPVSFVA  274 (517)
Q Consensus       198 ~~~~~~~~~~~~~-~~~~~~~l~~h~~~v~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~-~~v~~l~  274 (517)
                      ....++....|+. ........+.....|..+.|+|.+. +++++ ..|.+..|+...+.-.+....+..++ ..|.|++
T Consensus       175 D~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~-Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~  253 (626)
T KOG2106|consen  175 DDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITC-GKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVT  253 (626)
T ss_pred             cCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEe-CCceEEEEEccCCceEEEeeccccccceEEEEEE
Confidence            3334444433333 3344555566678889999999554 55555 45899999998776555555555443 5699999


Q ss_pred             ECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeE--------
Q 042434          275 WSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIK--------  346 (517)
Q Consensus       275 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~--------  346 (517)
                      |.++|. +++|..+|.|.||+..+.+..+....|.+.|.+++...+|.++- |+.|..  |..||..-+.++        
T Consensus       254 F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRk--i~~Wd~~y~k~r~~elPe~~  329 (626)
T KOG2106|consen  254 FLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRK--IILWDDNYRKLRETELPEQF  329 (626)
T ss_pred             EcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccce--EEeccccccccccccCchhc
Confidence            999885 78999999999999988887777779999999999999987655 999998  777764311111        


Q ss_pred             ----eeeC----------------------------cCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceEEeeccCC
Q 042434          347 ----AWRG----------------------------TRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEH  394 (517)
Q Consensus       347 ----~~~~----------------------------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  394 (517)
                          ....                            .+......++.+|+.+.+++++.|+.+++|+ ............
T Consensus       330 G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~~k~~wt~~~~d  408 (626)
T KOG2106|consen  330 GPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-DHKLEWTKIIED  408 (626)
T ss_pred             CCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-CCceeEEEEecC
Confidence                1100                            1223455688899999999999999999999 333366667788


Q ss_pred             CeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCC-ce
Q 042434          395 PITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS-KP  473 (517)
Q Consensus       395 ~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~  473 (517)
                      +..++.|+|.| .+++|+..|...+.|..+. ..+...   .. ...+.++.++|+|.++|.|+.|+.|++|.+... ..
T Consensus       409 ~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~-~lv~~~---~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~  482 (626)
T KOG2106|consen  409 PAECADFHPSG-VVAVGTATGRWFVLDTETQ-DLVTIH---TD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRK  482 (626)
T ss_pred             ceeEeeccCcc-eEEEeeccceEEEEecccc-eeEEEE---ec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcE
Confidence            99999999999 9999999999999999774 333222   22 334778888999999999999999999987654 33


Q ss_pred             eEEe-cCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434          474 IEIL-SGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ  513 (517)
Q Consensus       474 ~~~~-~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~  513 (517)
                      .... +.|.++|+.+.|++|+ +++.+-+.|-.|..|....
T Consensus       483 y~r~~k~~gs~ithLDwS~Ds-~~~~~~S~d~eiLyW~~~~  522 (626)
T KOG2106|consen  483 YSRVGKCSGSPITHLDWSSDS-QFLVSNSGDYEILYWKPSE  522 (626)
T ss_pred             EEEeeeecCceeEEeeecCCC-ceEEeccCceEEEEEcccc
Confidence            3322 2345899999999999 7999999999999995543

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.93  E-value=7.1e-24  Score=197.68  Aligned_cols=296  Identities=23%  Similarity=0.345  Sum_probs=230.8

Q ss_pred             cccEEEeccccCcEEEEEECCCCC---EEEEeeCCCcEEEEEecCCCe------------------eeEE----------
Q 042434          212 TETVQILTEHKNEVWFVQFSNNGE---YLASSSSDCSAIIWKVLEDSK------------------LTLK----------  260 (517)
Q Consensus       212 ~~~~~~l~~h~~~v~~~~~s~~~~---~l~t~~~dg~i~iw~~~~~~~------------------~~~~----------  260 (517)
                      ...+..+.||.+-|.+++|...+.   +||++|.|..|+||.+.-...                  ....          
T Consensus       181 f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~e  260 (764)
T KOG1063|consen  181 FARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFE  260 (764)
T ss_pred             eeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehh
Confidence            456788999999999999988544   899999999999998743320                  0111          


Q ss_pred             EEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc--EE-----EEeCCCCCceEEEEEeCCCCeEEEeeCCCce
Q 042434          261 HTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI--CK-----HTFGDHGFIVSSCAWFPDSKRLVCGSSDTEK  333 (517)
Q Consensus       261 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~-----~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v  333 (517)
                      ..+.||++.|.++.|+|.+..|++++.|.++.+|...+..  -+     ....+.........|+|+++.+++-+..|. 
T Consensus       261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg-  339 (764)
T KOG1063|consen  261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGG-  339 (764)
T ss_pred             hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCc-
Confidence            2235999999999999999999999999999999876542  11     222344566899999999999999999998 


Q ss_pred             eEEEEeCCC---CeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce------EEeeccCCCeeEEEEcCC
Q 042434          334 GIFMCDCDG---NEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA------ERVISEEHPITSLSVSVD  404 (517)
Q Consensus       334 ~i~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~i~~~~~s~~  404 (517)
                       .+.|....   -.......+|...|.+++|+|.|.++++.+.|.+-|+|-.-..+      .....|+..++|+++-+.
T Consensus       340 -~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~  418 (764)
T KOG1063|consen  340 -FHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE  418 (764)
T ss_pred             -EEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC
Confidence             77776332   12344456677799999999999999999999999998765332      233457788999999987


Q ss_pred             CCEEEEEeCCCeEEEEEcCC------------------------------------------------------------
Q 042434          405 CKNFIVNLNSQEIHMWDVAG------------------------------------------------------------  424 (517)
Q Consensus       405 ~~~l~~~~~d~~i~~~d~~~------------------------------------------------------------  424 (517)
                      .-.+++|.....+++|+...                                                            
T Consensus       419 ~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~  498 (764)
T KOG1063|consen  419 DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPC  498 (764)
T ss_pred             CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCch
Confidence            67788888888889987532                                                            


Q ss_pred             ---------------CCccceEEeCcccCceEEEeecCCCCCcEEEEecCCC-----cEEEEecCCCceeEEecCCCCCe
Q 042434          425 ---------------KWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENS-----QIYIWNRRNSKPIEILSGHSMTV  484 (517)
Q Consensus       425 ---------------~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~h~~~v  484 (517)
                                     .+..+.++.||   .+.+.++..+|+|+++|+++...     .|++|+..+...+..+.+|+-.|
T Consensus       499 ~L~ePP~EdqLq~~tLwPEv~KLYGH---GyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTV  575 (764)
T KOG1063|consen  499 ELTEPPTEDQLQQNTLWPEVHKLYGH---GYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTV  575 (764)
T ss_pred             hccCCChHHHHHHhccchhhHHhccC---ceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEE
Confidence                           00111122222   34466677799999999998653     69999999999999999999999


Q ss_pred             eEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434          485 NCVSWNPKRPKMLASASDDHTIRIWGPCQ  513 (517)
Q Consensus       485 ~~v~~~~~~~~~l~s~~~dg~v~iw~~~~  513 (517)
                      +.++|+||+ ++|++.|.|.++.+|....
T Consensus       576 T~l~FSpdg-~~LLsvsRDRt~sl~~~~~  603 (764)
T KOG1063|consen  576 TRLAFSPDG-RYLLSVSRDRTVSLYEVQE  603 (764)
T ss_pred             EEEEECCCC-cEEEEeecCceEEeeeeec
Confidence            999999999 7999999999999998754

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=3e-24  Score=202.62  Aligned_cols=283  Identities=14%  Similarity=0.248  Sum_probs=212.7

Q ss_pred             CcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeee-EEEEeccC---CCCEEEEEECC-CCCeEEEEeCCCeEEEEECC
Q 042434          223 NEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLT-LKHTLRSH---QNPVSFVAWSP-DDTKLLTCGNAEVLKLWDVE  297 (517)
Q Consensus       223 ~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~-~~~~~~~h---~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~  297 (517)
                      ....+|..+++-..++.++. ..+.||.+....... ....+...   .-.+..+.|+. +.++||+++..|.|.+||+.
T Consensus        40 ~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln  118 (839)
T KOG0269|consen   40 AKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN  118 (839)
T ss_pred             cccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence            34456677788888888776 478888875433211 11111111   12345677874 56899999999999999997


Q ss_pred             C---CcEEEEeCCCCCceEEEEEeCC-CCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEcc-CCCEEEEEe
Q 042434          298 T---GICKHTFGDHGFIVSSCAWFPD-SKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTP-DGENLISVL  372 (517)
Q Consensus       298 ~---~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~  372 (517)
                      .   .+.+..|..|...+.++.|++. ..+|++|+.||.  |..||.+.+.-..........|.++.|+| .+..++++.
T Consensus       119 k~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~--vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~  196 (839)
T KOG0269|consen  119 KSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGT--VKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIH  196 (839)
T ss_pred             ccccchhhhHhhhhccceeeeeeccCCccEEEecCCCce--EEEEeeecccccccccccchhhhceeeccCCCceEEEec
Confidence            7   5566688899999999999985 668999999999  77777775444333333556899999999 467899999


Q ss_pred             CCCcEEEEECCCce---EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCC
Q 042434          373 SDKDIRILNLGTYA---ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGL  449 (517)
Q Consensus       373 ~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~  449 (517)
                      ..|.+.+||++...   .....|.+++.++.|+|++.+|++|+.|+.|++||+.+...... ..-  .....+..+.|.|
T Consensus       197 dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~-~tI--nTiapv~rVkWRP  273 (839)
T KOG0269|consen  197 DSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPK-HTI--NTIAPVGRVKWRP  273 (839)
T ss_pred             CCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccce-eEE--eecceeeeeeecc
Confidence            99999999999877   66778999999999999999999999999999999975422221 111  2234466777788


Q ss_pred             CCcE-EEEec--CCCcEEEEecCCC-ceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCC
Q 042434          450 DGTF-IASGS--ENSQIYIWNRRNS-KPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGP  511 (517)
Q Consensus       450 ~~~~-l~~~~--~dg~i~iwd~~~~-~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~  511 (517)
                      +..+ |++++  .|-.|+|||++.. -+..++..|...++.++|....+..+.+++.||+|..-.+
T Consensus       274 ~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~  339 (839)
T KOG0269|consen  274 ARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLF  339 (839)
T ss_pred             CccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhh
Confidence            7654 55544  3678999998765 4778888999999999998755578999999998765443

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=9e-25  Score=206.10  Aligned_cols=244  Identities=15%  Similarity=0.186  Sum_probs=196.3

Q ss_pred             EEEEEECC-CCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCC-CCeEEEEeCCCeEEEEECCCCcEE
Q 042434          225 VWFVQFSN-NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPD-DTKLLTCGNAEVLKLWDVETGICK  302 (517)
Q Consensus       225 v~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~  302 (517)
                      +..+.|+. +.++|||++..|.|.+||+......+....+..|...++++.|++. ..+|++||.||+|++||++..+..
T Consensus        90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~  169 (839)
T KOG0269|consen   90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK  169 (839)
T ss_pred             hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc
Confidence            44567765 6789999999999999999753334555678899999999999985 478899999999999999999988


Q ss_pred             EEeCCCCCceEEEEEeC-CCCeEEEeeCCCceeEEEEeCCCCe-eEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEE
Q 042434          303 HTFGDHGFIVSSCAWFP-DSKRLVCGSSDTEKGIFMCDCDGNE-IKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRIL  380 (517)
Q Consensus       303 ~~~~~~~~~v~~i~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  380 (517)
                      .++.+....|..+.|+| .+..|+++...|.  +..||++... .......|.++|.++.|+|++.+|++|+.|+.|+||
T Consensus       170 ~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~--lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiW  247 (839)
T KOG0269|consen  170 STFRSNSESIRDVKFSPGYGNKFASIHDSGY--LQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIW  247 (839)
T ss_pred             ccccccchhhhceeeccCCCceEEEecCCce--EEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEE
Confidence            88989999999999999 4778888888898  8888887422 222334455799999999999999999999999999


Q ss_pred             ECCCce---EEeeccCCCeeEEEEcCCCCEE-EEEe--CCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEE
Q 042434          381 NLGTYA---ERVISEEHPITSLSVSVDCKNF-IVNL--NSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFI  454 (517)
Q Consensus       381 d~~~~~---~~~~~~~~~i~~~~~s~~~~~l-~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  454 (517)
                      |..+..   ...+....++.++.|-|...+. ++++  .|..|++||++....+...+..|......+.+-  +.|...+
T Consensus       248 d~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~--~~d~~~l  325 (839)
T KOG0269|consen  248 DMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWD--SGDRINL  325 (839)
T ss_pred             eccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceecc--CCCceee
Confidence            998655   5666778899999999987664 4443  377899999998877888888888764444332  3466788


Q ss_pred             EEecCCCcEEEEecCCCc
Q 042434          455 ASGSENSQIYIWNRRNSK  472 (517)
Q Consensus       455 ~~~~~dg~i~iwd~~~~~  472 (517)
                      .+++.||+|..-..+++.
T Consensus       326 ~s~sKD~tv~qh~~knat  343 (839)
T KOG0269|consen  326 WSCSKDGTVLQHLFKNAT  343 (839)
T ss_pred             EeecCccHHHHhhhhccc
Confidence            999999988766655543

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.92  E-value=4.9e-22  Score=185.73  Aligned_cols=271  Identities=16%  Similarity=0.119  Sum_probs=193.4

Q ss_pred             cccCCCcccEEEeccccCcEEEEEECCCCCEE-EEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEE
Q 042434          206 GRDQIPTETVQILTEHKNEVWFVQFSNNGEYL-ASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLT  284 (517)
Q Consensus       206 ~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s  284 (517)
                      .++....+.+..+.+|.. +.+++|+|+|+.+ ++++.++.|++||..++.   ....+..+.. +..++|+|+++.+++
T Consensus        15 ~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~---~~~~~~~~~~-~~~~~~~~~g~~l~~   89 (300)
T TIGR03866        15 VIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGE---VIGTLPSGPD-PELFALHPNGKILYI   89 (300)
T ss_pred             EEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCc---EEEeccCCCC-ccEEEECCCCCEEEE
Confidence            344445567777776544 6789999999876 566788999999997653   3344444433 567899999987765


Q ss_pred             E-eCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEe-eeCcCCCceEEEEEc
Q 042434          285 C-GNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKA-WRGTRIPKVLDLAVT  362 (517)
Q Consensus       285 ~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~-~~~~~~~~i~~~~~~  362 (517)
                      + +.++.+++||+.+++.+..+.. ...+.+++|+|++..+++++.++.. ++.|+..+..... ....  ..+..++|+
T Consensus        90 ~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~-~~~~d~~~~~~~~~~~~~--~~~~~~~~s  165 (300)
T TIGR03866        90 ANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNM-AHFIDTKTYEIVDNVLVD--QRPRFAEFT  165 (300)
T ss_pred             EcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCe-EEEEeCCCCeEEEEEEcC--CCccEEEEC
Confidence            5 5689999999999888777743 3446889999999999998887542 5557876544332 2222  245778999


Q ss_pred             cCCCEEEEE-eCCCcEEEEECCCceE-Eeec-c-------CCCeeEEEEcCCCCEEEEE-eCCCeEEEEEcCCCCccceE
Q 042434          363 PDGENLISV-LSDKDIRILNLGTYAE-RVIS-E-------EHPITSLSVSVDCKNFIVN-LNSQEIHMWDVAGKWEKPFK  431 (517)
Q Consensus       363 ~~~~~l~~~-~~dg~i~i~d~~~~~~-~~~~-~-------~~~i~~~~~s~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~  431 (517)
                      |+++.++++ ..++.|++||+.+.+. .... .       ......++|+|+++.++++ ..++.+.+||+.+. .....
T Consensus       166 ~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~-~~~~~  244 (300)
T TIGR03866       166 ADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY-EVLDY  244 (300)
T ss_pred             CCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC-cEEEE
Confidence            999988655 4689999999988762 2111 1       1123568899999986554 45678999999765 33332


Q ss_pred             EeCcccCceEEEeecCCCCCcEEEEe-cCCCcEEEEecCCCceeEEecCCCCCeeEEEecC
Q 042434          432 YTGHSQNKYVIRSCFGGLDGTFIASG-SENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNP  491 (517)
Q Consensus       432 ~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~  491 (517)
                      .. +...   +..+.++|+|++|+++ +.+|.|++||+.+++++..+... ...++++++|
T Consensus       245 ~~-~~~~---~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~  300 (300)
T TIGR03866       245 LL-VGQR---VWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP  300 (300)
T ss_pred             EE-eCCC---cceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence            22 1122   4455679999999886 46899999999999999999754 5568888875

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.4e-23  Score=187.16  Aligned_cols=265  Identities=16%  Similarity=0.217  Sum_probs=200.9

Q ss_pred             EeeCC-CcEEEEEecCCCeeeEEEEeccC-CCCEEEEEECCCCCeEEEEeC-CCeEEEEECCCCcEEEEeCCCCCceEEE
Q 042434          239 SSSSD-CSAIIWKVLEDSKLTLKHTLRSH-QNPVSFVAWSPDDTKLLTCGN-AEVLKLWDVETGICKHTFGDHGFIVSSC  315 (517)
Q Consensus       239 t~~~d-g~i~iw~~~~~~~~~~~~~~~~h-~~~v~~l~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~i  315 (517)
                      +++.| .++.+||+.++...   .++++. ...-.++..- .+.+++++.. ...+.+|.+...........-.++|.++
T Consensus        12 ssS~d~~~~~~~dl~TGt~~---~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al   87 (476)
T KOG0646|consen   12 SSSFDPINCIVWDLRTGTSL---LQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHAL   87 (476)
T ss_pred             ccCCCCcceeEEecCCCcee---EEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeee
Confidence            33444 45999999887433   344433 1111111111 2356766654 3489999987655544333557889999


Q ss_pred             EEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce---------
Q 042434          316 AWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA---------  386 (517)
Q Consensus       316 ~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---------  386 (517)
                      +-+|+|.+++.|+..|.  +|.|.+.+..+......|...|+++.|+.||.++++|+.||.|.+|++....         
T Consensus        88 ~s~n~G~~l~ag~i~g~--lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~  165 (476)
T KOG0646|consen   88 ASSNLGYFLLAGTISGN--LYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVK  165 (476)
T ss_pred             ecCCCceEEEeecccCc--EEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCcc
Confidence            99999999999989998  9999998766655557777899999999999999999999999999874321         


Q ss_pred             --EEeeccCCCeeEEEEcCC--CCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCc
Q 042434          387 --ERVISEEHPITSLSVSVD--CKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQ  462 (517)
Q Consensus       387 --~~~~~~~~~i~~~~~s~~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~  462 (517)
                        .....|.-+|+.+.+.+.  ..++++++.|.++++||+..+ .....+....    .+.++..+|.++.+++|+++|.
T Consensus       166 p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g-~LLlti~fp~----si~av~lDpae~~~yiGt~~G~  240 (476)
T KOG0646|consen  166 PLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG-VLLLTITFPS----SIKAVALDPAERVVYIGTEEGK  240 (476)
T ss_pred             ceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc-eeeEEEecCC----cceeEEEcccccEEEecCCcce
Confidence              344567778999888775  467999999999999999887 4444443222    3667777999999999999999


Q ss_pred             EEEEecCCC----------------ceeEEecCCCC--CeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434          463 IYIWNRRNS----------------KPIEILSGHSM--TVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS  515 (517)
Q Consensus       463 i~iwd~~~~----------------~~~~~~~~h~~--~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~  515 (517)
                      |.+.++...                ..+..+.||.+  .|+|++.+-|| .+|++|+.||.|+|||+.+.+
T Consensus       241 I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dg-tlLlSGd~dg~VcvWdi~S~Q  310 (476)
T KOG0646|consen  241 IFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDG-TLLLSGDEDGKVCVWDIYSKQ  310 (476)
T ss_pred             EEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCc-cEEEeeCCCCCEEEEecchHH
Confidence            999886532                34566778988  99999999999 799999999999999997654

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=7.8e-24  Score=173.29  Aligned_cols=246  Identities=19%  Similarity=0.282  Sum_probs=193.4

Q ss_pred             eccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCC---cEEEEeCCCCCceEEEEEeC--CCCeEEEeeCCCceeEEE
Q 042434          263 LRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETG---ICKHTFGDHGFIVSSCAWFP--DSKRLVCGSSDTEKGIFM  337 (517)
Q Consensus       263 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~~d~~v~i~~  337 (517)
                      -..|.+.|..+...--|+.||+|+.|++|+|+.++++   +.+.++.+|.++|+.++|..  -|.+|++++.||.  |.+
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgk--VIi   84 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGK--VII   84 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCce--EEE
Confidence            3568888988888888999999999999999999765   46778899999999999976  6999999999999  777


Q ss_pred             EeCCCCeeEe--eeCcCCCceEEEEEccC--CCEEEEEeCCCcEEEEECCCce-----EEeeccCCCeeEEEEcCC---C
Q 042434          338 CDCDGNEIKA--WRGTRIPKVLDLAVTPD--GENLISVLSDKDIRILNLGTYA-----ERVISEEHPITSLSVSVD---C  405 (517)
Q Consensus       338 ~~~~~~~~~~--~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~i~~~~~s~~---~  405 (517)
                      |...+..-..  ....|...|++++|.|.  |-.|++++.||.|.|.+.++..     .....|.-.+++++|.|.   |
T Consensus        85 Wke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g  164 (299)
T KOG1332|consen   85 WKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPG  164 (299)
T ss_pred             EecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCc
Confidence            7776543221  12334568999999986  4588999999999999987652     455567888999999995   4


Q ss_pred             -----------CEEEEEeCCCeEEEEEcCCC-CccceEEeCcccCceEEEeecCCCC----CcEEEEecCCCcEEEEecC
Q 042434          406 -----------KNFIVNLNSQEIHMWDVAGK-WEKPFKYTGHSQNKYVIRSCFGGLD----GTFIASGSENSQIYIWNRR  469 (517)
Q Consensus       406 -----------~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~~~i~~~~~s~~----~~~l~~~~~dg~i~iwd~~  469 (517)
                                 +.|++|+.|+.|++|+.... +.....+.+|..-   ++-++|.|.    -.+|++++.||++.||-..
T Consensus       165 ~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dw---VRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~  241 (299)
T KOG1332|consen  165 SLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDW---VRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD  241 (299)
T ss_pred             cccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchh---hhhhhhccccCCCceeeEEecCCCcEEEEEec
Confidence                       56999999999999999663 3444557778765   444444554    3589999999999999765


Q ss_pred             CC--c-eeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCC
Q 042434          470 NS--K-PIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQS  514 (517)
Q Consensus       470 ~~--~-~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~  514 (517)
                      ..  . ....+......+..+.|++.| ++|+.++.|+.|.+|.-+..
T Consensus       242 ~e~e~wk~tll~~f~~~~w~vSWS~sG-n~LaVs~GdNkvtlwke~~~  288 (299)
T KOG1332|consen  242 EEYEPWKKTLLEEFPDVVWRVSWSLSG-NILAVSGGDNKVTLWKENVD  288 (299)
T ss_pred             CccCcccccccccCCcceEEEEEeccc-cEEEEecCCcEEEEEEeCCC
Confidence            21  1 122233346789999999999 79999999999999987643

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.92  E-value=4e-23  Score=193.20  Aligned_cols=288  Identities=17%  Similarity=0.208  Sum_probs=227.3

Q ss_pred             EEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCC-----------CCeEEEEeCCCeEEEE
Q 042434          226 WFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPD-----------DTKLLTCGNAEVLKLW  294 (517)
Q Consensus       226 ~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~-----------~~~l~s~~~dg~i~iw  294 (517)
                      -++.|++....|...-.|..++|||+.+-++......+..|...|+.+.--|-           ..-+++|+.|++|++|
T Consensus       328 IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW  407 (1080)
T KOG1408|consen  328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLW  407 (1080)
T ss_pred             eEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEe
Confidence            46789999899999999999999999887777777777889998988876551           2358899999999999


Q ss_pred             ECCCCc---EEEE----------------------------------eCCCCCceEEEEEeCCCCeEEEeeCCCceeEEE
Q 042434          295 DVETGI---CKHT----------------------------------FGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM  337 (517)
Q Consensus       295 d~~~~~---~~~~----------------------------------~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~  337 (517)
                      |++.+.   ..+.                                  .-.....+.+++.+|+|++|++|...|+  +.+
T Consensus       408 ~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~Gn--lrV  485 (1080)
T KOG1408|consen  408 DLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGN--LRV  485 (1080)
T ss_pred             ecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCc--eEE
Confidence            987521   1100                                  0013457999999999999999999999  777


Q ss_pred             EeCCCCeeEeeeCcCCCceEEEEEccC---CCEEEEEeCCCcEEEEECCCce---EEeeccCCCeeEEEEcCCC--CEEE
Q 042434          338 CDCDGNEIKAWRGTRIPKVLDLAVTPD---GENLISVLSDKDIRILNLGTYA---ERVISEEHPITSLSVSVDC--KNFI  409 (517)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~s~~~--~~l~  409 (517)
                      +++..-....+...|...|.|+.++..   .++|++++.|..|+|||....-   ...-.|...|+++.|.-+|  ..++
T Consensus       486 y~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~Mi  565 (1080)
T KOG1408|consen  486 YDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMI  565 (1080)
T ss_pred             EEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEE
Confidence            787766666666677789999999863   4689999999999999997654   5566788899999999887  7789


Q ss_pred             EEeCCCeEEEEEcCCCCccceEEeCc--ccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecC---CCCCe
Q 042434          410 VNLNSQEIHMWDVAGKWEKPFKYTGH--SQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSG---HSMTV  484 (517)
Q Consensus       410 ~~~~d~~i~~~d~~~~~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---h~~~v  484 (517)
                      +++.|..|.+--.+.. .....+..+  ......+--+...|..+++++++.|..|+|||+.+|+..+.|++   |.+..
T Consensus       566 scGADksimFr~~qk~-~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~l  644 (1080)
T KOG1408|consen  566 SCGADKSIMFRVNQKA-SSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDL  644 (1080)
T ss_pred             eccCchhhheehhccc-cCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCce
Confidence            9999987755433321 222222222  22333444555689999999999999999999999999999985   67888


Q ss_pred             eEEEecCCCCcEEEEeeCCCcEEEeCCCCCCCC
Q 042434          485 NCVSWNPKRPKMLASASDDHTIRIWGPCQSSEV  517 (517)
Q Consensus       485 ~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~v  517 (517)
                      ..+...|.| .++|+...|.++.++|+.+++.|
T Consensus       645 IKv~lDPSg-iY~atScsdktl~~~Df~sgEcv  676 (1080)
T KOG1408|consen  645 IKVILDPSG-IYLATSCSDKTLCFVDFVSGECV  676 (1080)
T ss_pred             EEEEECCCc-cEEEEeecCCceEEEEeccchhh
Confidence            899999999 79999999999999999998764

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.92  E-value=8.8e-23  Score=190.45  Aligned_cols=335  Identities=16%  Similarity=0.241  Sum_probs=251.7

Q ss_pred             HHHHHhccccccCCCCCc-cccccCCCcccccCCCcc--------cEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEE
Q 042434          178 ETAVTSQIDSCQYHNSSV-AISLYEDHCCGRDQIPTE--------TVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAII  248 (517)
Q Consensus       178 ~~~~~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--------~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~i  248 (517)
                      .+.++.-+.....++... .++.+.|..+..+.....        .+....|..+.-+.+-|+|+++.+++-+..|-.++
T Consensus       263 l~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hl  342 (764)
T KOG1063|consen  263 LMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHL  342 (764)
T ss_pred             hcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEE
Confidence            344555566667777764 777788887776665443        23334456677999999999999999999999999


Q ss_pred             EEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCC----cEEEEeCCCCCceEEEEEeCCCCeE
Q 042434          249 WKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETG----ICKHTFGDHGFIVSSCAWFPDSKRL  324 (517)
Q Consensus       249 w~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~i~~~~~~~~l  324 (517)
                      |...............||.+.|++++|+|.|.+|++.|.|.+-+++-.-..    ..+.+-+-|+..++|++|-+....|
T Consensus       343 Wkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~F  422 (764)
T KOG1063|consen  343 WKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQF  422 (764)
T ss_pred             EeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCcee
Confidence            995555556666778999999999999999999999999999999864311    1233345688899999999866677


Q ss_pred             EEeeCCCceeEEEEeC-------------------------------CCCeeEe------------ee------------
Q 042434          325 VCGSSDTEKGIFMCDC-------------------------------DGNEIKA------------WR------------  349 (517)
Q Consensus       325 ~~~~~d~~v~i~~~~~-------------------------------~~~~~~~------------~~------------  349 (517)
                      ++|......+++....                               ..+....            ..            
T Consensus       423 VSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~e  502 (764)
T KOG1063|consen  423 VSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTE  502 (764)
T ss_pred             eecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccC
Confidence            7777776644442100                               0000000            00            


Q ss_pred             -------------------CcCCCceEEEEEccCCCEEEEEeCCC-----cEEEEECCCce--EEeeccCCCeeEEEEcC
Q 042434          350 -------------------GTRIPKVLDLAVTPDGENLISVLSDK-----DIRILNLGTYA--ERVISEEHPITSLSVSV  403 (517)
Q Consensus       350 -------------------~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~--~~~~~~~~~i~~~~~s~  403 (517)
                                         .+|.-.|.+++.+|+++.+++++...     .|++|+..+..  .....|.-.|+.++|||
T Consensus       503 PP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp  582 (764)
T KOG1063|consen  503 PPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP  582 (764)
T ss_pred             CChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC
Confidence                               03344789999999999999988654     69999998876  55678888999999999


Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCC--ceeEE--ecC
Q 042434          404 DCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS--KPIEI--LSG  479 (517)
Q Consensus       404 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~--~~~  479 (517)
                      ||++|++.+.|.++.+|...........+........+|..|.|+|++.+++|+|.|.+|++|.....  +.+..  ...
T Consensus       583 dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~  662 (764)
T KOG1063|consen  583 DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLK  662 (764)
T ss_pred             CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhc
Confidence            99999999999999999986554444444444455567888999999999999999999999998877  43333  234


Q ss_pred             CCCCeeEEEecCCC----CcEEEEeeCCCcEEEeCCC
Q 042434          480 HSMTVNCVSWNPKR----PKMLASASDDHTIRIWGPC  512 (517)
Q Consensus       480 h~~~v~~v~~~~~~----~~~l~s~~~dg~v~iw~~~  512 (517)
                      +..+|+.++|.|-.    ..+++.|-..|.|.+|...
T Consensus       663 ~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~  699 (764)
T KOG1063|consen  663 FSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK  699 (764)
T ss_pred             cCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence            78999999998742    1377888899999999965

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=8.5e-23  Score=196.58  Aligned_cols=244  Identities=18%  Similarity=0.298  Sum_probs=196.4

Q ss_pred             ccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCC-cEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC
Q 042434          264 RSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETG-ICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG  342 (517)
Q Consensus       264 ~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~  342 (517)
                      ..|...-+.++|.|+|++|++++.||.|++|+.... +...++..+...|.+++..  +.+|++|+.+++|.+|.++...
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~   87 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE   87 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence            468889999999999999999999999999987665 3344443477778877764  5599999999996555555432


Q ss_pred             CeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEE
Q 042434          343 NEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMW  420 (517)
Q Consensus       343 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~  420 (517)
                        ...+...-.-++.+++++.+|++++.|+.|-.|++.+..+..  ....+|..+|.++.++|++.++++.+.||.|++|
T Consensus        88 --~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw  165 (933)
T KOG1274|consen   88 --EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIW  165 (933)
T ss_pred             --ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEE
Confidence              221111122378999999999999999999999999998766  7788899999999999999999999999999999


Q ss_pred             EcCCCCccceEEeCcccC-----ceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecC--CCCCeeEEEecCCC
Q 042434          421 DVAGKWEKPFKYTGHSQN-----KYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSG--HSMTVNCVSWNPKR  493 (517)
Q Consensus       421 d~~~~~~~~~~~~~~~~~-----~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~v~~~~~~  493 (517)
                      |+.++ .....+.+....     ...+.-..|+|+|..++..+.|+.|++|+..++.....+..  +...+..+.|+|.|
T Consensus       166 ~~~~~-~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG  244 (933)
T KOG1274|consen  166 DLQDG-ILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNG  244 (933)
T ss_pred             Ecccc-hhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCC
Confidence            99876 444433332211     23345567799988888889999999999999998888864  44559999999999


Q ss_pred             CcEEEEeeCCCcEEEeCCCC
Q 042434          494 PKMLASASDDHTIRIWGPCQ  513 (517)
Q Consensus       494 ~~~l~s~~~dg~v~iw~~~~  513 (517)
                       .+||+++.||.|.|||+++
T Consensus       245 -~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  245 -KYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             -cEEeeeccCCcEEEEeccc
Confidence             8999999999999999984

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.92  E-value=1.8e-23  Score=192.98  Aligned_cols=138  Identities=20%  Similarity=0.293  Sum_probs=110.5

Q ss_pred             CCcEEEEECCCce------EEeeccCCCeeEEEEcC-CCCEEEEEeCCCeEEEEEcCCC------CccceEEeCcccCce
Q 042434          374 DKDIRILNLGTYA------ERVISEEHPITSLSVSV-DCKNFIVNLNSQEIHMWDVAGK------WEKPFKYTGHSQNKY  440 (517)
Q Consensus       374 dg~i~i~d~~~~~------~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~------~~~~~~~~~~~~~~~  440 (517)
                      .|.|.||+++..-      ......+..|+.+.|.| |...+++++.||.|++|.+..+      ......+.+|...++
T Consensus       602 gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~  681 (1012)
T KOG1445|consen  602 GGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKIT  681 (1012)
T ss_pred             CceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEE
Confidence            4667777765432      22334556789999999 7788999999999999998543      123345667766644


Q ss_pred             EEEeecCCC-CCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434          441 VIRSCFGGL-DGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS  515 (517)
Q Consensus       441 ~i~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~  515 (517)
                      .   +.|+| -...|++++.|-+|++||+.+++....+.+|.+.|.+++|+|+| ..+||.+.||+|++|+..+++
T Consensus       682 s---lRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdG-r~~AtVcKDg~~rVy~Prs~e  753 (1012)
T KOG1445|consen  682 S---LRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDG-RRIATVCKDGTLRVYEPRSRE  753 (1012)
T ss_pred             E---EEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCC-cceeeeecCceEEEeCCCCCC
Confidence            4   44455 35689999999999999999999999999999999999999999 799999999999999998765

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.92  E-value=1.1e-22  Score=173.12  Aligned_cols=274  Identities=19%  Similarity=0.275  Sum_probs=209.6

Q ss_pred             EEEEECCCCCEEEEeeCCCcEEEEEecCCC-------e--eeEEEEec-cCCCCEEEEEEC-------CCCCeEEEEeCC
Q 042434          226 WFVQFSNNGEYLASSSSDCSAIIWKVLEDS-------K--LTLKHTLR-SHQNPVSFVAWS-------PDDTKLLTCGNA  288 (517)
Q Consensus       226 ~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~-------~--~~~~~~~~-~h~~~v~~l~~s-------~~~~~l~s~~~d  288 (517)
                      ..+.|||||..|++-+.|..+.+|++....       .  .....++. .....|...+|-       |+..++++.+.+
T Consensus        53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~  132 (406)
T KOG2919|consen   53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD  132 (406)
T ss_pred             ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence            367899999999999999999999984211       0  01111111 124567778885       677899999999


Q ss_pred             CeEEEEECCCCcEEEEeCC--CC---CceEEEEEeCCCCeEEEeeCCCceeEEEEeCC--CCeeEee------eCcCCCc
Q 042434          289 EVLKLWDVETGICKHTFGD--HG---FIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD--GNEIKAW------RGTRIPK  355 (517)
Q Consensus       289 g~i~iwd~~~~~~~~~~~~--~~---~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~--~~~~~~~------~~~~~~~  355 (517)
                      .-|++||.-+|+....+..  |.   ....+++|+|||.+|++|....   |.++|+.  +......      .....+.
T Consensus       133 ~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrc---irvFdt~RpGr~c~vy~t~~~~k~gq~gi  209 (406)
T KOG2919|consen  133 QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRC---IRVFDTSRPGRDCPVYTTVTKGKFGQKGI  209 (406)
T ss_pred             CceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccce---EEEeeccCCCCCCcchhhhhcccccccce
Confidence            9999999999998877753  32   3456899999999999886654   6677763  3222111      1223457


Q ss_pred             eEEEEEccCCC-EEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCccceE
Q 042434          356 VLDLAVTPDGE-NLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLN-SQEIHMWDVAGKWEKPFK  431 (517)
Q Consensus       356 i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~  431 (517)
                      +.+++|+|-.. .+++++....+-||.-....  .....+.+.|+.+.|.++|+.+.+|.. +..|..||++....++..
T Consensus       210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~  289 (406)
T KOG2919|consen  210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYA  289 (406)
T ss_pred             eeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhh
Confidence            88999999655 88899988888887766555  556688899999999999999999987 779999999987778888


Q ss_pred             EeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCC-CceeEEecCCCCCeeEEEecCCCCcEEEEeeCC
Q 042434          432 YTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRN-SKPIEILSGHSMTVNCVSWNPKRPKMLASASDD  503 (517)
Q Consensus       432 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~d  503 (517)
                      +..|......-...-..|++++|++|+.||.|++||+++ |..+..+..|+..|+.++++|-- .++++++..
T Consensus       290 L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~m-pilatssGq  361 (406)
T KOG2919|consen  290 LERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIM-PILATSSGQ  361 (406)
T ss_pred             hhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCccc-ceeeeccCc
Confidence            887776322222223378999999999999999999998 78888888999999999999997 478887754

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=7.4e-23  Score=181.50  Aligned_cols=238  Identities=19%  Similarity=0.351  Sum_probs=176.1

Q ss_pred             CCCEEEEeeCCCcEEEEEecCCCeeeEEEE------------------eccCCCCEEEEEECCC-CCeEEEEeCCCeEEE
Q 042434          233 NGEYLASSSSDCSAIIWKVLEDSKLTLKHT------------------LRSHQNPVSFVAWSPD-DTKLLTCGNAEVLKL  293 (517)
Q Consensus       233 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~------------------~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~i  293 (517)
                      .|+|+|.|+.|..|.|||+.--....+..+                  -.+|+..|.+++|+.. .+.|||||.|.+|++
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l  270 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL  270 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence            368999999999999999853222222222                  2369999999999875 468899999999999


Q ss_pred             EECCCCcEEEEeCCCCCceEEEEEeCC-CCeEEEeeCCCceeEEEEeCCC--CeeEeeeCcCCCceEEEEEccCCCEEEE
Q 042434          294 WDVETGICKHTFGDHGFIVSSCAWFPD-SKRLVCGSSDTEKGIFMCDCDG--NEIKAWRGTRIPKVLDLAVTPDGENLIS  370 (517)
Q Consensus       294 wd~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~d~~v~i~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~  370 (517)
                      ||+.+|++..++..|+..|.++.|+|. ...|++|+.|++  +.+.|.+.  ..                          
T Consensus       271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~--V~l~D~R~~~~s--------------------------  322 (463)
T KOG0270|consen  271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGT--VALKDCRDPSNS--------------------------  322 (463)
T ss_pred             EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccce--EEeeeccCcccc--------------------------
Confidence            999999999999989999999999985 567777888887  44444331  11                          


Q ss_pred             EeCCCcEEEEECCCceEEeeccCCCeeEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCC
Q 042434          371 VLSDKDIRILNLGTYAERVISEEHPITSLSVSVD-CKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGL  449 (517)
Q Consensus       371 ~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~  449 (517)
                                      .......+.|..++|.|. ...+++++.||+++-+|++....++.....|...+..+....  .
T Consensus       323 ----------------~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~--~  384 (463)
T KOG0270|consen  323 ----------------GKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNI--Q  384 (463)
T ss_pred             ----------------CceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecC--C
Confidence                            111122334666667664 345777788899999999888788999999998866655433  3


Q ss_pred             CCcEEEEecCCCcEEEEecCCCceeEEe--cCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434          450 DGTFIASGSENSQIYIWNRRNSKPIEIL--SGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSE  516 (517)
Q Consensus       450 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~  516 (517)
                      ...++++++.|+.|++|++..-.+..+.  .-.-+...|.++.|+-+..++.||..+.++|||+.+...
T Consensus       385 ~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~  453 (463)
T KOG0270|consen  385 TPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP  453 (463)
T ss_pred             CCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence            3458999999999999998654432221  111244678888998888999999999999999987654

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=2e-22  Score=175.92  Aligned_cols=295  Identities=17%  Similarity=0.187  Sum_probs=223.4

Q ss_pred             cEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCC---CeeeEEEEe-ccCCCCEEEEEECCCCCeEEEEeCCC
Q 042434          214 TVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLED---SKLTLKHTL-RSHQNPVSFVAWSPDDTKLLTCGNAE  289 (517)
Q Consensus       214 ~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~---~~~~~~~~~-~~h~~~v~~l~~s~~~~~l~s~~~dg  289 (517)
                      +.+-+.+|.+.|+++.||.++++||+|+.|..+++|+++..   ...+++... ..|...|.|++|...++++++|+.++
T Consensus        48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~  127 (609)
T KOG4227|consen   48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG  127 (609)
T ss_pred             hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence            44567799999999999999999999999999999998521   111222222 34568999999999999999999999


Q ss_pred             eEEEEECCCCcEEEEeCC--CCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCe--eEee-eCcCCCceEEEEEccC
Q 042434          290 VLKLWDVETGICKHTFGD--HGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNE--IKAW-RGTRIPKVLDLAVTPD  364 (517)
Q Consensus       290 ~i~iwd~~~~~~~~~~~~--~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~--~~~~-~~~~~~~i~~~~~~~~  364 (517)
                      +|...|+++.+.+..+..  ..+.|..+..+|..+.|++.+.++.  |.+||.+..+  ...+ ..........+.|+|.
T Consensus       128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~--V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~  205 (609)
T KOG4227|consen  128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKL--VSFIDNRDRQNPISLVLPANSGKNFYTAEFHPE  205 (609)
T ss_pred             eeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCce--EEEEeccCCCCCCceeeecCCCccceeeeecCC
Confidence            999999999998887742  2458999999999999999999999  7778876433  2222 2222236788899997


Q ss_pred             CC-EEEEEeCCCcEEEEECCCceEEee---------ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeC
Q 042434          365 GE-NLISVLSDKDIRILNLGTYAERVI---------SEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTG  434 (517)
Q Consensus       365 ~~-~l~~~~~dg~i~i~d~~~~~~~~~---------~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~  434 (517)
                      .. ++++.+..+-+.+||.+.......         .......+..|+|+|..+++--....-.+||+-.....+.++..
T Consensus       206 ~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~  285 (609)
T KOG4227|consen  206 TPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDH  285 (609)
T ss_pred             CceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccC
Confidence            65 677888889999999987652111         11233467899999999998888888889998775344444442


Q ss_pred             ccc---CceEEEeecCCCCCcEEEEecCCCcEEEEecCC----------C-------------ceeEEecCCCCCeeEEE
Q 042434          435 HSQ---NKYVIRSCFGGLDGTFIASGSENSQIYIWNRRN----------S-------------KPIEILSGHSMTVNCVS  488 (517)
Q Consensus       435 ~~~---~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~----------~-------------~~~~~~~~h~~~v~~v~  488 (517)
                      ...   ....+.+++|- +...+++|+.+-.|++|.+..          |             +.+..++||...++.|.
T Consensus       286 N~~GY~N~~T~KS~~F~-~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVR  364 (609)
T KOG4227|consen  286 NPNGYCNIKTIKSMTFI-DDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVR  364 (609)
T ss_pred             CCCcceeeeeeeeeeee-cceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEeccccccccee
Confidence            221   22345555544 445599999999999998642          1             13456789999999999


Q ss_pred             ecCCCCcEEEEeeCCCcEEEeCCC
Q 042434          489 WNPKRPKMLASASDDHTIRIWGPC  512 (517)
Q Consensus       489 ~~~~~~~~l~s~~~dg~v~iw~~~  512 (517)
                      |+|.. ++|++.|-.+.++||..-
T Consensus       365 F~~H~-~~l~SSGVE~~~KlWS~~  387 (609)
T KOG4227|consen  365 FSQHN-NLLVSSGVENSFKLWSDH  387 (609)
T ss_pred             ecCCc-ceEeccchhhheeccccc
Confidence            99998 899999999999999753

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.91  E-value=1.4e-22  Score=188.17  Aligned_cols=272  Identities=15%  Similarity=0.206  Sum_probs=214.4

Q ss_pred             cEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEE
Q 042434          224 EVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKH  303 (517)
Q Consensus       224 ~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~  303 (517)
                      .|+.++|-|||..|+.+.. ..+.+||...+   ....++++|.+.|.|++|+.||+.+|+|+.|..|.+|+..-.- +-
T Consensus        14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG---~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG-~L   88 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDG---TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG-IL   88 (1081)
T ss_pred             chheeEECCCCceEEEecC-CEEEEEeCCCc---ccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc-ee
Confidence            8999999999998887754 47999999877   4558899999999999999999999999999999999864322 22


Q ss_pred             EeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECC
Q 042434          304 TFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLG  383 (517)
Q Consensus       304 ~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  383 (517)
                      .+ .|+..|.|+.|+|-...+++++-..   .-.|....+.+......  ..+.+++|..||.+++.|-.+|+|.+-+-.
T Consensus        89 kY-SH~D~IQCMsFNP~~h~LasCsLsd---FglWS~~qK~V~K~kss--~R~~~CsWtnDGqylalG~~nGTIsiRNk~  162 (1081)
T KOG1538|consen   89 KY-SHNDAIQCMSFNPITHQLASCSLSD---FGLWSPEQKSVSKHKSS--SRIICCSWTNDGQYLALGMFNGTISIRNKN  162 (1081)
T ss_pred             ee-ccCCeeeEeecCchHHHhhhcchhh---ccccChhhhhHHhhhhh--eeEEEeeecCCCcEEEEeccCceEEeecCC
Confidence            33 7899999999999999999998765   56677765554443332  378999999999999999999999998754


Q ss_pred             CceEEe----eccCCCeeEEEEcCCC-----CEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEE
Q 042434          384 TYAERV----ISEEHPITSLSVSVDC-----KNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFI  454 (517)
Q Consensus       384 ~~~~~~----~~~~~~i~~~~~s~~~-----~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  454 (517)
                      ......    -+...+|.+++|+|..     ..+++.....++.+|.+.+......+--     .+...|+.+-++|.|+
T Consensus       163 gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L-----~FdP~CisYf~NGEy~  237 (1081)
T KOG1538|consen  163 GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRAL-----NFDPCCISYFTNGEYI  237 (1081)
T ss_pred             CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccC-----CCCchhheeccCCcEE
Confidence            443222    2356789999999963     4577778888888888866411111111     1112344446899999


Q ss_pred             EEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434          455 ASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ  513 (517)
Q Consensus       455 ~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~  513 (517)
                      ..|+.|+.+.+|- +.|-.+.++......|+.++..|++ ..++.|..||+|..|++..
T Consensus       238 LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNs-Q~v~~GCqDGTiACyNl~f  294 (1081)
T KOG1538|consen  238 LLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNS-QYVVVGCQDGTIACYNLIF  294 (1081)
T ss_pred             EEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCC-ceEEEEEccCeeehhhhHH
Confidence            9999999999997 5588888887788999999999999 7999999999999988743

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.91  E-value=1.3e-22  Score=189.36  Aligned_cols=261  Identities=19%  Similarity=0.256  Sum_probs=202.6

Q ss_pred             CCCCCccccccCCCcccccCC-Ccc--cEEEeccccCcEEE-EEECC-CCCEEEEeeCCCcEEEEEecCCCeeeEEEEec
Q 042434          190 YHNSSVAISLYEDHCCGRDQI-PTE--TVQILTEHKNEVWF-VQFSN-NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLR  264 (517)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~l~~h~~~v~~-~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~  264 (517)
                      .......++.+.|.....|.. ..+  ....+.+|.+-|.+ +++-+ ++-.+++|+.|++|.+|.....   .+..++.
T Consensus        22 ~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~---~P~~~Lk   98 (745)
T KOG0301|consen   22 VTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQA---EPLYTLK   98 (745)
T ss_pred             ecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCC---Cchhhhh
Confidence            333334556665555443333 222  23457789998888 88876 5556999999999999998544   6678999


Q ss_pred             cCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCe
Q 042434          265 SHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNE  344 (517)
Q Consensus       265 ~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~  344 (517)
                      +|...|.|++...++. +++||.|.++++|..  +++...+.+|...|++++..|++ .+++|+.|.+  |++|.- +..
T Consensus        99 gH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKt--IklWk~-~~~  171 (745)
T KOG0301|consen   99 GHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKT--IKLWKG-GTL  171 (745)
T ss_pred             ccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcce--eeeccC-Cch
Confidence            9999999999888877 999999999999985  56777799999999999999988 8999999999  666665 566


Q ss_pred             eEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 042434          345 IKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVA  423 (517)
Q Consensus       345 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~  423 (517)
                      ++.+.+ |.+.|+.+++-+++ .+++++.||.|+.|++.... ....+|..-+.+++..+++..+++++.|+++++|+..
T Consensus       172 l~tf~g-HtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  172 LKTFSG-HTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD  249 (745)
T ss_pred             hhhhcc-chhheeeeEEecCC-CeEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence            677776 55699999999775 57899999999999995555 6777888899999989999999999999999999976


Q ss_pred             CCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecC
Q 042434          424 GKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRR  469 (517)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~  469 (517)
                         ...+.+.-.....+...++   ++|. |++|+.||.||||...
T Consensus       250 ---e~~q~I~lPttsiWsa~~L---~NgD-Ivvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  250 ---ECVQVITLPTTSIWSAKVL---LNGD-IVVGGSDGRVRVFTVD  288 (745)
T ss_pred             ---ceEEEEecCccceEEEEEe---eCCC-EEEeccCceEEEEEec
Confidence               3333333333333333332   3443 7788899999999765

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.1e-22  Score=181.18  Aligned_cols=314  Identities=14%  Similarity=0.142  Sum_probs=234.6

Q ss_pred             HHHHHHHHHHhCC-CCCCCCcchHHHHHH------HHHHhccccccCCCCCc--cccccCCCc--ccccCCCcccEEEec
Q 042434          151 RKRLLVELERLLP-PPEVVPERRLEHLVE------TAVTSQIDSCQYHNSSV--AISLYEDHC--CGRDQIPTETVQILT  219 (517)
Q Consensus       151 r~~l~~~~~~~~~-~~~~~~~~rl~~l~~------~~~~~q~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~l~  219 (517)
                      -+.++..-..++. ....+|+.+|.-..-      ..-...|.+..||+...  .++.++...  ...+.-....++.+.
T Consensus       175 ~d~lL~tt~~yi~s~s~~Lp~~tl~~krlkDaNa~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~  254 (514)
T KOG2055|consen  175 LDDLLKTTVGYIDSRSKLLPPGTLNIKRLKDANAAHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIH  254 (514)
T ss_pred             HHHHHHhhhcccccccccCCCceeeeEeecccccCCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeee
Confidence            3556665555565 455667766543111      11123455666777655  233333322  223444455677777


Q ss_pred             cccCcEEEEEECCCCC-EEEEeeCCCcEEEEEecCCCeeeEEEEeccCC-CCEEEEEECCCCCeEEEEeCCCeEEEEECC
Q 042434          220 EHKNEVWFVQFSNNGE-YLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQ-NPVSFVAWSPDDTKLLTCGNAEVLKLWDVE  297 (517)
Q Consensus       220 ~h~~~v~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~-~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~  297 (517)
                      --..+|.+++|.|+|. .+++++.....+.||+.+.+- ..+....++. ..+.....+|++++|+..|..|.|.+....
T Consensus       255 l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~-~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhak  333 (514)
T KOG2055|consen  255 LEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV-TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAK  333 (514)
T ss_pred             eccCccceeeecCCCceEEEecccceEEEEeecccccc-ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhh
Confidence            7889999999999999 889999999999999976533 3344444444 457788899999999999999999999999


Q ss_pred             CCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCC-eeEeeeCcCCCceEEEEEccCCCEEEEEeCCCc
Q 042434          298 TGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGN-EIKAWRGTRIPKVLDLAVTPDGENLISVLSDKD  376 (517)
Q Consensus       298 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  376 (517)
                      +++.+.++ ...+.|..+.|+.+++.|++++.+|.  ||+||++.. .+..+.....-.-++++.++++.++++|+..|.
T Consensus       334 T~eli~s~-KieG~v~~~~fsSdsk~l~~~~~~Ge--V~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~Gi  410 (514)
T KOG2055|consen  334 TKELITSF-KIEGVVSDFTFSSDSKELLASGGTGE--VYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGI  410 (514)
T ss_pred             hhhhhhee-eeccEEeeEEEecCCcEEEEEcCCce--EEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcce
Confidence            99998888 55678999999999999999999998  999999864 455665554445678899999999999999999


Q ss_pred             EEEEECCCce--------EEeeccCCCeeEEEEcCCCCEEEEEeC--CCeEEEEEcCCCCccceEEeCcccCceEEEeec
Q 042434          377 IRILNLGTYA--------ERVISEEHPITSLSVSVDCKNFIVNLN--SQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCF  446 (517)
Q Consensus       377 i~i~d~~~~~--------~~~~~~~~~i~~~~~s~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~  446 (517)
                      |.|||..+..        .........|+++.|++++..|+.++.  ...+++..+.+. .....++........++|+.
T Consensus       411 VNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~-TVFsNfP~~n~~vg~vtc~a  489 (514)
T KOG2055|consen  411 VNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSC-TVFSNFPTSNTKVGHVTCMA  489 (514)
T ss_pred             EEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccce-eeeccCCCCCCcccceEEEE
Confidence            9999976532        222334557999999999999988876  567888888664 33344445555666789999


Q ss_pred             CCCCCcEEEEecCCCcEEEEecC
Q 042434          447 GGLDGTFIASGSENSQIYIWNRR  469 (517)
Q Consensus       447 ~s~~~~~l~~~~~dg~i~iwd~~  469 (517)
                      |||.|.++|.|.++|.+.+|.+.
T Consensus       490 FSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  490 FSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             ecCCCceEEeecCCCceeeEeec
Confidence            99999999999999999999864

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.90  E-value=1.4e-22  Score=181.86  Aligned_cols=261  Identities=13%  Similarity=0.200  Sum_probs=197.7

Q ss_pred             cEEEEEECCCCCE-EEEeeCCCcEEEEEecCCC-eeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcE
Q 042434          224 EVWFVQFSNNGEY-LASSSSDCSAIIWKVLEDS-KLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGIC  301 (517)
Q Consensus       224 ~v~~~~~s~~~~~-l~t~~~dg~i~iw~~~~~~-~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~  301 (517)
                      .+.++.|+....+ +++.+.|..+++|.-.... .........+  ..-.|++......++++|+..+.|+|||++...+
T Consensus        36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~g--d~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~  113 (673)
T KOG4378|consen   36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTG--DNAFCVACASQSLYEISGGQSGCVKIWDLRAKLI  113 (673)
T ss_pred             cceeeeccccceEEEeecCCceeEEEecccCCCCccceeecccc--chHHHHhhhhcceeeeccCcCceeeehhhHHHHH
Confidence            3888999886642 2344568889999764221 1222222222  2344555555568999999999999999998888


Q ss_pred             EEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeE-eeeCcCCCceEEEEEccCCC-EEEEEeCCCcEEE
Q 042434          302 KHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIK-AWRGTRIPKVLDLAVTPDGE-NLISVLSDKDIRI  379 (517)
Q Consensus       302 ~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i  379 (517)
                      .+.+++|...|+++.++-...+|++++..|.  |.+....++.-. .+.......|.-+.|+|..+ +|.+++.+|.|.+
T Consensus       114 hr~lkdh~stvt~v~YN~~DeyiAsvs~gGd--iiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vtl  191 (673)
T KOG4378|consen  114 HRFLKDHQSTVTYVDYNNTDEYIASVSDGGD--IIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTL  191 (673)
T ss_pred             hhhccCCcceeEEEEecCCcceeEEeccCCc--EEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEE
Confidence            8889999999999999999999999999999  666666654433 33333344567899999877 5567889999999


Q ss_pred             EECCCce---EEeeccCCCeeEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEE
Q 042434          380 LNLGTYA---ERVISEEHPITSLSVSVD-CKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIA  455 (517)
Q Consensus       380 ~d~~~~~---~~~~~~~~~i~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  455 (517)
                      ||+....   .....|..+...++|+|. ...+++.+.|..|.+||.+...........|+     +..+.|+++|.+|+
T Consensus       192 wDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~P-----lstvaf~~~G~~L~  266 (673)
T KOG4378|consen  192 WDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHP-----LSTVAFSECGTYLC  266 (673)
T ss_pred             EeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCC-----cceeeecCCceEEE
Confidence            9998776   344568889999999995 45677788899999999986522222222222     56777899999999


Q ss_pred             EecCCCcEEEEecCCC-ceeEEecCCCCCeeEEEecCCC
Q 042434          456 SGSENSQIYIWNRRNS-KPIEILSGHSMTVNCVSWNPKR  493 (517)
Q Consensus       456 ~~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~v~~~~~~  493 (517)
                      +|+..|.|+.||++.. .++.++..|...|++++|-|..
T Consensus       267 aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  267 AGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             eecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence            9999999999999864 5899999999999999998763

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.90  E-value=9.3e-23  Score=168.90  Aligned_cols=289  Identities=20%  Similarity=0.279  Sum_probs=201.3

Q ss_pred             CCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEec-cCCCCEEEEEECCCCCeEEEEeCC
Q 042434          210 IPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLR-SHQNPVSFVAWSPDDTKLLTCGNA  288 (517)
Q Consensus       210 ~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~~~d  288 (517)
                      .|+.+..++++|.+.|+++.|-.+++ |.+|..-|.|++|++.+...   ...+. .|...|+.+.-.|+ ..+.+-+.|
T Consensus         2 ~pPdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~---~~~~r~~g~~~it~lq~~p~-d~l~tqgRd   76 (323)
T KOG0322|consen    2 VPPDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERD---LPLIRLFGRLFITNLQSIPN-DSLDTQGRD   76 (323)
T ss_pred             CCCCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCcc---chhhhhhccceeeceeecCC-cchhhcCCC
Confidence            46778889999999999999988876 89999999999999976533   34444 56788999988887 578888999


Q ss_pred             CeEEEEECCCCcEEEEeCCCCCceEEEEEeC-----CCC----eEEEeeCCCceeEEEEeCCCCeeEee----eCcCCCc
Q 042434          289 EVLKLWDVETGICKHTFGDHGFIVSSCAWFP-----DSK----RLVCGSSDTEKGIFMCDCDGNEIKAW----RGTRIPK  355 (517)
Q Consensus       289 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~-----~~~----~l~~~~~d~~v~i~~~~~~~~~~~~~----~~~~~~~  355 (517)
                      +.+.+|++.-+..+..   |.-.+.++.|.+     +++    .++.-+.... .+..-|.........    .....+.
T Consensus        77 ~~L~lw~ia~s~~i~i---~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsd-e~h~~D~g~~tqv~i~dd~~~~Klgs  152 (323)
T KOG0322|consen   77 PLLILWTIAYSAFISI---HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSD-ETHKQDGGDTTQVQIADDSERSKLGS  152 (323)
T ss_pred             ceEEEEEccCcceEEE---eeeeccccccccceeccCCCcchhheecCCcccc-hhhhhccCccceeEccCchhccccCc
Confidence            9999999977654432   222333333332     111    1222111111 011112111111111    1122345


Q ss_pred             eEEEEEcc-CCC--EEEEEeCCCcEEEEECCCce------------EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEE
Q 042434          356 VLDLAVTP-DGE--NLISVLSDKDIRILNLGTYA------------ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMW  420 (517)
Q Consensus       356 i~~~~~~~-~~~--~l~~~~~dg~i~i~d~~~~~------------~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~  420 (517)
                      +.+..+.. ++.  .+++|..+|.+.+||+.++.            .....+..++.++.+.+....=++++.+..+..|
T Consensus       153 vmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~  232 (323)
T KOG0322|consen  153 VMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMY  232 (323)
T ss_pred             eeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceee
Confidence            66666433 233  56788899999999998862            2344678899999999877777788888889999


Q ss_pred             EcCCC--Cccc-eEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEE
Q 042434          421 DVAGK--WEKP-FKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKML  497 (517)
Q Consensus       421 d~~~~--~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l  497 (517)
                      ++...  ...+ ....-...+   +.-+.+.||++.+|+++.|+.|+||+.++..++..++-|++.|++++|+|+. .++
T Consensus       233 Sl~~s~gslq~~~e~~lknpG---v~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~-~lm  308 (323)
T KOG0322|consen  233 SLNHSTGSLQIRKEITLKNPG---VSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDC-ELM  308 (323)
T ss_pred             eeccccCcccccceEEecCCC---ccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCC-chh
Confidence            88543  1111 111111222   2233337999999999999999999999999999999999999999999997 699


Q ss_pred             EEeeCCCcEEEeCC
Q 042434          498 ASASDDHTIRIWGP  511 (517)
Q Consensus       498 ~s~~~dg~v~iw~~  511 (517)
                      |++|.|+.|.+|++
T Consensus       309 AaaskD~rISLWkL  322 (323)
T KOG0322|consen  309 AAASKDARISLWKL  322 (323)
T ss_pred             hhccCCceEEeeec
Confidence            99999999999986

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.90  E-value=1.1e-21  Score=172.26  Aligned_cols=288  Identities=20%  Similarity=0.268  Sum_probs=214.0

Q ss_pred             ccCcEEEEEECCCCC-EEEEeeCCCcEEEEEecCC------CeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEE
Q 042434          221 HKNEVWFVQFSNNGE-YLASSSSDCSAIIWKVLED------SKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKL  293 (517)
Q Consensus       221 h~~~v~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~------~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i  293 (517)
                      ...+|..+.|.+++. .+|||+.|..|++|.++.+      ........+..|...|+++.|+|+|..||+|+.+|.|.+
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l   91 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL   91 (434)
T ss_pred             CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence            346899999999766 9999999999999988643      245667788999999999999999999999999999999


Q ss_pred             EECC--------C--------CcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceE
Q 042434          294 WDVE--------T--------GICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVL  357 (517)
Q Consensus       294 wd~~--------~--------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~  357 (517)
                      |...        +        ....+.+.+|...|..++|+|++.++++++.|..  +++||.....+......+...+.
T Consensus        92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns--~~l~Dv~~G~l~~~~~dh~~yvq  169 (434)
T KOG1009|consen   92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNS--VRLWDVHAGQLLAILDDHEHYVQ  169 (434)
T ss_pred             EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccce--EEEEEeccceeEeeccccccccc
Confidence            9765        2        1234456789999999999999999999999999  99999998888888877878999


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEECCCceE---------------------EeeccCC----CeeEEEEcCCCCEEEEEe
Q 042434          358 DLAVTPDGENLISVLSDKDIRILNLGTYAE---------------------RVISEEH----PITSLSVSVDCKNFIVNL  412 (517)
Q Consensus       358 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---------------------~~~~~~~----~i~~~~~s~~~~~l~~~~  412 (517)
                      .++|.|-++++++-+.|...+.+++.....                     ....|..    -...++|+|+|..+++..
T Consensus       170 gvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPa  249 (434)
T KOG1009|consen  170 GVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPA  249 (434)
T ss_pred             eeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccc
Confidence            999999999999999998777776654320                     0011111    235678999999988764


Q ss_pred             C----CC-----eEEEEEcCCCCccceEEeCcccCceEEEee---------------cCCCCCcEEEEecCCCcEEEEec
Q 042434          413 N----SQ-----EIHMWDVAGKWEKPFKYTGHSQNKYVIRSC---------------FGGLDGTFIASGSENSQIYIWNR  468 (517)
Q Consensus       413 ~----d~-----~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~---------------~~s~~~~~l~~~~~dg~i~iwd~  468 (517)
                      .    .+     ..++|+-.....+...+.+.......++++               +.-|-+-.++.++. ..|++||.
T Consensus       250 g~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyvydt  328 (434)
T KOG1009|consen  250 GLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDT  328 (434)
T ss_pred             ceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-ceEEEecc
Confidence            3    22     234555433323333333333322222221               11133344555554 57999999


Q ss_pred             CCCceeEEecC-CCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCC
Q 042434          469 RNSKPIEILSG-HSMTVNCVSWNPKRPKMLASASDDHTIRIWGPC  512 (517)
Q Consensus       469 ~~~~~~~~~~~-h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~  512 (517)
                      ++..++..... |-..|++++|+++| ..++..|.||...+-.+.
T Consensus       329 q~~~P~~~v~nihy~~iTDiaws~dg-~~l~vSS~DGyCS~vtfe  372 (434)
T KOG1009|consen  329 QTLEPLAVVDNIHYSAITDIAWSDDG-SVLLVSSTDGFCSLVTFE  372 (434)
T ss_pred             ccccceEEEeeeeeeeecceeecCCC-cEEEEeccCCceEEEEEc
Confidence            99888887764 88999999999999 688899999976654443

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.90  E-value=6.4e-23  Score=184.38  Aligned_cols=238  Identities=17%  Similarity=0.264  Sum_probs=197.9

Q ss_pred             ccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc
Q 042434          221 HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI  300 (517)
Q Consensus       221 h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~  300 (517)
                      ....|.+|..+|||+.|++|+.-.++.|||+.... ......+....-...+++.+||.+..++++.||.|.|||+.+..
T Consensus       464 rdnyiRSckL~pdgrtLivGGeastlsiWDLAapT-prikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~  542 (705)
T KOG0639|consen  464 RDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPT-PRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT  542 (705)
T ss_pred             cccceeeeEecCCCceEEeccccceeeeeeccCCC-cchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce
Confidence            35678889999999999999999999999997543 23334455445567889999999999999999999999999999


Q ss_pred             EEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC-CeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEE
Q 042434          301 CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG-NEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRI  379 (517)
Q Consensus       301 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  379 (517)
                      .++.|++|...+.||..++||..|-+|+-|++  +..||.+. .++.....  .+.|.++...|.+.++++|-.++.+.+
T Consensus       543 ~VrqfqGhtDGascIdis~dGtklWTGGlDnt--vRcWDlregrqlqqhdF--~SQIfSLg~cP~~dWlavGMens~vev  618 (705)
T KOG0639|consen  543 LVRQFQGHTDGASCIDISKDGTKLWTGGLDNT--VRCWDLREGRQLQQHDF--SSQIFSLGYCPTGDWLAVGMENSNVEV  618 (705)
T ss_pred             eeecccCCCCCceeEEecCCCceeecCCCccc--eeehhhhhhhhhhhhhh--hhhheecccCCCccceeeecccCcEEE
Confidence            99999999999999999999999999999999  88888874 33322222  247999999999999999999999999


Q ss_pred             EECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEec
Q 042434          380 LNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGS  458 (517)
Q Consensus       380 ~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  458 (517)
                      ....... ...-.|..-|.++.|.+.|+++++.+.|+-+..|...-+ ..++.....    ..+.+|-+|.|.+||++|+
T Consensus       619 lh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyG-asiFqskE~----SsVlsCDIS~ddkyIVTGS  693 (705)
T KOG0639|consen  619 LHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG-ASIFQSKES----SSVLSCDISFDDKYIVTGS  693 (705)
T ss_pred             EecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccc-cceeecccc----CcceeeeeccCceEEEecC
Confidence            9887766 566678888999999999999999999999999998765 333333222    2366777799999999999


Q ss_pred             CCCcEEEEec
Q 042434          459 ENSQIYIWNR  468 (517)
Q Consensus       459 ~dg~i~iwd~  468 (517)
                      .|..-.||.+
T Consensus       694 GdkkATVYeV  703 (705)
T KOG0639|consen  694 GDKKATVYEV  703 (705)
T ss_pred             CCcceEEEEE
Confidence            9988888864

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=8e-24  Score=198.24  Aligned_cols=236  Identities=19%  Similarity=0.273  Sum_probs=202.5

Q ss_pred             EEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEE
Q 042434          216 QILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWD  295 (517)
Q Consensus       216 ~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd  295 (517)
                      +.+..|...|.|+..-..++.+++|+.|..+-+|.+..   ...+..+.+|..+|.++.|+++..+|++|+.+|+|++||
T Consensus        22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~k---p~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wD   98 (825)
T KOG0267|consen   22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGK---PNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWD   98 (825)
T ss_pred             hhhhhhhhhhceeeeeccceeeccCCCceeeccccccC---CchhheeeccCCcceeeecCcchhhhcccccCCceeeee
Confidence            45667999999999877889999999999999999843   344456899999999999999999999999999999999


Q ss_pred             CCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCC-CCeeEeeeCcCCCceEEEEEccCCCEEEEEeCC
Q 042434          296 VETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD-GNEIKAWRGTRIPKVLDLAVTPDGENLISVLSD  374 (517)
Q Consensus       296 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  374 (517)
                      ++.++.++++.+|...+.++.|+|-+.+++.|+.|+.  +.+||.+ .++...+.+ +...+..+.|+|+|++++.++.|
T Consensus        99 leeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd--~~iwD~Rk~Gc~~~~~s-~~~vv~~l~lsP~Gr~v~~g~ed  175 (825)
T KOG0267|consen   99 LEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTD--LKIWDIRKKGCSHTYKS-HTRVVDVLRLSPDGRWVASGGED  175 (825)
T ss_pred             hhhhhhhhhhhccccCcceeeeccceEEecccccccc--ceehhhhccCceeeecC-CcceeEEEeecCCCceeeccCCc
Confidence            9999999999999999999999999999999999999  8889988 456666666 66689999999999999999999


Q ss_pred             CcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCc
Q 042434          375 KDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGT  452 (517)
Q Consensus       375 g~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  452 (517)
                      ..+++||...++  ..+..|...+.++.|+|..-.++.|+.|+++++||+++. ..+......   ...+.+..|+|++.
T Consensus       176 ~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf-e~I~s~~~~---~~~v~~~~fn~~~~  251 (825)
T KOG0267|consen  176 NTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF-EVISSGKPE---TDGVRSLAFNPDGK  251 (825)
T ss_pred             ceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeecccee-EEeeccCCc---cCCceeeeecCCce
Confidence            999999998887  455668899999999999999999999999999999754 222222222   33477788899999


Q ss_pred             EEEEecCCC
Q 042434          453 FIASGSENS  461 (517)
Q Consensus       453 ~l~~~~~dg  461 (517)
                      .+++|....
T Consensus       252 ~~~~G~q~s  260 (825)
T KOG0267|consen  252 IVLSGEQIS  260 (825)
T ss_pred             eeecCchhh
Confidence            999887654

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=1.4e-23  Score=196.58  Aligned_cols=253  Identities=17%  Similarity=0.278  Sum_probs=212.8

Q ss_pred             CCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceE
Q 042434          234 GEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVS  313 (517)
Q Consensus       234 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  313 (517)
                      +.+++.+..+-.+++|+..         .+..|...|.++..-..++.+++|+.|..+-+|.+....++..+.+|..+|.
T Consensus         4 ~~~~m~~~~~t~Lr~~~~~---------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIe   74 (825)
T KOG0267|consen    4 MEFLMKTKRATKLRVWDTR---------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIE   74 (825)
T ss_pred             ccccceeeeeeccccccch---------hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcce
Confidence            3445556666678888862         3456888899998877788999999999999999988888888899999999


Q ss_pred             EEEEeCCCCeEEEeeCCCceeEEEEeCCCCe-eEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEee
Q 042434          314 SCAWFPDSKRLVCGSSDTEKGIFMCDCDGNE-IKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVI  390 (517)
Q Consensus       314 ~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~  390 (517)
                      ++.|+++..+|++|+.+|+  |.+||+.... ++.+.++. ..+.++.|+|-+.+.+.|+.|+.+++||.+...  ....
T Consensus        75 Sl~f~~~E~Llaagsasgt--iK~wDleeAk~vrtLtgh~-~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~  151 (825)
T KOG0267|consen   75 SLTFDTSERLLAAGSASGT--IKVWDLEEAKIVRTLTGHL-LNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYK  151 (825)
T ss_pred             eeecCcchhhhcccccCCc--eeeeehhhhhhhhhhhccc-cCcceeeeccceEEeccccccccceehhhhccCceeeec
Confidence            9999999999999999999  8888987544 44444444 588999999999999999999999999998544  4445


Q ss_pred             ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCC
Q 042434          391 SEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRN  470 (517)
Q Consensus       391 ~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~  470 (517)
                      .|...+..+.|+|+|++++.++.|..+++||+..+ .....|..|.....   .+-++|..-++++|+.|+++++||+++
T Consensus       152 s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag-k~~~ef~~~e~~v~---sle~hp~e~Lla~Gs~d~tv~f~dlet  227 (825)
T KOG0267|consen  152 SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAG-KLSKEFKSHEGKVQ---SLEFHPLEVLLAPGSSDRTVRFWDLET  227 (825)
T ss_pred             CCcceeEEEeecCCCceeeccCCcceeeeeccccc-cccccccccccccc---ccccCchhhhhccCCCCceeeeeccce
Confidence            57778999999999999999999999999999777 77778888877644   444689999999999999999999999


Q ss_pred             CceeEEecCCCCCeeEEEecCCCCcEEEEeeCC
Q 042434          471 SKPIEILSGHSMTVNCVSWNPKRPKMLASASDD  503 (517)
Q Consensus       471 ~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~d  503 (517)
                      .+.+.........|.+.+|+|++ ..+.+|..+
T Consensus       228 fe~I~s~~~~~~~v~~~~fn~~~-~~~~~G~q~  259 (825)
T KOG0267|consen  228 FEVISSGKPETDGVRSLAFNPDG-KIVLSGEQI  259 (825)
T ss_pred             eEEeeccCCccCCceeeeecCCc-eeeecCchh
Confidence            99999888888999999999999 566666544

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=5.2e-23  Score=202.94  Aligned_cols=284  Identities=19%  Similarity=0.217  Sum_probs=216.1

Q ss_pred             EEEECCCCC-EEEEe----------eCCCcEEEEEecCCCe---eeEEEEeccCCCCEEEEEECCCCCe----EEEEeCC
Q 042434          227 FVQFSNNGE-YLASS----------SSDCSAIIWKVLEDSK---LTLKHTLRSHQNPVSFVAWSPDDTK----LLTCGNA  288 (517)
Q Consensus       227 ~~~~s~~~~-~l~t~----------~~dg~i~iw~~~~~~~---~~~~~~~~~h~~~v~~l~~s~~~~~----l~s~~~d  288 (517)
                      .++|||.+. ++|+|          +.+.++.||.+.....   ++.+..+. -....+.++|.+.+..    ||.|..|
T Consensus        11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed   89 (1049)
T KOG0307|consen   11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED   89 (1049)
T ss_pred             eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence            468999886 66655          3355667776642211   12222222 3466889999987765    8888999


Q ss_pred             CeEEEEECCC---C---cEEEEeCCCCCceEEEEEeCCCC-eEEEeeCCCceeEEEEeCCCCeeEee--eCcCCCceEEE
Q 042434          289 EVLKLWDVET---G---ICKHTFGDHGFIVSSCAWFPDSK-RLVCGSSDTEKGIFMCDCDGNEIKAW--RGTRIPKVLDL  359 (517)
Q Consensus       289 g~i~iwd~~~---~---~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~--~~~~~~~i~~~  359 (517)
                      |.|.+||...   +   ..+.+...|.+.|..+.|++... .+++|+.||.  |++||+..-.....  .....+.|.++
T Consensus        90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~ge--I~iWDlnn~~tP~~~~~~~~~~eI~~l  167 (1049)
T KOG0307|consen   90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGE--ILIWDLNKPETPFTPGSQAPPSEIKCL  167 (1049)
T ss_pred             CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCc--EEEeccCCcCCCCCCCCCCCcccceEe
Confidence            9999999865   2   24556778999999999999755 9999999999  99999885222111  12234579999


Q ss_pred             EEccCC-CEEEEEeCCCcEEEEECCCce--EEee--ccCCCeeEEEEcCCCC-EEEEEeCCC---eEEEEEcCCCCccce
Q 042434          360 AVTPDG-ENLISVLSDKDIRILNLGTYA--ERVI--SEEHPITSLSVSVDCK-NFIVNLNSQ---EIHMWDVAGKWEKPF  430 (517)
Q Consensus       360 ~~~~~~-~~l~~~~~dg~i~i~d~~~~~--~~~~--~~~~~i~~~~~s~~~~-~l~~~~~d~---~i~~~d~~~~~~~~~  430 (517)
                      +|+..- ..|++++.+|.+.|||++..+  ....  .....+..++|+|+.. .+++++.|.   .|.+||++......+
T Consensus       168 sWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k  247 (1049)
T KOG0307|consen  168 SWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLK  247 (1049)
T ss_pred             ccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchh
Confidence            998754 467788899999999999886  2222  2223578999999764 466666654   699999998878888


Q ss_pred             EEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeC
Q 042434          431 KYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWG  510 (517)
Q Consensus       431 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~  510 (517)
                      .+.+|..+...+.+|  ..|..++++++.|+.|.+|+.++++.+..+....+.+..+.|+|..+.+++.++.||.|.|+.
T Consensus       248 ~~~~H~~GilslsWc--~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~s  325 (1049)
T KOG0307|consen  248 ILEGHQRGILSLSWC--PQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYS  325 (1049)
T ss_pred             hhcccccceeeeccC--CCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeee
Confidence            888998885554443  345689999999999999999999999999988899999999999988999999999999999


Q ss_pred             CCCCC
Q 042434          511 PCQSS  515 (517)
Q Consensus       511 ~~~~~  515 (517)
                      +.+..
T Consensus       326 l~~~~  330 (1049)
T KOG0307|consen  326 LQGTD  330 (1049)
T ss_pred             eecCC
Confidence            87643

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.89  E-value=6e-22  Score=176.50  Aligned_cols=209  Identities=21%  Similarity=0.338  Sum_probs=171.0

Q ss_pred             ccEEEeccccCcEEEEEECCC-CCEEEEeeCCCcEEEEEecCCCe----eeEEEEeccCCCCEEEEEECCC-CCeEEEEe
Q 042434          213 ETVQILTEHKNEVWFVQFSNN-GEYLASSSSDCSAIIWKVLEDSK----LTLKHTLRSHQNPVSFVAWSPD-DTKLLTCG  286 (517)
Q Consensus       213 ~~~~~l~~h~~~v~~~~~s~~-~~~l~t~~~dg~i~iw~~~~~~~----~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~  286 (517)
                      .+-.+|.||.+.=+.++|++. .-.|++|+.|+.|.+||+.....    ..+...+.+|...|..++|++- ...+++++
T Consensus       168 ~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~  247 (422)
T KOG0264|consen  168 RPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVG  247 (422)
T ss_pred             CCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeec
Confidence            455589999999999999994 45899999999999999975443    5567788999999999999995 46788999


Q ss_pred             CCCeEEEEECC--CCcEEEEeCCCCCceEEEEEeC-CCCeEEEeeCCCceeEEEEeCCC--CeeEeeeCcCCCceEEEEE
Q 042434          287 NAEVLKLWDVE--TGICKHTFGDHGFIVSSCAWFP-DSKRLVCGSSDTEKGIFMCDCDG--NEIKAWRGTRIPKVLDLAV  361 (517)
Q Consensus       287 ~dg~i~iwd~~--~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~d~~v~i~~~~~~~--~~~~~~~~~~~~~i~~~~~  361 (517)
                      .|+.+.|||++  +.++.+...+|.+.|.|++|+| ++..||+|+.|++  |.+||++.  .++..+.++. ..|..+.|
T Consensus       248 dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~t--V~LwDlRnL~~~lh~~e~H~-dev~~V~W  324 (422)
T KOG0264|consen  248 DDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKT--VALWDLRNLNKPLHTFEGHE-DEVFQVEW  324 (422)
T ss_pred             CCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCc--EEEeechhcccCceeccCCC-cceEEEEe
Confidence            99999999999  5667777889999999999999 5668899999999  88888874  4555555554 68999999


Q ss_pred             ccCCC-EEEEEeCCCcEEEEECCCce----------------EEeeccCCCeeEEEEcCCCCE-EEEEeCCCeEEEEEcC
Q 042434          362 TPDGE-NLISVLSDKDIRILNLGTYA----------------ERVISEEHPITSLSVSVDCKN-FIVNLNSQEIHMWDVA  423 (517)
Q Consensus       362 ~~~~~-~l~~~~~dg~i~i~d~~~~~----------------~~~~~~~~~i~~~~~s~~~~~-l~~~~~d~~i~~~d~~  423 (517)
                      +|... .+++++.|+.+.+||+..-.                ...-+|...|..+.|+|+..+ +++.+.|+.+.||.+.
T Consensus       325 SPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  325 SPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             CCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            99765 77888999999999996532                112246668999999998766 5667789999999986


Q ss_pred             C
Q 042434          424 G  424 (517)
Q Consensus       424 ~  424 (517)
                      .
T Consensus       405 ~  405 (422)
T KOG0264|consen  405 E  405 (422)
T ss_pred             c
Confidence            3

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=1.1e-20  Score=176.19  Aligned_cols=245  Identities=16%  Similarity=0.193  Sum_probs=196.1

Q ss_pred             CCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEE-EEeCCC-CCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCC
Q 042434          266 HQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICK-HTFGDH-GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGN  343 (517)
Q Consensus       266 h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~-~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~  343 (517)
                      -..+|.+++|+.+.+.||.+-.||.|-+|++..+=.. ..+.++ ...|.+++|+ ++..|++.+.+|.  |..||+...
T Consensus        24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~--i~EwDl~~l  100 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGS--ITEWDLHTL  100 (691)
T ss_pred             eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCce--EEEEecccC
Confidence            4678999999999999999999999999999886433 344444 7789999999 5667888888998  999999865


Q ss_pred             eeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce----EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEE
Q 042434          344 EIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA----ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHM  419 (517)
Q Consensus       344 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~  419 (517)
                      ..........+.|.+++.+|.+..+++|+.||.+..++.....    .........+.+++|+|++..++.|+.||.|++
T Consensus       101 k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iri  180 (691)
T KOG2048|consen  101 KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRI  180 (691)
T ss_pred             ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEE
Confidence            5555555555789999999999999999999988888887766    233345688999999999999999999999999


Q ss_pred             EEcCCCCccce---EEeCccc-CceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCc
Q 042434          420 WDVAGKWEKPF---KYTGHSQ-NKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPK  495 (517)
Q Consensus       420 ~d~~~~~~~~~---~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~  495 (517)
                      ||...+.....   .+.+... ....+.++.+ -....|++|..-|+|.+||...|+++..+..|.+.|.+++..+++ .
T Consensus       181 wd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~-Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~-d  258 (691)
T KOG2048|consen  181 WDVKSGQTLHIITMQLDRLSKREPTIVWSVLF-LRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNE-D  258 (691)
T ss_pred             EEcCCCceEEEeeecccccccCCceEEEEEEE-eecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCC-C
Confidence            99987633221   1112222 2222333222 244579999999999999999999999999999999999999998 6


Q ss_pred             EEEEeeCCCcEEEeCCCCCC
Q 042434          496 MLASASDDHTIRIWGPCQSS  515 (517)
Q Consensus       496 ~l~s~~~dg~v~iw~~~~~~  515 (517)
                      .++++|.|+.|.-+...+.+
T Consensus       259 ~vfsaGvd~~ii~~~~~~~~  278 (691)
T KOG2048|consen  259 RVFSAGVDPKIIQYSLTTNK  278 (691)
T ss_pred             eEEEccCCCceEEEEecCCc
Confidence            89999999999888776653

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=4.5e-22  Score=178.54  Aligned_cols=298  Identities=25%  Similarity=0.375  Sum_probs=234.9

Q ss_pred             ccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCC--CCeEEEEeCCCe
Q 042434          213 ETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPD--DTKLLTCGNAEV  290 (517)
Q Consensus       213 ~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~--~~~l~s~~~dg~  290 (517)
                      .....|.+|.+.|..+.|+..|..|++||.|..|.+||+..+..  ...-..+|...|....|-|.  ...+++++.||.
T Consensus       133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~--~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq  210 (559)
T KOG1334|consen  133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSP--KLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ  210 (559)
T ss_pred             hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCc--ccccccccccchhhhhccCCCCCcCceeccccCc
Confidence            34567889999999999999999999999999999999975532  33344679999999899884  478999999999


Q ss_pred             EEEEECC-CCcE--EEEeCCCCCceEEEEEeCCC-CeEEEeeCCCceeEEEEeCCCCeeE---eeeCcCCC---ceEEEE
Q 042434          291 LKLWDVE-TGIC--KHTFGDHGFIVSSCAWFPDS-KRLVCGSSDTEKGIFMCDCDGNEIK---AWRGTRIP---KVLDLA  360 (517)
Q Consensus       291 i~iwd~~-~~~~--~~~~~~~~~~v~~i~~~~~~-~~l~~~~~d~~v~i~~~~~~~~~~~---~~~~~~~~---~i~~~~  360 (517)
                      +++=.+. ++.+  ...+..|.++|.-++.-|+. ..|.+++.|+.  +..+|++.....   ........   ....++
T Consensus       211 vr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~--v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia  288 (559)
T KOG1334|consen  211 VRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAV--VFHIDLRQDVPAEKFVCREADEKERVGLYTIA  288 (559)
T ss_pred             eeeeeeccccceecceecccccCccceeeecCCCCCcccccccccc--eeeeeeccCCccceeeeeccCCccceeeeeEe
Confidence            9987764 3333  23456889999999999964 56889999998  777777642211   11222222   467888


Q ss_pred             EccCCC-EEEEEeCCCcEEEEECCCceEE--------------eeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 042434          361 VTPDGE-NLISVLSDKDIRILNLGTYAER--------------VISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK  425 (517)
Q Consensus       361 ~~~~~~-~l~~~~~dg~i~i~d~~~~~~~--------------~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~  425 (517)
                      ..|... .+++++.|..+++||.+.....              .......|++++++.++.-++++..|-.|+++.-..+
T Consensus       289 ~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~  368 (559)
T KOG1334|consen  289 VDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMG  368 (559)
T ss_pred             cCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccc
Confidence            888766 8899999999999998764411              0123346899999999999999999999999954321


Q ss_pred             ------------CccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCC
Q 042434          426 ------------WEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKR  493 (517)
Q Consensus       426 ------------~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~  493 (517)
                                  ......+++|.....+-..-||.|...|+++|+.-|.|.||+-.+++.+..+.+....|+|+.-+|.-
T Consensus       369 ~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~  448 (559)
T KOG1334|consen  369 DGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHL  448 (559)
T ss_pred             cCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCC
Confidence                        11223388998877766667889999999999999999999999999999999877799999999999


Q ss_pred             CcEEEEeeCCCcEEEeCCCCCC
Q 042434          494 PKMLASASDDHTIRIWGPCQSS  515 (517)
Q Consensus       494 ~~~l~s~~~dg~v~iw~~~~~~  515 (517)
                      | +|||+|-|.-|+||.+.+.+
T Consensus       449 P-vLAsSGid~DVKIWTP~~~e  469 (559)
T KOG1334|consen  449 P-VLASSGIDHDVKIWTPLTAE  469 (559)
T ss_pred             c-hhhccCCccceeeecCCccc
Confidence            5 99999999999999985543

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=1.4e-20  Score=160.23  Aligned_cols=249  Identities=17%  Similarity=0.250  Sum_probs=177.4

Q ss_pred             EEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc-----EEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeE
Q 042434          261 HTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI-----CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGI  335 (517)
Q Consensus       261 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i  335 (517)
                      ..+++|.+.|++++|+.||++|++++.|++|++|++++..     +++.- -.-+..+.+.|.||.+-+++....|. .+
T Consensus        80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n-ve~dhpT~V~FapDc~s~vv~~~~g~-~l  157 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN-VEYDHPTRVVFAPDCKSVVVSVKRGN-KL  157 (420)
T ss_pred             hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcc-ccCCCceEEEECCCcceEEEEEccCC-EE
Confidence            4678999999999999999999999999999999997642     22211 12235688999999887766655443 15


Q ss_pred             EEEeCC----CC-ee--E-----eeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEc
Q 042434          336 FMCDCD----GN-EI--K-----AWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVS  402 (517)
Q Consensus       336 ~~~~~~----~~-~~--~-----~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s  402 (517)
                      ++|...    |. ..  .     .+...+.-.+..+.....+.++++++.|..|.+|+++... ...-.....-+..++|
T Consensus       158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~~aavS  237 (420)
T KOG2096|consen  158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQSSNYDAAVS  237 (420)
T ss_pred             EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeeccccccccceeeC
Confidence            555432    11 11  1     1222333456777788889999999999999999999544 3333344556778999


Q ss_pred             CCCCEEEEEeCCCeEEEEEcC---CC----CccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCC-----
Q 042434          403 VDCKNFIVNLNSQEIHMWDVA---GK----WEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRN-----  470 (517)
Q Consensus       403 ~~~~~l~~~~~d~~i~~~d~~---~~----~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~-----  470 (517)
                      |+|+++++++-...+++|.+-   .+    ...+..+.||...   +.+.+|+++...+++.+.||++++||..-     
T Consensus       238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~sa---V~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~  314 (420)
T KOG2096|consen  238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSA---VLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAG  314 (420)
T ss_pred             CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhh---eeeeeeCCCcceeEEEecCCcEEEeeccceEecC
Confidence            999999999999999999972   11    2345667788776   66777899999999999999999999752     


Q ss_pred             --CceeEEec----CCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434          471 --SKPIEILS----GHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSE  516 (517)
Q Consensus       471 --~~~~~~~~----~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~  516 (517)
                        .+.+.+..    .-.+.-..++.+|.| ..||. +....++++..++|+.
T Consensus       315 qDpk~Lk~g~~pl~aag~~p~RL~lsP~g-~~lA~-s~gs~l~~~~se~g~~  364 (420)
T KOG2096|consen  315 QDPKILKEGSAPLHAAGSEPVRLELSPSG-DSLAV-SFGSDLKVFASEDGKD  364 (420)
T ss_pred             CCchHhhcCCcchhhcCCCceEEEeCCCC-cEEEe-ecCCceEEEEcccCcc
Confidence              22333321    122334489999999 45543 4445688888777653

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.88  E-value=1.1e-20  Score=164.23  Aligned_cols=265  Identities=20%  Similarity=0.258  Sum_probs=195.3

Q ss_pred             EEEeccccCcEEEEEECCCC--CEEEEeeCCCcEEEEEecC-------------CCeeeEEEEeccCCCCEEEEEECCCC
Q 042434          215 VQILTEHKNEVWFVQFSNNG--EYLASSSSDCSAIIWKVLE-------------DSKLTLKHTLRSHQNPVSFVAWSPDD  279 (517)
Q Consensus       215 ~~~l~~h~~~v~~~~~s~~~--~~l~t~~~dg~i~iw~~~~-------------~~~~~~~~~~~~h~~~v~~l~~s~~~  279 (517)
                      -...-+|.+.++.+.-++-|  .+.|+=+..|.|.||++..             .....++.++.+|...=..++|||-.
T Consensus       144 ~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~  223 (440)
T KOG0302|consen  144 EMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIK  223 (440)
T ss_pred             cccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccc
Confidence            33445689999999888854  4666667899999999732             12346778899999999999999932


Q ss_pred             -CeEEEEeCCCeEEEEECCCCcEE---EEeCCCCCceEEEEEeCC-CCeEEEeeCCCceeEEEEeCCCC--eeEeeeCcC
Q 042434          280 -TKLLTCGNAEVLKLWDVETGICK---HTFGDHGFIVSSCAWFPD-SKRLVCGSSDTEKGIFMCDCDGN--EIKAWRGTR  352 (517)
Q Consensus       280 -~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~i~~~~~-~~~l~~~~~d~~v~i~~~~~~~~--~~~~~~~~~  352 (517)
                       ..|++|..-+.|++|...+|.-.   ..|.+|+..|-.++|+|. ...|++||.||+  |.+||.+..  ........+
T Consensus       224 ~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dgs--IrIWDiRs~~~~~~~~~kAh  301 (440)
T KOG0302|consen  224 TGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGS--IRIWDIRSGPKKAAVSTKAH  301 (440)
T ss_pred             ccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCce--EEEEEecCCCccceeEeecc
Confidence             35888888889999999887643   245679999999999996 558899999999  666676643  222333555


Q ss_pred             CCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-----EEeeccCCCeeEEEEcCC-CCEEEEEeCCCeEEEEEcCCCC
Q 042434          353 IPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-----ERVISEEHPITSLSVSVD-CKNFIVNLNSQEIHMWDVAGKW  426 (517)
Q Consensus       353 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~i~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~~  426 (517)
                      .+.|+.+.|+.+-.+|++|+.||+++|||++..+     ..+..|..+|+++.|+|. ...+++++.|..|.+||+....
T Consensus       302 ~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~  381 (440)
T KOG0302|consen  302 NSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEA  381 (440)
T ss_pred             CCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccC
Confidence            5689999999998899999999999999999876     367789999999999995 5678888899999999985431


Q ss_pred             ccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcE
Q 042434          427 EKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTI  506 (517)
Q Consensus       427 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v  506 (517)
                      .....      .         ..+     .   .+   +-|+. .+++....+ ...+..+.|++.-+.++++.+.|| +
T Consensus       382 D~ee~------~---------~~a-----~---~~---L~dlP-pQLLFVHqG-Qke~KevhWH~QiPG~lvsTa~dG-f  432 (440)
T KOG0302|consen  382 DEEEI------D---------QEA-----A---EG---LQDLP-PQLLFVHQG-QKEVKEVHWHRQIPGLLVSTAIDG-F  432 (440)
T ss_pred             Chhhh------c---------ccc-----c---cc---hhcCC-ceeEEEecc-hhHhhhheeccCCCCeEEEecccc-e
Confidence            10000      0         000     0   01   11322 233333332 457889999999888999999998 4


Q ss_pred             EEeC
Q 042434          507 RIWG  510 (517)
Q Consensus       507 ~iw~  510 (517)
                      .||.
T Consensus       433 nVfk  436 (440)
T KOG0302|consen  433 NVFK  436 (440)
T ss_pred             eEEE
Confidence            5554

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.88  E-value=5e-21  Score=175.91  Aligned_cols=243  Identities=19%  Similarity=0.293  Sum_probs=187.5

Q ss_pred             EEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCe-EEEeeCCCceeEEE
Q 042434          259 LKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKR-LVCGSSDTEKGIFM  337 (517)
Q Consensus       259 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~-l~~~~~d~~v~i~~  337 (517)
                      +...+.+|++.|.++...|.|.+|++|+.||+|+||.+.+|.|++++ ...+.|.|++|+|.+.. +++.+.++.  +.+
T Consensus       392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~-~~d~~I~~vaw~P~~~~~vLAvA~~~~--~~i  468 (733)
T KOG0650|consen  392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTV-QFDSEIRSVAWNPLSDLCVLAVAVGEC--VLI  468 (733)
T ss_pred             eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEE-eecceeEEEEecCCCCceeEEEEecCc--eEE
Confidence            34567899999999999999999999999999999999999999988 55678999999997653 233333333  332


Q ss_pred             EeCC-C----------------------CeeEee--------------eCcCCCceEEEEEccCCCEEEEEeCC---CcE
Q 042434          338 CDCD-G----------------------NEIKAW--------------RGTRIPKVLDLAVTPDGENLISVLSD---KDI  377 (517)
Q Consensus       338 ~~~~-~----------------------~~~~~~--------------~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i  377 (517)
                      .+.. |                      ..+..|              ...+...|..+.|+..|.+|++...+   ..|
T Consensus       469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V  548 (733)
T KOG0650|consen  469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV  548 (733)
T ss_pred             eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE
Confidence            2221 1                      000111              11233478899999999999988764   478


Q ss_pred             EEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEE
Q 042434          378 RILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIA  455 (517)
Q Consensus       378 ~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  455 (517)
                      .|+++....  ..+....+.+.++.|+|...+|++++. ..|++||+..+ ..+.++.   .+...+..+..+|.|.-|+
T Consensus       549 liHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kq-elvKkL~---tg~kwiS~msihp~GDnli  623 (733)
T KOG0650|consen  549 LIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQ-ELVKKLL---TGSKWISSMSIHPNGDNLI  623 (733)
T ss_pred             EEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHH-HHHHHHh---cCCeeeeeeeecCCCCeEE
Confidence            999998766  334456778999999999999888875 56999999764 3333332   2233477777799999999


Q ss_pred             EecCCCcEEEEecCCC-ceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeC
Q 042434          456 SGSENSQIYIWNRRNS-KPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWG  510 (517)
Q Consensus       456 ~~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~  510 (517)
                      .|+.|+.+..||+.-+ ++..++..|...+++|+||+.- .++++|++||++.|+.
T Consensus       624 ~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ry-PLfas~sdDgtv~Vfh  678 (733)
T KOG0650|consen  624 LGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRY-PLFASGSDDGTVIVFH  678 (733)
T ss_pred             EecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcccc-ceeeeecCCCcEEEEe
Confidence            9999999999998754 6888889999999999999999 5999999999999874

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.88  E-value=2.2e-20  Score=159.74  Aligned_cols=289  Identities=19%  Similarity=0.330  Sum_probs=211.9

Q ss_pred             EeccccCcEEEEEECC-----CCCEEEEeeCCCcEEEEEecCCCeeeEEEEec--cCCCCEEEEEECCC----CCeEEEE
Q 042434          217 ILTEHKNEVWFVQFSN-----NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLR--SHQNPVSFVAWSPD----DTKLLTC  285 (517)
Q Consensus       217 ~l~~h~~~v~~~~~s~-----~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~--~h~~~v~~l~~s~~----~~~l~s~  285 (517)
                      ...+|+.+|..++|++     ....+|+++. ..+.+|....+......+...  .|......++|+-|    +.++|+|
T Consensus        33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~  111 (385)
T KOG1034|consen   33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG  111 (385)
T ss_pred             hhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence            3457999999999985     2346666655 579999987655444444432  36777888899754    4689999


Q ss_pred             eCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCC-CCeEEEeeCCCceeEEEEeCCCCeeEeeeC---cCCCceEEEEE
Q 042434          286 GNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPD-SKRLVCGSSDTEKGIFMCDCDGNEIKAWRG---TRIPKVLDLAV  361 (517)
Q Consensus       286 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~---~~~~~i~~~~~  361 (517)
                      |.-|.|+|.|+.++++...+.+|+..|..+.+.|+ .++++++|.|..  |.+|+.++.......+   .|.+.|.++.|
T Consensus       112 G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~s--vRlwnI~~~~Cv~VfGG~egHrdeVLSvD~  189 (385)
T KOG1034|consen  112 GYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHS--VRLWNIQTDVCVAVFGGVEGHRDEVLSVDF  189 (385)
T ss_pred             cceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCce--EEEEeccCCeEEEEecccccccCcEEEEEE
Confidence            99999999999999999999999999999999996 468899999999  8888888765544433   45568999999


Q ss_pred             ccCCCEEEEEeCCCcEEEEECCCce-----EEee-------------------------ccCCCeeEEEEcCCCCEEEEE
Q 042434          362 TPDGENLISVLSDKDIRILNLGTYA-----ERVI-------------------------SEEHPITSLSVSVDCKNFIVN  411 (517)
Q Consensus       362 ~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~-------------------------~~~~~i~~~~~s~~~~~l~~~  411 (517)
                      +++|.++++++.|.++++|++...+     ....                         .|...|.|+.|-  |.++++-
T Consensus       190 ~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSk  267 (385)
T KOG1034|consen  190 SLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSK  267 (385)
T ss_pred             cCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeec
Confidence            9999999999999999999998433     0000                         011111122221  4678888


Q ss_pred             eCCCeEEEEEcCCCCcc-------------ceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCcee--EE
Q 042434          412 LNSQEIHMWDVAGKWEK-------------PFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPI--EI  476 (517)
Q Consensus       412 ~~d~~i~~~d~~~~~~~-------------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~--~~  476 (517)
                      +.++.|..|....-...             ...+.-.....+.+...+ .|-++.||.|...|.|++||++...+.  .+
T Consensus       268 scenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~-d~~~~~la~gnq~g~v~vwdL~~~ep~~~tt  346 (385)
T KOG1034|consen  268 SCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAF-DPWQKMLALGNQSGKVYVWDLDNNEPPKCTT  346 (385)
T ss_pred             ccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEee-cHHHHHHhhccCCCcEEEEECCCCCCccCce
Confidence            88999999987211111             111222223344444443 777899999999999999999987653  22


Q ss_pred             ec--CCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCC
Q 042434          477 LS--GHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPC  512 (517)
Q Consensus       477 ~~--~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~  512 (517)
                      +.  .-...|...+|+.|+ .+|+...+|++|.-||.-
T Consensus       347 l~~s~~~~tVRQ~sfS~dg-s~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  347 LTHSKSGSTVRQTSFSRDG-SILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             EEeccccceeeeeeecccC-cEEEEEeCCCcEEEEEee
Confidence            22  124679999999999 799999999999999854

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=1.1e-20  Score=162.35  Aligned_cols=273  Identities=14%  Similarity=0.195  Sum_probs=199.8

Q ss_pred             CEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECC--CCCeEEEEeCCCeEEEEECCCCcEEEEe--CCCC-
Q 042434          235 EYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP--DDTKLLTCGNAEVLKLWDVETGICKHTF--GDHG-  309 (517)
Q Consensus       235 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~-  309 (517)
                      ..+|++.+.|.|++||..++   .....+.++...+..++|..  ....+.+|+.||+|++||+++......+  ..+. 
T Consensus        41 ~~vav~lSngsv~lyd~~tg---~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~  117 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTG---QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSG  117 (376)
T ss_pred             eeEEEEecCCeEEEEeccch---hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCC
Confidence            56888889999999999765   45577888888888999976  4578899999999999999887654433  3443 


Q ss_pred             CceEEEEEeCCCCeEEEeeC--CCceeEEEEeCCC--CeeEeeeCcCCCceEEEEEccCC-CEEEEEeCCCcEEEEECCC
Q 042434          310 FIVSSCAWFPDSKRLVCGSS--DTEKGIFMCDCDG--NEIKAWRGTRIPKVLDLAVTPDG-ENLISVLSDKDIRILNLGT  384 (517)
Q Consensus       310 ~~v~~i~~~~~~~~l~~~~~--d~~v~i~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~  384 (517)
                      .+..|++.+-.++.+++|+.  +....+.+||.+.  +.+..+...|...|+++.|+|.. +.|++|+.||.|.+||+..
T Consensus       118 ~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~  197 (376)
T KOG1188|consen  118 TPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKK  197 (376)
T ss_pred             CcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCC
Confidence            56777777767888888764  2233477777764  44677888888899999999965 5899999999999999976


Q ss_pred             ce-----EEeeccCCCeeEEEEcCCC-CEEEEEeCCCeEEEEEcCCCCccceEEeCc----------ccCceEEEeecCC
Q 042434          385 YA-----ERVISEEHPITSLSVSVDC-KNFIVNLNSQEIHMWDVAGKWEKPFKYTGH----------SQNKYVIRSCFGG  448 (517)
Q Consensus       385 ~~-----~~~~~~~~~i~~~~~s~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~----------~~~~~~i~~~~~s  448 (517)
                      ..     ...+.+...|.++.|..++ +.+.+-+...+..+|++..+. ....+...          ....+.|.... +
T Consensus       198 d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~-~~~~~~~~~~~~~d~r~~~~~dY~I~~~~-~  275 (376)
T KOG1188|consen  198 DNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS-EETWLENPDVSADDLRKEDNCDYVINEHS-P  275 (376)
T ss_pred             CcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC-hhhcccCccchhhhHHhhhhhhheeeccc-C
Confidence            54     4566777889999999876 458888889999999997763 22222111          12234454443 3


Q ss_pred             CCCcEEEEecC-CCcEEEEecC---C---CceeEEecC-CCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434          449 LDGTFIASGSE-NSQIYIWNRR---N---SKPIEILSG-HSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ  513 (517)
Q Consensus       449 ~~~~~l~~~~~-dg~i~iwd~~---~---~~~~~~~~~-h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~  513 (517)
                      .++...+.++. -|...++-+.   +   .+.+..+.+ |...|+++.|...+ .++.|||.||.+.+|....
T Consensus       276 ~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~-~~l~TGGEDG~l~~Wk~~d  347 (376)
T KOG1188|consen  276 GDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKN-DVLYTGGEDGLLQAWKVED  347 (376)
T ss_pred             CCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhccc-ceeeccCCCceEEEEecCC
Confidence            44555555544 4555555332   2   345566666 77889999998777 7999999999999999543

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.87  E-value=1.5e-20  Score=174.06  Aligned_cols=252  Identities=18%  Similarity=0.252  Sum_probs=187.7

Q ss_pred             EEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCC-CeEEEEeCCCeEEE
Q 042434          215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDD-TKLLTCGNAEVLKL  293 (517)
Q Consensus       215 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~i  293 (517)
                      +.....|.+.|..+.|-|....|++++.|.++++||+....- .-...+.+|.+.|.+++|.|++ ..+++|+.||.|.|
T Consensus        93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l-~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~ill  171 (720)
T KOG0321|consen   93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL-VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILL  171 (720)
T ss_pred             hcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee-ecceeecccccccchhhhccCCCcceeeccCCCcEEE
Confidence            466678999999999999777899999999999999975532 2223588999999999999965 56789999999999


Q ss_pred             EECCCCc---------------------------EEEEeCCCCCceEE---EEEeCCCCeEEEeeC-CCceeEEEEeCCC
Q 042434          294 WDVETGI---------------------------CKHTFGDHGFIVSS---CAWFPDSKRLVCGSS-DTEKGIFMCDCDG  342 (517)
Q Consensus       294 wd~~~~~---------------------------~~~~~~~~~~~v~~---i~~~~~~~~l~~~~~-d~~v~i~~~~~~~  342 (517)
                      ||+.-..                           .++....+...|.+   +.+..|...|++++. |+.  |.+||++.
T Consensus       172 WD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~--iKVWDLRk  249 (720)
T KOG0321|consen  172 WDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADST--IKVWDLRK  249 (720)
T ss_pred             EEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcc--eEEEeecc
Confidence            9985221                           01112234455555   666678889999887 888  77777763


Q ss_pred             CeeE---------eeeCc--CCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceEE-eecc-CCC----eeEEEEcCCC
Q 042434          343 NEIK---------AWRGT--RIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAER-VISE-EHP----ITSLSVSVDC  405 (517)
Q Consensus       343 ~~~~---------~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~-~~~----i~~~~~s~~~  405 (517)
                      ....         .+..+  ..-.+.++.....|.++++.+.|+.|++|++.+.... ...+ ...    -..-..+|++
T Consensus       250 ~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~  329 (720)
T KOG0321|consen  250 NYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDD  329 (720)
T ss_pred             cccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCC
Confidence            2211         11111  1225778888888999999999999999999886521 1111 111    2234568999


Q ss_pred             CEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCC
Q 042434          406 KNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS  471 (517)
Q Consensus       406 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  471 (517)
                      .++++|+.|...++|.+...+.....+.+|...+..+.++. ++.+. ++++++|..+++|++..+
T Consensus       330 ~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~p-S~~t~-v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  330 CSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLP-SATTP-VATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             ceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecc-ccCCC-ceeeccCcceEEEeccCc
Confidence            99999999999999999998888888999998877777665 55555 555599999999998654

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.87  E-value=9.2e-21  Score=168.87  Aligned_cols=252  Identities=15%  Similarity=0.235  Sum_probs=190.9

Q ss_pred             EEEeccCCCCEEEEEECCCC--CeEEEEeCCCeEEEEECCCC----cEEEEeCCCCCceEEEEEeCC-CCeEEEeeCCCc
Q 042434          260 KHTLRSHQNPVSFVAWSPDD--TKLLTCGNAEVLKLWDVETG----ICKHTFGDHGFIVSSCAWFPD-SKRLVCGSSDTE  332 (517)
Q Consensus       260 ~~~~~~h~~~v~~l~~s~~~--~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~d~~  332 (517)
                      ......+.+.|++++|+|..  +.+|+|..-|+|-+||+.+.    ..+..+..|..+|.++.|+|. ...+++.+.||+
T Consensus       179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt  258 (498)
T KOG4328|consen  179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT  258 (498)
T ss_pred             cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence            34556688999999999965  57888999999999999532    345677899999999999994 568999999999


Q ss_pred             eeEEEEeCCCCeeEeeeCc--CCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce---EEeeccCCCeeEEEEcCCC-C
Q 042434          333 KGIFMCDCDGNEIKAWRGT--RIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA---ERVISEEHPITSLSVSVDC-K  406 (517)
Q Consensus       333 v~i~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~s~~~-~  406 (517)
                        |..-|..+.....+...  ....+.++.|+.+...++.+..=|...+||+++..   .....|...|.+++++|.. .
T Consensus       259 --iR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~  336 (498)
T KOG4328|consen  259 --IRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPW  336 (498)
T ss_pred             --eeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCch
Confidence              66666665444333222  23367788899888889999888899999999876   3445677799999999954 5


Q ss_pred             EEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecC----CCceeEEecCCCC
Q 042434          407 NFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRR----NSKPIEILSGHSM  482 (517)
Q Consensus       407 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~----~~~~~~~~~~h~~  482 (517)
                      ++++++.|++.+|||++........+.........+.+++|||.+..|++.+.|..|+|||..    .-.+..++. |..
T Consensus       337 ~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~  415 (498)
T KOG4328|consen  337 FLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNN  415 (498)
T ss_pred             heeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccC
Confidence            688899999999999976422221111122223457888889998889999999999999983    334455554 322


Q ss_pred             ------CeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434          483 ------TVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS  515 (517)
Q Consensus       483 ------~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~  515 (517)
                            .....+|.|+. .++++|-.-..|-|+|...++
T Consensus       416 ~t~RwlT~fKA~W~P~~-~li~vg~~~r~IDv~~~~~~q  453 (498)
T KOG4328|consen  416 RTGRWLTPFKAAWDPDY-NLIVVGRYPRPIDVFDGNGGQ  453 (498)
T ss_pred             cccccccchhheeCCCc-cEEEEeccCcceeEEcCCCCE
Confidence                  23456899998 799999998899999988765

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.87  E-value=5.2e-21  Score=177.91  Aligned_cols=269  Identities=16%  Similarity=0.253  Sum_probs=202.1

Q ss_pred             ccccCCCCCccc-cccCCCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEec
Q 042434          186 DSCQYHNSSVAI-SLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLR  264 (517)
Q Consensus       186 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~  264 (517)
                      ....|.|+...+ -...+....++...+..++++++|++.|+|++|+.||+.+|+|+.|..|.+|+..-.+.+     -.
T Consensus        16 ~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-----kY   90 (1081)
T KOG1538|consen   16 NDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-----KY   90 (1081)
T ss_pred             heeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-----ee
Confidence            334466666533 334445567788889999999999999999999999999999999999999986432211     13


Q ss_pred             cCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCe
Q 042434          265 SHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNE  344 (517)
Q Consensus       265 ~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~  344 (517)
                      .|++.|.|+.|+|-...|++++-+ ..-+|..+.....+ . .....+.+++|..||.+++.|-.+|++.+.  +..+.+
T Consensus        91 SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K-~-kss~R~~~CsWtnDGqylalG~~nGTIsiR--Nk~gEe  165 (1081)
T KOG1538|consen   91 SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSK-H-KSSSRIICCSWTNDGQYLALGMFNGTISIR--NKNGEE  165 (1081)
T ss_pred             ccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHh-h-hhheeEEEeeecCCCcEEEEeccCceEEee--cCCCCc
Confidence            599999999999999999998765 46788865543221 1 235678899999999999999999996555  444433


Q ss_pred             e--EeeeCcCCCceEEEEEccCC-----CEEEEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCe
Q 042434          345 I--KAWRGTRIPKVLDLAVTPDG-----ENLISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQE  416 (517)
Q Consensus       345 ~--~~~~~~~~~~i~~~~~~~~~-----~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~  416 (517)
                      .  ..-.++..++|.+++|+|..     ..+++.....++.+|.+.... ......+....++.+.++|.++++|+.|+.
T Consensus       166 k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~  245 (1081)
T KOG1538|consen  166 KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQ  245 (1081)
T ss_pred             ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCc
Confidence            3  23334556789999999963     378888888899999887655 224445566789999999999999999999


Q ss_pred             EEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecC
Q 042434          417 IHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRR  469 (517)
Q Consensus       417 i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~  469 (517)
                      +.+|.-.+  ...-+...   -...|..+...|++++++.|+.||+|-.|++.
T Consensus       246 L~~fTR~G--vrLGTvg~---~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  246 LSLFTRDG--VRLGTVGE---QDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             eEEEeecC--eEEeeccc---cceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence            99998543  22222222   22334555569999999999999999999864

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=1.9e-20  Score=170.40  Aligned_cols=207  Identities=20%  Similarity=0.251  Sum_probs=155.1

Q ss_pred             cEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECC--CCCeEEEEeCCCeE
Q 042434          214 TVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP--DDTKLLTCGNAEVL  291 (517)
Q Consensus       214 ~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~--~~~~l~s~~~dg~i  291 (517)
                      ..+.+.||++.|+|+.|+.+|.+|++||.|-.+.|||.-..+.  ....-.+|...|.++.|-|  +++.+++|+.|..|
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kl--lhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i  119 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKL--LHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI  119 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcce--eeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence            4567899999999999999999999999999999999863322  2233468999999999998  45788999999999


Q ss_pred             EEEECCCC----------cEEEEeCCCCCceEEEEEeCCC-CeEEEeeCCCceeEEEEeCCCCe--eEee------e--C
Q 042434          292 KLWDVETG----------ICKHTFGDHGFIVSSCAWFPDS-KRLVCGSSDTEKGIFMCDCDGNE--IKAW------R--G  350 (517)
Q Consensus       292 ~iwd~~~~----------~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~d~~v~i~~~~~~~~~--~~~~------~--~  350 (517)
                      +++|+...          ...+.+..|...|..++-.|++ ..+.+++.||+  +..+|.+...  ....      .  .
T Consensus       120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGt--irQyDiREph~c~p~~~~~~~l~ny~  197 (758)
T KOG1310|consen  120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGT--IRQYDIREPHVCNPDEDCPSILVNYN  197 (758)
T ss_pred             EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcc--eeeecccCCccCCccccccHHHHHhc
Confidence            99999742          2344566788999999999988 78999999999  7777765311  1100      0  0


Q ss_pred             cCCCceEEEEEccCCC-EEEEEeCCCcEEEEECCCce-------E------------Eee--ccC-----------CCee
Q 042434          351 TRIPKVLDLAVTPDGE-NLISVLSDKDIRILNLGTYA-------E------------RVI--SEE-----------HPIT  397 (517)
Q Consensus       351 ~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~-------~------------~~~--~~~-----------~~i~  397 (517)
                      ...-...++.++|... +|++|+.|...++||.+...       .            ..+  .+.           ..++
T Consensus       198 ~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t  277 (758)
T KOG1310|consen  198 PQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCT  277 (758)
T ss_pred             hhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeE
Confidence            1112467889999654 88899999999999953211       0            000  000           0256


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 042434          398 SLSVSVDCKNFIVNLNSQEIHMWDVAG  424 (517)
Q Consensus       398 ~~~~s~~~~~l~~~~~d~~i~~~d~~~  424 (517)
                      -++|+|+|.-+++.-....|+++|+..
T Consensus       278 ~vtfnpNGtElLvs~~gEhVYlfdvn~  304 (758)
T KOG1310|consen  278 YVTFNPNGTELLVSWGGEHVYLFDVNE  304 (758)
T ss_pred             EEEECCCCcEEEEeeCCeEEEEEeecC
Confidence            688999999999988888899998743

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.87  E-value=1.8e-21  Score=185.30  Aligned_cols=288  Identities=18%  Similarity=0.269  Sum_probs=219.3

Q ss_pred             ccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEE
Q 042434          213 ETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLK  292 (517)
Q Consensus       213 ~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~  292 (517)
                      +.++.+.||.++|+|+.|...|.++++|+.|..++||..++.   .+.....||.+.|+.++.+.++..+++++.|..|+
T Consensus       181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~---~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIr  257 (1113)
T KOG0644|consen  181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA---RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIR  257 (1113)
T ss_pred             HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccch---hhhccCCCCccccchhccchhhhhhhhcccCceEE
Confidence            345567899999999999999999999999999999998765   55678999999999999999999999999999999


Q ss_pred             EEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCC--eeEeeeCcCCCceEEEEEccCCCEEEE
Q 042434          293 LWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGN--EIKAWRGTRIPKVLDLAVTPDGENLIS  370 (517)
Q Consensus       293 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~  370 (517)
                      +|.+.++.++..+.+|++.|++++|+|-.    +.+.||++++|.|+....  ............+.++.+-..+..+++
T Consensus       258 vWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~T  333 (1113)
T KOG0644|consen  258 VWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLT  333 (1113)
T ss_pred             EEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccc
Confidence            99999999999999999999999999965    778899966666663211  111111222235677778888889999


Q ss_pred             EeCCCcEEEEECCCceEEeeccCCCeeEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCC
Q 042434          371 VLSDKDIRILNLGTYAERVISEEHPITSLSVSVD-CKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGL  449 (517)
Q Consensus       371 ~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~  449 (517)
                      ++.|+.-..|......    .+...+.-+..+.+ ..+.+++-.+-.+.+|++.++ .......+|....+++..-.|  
T Consensus       334 gs~d~ea~n~e~~~l~----~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g-~l~H~l~ghsd~~yvLd~Hpf--  406 (1113)
T KOG0644|consen  334 GSRDGEARNHEFEQLA----WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG-QLLHNLMGHSDEVYVLDVHPF--  406 (1113)
T ss_pred             ccCCcccccchhhHhh----hhccceEEEeccccccccceeeeeeeEeeeeecccc-hhhhhhcccccceeeeeecCC--
Confidence            9999988877654322    00011111111111 134555556778899999887 777778888888777766432  


Q ss_pred             CCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434          450 DGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS  515 (517)
Q Consensus       450 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~  515 (517)
                      +.+...+++.||...|||+-.|.+++...-..+.+..-+|+++| ..++...+-|.+.|.....++
T Consensus       407 n~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdg-ts~~lsd~hgql~i~g~gqs~  471 (1113)
T KOG0644|consen  407 NPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDG-TSIALSDDHGQLYILGTGQSK  471 (1113)
T ss_pred             CcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCC-ceEecCCCCCceEEeccCCCc
Confidence            44566789999999999999998877665435677788999999 677777777899998876654

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=2e-20  Score=159.03  Aligned_cols=240  Identities=15%  Similarity=0.188  Sum_probs=175.7

Q ss_pred             EEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCC-CCeeEee
Q 042434          270 VSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD-GNEIKAW  348 (517)
Q Consensus       270 v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~-~~~~~~~  348 (517)
                      ..|+.|++.|.+||+|+.||.|.|||+.|...-+.+.+|..+|++++|++||+.|++++.|..  +..||.. +..++.+
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~s--i~lwDl~~gs~l~ri  103 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWS--IKLWDLLKGSPLKRI  103 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCce--eEEEeccCCCceeEE
Confidence            789999999999999999999999999999988899999999999999999999999999999  8888876 4555655


Q ss_pred             eCcCCCceEEEEEccCCC-EEEEEeCCCcEEEEECCCceEEeeccC------CCeeEEEEcCCCCEEEEEeCCCeEEEEE
Q 042434          349 RGTRIPKVLDLAVTPDGE-NLISVLSDKDIRILNLGTYAERVISEE------HPITSLSVSVDCKNFIVNLNSQEIHMWD  421 (517)
Q Consensus       349 ~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~i~~~~~s~~~~~l~~~~~d~~i~~~d  421 (517)
                      ....  +|....|+|... ..++.-.+..-.+.++...........      ....+..|.+.|+++++|+..|.+.+||
T Consensus       104 rf~s--pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~  181 (405)
T KOG1273|consen  104 RFDS--PVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYD  181 (405)
T ss_pred             EccC--ccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEe
Confidence            5544  899999999654 333333344455555554442222211      1223346889999999999999999999


Q ss_pred             cCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCC-------c--eeEEecC--CCCCeeEEEec
Q 042434          422 VAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS-------K--PIEILSG--HSMTVNCVSWN  490 (517)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-------~--~~~~~~~--h~~~v~~v~~~  490 (517)
                      ..+. ..+..+.-..  ...|..+.++..|++++.-+.|..|+.|+++.-       +  +.+.++.  ....=.+++|+
T Consensus       182 a~t~-e~vas~rits--~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs  258 (405)
T KOG1273|consen  182 AETL-ECVASFRITS--VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFS  258 (405)
T ss_pred             cchh-eeeeeeeech--heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeec
Confidence            9776 4444443322  234666667889999999999999999997621       1  1122211  12334678899


Q ss_pred             CCCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434          491 PKRPKMLASASDDHTIRIWGPCQSSE  516 (517)
Q Consensus       491 ~~~~~~l~s~~~dg~v~iw~~~~~~~  516 (517)
                      .+|..++++...-..++||.-..|.-
T Consensus       259 ~dgeYv~a~s~~aHaLYIWE~~~GsL  284 (405)
T KOG1273|consen  259 GDGEYVCAGSARAHALYIWEKSIGSL  284 (405)
T ss_pred             CCccEEEeccccceeEEEEecCCcce
Confidence            99954444444556799999887753

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=2.8e-19  Score=172.15  Aligned_cols=289  Identities=20%  Similarity=0.244  Sum_probs=208.1

Q ss_pred             cccCcEEEEEECCCCCEEEEeeCCCcEEEEEecC-CCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCC
Q 042434          220 EHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLE-DSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVET  298 (517)
Q Consensus       220 ~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~-~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~  298 (517)
                      .|.-.++|.++||+++++|+|..||.|.+|.-.. ...-.....+.-|...|.+++|+++|.+|++||..|.+.+|.+++
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T  282 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET  282 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence            4777799999999999999999999999997543 222234456778999999999999999999999999999999999


Q ss_pred             CcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCee----Eee-------eCcCCCceEEEEEccCCCE
Q 042434          299 GICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEI----KAW-------RGTRIPKVLDLAVTPDGEN  367 (517)
Q Consensus       299 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~----~~~-------~~~~~~~i~~~~~~~~~~~  367 (517)
                      ++ .+-+..-.++|..+.++||+.+.+....|+.  |.+.......+    ..+       .....+-.+.++++|.-+.
T Consensus       283 ~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNq--I~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~  359 (792)
T KOG1963|consen  283 GK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQ--IHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNS  359 (792)
T ss_pred             CC-cccccccCCeeEEEEEcCCCCeEEEEecCce--EEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCc
Confidence            98 4455567899999999999999999999999  44444422111    111       1112345677899998888


Q ss_pred             EEEEeCCCcEEEEECCCceEE----eec---------cCCCeeEEEEcCCCCEEEEEe--------CCC--eEEEEEcCC
Q 042434          368 LISVLSDKDIRILNLGTYAER----VIS---------EEHPITSLSVSVDCKNFIVNL--------NSQ--EIHMWDVAG  424 (517)
Q Consensus       368 l~~~~~dg~i~i~d~~~~~~~----~~~---------~~~~i~~~~~s~~~~~l~~~~--------~d~--~i~~~d~~~  424 (517)
                      ++..+..|.|.+||+-+....    ...         ..-.++.++.+..|.++++.-        .||  .+++|-...
T Consensus       360 ~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~  439 (792)
T KOG1963|consen  360 LVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNP  439 (792)
T ss_pred             eeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcC
Confidence            888999999999999775511    111         112467777777888888763        233  578887654


Q ss_pred             C---CccceEEeCcccCceEEEeecCCCCC-cEEEEecCCCcEEEEecCCC----------ceeEEecCCCCCeeEEEec
Q 042434          425 K---WEKPFKYTGHSQNKYVIRSCFGGLDG-TFIASGSENSQIYIWNRRNS----------KPIEILSGHSMTVNCVSWN  490 (517)
Q Consensus       425 ~---~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~----------~~~~~~~~h~~~v~~v~~~  490 (517)
                      .   +........ +.....+..++.++.. ...++++.||.+++|-+...          .+...-.-|..++++++|+
T Consensus       440 ~~kt~~L~T~I~~-PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs  518 (792)
T KOG1963|consen  440 NSKTFILNTKINN-PHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFS  518 (792)
T ss_pred             CcceeEEEEEEec-CCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhc
Confidence            3   112222222 2222233333334433 38999999999999987322          2333323478999999999


Q ss_pred             CCCCcEEEEeeCCCcEEEeCCCCC
Q 042434          491 PKRPKMLASASDDHTIRIWGPCQS  514 (517)
Q Consensus       491 ~~~~~~l~s~~~dg~v~iw~~~~~  514 (517)
                      .||  -++++|.|++|.+||..+.
T Consensus       519 ~dG--slla~s~~~~Itiwd~~~~  540 (792)
T KOG1963|consen  519 QDG--SLLAVSFDDTITIWDYDTK  540 (792)
T ss_pred             CCC--cEEEEecCCEEEEecCCCh
Confidence            999  3677888999999999873

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.86  E-value=4.2e-21  Score=175.49  Aligned_cols=261  Identities=16%  Similarity=0.248  Sum_probs=184.3

Q ss_pred             EEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecC-----CCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCe
Q 042434          216 QILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLE-----DSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEV  290 (517)
Q Consensus       216 ~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~-----~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~  290 (517)
                      .++..|.+.|..++|.|....|++++.||++.+|+++.     ...+.++.+|.+|.++|.|++..+++..+++|+.||+
T Consensus       288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~  367 (577)
T KOG0642|consen  288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT  367 (577)
T ss_pred             eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence            37788999999999999999999999999999999932     3456788999999999999999999999999999999


Q ss_pred             EEEEECCCC----------cEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCC-CceEEE
Q 042434          291 LKLWDVETG----------ICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRI-PKVLDL  359 (517)
Q Consensus       291 i~iwd~~~~----------~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~-~~i~~~  359 (517)
                      |+.|++...          .....+.+|...|+.+++++....|++++.||+  ++.|...+.....+..... +...++
T Consensus       368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgT--vr~w~~~~~~~~~f~~~~e~g~Plsv  445 (577)
T KOG0642|consen  368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGT--VRLWEPTEESPCTFGEPKEHGYPLSV  445 (577)
T ss_pred             eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCce--EEeeccCCcCccccCCccccCCcceE
Confidence            999966421          233466799999999999999999999999999  7777766544322222111 122233


Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCc
Q 042434          360 AVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNK  439 (517)
Q Consensus       360 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~  439 (517)
                      .+....  .+....+.....+++.+..        .+..                  +.++.-... .      +. ...
T Consensus       446 d~~ss~--~a~~~~s~~~~~~~~~~~e--------v~s~------------------~~~~~s~~~-~------~~-~~~  489 (577)
T KOG0642|consen  446 DRTSSR--PAHSLASFRFGYTSIDDME--------VVSD------------------LLIFESSAS-P------GP-RRY  489 (577)
T ss_pred             eeccch--hHhhhhhcccccccchhhh--------hhhh------------------eeeccccCC-C------cc-ccc
Confidence            332211  1111111112222211111        0000                  111110000 0      00 000


Q ss_pred             eEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434          440 YVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS  515 (517)
Q Consensus       440 ~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~  515 (517)
                      ..+..+.++|.+.+.+++.+|+.|+++|..++++++....|...++++++.|+| -+|++++.||.+++|++....
T Consensus       490 ~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng-~~l~s~s~d~sv~l~kld~k~  564 (577)
T KOG0642|consen  490 PQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNG-PYLMSGSHDGSVRLWKLDVKT  564 (577)
T ss_pred             CccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCC-ceEEeecCCceeehhhccchh
Confidence            112233337888899999999999999999999999999999999999999999 599999999999999986543

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.85  E-value=2.7e-18  Score=162.01  Aligned_cols=272  Identities=13%  Similarity=0.122  Sum_probs=176.7

Q ss_pred             EEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEe-CCCeEEEEECC-CCcE--EEEeCCCCCceE
Q 042434          238 ASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCG-NAEVLKLWDVE-TGIC--KHTFGDHGFIVS  313 (517)
Q Consensus       238 ~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~iwd~~-~~~~--~~~~~~~~~~v~  313 (517)
                      ++...++.|.+|++.+...+.....+. +.+....++++|++++|++++ .++.|.+|++. +++.  .... .......
T Consensus         6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p~   83 (330)
T PRK11028          6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSPT   83 (330)
T ss_pred             EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCce
Confidence            344678999999996545555666654 346678899999999987764 47899999996 3432  2222 2334567


Q ss_pred             EEEEeCCCCeEEEeeC-CCceeEEEEeCCCCeeEeee-CcCCCceEEEEEccCCCEEEEEe-CCCcEEEEECCCce-E--
Q 042434          314 SCAWFPDSKRLVCGSS-DTEKGIFMCDCDGNEIKAWR-GTRIPKVLDLAVTPDGENLISVL-SDKDIRILNLGTYA-E--  387 (517)
Q Consensus       314 ~i~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~-~--  387 (517)
                      .++++|+++++++++. ++.+.++..+..+....... .........++++|+++++++++ .++.|.+||+.+.. .  
T Consensus        84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~  163 (330)
T PRK11028         84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA  163 (330)
T ss_pred             EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence            8999999999888775 66644444433232111111 11123467788999999886555 56899999997632 1  


Q ss_pred             -----EeeccCCCeeEEEEcCCCCEEEEEeC-CCeEEEEEcCCC---CccceEEeCcc----cCceEEEeecCCCCCcEE
Q 042434          388 -----RVISEEHPITSLSVSVDCKNFIVNLN-SQEIHMWDVAGK---WEKPFKYTGHS----QNKYVIRSCFGGLDGTFI  454 (517)
Q Consensus       388 -----~~~~~~~~i~~~~~s~~~~~l~~~~~-d~~i~~~d~~~~---~~~~~~~~~~~----~~~~~i~~~~~s~~~~~l  454 (517)
                           ...........+.|+|++++++++.. ++.|.+|++...   ......+....    ...+. ..+.++|+|+++
T Consensus       164 ~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~i~~~pdg~~l  242 (330)
T PRK11028        164 QEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWA-ADIHITPDGRHL  242 (330)
T ss_pred             cCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccc-eeEEECCCCCEE
Confidence                 11223445678999999999988876 899999999632   11222222111    11111 224458999999


Q ss_pred             EEecC-CCcEEEEecCCCceeEEecCC---CCCeeEEEecCCCCcEEEEeeCCCcEEEeCCC
Q 042434          455 ASGSE-NSQIYIWNRRNSKPIEILSGH---SMTVNCVSWNPKRPKMLASASDDHTIRIWGPC  512 (517)
Q Consensus       455 ~~~~~-dg~i~iwd~~~~~~~~~~~~h---~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~  512 (517)
                      +++.. ++.|.+|++.......++.++   ......++++|+|..++++...+++|.+|+++
T Consensus       243 yv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        243 YACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             EEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            99864 689999998654322222222   13456899999995444455569999999875

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.85  E-value=1.5e-20  Score=160.66  Aligned_cols=243  Identities=17%  Similarity=0.294  Sum_probs=183.5

Q ss_pred             cccCcEEEEEECCC----CCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCC-CeEEEEeCCCeEEEE
Q 042434          220 EHKNEVWFVQFSNN----GEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDD-TKLLTCGNAEVLKLW  294 (517)
Q Consensus       220 ~h~~~v~~~~~s~~----~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iw  294 (517)
                      .|...-+.++|+-+    ..++|+|+.-|.|+|.|+.++   +....+.+|...|..+.|+|+. ++++++|.|.+|++|
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~---~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlw  163 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSG---QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLW  163 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchh---hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEE
Confidence            47788888999764    348899999999999999655   5667889999999999999976 788999999999999


Q ss_pred             ECCCCcEEEEeC---CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEe-------ee---------------
Q 042434          295 DVETGICKHTFG---DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKA-------WR---------------  349 (517)
Q Consensus       295 d~~~~~~~~~~~---~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~-------~~---------------  349 (517)
                      ++++..|+..|.   +|...|.++.|+++|.+|++++.|.+  +.+|++..+....       +.               
T Consensus       164 nI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhs--lk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~f  241 (385)
T KOG1034|consen  164 NIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHS--LKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHF  241 (385)
T ss_pred             eccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcce--EEEEecChhHHhhhhhhhcccCCCCccCcCCcccccc
Confidence            999999999885   78999999999999999999999999  6666665221110       00               


Q ss_pred             ------CcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceEE---e---------e----ccCCC--eeEEEEcCCC
Q 042434          350 ------GTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAER---V---------I----SEEHP--ITSLSVSVDC  405 (517)
Q Consensus       350 ------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~---------~----~~~~~--i~~~~~s~~~  405 (517)
                            ..|...|.|+.|-  |+++++-+.++.|..|........   .         .    .....  ....+|.|-+
T Consensus       242 p~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~  319 (385)
T KOG1034|consen  242 PDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQ  319 (385)
T ss_pred             ccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHH
Confidence                  0111122223332  578888899999999987322210   0         0    11112  2345667778


Q ss_pred             CEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecC
Q 042434          406 KNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRR  469 (517)
Q Consensus       406 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~  469 (517)
                      +.++.|...|.+.+||++...........|......++..+++.||.+|+..++|++|.-||..
T Consensus       320 ~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  320 KMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             HHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            8999999999999999987644344444455556667788889999999999999999999964

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.85  E-value=1.8e-17  Score=163.13  Aligned_cols=291  Identities=30%  Similarity=0.451  Sum_probs=222.5

Q ss_pred             EEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCC-CCEEEEEE-CCCCC-eEEEEeC-CCeE
Q 042434          216 QILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQ-NPVSFVAW-SPDDT-KLLTCGN-AEVL  291 (517)
Q Consensus       216 ~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~-~~v~~l~~-s~~~~-~l~s~~~-dg~i  291 (517)
                      ..+..|...+.++.+.+.+..++.++.|+.+.+|+...+.  .....+..+. ..+..+.+ ++++. .++..+. |+.+
T Consensus        59 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  136 (466)
T COG2319          59 LLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE--KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTV  136 (466)
T ss_pred             heeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc--eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccE
Confidence            3567899999999999999999999999999999997553  2344555533 37777777 88887 5555445 9999


Q ss_pred             EEEECCC-CcEEEEeCCCCCceEEEEEeCCCCeEEEeeC-CCceeEEEEeCCC-CeeEeeeCcCCCceEEEEEccCCC-E
Q 042434          292 KLWDVET-GICKHTFGDHGFIVSSCAWFPDSKRLVCGSS-DTEKGIFMCDCDG-NEIKAWRGTRIPKVLDLAVTPDGE-N  367 (517)
Q Consensus       292 ~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-d~~v~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~-~  367 (517)
                      .+|+... ......+..|...|..++|+|++..+++++. ++.  +..|+... ..+..... +...+.+++|+|++. .
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~  213 (466)
T COG2319         137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGT--IKLWDLRTGKPLSTLAG-HTDPVSSLAFSPDGGLL  213 (466)
T ss_pred             EEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCc--eEEEEcCCCceEEeecc-CCCceEEEEEcCCcceE
Confidence            9999988 7788888899999999999999998888885 888  88888885 33344444 556899999999998 5


Q ss_pred             EEEEeCCCcEEEEECCCceE---EeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEe
Q 042434          368 LISVLSDKDIRILNLGTYAE---RVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRS  444 (517)
Q Consensus       368 l~~~~~dg~i~i~d~~~~~~---~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~  444 (517)
                      +++++.|+.+++||......   ....+.... ...|+|++..+++++.++.+++|++.........+.+|...   +..
T Consensus       214 ~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~---v~~  289 (466)
T COG2319         214 IASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSS---VLS  289 (466)
T ss_pred             EEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCcc---EEE
Confidence            55559999999999885552   233344443 33899999889999999999999998664423333344333   445


Q ss_pred             ecCCCCCcEEEEecCCCcEEEEecCCCceeEEec--CCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434          445 CFGGLDGTFIASGSENSQIYIWNRRNSKPIEILS--GHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS  515 (517)
Q Consensus       445 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~  515 (517)
                      +.+.|++..+++++.|+.+.+||..+........  .|...+..+.|.+++..+..++..|+.+.+|+.....
T Consensus       290 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  362 (466)
T COG2319         290 VAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK  362 (466)
T ss_pred             EEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence            5668888888889999999999999888777766  7888899999943322344444688999999987653

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.85  E-value=1.3e-19  Score=163.18  Aligned_cols=265  Identities=12%  Similarity=0.088  Sum_probs=192.9

Q ss_pred             CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCe-EEEEeCCCeEEEEECCC--CcEEEEeCCCCCceEEEEEeC
Q 042434          243 DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTK-LLTCGNAEVLKLWDVET--GICKHTFGDHGFIVSSCAWFP  319 (517)
Q Consensus       243 dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~-l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~i~~~~  319 (517)
                      ...+++||+............. ....+.++.|+....+ +++.+.|..+++|.-..  ++....-......-.|++...
T Consensus        11 gd~~kl~D~s~~~~~~~~~~~t-~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s   89 (673)
T KOG4378|consen   11 GDKTKLSDFSDLETKSEYVHQT-AEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACAS   89 (673)
T ss_pred             CCceEEeecccccCccccccCC-CCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhh
Confidence            3479999986443222111111 1234899999876642 23445677899997432  222222222223445666666


Q ss_pred             CCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEeec--cCCCe
Q 042434          320 DSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVIS--EEHPI  396 (517)
Q Consensus       320 ~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~--~~~~i  396 (517)
                      ...++++|+..+.  |.+||.+.+.+..+...|.+.|+++.++....+|++++..|.|.|..+.++. ...+.  .+..+
T Consensus        90 ~S~y~~sgG~~~~--Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsv  167 (673)
T KOG4378|consen   90 QSLYEISGGQSGC--VKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSV  167 (673)
T ss_pred             cceeeeccCcCce--eeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeE
Confidence            6689999999999  8888888777777777777899999999999999999999999999998877 22222  34456


Q ss_pred             eEEEEcCCCCEE-EEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCC-CCcEEEEecCCCcEEEEecCCCcee
Q 042434          397 TSLSVSVDCKNF-IVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGL-DGTFIASGSENSQIYIWNRRNSKPI  474 (517)
Q Consensus       397 ~~~~~s~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~  474 (517)
                      .-+.++|..+.+ .+++.+|.|.+||+.+..........|..+...|   +|+| +..+|++.+.|..|++||....+..
T Consensus       168 Rll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gi---cfspsne~l~vsVG~Dkki~~yD~~s~~s~  244 (673)
T KOG4378|consen  168 RLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGI---CFSPSNEALLVSVGYDKKINIYDIRSQAST  244 (673)
T ss_pred             EEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcc---eecCCccceEEEecccceEEEeeccccccc
Confidence            789999987765 4567889999999988744444455666553333   3344 6678899999999999999988777


Q ss_pred             EEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434          475 EILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS  515 (517)
Q Consensus       475 ~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~  515 (517)
                      ..+. ...+...++|.++| .+|+.|...|.|..||++..+
T Consensus       245 ~~l~-y~~Plstvaf~~~G-~~L~aG~s~G~~i~YD~R~~k  283 (673)
T KOG4378|consen  245 DRLT-YSHPLSTVAFSECG-TYLCAGNSKGELIAYDMRSTK  283 (673)
T ss_pred             ceee-ecCCcceeeecCCc-eEEEeecCCceEEEEecccCC
Confidence            7765 46789999999999 899999999999999998643

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.85  E-value=6.1e-20  Score=159.76  Aligned_cols=201  Identities=17%  Similarity=0.301  Sum_probs=150.6

Q ss_pred             CCCCceEEEEEeCCCCeEEE--eeCCCceeEEEEeCCC-----------------CeeEeeeCcCCCceEEEEEccCCC-
Q 042434          307 DHGFIVSSCAWFPDSKRLVC--GSSDTEKGIFMCDCDG-----------------NEIKAWRGTRIPKVLDLAVTPDGE-  366 (517)
Q Consensus       307 ~~~~~v~~i~~~~~~~~l~~--~~~d~~v~i~~~~~~~-----------------~~~~~~~~~~~~~i~~~~~~~~~~-  366 (517)
                      +|.+.+..+.-++-++-.++  =+..|.  |.+|++..                 .++..+.++. ..-..++|||-.. 
T Consensus       149 ~h~g~~NRvr~~~~~~~~~~aswse~G~--V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk-~EGy~LdWSp~~~g  225 (440)
T KOG0302|consen  149 PHYGGINRVRVSRLGNEVLCASWSENGR--VQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHK-GEGYGLDWSPIKTG  225 (440)
T ss_pred             ccccccceeeecccCCcceeeeecccCc--EEEEEchhhhhhhcCccccccccccCceEEecccC-ccceeeeccccccc
Confidence            45555555555554433333  344555  66666531                 2233333333 5678899999433 


Q ss_pred             EEEEEeCCCcEEEEECCCce-----EEeeccCCCeeEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCccc-eEEeCcccCc
Q 042434          367 NLISVLSDKDIRILNLGTYA-----ERVISEEHPITSLSVSVD-CKNFIVNLNSQEIHMWDVAGKWEKP-FKYTGHSQNK  439 (517)
Q Consensus       367 ~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~i~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~~~  439 (517)
                      .+++|..-+.|++|...++.     ..+..|...|..++|||. ...|++|+.||.|+|||++.+.+.. .....|... 
T Consensus       226 ~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sD-  304 (440)
T KOG0302|consen  226 RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSD-  304 (440)
T ss_pred             ccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCc-
Confidence            57888888999999988765     455678889999999996 4568889999999999998873333 334566655 


Q ss_pred             eEEEeecCCCCCcEEEEecCCCcEEEEecCC---CceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434          440 YVIRSCFGGLDGTFIASGSENSQIYIWNRRN---SKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ  513 (517)
Q Consensus       440 ~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~  513 (517)
                        +..+.|+.+..+||+|+.||+++|||+++   ++++.+++-|..+|++|.|+|.....|+++|.|..|.|||+.-
T Consensus       305 --VNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv  379 (440)
T KOG0302|consen  305 --VNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV  379 (440)
T ss_pred             --eeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence              55566677778999999999999999875   5789999999999999999998878999999999999999864

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.84  E-value=6.4e-19  Score=148.15  Aligned_cols=266  Identities=18%  Similarity=0.251  Sum_probs=197.0

Q ss_pred             CCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCC-eEEEEeCC-------CeEEEEECCCC---------cEEEE
Q 042434          242 SDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDT-KLLTCGNA-------EVLKLWDVETG---------ICKHT  304 (517)
Q Consensus       242 ~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~d-------g~i~iwd~~~~---------~~~~~  304 (517)
                      .|+.|.+.+++.+...-..+.+..|.+.|..++-+|-.. .|+++..+       ..+.||.+...         +++..
T Consensus        38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~  117 (370)
T KOG1007|consen   38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS  117 (370)
T ss_pred             CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence            377888888876655455567788899999999999654 45554332       25789988543         23333


Q ss_pred             eC-CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCe--eEeee----CcCCCceEEEEEcc--CCCEEEEEeCCC
Q 042434          305 FG-DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNE--IKAWR----GTRIPKVLDLAVTP--DGENLISVLSDK  375 (517)
Q Consensus       305 ~~-~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~--~~~~~----~~~~~~i~~~~~~~--~~~~l~~~~~dg  375 (517)
                      +. .+-+.|.|+.|.|++..+++-. |..  |.+|+.....  .....    .......++-+|+|  +|+.+++ ..|+
T Consensus       118 Ldteavg~i~cvew~Pns~klasm~-dn~--i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~  193 (370)
T KOG1007|consen  118 LDTEAVGKINCVEWEPNSDKLASMD-DNN--IVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDS  193 (370)
T ss_pred             CCHHHhCceeeEEEcCCCCeeEEec-cCc--eEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-eCCC
Confidence            33 3456899999999999999877 445  7777765322  22111    11223577788998  5556554 5789


Q ss_pred             cEEEEECCCce---EEeeccCCCeeEEEEcCCCCE-EEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCC
Q 042434          376 DIRILNLGTYA---ERVISEEHPITSLSVSVDCKN-FIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDG  451 (517)
Q Consensus       376 ~i~i~d~~~~~---~~~~~~~~~i~~~~~s~~~~~-l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~  451 (517)
                      ++..||+++..   .....|...+..+.|+|+..+ +++++.||.|++||.+....+++.+.+|..-++.+++-  +...
T Consensus       194 tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn--~~hd  271 (370)
T KOG1007|consen  194 TLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFN--PEHD  271 (370)
T ss_pred             cEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEec--Cccc
Confidence            99999999877   344467778999999998765 66778899999999998888999999999887776653  3356


Q ss_pred             cEEEEecCCCcEEEEecCCC-----------------------------ceeEEecCCCCCeeEEEecCCCCcEEEEeeC
Q 042434          452 TFIASGSENSQIYIWNRRNS-----------------------------KPIEILSGHSMTVNCVSWNPKRPKMLASASD  502 (517)
Q Consensus       452 ~~l~~~~~dg~i~iwd~~~~-----------------------------~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~  502 (517)
                      ++|++|+.|..|.+|...+-                             ..+.++..|...|.+++|+.-.|.++|+-|.
T Consensus       272 qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSY  351 (370)
T KOG1007|consen  272 QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSY  351 (370)
T ss_pred             eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEecc
Confidence            79999999999999965320                             1234666799999999999999999999999


Q ss_pred             CCcEEEeCCCC
Q 042434          503 DHTIRIWGPCQ  513 (517)
Q Consensus       503 dg~v~iw~~~~  513 (517)
                      ||.+.|=++..
T Consensus       352 DGRviIs~V~r  362 (370)
T KOG1007|consen  352 DGRVIISSVPR  362 (370)
T ss_pred             CceEEeecCCh
Confidence            99998876653

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.84  E-value=3e-19  Score=156.41  Aligned_cols=206  Identities=18%  Similarity=0.280  Sum_probs=166.8

Q ss_pred             EeccccCcEEEEEECC-CCCEEEEeeCCCcEEEEEecCCCe----eeEEEEeccCCCCEEEEEECCC-CCeEEEEeCCCe
Q 042434          217 ILTEHKNEVWFVQFSN-NGEYLASSSSDCSAIIWKVLEDSK----LTLKHTLRSHQNPVSFVAWSPD-DTKLLTCGNAEV  290 (517)
Q Consensus       217 ~l~~h~~~v~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~----~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~  290 (517)
                      .+.||+++|..++|+| +...+|+||.|.+|.||.+..+..    ..++..+.+|...|--++|+|. .+.|++++.|.+
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            4679999999999999 677899999999999999865422    2466789999999999999996 478899999999


Q ss_pred             EEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeee-CcCCCceEEEEEccCCCEEE
Q 042434          291 LKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWR-GTRIPKVLDLAVTPDGENLI  369 (517)
Q Consensus       291 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~  369 (517)
                      |.+||+.+|+.+.++. |...|+++.|+.||.++++++.|..  |.+||.+...+.... .+....-....|-.+|..+-
T Consensus       156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKk--vRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~t  232 (472)
T KOG0303|consen  156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKK--VRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFT  232 (472)
T ss_pred             EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccce--eEEEcCCCCcEeeecccccCCCcceeEEeccCceee
Confidence            9999999999988886 9999999999999999999999999  888899865554433 44444566677888888555


Q ss_pred             EEe---CCCcEEEEECCCce----EEeeccCCCeeEEEEcCCCCEEEEEe-CCCeEEEEEcCCC
Q 042434          370 SVL---SDKDIRILNLGTYA----ERVISEEHPITSLSVSVDCKNFIVNL-NSQEIHMWDVAGK  425 (517)
Q Consensus       370 ~~~---~dg~i~i~d~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~  425 (517)
                      +|.   ++..+.+||.....    .........|.---+.++.+.++.++ .|+.|+.|.+...
T Consensus       233 TGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d  296 (472)
T KOG0303|consen  233 TGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE  296 (472)
T ss_pred             eccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence            553   36789999987765    34444556666677888887766554 5999999999765

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.84  E-value=3.5e-18  Score=145.96  Aligned_cols=210  Identities=15%  Similarity=0.215  Sum_probs=172.8

Q ss_pred             EeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEEC
Q 042434          217 ILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDV  296 (517)
Q Consensus       217 ~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~  296 (517)
                      .+.--..+|+|-+|++|+..+|.+.....|.||.......++..+++..|...|+.++|+|..+.|++|+.|..-+||..
T Consensus         5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~   84 (361)
T KOG1523|consen    5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ   84 (361)
T ss_pred             EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence            34445689999999999999999999999999999876668899999999999999999999999999999999999998


Q ss_pred             -CCCc--EEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCe--eEeeeCcCCCceEEEEEccCCCEEEEE
Q 042434          297 -ETGI--CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNE--IKAWRGTRIPKVLDLAVTPDGENLISV  371 (517)
Q Consensus       297 -~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~  371 (517)
                       ..++  +.-.+..+....+++.|+|.++.|++|+....+.|+.+..++.=  .+.+.....+.|.++.|+|++-++++|
T Consensus        85 ~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG  164 (361)
T KOG1523|consen   85 PSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG  164 (361)
T ss_pred             CCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence             4443  33345578889999999999999999999999888877765421  122333444579999999999999999


Q ss_pred             eCCCcEEEEECC-----Cce---------------EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 042434          372 LSDKDIRILNLG-----TYA---------------ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKW  426 (517)
Q Consensus       372 ~~dg~i~i~d~~-----~~~---------------~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~  426 (517)
                      +.|+..++|..-     ...               .......+.+..+.|+|+|..++-.+.|..+.+-|.....
T Consensus       165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence            999999999642     110               0111456679999999999999999999999999987653

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.83  E-value=1.5e-18  Score=146.34  Aligned_cols=240  Identities=21%  Similarity=0.237  Sum_probs=183.3

Q ss_pred             eccccCcEEEEEECC-CCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCC---CCeEEEEeCCCeEEE
Q 042434          218 LTEHKNEVWFVQFSN-NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPD---DTKLLTCGNAEVLKL  293 (517)
Q Consensus       218 l~~h~~~v~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~---~~~l~s~~~dg~i~i  293 (517)
                      -.+|+-.|..+.|-| |...+.+++-|.+++|||.++-   +....|+ .++.|.+-+|+|-   ..++|+|..|-.|++
T Consensus        97 ~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTl---Q~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrL  172 (397)
T KOG4283|consen   97 ENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTL---QEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRL  172 (397)
T ss_pred             CccceeeeeeeEEeeecCceeecccccceEEEeecccc---eeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEE
Confidence            357899999999999 7778899999999999999644   3334443 4678899999983   457788888889999


Q ss_pred             EECCCCcEEEEeCCCCCceEEEEEeCCCCe-EEEeeCCCceeEEEEeCC--CCeeEee-------------eCcCCCceE
Q 042434          294 WDVETGICKHTFGDHGFIVSSCAWFPDSKR-LVCGSSDTEKGIFMCDCD--GNEIKAW-------------RGTRIPKVL  357 (517)
Q Consensus       294 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~-l~~~~~d~~v~i~~~~~~--~~~~~~~-------------~~~~~~~i~  357 (517)
                      -|+.+|.+.+++.+|...|.++.|+|...+ |++|+.||.  +.+||.+  ..+...+             ...+.+.+.
T Consensus       173 CDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~--irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvn  250 (397)
T KOG4283|consen  173 CDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGA--IRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVN  250 (397)
T ss_pred             EeccCCcceeeeccccCceEEEEeccCceeEEEecCCCce--EEEEEeecccceeEEeecccCccCccccccccccceee
Confidence            999999999999999999999999998765 678999999  5566654  2333222             234557899


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEECCCceEEeeccC--------CCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccc
Q 042434          358 DLAVTPDGENLISVLSDKDIRILNLGTYAERVISEE--------HPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKP  429 (517)
Q Consensus       358 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~  429 (517)
                      .++|+.++.++++++.|..+++|+..++........        +.-..+. +-+...++.--.++.+.++++-.+ ..+
T Consensus       251 gla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sg-s~i  328 (397)
T KOG4283|consen  251 GLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEG-SFV  328 (397)
T ss_pred             eeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCc-eEE
Confidence            999999999999999999999999988762221111        1111122 334444555555688999988776 777


Q ss_pred             eEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEec
Q 042434          430 FKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNR  468 (517)
Q Consensus       430 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~  468 (517)
                      ..+..|-.   .+.++++.|+-+...+|..|+.|+.|-.
T Consensus       329 r~l~~h~k---~i~c~~~~~~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  329 RRLSTHLK---RINCAAYRPDFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             Eeeecccc---eeeEEeecCchhhhhccccCCccccccc
Confidence            77777733   3677788899899999999999999976

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.83  E-value=1.4e-18  Score=170.03  Aligned_cols=289  Identities=17%  Similarity=0.189  Sum_probs=202.7

Q ss_pred             cCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECC--CCCeEEEEeCCCeEEEEEC-CC
Q 042434          222 KNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP--DDTKLLTCGNAEVLKLWDV-ET  298 (517)
Q Consensus       222 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~--~~~~l~s~~~dg~i~iwd~-~~  298 (517)
                      ..+...+.|+|-...++++...-.|+|||.+.+..+.-...-......|+.+.+-.  |..++++|+.||.|+||+- .+
T Consensus      1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred             CCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence            33566788899888899988777899999987654332222223346789998865  4578999999999999964 22


Q ss_pred             ----CcEEEEeCC-------CCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCee-EeeeCcCCCceEEEEEcc-CC
Q 042434          299 ----GICKHTFGD-------HGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEI-KAWRGTRIPKVLDLAVTP-DG  365 (517)
Q Consensus       299 ----~~~~~~~~~-------~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~-~~  365 (517)
                          .+.+..+.+       ..+.-.-+.|.....+|++++.-..  |.+||...... ..+.......++++.-+. .|
T Consensus      1144 ~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~--IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~g 1221 (1387)
T KOG1517|consen 1144 KWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRS--IRIWDAHKEQVVADIPYGSSTLVTALSADLVHG 1221 (1387)
T ss_pred             ccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeE--EEEEecccceeEeecccCCCccceeecccccCC
Confidence                223322221       1111234678777677777766555  78888875443 334444444667665543 46


Q ss_pred             CEEEEEeCCCcEEEEECCCce-----EEeeccCCC--eeEEEEcCCCCE-EEEEeCCCeEEEEEcCCC-CccceEEeCcc
Q 042434          366 ENLISVLSDKDIRILNLGTYA-----ERVISEEHP--ITSLSVSVDCKN-FIVNLNSQEIHMWDVAGK-WEKPFKYTGHS  436 (517)
Q Consensus       366 ~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~--i~~~~~s~~~~~-l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~  436 (517)
                      +.+++|..||.|++||.+...     .....|...  |..+.+.+.|-. +++|+.+|.|++||++.. .........|.
T Consensus      1222 n~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~ 1301 (1387)
T KOG1517|consen 1222 NIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHW 1301 (1387)
T ss_pred             ceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeecc
Confidence            899999999999999987644     334445555  899999987655 999999999999999884 22222333333


Q ss_pred             cCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecC-------CCCCeeEEEecCCCCcEEEEeeCCCcEEEe
Q 042434          437 QNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSG-------HSMTVNCVSWNPKRPKMLASASDDHTIRIW  509 (517)
Q Consensus       437 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw  509 (517)
                      .....++++..+++...+|+|+. +.|+||++. |+.+..++.       ..+.+.+++|||.. -++|+|+.|.+|.||
T Consensus      1302 ~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~-~llAaG~~Ds~V~iY 1378 (1387)
T KOG1517|consen 1302 EYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHR-LLLAAGSADSTVSIY 1378 (1387)
T ss_pred             ccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchh-HhhhhccCCceEEEe
Confidence            22223667777899999999998 999999976 555544432       24678999999998 689999999999999


Q ss_pred             CCCCCC
Q 042434          510 GPCQSS  515 (517)
Q Consensus       510 ~~~~~~  515 (517)
                      ....+.
T Consensus      1379 s~~k~~ 1384 (1387)
T KOG1517|consen 1379 SCEKPR 1384 (1387)
T ss_pred             ecCCcC
Confidence            987654

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.83  E-value=1.2e-16  Score=157.22  Aligned_cols=288  Identities=30%  Similarity=0.467  Sum_probs=221.4

Q ss_pred             cccEEEeccccCcEEEEEECCCCCEEEEeeC-CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCC-eEEEEeCCC
Q 042434          212 TETVQILTEHKNEVWFVQFSNNGEYLASSSS-DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDT-KLLTCGNAE  289 (517)
Q Consensus       212 ~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~-dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~dg  289 (517)
                      ......+.+|...|.+++|+|++.++++++. |+.+++|+...+   .....+.+|...|.+++|+|++. .+++++.|+
T Consensus       145 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~  221 (466)
T COG2319         145 GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG---KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDG  221 (466)
T ss_pred             CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC---ceEEeeccCCCceEEEEEcCCcceEEEEecCCC
Confidence            5788889999999999999999999999886 999999999653   45567777999999999999998 555559999


Q ss_pred             eEEEEECCCCcEEE-EeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCe--eEeeeCcCCCceEEEEEccCCC
Q 042434          290 VLKLWDVETGICKH-TFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNE--IKAWRGTRIPKVLDLAVTPDGE  366 (517)
Q Consensus       290 ~i~iwd~~~~~~~~-~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~  366 (517)
                      .+.+||...+.... .+..|.... ...|+|++..+++++.|+.  +.+|+.....  .... ..+...+.++.|+|++.
T Consensus       222 ~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~--~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~  297 (466)
T COG2319         222 TIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGT--IRLWDLRSSSSLLRTL-SGHSSSVLSVAFSPDGK  297 (466)
T ss_pred             cEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCc--EEEeeecCCCcEEEEE-ecCCccEEEEEECCCCC
Confidence            99999998888887 677887765 4489999989999999999  6666665322  3333 34456899999999888


Q ss_pred             EEEEEeCCCcEEEEECCCce--EEee--ccCCCeeEEEEcCCCCEEEEE-eCCCeEEEEEcCCCCccceEEeCcccCceE
Q 042434          367 NLISVLSDKDIRILNLGTYA--ERVI--SEEHPITSLSVSVDCKNFIVN-LNSQEIHMWDVAGKWEKPFKYTGHSQNKYV  441 (517)
Q Consensus       367 ~l~~~~~dg~i~i~d~~~~~--~~~~--~~~~~i~~~~~s~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~  441 (517)
                      .+++++.|+.+.+||..+..  ....  .+...+..+.+.+++..++.+ ..|+.+.+|+..... ..........    
T Consensus       298 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~----  372 (466)
T COG2319         298 LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK-PLKTLEGHSN----  372 (466)
T ss_pred             EEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc-eeEEecCCce----
Confidence            88889999999999988776  2222  455568889884333566666 578889999997763 2222222211    


Q ss_pred             EEeecCCCCCcEEEE-ecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434          442 IRSCFGGLDGTFIAS-GSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ  513 (517)
Q Consensus       442 i~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~  513 (517)
                      +..+.++++ ..+.. +..++.+.+|+............+...+....+.+++ ..+++++.++.+++|+...
T Consensus       373 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  443 (466)
T COG2319         373 VLSVSFSPD-GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDG-KSLASGSSDNTIRLWDLKT  443 (466)
T ss_pred             EEEEEECCC-CCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCC-cEEEEecCCCcEEEEeccC
Confidence            223333443 34444 7889999999999888877776554789999999998 6888899999999999865

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.83  E-value=1.3e-18  Score=153.03  Aligned_cols=258  Identities=22%  Similarity=0.291  Sum_probs=180.8

Q ss_pred             ccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEec--------C-----CCeeeEEEEeccCCCCEEEEEECCCC
Q 042434          213 ETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVL--------E-----DSKLTLKHTLRSHQNPVSFVAWSPDD  279 (517)
Q Consensus       213 ~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~--------~-----~~~~~~~~~~~~h~~~v~~l~~s~~~  279 (517)
                      +....|..|..+|+++.|+|+|..||+|+.+|.|.+|...        +     .+.+...+.+.+|...|..++|+|++
T Consensus        56 ~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~  135 (434)
T KOG1009|consen   56 EYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS  135 (434)
T ss_pred             EEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC
Confidence            3466788999999999999999999999999999999875        2     23366777889999999999999999


Q ss_pred             CeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC--Ce-------------
Q 042434          280 TKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG--NE-------------  344 (517)
Q Consensus       280 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~--~~-------------  344 (517)
                      .++++++.|..+++||+..|.....+..|...+..++|.|-++++++-+.|....++......  ..             
T Consensus       136 ~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~  215 (434)
T KOG1009|consen  136 NFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNE  215 (434)
T ss_pred             ceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCC
Confidence            999999999999999999999999999999999999999999999998888753333222211  11             


Q ss_pred             -----eEeeeCcC-CCceEEEEEccCCCEEEEEeC----CC-----cEEEEECCCce---EEeeccCCCeeEEEEcCC--
Q 042434          345 -----IKAWRGTR-IPKVLDLAVTPDGENLISVLS----DK-----DIRILNLGTYA---ERVISEEHPITSLSVSVD--  404 (517)
Q Consensus       345 -----~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~----dg-----~i~i~d~~~~~---~~~~~~~~~i~~~~~s~~--  404 (517)
                           .+.+.... ......++|+|+|..+++.+.    ++     ..++|+-....   ........+...+.++|-  
T Consensus       216 ~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~  295 (434)
T KOG1009|consen  216 REGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYY  295 (434)
T ss_pred             CCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEE
Confidence                 11111000 113456789999999887643    22     23455433222   222233334444444441  


Q ss_pred             ---------------CCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecC
Q 042434          405 ---------------CKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRR  469 (517)
Q Consensus       405 ---------------~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~  469 (517)
                                     .+.+++....+.+++||.+........-.-|-   ..++-++|++||.+++..|.||...+.-++
T Consensus       296 elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~nihy---~~iTDiaws~dg~~l~vSS~DGyCS~vtfe  372 (434)
T KOG1009|consen  296 ELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHY---SAITDIAWSDDGSVLLVSSTDGFCSLVTFE  372 (434)
T ss_pred             EeccccccccccccccceEEEEeecceEEEeccccccceEEEeeeee---eeecceeecCCCcEEEEeccCCceEEEEEc
Confidence                           12233334456799999876422212222222   236777889999999999999988777766


Q ss_pred             CCce
Q 042434          470 NSKP  473 (517)
Q Consensus       470 ~~~~  473 (517)
                      ..++
T Consensus       373 ~~el  376 (434)
T KOG1009|consen  373 PWEL  376 (434)
T ss_pred             chhc
Confidence            5543

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.82  E-value=8e-18  Score=167.24  Aligned_cols=299  Identities=14%  Similarity=0.128  Sum_probs=206.9

Q ss_pred             cCCCcccEEEeccccCcEEEEEECCC-CCEEEEeeCCCcEEEEEecCC----CeeeEEEEeccCCCCEEEEEECCCCCeE
Q 042434          208 DQIPTETVQILTEHKNEVWFVQFSNN-GEYLASSSSDCSAIIWKVLED----SKLTLKHTLRSHQNPVSFVAWSPDDTKL  282 (517)
Q Consensus       208 ~~~~~~~~~~l~~h~~~v~~~~~s~~-~~~l~t~~~dg~i~iw~~~~~----~~~~~~~~~~~h~~~v~~l~~s~~~~~l  282 (517)
                      |...+..+..+..|...|..++.++. +.+++|||.||+|++|+...-    .......++....+.+.++...+.++.+
T Consensus      1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred             CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeE
Confidence            56677889999999999999998874 599999999999999998531    2334444555567889999999999999


Q ss_pred             EEEeCCCeEEEEECCCC--c-----EEEEeCCC-CCceE-EEEEeCC-CC-eEEEeeCCCceeEEEEeCCCCee--Eeee
Q 042434          283 LTCGNAEVLKLWDVETG--I-----CKHTFGDH-GFIVS-SCAWFPD-SK-RLVCGSSDTEKGIFMCDCDGNEI--KAWR  349 (517)
Q Consensus       283 ~s~~~dg~i~iwd~~~~--~-----~~~~~~~~-~~~v~-~i~~~~~-~~-~l~~~~~d~~v~i~~~~~~~~~~--~~~~  349 (517)
                      |+++.||.|.+.+++..  .     +.+....+ .+.+. .-+|... +. .++.+...+.  +..||.+....  ....
T Consensus      1114 Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~--iv~~D~r~~~~~w~lk~ 1191 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSR--IVSWDTRMRHDAWRLKN 1191 (1431)
T ss_pred             EEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccc--eEEecchhhhhHHhhhc
Confidence            99999999999998752  1     12222222 23333 3344332 33 5677777776  88888875322  1112


Q ss_pred             CcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce---EEeeccCCCeeEEEEcCCC---CEEEEEe--CCCeEEEEE
Q 042434          350 GTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA---ERVISEEHPITSLSVSVDC---KNFIVNL--NSQEIHMWD  421 (517)
Q Consensus       350 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~s~~~---~~l~~~~--~d~~i~~~d  421 (517)
                      ....+.|++++.+|.+.++++|+..|.+.+||++-+.   ........++..+..+|-.   ...++++  ..+.|.+|+
T Consensus      1192 ~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn 1271 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWN 1271 (1431)
T ss_pred             CccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeee
Confidence            2233589999999999999999999999999998776   3344555678888877733   3444443  467899999


Q ss_pred             cCCCCccceEEeCc-----------------ccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCcee----------
Q 042434          422 VAGKWEKPFKYTGH-----------------SQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPI----------  474 (517)
Q Consensus       422 ~~~~~~~~~~~~~~-----------------~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~----------  474 (517)
                      +.++ .....+...                 ......+.+.. ...+.++.+|+.|..|+.||.......          
T Consensus      1272 ~~~g-~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~-~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~ 1349 (1431)
T KOG1240|consen 1272 METG-LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGV-CEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTS 1349 (1431)
T ss_pred             cccC-cceEEEEcCCCCcchhhhcccccCCCCCcccceeeec-ccCCceeeecCCccceeeccCCCcccccccccCcccc
Confidence            9876 333322221                 11111222222 344568899999999999997532111          


Q ss_pred             --------------------------------------EEe--------cCCCCCeeEEEecCCCCcEEEEeeCCCcEEE
Q 042434          475 --------------------------------------EIL--------SGHSMTVNCVSWNPKRPKMLASASDDHTIRI  508 (517)
Q Consensus       475 --------------------------------------~~~--------~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~i  508 (517)
                                                            ..+        ..|..+|+++++......++++++.||.|+|
T Consensus      1350 ~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~Iki 1429 (1431)
T KOG1240|consen 1350 YSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKI 1429 (1431)
T ss_pred             ccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeee
Confidence                                                  000        1377789999887665569999999999999


Q ss_pred             eC
Q 042434          509 WG  510 (517)
Q Consensus       509 w~  510 (517)
                      |.
T Consensus      1430 Wk 1431 (1431)
T KOG1240|consen 1430 WK 1431 (1431)
T ss_pred             cC
Confidence            95

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.82  E-value=3.2e-18  Score=166.31  Aligned_cols=236  Identities=16%  Similarity=0.179  Sum_probs=170.0

Q ss_pred             CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCC---CeEEEEECCCCcEEEEeCCCCCceEEEEEeC
Q 042434          243 DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNA---EVLKLWDVETGICKHTFGDHGFIVSSCAWFP  319 (517)
Q Consensus       243 dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~  319 (517)
                      +..|.+||.....    ...+..|...+.+.+|+|||+.|+.++.+   ..|.+||+.+++.... .........++|+|
T Consensus       183 ~~~i~i~d~dg~~----~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSP  257 (429)
T PRK01742        183 PYEVRVADYDGFN----QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSP  257 (429)
T ss_pred             eEEEEEECCCCCC----ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECC
Confidence            4689999986432    24456788889999999999999987654   3799999988864322 12222344689999


Q ss_pred             CCCeEEEee-CCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEe-CCCcEEEEECCC--ceEEeeccCCC
Q 042434          320 DSKRLVCGS-SDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVL-SDKDIRILNLGT--YAERVISEEHP  395 (517)
Q Consensus       320 ~~~~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~--~~~~~~~~~~~  395 (517)
                      ||+.|++++ .+|...||.++..+.....+..+. ..+....|+|||+.++.++ .+|...+|++..  .......+.. 
T Consensus       258 DG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~-~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~-  335 (429)
T PRK01742        258 DGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGA-GNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG-  335 (429)
T ss_pred             CCCEEEEEEecCCcEEEEEEECCCCCeEeeccCC-CCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC-
Confidence            999888765 688888999998876666655433 3577899999999877655 567778887643  3332223322 


Q ss_pred             eeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEec--CCCce
Q 042434          396 ITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNR--RNSKP  473 (517)
Q Consensus       396 i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~--~~~~~  473 (517)
                       ....|+|+|+++++.+.++ +..||+.++... .......     .....|+|||++|+.++.+|.+.+|++  .+|+.
T Consensus       336 -~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~-~lt~~~~-----~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~  407 (429)
T PRK01742        336 -YSAQISADGKTLVMINGDN-VVKQDLTSGSTE-VLSSTFL-----DESPSISPNGIMIIYSSTQGLGKVLQLVSADGRF  407 (429)
T ss_pred             -CCccCCCCCCEEEEEcCCC-EEEEECCCCCeE-EecCCCC-----CCCceECCCCCEEEEEEcCCCceEEEEEECCCCc
Confidence             4578999999998887755 566998775222 1111111     123446999999999999998888875  46888


Q ss_pred             eEEecCCCCCeeEEEecCCC
Q 042434          474 IEILSGHSMTVNCVSWNPKR  493 (517)
Q Consensus       474 ~~~~~~h~~~v~~v~~~~~~  493 (517)
                      ...+.+|.+.+..++|+|--
T Consensus       408 ~~~l~~~~g~~~~p~wsp~~  427 (429)
T PRK01742        408 KARLPGSDGQVKFPAWSPYL  427 (429)
T ss_pred             eEEccCCCCCCCCcccCCCC
Confidence            89998899999999999853

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=8.6e-20  Score=180.48  Aligned_cols=246  Identities=17%  Similarity=0.206  Sum_probs=186.7

Q ss_pred             cCcEEEEEECCCCCE----EEEeeCCCcEEEEEecC---CCeeeEEEEeccCCCCEEEEEECCCC-CeEEEEeCCCeEEE
Q 042434          222 KNEVWFVQFSNNGEY----LASSSSDCSAIIWKVLE---DSKLTLKHTLRSHQNPVSFVAWSPDD-TKLLTCGNAEVLKL  293 (517)
Q Consensus       222 ~~~v~~~~~s~~~~~----l~t~~~dg~i~iw~~~~---~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~i  293 (517)
                      ...-+.++|.+.|..    ||.|..||.|.+||...   +.....+.+...|++.|..+.|++.. ++||+|+.||.|.|
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i  143 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI  143 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence            456678999987765    88899999999999865   45556677888999999999999976 59999999999999


Q ss_pred             EECCCCcEEEEeC--CCCCceEEEEEeCC-CCeEEEeeCCCceeEEEEeCCCCe-eEeeeCcC-CCceEEEEEccCCC-E
Q 042434          294 WDVETGICKHTFG--DHGFIVSSCAWFPD-SKRLVCGSSDTEKGIFMCDCDGNE-IKAWRGTR-IPKVLDLAVTPDGE-N  367 (517)
Q Consensus       294 wd~~~~~~~~~~~--~~~~~v~~i~~~~~-~~~l~~~~~d~~v~i~~~~~~~~~-~~~~~~~~-~~~i~~~~~~~~~~-~  367 (517)
                      ||+.+-+.-....  .....|.+++|+.. ...|++++.+|.  +.+||++.+. +..+..+. ...+..+.|+|++. .
T Consensus       144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~--~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTq  221 (1049)
T KOG0307|consen  144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGR--AVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQ  221 (1049)
T ss_pred             eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCC--ceeccccCCCcccccccCCCccceeeeeeCCCCcee
Confidence            9998755443332  24678999999975 556788888888  7888887653 33333222 23578899999875 5


Q ss_pred             EEEEeCCC---cEEEEECCCce---EEeeccCCCeeEEEEcCCC-CEEEEEeCCCeEEEEEcCCCCccceEEeCcccCce
Q 042434          368 LISVLSDK---DIRILNLGTYA---ERVISEEHPITSLSVSVDC-KNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKY  440 (517)
Q Consensus       368 l~~~~~dg---~i~i~d~~~~~---~~~~~~~~~i~~~~~s~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~  440 (517)
                      +++++.|.   .|.+||++...   .....|...|.++.|++.+ .++++++.|+.|.+|+..++ +.+..+.......+
T Consensus       222 l~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg-Evl~~~p~~~nW~f  300 (1049)
T KOG0307|consen  222 LLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG-EVLGELPAQGNWCF  300 (1049)
T ss_pred             eeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc-eEeeecCCCCccee
Confidence            66666544   69999988755   4445788899999999966 88899999999999999886 56666655333333


Q ss_pred             EEEeecCCCCCcEEEEecCCCcEEEEecCCCc
Q 042434          441 VIRSCFGGLDGTFIASGSENSQIYIWNRRNSK  472 (517)
Q Consensus       441 ~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  472 (517)
                      .+  -|...+-..+++++.||.|-||.+..+.
T Consensus       301 dv--~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  301 DV--QWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             ee--eecCCCcchhhhheeccceeeeeeecCC
Confidence            33  3323455589999999999999987654

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.81  E-value=6e-18  Score=144.60  Aligned_cols=237  Identities=22%  Similarity=0.375  Sum_probs=175.4

Q ss_pred             CEEEEEECCCCCeEEEEeCCCeEEEEECCCC-------c-----EEEEeC-CCCCceEEEEEe-------CCCCeEEEee
Q 042434          269 PVSFVAWSPDDTKLLTCGNAEVLKLWDVETG-------I-----CKHTFG-DHGFIVSSCAWF-------PDSKRLVCGS  328 (517)
Q Consensus       269 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~-------~-----~~~~~~-~~~~~v~~i~~~-------~~~~~l~~~~  328 (517)
                      -...+.|+|||..|++-+.|..+.+|++...       .     ....++ .....|...+|-       |+..++++.+
T Consensus        51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss  130 (406)
T KOG2919|consen   51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS  130 (406)
T ss_pred             hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence            3456899999999999999999999998421       0     011111 235667777886       5678999999


Q ss_pred             CCCceeEEEEeCCCCeeEeeeC-----cCCCceEEEEEccCCCEEEEEeCCCcEEEEEC-CCce----EEe-----eccC
Q 042434          329 SDTEKGIFMCDCDGNEIKAWRG-----TRIPKVLDLAVTPDGENLISVLSDKDIRILNL-GTYA----ERV-----ISEE  393 (517)
Q Consensus       329 ~d~~v~i~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~-~~~~----~~~-----~~~~  393 (517)
                      .+.-  |.+||.-+..++.-..     .......+++|+|||..|++| ....|++||+ +.+.    ...     ....
T Consensus       131 r~~P--Ih~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~  207 (406)
T KOG2919|consen  131 RDQP--IHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQK  207 (406)
T ss_pred             ccCc--eeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhccccccc
Confidence            9998  7778876554433211     111246789999999999876 5678999999 4443    111     2235


Q ss_pred             CCeeEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecC-CCcEEEEecCCC
Q 042434          394 HPITSLSVSVD-CKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSE-NSQIYIWNRRNS  471 (517)
Q Consensus       394 ~~i~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~  471 (517)
                      +-+.+++|+|- .+.+++++....+-||.-.+. .+...+.+|..+   |+.+.|.++|+.|++|.. |-.|..||++..
T Consensus       208 giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~-~pl~llggh~gG---vThL~~~edGn~lfsGaRk~dkIl~WDiR~~  283 (406)
T KOG2919|consen  208 GIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR-RPLQLLGGHGGG---VTHLQWCEDGNKLFSGARKDDKILCWDIRYS  283 (406)
T ss_pred             ceeeeeeccCCCCcceeeecccceeeeEecCCC-CceeeecccCCC---eeeEEeccCcCeecccccCCCeEEEEeehhc
Confidence            56899999995 558899998888888887666 777778888887   555666899999999986 568999999864


Q ss_pred             -ceeEEecCCCC-CeeEE--EecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434          472 -KPIEILSGHSM-TVNCV--SWNPKRPKMLASASDDHTIRIWGPCQ  513 (517)
Q Consensus       472 -~~~~~~~~h~~-~v~~v--~~~~~~~~~l~s~~~dg~v~iw~~~~  513 (517)
                       .++..+..|.+ .-..|  ...|++ .+|++|+.||.|++||++.
T Consensus       284 ~~pv~~L~rhv~~TNQRI~FDld~~~-~~LasG~tdG~V~vwdlk~  328 (406)
T KOG2919|consen  284 RDPVYALERHVGDTNQRILFDLDPKG-EILASGDTDGSVRVWDLKD  328 (406)
T ss_pred             cchhhhhhhhccCccceEEEecCCCC-ceeeccCCCccEEEEecCC
Confidence             57777777765 33334  446888 7999999999999999987

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.81  E-value=2.6e-18  Score=152.87  Aligned_cols=238  Identities=16%  Similarity=0.197  Sum_probs=165.6

Q ss_pred             EEEECCCCCeEEEEeCCC-----eEEEEECCCCcEEEEeCCC----CCceEEEEEeC-------CCCeEEEeeCCCceeE
Q 042434          272 FVAWSPDDTKLLTCGNAE-----VLKLWDVETGICKHTFGDH----GFIVSSCAWFP-------DSKRLVCGSSDTEKGI  335 (517)
Q Consensus       272 ~l~~s~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~----~~~v~~i~~~~-------~~~~l~~~~~d~~v~i  335 (517)
                      .+..-|+.++|+++-.+.     .|+||+-.... .  +-.|    .....|+.|..       .|+++|.|+.|..|.|
T Consensus       130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~n-l--YvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeI  206 (463)
T KOG0270|consen  130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEEEEN-L--YVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEI  206 (463)
T ss_pred             cceeccCCcEEEEeeccCCceEEEEEEEcCCCcc-e--eEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEE
Confidence            344557667777664432     34555533211 1  1122    33445666643       3679999999999555


Q ss_pred             EEEeCCCCeeEeee-------------------CcCCCceEEEEEccCC-CEEEEEeCCCcEEEEECCCce--EEeeccC
Q 042434          336 FMCDCDGNEIKAWR-------------------GTRIPKVLDLAVTPDG-ENLISVLSDKDIRILNLGTYA--ERVISEE  393 (517)
Q Consensus       336 ~~~~~~~~~~~~~~-------------------~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~--~~~~~~~  393 (517)
                      |..|+.......+.                   .+|...|..+.|+..- +.|++|+.|.+|.+||+.+++  .....+.
T Consensus       207 WDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~  286 (463)
T KOG0270|consen  207 WDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHG  286 (463)
T ss_pred             eccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcC
Confidence            55554432221111                   1344456677777654 478899999999999999988  4444588


Q ss_pred             CCeeEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCC-
Q 042434          394 HPITSLSVSVD-CKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS-  471 (517)
Q Consensus       394 ~~i~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-  471 (517)
                      ..|.++.|+|. +.++++|+.|+++.+.|.+........+.. ...+..+.+-.  .....+++++.||+|+-+|+++. 
T Consensus       287 k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~-~g~VEkv~w~~--~se~~f~~~tddG~v~~~D~R~~~  363 (463)
T KOG0270|consen  287 KKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKF-DGEVEKVAWDP--HSENSFFVSTDDGTVYYFDIRNPG  363 (463)
T ss_pred             CceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEe-ccceEEEEecC--CCceeEEEecCCceEEeeecCCCC
Confidence            89999999995 678999999999999999854233333322 22222233322  23457888899999999999875 


Q ss_pred             ceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434          472 KPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS  515 (517)
Q Consensus       472 ~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~  515 (517)
                      +++.+++.|.++|.++++++.-+.+++|+|.|+.|++|++....
T Consensus       364 ~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~  407 (463)
T KOG0270|consen  364 KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS  407 (463)
T ss_pred             CceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCC
Confidence            89999999999999999999988999999999999999987543

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=6.9e-17  Score=155.92  Aligned_cols=322  Identities=16%  Similarity=0.209  Sum_probs=230.0

Q ss_pred             CCCCCc-cccccCCCcccccCCCcccEEEeccccCcEEEEEECCCC---CEEEEeeCCCcEEEEEecCCCee--------
Q 042434          190 YHNSSV-AISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNG---EYLASSSSDCSAIIWKVLEDSKL--------  257 (517)
Q Consensus       190 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~---~~l~t~~~dg~i~iw~~~~~~~~--------  257 (517)
                      |.++.. .+.-+.+...++...++.++..+.+|..+++.+.+.|..   .++++++.||.|++||...+.-+        
T Consensus        24 fSnD~k~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~  103 (792)
T KOG1963|consen   24 FSNDAKFLFLCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLP  103 (792)
T ss_pred             cccCCcEEEEeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCc
Confidence            334443 444445556667777889999999999999999998854   47889999999999986433110        


Q ss_pred             -----------------------------------------------------------------------e--------
Q 042434          258 -----------------------------------------------------------------------T--------  258 (517)
Q Consensus       258 -----------------------------------------------------------------------~--------  258 (517)
                                                                                             .        
T Consensus       104 v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~  183 (792)
T KOG1963|consen  104 VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKI  183 (792)
T ss_pred             eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeE
Confidence                                                                                   0        


Q ss_pred             -----EE--EE------eccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCC--C--cEEEEeCCCCCceEEEEEeCCC
Q 042434          259 -----LK--HT------LRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVET--G--ICKHTFGDHGFIVSSCAWFPDS  321 (517)
Q Consensus       259 -----~~--~~------~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~--~--~~~~~~~~~~~~v~~i~~~~~~  321 (517)
                           ..  +.      -..|.-.+++.++||+++++|+|..||.|.+|.--.  +  .....+.-|...|.+++|+++|
T Consensus       184 ~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G  263 (792)
T KOG1963|consen  184 HIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDG  263 (792)
T ss_pred             EEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCC
Confidence                 00  00      012455689999999999999999999999996422  1  2334566788999999999999


Q ss_pred             CeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEee----------
Q 042434          322 KRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVI----------  390 (517)
Q Consensus       322 ~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~----------  390 (517)
                      .+|++|+..|.  +..|...++. +.+...-.++|..+.++||+.+.+....|+.|.+....+.. ...+          
T Consensus       264 ~~LlSGG~E~V--Lv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~  340 (792)
T KOG1963|consen  264 AYLLSGGREGV--LVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPST  340 (792)
T ss_pred             ceEeecccceE--EEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccc
Confidence            99999999998  8888887766 55555555789999999999999999999999999876544 1111          


Q ss_pred             --ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeC-----cc---cCceEEEeecCCCCCcEEEEec--
Q 042434          391 --SEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTG-----HS---QNKYVIRSCFGGLDGTFIASGS--  458 (517)
Q Consensus       391 --~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-----~~---~~~~~i~~~~~s~~~~~l~~~~--  458 (517)
                        ....-.+.++++|..+.++..+..|.|.+||+.+. ..+..+..     +.   .....++.++.+..|.+++|+-  
T Consensus       341 k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td-~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~  419 (792)
T KOG1963|consen  341 KTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTD-STIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEAR  419 (792)
T ss_pred             cccccccceeEEEcCCCCceeecCCCceEEEEecccc-ceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeee
Confidence              11334677899998888999999999999999765 22233221     11   1122345555577799999864  


Q ss_pred             ------CCC--cEEEEecCCCc----eeEEe-cCCCCCeeEEEecC-CCCcEEEEeeCCCcEEEeCCCCCC
Q 042434          459 ------ENS--QIYIWNRRNSK----PIEIL-SGHSMTVNCVSWNP-KRPKMLASASDDHTIRIWGPCQSS  515 (517)
Q Consensus       459 ------~dg--~i~iwd~~~~~----~~~~~-~~h~~~v~~v~~~~-~~~~~l~s~~~dg~v~iw~~~~~~  515 (517)
                            .||  .+++|-.....    +...+ ..|...+...++.+ .....++|+|.||.++||-+...+
T Consensus       420 ~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~  490 (792)
T KOG1963|consen  420 IDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDS  490 (792)
T ss_pred             ehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEeccc
Confidence                  233  57889755433    22222 35877766666654 332389999999999999885443

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.80  E-value=3e-17  Score=139.49  Aligned_cols=218  Identities=17%  Similarity=0.302  Sum_probs=144.9

Q ss_pred             ccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCC----cEEEEeCCCCCceEEEEEeC--CCCeEEEeeCCCceeEEE
Q 042434          264 RSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETG----ICKHTFGDHGFIVSSCAWFP--DSKRLVCGSSDTEKGIFM  337 (517)
Q Consensus       264 ~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~~d~~v~i~~  337 (517)
                      .+|.+-|+++.|.+.|+.+|+|+.|++++|||....    .+....+.|.+.|..+.|.+  -|+.+++++.|++  +.+
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drt--v~i   87 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRT--VSI   87 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCc--eee
Confidence            568899999999999999999999999999996443    45667789999999999976  3899999999999  445


Q ss_pred             EeCC--CC-----e--eEeeeCcCCCceEEEEEccC--CCEEEEEeCCCcEEEEECCCceEEeeccCCCeeEEEEcCCCC
Q 042434          338 CDCD--GN-----E--IKAWRGTRIPKVLDLAVTPD--GENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCK  406 (517)
Q Consensus       338 ~~~~--~~-----~--~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~  406 (517)
                      |...  ..     .  .........+.|+++.|.|.  |-.+++++.||.++||+.-...                    
T Consensus        88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~--------------------  147 (361)
T KOG2445|consen   88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPM--------------------  147 (361)
T ss_pred             eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcc--------------------
Confidence            5432  10     0  11111223346777777774  4467777777777777654321                    


Q ss_pred             EEEEEeCCCeEEEEEcCCCCcc-ceEEeCcccCceEEEeecCCCCCcEEEEecCC-----CcEEEEecCCC----ceeEE
Q 042434          407 NFIVNLNSQEIHMWDVAGKWEK-PFKYTGHSQNKYVIRSCFGGLDGTFIASGSEN-----SQIYIWNRRNS----KPIEI  476 (517)
Q Consensus       407 ~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~----~~~~~  476 (517)
                               .+.-|.+...... +.....+.....++..+..-....+||.|+.+     +.++||....+    ..+.+
T Consensus       148 ---------nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~  218 (361)
T KOG2445|consen  148 ---------NLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAE  218 (361)
T ss_pred             ---------ccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehh
Confidence                     1111222111000 00011122222333333222245678888766     57888875443    35677


Q ss_pred             ecCCCCCeeEEEecCCC---CcEEEEeeCCCcEEEeCCCC
Q 042434          477 LSGHSMTVNCVSWNPKR---PKMLASASDDHTIRIWGPCQ  513 (517)
Q Consensus       477 ~~~h~~~v~~v~~~~~~---~~~l~s~~~dg~v~iw~~~~  513 (517)
                      +.+|..+|++++|.|+-   -.+||+++.|| |+||++..
T Consensus       219 L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~  257 (361)
T KOG2445|consen  219 LPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKV  257 (361)
T ss_pred             cCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEee
Confidence            88999999999999963   25899999999 99999874

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.80  E-value=1.7e-17  Score=139.79  Aligned_cols=242  Identities=19%  Similarity=0.293  Sum_probs=179.5

Q ss_pred             CCEEEEEECC--C-CCeEEEEeC----CCeEEEEEC--CCCcEEEEe-CCCCCceEEEEEeCCCC-----eEEEeeCCCc
Q 042434          268 NPVSFVAWSP--D-DTKLLTCGN----AEVLKLWDV--ETGICKHTF-GDHGFIVSSCAWFPDSK-----RLVCGSSDTE  332 (517)
Q Consensus       268 ~~v~~l~~s~--~-~~~l~s~~~----dg~i~iwd~--~~~~~~~~~-~~~~~~v~~i~~~~~~~-----~l~~~~~d~~  332 (517)
                      -++.++.|+.  + +.+|+.|+.    ...|.|..+  ++++.+..- -.|..+++.+.|.|+..     +|++++.  .
T Consensus        45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D--~  122 (364)
T KOG0290|consen   45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSD--F  122 (364)
T ss_pred             CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcccC--e
Confidence            4577888873  2 356777764    345555543  445444322 27889999999999863     4554443  3


Q ss_pred             eeEEEEeCC--CCeeEe-------eeCcCCCceEEEEEcc-CCCEEEEEeCCCcEEEEECCCc-----eEEeeccCCCee
Q 042434          333 KGIFMCDCD--GNEIKA-------WRGTRIPKVLDLAVTP-DGENLISVLSDKDIRILNLGTY-----AERVISEEHPIT  397 (517)
Q Consensus       333 v~i~~~~~~--~~~~~~-------~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~i~  397 (517)
                        +.+|...  ...+..       .......+++++.|+. +-+++.+.+-|-+..|||+.++     +...+.|...|.
T Consensus       123 --LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~  200 (364)
T KOG0290|consen  123 --LRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVY  200 (364)
T ss_pred             --EEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCccee
Confidence              5555544  222211       1223345788999987 5568889999999999999986     367889999999


Q ss_pred             EEEEcCCC-CEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCC-cEEEEecCCC-cee
Q 042434          398 SLSVSVDC-KNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENS-QIYIWNRRNS-KPI  474 (517)
Q Consensus       398 ~~~~s~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~-~~~  474 (517)
                      .++|...+ +.|++.+.||.+++||++........+.........++..+...|-+++|+-..|+ .|.|.|++.. .++
T Consensus       201 DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpv  280 (364)
T KOG0290|consen  201 DIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPV  280 (364)
T ss_pred             EEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcce
Confidence            99999865 46888899999999999987555555655554455566666566778898877664 7999999864 689


Q ss_pred             EEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434          475 EILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ  513 (517)
Q Consensus       475 ~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~  513 (517)
                      ..+.+|.+.|++++|.|..+..++|||+|..+.|||+.+
T Consensus       281 a~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q  319 (364)
T KOG0290|consen  281 ARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ  319 (364)
T ss_pred             ehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence            999999999999999999989999999999999999975

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.79  E-value=3e-16  Score=148.09  Aligned_cols=250  Identities=10%  Similarity=0.132  Sum_probs=163.9

Q ss_pred             cEEEeccccCcEEEEEECCCCCEEEEee-CCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeC-CCeE
Q 042434          214 TVQILTEHKNEVWFVQFSNNGEYLASSS-SDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGN-AEVL  291 (517)
Q Consensus       214 ~~~~l~~h~~~v~~~~~s~~~~~l~t~~-~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-dg~i  291 (517)
                      .+..+. +.+....++++|++++|++++ .++.|.+|++.....+....... ..+....++|+|+++++++++. ++.|
T Consensus        27 ~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v  104 (330)
T PRK11028         27 LLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCV  104 (330)
T ss_pred             eeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeE
Confidence            444444 446677899999999887664 57889999997433444333332 3345678999999999988765 7899


Q ss_pred             EEEECCC-C---cEEEEeCCCCCceEEEEEeCCCCeEEEeeC-CCceeEEEEeCCC-CeeE-----eeeCcCCCceEEEE
Q 042434          292 KLWDVET-G---ICKHTFGDHGFIVSSCAWFPDSKRLVCGSS-DTEKGIFMCDCDG-NEIK-----AWRGTRIPKVLDLA  360 (517)
Q Consensus       292 ~iwd~~~-~---~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-d~~v~i~~~~~~~-~~~~-----~~~~~~~~~i~~~~  360 (517)
                      .+|++.+ +   +.+..+ .+.....+++++|+++++++++. ++.  |++|+... ..+.     ............+.
T Consensus       105 ~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~--v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~  181 (330)
T PRK11028        105 SVSPLDKDGIPVAPIQII-EGLEGCHSANIDPDNRTLWVPCLKEDR--IRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMV  181 (330)
T ss_pred             EEEEECCCCCCCCceeec-cCCCcccEeEeCCCCCEEEEeeCCCCE--EEEEEECCCCcccccCCCceecCCCCCCceEE
Confidence            9999964 3   223333 22344677889999998876554 577  55565543 2221     11111223467899


Q ss_pred             EccCCCEEEEEeC-CCcEEEEECCC--ceE----Eeec------cCCCeeEEEEcCCCCEEEEEeC-CCeEEEEEcCCCC
Q 042434          361 VTPDGENLISVLS-DKDIRILNLGT--YAE----RVIS------EEHPITSLSVSVDCKNFIVNLN-SQEIHMWDVAGKW  426 (517)
Q Consensus       361 ~~~~~~~l~~~~~-dg~i~i~d~~~--~~~----~~~~------~~~~i~~~~~s~~~~~l~~~~~-d~~i~~~d~~~~~  426 (517)
                      |+|+|++++++.. ++.|.+||+..  +..    ....      .......+.++|++++++++.. ++.|.+|++....
T Consensus       182 ~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~  261 (330)
T PRK11028        182 FHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDG  261 (330)
T ss_pred             ECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCC
Confidence            9999999988876 89999999973  221    1111      1112335889999999998865 7899999996442


Q ss_pred             ccceEEeCcccCceEEEeecCCCCCcEEEEecC-CCcEEEEecC
Q 042434          427 EKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSE-NSQIYIWNRR  469 (517)
Q Consensus       427 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~iwd~~  469 (517)
                      . ...+.++.......+.+.++|+|++|++++. +++|.+|++.
T Consensus       262 ~-~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        262 S-VLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             C-eEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            1 1222222211112234456899999998775 8899999874

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.79  E-value=3.3e-17  Score=157.81  Aligned_cols=252  Identities=17%  Similarity=0.225  Sum_probs=179.8

Q ss_pred             ccEEEeccccCcEEEEEECC-CCCEEEEeeCCCcEEEEEecCCCe--e-eEEEEeccCCCCEEEEEECCCC--CeEEEEe
Q 042434          213 ETVQILTEHKNEVWFVQFSN-NGEYLASSSSDCSAIIWKVLEDSK--L-TLKHTLRSHQNPVSFVAWSPDD--TKLLTCG  286 (517)
Q Consensus       213 ~~~~~l~~h~~~v~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~--~-~~~~~~~~h~~~v~~l~~s~~~--~~l~s~~  286 (517)
                      .+...+ .-...|+|+.|+| +..++|.|+.+|.|.+||+..+..  . ........|..+|+.+.|..+.  .-+++++
T Consensus       234 ~Pe~~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~s  312 (555)
T KOG1587|consen  234 TPELVL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLS  312 (555)
T ss_pred             CceEEE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEe
Confidence            344344 3678999999999 778899999999999999976543  1 1122335689999999997654  4499999


Q ss_pred             CCCeEEEEECCCCcEE------EEeC------CCCCceEEEEEeC-CCCeEEEeeCCCceeEEEEeCCCCee--------
Q 042434          287 NAEVLKLWDVETGICK------HTFG------DHGFIVSSCAWFP-DSKRLVCGSSDTEKGIFMCDCDGNEI--------  345 (517)
Q Consensus       287 ~dg~i~iwd~~~~~~~------~~~~------~~~~~v~~i~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~--------  345 (517)
                      .||.|..|+++.-...      ....      .....+++++|.+ +...|++|+.+|.  |+.....+...        
T Consensus       313 sDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~--v~~~~r~g~~~~~~~~~~~  390 (555)
T KOG1587|consen  313 SDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGK--VYKGCRKGYTPAPEVSYKG  390 (555)
T ss_pred             cCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcE--EEEEeccCCcccccccccc
Confidence            9999999987643221      1111      2245688999988 4668999999998  66544332111        


Q ss_pred             EeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCc-e--EEeeccCCCeeEEEEcCCC-CEEEEEeCCCeEEEEE
Q 042434          346 KAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTY-A--ERVISEEHPITSLSVSVDC-KNFIVNLNSQEIHMWD  421 (517)
Q Consensus       346 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~--~~~~~~~~~i~~~~~s~~~-~~l~~~~~d~~i~~~d  421 (517)
                      ......+.++|.++.++|-+..++..+.|.++++|..... .  .....+...+++++|||-. ..|+++..+|.+.+||
T Consensus       391 ~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWD  470 (555)
T KOG1587|consen  391 HSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWD  470 (555)
T ss_pred             cccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhh
Confidence            1223345578999999998887666666999999998732 2  2333445569999999964 5677777899999999


Q ss_pred             cCCCCc-cceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCC
Q 042434          422 VAGKWE-KPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRN  470 (517)
Q Consensus       422 ~~~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~  470 (517)
                      +..... ++......   .......+++++|+.|++|...|.+++|++..
T Consensus       471 Ll~~~~~Pv~s~~~~---~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  471 LLQDDEEPVLSQKVC---SPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             hhccccCCccccccc---ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            965422 22222222   34566777899999999999999999999863

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.78  E-value=2.7e-17  Score=138.46  Aligned_cols=249  Identities=18%  Similarity=0.285  Sum_probs=179.5

Q ss_pred             EEEeccccCcEEEEEECC-CCCEEEEeeCC-------CcEEEEEecCCCe------eeEEEEec-cCCCCEEEEEECCCC
Q 042434          215 VQILTEHKNEVWFVQFSN-NGEYLASSSSD-------CSAIIWKVLEDSK------LTLKHTLR-SHQNPVSFVAWSPDD  279 (517)
Q Consensus       215 ~~~l~~h~~~v~~~~~s~-~~~~l~t~~~d-------g~i~iw~~~~~~~------~~~~~~~~-~h~~~v~~l~~s~~~  279 (517)
                      .++|..|.+.|+.++-+| +.+.|+|+..+       -.+.||.+.....      ++.+..+. .+-+.|.|+.|.|++
T Consensus        56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns  135 (370)
T KOG1007|consen   56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS  135 (370)
T ss_pred             hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC
Confidence            356778999999999999 66677776442       2467999864322      22233332 355689999999999


Q ss_pred             CeEEEEeCCCeEEEEECCCCcE-EEEeC-----CCCCceEEEEEeC--CCCeEEEeeCCCceeEEEEeCCC-CeeEeeeC
Q 042434          280 TKLLTCGNAEVLKLWDVETGIC-KHTFG-----DHGFIVSSCAWFP--DSKRLVCGSSDTEKGIFMCDCDG-NEIKAWRG  350 (517)
Q Consensus       280 ~~l~s~~~dg~i~iwd~~~~~~-~~~~~-----~~~~~v~~i~~~~--~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~  350 (517)
                      ..+++-. |..|.+|++..+.. +..+.     .+....++-+|+|  +++.+++.+ |++  ++.||.++ ++...+..
T Consensus       136 ~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~t--l~~~D~RT~~~~~sI~d  211 (370)
T KOG1007|consen  136 DKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DST--LQFWDLRTMKKNNSIED  211 (370)
T ss_pred             CeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCc--EEEEEccchhhhcchhh
Confidence            9999876 78999999988765 33332     3456778889999  677777654 556  89999885 44455666


Q ss_pred             cCCCceEEEEEccCCC-EEEEEeCCCcEEEEECCCce---EEeeccCCCeeEEEEcCC-CCEEEEEeCCCeEEEEEcCCC
Q 042434          351 TRIPKVLDLAVTPDGE-NLISVLSDKDIRILNLGTYA---ERVISEEHPITSLSVSVD-CKNFIVNLNSQEIHMWDVAGK  425 (517)
Q Consensus       351 ~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~  425 (517)
                      .|...+..+.|+|+.+ +|++++.||.|++||++..+   .....|.+.+.++.|+|. ...+++++.|..|.+|-...-
T Consensus       212 AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~sv  291 (370)
T KOG1007|consen  212 AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSV  291 (370)
T ss_pred             hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccc
Confidence            6666899999999877 67889999999999999877   556678899999999995 567788899999999876331


Q ss_pred             C----------------------------ccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecC
Q 042434          426 W----------------------------EKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRR  469 (517)
Q Consensus       426 ~----------------------------~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~  469 (517)
                      .                            ....++..|...++.+.  +.+.|.-.+|+-+.||.+.|=.+.
T Consensus       292 SSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~a--WSsadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  292 SSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALA--WSSADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             ccccccccccccccCcchhhHHhcccccccccccccccccceEEEe--eccCCCeeEEEeccCceEEeecCC
Confidence            1                            11123444555544332  334566677888999998876654

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=1.1e-17  Score=144.10  Aligned_cols=268  Identities=15%  Similarity=0.189  Sum_probs=187.6

Q ss_pred             ccccccCCCcccccCCCcccEEEeccccCcEEEEEECC--CCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCC-CCEE
Q 042434          195 VAISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSN--NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQ-NPVS  271 (517)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~--~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~-~~v~  271 (517)
                      .+++++.+....++.-..+.+..+++|...++.++|..  .+..+.+|+.||+|++||+....+... ..+..+. .+..
T Consensus        43 vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~-~~~~~~~~~~f~  121 (376)
T KOG1188|consen   43 VAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESAR-ISWTQQSGTPFI  121 (376)
T ss_pred             EEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhh-eeccCCCCCcce
Confidence            47888888888889888999999999999999999977  567899999999999999986654333 3344555 5777


Q ss_pred             EEEECCCCCeEEEEeC----CCeEEEEECCCCcE-EEEe-CCCCCceEEEEEeC-CCCeEEEeeCCCceeEEEEeCCCCe
Q 042434          272 FVAWSPDDTKLLTCGN----AEVLKLWDVETGIC-KHTF-GDHGFIVSSCAWFP-DSKRLVCGSSDTEKGIFMCDCDGNE  344 (517)
Q Consensus       272 ~l~~s~~~~~l~s~~~----dg~i~iwd~~~~~~-~~~~-~~~~~~v~~i~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~  344 (517)
                      |++....++.+++|..    +-.|.+||++..+. ++.+ ..|...|+++.|+| +.+.|++||.||.  +-++|+....
T Consensus       122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGL--vnlfD~~~d~  199 (376)
T KOG1188|consen  122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGL--VNLFDTKKDN  199 (376)
T ss_pred             EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccce--EEeeecCCCc
Confidence            8887777888888743    56899999988765 5444 57999999999999 5679999999999  5566665321


Q ss_pred             ----eEeeeCcCCCceEEEEEccCC-CEEEEEeCCCcEEEEECCCceEEeeccCCCe------------eEE-EEcC-CC
Q 042434          345 ----IKAWRGTRIPKVLDLAVTPDG-ENLISVLSDKDIRILNLGTYAERVISEEHPI------------TSL-SVSV-DC  405 (517)
Q Consensus       345 ----~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i------------~~~-~~s~-~~  405 (517)
                          +.... .+...|.++.|..++ +.+.+-+...+..+|+++.+..........+            .-+ ..+| +.
T Consensus       200 EeDaL~~vi-N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~  278 (376)
T KOG1188|consen  200 EEDALLHVI-NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDK  278 (376)
T ss_pred             chhhHHHhh-cccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCc
Confidence                11111 223469999999877 4688889999999999987762222111111            011 1123 33


Q ss_pred             CEEEEEeC-CCeEEEEEcC---CC--CccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEec
Q 042434          406 KNFIVNLN-SQEIHMWDVA---GK--WEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNR  468 (517)
Q Consensus       406 ~~l~~~~~-d~~i~~~d~~---~~--~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~  468 (517)
                      ..+++++. .+...++-+.   .+  ...+..+.++  ....++.++|...+.++++|++||.+.+|..
T Consensus       279 ~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~--~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~  345 (376)
T KOG1188|consen  279 DTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGG--HEEIVRDILFDVKNDVLYTGGEDGLLQAWKV  345 (376)
T ss_pred             ceEEEeccccCceeEEEeeecccccccCccccccCC--cHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence            44444443 4554444432   11  1223333332  2334677777888999999999999999985

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.78  E-value=4.3e-17  Score=143.03  Aligned_cols=228  Identities=17%  Similarity=0.261  Sum_probs=165.9

Q ss_pred             EEeccCCCCEEEEEECC-CCCeEEEEeCCCeEEEEECCCC-------cEEEEeCCCCCceEEEEEeCC-CCeEEEeeCCC
Q 042434          261 HTLRSHQNPVSFVAWSP-DDTKLLTCGNAEVLKLWDVETG-------ICKHTFGDHGFIVSSCAWFPD-SKRLVCGSSDT  331 (517)
Q Consensus       261 ~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~d~  331 (517)
                      ..+.+|+++|..++|+| +...||+||.|.+|.||.+..+       +++..+.+|...|-.++|+|. .+.|++++.|.
T Consensus        75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn  154 (472)
T KOG0303|consen   75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN  154 (472)
T ss_pred             CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence            45679999999999999 5578999999999999999654       456677899999999999996 56788999999


Q ss_pred             ceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceEEe--ecc-CCCeeEEEEcCCCCEE
Q 042434          332 EKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERV--ISE-EHPITSLSVSVDCKNF  408 (517)
Q Consensus       332 ~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~-~~~i~~~~~s~~~~~l  408 (517)
                      .  |.+|+..+........ |...|.++.|+.||.++++.+.|..|+|||.++++...  ..| +.....+.|-.+|..+
T Consensus       155 ~--v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~  231 (472)
T KOG0303|consen  155 T--VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIF  231 (472)
T ss_pred             e--EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCcee
Confidence            9  8888887655433333 66799999999999999999999999999999988322  233 3456677788888855


Q ss_pred             EEEe---CCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEE-EecCCCcEEEEecCCCce-eEEecC--CC
Q 042434          409 IVNL---NSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIA-SGSENSQIYIWNRRNSKP-IEILSG--HS  481 (517)
Q Consensus       409 ~~~~---~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~~-~~~~~~--h~  481 (517)
                      -+|.   .+..+.+||..+.... ..+...... ..+-.-++.+|.+.++ +|-.|+.|+.|.+.+..+ ++.+..  ..
T Consensus       232 tTGfsr~seRq~aLwdp~nl~eP-~~~~elDtS-nGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~  309 (472)
T KOG0303|consen  232 TTGFSRMSERQIALWDPNNLEEP-IALQELDTS-NGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSK  309 (472)
T ss_pred             eeccccccccceeccCcccccCc-ceeEEeccC-CceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccC
Confidence            5553   3678999998765333 222222221 1244556688888775 455689999999876653 222221  23


Q ss_pred             CCeeEEEecCCC
Q 042434          482 MTVNCVSWNPKR  493 (517)
Q Consensus       482 ~~v~~v~~~~~~  493 (517)
                      .+-.++.|-|..
T Consensus       310 epQRG~g~mPKR  321 (472)
T KOG0303|consen  310 EPQRGMGFMPKR  321 (472)
T ss_pred             Cccccccccccc
Confidence            344555565543

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=7.6e-16  Score=126.71  Aligned_cols=272  Identities=14%  Similarity=0.168  Sum_probs=189.6

Q ss_pred             CcEEEEEECCCCCEEEEeeCCCcEEEEEecCC-------CeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEE
Q 042434          223 NEVWFVQFSNNGEYLASSSSDCSAIIWKVLED-------SKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWD  295 (517)
Q Consensus       223 ~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~-------~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd  295 (517)
                      ..|.+-+++|.+++|++|+.+|.|.+..+.+-       .....+...++|+++|..++|+  ..+|++|+ ||.|+-|.
T Consensus        11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~   87 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE   87 (325)
T ss_pred             HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence            44666789999999999999999999988431       1123445568999999999998  45777765 59999997


Q ss_pred             CCCCcE------EEEe--CC-----CCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEc
Q 042434          296 VETGIC------KHTF--GD-----HGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVT  362 (517)
Q Consensus       296 ~~~~~~------~~~~--~~-----~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~  362 (517)
                      ......      ....  ..     .-..|.++...|..+.+++++.|+.  ++.||++...++....+|.+.+.++.--
T Consensus        88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~--~y~~dlE~G~i~r~~rGHtDYvH~vv~R  165 (325)
T KOG0649|consen   88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGV--IYQVDLEDGRIQREYRGHTDYVHSVVGR  165 (325)
T ss_pred             ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeE--EEEEEecCCEEEEEEcCCcceeeeeeec
Confidence            754321      1111  11     1245788999998888888888888  9999999888877777777899999886


Q ss_pred             cCCCEEEEEeCCCcEEEEECCCceE-Eeecc-----------CCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccce
Q 042434          363 PDGENLISVLSDKDIRILNLGTYAE-RVISE-----------EHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPF  430 (517)
Q Consensus       363 ~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~-----------~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~  430 (517)
                      .....+++|+.||++++||+++.+. ..+..           ...|.+++  -+..++++|+ ...+.+|.++.. ....
T Consensus       166 ~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGg-Gp~lslwhLrss-e~t~  241 (325)
T KOG0649|consen  166 NANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGG-GPKLSLWHLRSS-ESTC  241 (325)
T ss_pred             ccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecC-CCceeEEeccCC-CceE
Confidence            7777899999999999999999872 22211           11234444  3455666554 567999999875 3333


Q ss_pred             EEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeC
Q 042434          431 KYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWG  510 (517)
Q Consensus       431 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~  510 (517)
                      .+.-.. .   +..+.  -+...+++++..+.|.-|.+. |.+-...+......++..|+..--+++..++....+.|+.
T Consensus       242 vfpipa-~---v~~v~--F~~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~  314 (325)
T KOG0649|consen  242 VFPIPA-R---VHLVD--FVDDCVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHILK  314 (325)
T ss_pred             EEeccc-c---eeEee--eecceEEEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEecccceeeeeee
Confidence            332211 1   11222  245578888888889999864 6666666665666777777654335666777777777753

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.78  E-value=1.9e-16  Score=133.55  Aligned_cols=281  Identities=19%  Similarity=0.259  Sum_probs=197.1

Q ss_pred             EEEeccccCcEEEEEECC---CCCEEEEeeC----CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCC-----CeE
Q 042434          215 VQILTEHKNEVWFVQFSN---NGEYLASSSS----DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDD-----TKL  282 (517)
Q Consensus       215 ~~~l~~h~~~v~~~~~s~---~~~~l~t~~~----dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-----~~l  282 (517)
                      +..+.. .-.++++.||.   .+.+||.|+.    .+.|.|-.+.....-.....-..|.-+++.+.|.|+.     .+|
T Consensus        38 iy~Y~a-p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlL  116 (364)
T KOG0290|consen   38 IYTYNA-PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLL  116 (364)
T ss_pred             EEEecC-CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchh
Confidence            444442 34677888884   3457888874    4567777665332211112225689999999999986     345


Q ss_pred             EEEeCCCeEEEEECCCC--cEE--EE-----eCCCCCceEEEEEeC-CCCeEEEeeCCCceeEEEEeCCCC---eeEeee
Q 042434          283 LTCGNAEVLKLWDVETG--ICK--HT-----FGDHGFIVSSCAWFP-DSKRLVCGSSDTEKGIFMCDCDGN---EIKAWR  349 (517)
Q Consensus       283 ~s~~~dg~i~iwd~~~~--~~~--~~-----~~~~~~~v~~i~~~~-~~~~l~~~~~d~~v~i~~~~~~~~---~~~~~~  349 (517)
                      |++  +..+++|.+...  +..  ..     -..+..++++..|+. +.+++.+++-|-+  ..+||+...   .+++..
T Consensus       117 ATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTT--CTiWdie~~~~~~vkTQL  192 (364)
T KOG0290|consen  117 ATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTT--CTIWDIETGVSGTVKTQL  192 (364)
T ss_pred             hcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCe--EEEEEEeeccccceeeEE
Confidence            554  337999998742  111  11     124578899999987 6788999999999  666666543   345555


Q ss_pred             CcCCCceEEEEEccCCC-EEEEEeCCCcEEEEECCCce-E-Eeec---cCCCeeEEEEcCC-CCEEEEEeC-CCeEEEEE
Q 042434          350 GTRIPKVLDLAVTPDGE-NLISVLSDKDIRILNLGTYA-E-RVIS---EEHPITSLSVSVD-CKNFIVNLN-SQEIHMWD  421 (517)
Q Consensus       350 ~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~-~-~~~~---~~~~i~~~~~s~~-~~~l~~~~~-d~~i~~~d  421 (517)
                      ..|...|.+++|..++. .+++.+.||.+++||++... . ....   ...+...++|++. .+++++-.. ...|.+.|
T Consensus       193 IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLD  272 (364)
T KOG0290|consen  193 IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILD  272 (364)
T ss_pred             EecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEE
Confidence            55666999999998665 78899999999999999887 2 2222   1446778888874 456666554 45799999


Q ss_pred             cCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCc------eeEEecCCCCCeeEEEecCCCCc
Q 042434          422 VAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSK------PIEILSGHSMTVNCVSWNPKRPK  495 (517)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~h~~~v~~v~~~~~~~~  495 (517)
                      ++.....+..+.+|...+..|.+.  ......|++++.|..+.+||+.+.-      ++..+. -.+.|+.+.|++..+.
T Consensus       273 iR~P~tpva~L~~H~a~VNgIaWa--PhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~D  349 (364)
T KOG0290|consen  273 IRVPCTPVARLRNHQASVNGIAWA--PHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPD  349 (364)
T ss_pred             ecCCCcceehhhcCcccccceEec--CCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCC
Confidence            999888899999999886666554  2346789999999999999987531      233333 4678999999988777


Q ss_pred             EEEEeeCC
Q 042434          496 MLASASDD  503 (517)
Q Consensus       496 ~l~s~~~d  503 (517)
                      .++.+...
T Consensus       350 wiai~~~k  357 (364)
T KOG0290|consen  350 WIAICFGK  357 (364)
T ss_pred             EEEEEecC
Confidence            78776644

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.78  E-value=2.3e-16  Score=152.04  Aligned_cols=262  Identities=15%  Similarity=0.227  Sum_probs=189.2

Q ss_pred             CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCC-CCeEEEEeCCCeEEEEECCCCcE--EE----EeCCCCCceEEE
Q 042434          243 DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPD-DTKLLTCGNAEVLKLWDVETGIC--KH----TFGDHGFIVSSC  315 (517)
Q Consensus       243 dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~~--~~----~~~~~~~~v~~i  315 (517)
                      ++.+.||++.....  +...+. -...|+|+.|+|. ..+++.|+.+|.|.+||+..+..  ..    ....|..+++.+
T Consensus       221 ~~~~~vW~~~~p~~--Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~v  297 (555)
T KOG1587|consen  221 DGVLLVWSLKNPNT--PELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAV  297 (555)
T ss_pred             CceEEEEecCCCCC--ceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEE
Confidence            35799999976533  333332 4688999999995 57788888999999999987654  22    223689999999


Q ss_pred             EEeCCCCe--EEEeeCCCceeEEEEeCCC--CeeEee----------eCcCCCceEEEEEccCC-CEEEEEeCCCcEEEE
Q 042434          316 AWFPDSKR--LVCGSSDTEKGIFMCDCDG--NEIKAW----------RGTRIPKVLDLAVTPDG-ENLISVLSDKDIRIL  380 (517)
Q Consensus       316 ~~~~~~~~--l~~~~~d~~v~i~~~~~~~--~~~~~~----------~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~  380 (517)
                      .|..+..-  |++++.||.  |..|+++.  .+....          .......+++++|.+.. ..+++|+.+|.|..-
T Consensus       298 vW~~~~~~~~f~s~ssDG~--i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~  375 (555)
T KOG1587|consen  298 VWLQNEHNTEFFSLSSDGS--ICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKG  375 (555)
T ss_pred             EEeccCCCCceEEEecCCc--EeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEE
Confidence            99876544  999999999  66666553  111110          11223368889998854 578999999998874


Q ss_pred             ECCCce----------EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCC
Q 042434          381 NLGTYA----------ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLD  450 (517)
Q Consensus       381 d~~~~~----------~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  450 (517)
                      +-....          .....|.++|+++.++|=+..++..+.|.++++|.......+...+..+...   +..+.|||-
T Consensus       376 ~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~---v~~vaWSpt  452 (555)
T KOG1587|consen  376 CRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDY---VTDVAWSPT  452 (555)
T ss_pred             eccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccce---eeeeEEcCc
Confidence            433222          2445678899999999977666666669999999986333555555444433   555666775


Q ss_pred             C-cEEEEecCCCcEEEEecCCC--ceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434          451 G-TFIASGSENSQIYIWNRRNS--KPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ  513 (517)
Q Consensus       451 ~-~~l~~~~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~  513 (517)
                      - ..++++..||.|.+||+...  .++.+...+....+.+.|++.| .+++.|...|++++|++..
T Consensus       453 rpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g-~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  453 RPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNG-KLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             CceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCC-cEEEEecCCCcEEEEEcCc
Confidence            4 57788888999999998654  5666666667778889999989 7999999999999999853

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.77  E-value=1.1e-17  Score=148.37  Aligned_cols=193  Identities=21%  Similarity=0.257  Sum_probs=147.3

Q ss_pred             EEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEe
Q 042434          226 WFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTF  305 (517)
Q Consensus       226 ~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  305 (517)
                      .+++|+++|..|++|+.||++|||++.+.   ........|...|.++.|+|||++|++.+.| ..+||++++|.++...
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~---~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~  223 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM---LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK  223 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcc---hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence            78999999999999999999999998543   3445667799999999999999999999999 9999999999777666


Q ss_pred             CC--CCCceEEEEEeCCC---CeEEEe--eCCCceeEEEEeCC--C--CeeEeee-CcCCCceEEEEEccCCCEEEEEeC
Q 042434          306 GD--HGFIVSSCAWFPDS---KRLVCG--SSDTEKGIFMCDCD--G--NEIKAWR-GTRIPKVLDLAVTPDGENLISVLS  373 (517)
Q Consensus       306 ~~--~~~~v~~i~~~~~~---~~l~~~--~~d~~v~i~~~~~~--~--~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~  373 (517)
                      ..  .+.....+.|+.|+   .+.+.+  ...+.  +..++..  .  ..++... ......|.+++.+++|++++.|+.
T Consensus       224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~--v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~  301 (398)
T KOG0771|consen  224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGG--VRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTM  301 (398)
T ss_pred             CCcccchhhhhceecccCCCceEEEEEecCCCCc--eeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEecc
Confidence            42  34556778888876   333333  23333  3333322  1  1111111 111237999999999999999999


Q ss_pred             CCcEEEEECCCce---EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 042434          374 DKDIRILNLGTYA---ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAG  424 (517)
Q Consensus       374 dg~i~i~d~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~  424 (517)
                      ||.|.|++..+.+   .....|...|+.+.|+|+.++++..+.+..+.+..+..
T Consensus       302 dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  302 DGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             CCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            9999999998877   33345777899999999999999999898888887743

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.77  E-value=7.2e-17  Score=138.41  Aligned_cols=278  Identities=18%  Similarity=0.289  Sum_probs=191.3

Q ss_pred             EEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEE-eCCCeEEEEECCCCcEEEEe
Q 042434          227 FVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTC-GNAEVLKLWDVETGICKHTF  305 (517)
Q Consensus       227 ~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~  305 (517)
                      -++|||+|+|+|+++.- .+.|-|.++   ++..+.+ .--+.|..+.|..|..+++.+ ..++.|.+|++...+-...+
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~t---lq~~qlf-~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckI   87 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSET---LQLHQLF-LCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKI   87 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccch---hhHHHHH-HHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEe
Confidence            46899999999999765 677766632   2222211 123568889999998777655 56889999999988888888


Q ss_pred             CCCCCceEEEEEeCCCCeEEE-eeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCC----------
Q 042434          306 GDHGFIVSSCAWFPDSKRLVC-GSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSD----------  374 (517)
Q Consensus       306 ~~~~~~v~~i~~~~~~~~l~~-~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----------  374 (517)
                      .....++.+++|+|||+.++. ...+-.  |-+|.+.+.......... ..+..++|+|||++.+..+.-          
T Consensus        88 deg~agls~~~WSPdgrhiL~tseF~lr--iTVWSL~t~~~~~~~~pK-~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~  164 (447)
T KOG4497|consen   88 DEGQAGLSSISWSPDGRHILLTSEFDLR--ITVWSLNTQKGYLLPHPK-TNVKGYAFHPDGQFCAILSRRDCKDYVQISS  164 (447)
T ss_pred             ccCCCcceeeeECCCcceEeeeecceeE--EEEEEeccceeEEecccc-cCceeEEECCCCceeeeeecccHHHHHHHHh
Confidence            888999999999999976655 445555  777777765554443333 246788899998887766541          


Q ss_pred             --------------------------CcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCC---
Q 042434          375 --------------------------KDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAG---  424 (517)
Q Consensus       375 --------------------------g~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~---  424 (517)
                                                ..+.+||.--.- .....-+-.+..++|+|.++++++|+.|+.+++.+--+   
T Consensus       165 c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~  244 (447)
T KOG4497|consen  165 CKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKP  244 (447)
T ss_pred             hHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeee
Confidence                                      234455532111 12223345688899999999999999999887754211   


Q ss_pred             ------------C-------------------------------C----------ccceE---E---eCcccCceEEEee
Q 042434          425 ------------K-------------------------------W----------EKPFK---Y---TGHSQNKYVIRSC  445 (517)
Q Consensus       425 ------------~-------------------------------~----------~~~~~---~---~~~~~~~~~i~~~  445 (517)
                                  .                               +          .....   +   ....++...+..+
T Consensus       245 f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~l  324 (447)
T KOG4497|consen  245 FGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKL  324 (447)
T ss_pred             hhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCccccccee
Confidence                        0                               0          00000   0   1111223345567


Q ss_pred             cCCCCCcEEEEecCC--CcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCC
Q 042434          446 FGGLDGTFIASGSEN--SQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQS  514 (517)
Q Consensus       446 ~~s~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~  514 (517)
                      +|++|..|+++-.+.  ..+.+||++..++...+. ...+|....|+|..+ .|+.+.....+++|.+...
T Consensus       325 afs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~p-rL~vctg~srLY~W~psg~  393 (447)
T KOG4497|consen  325 AFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRP-RLVVCTGKSRLYFWAPSGP  393 (447)
T ss_pred             eecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCc-eEEEEcCCceEEEEcCCCc
Confidence            789999999987654  579999999887766665 578999999999996 5666666667999988653

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=1.2e-16  Score=140.08  Aligned_cols=250  Identities=14%  Similarity=0.137  Sum_probs=188.4

Q ss_pred             EEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECC------CCcEEEEeC-CCCCceEEEEEeCCCCeEEEeeCCCce
Q 042434          261 HTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVE------TGICKHTFG-DHGFIVSSCAWFPDSKRLVCGSSDTEK  333 (517)
Q Consensus       261 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~------~~~~~~~~~-~~~~~v~~i~~~~~~~~l~~~~~d~~v  333 (517)
                      +.+.+|.+.|.++.|+.++++|++|+.|..+++|+++      +.+++.... .|...|.|++|....+.+++|+.+++ 
T Consensus        50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~-  128 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT-  128 (609)
T ss_pred             hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce-
Confidence            4567899999999999999999999999999999985      345565554 45689999999999999999999999 


Q ss_pred             eEEEEeCCCCeeEeeeCc--CCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-----EEeeccCCCeeEEEEcCC-C
Q 042434          334 GIFMCDCDGNEIKAWRGT--RIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-----ERVISEEHPITSLSVSVD-C  405 (517)
Q Consensus       334 ~i~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~i~~~~~s~~-~  405 (517)
                       |...|..+++......+  ..+.|..+..+|..+.+++.+.++.|.+||.+...     ............+.|+|. .
T Consensus       129 -VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P  207 (609)
T KOG4227|consen  129 -VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP  207 (609)
T ss_pred             -eEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence             77788876554433332  23589999999999999999999999999998765     122234456788899995 5


Q ss_pred             CEEEEEeCCCeEEEEEcCCCCccceEEeCccc---CceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCC-
Q 042434          406 KNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQ---NKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHS-  481 (517)
Q Consensus       406 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~-  481 (517)
                      ..+++++..+.+-+||.+.....+..+.+...   .........|+|+|+.+.+--....-.+||+.+.++...-..|. 
T Consensus       208 ~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~  287 (609)
T KOG4227|consen  208 ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNP  287 (609)
T ss_pred             eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCC
Confidence            67788888899999999876555554443322   12222344568999988887766667788887755432222232 


Q ss_pred             ------CCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCC
Q 042434          482 ------MTVNCVSWNPKRPKMLASASDDHTIRIWGPCQS  514 (517)
Q Consensus       482 ------~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~  514 (517)
                            ..+.+++|..+.  -++||+++-.|++|.+...
T Consensus       288 ~GY~N~~T~KS~~F~~D~--~v~tGSD~~~i~~WklP~~  324 (609)
T KOG4227|consen  288 NGYCNIKTIKSMTFIDDY--TVATGSDHWGIHIWKLPRA  324 (609)
T ss_pred             Ccceeeeeeeeeeeecce--eeeccCcccceEEEecCCC
Confidence                  356788888775  5999999999999998643

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.76  E-value=1.5e-18  Score=165.63  Aligned_cols=243  Identities=17%  Similarity=0.227  Sum_probs=194.2

Q ss_pred             EEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEe
Q 042434          260 KHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCD  339 (517)
Q Consensus       260 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~  339 (517)
                      ++.+.+|.++|.|+.|...|.++++|+.|..++||..+++.+.....+|.+.|+.++.+.+...+++++.|..  |.+|.
T Consensus       183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~v--IrvWr  260 (1113)
T KOG0644|consen  183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKV--IRVWR  260 (1113)
T ss_pred             HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCce--EEEEe
Confidence            3556789999999999999999999999999999999999999999999999999999999999999999998  77788


Q ss_pred             CCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCc-e-----EEeeccCCCeeEEEEcCCCCEEEEEeC
Q 042434          340 CDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTY-A-----ERVISEEHPITSLSVSVDCKNFIVNLN  413 (517)
Q Consensus       340 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~-----~~~~~~~~~i~~~~~s~~~~~l~~~~~  413 (517)
                      ...........++.+.|++++|+|-.    +.+.||++++||.+-. .     ........-+.++.|-.++..+++++.
T Consensus       261 l~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~  336 (1113)
T KOG0644|consen  261 LPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSR  336 (1113)
T ss_pred             cCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccC
Confidence            77655555555566799999999975    7789999999998821 1     112233455777788888889999999


Q ss_pred             CCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCC
Q 042434          414 SQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKR  493 (517)
Q Consensus       414 d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~  493 (517)
                      |+.-..|.+...       ..+....  +-....+.-..+.+++-.+-.+++|++.+|.+.+.+.+|...+..+.++|-+
T Consensus       337 d~ea~n~e~~~l-------~~~~~~l--if~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn  407 (1113)
T KOG0644|consen  337 DGEARNHEFEQL-------AWRSNLL--IFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFN  407 (1113)
T ss_pred             CcccccchhhHh-------hhhccce--EEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCC
Confidence            998887776321       0011000  1011111122466777778899999999999999999999999999999999


Q ss_pred             CcEEEEeeCCCcEEEeCCCCCCCC
Q 042434          494 PKMLASASDDHTIRIWGPCQSSEV  517 (517)
Q Consensus       494 ~~~l~s~~~dg~v~iw~~~~~~~v  517 (517)
                      +.+..+++.||...|||+-.|.++
T Consensus       408 ~ri~msag~dgst~iwdi~eg~pi  431 (1113)
T KOG0644|consen  408 PRIAMSAGYDGSTIIWDIWEGIPI  431 (1113)
T ss_pred             cHhhhhccCCCceEeeecccCCcc
Confidence            888899999999999999887653

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.76  E-value=1.4e-15  Score=147.42  Aligned_cols=236  Identities=18%  Similarity=0.186  Sum_probs=165.6

Q ss_pred             CcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeC---CCeEEEEECCCCcEEEEeCCCCCceEEEEEeCC
Q 042434          244 CSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGN---AEVLKLWDVETGICKHTFGDHGFIVSSCAWFPD  320 (517)
Q Consensus       244 g~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~  320 (517)
                      ..|.+||.+....    ..+..+...+.+.+|+|||+.|+..+.   +..+.+|++.+|+..... .....+....|+||
T Consensus       179 ~~l~~~d~dg~~~----~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~~~~~~~~~SPD  253 (429)
T PRK03629        179 YELRVSDYDGYNQ----FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPRHNGAPAFSPD  253 (429)
T ss_pred             eeEEEEcCCCCCC----EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCCCCcCCeEECCC
Confidence            3688888764332    233446778999999999999987543   357999999888654322 33334557899999


Q ss_pred             CCeEEEe-eCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCC-C--cEEEEECCCce-EEeeccCCC
Q 042434          321 SKRLVCG-SSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSD-K--DIRILNLGTYA-ERVISEEHP  395 (517)
Q Consensus       321 ~~~l~~~-~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~-~~~~~~~~~  395 (517)
                      |+.|+.. +.+|...||.||..+.....+.... ..+....|+|||+.++..+.+ +  .|+++|+.++. .........
T Consensus       254 G~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~-~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~  332 (429)
T PRK03629        254 GSKLAFALSKTGSLNLYVMDLASGQIRQVTDGR-SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQ  332 (429)
T ss_pred             CCEEEEEEcCCCCcEEEEEECCCCCEEEccCCC-CCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCC
Confidence            9988865 5566666999999877666655443 357789999999988777654 3  45556777665 333334445


Q ss_pred             eeEEEEcCCCCEEEEEeCC---CeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCc---EEEEecC
Q 042434          396 ITSLSVSVDCKNFIVNLNS---QEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQ---IYIWNRR  469 (517)
Q Consensus       396 i~~~~~s~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~---i~iwd~~  469 (517)
                      .....|+|||++++..+.+   ..|.+||+.++.  ...+.....    .....|+|||++|+.++.++.   ++++++ 
T Consensus       333 ~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~--~~~Lt~~~~----~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-  405 (429)
T PRK03629        333 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG--VQVLTDTFL----DETPSIAPNGTMVIYSSSQGMGSVLNLVST-  405 (429)
T ss_pred             ccCEEECCCCCEEEEEEccCCCceEEEEECCCCC--eEEeCCCCC----CCCceECCCCCEEEEEEcCCCceEEEEEEC-
Confidence            6678999999999876653   358889987652  222222111    123446899999999888764   677777 


Q ss_pred             CCceeEEecCCCCCeeEEEecCC
Q 042434          470 NSKPIEILSGHSMTVNCVSWNPK  492 (517)
Q Consensus       470 ~~~~~~~~~~h~~~v~~v~~~~~  492 (517)
                      +|.....+.+|.+.+...+|+|-
T Consensus       406 ~G~~~~~l~~~~~~~~~p~Wsp~  428 (429)
T PRK03629        406 DGRFKARLPATDGQVKFPAWSPY  428 (429)
T ss_pred             CCCCeEECccCCCCcCCcccCCC
Confidence            56667778888899999999973

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.76  E-value=2.1e-16  Score=153.66  Aligned_cols=219  Identities=16%  Similarity=0.207  Sum_probs=154.6

Q ss_pred             CCCcccEEEeccccCcEEEEEECCCCCEEEEeeCC---CcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEE
Q 042434          209 QIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSD---CSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTC  285 (517)
Q Consensus       209 ~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d---g~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~  285 (517)
                      ...+...+.+..|...+.+.+|||||+.|+.++.+   ..|++||+.++.. ..+..+.+|   ...++|+|||+.|+.+
T Consensus       190 d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~-~~l~~~~g~---~~~~~wSPDG~~La~~  265 (429)
T PRK01742        190 DYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR-KVVASFRGH---NGAPAFSPDGSRLAFA  265 (429)
T ss_pred             CCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce-EEEecCCCc---cCceeECCCCCEEEEE
Confidence            34455567788899999999999999999987654   3699999976532 233334443   3468999999988876


Q ss_pred             e-CCCeEEE--EECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEee-CCCceeEEEEeCCCCeeEeeeCcCCCceEEEEE
Q 042434          286 G-NAEVLKL--WDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGS-SDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAV  361 (517)
Q Consensus       286 ~-~dg~i~i--wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~  361 (517)
                      + .+|.+.|  ||+.++.. ..+..+...+.+..|+|||+.|+.++ .++...||.++..+...... ... .  ....|
T Consensus       266 ~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~-~--~~~~~  340 (429)
T PRK01742        266 SSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGR-G--YSAQI  340 (429)
T ss_pred             EecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCC-C--CCccC
Confidence            4 6776555  56666654 44556667788999999999877655 56787788888876555443 222 1  45789


Q ss_pred             ccCCCEEEEEeCCCcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCC-CCccceEEeCccc
Q 042434          362 TPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAG-KWEKPFKYTGHSQ  437 (517)
Q Consensus       362 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~  437 (517)
                      +|+|+.++.++.++ +.+||+.++.............+.|+|+|+.++.++.++...+|++.. .......+..+..
T Consensus       341 SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g  416 (429)
T PRK01742        341 SADGKTLVMINGDN-VVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDG  416 (429)
T ss_pred             CCCCCEEEEEcCCC-EEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCC
Confidence            99999998887765 566999887633332223456788999999999999999888777632 1244555555443

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.75  E-value=2e-15  Score=141.75  Aligned_cols=302  Identities=15%  Similarity=0.168  Sum_probs=187.8

Q ss_pred             CcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeE
Q 042434          203 HCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKL  282 (517)
Q Consensus       203 ~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l  282 (517)
                      ....++....+.+..+......-..+.|+|||+++++++.||.|.++|+.+.+   .+.++.. .....++++++||+++
T Consensus        17 ~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~---~v~~i~~-G~~~~~i~~s~DG~~~   92 (369)
T PF02239_consen   17 SVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGK---VVATIKV-GGNPRGIAVSPDGKYV   92 (369)
T ss_dssp             EEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS---EEEEEE--SSEEEEEEE--TTTEE
T ss_pred             EEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCccc---EEEEEec-CCCcceEEEcCCCCEE
Confidence            34456666677888887665554567899999999999999999999997765   4444443 3456889999999999


Q ss_pred             EEEe-CCCeEEEEECCCCcEEEEeCCC-------CCceEEEEEeCCCCeEEEeeCC-CceeEEEEeCCCC-eeEeeeCcC
Q 042434          283 LTCG-NAEVLKLWDVETGICKHTFGDH-------GFIVSSCAWFPDSKRLVCGSSD-TEKGIFMCDCDGN-EIKAWRGTR  352 (517)
Q Consensus       283 ~s~~-~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~i~~~~~~~~l~~~~~d-~~v~i~~~~~~~~-~~~~~~~~~  352 (517)
                      ++++ .++.+.++|.++.+.++.+...       ...+.++..+|....++..-.| +.  +|..|.... .+.......
T Consensus        93 ~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~--I~vVdy~d~~~~~~~~i~~  170 (369)
T PF02239_consen   93 YVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGE--IWVVDYSDPKNLKVTTIKV  170 (369)
T ss_dssp             EEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTE--EEEEETTTSSCEEEEEEE-
T ss_pred             EEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCe--EEEEEeccccccceeeecc
Confidence            8775 5889999999999998877432       3567888888988867666555 55  888886542 222222222


Q ss_pred             CCceEEEEEccCCCEEEEE-eCCCcEEEEECCCceEEee------ccCCCeeEEEEcCCC----------CEEEEEeCCC
Q 042434          353 IPKVLDLAVTPDGENLISV-LSDKDIRILNLGTYAERVI------SEEHPITSLSVSVDC----------KNFIVNLNSQ  415 (517)
Q Consensus       353 ~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~------~~~~~i~~~~~s~~~----------~~l~~~~~d~  415 (517)
                      ........|+|++++++++ ..++.|-++|..+.+....      .+..+...+ .+|..          ...++....+
T Consensus       171 g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~  249 (369)
T PF02239_consen  171 GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTD  249 (369)
T ss_dssp             -TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--
T ss_pred             cccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCC
Confidence            2367889999999987665 5567899999988773221      122222222 22322          2222222233


Q ss_pred             eEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEe----cCCCcEEEEecCCCceeEEecCC-CCCeeEEEec
Q 042434          416 EIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASG----SENSQIYIWNRRNSKPIEILSGH-SMTVNCVSWN  490 (517)
Q Consensus       416 ~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~v~~~  490 (517)
                      .+.+||... ++.+..+.....+ ..+..   +|+++++++.    ...++|.++|.++.+.+.++... ...+..+.|+
T Consensus       250 ~v~v~d~~~-wkvv~~I~~~G~g-lFi~t---hP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~  324 (369)
T PF02239_consen  250 PVSVHDDYA-WKVVKTIPTQGGG-LFIKT---HPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFN  324 (369)
T ss_dssp             TTT-STTTB-TSEEEEEE-SSSS---EE-----TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-
T ss_pred             ccccchhhc-CeEEEEEECCCCc-ceeec---CCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEEC
Confidence            444566544 3666667665554 33333   8999999988    44589999999999888887532 2358999999


Q ss_pred             CCCCcEEEEeeCCC-cEEEeCCCCCCC
Q 042434          491 PKRPKMLASASDDH-TIRIWGPCQSSE  516 (517)
Q Consensus       491 ~~~~~~l~s~~~dg-~v~iw~~~~~~~  516 (517)
                      ++|..+.+|.-.++ .|.|||..+.++
T Consensus       325 ~dG~~v~vS~~~~~~~i~v~D~~Tl~~  351 (369)
T PF02239_consen  325 PDGKEVWVSVWDGNGAIVVYDAKTLKE  351 (369)
T ss_dssp             TTSSEEEEEEE--TTEEEEEETTTTEE
T ss_pred             CCCCEEEEEEecCCCEEEEEECCCcEE
Confidence            99976666666555 899999988764

...

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.75  E-value=2.4e-17  Score=152.99  Aligned_cols=203  Identities=17%  Similarity=0.273  Sum_probs=154.3

Q ss_pred             ccCcEEEEEECC-CCCEEEEeeCCCcEEEEEecCCC----eeeEEEEeccCCCCEEEEEECC-CCCeEEEEeCCCeEEEE
Q 042434          221 HKNEVWFVQFSN-NGEYLASSSSDCSAIIWKVLEDS----KLTLKHTLRSHQNPVSFVAWSP-DDTKLLTCGNAEVLKLW  294 (517)
Q Consensus       221 h~~~v~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~----~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iw  294 (517)
                      ....|+.+.|.| |...||.++.||.|++|.+..+.    ...+...+..|...|+++.|+| ..+.|+++++|.+|++|
T Consensus       626 Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lW  705 (1012)
T KOG1445|consen  626 NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELW  705 (1012)
T ss_pred             cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeee
Confidence            456899999999 88899999999999999986543    2345567889999999999999 45789999999999999


Q ss_pred             ECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCe--eEeeeCcCCCceEEEEEccCCCEEEEEe
Q 042434          295 DVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNE--IKAWRGTRIPKVLDLAVTPDGENLISVL  372 (517)
Q Consensus       295 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~  372 (517)
                      |+.+++....+.+|.+.|..++|+|+|+.+++.+.||+  +++++.+...  +..-.+.....--.+.|..+|+++++.+
T Consensus       706 Dl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~--~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~G  783 (1012)
T KOG1445|consen  706 DLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGT--LRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVG  783 (1012)
T ss_pred             ehhhhhhhheeccCcCceeEEEECCCCcceeeeecCce--EEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEec
Confidence            99999999999999999999999999999999999999  6667766443  3333333333455678888999988887


Q ss_pred             CCC----cEEEEECCCce-----EEeeccCCCeeEEEEcCCCC-EEEEEeCCCeEEEEEcCCC
Q 042434          373 SDK----DIRILNLGTYA-----ERVISEEHPITSLSVSVDCK-NFIVNLNSQEIHMWDVAGK  425 (517)
Q Consensus       373 ~dg----~i~i~d~~~~~-----~~~~~~~~~i~~~~~s~~~~-~l~~~~~d~~i~~~d~~~~  425 (517)
                      .|.    .|.+||..+..     .........+.--.+.+|.. .+++|-.|..|.+|.+-..
T Consensus       784 fdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~e  846 (1012)
T KOG1445|consen  784 FDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYE  846 (1012)
T ss_pred             ccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecCC
Confidence            664    68888876643     11111111222223445544 4566777889999998543

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.74  E-value=1.1e-15  Score=152.30  Aligned_cols=257  Identities=14%  Similarity=0.180  Sum_probs=180.7

Q ss_pred             eEEEEeccCCCCEEEEEECCCC-CeEEEEeCCCeEEEEECCC-------CcEEEEeCCCCCceEEEEEeCCCCeEEEeeC
Q 042434          258 TLKHTLRSHQNPVSFVAWSPDD-TKLLTCGNAEVLKLWDVET-------GICKHTFGDHGFIVSSCAWFPDSKRLVCGSS  329 (517)
Q Consensus       258 ~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~  329 (517)
                      ..+..+..|...|..++.++.. .++++||.||+|++||...       .+...++......+.++...+.++.+|+++.
T Consensus      1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~ 1118 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTK 1118 (1431)
T ss_pred             eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcC
Confidence            4667788899999999988765 9999999999999999853       1233455556788999999999999999999


Q ss_pred             CCceeEEEEeCC-C-----CeeEeeeCcCCCceEEE-EEcc-CCC-EEEEEeCCCcEEEEECCCce----EEeeccCCCe
Q 042434          330 DTEKGIFMCDCD-G-----NEIKAWRGTRIPKVLDL-AVTP-DGE-NLISVLSDKDIRILNLGTYA----ERVISEEHPI  396 (517)
Q Consensus       330 d~~v~i~~~~~~-~-----~~~~~~~~~~~~~i~~~-~~~~-~~~-~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~i  396 (517)
                      ||.+.+...|.. .     .+.+.......+.+.++ ++.. .+. .++.+...+.|..||++...    .......+.|
T Consensus      1119 DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~v 1198 (1431)
T KOG1240|consen 1119 DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLV 1198 (1431)
T ss_pred             CCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccce
Confidence            999766666652 1     11122222333444444 3322 233 78888899999999998866    3344556789


Q ss_pred             eEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecC--CCcEEEEecCCCcee
Q 042434          397 TSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSE--NSQIYIWNRRNSKPI  474 (517)
Q Consensus       397 ~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~  474 (517)
                      ++++.+|.+.+++.|+..|.+.+||++-+......-.++......+.++...+.....++++.  .+.|.+|++.+|.+-
T Consensus      1199 TSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~ 1278 (1431)
T KOG1240|consen 1199 TSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQ 1278 (1431)
T ss_pred             eEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcce
Confidence            999999999999999999999999998762222222233344455666666666666666554  678999999998665


Q ss_pred             EEecCC-------------------CCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434          475 EILSGH-------------------SMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS  515 (517)
Q Consensus       475 ~~~~~h-------------------~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~  515 (517)
                      .++...                   .-......+...+ .++.+|+.|..||.||...++
T Consensus      1279 ~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~-~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1279 TVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKN-GFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred             EEEEcCCCCcchhhhcccccCCCCCcccceeeecccCC-ceeeecCCccceeeccCCCcc
Confidence            555321                   0111122232223 589999999999999998754

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.74  E-value=5.5e-17  Score=148.85  Aligned_cols=237  Identities=19%  Similarity=0.282  Sum_probs=166.9

Q ss_pred             cccCCCCCc-cccccCCCcccccCC---------CcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCC-
Q 042434          187 SCQYHNSSV-AISLYEDHCCGRDQI---------PTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDS-  255 (517)
Q Consensus       187 ~~~~~~~~~-~~~~~~~~~~~~~~~---------~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~-  255 (517)
                      ...+|+... .+....++....|.+         ..+++.++.+|.++|.|+++++++..+.+|+.||+|+.|++.... 
T Consensus       299 ~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~d  378 (577)
T KOG0642|consen  299 ALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQD  378 (577)
T ss_pred             hhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCC
Confidence            334555443 555666666554443         236788999999999999999999999999999999999764211 


Q ss_pred             ------eeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCC--CCceEEEEEeCCC-CeEEE
Q 042434          256 ------KLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDH--GFIVSSCAWFPDS-KRLVC  326 (517)
Q Consensus       256 ------~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~i~~~~~~-~~l~~  326 (517)
                            .......+.||++.|+.+++|+....|++++.||+++.|+...... .+|...  .+...++.+-... ...++
T Consensus       379 p~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~  457 (577)
T KOG0642|consen  379 PDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLA  457 (577)
T ss_pred             cccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhh
Confidence                  1234567889999999999999999999999999999999866655 444322  2233445443322 11122


Q ss_pred             eeCCCceeEEEEeCCCCeeEeeeC------cCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeE
Q 042434          327 GSSDTEKGIFMCDCDGNEIKAWRG------TRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITS  398 (517)
Q Consensus       327 ~~~d~~v~i~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~  398 (517)
                      ...-+.-.++.... ...+..+..      .....+.-+.++|.+...+++..|+.|+++|..++.  .....+...+++
T Consensus       458 s~~~~~~~~~~~ev-~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svts  536 (577)
T KOG0642|consen  458 SFRFGYTSIDDMEV-VSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTS  536 (577)
T ss_pred             hcccccccchhhhh-hhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecc
Confidence            11112100111111 111111111      112356778899999999999999999999999988  556678889999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 042434          399 LSVSVDCKNFIVNLNSQEIHMWDVAGK  425 (517)
Q Consensus       399 ~~~s~~~~~l~~~~~d~~i~~~d~~~~  425 (517)
                      +++.|+|-++++++.|+.+.+|.+...
T Consensus       537 lai~~ng~~l~s~s~d~sv~l~kld~k  563 (577)
T KOG0642|consen  537 LAIDPNGPYLMSGSHDGSVRLWKLDVK  563 (577)
T ss_pred             eeecCCCceEEeecCCceeehhhccch
Confidence            999999999999999999999998654

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=1.7e-15  Score=124.67  Aligned_cols=233  Identities=11%  Similarity=0.154  Sum_probs=171.6

Q ss_pred             CEEEEEECCCCCeEEEEeCCCeEEEEECCC----------CcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEE
Q 042434          269 PVSFVAWSPDDTKLLTCGNAEVLKLWDVET----------GICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMC  338 (517)
Q Consensus       269 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~  338 (517)
                      .|.+-+|+|.+++|++|..+|+|.+..+.+          ...+..+++|+++|..++|.  ..+|++|+. |.|+-|.|
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W   88 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEW   88 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeee
Confidence            456668999999999999999999998753          23455667999999999998  345666554 99888888


Q ss_pred             eCCCCe--eE-ee--------eCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCC
Q 042434          339 DCDGNE--IK-AW--------RGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDC  405 (517)
Q Consensus       339 ~~~~~~--~~-~~--------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~  405 (517)
                      +...+.  .+ .+        .....+.|+++...|..+.++.++.|+.++-||+++++  ....+|..-+.++.--...
T Consensus        89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~  168 (325)
T KOG0649|consen   89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNAN  168 (325)
T ss_pred             hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccC
Confidence            754221  11 11        11223578999999998888888899999999999998  5667788889999886667


Q ss_pred             CEEEEEeCCCeEEEEEcCCCCccceEEeCcccC-------ceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEec
Q 042434          406 KNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQN-------KYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILS  478 (517)
Q Consensus       406 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~-------~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  478 (517)
                      ..+++|+.||++++||.++. +.+..+......       ..-|.++  ..+..++++|+. -.+.+|++++.++..+++
T Consensus       169 ~qilsG~EDGtvRvWd~kt~-k~v~~ie~yk~~~~lRp~~g~wigal--a~~edWlvCGgG-p~lslwhLrsse~t~vfp  244 (325)
T KOG0649|consen  169 GQILSGAEDGTVRVWDTKTQ-KHVSMIEPYKNPNLLRPDWGKWIGAL--AVNEDWLVCGGG-PKLSLWHLRSSESTCVFP  244 (325)
T ss_pred             cceeecCCCccEEEEecccc-ceeEEeccccChhhcCcccCceeEEE--eccCceEEecCC-CceeEEeccCCCceEEEe
Confidence            78999999999999999887 444433322111       1122333  346668888764 469999999999888876


Q ss_pred             CCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCC
Q 042434          479 GHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPC  512 (517)
Q Consensus       479 ~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~  512 (517)
                       -.+.+..+.|..+   .++++|..+.|.-|.+.
T Consensus       245 -ipa~v~~v~F~~d---~vl~~G~g~~v~~~~l~  274 (325)
T KOG0649|consen  245 -IPARVHLVDFVDD---CVLIGGEGNHVQSYTLN  274 (325)
T ss_pred             -cccceeEeeeecc---eEEEeccccceeeeeec
Confidence             4577888888755   47777777777777654

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=4.1e-15  Score=129.44  Aligned_cols=266  Identities=18%  Similarity=0.169  Sum_probs=168.6

Q ss_pred             cccccCCCcccccCCCcccEEEec-cccCcEEEEEECC-CCCEEEEeeCCCcEEEEEecCCCeee-----------EEEE
Q 042434          196 AISLYEDHCCGRDQIPTETVQILT-EHKNEVWFVQFSN-NGEYLASSSSDCSAIIWKVLEDSKLT-----------LKHT  262 (517)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~v~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~~~-----------~~~~  262 (517)
                      ++...+|....++... .+...++ .....|+|++|-| .++-|+.|+.. -|.+|.........           .+..
T Consensus       114 ava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~  191 (445)
T KOG2139|consen  114 AVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQ  191 (445)
T ss_pred             hhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccccccccccccchhhee
Confidence            4555556665555555 3444444 3567899999999 45678888875 48999874321111           1112


Q ss_pred             eccCCCCEEEEEECCCCCeEEEEeC-CCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCC
Q 042434          263 LRSHQNPVSFVAWSPDDTKLLTCGN-AEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD  341 (517)
Q Consensus       263 ~~~h~~~v~~l~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~  341 (517)
                      ..+| .+|+++.|.+||..+++++. |..|.|||..++.++.......+.++-+.|+||+.+|++++.|+.  ..+|...
T Consensus       192 ~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~dav--frlw~e~  268 (445)
T KOG2139|consen  192 DPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAV--FRLWQEN  268 (445)
T ss_pred             CCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccce--eeeehhc
Confidence            2344 78999999999999999887 568999999999887666556677889999999999999999998  6677443


Q ss_pred             -CCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECC--Cce----------EE--------------eeccCC
Q 042434          342 -GNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLG--TYA----------ER--------------VISEEH  394 (517)
Q Consensus       342 -~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~----------~~--------------~~~~~~  394 (517)
                       ......+.... +.|...+|+|+|++++..... .-++|.+.  ...          ..              .....+
T Consensus       269 q~wt~erw~lgs-grvqtacWspcGsfLLf~~sg-sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cg  346 (445)
T KOG2139|consen  269 QSWTKERWILGS-GRVQTACWSPCGSFLLFACSG-SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCG  346 (445)
T ss_pred             ccceecceeccC-CceeeeeecCCCCEEEEEEcC-CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccC
Confidence             33333344333 389999999999976654332 22333321  110          00              001245


Q ss_pred             CeeEEEEcCCCCEEEEEeCCCe--------EEEEEcCCCCccceEEeCcccCce--EEEeecCCCCCcEEEEecCCCcEE
Q 042434          395 PITSLSVSVDCKNFIVNLNSQE--------IHMWDVAGKWEKPFKYTGHSQNKY--VIRSCFGGLDGTFIASGSENSQIY  464 (517)
Q Consensus       395 ~i~~~~~s~~~~~l~~~~~d~~--------i~~~d~~~~~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~dg~i~  464 (517)
                      ++.+++|.|.|.++++....+.        |.+||.+........+-+...+.+  .|..-....+|.+|..+-..|.+.
T Consensus       347 eaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq  426 (445)
T KOG2139|consen  347 EAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQ  426 (445)
T ss_pred             ccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceE
Confidence            7899999999999999877553        667776553222222223222211  122222223556666666666665


Q ss_pred             EEec
Q 042434          465 IWNR  468 (517)
Q Consensus       465 iwd~  468 (517)
                      -|++
T Consensus       427 ~ypl  430 (445)
T KOG2139|consen  427 RYPL  430 (445)
T ss_pred             eeee
Confidence            5554

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.73  E-value=9.8e-17  Score=146.14  Aligned_cols=252  Identities=20%  Similarity=0.286  Sum_probs=176.0

Q ss_pred             CCCCCccccccCCC-cccccCCCcccEEEeccccCcEEEEEE-CC-------CCCEEEEeeCCCcEEEEEecCCCeeeEE
Q 042434          190 YHNSSVAISLYEDH-CCGRDQIPTETVQILTEHKNEVWFVQF-SN-------NGEYLASSSSDCSAIIWKVLEDSKLTLK  260 (517)
Q Consensus       190 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~h~~~v~~~~~-s~-------~~~~l~t~~~dg~i~iw~~~~~~~~~~~  260 (517)
                      .......+...+|+ ...++.........+.-..+.|....+ -+       ....++.++.||.+.|.+-.    .+..
T Consensus        22 w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~k~----~rVE   97 (737)
T KOG1524|consen   22 WSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILNKS----ARVE   97 (737)
T ss_pred             ccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEeccc----chhh
Confidence            33333334444444 445655555544444433333332222 01       12478888899999988642    2445


Q ss_pred             EEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeC
Q 042434          261 HTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDC  340 (517)
Q Consensus       261 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~  340 (517)
                      +....|.+.|.+-.|+|||.-|++++.||.|++|. ++|-...++.....+|.|++|.|+.+.++.+..+.   +++-.+
T Consensus        98 ~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h---~~IKpL  173 (737)
T KOG1524|consen   98 RSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGH---ISIKPL  173 (737)
T ss_pred             hhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecCCe---EEEeec
Confidence            67788999999999999999999999999999998 46666556667788999999999988777665543   333333


Q ss_pred             C-CCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEE
Q 042434          341 D-GNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIH  418 (517)
Q Consensus       341 ~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~  418 (517)
                      . ...+..|..|. +-|.++.|++..+.+++|+.|-..++||..... .....+..+|++++|.|+ +.+++++.+ +++
T Consensus       174 ~~n~k~i~WkAHD-GiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R  250 (737)
T KOG1524|consen  174 AANSKIIRWRAHD-GLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TAR  250 (737)
T ss_pred             ccccceeEEeccC-cEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeeccc-cceeeeeee-eee
Confidence            3 23445566554 689999999999999999999999999987665 556678899999999999 666655532 222


Q ss_pred             EEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEe
Q 042434          419 MWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWN  467 (517)
Q Consensus       419 ~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd  467 (517)
                                   +.  ......+-.+.||+||..+++|+..|.+.+-.
T Consensus       251 -------------~~--~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~  284 (737)
T KOG1524|consen  251 -------------FS--SPRVGSIFNLSWSADGTQATCGTSTGQLIVAY  284 (737)
T ss_pred             -------------ec--CCCccceEEEEEcCCCceeeccccCceEEEee
Confidence                         11  11222355667799999999999999876543

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.72  E-value=6.2e-15  Score=143.17  Aligned_cols=236  Identities=21%  Similarity=0.200  Sum_probs=161.2

Q ss_pred             CcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCC---CeEEEEECCCCcEEEEeCCCCCceEEEEEeCC
Q 042434          244 CSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNA---EVLKLWDVETGICKHTFGDHGFIVSSCAWFPD  320 (517)
Q Consensus       244 g~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~  320 (517)
                      ..|.++|.... .   ...+..+...+.+.+|+|||+.|+..+.+   ..|.+||+.+++.... ......+.+.+|+||
T Consensus       176 ~~L~~~D~dG~-~---~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l-~~~~g~~~~~~~SPD  250 (427)
T PRK02889        176 YQLQISDADGQ-N---AQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV-ANFKGSNSAPAWSPD  250 (427)
T ss_pred             cEEEEECCCCC-C---ceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCC
Confidence            35666665322 1   13345677889999999999999887643   3699999998876543 334455678999999


Q ss_pred             CCeEEE-eeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeC-CCcEEEE--ECCCce-EEeeccCCC
Q 042434          321 SKRLVC-GSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLS-DKDIRIL--NLGTYA-ERVISEEHP  395 (517)
Q Consensus       321 ~~~l~~-~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~--d~~~~~-~~~~~~~~~  395 (517)
                      |+.++. .+.+|...+|.++..+.....+..+. .......|+|||+.++..+. +|...+|  ++.++. .........
T Consensus       251 G~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~-~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~  329 (427)
T PRK02889        251 GRTLAVALSRDGNSQIYTVNADGSGLRRLTQSS-GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSY  329 (427)
T ss_pred             CCEEEEEEccCCCceEEEEECCCCCcEECCCCC-CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCC
Confidence            998874 67788888999998876666554432 34567889999998876654 4555555  444444 222223334


Q ss_pred             eeEEEEcCCCCEEEEEeCCC---eEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCC---cEEEEecC
Q 042434          396 ITSLSVSVDCKNFIVNLNSQ---EIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENS---QIYIWNRR  469 (517)
Q Consensus       396 i~~~~~s~~~~~l~~~~~d~---~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~iwd~~  469 (517)
                      .....|+|+|++++..+.++   .|.+||+.++..  ..+.... .   .....|+|||+.|+.++.++   .+++.++ 
T Consensus       330 ~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~--~~lt~~~-~---~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-  402 (427)
T PRK02889        330 NTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV--TALTDTT-R---DESPSFAPNGRYILYATQQGGRSVLAAVSS-  402 (427)
T ss_pred             cCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe--EEccCCC-C---ccCceECCCCCEEEEEEecCCCEEEEEEEC-
Confidence            45688999999998877654   699999976522  2222211 1   13445699999988877554   4666676 


Q ss_pred             CCceeEEecCCCCCeeEEEecCC
Q 042434          470 NSKPIEILSGHSMTVNCVSWNPK  492 (517)
Q Consensus       470 ~~~~~~~~~~h~~~v~~v~~~~~  492 (517)
                      +|+....+..+.+.+...+|+|-
T Consensus       403 ~g~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        403 DGRIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             CCCceEEeecCCCCCCCCccCCC
Confidence            46667777777788889999874

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=5.3e-15  Score=136.19  Aligned_cols=280  Identities=14%  Similarity=0.177  Sum_probs=186.5

Q ss_pred             cccCcEEEEEECCCCCEE-EEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCC
Q 042434          220 EHKNEVWFVQFSNNGEYL-ASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVET  298 (517)
Q Consensus       220 ~h~~~v~~~~~s~~~~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~  298 (517)
                      +|...-+.+..+|||+|+ |||..--.|++||+..-   .+...-.-....|.-.-.+.|-..++.-..|.+|-+... .
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanL---SLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak-~  124 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANL---SLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK-Y  124 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccc---eeeeeecccccceeEEEeccchhhheEeecCceeeehhh-c
Confidence            367777889999999986 56667889999999532   222211112345665666666666777777887776543 2


Q ss_pred             CcEEEEeCCCCCceEEEEEeC-CCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcE
Q 042434          299 GICKHTFGDHGFIVSSCAWFP-DSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDI  377 (517)
Q Consensus       299 ~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  377 (517)
                      |... .+. -...-..++++. ...+++.|+. ..  ||.+++.............+.+.++.+++-..+|++|+.+|.|
T Consensus       125 G~hy-~~R-IP~~GRDm~y~~~scDly~~gsg-~e--vYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~V  199 (703)
T KOG2321|consen  125 GRHY-RTR-IPKFGRDMKYHKPSCDLYLVGSG-SE--VYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVV  199 (703)
T ss_pred             Ceee-eee-cCcCCccccccCCCccEEEeecC-cc--eEEEEccccccccccccccccceeeeecCccceEEecccCceE
Confidence            2211 111 111223455543 3334444443 33  9999988554433333334689999999999999999999999


Q ss_pred             EEEECCCce-EEee-------cc-----CCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEe
Q 042434          378 RILNLGTYA-ERVI-------SE-----EHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRS  444 (517)
Q Consensus       378 ~i~d~~~~~-~~~~-------~~-----~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~  444 (517)
                      ..||.+... ....       .+     ...|+++.|+.+|-.+++|+.+|.+.+||++..  .+.....|.........
T Consensus       200 EfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~--~pl~~kdh~~e~pi~~l  277 (703)
T KOG2321|consen  200 EFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS--KPLLVKDHGYELPIKKL  277 (703)
T ss_pred             EEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccC--CceeecccCCccceeee
Confidence            999998765 1111       11     124999999999999999999999999999985  33334444443333333


Q ss_pred             ecCCCC-CcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434          445 CFGGLD-GTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ  513 (517)
Q Consensus       445 ~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~  513 (517)
                      .+...+ ++.+++ .....++|||-.+|++...+.. ...++.+|+-|++ .+++++-.++.+..|=+..
T Consensus       278 ~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~s-Gm~f~Ane~~~m~~yyiP~  344 (703)
T KOG2321|consen  278 DWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIEP-TSDLNDFCFVPGS-GMFFTANESSKMHTYYIPS  344 (703)
T ss_pred             cccccCCCceEEe-cchHHhhhcccccCCceeeccc-cCCcCceeeecCC-ceEEEecCCCcceeEEccc
Confidence            222223 344444 4457899999999999988874 5569999999998 6899998888777665443

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.71  E-value=8.4e-16  Score=140.15  Aligned_cols=201  Identities=15%  Similarity=0.223  Sum_probs=157.6

Q ss_pred             cCCCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCC
Q 042434          200 YEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDD  279 (517)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~  279 (517)
                      +.|+...+-.-..+..+.+..|.+.|.|-.|+|||.-|++++.||.|++|.-. +   ....++.....+|.|++|.|+.
T Consensus        82 s~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-G---MLRStl~Q~~~~v~c~~W~p~S  157 (737)
T KOG1524|consen   82 SNDGRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-G---MLRSTVVQNEESIRCARWAPNS  157 (737)
T ss_pred             cCCceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-c---hHHHHHhhcCceeEEEEECCCC
Confidence            33444444555567778889999999999999999999999999999999853 2   2334455567899999999998


Q ss_pred             CeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEE
Q 042434          280 TKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDL  359 (517)
Q Consensus       280 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~  359 (517)
                      +.++.+. .+.+.|=.+.-...+-..+.|++-|.++.|++..+.+++|+.|-.  ..+||..|..+..-..+. -+|+++
T Consensus       158 ~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~k--fKvWD~~G~~Lf~S~~~e-y~ITSv  233 (737)
T KOG1524|consen  158 NSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFR--FKIWDAQGANLFTSAAEE-YAITSV  233 (737)
T ss_pred             CceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCcee--EEeecccCcccccCChhc-cceeee
Confidence            8777654 346777677666667788899999999999999999999999987  899999988776655554 489999


Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEE
Q 042434          360 AVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHM  419 (517)
Q Consensus       360 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~  419 (517)
                      +|+|+ +.++.++. ++++         ......+.|..++||+||..+++|+..|.+.+
T Consensus       234 a~npd-~~~~v~S~-nt~R---------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  234 AFNPE-KDYLLWSY-NTAR---------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             eeccc-cceeeeee-eeee---------ecCCCccceEEEEEcCCCceeeccccCceEEE
Confidence            99999 55555543 2333         12234567999999999999999999987654

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=1.3e-14  Score=141.69  Aligned_cols=235  Identities=14%  Similarity=0.123  Sum_probs=164.2

Q ss_pred             CcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeC---CCeEEEEECCCCcEEEEeCCCCCceEEEEEeCC
Q 042434          244 CSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGN---AEVLKLWDVETGICKHTFGDHGFIVSSCAWFPD  320 (517)
Q Consensus       244 g~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~  320 (517)
                      ..|.+||.....    ...+..|...+.+.+|+|||+.|+..+.   +..|.+||+.+++.. .+..+...+.+.+|+||
T Consensus       182 ~~l~~~d~dg~~----~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPD  256 (435)
T PRK05137        182 KRLAIMDQDGAN----VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPD  256 (435)
T ss_pred             eEEEEECCCCCC----cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCC
Confidence            367788874332    2345568889999999999999988764   468999999888754 34455667788999999


Q ss_pred             CCeEE-EeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeC-CC--cEEEEECCCce-EEeeccCCC
Q 042434          321 SKRLV-CGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLS-DK--DIRILNLGTYA-ERVISEEHP  395 (517)
Q Consensus       321 ~~~l~-~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~-~~~~~~~~~  395 (517)
                      |+.|+ +.+.++...||.++..+.....+.... .......|+|||+.++..+. +|  .|+++|+.++. .........
T Consensus       257 G~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~-~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~  335 (435)
T PRK05137        257 GRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSP-AIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGR  335 (435)
T ss_pred             CCEEEEEEecCCCceEEEEECCCCceEEccCCC-CccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCc
Confidence            99875 556677777999999887776655433 34667899999998887764 33  68888987765 333333455


Q ss_pred             eeEEEEcCCCCEEEEEeCC---CeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCC------CcEEEE
Q 042434          396 ITSLSVSVDCKNFIVNLNS---QEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSEN------SQIYIW  466 (517)
Q Consensus       396 i~~~~~s~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------g~i~iw  466 (517)
                      +....|+|+|+.++....+   ..|.+||+.+...  ..+.. ..   ......|+|||+.|+..+.+      ..++++
T Consensus       336 ~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~--~~lt~-~~---~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~  409 (435)
T PRK05137        336 YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE--RILTS-GF---LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTV  409 (435)
T ss_pred             ccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce--EeccC-CC---CCCCCeECCCCCEEEEEEccCCCCCcceEEEE
Confidence            6778999999999887653   3688888765422  22221 11   13345569999988775543      258888


Q ss_pred             ecCCCceeEEecCCCCCeeEEEecCC
Q 042434          467 NRRNSKPIEILSGHSMTVNCVSWNPK  492 (517)
Q Consensus       467 d~~~~~~~~~~~~h~~~v~~v~~~~~  492 (517)
                      |+..+.. ..+. ..+.+...+|+|-
T Consensus       410 dl~g~~~-~~l~-~~~~~~~p~Wsp~  433 (435)
T PRK05137        410 DLTGRNE-REVP-TPGDASDPAWSPL  433 (435)
T ss_pred             ECCCCce-EEcc-CCCCccCcccCCC
Confidence            8876554 4554 3455778888874

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=1e-14  Score=141.41  Aligned_cols=218  Identities=17%  Similarity=0.218  Sum_probs=152.3

Q ss_pred             CcccEEEeccccCcEEEEEECCCCCEEEEee---CCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEE-e
Q 042434          211 PTETVQILTEHKNEVWFVQFSNNGEYLASSS---SDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTC-G  286 (517)
Q Consensus       211 ~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~---~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~  286 (517)
                      .+...+.+..+...+.+.+|||||+.|+..+   .+..+.+|++.++.. ..+..+   .+.+...+|+|||+.|+.. +
T Consensus       187 dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~-~~l~~~---~~~~~~~~~SPDG~~La~~~~  262 (429)
T PRK03629        187 DGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASF---PRHNGAPAFSPDGSKLAFALS  262 (429)
T ss_pred             CCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe-EEccCC---CCCcCCeEECCCCCEEEEEEc
Confidence            3444455666778999999999999998754   245789999876532 222233   3345568999999988865 4


Q ss_pred             CCC--eEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeC-CCceeEEEEeCCCCeeEeeeCcCCCceEEEEEcc
Q 042434          287 NAE--VLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSS-DTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTP  363 (517)
Q Consensus       287 ~dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~  363 (517)
                      .+|  .|.+||+.+++.... ..+...+....|+|||+.|+..+. ++...+|.++..+.....+.... .......|+|
T Consensus       263 ~~g~~~I~~~d~~tg~~~~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~-~~~~~~~~Sp  340 (429)
T PRK03629        263 KTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEG-SQNQDADVSS  340 (429)
T ss_pred             CCCCcEEEEEECCCCCEEEc-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCC-CCccCEEECC
Confidence            454  589999988876544 344556788999999998877765 45667999998876555543322 2456789999


Q ss_pred             CCCEEEEEeCC---CcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCCe---EEEEEcCCCCccceEEeCcc
Q 042434          364 DGENLISVLSD---KDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQE---IHMWDVAGKWEKPFKYTGHS  436 (517)
Q Consensus       364 ~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~---i~~~d~~~~~~~~~~~~~~~  436 (517)
                      ||+.++..+.+   ..|.+||+.++...............|+|||+.++.++.++.   +.++++.+.  ....+.++.
T Consensus       341 DG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~--~~~~l~~~~  417 (429)
T PRK03629        341 DGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR--FKARLPATD  417 (429)
T ss_pred             CCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCC--CeEECccCC
Confidence            99998876654   358889998877444433334557889999999999887764   667777543  334444443

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=4.1e-15  Score=132.27  Aligned_cols=197  Identities=20%  Similarity=0.244  Sum_probs=141.9

Q ss_pred             EEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce----EE
Q 042434          313 SSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA----ER  388 (517)
Q Consensus       313 ~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~  388 (517)
                      .+++|+++|..+++++.||.++||.|-. ...+.....++ ..|.++.|+|||+.+++.+.| ..+||+.+++.    ..
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps-~~t~l~e~~~~-~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t  224 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPS-MLTILEEIAHH-AEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT  224 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCc-chhhhhhHhhc-CccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence            6799999999999999999955554432 23333333333 589999999999999999999 89999999885    11


Q ss_pred             eeccCCCeeEEEEcCCC---CEE--EEEeCCCeEEEEEcCCCCc-cceEEeCcccCceEEEeecCCCCCcEEEEecCCCc
Q 042434          389 VISEEHPITSLSVSVDC---KNF--IVNLNSQEIHMWDVAGKWE-KPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQ  462 (517)
Q Consensus       389 ~~~~~~~i~~~~~s~~~---~~l--~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~  462 (517)
                      ..........+.|+.++   .++  +.....+.|..||+..... ..............+.++..+++|++++.|+.||.
T Consensus       225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGs  304 (398)
T KOG0771|consen  225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGS  304 (398)
T ss_pred             CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCc
Confidence            13334456677787776   332  2333456677777643211 11111111112224777788999999999999999


Q ss_pred             EEEEecCCCceeEEec-CCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434          463 IYIWNRRNSKPIEILS-GHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ  513 (517)
Q Consensus       463 i~iwd~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~  513 (517)
                      |-|++..+-+.+...+ .|...|+.+.|+|+. +.+++.+.|....+..+.-
T Consensus       305 Vai~~~~~lq~~~~vk~aH~~~VT~ltF~Pds-r~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  305 VAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDS-RYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             EEEEEeceeeeeEeehhhheeeeeeEEEcCCc-CcccccccCCceeEEEEee
Confidence            9999999888777664 699999999999998 7899999998888876654

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=7.1e-15  Score=143.31  Aligned_cols=235  Identities=17%  Similarity=0.163  Sum_probs=163.2

Q ss_pred             CcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCC---CeEEEEECCCCcEEEEeCCCCCceEEEEEeCC
Q 042434          244 CSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNA---EVLKLWDVETGICKHTFGDHGFIVSSCAWFPD  320 (517)
Q Consensus       244 g~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~  320 (517)
                      ..|.+||......    ..+..+...+.+.+|+|||+.|+.++.+   ..|.+||+.+++.... ........+..|+||
T Consensus       184 ~~l~i~D~~g~~~----~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l-~~~~g~~~~~~~SpD  258 (433)
T PRK04922        184 YALQVADSDGYNP----QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV-ASFRGINGAPSFSPD  258 (433)
T ss_pred             EEEEEECCCCCCc----eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe-ccCCCCccCceECCC
Confidence            3588888753321    3455677889999999999999987643   4799999988876433 334445567899999


Q ss_pred             CCeEE-EeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeC-CCc--EEEEECCCceE-EeeccCCC
Q 042434          321 SKRLV-CGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLS-DKD--IRILNLGTYAE-RVISEEHP  395 (517)
Q Consensus       321 ~~~l~-~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~--i~i~d~~~~~~-~~~~~~~~  395 (517)
                      |+.++ +.+.+|...|+.|+..+.....+.... ......+|+|||+.++.++. +|.  |+++|+.++.. ........
T Consensus       259 G~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~-~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~  337 (433)
T PRK04922        259 GRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHF-GIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNY  337 (433)
T ss_pred             CCEEEEEEeCCCCceEEEEECCCCCeEECccCC-CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCC
Confidence            99776 456677667999999877766655433 24567899999998887764 444  77778776652 23333344


Q ss_pred             eeEEEEcCCCCEEEEEeCCC---eEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCC---CcEEEEecC
Q 042434          396 ITSLSVSVDCKNFIVNLNSQ---EIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSEN---SQIYIWNRR  469 (517)
Q Consensus       396 i~~~~~s~~~~~l~~~~~d~---~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~iwd~~  469 (517)
                      ....+|+|+|++++..+.++   .|.+||+.++...  .+... ..   .....|+|||++++..+.+   +.|+++++.
T Consensus       338 ~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~--~Lt~~-~~---~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~  411 (433)
T PRK04922        338 NARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR--TLTPG-SL---DESPSFAPNGSMVLYATREGGRGVLAAVSTD  411 (433)
T ss_pred             ccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE--ECCCC-CC---CCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence            55789999999998876543   6999998765222  22211 11   1233569999988877653   468888885


Q ss_pred             CCceeEEecCCCCCeeEEEecC
Q 042434          470 NSKPIEILSGHSMTVNCVSWNP  491 (517)
Q Consensus       470 ~~~~~~~~~~h~~~v~~v~~~~  491 (517)
                       +.....+..+.+.+...+|+|
T Consensus       412 -g~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        412 -GRVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             -CCceEEcccCCCCCCCCccCC
Confidence             555666766677888889987

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.71  E-value=2.1e-14  Score=125.51  Aligned_cols=235  Identities=14%  Similarity=0.190  Sum_probs=166.3

Q ss_pred             CCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeE
Q 042434          267 QNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIK  346 (517)
Q Consensus       267 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~  346 (517)
                      ...+..+.|..+...|..|+.|| .++|+.+..............|..+-|+  ..+++..+.+..-++.+++...+...
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~I   81 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTI   81 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCceE
Confidence            34567777999998899998887 5777766544322222334455556665  44666666554444556665543332


Q ss_pred             -eeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEee----ccCCCeeEEEEcCCCCEEEEEe--CCCeEE
Q 042434          347 -AWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVI----SEEHPITSLSVSVDCKNFIVNL--NSQEIH  418 (517)
Q Consensus       347 -~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~----~~~~~i~~~~~s~~~~~l~~~~--~d~~i~  418 (517)
                       ...-.+  .|.++.++.+  .++++-.+. |+|||+++.+ ...+    .+...+.++++++.+.+++.-+  ..|.|.
T Consensus        82 Ce~~fpt--~IL~VrmNr~--RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~  156 (391)
T KOG2110|consen   82 CEIFFPT--SILAVRMNRK--RLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV  156 (391)
T ss_pred             EEEecCC--ceEEEEEccc--eEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence             222222  5777777643  566655544 9999999987 2221    2333455666666667887654  478999


Q ss_pred             EEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCc-EEEEecCCCceeEEecCC--CCCeeEEEecCCCCc
Q 042434          419 MWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQ-IYIWNRRNSKPIEILSGH--SMTVNCVSWNPKRPK  495 (517)
Q Consensus       419 ~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~h--~~~v~~v~~~~~~~~  495 (517)
                      +||+.+. ..+..+..|...   +.+++++++|.+||++++.|+ |||+.+.+|+.+..|.--  ...|.+++|+|++ .
T Consensus       157 l~d~~nl-~~v~~I~aH~~~---lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds-~  231 (391)
T KOG2110|consen  157 LFDTINL-QPVNTINAHKGP---LAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDS-Q  231 (391)
T ss_pred             EEEcccc-eeeeEEEecCCc---eeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCC-C
Confidence            9999877 777788888876   777888999999999999996 799999999999998743  3468899999999 7


Q ss_pred             EEEEeeCCCcEEEeCCCCC
Q 042434          496 MLASASDDHTIRIWGPCQS  514 (517)
Q Consensus       496 ~l~s~~~dg~v~iw~~~~~  514 (517)
                      +|++.|..++|+||.+...
T Consensus       232 ~L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  232 FLAASSNTETVHIFKLEKV  250 (391)
T ss_pred             eEEEecCCCeEEEEEeccc
Confidence            9999999999999998753

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.70  E-value=7e-17  Score=144.66  Aligned_cols=230  Identities=14%  Similarity=0.201  Sum_probs=192.5

Q ss_pred             CCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEe
Q 042434          268 NPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKA  347 (517)
Q Consensus       268 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~  347 (517)
                      ..-..+.++.+|+.++.|+..|.|..+|..+++....+ .-...|.++.|..+..+||++-..-   +++||-.|..+..
T Consensus       130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei-~v~Etv~Dv~~LHneq~~AVAQK~y---~yvYD~~GtElHC  205 (545)
T KOG1272|consen  130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEI-NVMETVRDVTFLHNEQFFAVAQKKY---VYVYDNNGTELHC  205 (545)
T ss_pred             cCCeeeeecCCccEEEecCCccceeeeecccceeeeee-ehhhhhhhhhhhcchHHHHhhhhce---EEEecCCCcEEee
Confidence            34567899999999999999999999999999988777 4456788999998888888775544   9999999988888


Q ss_pred             eeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 042434          348 WRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK  425 (517)
Q Consensus       348 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~  425 (517)
                      +..+.  .|..+.|.|..-+|++++..|.++.-|+.+++  .......+.+..++-+|-+..+-+|...|+|.+|.....
T Consensus       206 lk~~~--~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk  283 (545)
T KOG1272|consen  206 LKRHI--RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK  283 (545)
T ss_pred             hhhcC--chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc
Confidence            77665  79999999999999999999999999999988  444556678888999999999999999999999998776


Q ss_pred             CccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCc
Q 042434          426 WEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHT  505 (517)
Q Consensus       426 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~  505 (517)
                       .+...+..|..+   ++++++.++|+|++|.+.|..++|||+++...+.++.. ..+...+++|..|   ++++|....
T Consensus       284 -ePLvKiLcH~g~---V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg---lLA~~~G~~  355 (545)
T KOG1272|consen  284 -EPLVKILCHRGP---VSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG---LLALSYGDH  355 (545)
T ss_pred             -chHHHHHhcCCC---cceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc---ceeeecCCe
Confidence             666666677776   55666699999999999999999999999887777664 4567889999877   444555667


Q ss_pred             EEEeCC
Q 042434          506 IRIWGP  511 (517)
Q Consensus       506 v~iw~~  511 (517)
                      |.||.=
T Consensus       356 v~iw~d  361 (545)
T KOG1272|consen  356 VQIWKD  361 (545)
T ss_pred             eeeehh
Confidence            999963

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.70  E-value=1.4e-14  Score=141.42  Aligned_cols=210  Identities=14%  Similarity=0.190  Sum_probs=154.9

Q ss_pred             CCcccEEEeccccCcEEEEEECCCCCEEEEeeC---CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEE-EE
Q 042434          210 IPTETVQILTEHKNEVWFVQFSNNGEYLASSSS---DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLL-TC  285 (517)
Q Consensus       210 ~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~---dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~  285 (517)
                      ..+...+.+..|...+.+.+|||||+.|+..+.   +..|.+||+.++..    ..+..+.+.+.+.+|+|||+.|+ +.
T Consensus       189 ~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~----~~l~~~~g~~~~~~~SPDG~~la~~~  264 (435)
T PRK05137        189 QDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR----ELVGNFPGMTFAPRFSPDGRKVVMSL  264 (435)
T ss_pred             CCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE----EEeecCCCcccCcEECCCCCEEEEEE
Confidence            455666778889999999999999999988763   46899999976533    23445666788899999998876 44


Q ss_pred             eCCC--eEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEee-CCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEc
Q 042434          286 GNAE--VLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGS-SDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVT  362 (517)
Q Consensus       286 ~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~  362 (517)
                      +.++  .|.+||+.++... .+..+........|+|||+.++..+ .+|...+|.++..+.....+.... ..+....|+
T Consensus       265 ~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~-~~~~~~~~S  342 (435)
T PRK05137        265 SQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGG-GRYSTPVWS  342 (435)
T ss_pred             ecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCC-CcccCeEEC
Confidence            5555  4777898887654 4555666677899999999888776 456566999998877666554432 346678899


Q ss_pred             cCCCEEEEEeCC---CcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCC------CeEEEEEcCCC
Q 042434          363 PDGENLISVLSD---KDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNS------QEIHMWDVAGK  425 (517)
Q Consensus       363 ~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------~~i~~~d~~~~  425 (517)
                      |+|+.++....+   ..|.+||+.+...........+....|+|||+.++..+.+      ..++++|+.+.
T Consensus       343 pdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~  414 (435)
T PRK05137        343 PRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR  414 (435)
T ss_pred             CCCCEEEEEEcCCCceEEEEEECCCCceEeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence            999999877653   3688899866554444444467789999999998876543      25777787654

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.69  E-value=1.3e-14  Score=126.79  Aligned_cols=249  Identities=15%  Similarity=0.118  Sum_probs=159.3

Q ss_pred             cCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEE--eCCCeEEEEECCCC
Q 042434          222 KNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTC--GNAEVLKLWDVETG  299 (517)
Q Consensus       222 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~--~~dg~i~iwd~~~~  299 (517)
                      ..+|.++.++.+  .|+++-.+ .|+|||+.+-.-+..+.+...+...+.++++++.+.++|.=  ...|.|.+||+.+-
T Consensus        87 pt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl  163 (391)
T KOG2110|consen   87 PTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL  163 (391)
T ss_pred             CCceEEEEEccc--eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc
Confidence            456777777554  56665554 59999996543333333334566668788888788888853  34689999999999


Q ss_pred             cEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCC-CCeeEeeeCcC-CCceEEEEEccCCCEEEEEeCCCcE
Q 042434          300 ICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD-GNEIKAWRGTR-IPKVLDLAVTPDGENLISVLSDKDI  377 (517)
Q Consensus       300 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~-~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i  377 (517)
                      +.+..+..|++.+.+++|+++|.+||+++..|+| |.++... +..+..++.+. ...|.+++|+|++.+|.+.+..++|
T Consensus       164 ~~v~~I~aH~~~lAalafs~~G~llATASeKGTV-IRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTV  242 (391)
T KOG2110|consen  164 QPVNTINAHKGPLAALAFSPDGTLLATASEKGTV-IRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETV  242 (391)
T ss_pred             eeeeEEEecCCceeEEEECCCCCEEEEeccCceE-EEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeE
Confidence            9999999999999999999999999999999997 7777765 56667766544 3468899999999999999999999


Q ss_pred             EEEECCCceEEeeccCCCeeEEEE-cCCCCEEEEEeC-CCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEE
Q 042434          378 RILNLGTYAERVISEEHPITSLSV-SVDCKNFIVNLN-SQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIA  455 (517)
Q Consensus       378 ~i~d~~~~~~~~~~~~~~i~~~~~-s~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  455 (517)
                      ++|.+.........  .+-....| .+-.+.+ ++.. .+.-.+||....   .........+...+....-.+....+.
T Consensus       243 HiFKL~~~~~~~~~--~p~~~~~~~~~~sk~~-~sylps~V~~~~~~~R~---FAt~~l~~s~~~~~~~l~~~~~~~~v~  316 (391)
T KOG2110|consen  243 HIFKLEKVSNNPPE--SPTAGTSWFGKVSKAA-TSYLPSQVSSVLDQSRK---FATAKLPESGRKNICSLSSIQKIPRVL  316 (391)
T ss_pred             EEEEecccccCCCC--CCCCCCcccchhhhhh-hhhcchhhhhhhhhccc---eeEEEccCCCccceEEeeccCCCCEEE
Confidence            99998765411111  00000000 0000000 0000 111122443221   111111111111233333235778899


Q ss_pred             EecCCCcEEEEecC--CCceeEEecCC
Q 042434          456 SGSENSQIYIWNRR--NSKPIEILSGH  480 (517)
Q Consensus       456 ~~~~dg~i~iwd~~--~~~~~~~~~~h  480 (517)
                      .++.||.++.|.+.  +|.....++.|
T Consensus       317 vas~dG~~y~y~l~~~~gGec~lik~h  343 (391)
T KOG2110|consen  317 VASYDGHLYSYRLPPKEGGECALIKRH  343 (391)
T ss_pred             EEEcCCeEEEEEcCCCCCceeEEEEee
Confidence            99999999999764  34444455444

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.69  E-value=1.6e-14  Score=140.88  Aligned_cols=210  Identities=16%  Similarity=0.180  Sum_probs=150.9

Q ss_pred             CCcccEEEeccccCcEEEEEECCCCCEEEEeeC---CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEE-EE
Q 042434          210 IPTETVQILTEHKNEVWFVQFSNNGEYLASSSS---DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLL-TC  285 (517)
Q Consensus       210 ~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~---dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~  285 (517)
                      ..+...+.+..|...+.+.+|+|||+.|+.++.   +..|.+|++.++.. .   .+..+.+...+.+|+|||+.|+ +.
T Consensus       191 ~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~-~---~l~~~~g~~~~~~~SpDG~~l~~~~  266 (433)
T PRK04922        191 SDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR-E---LVASFRGINGAPSFSPDGRRLALTL  266 (433)
T ss_pred             CCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE-E---EeccCCCCccCceECCCCCEEEEEE
Confidence            345556677778889999999999999998764   34699999976543 2   2233444556789999998776 44


Q ss_pred             eCCC--eEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeC-CCceeEEEEeCCCCeeEeeeCcCCCceEEEEEc
Q 042434          286 GNAE--VLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSS-DTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVT  362 (517)
Q Consensus       286 ~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~  362 (517)
                      +.+|  .|.+||+.+++.. .+..+.......+|+|||+.++.++. +|...+|.++..+.....+.... ......+|+
T Consensus       267 s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g-~~~~~~~~S  344 (433)
T PRK04922        267 SRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQG-NYNARASVS  344 (433)
T ss_pred             eCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCC-CCccCEEEC
Confidence            5555  6999999888754 44455555677899999998887764 55667999998765554443222 234568999


Q ss_pred             cCCCEEEEEeCCC---cEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCC---CeEEEEEcCCC
Q 042434          363 PDGENLISVLSDK---DIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNS---QEIHMWDVAGK  425 (517)
Q Consensus       363 ~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---~~i~~~d~~~~  425 (517)
                      |+|+.++..+.++   .|.+||+.++......+........|+|||+.++..+.+   +.+.++++.+.
T Consensus       345 pDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~  413 (433)
T PRK04922        345 PDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR  413 (433)
T ss_pred             CCCCEEEEEECCCCceeEEEEECCCCCeEECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence            9999988765443   699999988775444444455678999999998877653   35777777543

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.68  E-value=5.4e-15  Score=135.10  Aligned_cols=271  Identities=15%  Similarity=0.185  Sum_probs=174.2

Q ss_pred             cEEEEEECCCCCEEEEeeCCCcEEEEEecCCCe--eeEEEEeccCCCCEEEEEE-----CCCCCeEEEEeCCCeEEEEEC
Q 042434          224 EVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSK--LTLKHTLRSHQNPVSFVAW-----SPDDTKLLTCGNAEVLKLWDV  296 (517)
Q Consensus       224 ~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~--~~~~~~~~~h~~~v~~l~~-----s~~~~~l~s~~~dg~i~iwd~  296 (517)
                      .+....++-.|++|+..-. ..+.+|+...+..  ....+.+... ...+|-+|     .|++--++.|-.-|.+.+.|.
T Consensus       125 ~~~~~~~~~~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~g-t~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp  202 (636)
T KOG2394|consen  125 IVTNTNQSGKGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYKG-TSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDP  202 (636)
T ss_pred             ceeeccccCCCCEEEEecC-CeEEEEEccCcchhccchhhhcccC-CCCceecccccccCCCCcceEEeeccCceEEecc
Confidence            4445555567777776533 4688898863221  1111111111 22334444     346667888888899999887


Q ss_pred             CCCcEEEEeC----CCCCceEEEEEeCCC-CeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEE
Q 042434          297 ETGICKHTFG----DHGFIVSSCAWFPDS-KRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISV  371 (517)
Q Consensus       297 ~~~~~~~~~~----~~~~~v~~i~~~~~~-~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  371 (517)
                      ...+..+.+.    ..+..|+|+.|-|.+ ..++++-.+|.  ++.+|..-.      ...  .-.+....+++..+...
T Consensus       203 ~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGn--lyly~~~~~------~~~--t~p~~~~~k~~~~f~i~  272 (636)
T KOG2394|consen  203 INFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGN--LYLYDKEIV------CGA--TAPSYQALKDGDQFAIL  272 (636)
T ss_pred             hhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCc--eEEeecccc------ccC--CCCcccccCCCCeeEEe
Confidence            6533222221    235789999999954 46666777888  887775210      000  01112223344444332


Q ss_pred             eCCCcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCC
Q 042434          372 LSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDG  451 (517)
Q Consensus       372 ~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~  451 (517)
                      ..-+..   + +............|..++|+|||++|++.+.||.++|||..+. ...-.+...-.   .+.|++|||||
T Consensus       273 t~ksk~---~-rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~-eLlg~mkSYFG---GLLCvcWSPDG  344 (636)
T KOG2394|consen  273 TSKSKK---T-RNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ-ELLGVMKSYFG---GLLCVCWSPDG  344 (636)
T ss_pred             eeeccc---c-CCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHH-HHHHHHHhhcc---ceEEEEEcCCc
Confidence            221100   0 0111122223448999999999999999999999999998764 22222222222   26678889999


Q ss_pred             cEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCC-------------------------------C-------
Q 042434          452 TFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPK-------------------------------R-------  493 (517)
Q Consensus       452 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~-------------------------------~-------  493 (517)
                      +||++|++|--|.||.+...+.+..-++|.+.|+.|+|.|-                               +       
T Consensus       345 KyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~  424 (636)
T KOG2394|consen  345 KYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPL  424 (636)
T ss_pred             cEEEecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcc
Confidence            99999999999999999999999999999999999999830                               0       


Q ss_pred             ---------CcEEEEeeCCCcEEEeCCCCC
Q 042434          494 ---------PKMLASASDDHTIRIWGPCQS  514 (517)
Q Consensus       494 ---------~~~l~s~~~dg~v~iw~~~~~  514 (517)
                               ...+.+.|.|-.+.+||+...
T Consensus       425 s~~~~~~~v~YRfGSVGqDTqlcLWDlteD  454 (636)
T KOG2394|consen  425 SSFNRINSVTYRFGSVGQDTQLCLWDLTED  454 (636)
T ss_pred             cccccccceEEEeecccccceEEEEecchh
Confidence                     146788899999999998653

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.67  E-value=3.4e-14  Score=121.85  Aligned_cols=232  Identities=16%  Similarity=0.231  Sum_probs=172.7

Q ss_pred             CCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc---EEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeC-C
Q 042434          266 HQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI---CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDC-D  341 (517)
Q Consensus       266 h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~-~  341 (517)
                      -..+|+|.+|++|+..+|.+.....|.||.....+   ..++++.|...|++++|+|..+.|++++.|..  -|+|.. .
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drn--ayVw~~~~   86 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRN--AYVWTQPS   86 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCC--ccccccCC
Confidence            46789999999999999999999999999886654   67788999999999999999999999999999  777777 3


Q ss_pred             CCe----eEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce------EEeeccCCCeeEEEEcCCCCEEEEE
Q 042434          342 GNE----IKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA------ERVISEEHPITSLSVSVDCKNFIVN  411 (517)
Q Consensus       342 ~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~i~~~~~s~~~~~l~~~  411 (517)
                      +..    +...+.  ....+++.|+|.++.+++|+....|.||-.+...      .........|++++|+|++-.+++|
T Consensus        87 ~~~WkptlvLlRi--NrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG  164 (361)
T KOG1523|consen   87 GGTWKPTLVLLRI--NRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG  164 (361)
T ss_pred             CCeeccceeEEEe--ccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence            322    222222  2379999999999999999999999999887655      2334556789999999999999999


Q ss_pred             eCCCeEEEEEcC-----CC-----CccceEE----eCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCc-eeEE
Q 042434          412 LNSQEIHMWDVA-----GK-----WEKPFKY----TGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSK-PIEI  476 (517)
Q Consensus       412 ~~d~~i~~~d~~-----~~-----~~~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~  476 (517)
                      +.|+..+++..-     ..     +.....|    ........-+....|+|+|..|+-.+.|+.+.+-|..... .+..
T Consensus       165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~  244 (361)
T KOG1523|consen  165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQS  244 (361)
T ss_pred             ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccc
Confidence            999999998751     11     0000000    0000112235556679999999999999999999987664 3333


Q ss_pred             ecCCCCCeeEEEecCCCCcEEEEeeCC
Q 042434          477 LSGHSMTVNCVSWNPKRPKMLASASDD  503 (517)
Q Consensus       477 ~~~h~~~v~~v~~~~~~~~~l~s~~~d  503 (517)
                      +..-.-+..++.|-.+.  .++.++.|
T Consensus       245 ~~~~~lP~ls~~~ise~--~vv~ag~~  269 (361)
T KOG1523|consen  245 VATAQLPLLSVSWISEN--SVVAAGYD  269 (361)
T ss_pred             hhhccCCceeeEeecCC--ceeecCCC
Confidence            33333677777776543  34455544

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=3.3e-14  Score=138.15  Aligned_cols=209  Identities=14%  Similarity=0.148  Sum_probs=146.4

Q ss_pred             CCcccEEEeccccCcEEEEEECCCCCEEEEeeCC---CcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEE-EE
Q 042434          210 IPTETVQILTEHKNEVWFVQFSNNGEYLASSSSD---CSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLL-TC  285 (517)
Q Consensus       210 ~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d---g~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~  285 (517)
                      ..+...+.+..+...+.+.+|||||+.|+..+.+   ..|.+||+.++... .   +....+.+.+.+|+|||+.|+ +.
T Consensus       183 ~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~-~---l~~~~g~~~~~~~SPDG~~la~~~  258 (427)
T PRK02889        183 ADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR-V---VANFKGSNSAPAWSPDGRTLAVAL  258 (427)
T ss_pred             CCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE-E---eecCCCCccceEECCCCCEEEEEE
Confidence            3455556677788899999999999999887643   35999999766432 2   223345567899999999887 45


Q ss_pred             eCCCeEEEE--ECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeC-CCceeEEEEeCCCCeeEeeeCcCCCceEEEEEc
Q 042434          286 GNAEVLKLW--DVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSS-DTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVT  362 (517)
Q Consensus       286 ~~dg~i~iw--d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~  362 (517)
                      +.+|...||  |+.++. ...+..+........|+|||+.++..+. +|...+|..+..+.......... .......|+
T Consensus       259 ~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g-~~~~~~~~S  336 (427)
T PRK02889        259 SRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTG-SYNTSPRIS  336 (427)
T ss_pred             ccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCC-CCcCceEEC
Confidence            677766665  454444 4455555556677899999998886654 46667888887765544333221 234467899


Q ss_pred             cCCCEEEEEeCCC---cEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCC---eEEEEEcCC
Q 042434          363 PDGENLISVLSDK---DIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQ---EIHMWDVAG  424 (517)
Q Consensus       363 ~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~---~i~~~d~~~  424 (517)
                      |+|++++..+.++   .|.+||+.++...............|+|||+.++.++.++   .+.+.++.+
T Consensus       337 pDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g  404 (427)
T PRK02889        337 PDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDG  404 (427)
T ss_pred             CCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCCCccCceECCCCCEEEEEEecCCCEEEEEEECCC
Confidence            9999998777654   6999999887744444444457789999999998887644   355555533

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.66  E-value=3.4e-14  Score=122.23  Aligned_cols=307  Identities=15%  Similarity=0.230  Sum_probs=203.1

Q ss_pred             cccCCCCCccccccCCCc-ccccCCCcccEEEeccccCcEEEEEECCCCCEEEE-eeCCCcEEEEEecCCCeeeEEEEec
Q 042434          187 SCQYHNSSVAISLYEDHC-CGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLAS-SSSDCSAIIWKVLEDSKLTLKHTLR  264 (517)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t-~~~dg~i~iw~~~~~~~~~~~~~~~  264 (517)
                      -|.|.+...-++...+.. ...+..+-+..+.+. .-+.|..+.|..|..+++. ...|+.|.+|++...   +....+.
T Consensus        13 ~c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp---ew~ckId   88 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRYRLVIRDSETLQLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP---EWYCKID   88 (447)
T ss_pred             ceeECCCCCeeeeeeeeEEEEeccchhhHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecc---eeEEEec
Confidence            466776666443333333 333443333333332 3577888999998876655 467889999999533   4445666


Q ss_pred             cCCCCEEEEEECCCCCeEE-EEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCc---eeE-----
Q 042434          265 SHQNPVSFVAWSPDDTKLL-TCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTE---KGI-----  335 (517)
Q Consensus       265 ~h~~~v~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~---v~i-----  335 (517)
                      ....++.+++|||||+.|+ +...+-.|.||.+.+.+... ++..+..+..++|+|||++.+.+++-..   +.|     
T Consensus        89 eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~  167 (447)
T KOG4497|consen   89 EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKA  167 (447)
T ss_pred             cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHH
Confidence            7788999999999996555 55668899999998876654 3344566788999999998877664321   001     


Q ss_pred             ----------------EEEeCCCCeeEeeeC---------cCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceE---
Q 042434          336 ----------------FMCDCDGNEIKAWRG---------TRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAE---  387 (517)
Q Consensus       336 ----------------~~~~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---  387 (517)
                                      ..|..++.-+..+..         +..-.+..++|+|.++++++|+.|+.+++.+--+.+.   
T Consensus       168 W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~e  247 (447)
T KOG4497|consen  168 WILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGE  247 (447)
T ss_pred             HHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhh
Confidence                            134455544444332         1122577899999999999999999888765211100   


Q ss_pred             -----------------------------------------------------------E------eeccCCCeeEEEEc
Q 042434          388 -----------------------------------------------------------R------VISEEHPITSLSVS  402 (517)
Q Consensus       388 -----------------------------------------------------------~------~~~~~~~i~~~~~s  402 (517)
                                                                                 .      .......+.-++|+
T Consensus       248 flhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs  327 (447)
T KOG4497|consen  248 FLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFS  327 (447)
T ss_pred             hccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeec
Confidence                                                                       0      00011245678999


Q ss_pred             CCCCEEEEEeC--CCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCC
Q 042434          403 VDCKNFIVNLN--SQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGH  480 (517)
Q Consensus       403 ~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h  480 (517)
                      +|..++++-..  -+.+.+||++.. +....+. ..   ..|+...|+|....++.+.....+++|.......+.. ++.
T Consensus       328 ~Ds~y~aTrnd~~PnalW~Wdlq~l-~l~avLi-Qk---~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~v-P~~  401 (447)
T KOG4497|consen  328 CDSTYAATRNDKYPNALWLWDLQNL-KLHAVLI-QK---HPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGV-PKK  401 (447)
T ss_pred             CCceEEeeecCCCCceEEEEechhh-hhhhhhh-hc---cceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEec-CCC
Confidence            99888887654  357999999764 2211111 11   2267777789888888887788899998775444433 334


Q ss_pred             CCCeeEEEecCCCCcEEEEeeCCCc
Q 042434          481 SMTVNCVSWNPKRPKMLASASDDHT  505 (517)
Q Consensus       481 ~~~v~~v~~~~~~~~~l~s~~~dg~  505 (517)
                      .-.|..+.|+-+| ..++-++.|..
T Consensus       402 GF~i~~l~W~~~g-~~i~l~~kDaf  425 (447)
T KOG4497|consen  402 GFNIQKLQWLQPG-EFIVLCGKDAF  425 (447)
T ss_pred             CceeeeEEecCCC-cEEEEEcCCce
Confidence            5689999999999 68888888864

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.66  E-value=2.4e-14  Score=123.90  Aligned_cols=249  Identities=14%  Similarity=0.191  Sum_probs=179.0

Q ss_pred             CcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCC-CeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCC
Q 042434          211 PTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLED-SKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAE  289 (517)
Q Consensus       211 ~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~-~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg  289 (517)
                      .....+.++||.+.|++...-|...-+++.+.|.+++||--.+. +....+  ......+++++.+.++...|++|-..|
T Consensus        13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI--~~~mP~~~~~~~y~~e~~~L~vg~~ng   90 (404)
T KOG1409|consen   13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSI--YHYMPSPCSAMEYVSESRRLYVGQDNG   90 (404)
T ss_pred             chhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchh--hhhCCCCceEeeeeccceEEEEEEecc
Confidence            34567789999999999999998888999999999999965433 222222  223467899999999999999999999


Q ss_pred             eEEEEECC----CCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCC
Q 042434          290 VLKLWDVE----TGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDG  365 (517)
Q Consensus       290 ~i~iwd~~----~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  365 (517)
                      ++.-+.+.    .....+.+..|...+..+.|+.....+++.+.|..+ .|.....++.+.......  ...++.+.-. 
T Consensus        91 tvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~-~~hc~e~~~~lg~Y~~~~--~~t~~~~d~~-  166 (404)
T KOG1409|consen   91 TVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQF-AWHCTESGNRLGGYNFET--PASALQFDAL-  166 (404)
T ss_pred             eEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccce-EEEeeccCCcccceEeec--cCCCCceeeE-
Confidence            99888653    345566677899999999999999999999999863 333332333322111111  0011111111 


Q ss_pred             CEEEEEeCCCcEEEEECCCce----EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceE
Q 042434          366 ENLISVLSDKDIRILNLGTYA----ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYV  441 (517)
Q Consensus       366 ~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~  441 (517)
                       +...|...|.|.+..+....    ....++...+.+++|.+..+.+.++..|..+.+||+...........+|...+..
T Consensus       167 -~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~  245 (404)
T KOG1409|consen  167 -YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQA  245 (404)
T ss_pred             -EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhh
Confidence             45566666666555443322    5566788899999999999999999999999999998776777777788776333


Q ss_pred             EEeecCCCCCcEEEEecCCCcEEEEecC
Q 042434          442 IRSCFGGLDGTFIASGSENSQIYIWNRR  469 (517)
Q Consensus       442 i~~~~~s~~~~~l~~~~~dg~i~iwd~~  469 (517)
                         ...-+--+.+++++.||.|.+|+.+
T Consensus       246 ---l~~~~~t~~l~S~~edg~i~~w~mn  270 (404)
T KOG1409|consen  246 ---LSYAQHTRQLISCGEDGGIVVWNMN  270 (404)
T ss_pred             ---hhhhhhheeeeeccCCCeEEEEecc
Confidence               3223456789999999999999976

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.65  E-value=1.6e-14  Score=127.15  Aligned_cols=240  Identities=14%  Similarity=0.131  Sum_probs=178.2

Q ss_pred             CCCCEEEEEECCCC--CeEEEEeCCCeEEEEECCCCcEEEEe------CCCCCceEEEEEeCCCCeEEEeeCCCceeEEE
Q 042434          266 HQNPVSFVAWSPDD--TKLLTCGNAEVLKLWDVETGICKHTF------GDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM  337 (517)
Q Consensus       266 h~~~v~~l~~s~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~------~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~  337 (517)
                      -...|..++|.-++  ..+..++.|..+..+.+....+....      .....+|..+...  ...|++|..+|.  +.+
T Consensus        54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~--l~~  129 (412)
T KOG3881|consen   54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGN--LQV  129 (412)
T ss_pred             hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCc--EEE
Confidence            34567788887655  34555546667777777665544432      2335566666554  346777788888  666


Q ss_pred             EeCC-----CCeeEeeeCcCCCceEEEEEccCCCEEE-EEeCC--CcEEEEECCCceEEeec-----------cCCCeeE
Q 042434          338 CDCD-----GNEIKAWRGTRIPKVLDLAVTPDGENLI-SVLSD--KDIRILNLGTYAERVIS-----------EEHPITS  398 (517)
Q Consensus       338 ~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d--g~i~i~d~~~~~~~~~~-----------~~~~i~~  398 (517)
                      |...     ...+..+..+.  .+..+.-++....++ +|+..  ..+.+||+...+.....           ..-.++.
T Consensus       130 ~~~k~~d~hss~l~~la~g~--g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~td  207 (412)
T KOG3881|consen  130 RHDKSGDLHSSKLIKLATGP--GLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITD  207 (412)
T ss_pred             EeccCCccccccceeeecCC--ceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecc
Confidence            6665     34444444443  566777777666554 58888  78999999887532222           1225678


Q ss_pred             EEEcCC--CCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEE
Q 042434          399 LSVSVD--CKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEI  476 (517)
Q Consensus       399 ~~~s~~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~  476 (517)
                      +.|-+.  ...|++++.-+.+++||.+.+..++..+......   +.+....|+|++|++|..-|.+..||.+.+++...
T Consensus       208 i~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~---is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~  284 (412)
T KOG3881|consen  208 IRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENP---ISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGC  284 (412)
T ss_pred             ceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCc---ceeeeecCCCcEEEEecccchhheecccCceeecc
Confidence            888887  8899999999999999999887777777665554   55566679999999999999999999999998877


Q ss_pred             -ecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434          477 -LSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS  515 (517)
Q Consensus       477 -~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~  515 (517)
                       +.+-.+.|+++..+|.+ .++++||-|..|||+|+.+.+
T Consensus       285 ~~kg~tGsirsih~hp~~-~~las~GLDRyvRIhD~ktrk  323 (412)
T KOG3881|consen  285 GLKGITGSIRSIHCHPTH-PVLASCGLDRYVRIHDIKTRK  323 (412)
T ss_pred             ccCCccCCcceEEEcCCC-ceEEeeccceeEEEeecccch
Confidence             88899999999999999 699999999999999999854

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.65  E-value=4.7e-14  Score=138.86  Aligned_cols=271  Identities=18%  Similarity=0.240  Sum_probs=188.0

Q ss_pred             CCCcccccCCCcccEEEeccc---cCcEEEEEECC--CCCEEEEeeCCCcEEEEEecCC--CeeeEEEEeccC-------
Q 042434          201 EDHCCGRDQIPTETVQILTEH---KNEVWFVQFSN--NGEYLASSSSDCSAIIWKVLED--SKLTLKHTLRSH-------  266 (517)
Q Consensus       201 ~~~~~~~~~~~~~~~~~l~~h---~~~v~~~~~s~--~~~~l~t~~~dg~i~iw~~~~~--~~~~~~~~~~~h-------  266 (517)
                      .+.++.|+...++....+..+   ...|+.+.+-.  |..++.+|+.||.|+||+-...  ++.+.+..+.+-       
T Consensus      1085 r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~ 1164 (1387)
T KOG1517|consen 1085 RERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGA 1164 (1387)
T ss_pred             cceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccC
Confidence            345667777777777666543   45788888755  5578999999999999976433  333444333221       


Q ss_pred             CCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeC-CCCCceEEEEEeC-CCCeEEEeeCCCceeEEEEeCCC--
Q 042434          267 QNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFG-DHGFIVSSCAWFP-DSKRLVCGSSDTEKGIFMCDCDG--  342 (517)
Q Consensus       267 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~-~~~~l~~~~~d~~v~i~~~~~~~--  342 (517)
                      .+.=.-++|.....+|+++|.-..|+|||.....+.+.+. +....|+++.-+. .|+.+++|..||.+++|.-.+..  
T Consensus      1165 r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d 1244 (1387)
T KOG1517|consen 1165 RGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD 1244 (1387)
T ss_pred             CCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcc
Confidence            1112446787777777777778899999999888877765 3355677765543 47899999999994444333332  


Q ss_pred             CeeEeeeCcCC-CceEEEEEccCCC-EEEEEeCCCcEEEEECCCce-EEe---ec---cCCCeeEEEEcCCCCEEEEEeC
Q 042434          343 NEIKAWRGTRI-PKVLDLAVTPDGE-NLISVLSDKDIRILNLGTYA-ERV---IS---EEHPITSLSVSVDCKNFIVNLN  413 (517)
Q Consensus       343 ~~~~~~~~~~~-~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~-~~~---~~---~~~~i~~~~~s~~~~~l~~~~~  413 (517)
                      ..+..++.+.. .+|..+.+.+.|- .+++|+.+|.|++||++... ...   ..   .+...+++..++....+++|+.
T Consensus      1245 s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~ 1324 (1387)
T KOG1517|consen 1245 SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA 1324 (1387)
T ss_pred             ccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc
Confidence            23344444432 2388899988765 49999999999999999833 111   11   1335899999999999999998


Q ss_pred             CCeEEEEEcCCCCccceEEeC-c-ccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCc
Q 042434          414 SQEIHMWDVAGKWEKPFKYTG-H-SQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSK  472 (517)
Q Consensus       414 d~~i~~~d~~~~~~~~~~~~~-~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  472 (517)
                       +.|+||++.+......+... . .+....+.++.|+|.--.+|+|+.|.+|.||....+.
T Consensus      1325 -q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1325 -QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             -ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence             99999999775333333221 1 1223346788889999999999999999999876543

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=6.6e-14  Score=122.00  Aligned_cols=187  Identities=18%  Similarity=0.178  Sum_probs=135.4

Q ss_pred             cCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCC-CeEEEEeCCCeEEEEECCCC-
Q 042434          222 KNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDD-TKLLTCGNAEVLKLWDVETG-  299 (517)
Q Consensus       222 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~-  299 (517)
                      ...+..++|++.-..+|++..|-.|++|+-.... ...++  ......|+|++|-|.+ +-|+.|+.. -|.+|..... 
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~-pt~Lk--s~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tl  173 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTC-PTKLK--SVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTL  173 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCCCC-Cceec--chhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccc
Confidence            4456778999977778899999999999875421 11111  2235679999999965 556666655 5899976421 


Q ss_pred             ---cEE--------EEeC-CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCE
Q 042434          300 ---ICK--------HTFG-DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGEN  367 (517)
Q Consensus       300 ---~~~--------~~~~-~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  367 (517)
                         ..+        ..++ ....+|+++.|.+||..+++++.+.. .|.+||.+......+.....+.+.-+.|||||.+
T Consensus       174 n~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gss-si~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~  252 (445)
T KOG2139|consen  174 NANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSS-SIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDV  252 (445)
T ss_pred             ccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcc-eEEEEcCCCCCcccccccCCCceeeEEEcCCCCE
Confidence               111        1111 12378999999999999999987653 2888998876655555555567899999999999


Q ss_pred             EEEEeCCCcEEEEECCC-ce-EEeeccCCCeeEEEEcCCCCEEEEEeC
Q 042434          368 LISVLSDKDIRILNLGT-YA-ERVISEEHPITSLSVSVDCKNFIVNLN  413 (517)
Q Consensus       368 l~~~~~dg~i~i~d~~~-~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~  413 (517)
                      +++++-|+..++|+... .. .......+.+...+|+|+|++++....
T Consensus       253 lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s  300 (445)
T KOG2139|consen  253 LFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS  300 (445)
T ss_pred             EEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc
Confidence            99999999999996543 33 334444559999999999998776653

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=4.9e-15  Score=135.65  Aligned_cols=215  Identities=18%  Similarity=0.245  Sum_probs=157.2

Q ss_pred             EEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeC-CCCCceEEEEEeC--CCCeEEEeeCCCceeE
Q 042434          259 LKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFG-DHGFIVSSCAWFP--DSKRLVCGSSDTEKGI  335 (517)
Q Consensus       259 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~--~~~~l~~~~~d~~v~i  335 (517)
                      ....+.||++.|.|+.|+.+|.+|++|+.|-.+.|||.-..+.++.+. +|...|.++.|-|  +.+.+++|..|..  |
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~--i  119 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKL--I  119 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcce--E
Confidence            346788999999999999999999999999999999998888877764 8999999999999  4668899999999  5


Q ss_pred             EEEeCCC-----------CeeEeeeCcCCCceEEEEEccCC-CEEEEEeCCCcEEEEECCCceEE------------eec
Q 042434          336 FMCDCDG-----------NEIKAWRGTRIPKVLDLAVTPDG-ENLISVLSDKDIRILNLGTYAER------------VIS  391 (517)
Q Consensus       336 ~~~~~~~-----------~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~------------~~~  391 (517)
                      +++|+..           .+...+ ..+...|..++..|++ ..+.+++.||+|+-||++....-            ...
T Consensus       120 ~lfdl~~~~~~~~d~~~~~~~~~~-~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~  198 (758)
T KOG1310|consen  120 KLFDLDSSKEGGMDHGMEETTRCW-SCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNP  198 (758)
T ss_pred             EEEecccccccccccCccchhhhh-hhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhch
Confidence            5555542           111222 2334578889999998 68899999999999999874311            011


Q ss_pred             cCCCeeEEEEcCC-CCEEEEEeCCCeEEEEEcCCC-------Cc----------cceEE-eCcc--------cCceEEEe
Q 042434          392 EEHPITSLSVSVD-CKNFIVNLNSQEIHMWDVAGK-------WE----------KPFKY-TGHS--------QNKYVIRS  444 (517)
Q Consensus       392 ~~~~i~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~-------~~----------~~~~~-~~~~--------~~~~~i~~  444 (517)
                      ..-...++.++|. ..+|++|+.|...++||.+..       +.          .+..+ .+|.        ....+++.
T Consensus       199 ~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~  278 (758)
T KOG1310|consen  199 QLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTY  278 (758)
T ss_pred             hhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEE
Confidence            1235678899995 567889999999999995321       00          01111 1222        11233566


Q ss_pred             ecCCCCCcEEEEecCCCcEEEEecCCCceeEE
Q 042434          445 CFGGLDGTFIASGSENSQIYIWNRRNSKPIEI  476 (517)
Q Consensus       445 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~  476 (517)
                      +.|+|+|.-|++.-..-.|+++|+..++....
T Consensus       279 vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~  310 (758)
T KOG1310|consen  279 VTFNPNGTELLVSWGGEHVYLFDVNEDKSPTP  310 (758)
T ss_pred             EEECCCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence            67899998777766666899999988765443

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.64  E-value=2.7e-15  Score=134.65  Aligned_cols=276  Identities=13%  Similarity=0.173  Sum_probs=199.4

Q ss_pred             cCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcE
Q 042434          222 KNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGIC  301 (517)
Q Consensus       222 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~  301 (517)
                      .-..+.+.++.+|++|+.|+.-|.+-.+|+.+.   .....+. -...|.++.|-.+..++|++ ....+.|||- .|..
T Consensus       129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~---~L~~Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~-~GtE  202 (545)
T KOG1272|consen  129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTK---KLHFEIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYDN-NGTE  202 (545)
T ss_pred             ccCCeeeeecCCccEEEecCCccceeeeecccc---eeeeeee-hhhhhhhhhhhcchHHHHhh-hhceEEEecC-CCcE
Confidence            345567899999999999999999999999755   3333332 24678999999888888875 5568999994 6777


Q ss_pred             EEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEE
Q 042434          302 KHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILN  381 (517)
Q Consensus       302 ~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  381 (517)
                      ++.++.+ ..|..+.|.|..-+|++++..|.  +..-|.....+..-.....+.+..++-+|-+..+-+|..+|+|.+|.
T Consensus       203 lHClk~~-~~v~rLeFLPyHfLL~~~~~~G~--L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWS  279 (545)
T KOG1272|consen  203 LHCLKRH-IRVARLEFLPYHFLLVAASEAGF--LKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWS  279 (545)
T ss_pred             Eeehhhc-CchhhhcccchhheeeecccCCc--eEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecC
Confidence            7777554 56888999999989999999998  77777775554433333446788899999999999999999999999


Q ss_pred             CCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecC
Q 042434          382 LGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSE  459 (517)
Q Consensus       382 ~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  459 (517)
                      .....  .....|.++|.++++.++|.|+++++.|..++|||++...........+.     ...+.+|..|  +++.+.
T Consensus       280 P~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~-----a~~ls~Sqkg--lLA~~~  352 (545)
T KOG1272|consen  280 PNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHP-----ASNLSLSQKG--LLALSY  352 (545)
T ss_pred             CCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCC-----cccccccccc--ceeeec
Confidence            98877  66778999999999999999999999999999999988743333333222     2233334444  344445


Q ss_pred             CCcEEEEe-cCCCc--eeEEecCC--CCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCC
Q 042434          460 NSQIYIWN-RRNSK--PIEILSGH--SMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQS  514 (517)
Q Consensus       460 dg~i~iwd-~~~~~--~~~~~~~h--~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~  514 (517)
                      ...+.||. .-.+.  .-..+-.|  .+.|.++.|.|-. .+|-.|...|.-.|-=+..|
T Consensus       353 G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~E-DvLGIGH~~G~tsilVPGsG  411 (545)
T KOG1272|consen  353 GDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYE-DVLGIGHAGGITSILVPGSG  411 (545)
T ss_pred             CCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHH-HeeeccccCCceeEeccCCC
Confidence            55799994 32221  11111123  3589999999976 56665555554444433333

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.63  E-value=1.4e-16  Score=153.38  Aligned_cols=294  Identities=15%  Similarity=0.150  Sum_probs=201.3

Q ss_pred             CcchHHHHHHHHHHhccccccCCCCCc-cccccCCCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEE
Q 042434          169 PERRLEHLVETAVTSQIDSCQYHNSSV-AISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAI  247 (517)
Q Consensus       169 ~~~rl~~l~~~~~~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~  247 (517)
                      .+..|..++.+.++.|..+|..+.... .|+++..|.|.-.....+....+.+-.+.=  -.+++.+. +-.+..|....
T Consensus      1011 ~~~sLdSIVt~Ylr~QH~~CknPVtTcPPfSLf~pH~CPEpk~~~~ap~N~t~Rl~~r--el~~~y~g-V~g~~~dr~~I 1087 (1516)
T KOG1832|consen 1011 ERLSLDSIVTQYLRHQHRQCKNPVTTCPPFSLFHPHVCPEPKRLLEAPLNMTGRLGTR--ELQSFYSG-VHGNRRDRQFI 1087 (1516)
T ss_pred             CCCcHHHHHHHHHHHHHHhhcCCcccCCChhhcCCccCCChHHHhhcchhhhhcccch--hhcCcccc-cccCcccchhh
Confidence            356789999999999999999987777 899999999865433333222222211111  11222211 22223333322


Q ss_pred             EEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEe
Q 042434          248 IWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCG  327 (517)
Q Consensus       248 iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~  327 (517)
                       +     ..++..+++..|+...+|++|+.+.+.|+.|+..|.|+++++.+|........|..+|+.+.-+.+|...++.
T Consensus      1088 -F-----SRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Lts 1161 (1516)
T KOG1832|consen 1088 -F-----SRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTS 1161 (1516)
T ss_pred             -H-----hhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeee
Confidence             2     2334556788899999999999999999999999999999999999999999999999999999999988877


Q ss_pred             eCCCceeEEEEeCCC--CeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceE--E----eeccCCCeeEE
Q 042434          328 SSDTEKGIFMCDCDG--NEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAE--R----VISEEHPITSL  399 (517)
Q Consensus       328 ~~d~~v~i~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~----~~~~~~~i~~~  399 (517)
                      +.-..--.-+|+...  .....+.     .-.++.|+.....-+.|+......+||+.++..  .    .......-+..
T Consensus      1162 ss~S~PlsaLW~~~s~~~~~Hsf~-----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a 1236 (1516)
T KOG1832|consen 1162 SSSSSPLSALWDASSTGGPRHSFD-----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLA 1236 (1516)
T ss_pred             ccccCchHHHhccccccCcccccc-----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhcccc
Confidence            655432244566542  3333332     345677877655556677777899999998761  1    11222234778


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecC
Q 042434          400 SVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSG  479 (517)
Q Consensus       400 ~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  479 (517)
                      .|+|+...++-   ||  .+||++.. ..+..|......   + .-.|+|.|.-++.-++     |||+++.++++..+.
T Consensus      1237 ~FsP~D~LIln---dG--vLWDvR~~-~aIh~FD~ft~~---~-~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~ 1301 (1516)
T KOG1832|consen 1237 HFSPCDTLILN---DG--VLWDVRIP-EAIHRFDQFTDY---G-GGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPS 1301 (1516)
T ss_pred             ccCCCcceEee---Cc--eeeeeccH-HHHhhhhhheec---c-cccccCCCceEEeech-----hhhhHHHHHHhcCcc
Confidence            89999887763   44  68999876 556555544421   1 2234899999998876     999999998877653


Q ss_pred             CCCCeeEEEecCCC
Q 042434          480 HSMTVNCVSWNPKR  493 (517)
Q Consensus       480 h~~~v~~v~~~~~~  493 (517)
                      -  .-..|.|+..|
T Consensus      1302 L--dqc~VtFNstG 1313 (1516)
T KOG1832|consen 1302 L--DQCAVTFNSTG 1313 (1516)
T ss_pred             c--cceEEEeccCc
Confidence            2  23467777777

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.63  E-value=6.6e-12  Score=118.51  Aligned_cols=268  Identities=14%  Similarity=0.193  Sum_probs=173.5

Q ss_pred             ccCcEEEEEECCCCCEEEEeeC----CCcEEEEEecCC-CeeeEEEEeccCCCCEEEEEECCCCCeEEEEeC-CCeEEEE
Q 042434          221 HKNEVWFVQFSNNGEYLASSSS----DCSAIIWKVLED-SKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGN-AEVLKLW  294 (517)
Q Consensus       221 h~~~v~~~~~s~~~~~l~t~~~----dg~i~iw~~~~~-~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-dg~i~iw  294 (517)
                      -......++++|++++|.++..    +|.|..|++... ..+..+............++++|++++|+++.. +|.|.++
T Consensus        35 ~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~  114 (345)
T PF10282_consen   35 EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVF  114 (345)
T ss_dssp             ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEE
Confidence            4556677899999999998866    579999999876 566676666655666788999999999998875 8899999


Q ss_pred             ECCC-CcEEEE---eC----------CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCe--e---EeeeCcCCCc
Q 042434          295 DVET-GICKHT---FG----------DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNE--I---KAWRGTRIPK  355 (517)
Q Consensus       295 d~~~-~~~~~~---~~----------~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~--~---~~~~~~~~~~  355 (517)
                      ++.. |.....   +.          .......++.++|+++++++..... -+|+.++.+...  +   ..........
T Consensus       115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~-D~v~~~~~~~~~~~l~~~~~~~~~~G~G  193 (345)
T PF10282_consen  115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGA-DRVYVYDIDDDTGKLTPVDSIKVPPGSG  193 (345)
T ss_dssp             EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTT-TEEEEEEE-TTS-TEEEEEEEECSTTSS
T ss_pred             EccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCC-CEEEEEEEeCCCceEEEeeccccccCCC
Confidence            9976 443322   21          1245578899999999988875432 236665554322  3   2233344456


Q ss_pred             eEEEEEccCCCEEEEEe-CCCcEEEEECC--CceE---E---eec----cCCCeeEEEEcCCCCEEEEEeC-CCeEEEEE
Q 042434          356 VLDLAVTPDGENLISVL-SDKDIRILNLG--TYAE---R---VIS----EEHPITSLSVSVDCKNFIVNLN-SQEIHMWD  421 (517)
Q Consensus       356 i~~~~~~~~~~~l~~~~-~dg~i~i~d~~--~~~~---~---~~~----~~~~i~~~~~s~~~~~l~~~~~-d~~i~~~d  421 (517)
                      ...+.|+|+++++++.. .++.|.+|++.  ++..   .   ...    .......+.++|||++++++.. .+.|.+|+
T Consensus       194 PRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~  273 (345)
T PF10282_consen  194 PRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFD  273 (345)
T ss_dssp             EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEE
T ss_pred             CcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEE
Confidence            88999999999876655 57789999887  3321   1   111    1125788999999999888765 67899999


Q ss_pred             cCCCCccceEEeCcccCceEEEeecCCCCCcEEEEec-CCCcEEEEec--CCCceeEEec-CCCCCeeEEEe
Q 042434          422 VAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGS-ENSQIYIWNR--RNSKPIEILS-GHSMTVNCVSW  489 (517)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iwd~--~~~~~~~~~~-~h~~~v~~v~~  489 (517)
                      +....................+.+.++|+|++|+++. .++.|.+|++  .+|.+...-. ..-....||.|
T Consensus       274 ~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f  345 (345)
T PF10282_consen  274 LDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF  345 (345)
T ss_dssp             ECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred             EecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence            9432122222221111111134455599999999887 4568999866  5666544432 12344566655

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.62  E-value=4.3e-13  Score=123.73  Aligned_cols=273  Identities=16%  Similarity=0.254  Sum_probs=172.8

Q ss_pred             cCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEE-----eCC-----CeE
Q 042434          222 KNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTC-----GNA-----EVL  291 (517)
Q Consensus       222 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-----~~d-----g~i  291 (517)
                      ..+++..++|++|+++|.+. +..++|++.....   .+.+..  ...+.++.|+|-|++|.+=     ..+     -.+
T Consensus        34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~---~~lt~~--~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~  107 (566)
T KOG2315|consen   34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLK---VVLCVE--LKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNV  107 (566)
T ss_pred             CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCc---EEEEec--cceeeeeeecccccccccccccccccCCCCCCCce
Confidence            44577889999999988865 5689999986554   222222  2278999999999988752     222     257


Q ss_pred             EEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCe---------------------------
Q 042434          292 KLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNE---------------------------  344 (517)
Q Consensus       292 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~---------------------------  344 (517)
                      .+|+++++.....+......-++..|+.|..+.+--.. +.  +.+++..+..                           
T Consensus       108 ~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~-ne--v~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAv  184 (566)
T KOG2315|consen  108 LVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVS-NE--VQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAV  184 (566)
T ss_pred             eeeeeccceehhheehhhhcCcccccccchhhhhhhhc-ce--EEEEecCCccceeeeeeccceeeEEecCCCCCceEEE
Confidence            79999996555444332222257778877543321111 11  3333332210                           


Q ss_pred             -----------eEeeeCc----C---------CCceEEEEEccCCCE-EEEEeC-----------CCcEEEEECCCce-E
Q 042434          345 -----------IKAWRGT----R---------IPKVLDLAVTPDGEN-LISVLS-----------DKDIRILNLGTYA-E  387 (517)
Q Consensus       345 -----------~~~~~~~----~---------~~~i~~~~~~~~~~~-l~~~~~-----------dg~i~i~d~~~~~-~  387 (517)
                                 ++.+...    +         ...-..+.|++-|.- |+.++.           ..+++++++.... .
T Consensus       185 yvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~  264 (566)
T KOG2315|consen  185 YVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVS  264 (566)
T ss_pred             EccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEE
Confidence                       0111000    0         001123556655552 222221           2357777777444 3


Q ss_pred             EeeccCCCeeEEEEcCCCCEEEEE--eCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCC---Cc
Q 042434          388 RVISEEHPITSLSVSVDCKNFIVN--LNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSEN---SQ  462 (517)
Q Consensus       388 ~~~~~~~~i~~~~~s~~~~~l~~~--~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~  462 (517)
                      ......++|.++.|+|+++-++++  ..-..+.+||++..  .+..+....     -..++|+|.|++++.++.+   |.
T Consensus       265 V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~--~v~df~egp-----RN~~~fnp~g~ii~lAGFGNL~G~  337 (566)
T KOG2315|consen  265 VPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK--PVFDFPEGP-----RNTAFFNPHGNIILLAGFGNLPGD  337 (566)
T ss_pred             EecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC--EeEeCCCCC-----ccceEECCCCCEEEEeecCCCCCc
Confidence            344557899999999999887665  44678999999763  444433222     3356679999999988865   79


Q ss_pred             EEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeC------CCcEEEeCCCC
Q 042434          463 IYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASD------DHTIRIWGPCQ  513 (517)
Q Consensus       463 i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~------dg~v~iw~~~~  513 (517)
                      |-|||+.+.+++..+..-  .-+-+.|+||| .+++|++.      |+.++||++..
T Consensus       338 mEvwDv~n~K~i~~~~a~--~tt~~eW~PdG-e~flTATTaPRlrvdNg~KiwhytG  391 (566)
T KOG2315|consen  338 MEVWDVPNRKLIAKFKAA--NTTVFEWSPDG-EYFLTATTAPRLRVDNGIKIWHYTG  391 (566)
T ss_pred             eEEEeccchhhccccccC--CceEEEEcCCC-cEEEEEeccccEEecCCeEEEEecC
Confidence            999999999998888753  34567999999 57777664      78899999864

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.61  E-value=2.2e-13  Score=125.16  Aligned_cols=275  Identities=16%  Similarity=0.304  Sum_probs=175.1

Q ss_pred             CcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeC-----------CCeE
Q 042434          223 NEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGN-----------AEVL  291 (517)
Q Consensus       223 ~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-----------dg~i  291 (517)
                      =.-+-+.|||.|.||+|--.-| |.+|--   ..+..++.+ .|. .|.-+.|||..+||++-+.           ...+
T Consensus       211 WTetyv~wSP~GTYL~t~Hk~G-I~lWGG---~~f~r~~RF-~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l  284 (698)
T KOG2314|consen  211 WTETYVRWSPKGTYLVTFHKQG-IALWGG---ESFDRIQRF-YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQL  284 (698)
T ss_pred             ceeeeEEecCCceEEEEEeccc-eeeecC---ccHHHHHhc-cCC-CceeeecCCccceEEEecCCccccCcccCCCceE
Confidence            3456789999999999988766 889953   333333333 243 5899999999999998653           1479


Q ss_pred             EEEECCCCcEEEEeCCC--CCceE-EEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEE
Q 042434          292 KLWDVETGICKHTFGDH--GFIVS-SCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENL  368 (517)
Q Consensus       292 ~iwd~~~~~~~~~~~~~--~~~v~-~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  368 (517)
                      +|||+.+|...+.|...  ...++ -..||.|++++|.-..++   |.+++...-.+........+.|....|+|.++.|
T Consensus       285 ~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~s---isIyEtpsf~lld~Kslki~gIr~FswsP~~~ll  361 (698)
T KOG2314|consen  285 IIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNS---ISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLL  361 (698)
T ss_pred             EEEEccccchhcceeccCCCccccceEEeccCCceeEEeccce---EEEEecCceeeecccccCCccccCcccCCCcceE
Confidence            99999999998888653  33333 368999999999887765   5556554433322222233345555566555444


Q ss_pred             EEEeCC---------------------------------------------------------CcEEEEECCCce--EEe
Q 042434          369 ISVLSD---------------------------------------------------------KDIRILNLGTYA--ERV  389 (517)
Q Consensus       369 ~~~~~d---------------------------------------------------------g~i~i~d~~~~~--~~~  389 (517)
                      +-=+..                                                         ..+-|+.++...  ...
T Consensus       362 AYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~  441 (698)
T KOG2314|consen  362 AYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEV  441 (698)
T ss_pred             EEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCcee
Confidence            321110                                                         012222222222  122


Q ss_pred             eccCCCeeEEEEcCCCCEEEEEeC---CCeEEEEEcCCCC---ccceEEeCcccCceEEEeecCCCCCcEEEEe---cCC
Q 042434          390 ISEEHPITSLSVSVDCKNFIVNLN---SQEIHMWDVAGKW---EKPFKYTGHSQNKYVIRSCFGGLDGTFIASG---SEN  460 (517)
Q Consensus       390 ~~~~~~i~~~~~s~~~~~l~~~~~---d~~i~~~d~~~~~---~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~---~~d  460 (517)
                      ......+...+|-|.|+.+++-+.   ..++.+|.+.+..   ..+..+..     .....++|+|.|++++.+   |..
T Consensus       442 velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk-----~~~N~vfwsPkG~fvvva~l~s~~  516 (698)
T KOG2314|consen  442 VELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK-----KFANTVFWSPKGRFVVVAALVSRR  516 (698)
T ss_pred             eecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc-----cccceEEEcCCCcEEEEEEecccc
Confidence            233456788899999998877654   3578888886421   22222222     224567789999999876   457


Q ss_pred             CcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeC------CCcEEEeCCC
Q 042434          461 SQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASD------DHTIRIWGPC  512 (517)
Q Consensus       461 g~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~------dg~v~iw~~~  512 (517)
                      |.+.++|.....+..+-.......+.+.|.|.| ++++|++.      |.--+||++.
T Consensus       517 g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtG-RYvvT~ss~wrhk~d~GYri~tfq  573 (698)
T KOG2314|consen  517 GDLEFYDTDYADLKDTASPEHFAATEVEWDPTG-RYVVTSSSSWRHKVDNGYRIFTFQ  573 (698)
T ss_pred             cceEEEecchhhhhhccCccccccccceECCCC-CEEEEeeehhhhccccceEEEEee
Confidence            899999987533333322223456889999999 68888875      4446666654

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=7.8e-13  Score=128.88  Aligned_cols=235  Identities=19%  Similarity=0.172  Sum_probs=156.3

Q ss_pred             cEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCC-C--eEEEEECCCCcEEEEeCCCCCceEEEEEeCCC
Q 042434          245 SAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNA-E--VLKLWDVETGICKHTFGDHGFIVSSCAWFPDS  321 (517)
Q Consensus       245 ~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~  321 (517)
                      .+.++|......    +.+..+...+.+..|+|||+.|+..+.+ +  .|.+||+.+++.... ...........|+|||
T Consensus       199 ~l~i~d~dG~~~----~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG  273 (448)
T PRK04792        199 QLMIADYDGYNE----QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDG  273 (448)
T ss_pred             EEEEEeCCCCCc----eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCC
Confidence            566667643321    2344567789999999999999876543 2  688999988875432 2223344578999999


Q ss_pred             CeEEE-eeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeC-CC--cEEEEECCCceEE-eeccCCCe
Q 042434          322 KRLVC-GSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLS-DK--DIRILNLGTYAER-VISEEHPI  396 (517)
Q Consensus       322 ~~l~~-~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~-~~~~~~~i  396 (517)
                      +.|+. .+.++...||.++..+.....+.... .......|+|||+.++..+. ++  .|+++|+.+++.. ........
T Consensus       274 ~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~-~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~  352 (448)
T PRK04792        274 KKLALVLSKDGQPEIYVVDIATKALTRITRHR-AIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQN  352 (448)
T ss_pred             CEEEEEEeCCCCeEEEEEECCCCCeEECccCC-CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCC
Confidence            98765 56677777999999877766655433 34567899999998876654 33  5777788776632 22233334


Q ss_pred             eEEEEcCCCCEEEEEeCC-C--eEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCC-C--cEEEEecCC
Q 042434          397 TSLSVSVDCKNFIVNLNS-Q--EIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSEN-S--QIYIWNRRN  470 (517)
Q Consensus       397 ~~~~~s~~~~~l~~~~~d-~--~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g--~i~iwd~~~  470 (517)
                      ...+|+|||++++..+.+ +  .|.++|+.++..  ..+......    ....|+|||+.|+..+.+ |  .+++++. +
T Consensus       353 ~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~--~~lt~~~~d----~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~  425 (448)
T PRK04792        353 LGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM--QVLTSTRLD----ESPSVAPNGTMVIYSTTYQGKQVLAAVSI-D  425 (448)
T ss_pred             cCeeECCCCCEEEEEEecCCceEEEEEECCCCCe--EEccCCCCC----CCceECCCCCEEEEEEecCCceEEEEEEC-C
Confidence            567999999998877653 3  466677766522  222211111    112458999988776544 3  4778886 5


Q ss_pred             CceeEEecCCCCCeeEEEecCC
Q 042434          471 SKPIEILSGHSMTVNCVSWNPK  492 (517)
Q Consensus       471 ~~~~~~~~~h~~~v~~v~~~~~  492 (517)
                      |.....+..+.+.+...+|+|-
T Consensus       426 G~~~~~l~~~~g~~~~p~Wsp~  447 (448)
T PRK04792        426 GRFKARLPAGQGEVKSPAWSPF  447 (448)
T ss_pred             CCceEECcCCCCCcCCCccCCC
Confidence            7777777777777888999873

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.61  E-value=8e-13  Score=129.35  Aligned_cols=234  Identities=18%  Similarity=0.165  Sum_probs=158.0

Q ss_pred             CcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCC---CeEEEEECCCCcEEEEeCCCCCceEEEEEeCC
Q 042434          244 CSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNA---EVLKLWDVETGICKHTFGDHGFIVSSCAWFPD  320 (517)
Q Consensus       244 g~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~  320 (517)
                      ..|.++|.....    ...+..+...+.+.+|+|||++|+.++.+   ..|.+||+.+++.... ..+...+.+++|+||
T Consensus       170 ~~l~~~d~~g~~----~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spD  244 (417)
T TIGR02800       170 YELQVADYDGAN----PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPD  244 (417)
T ss_pred             ceEEEEcCCCCC----CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCC
Confidence            356777764322    13344566789999999999999987654   4799999998865443 345556677999999


Q ss_pred             CCeEEE-eeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCC-C--cEEEEECCCce-EEeeccCCC
Q 042434          321 SKRLVC-GSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSD-K--DIRILNLGTYA-ERVISEEHP  395 (517)
Q Consensus       321 ~~~l~~-~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~-~~~~~~~~~  395 (517)
                      |+.|+. .+.++...++.|+..+.....+.... .......|+|+|+.++..+.. +  .|+++|+.+.. .........
T Consensus       245 g~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~  323 (417)
T TIGR02800       245 GSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGP-GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGY  323 (417)
T ss_pred             CCEEEEEECCCCCccEEEEECCCCCEEECCCCC-CCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCC
Confidence            997764 45566666999999876665554433 234567899999988766543 3  58888887766 333335556


Q ss_pred             eeEEEEcCCCCEEEEEeCCC---eEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCC---cEEEEecC
Q 042434          396 ITSLSVSVDCKNFIVNLNSQ---EIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENS---QIYIWNRR  469 (517)
Q Consensus       396 i~~~~~s~~~~~l~~~~~d~---~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~iwd~~  469 (517)
                      .....|+|+|++++.+..++   .|.+||+.++..  ..+.....    .....|+|||++|+..+.++   .+++.+. 
T Consensus       324 ~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~--~~l~~~~~----~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-  396 (417)
T TIGR02800       324 NASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE--RVLTDTGL----DESPSFAPNGRMILYATTRGGRGVLGLVST-  396 (417)
T ss_pred             ccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe--EEccCCCC----CCCceECCCCCEEEEEEeCCCcEEEEEEEC-
Confidence            77889999999999988776   789999876422  22221111    12234589999888877654   4555554 


Q ss_pred             CCceeEEecCCCCCeeEEEec
Q 042434          470 NSKPIEILSGHSMTVNCVSWN  490 (517)
Q Consensus       470 ~~~~~~~~~~h~~~v~~v~~~  490 (517)
                      +++....+..+.+.+..++|+
T Consensus       397 ~g~~~~~~~~~~g~~~~~~ws  417 (417)
T TIGR02800       397 DGRFRARLPLGNGDVREPAWS  417 (417)
T ss_pred             CCceeeECCCCCCCcCCCCCC
Confidence            455556665555566666553

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.60  E-value=8.6e-13  Score=113.34  Aligned_cols=233  Identities=15%  Similarity=0.236  Sum_probs=154.1

Q ss_pred             CEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCC--ceEEEEEeCCCCeEEE-eeCCC----ceeEEEEeCC
Q 042434          269 PVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGF--IVSSCAWFPDSKRLVC-GSSDT----EKGIFMCDCD  341 (517)
Q Consensus       269 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~i~~~~~~~~l~~-~~~d~----~v~i~~~~~~  341 (517)
                      ...+++|+.|..-+++|..+| .+||+.+.-+.......+.+  .+..+-|  ..++++. |+.+.    ..++.+||-.
T Consensus         7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD~   83 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDDL   83 (346)
T ss_pred             ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEecc
Confidence            345599999998888877665 79998865433222222222  2222222  2334443 33331    2347888854


Q ss_pred             -CCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEee---ccCCCeeEEEEcCCCCEEEE-EeCC
Q 042434          342 -GNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVI---SEEHPITSLSVSVDCKNFIV-NLNS  414 (517)
Q Consensus       342 -~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~---~~~~~i~~~~~s~~~~~l~~-~~~d  414 (517)
                       ..++..+....  +|.++.+.++  .+++. ..+.|+||...+..  ...+   ..+....+++-..+...++. |..-
T Consensus        84 k~~~i~el~f~~--~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~  158 (346)
T KOG2111|consen   84 KERCIIELSFNS--EIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKT  158 (346)
T ss_pred             cCcEEEEEEecc--ceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCcc
Confidence             44444444433  7999998876  34433 56789999987433  2211   11222333332223333443 3347


Q ss_pred             CeEEEEEcCCCCc-cceEEeCcccCceEEEeecCCCCCcEEEEecCCCc-EEEEecCCCceeEEecC--CCCCeeEEEec
Q 042434          415 QEIHMWDVAGKWE-KPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQ-IYIWNRRNSKPIEILSG--HSMTVNCVSWN  490 (517)
Q Consensus       415 ~~i~~~d~~~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~--h~~~v~~v~~~  490 (517)
                      |.|++-|+..... .+..+..|...   |.++..+.+|..+|++|..|+ |+|||..+|+++..+.-  ....|.+++|+
T Consensus       159 GqvQi~dL~~~~~~~p~~I~AH~s~---Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFS  235 (346)
T KOG2111|consen  159 GQVQIVDLASTKPNAPSIINAHDSD---IACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFS  235 (346)
T ss_pred             ceEEEEEhhhcCcCCceEEEcccCc---eeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeC
Confidence            8999999976533 45777888876   666777899999999999996 79999999999999873  34689999999


Q ss_pred             CCCCcEEEEeeCCCcEEEeCCCC
Q 042434          491 PKRPKMLASASDDHTIRIWGPCQ  513 (517)
Q Consensus       491 ~~~~~~l~s~~~dg~v~iw~~~~  513 (517)
                      |+. .+||.+|+-|+|+|+.+..
T Consensus       236 p~~-s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  236 PNS-SWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             CCc-cEEEEEcCCCeEEEEEeec
Confidence            999 7999999999999998865

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=1.2e-14  Score=131.38  Aligned_cols=257  Identities=21%  Similarity=0.256  Sum_probs=191.3

Q ss_pred             eEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeC-CCCCceEEEEEeCC--CCeEEEeeCCCcee
Q 042434          258 TLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFG-DHGFIVSSCAWFPD--SKRLVCGSSDTEKG  334 (517)
Q Consensus       258 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~--~~~l~~~~~d~~v~  334 (517)
                      .....+..|.+.|..+.|...|..|++|+.|..|.+||...++....+. +|...|....|.|.  ...+++++.||.++
T Consensus       133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr  212 (559)
T KOG1334|consen  133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR  212 (559)
T ss_pred             hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence            3446678899999999999999999999999999999999998877764 78888888888884  56899999999988


Q ss_pred             EEEEeCCCCee-EeeeCcCCCceEEEEEccCCC-EEEEEeCCCcEEEEECCCce----EEeec-cCC---CeeEEEEcCC
Q 042434          335 IFMCDCDGNEI-KAWRGTRIPKVLDLAVTPDGE-NLISVLSDKDIRILNLGTYA----ERVIS-EEH---PITSLSVSVD  404 (517)
Q Consensus       335 i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~----~~~~~-~~~---~i~~~~~s~~  404 (517)
                      +-.....+... ......+.++|.-++.-|+.. .|.+++.|+.+.-+|++...    ..... ...   ....++..|.
T Consensus       213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~  292 (559)
T KOG1334|consen  213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR  292 (559)
T ss_pred             eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence            88777776555 334455667899999999765 68899999999999998765    11111 112   4577888886


Q ss_pred             CC-EEEEEeCCCeEEEEEcCCCCcc-----ceEEeCcc---cCceEEEeecCCCCCcEEEEecCCCcEEEEecCC--C--
Q 042434          405 CK-NFIVNLNSQEIHMWDVAGKWEK-----PFKYTGHS---QNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRN--S--  471 (517)
Q Consensus       405 ~~-~l~~~~~d~~i~~~d~~~~~~~-----~~~~~~~~---~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~--~--  471 (517)
                      .. .+++++.|..+++||.+.-...     +..+..+.   .....|+++.++.++.-+.+.-.|-.|+++.-.-  |  
T Consensus       293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~  372 (559)
T KOG1334|consen  293 NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSE  372 (559)
T ss_pred             CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCC
Confidence            55 7899999999999998653221     11221111   2234477777787777777777788899995332  2  


Q ss_pred             --------ceeE-EecCCC--CCeeEEEec-CCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434          472 --------KPIE-ILSGHS--MTVNCVSWN-PKRPKMLASASDDHTIRIWGPCQSS  515 (517)
Q Consensus       472 --------~~~~-~~~~h~--~~v~~v~~~-~~~~~~l~s~~~dg~v~iw~~~~~~  515 (517)
                              ..+. .++||.  ..|.++-|- |.. .++++||+-|.|.||+-.+++
T Consensus       373 p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrs-EyVvSGSDCGhIFiW~K~t~e  427 (559)
T KOG1334|consen  373 PDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRS-EYVVSGSDCGHIFIWDKKTGE  427 (559)
T ss_pred             CCCCcchhhccchhhcccccccccceeeeccCcc-ceEEecCccceEEEEecchhH
Confidence                    1222 367885  357777664 555 799999999999999987765

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.60  E-value=9.2e-13  Score=123.93  Aligned_cols=268  Identities=13%  Similarity=0.103  Sum_probs=166.8

Q ss_pred             EEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEE
Q 042434          238 ASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAW  317 (517)
Q Consensus       238 ~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~  317 (517)
                      ++-..+|.|.|.|..+.   +.+..+......-..+.|+|||+++++++.||.|.++|+.+++.+.++... ....++++
T Consensus        10 V~~~~~~~v~viD~~t~---~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~   85 (369)
T PF02239_consen   10 VVERGSGSVAVIDGATN---KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAV   85 (369)
T ss_dssp             EEEGGGTEEEEEETTT----SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE
T ss_pred             EEecCCCEEEEEECCCC---eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEE
Confidence            45567899999998655   444555544444455789999999999999999999999999999988544 45688999


Q ss_pred             eCCCCeEEEee-CCCceeEEEEeCCCC-eeEeeeCc------CCCceEEEEEccCCCEEEEEeC-CCcEEEEECCCce--
Q 042434          318 FPDSKRLVCGS-SDTEKGIFMCDCDGN-EIKAWRGT------RIPKVLDLAVTPDGENLISVLS-DKDIRILNLGTYA--  386 (517)
Q Consensus       318 ~~~~~~l~~~~-~d~~v~i~~~~~~~~-~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~--  386 (517)
                      ++||++++++. ..+.  +.++|..+. .++.+...      ..+.+..+..+|.+..++..-. .+.|.+.|.....  
T Consensus        86 s~DG~~~~v~n~~~~~--v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~  163 (369)
T PF02239_consen   86 SPDGKYVYVANYEPGT--VSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL  163 (369)
T ss_dssp             --TTTEEEEEEEETTE--EEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE
T ss_pred             cCCCCEEEEEecCCCc--eeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc
Confidence            99999998876 4666  888897754 34443322      2346778888888886655544 5889899977654  


Q ss_pred             -EEeeccCCCeeEEEEcCCCCEEEEE-eCCCeEEEEEcCCCCccceEEe-C---cccCceEEE-------eecCCCCCcE
Q 042434          387 -ERVISEEHPITSLSVSVDCKNFIVN-LNSQEIHMWDVAGKWEKPFKYT-G---HSQNKYVIR-------SCFGGLDGTF  453 (517)
Q Consensus       387 -~~~~~~~~~i~~~~~s~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~-~---~~~~~~~i~-------~~~~s~~~~~  453 (517)
                       ..............|+|++++++++ ..++.|.++|..+. ....... +   |......+-       +.. +..+..
T Consensus       164 ~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~-k~v~~i~~g~~p~~~~~~~~php~~g~vw~~-~~~~~~  241 (369)
T PF02239_consen  164 KVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG-KLVALIDTGKKPHPGPGANFPHPGFGPVWAT-SGLGYF  241 (369)
T ss_dssp             EEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT-EEEEEEE-SSSBEETTEEEEEETTTEEEEEE-EBSSSS
T ss_pred             ceeeecccccccccccCcccceeeecccccceeEEEeeccc-eEEEEeeccccccccccccccCCCcceEEee-ccccce
Confidence             3445566678889999999998775 45778999998775 3322221 1   111111000       000 112223


Q ss_pred             EEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEe----eCCCcEEEeCCCCCC
Q 042434          454 IASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASA----SDDHTIRIWGPCQSS  515 (517)
Q Consensus       454 l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~----~~dg~v~iw~~~~~~  515 (517)
                      .++.-....+.+||..+.+.+.++....++ .-+..||+++ ++...    ...++|.++|..+.+
T Consensus       242 ~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~-~vwvd~~~~~~~~~v~viD~~tl~  305 (369)
T PF02239_consen  242 AIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSR-YVWVDTFLNPDADTVQVIDKKTLK  305 (369)
T ss_dssp             EEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-S-EEEEE-TT-SSHT-EEEEECCGTE
T ss_pred             ecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCc-cEEeeccCCCCCceEEEEECcCcc
Confidence            322222345668999999999999976666 8889999995 55555    556899999988753

...

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=1.6e-12  Score=127.27  Aligned_cols=235  Identities=16%  Similarity=0.140  Sum_probs=157.0

Q ss_pred             cEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCC---CeEEEEECCCCcEEEEeCCCCCceEEEEEeCCC
Q 042434          245 SAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNA---EVLKLWDVETGICKHTFGDHGFIVSSCAWFPDS  321 (517)
Q Consensus       245 ~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~  321 (517)
                      .|.++|.+...    ...+..+...+....|+|||+.|+..+.+   ..|.+||+.+++... +....+.+....|+|||
T Consensus       180 ~l~~~d~~g~~----~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG  254 (430)
T PRK00178        180 TLQRSDYDGAR----AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDG  254 (430)
T ss_pred             EEEEECCCCCC----ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCC
Confidence            36666665332    13344567789999999999999876644   369999999887544 33334455678999999


Q ss_pred             CeEEE-eeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeC-CC--cEEEEECCCceEE-eeccCCCe
Q 042434          322 KRLVC-GSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLS-DK--DIRILNLGTYAER-VISEEHPI  396 (517)
Q Consensus       322 ~~l~~-~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~-~~~~~~~i  396 (517)
                      +.++. .+.+|...||.+|..+.....+.... .......|+|||+.++..+. +|  .|+++|+.++... ........
T Consensus       255 ~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~-~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~  333 (430)
T PRK00178        255 SKLAFVLSKDGNPEIYVMDLASRQLSRVTNHP-AIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYN  333 (430)
T ss_pred             CEEEEEEccCCCceEEEEECCCCCeEEcccCC-CCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCc
Confidence            98874 55566666999999887766554433 34566789999998876654 33  5778888776632 22223334


Q ss_pred             eEEEEcCCCCEEEEEeCC-C--eEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCC---CcEEEEecCC
Q 042434          397 TSLSVSVDCKNFIVNLNS-Q--EIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSEN---SQIYIWNRRN  470 (517)
Q Consensus       397 ~~~~~s~~~~~l~~~~~d-~--~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~iwd~~~  470 (517)
                      ....|+|+|+.++....+ +  .|.+||+.++..  ..+...... .   ...|+|||+.++..+.+   ..|++++.. 
T Consensus       334 ~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~--~~lt~~~~~-~---~p~~spdg~~i~~~~~~~g~~~l~~~~~~-  406 (430)
T PRK00178        334 ARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV--RILTDTSLD-E---SPSVAPNGTMLIYATRQQGRGVLMLVSIN-  406 (430)
T ss_pred             cceEECCCCCEEEEEEccCCceEEEEEECCCCCE--EEccCCCCC-C---CceECCCCCEEEEEEecCCceEEEEEECC-
Confidence            567899999999887653 3  588899877522  222211111 1   22458999998877654   357777874 


Q ss_pred             CceeEEecCCCCCeeEEEecCC
Q 042434          471 SKPIEILSGHSMTVNCVSWNPK  492 (517)
Q Consensus       471 ~~~~~~~~~h~~~v~~v~~~~~  492 (517)
                      |.....+..+.+.+...+|+|-
T Consensus       407 g~~~~~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        407 GRVRLPLPTAQGEVREPSWSPY  428 (430)
T ss_pred             CCceEECcCCCCCcCCCccCCC
Confidence            5555566656677888888874

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.59  E-value=9.3e-12  Score=117.50  Aligned_cols=275  Identities=15%  Similarity=0.166  Sum_probs=175.4

Q ss_pred             EEEeeCC----CcEEEEEec-CCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeC----CCeEEEEECCCC--c--EEE
Q 042434          237 LASSSSD----CSAIIWKVL-EDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGN----AEVLKLWDVETG--I--CKH  303 (517)
Q Consensus       237 l~t~~~d----g~i~iw~~~-~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~----dg~i~iwd~~~~--~--~~~  303 (517)
                      ++.|+..    +.|.+|+++ ....+....... .......++++|++++|.++..    +|.|..|++...  +  .+.
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~   80 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN   80 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence            4455554    789999993 334555555433 3455678999999999998866    568999988653  3  333


Q ss_pred             EeCCCCCceEEEEEeCCCCeEEEeeC-CCceeEEEEeCCCCeeEe---ee---------CcCCCceEEEEEccCCCEEEE
Q 042434          304 TFGDHGFIVSSCAWFPDSKRLVCGSS-DTEKGIFMCDCDGNEIKA---WR---------GTRIPKVLDLAVTPDGENLIS  370 (517)
Q Consensus       304 ~~~~~~~~v~~i~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~---~~---------~~~~~~i~~~~~~~~~~~l~~  370 (517)
                      ...........++++|++++++++.. +|.+.++..+..+.....   +.         ........++.++|+++++++
T Consensus        81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v  160 (345)
T PF10282_consen   81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV  160 (345)
T ss_dssp             EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred             eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence            33334556678999999999999875 777555555544322221   11         112346889999999998887


Q ss_pred             EeC-CCcEEEEECCCce-------EEeeccCCCeeEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCc---cceEEeCcc--
Q 042434          371 VLS-DKDIRILNLGTYA-------ERVISEEHPITSLSVSVDCKNFIVNLN-SQEIHMWDVAGKWE---KPFKYTGHS--  436 (517)
Q Consensus       371 ~~~-dg~i~i~d~~~~~-------~~~~~~~~~i~~~~~s~~~~~l~~~~~-d~~i~~~d~~~~~~---~~~~~~~~~--  436 (517)
                      ... ...|.+|++....       ............+.|+|+++++++... ++.|.+|++.....   .........  
T Consensus       161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~  240 (345)
T PF10282_consen  161 PDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG  240 (345)
T ss_dssp             EETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT
T ss_pred             EecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc
Confidence            654 4579999987644       123355667899999999998876655 77899999872211   111222111  


Q ss_pred             -cCceEEEeecCCCCCcEEEEecC-CCcEEEEecC--CCc--eeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeC
Q 042434          437 -QNKYVIRSCFGGLDGTFIASGSE-NSQIYIWNRR--NSK--PIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWG  510 (517)
Q Consensus       437 -~~~~~i~~~~~s~~~~~l~~~~~-dg~i~iwd~~--~~~--~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~  510 (517)
                       ........+.++|||++|+++.. ++.|.+|++.  +++  .+..+.......+.++++|+|..++++.-.++.|.+|+
T Consensus       241 ~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~  320 (345)
T PF10282_consen  241 FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFD  320 (345)
T ss_dssp             SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred             ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence             11112334455999999888764 5689999983  343  33444433455899999999954555555778999997


Q ss_pred             CC
Q 042434          511 PC  512 (517)
Q Consensus       511 ~~  512 (517)
                      ++
T Consensus       321 ~d  322 (345)
T PF10282_consen  321 ID  322 (345)
T ss_dssp             EE
T ss_pred             Ee
Confidence            74

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.58  E-value=1.1e-13  Score=115.60  Aligned_cols=225  Identities=17%  Similarity=0.209  Sum_probs=158.0

Q ss_pred             ccccCCCccc-ccCCCcccEEEec-cccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEE--------------
Q 042434          197 ISLYEDHCCG-RDQIPTETVQILT-EHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLK--------------  260 (517)
Q Consensus       197 ~~~~~~~~~~-~~~~~~~~~~~l~-~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~--------------  260 (517)
                      ++....+... |..........++ .|...|+.+.--|+ ..|.+-+.|+.+.+|++..+......              
T Consensus        29 ~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl  107 (323)
T KOG0322|consen   29 MSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSL  107 (323)
T ss_pred             hcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeecccccccccee
Confidence            3333333333 3334445566667 57789999998888 45778889999999987532110000              


Q ss_pred             --------EEe----------------------------ccCCCCEEEEEECC-CCC--eEEEEeCCCeEEEEECCCCcE
Q 042434          261 --------HTL----------------------------RSHQNPVSFVAWSP-DDT--KLLTCGNAEVLKLWDVETGIC  301 (517)
Q Consensus       261 --------~~~----------------------------~~h~~~v~~l~~s~-~~~--~l~s~~~dg~i~iwd~~~~~~  301 (517)
                              ..+                            .+..+.+.|..|.. ++.  ++++|-.+|.+.+||+.++..
T Consensus       108 ~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~  187 (323)
T KOG0322|consen  108 VKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDK  187 (323)
T ss_pred             ccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCce
Confidence                    000                            01134566666533 232  355677799999999999844


Q ss_pred             EE----------EeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC--CeeEeeeCcCCCceEEEEEccCCCEEE
Q 042434          302 KH----------TFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG--NEIKAWRGTRIPKVLDLAVTPDGENLI  369 (517)
Q Consensus       302 ~~----------~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~  369 (517)
                      +-          ....|..+|.++.+.+.-..=++|+.+..+..|.++-..  -++..........+..+.+-||++.++
T Consensus       188 ~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlA  267 (323)
T KOG0322|consen  188 IIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILA  267 (323)
T ss_pred             eeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEe
Confidence            33          334688999999998876666777777774455444442  223333333345788899999999999


Q ss_pred             EEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEc
Q 042434          370 SVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDV  422 (517)
Q Consensus       370 ~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~  422 (517)
                      +++.|+.|+||..++..  .....|...+++++|+|+...+++++.|++|.+|++
T Consensus       268 TAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  268 TAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             ecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            99999999999999988  566678899999999999999999999999999986

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.57  E-value=4.4e-13  Score=126.81  Aligned_cols=274  Identities=16%  Similarity=0.242  Sum_probs=201.1

Q ss_pred             cCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCC------------eeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCC
Q 042434          222 KNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDS------------KLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAE  289 (517)
Q Consensus       222 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~------------~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg  289 (517)
                      .....|++|+.+..|+|.|+.||.++|..+.+..            .+..-.++.+|...|.-+.|+.+.+.|-+...+|
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G   93 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG   93 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence            4567899999999999999999999999875432            2334467889999999999999999999999999


Q ss_pred             eEEEEECCCCcEEEEe--CCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeE--eeeCcCCCceEEEEEccCC
Q 042434          290 VLKLWDVETGICKHTF--GDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIK--AWRGTRIPKVLDLAVTPDG  365 (517)
Q Consensus       290 ~i~iwd~~~~~~~~~~--~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~  365 (517)
                      .|.||-+-.|.....+  ...++.|.+++|+.||..+.....||.  |.+-..+|+.+-  .+.+.   ....+.|++|.
T Consensus        94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGa--vIVGsvdGNRIwgKeLkg~---~l~hv~ws~D~  168 (1189)
T KOG2041|consen   94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGA--VIVGSVDGNRIWGKELKGQ---LLAHVLWSEDL  168 (1189)
T ss_pred             eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCC--EEEEeeccceecchhcchh---eccceeecccH
Confidence            9999998777543332  244678999999999999999999999  666666665542  22222   34568899999


Q ss_pred             CEEEEEeCCCcEEEEECCCce-------------EEeeccCCCeeEEEEc--------CCCCEEEEEeCCCeEEEEEcCC
Q 042434          366 ENLISVLSDKDIRILNLGTYA-------------ERVISEEHPITSLSVS--------VDCKNFIVNLNSQEIHMWDVAG  424 (517)
Q Consensus       366 ~~l~~~~~dg~i~i~d~~~~~-------------~~~~~~~~~i~~~~~s--------~~~~~l~~~~~d~~i~~~d~~~  424 (517)
                      +.++.+-.+|.+++||....-             ......+..+..+.|.        |+...++++..+|.+.+..-.+
T Consensus       169 ~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eN  248 (1189)
T KOG2041|consen  169 EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEN  248 (1189)
T ss_pred             HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcC
Confidence            999999999999999976431             1111223345566653        4778899999999998887655


Q ss_pred             CCccceEEeCcccCceEEEeecCCCCCcEEEEecCCC---------cEEEEecCCCceeEEecCCCCCeeEEEecCCCCc
Q 042434          425 KWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENS---------QIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPK  495 (517)
Q Consensus       425 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---------~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~  495 (517)
                      ...++..-.+     ..+.-..|+++|.+|++++.+.         .|.+|. .-|+.+.+++.....|++++|-..| .
T Consensus       249 D~~Pvv~dtg-----m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~g-L  321 (1189)
T KOG2041|consen  249 DPEPVVVDTG-----MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTG-L  321 (1189)
T ss_pred             CCCCeEEecc-----cEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCc-e
Confidence            5333333222     2245566799999999988652         566665 3478888999888999999998776 3


Q ss_pred             EEEEeeCCCcEEE
Q 042434          496 MLASASDDHTIRI  508 (517)
Q Consensus       496 ~l~s~~~dg~v~i  508 (517)
                      .++. .-|+.|.+
T Consensus       322 riA~-Avdsfiyf  333 (1189)
T KOG2041|consen  322 RIAI-AVDSFIYF  333 (1189)
T ss_pred             EEEE-EecceEEE
Confidence            3332 33445544

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.57  E-value=7.2e-13  Score=116.87  Aligned_cols=264  Identities=12%  Similarity=0.116  Sum_probs=184.4

Q ss_pred             ccCcEEEEEECCCC--CEEEEeeCCCcEEEEEecCCCeee---EEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEE
Q 042434          221 HKNEVWFVQFSNNG--EYLASSSSDCSAIIWKVLEDSKLT---LKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWD  295 (517)
Q Consensus       221 h~~~v~~~~~s~~~--~~l~t~~~dg~i~iw~~~~~~~~~---~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd  295 (517)
                      -...|..++|..++  ..+...+.|..+....+....-..   ...+......+|..++..  +..|++|-.+|.+.+|.
T Consensus        54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~  131 (412)
T KOG3881|consen   54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRH  131 (412)
T ss_pred             hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEe
Confidence            45567777776544  345555466666666654332111   112334456677777665  34788889999999999


Q ss_pred             CCCCc----EEEEeCCCCCceEEEEEeCCCC-eEEEeeCCCceeEEEEeCCCCeeEeeeCcC----------CCceEEEE
Q 042434          296 VETGI----CKHTFGDHGFIVSSCAWFPDSK-RLVCGSSDTEKGIFMCDCDGNEIKAWRGTR----------IPKVLDLA  360 (517)
Q Consensus       296 ~~~~~----~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~----------~~~i~~~~  360 (517)
                      .+.+.    ....+ .....+..+.-++... .+++|+..+...+.+||+.+. .+.|....          .-.++++.
T Consensus       132 ~k~~d~hss~l~~l-a~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~-~qiw~aKNvpnD~L~LrVPvW~tdi~  209 (412)
T KOG3881|consen  132 DKSGDLHSSKLIKL-ATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS-KQIWSAKNVPNDRLGLRVPVWITDIR  209 (412)
T ss_pred             ccCCccccccceee-ecCCceeeeccCCCCCceEecCchhcccceeeeecccc-eeeeeccCCCCccccceeeeeeccce
Confidence            87543    22222 2234556666666544 455588884444888888765 44444322          11467888


Q ss_pred             EccC--CCEEEEEeCCCcEEEEECCCce---EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCc
Q 042434          361 VTPD--GENLISVLSDKDIRILNLGTYA---ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGH  435 (517)
Q Consensus       361 ~~~~--~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~  435 (517)
                      |.+.  ...|++++.-+.+++||.+.+.   ..+.....+++++...|+++.++++..-+.+..||++++......+.+.
T Consensus       210 Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~  289 (412)
T KOG3881|consen  210 FLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI  289 (412)
T ss_pred             ecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCc
Confidence            9888  8899999999999999998766   4444567899999999999999999999999999999885555557777


Q ss_pred             ccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCC
Q 042434          436 SQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPK  492 (517)
Q Consensus       436 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~  492 (517)
                      .+....+.+   +|.+.++++++-|..++|+|+.+.+++.... -...++++.+.++
T Consensus       290 tGsirsih~---hp~~~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~~~  342 (412)
T KOG3881|consen  290 TGSIRSIHC---HPTHPVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLRDD  342 (412)
T ss_pred             cCCcceEEE---cCCCceEEeeccceeEEEeecccchhhhhhh-hhccccEEEecCC
Confidence            777555554   8899999999999999999999977765543 2345666666543

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.57  E-value=6.3e-13  Score=113.50  Aligned_cols=150  Identities=15%  Similarity=0.266  Sum_probs=109.8

Q ss_pred             EEEEECCCCCeEEEEeC----------CCeEEEEECCC-CcEEEEeC-CCCCceEEEEEeCCCCeEEEee--CCCceeEE
Q 042434          271 SFVAWSPDDTKLLTCGN----------AEVLKLWDVET-GICKHTFG-DHGFIVSSCAWFPDSKRLVCGS--SDTEKGIF  336 (517)
Q Consensus       271 ~~l~~s~~~~~l~s~~~----------dg~i~iwd~~~-~~~~~~~~-~~~~~v~~i~~~~~~~~l~~~~--~d~~v~i~  336 (517)
                      ..+.|+|+|++|+.-..          -|...+|.++. +.....+. ...++|.+++|+|+|+.|++..  .++.  +.
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~--v~   86 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAK--VT   86 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcc--cE
Confidence            46789999988765433          13455555522 23344443 2355799999999999887654  4454  88


Q ss_pred             EEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeC---CCcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeC
Q 042434          337 MCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLS---DKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLN  413 (517)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  413 (517)
                      +|+.++..+..+..   ..+..+.|+|+|+++++++.   .|.|.+||.++.+.........++.++|+|+|+++++++.
T Consensus        87 lyd~~~~~i~~~~~---~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdGr~~~ta~t  163 (194)
T PF08662_consen   87 LYDVKGKKIFSFGT---QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDATDVEWSPDGRYLATATT  163 (194)
T ss_pred             EEcCcccEeEeecC---CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCcEEEEEEcCCCCEEEEEEe
Confidence            88888776666543   36788999999999999875   4679999999887555555566899999999999999874


Q ss_pred             ------CCeEEEEEcCCC
Q 042434          414 ------SQEIHMWDVAGK  425 (517)
Q Consensus       414 ------d~~i~~~d~~~~  425 (517)
                            |+.++||+..+.
T Consensus       164 ~~r~~~dng~~Iw~~~G~  181 (194)
T PF08662_consen  164 SPRLRVDNGFKIWSFQGR  181 (194)
T ss_pred             ccceeccccEEEEEecCe
Confidence                  678899998653

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.57  E-value=4.7e-13  Score=116.00  Aligned_cols=279  Identities=19%  Similarity=0.313  Sum_probs=183.2

Q ss_pred             ccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCC--eeeEEEEeccCC------------CCEEEEEECCCC--CeEEE
Q 042434          221 HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDS--KLTLKHTLRSHQ------------NPVSFVAWSPDD--TKLLT  284 (517)
Q Consensus       221 h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~--~~~~~~~~~~h~------------~~v~~l~~s~~~--~~l~s  284 (517)
                      ..+-|.++.|...|.+||||..+|.|.++.-....  .......++.|.            ..|..+.|.+++  ..++.
T Consensus        24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl  103 (433)
T KOG1354|consen   24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL  103 (433)
T ss_pred             hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence            45678999999999999999999999999654322  233455566664            467889999865  45666


Q ss_pred             EeCCCeEEEEECCCCcEEE-Ee----CCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEE
Q 042434          285 CGNAEVLKLWDVETGICKH-TF----GDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDL  359 (517)
Q Consensus       285 ~~~dg~i~iwd~~~~~~~~-~~----~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~  359 (517)
                      .+.|.+|++|.+....... .+    +.....++++..      .+.+..+-.   .    ...+.+.+...|.-.|.++
T Consensus       104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~------p~~~~~~~~---v----ea~prRv~aNaHtyhiNSI  170 (433)
T KOG1354|consen  104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRL------PVEGRHDLE---V----EASPRRVYANAHTYHINSI  170 (433)
T ss_pred             ecCCcceeeeeeeccccccccccccccCCCCccceeec------eeeccccce---e----eeeeeeeccccceeEeeee
Confidence            7889999999986543222 00    111222222221      111111111   0    1123344455555579999


Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCce----EEee-cc-----CCCeeEEEEcCC-CCEEEEEeCCCeEEEEEcCCC---
Q 042434          360 AVTPDGENLISVLSDKDIRILNLGTYA----ERVI-SE-----EHPITSLSVSVD-CKNFIVNLNSQEIHMWDVAGK---  425 (517)
Q Consensus       360 ~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~-~~-----~~~i~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~---  425 (517)
                      .++.|+..++++ .|=.|.+|++.-..    ..-+ ++     ..-|++..|+|. ...++.++..|+|++.|++..   
T Consensus       171 S~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLC  249 (433)
T KOG1354|consen  171 SVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALC  249 (433)
T ss_pred             eecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhh
Confidence            999999988876 56678999886433    1111 11     225788999995 567888889999999999842   


Q ss_pred             --CccceEEe-------CcccCceEEEeecCCCCCcEEEEecCCCcEEEEec-CCCceeEEecCCCC------------C
Q 042434          426 --WEKPFKYT-------GHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNR-RNSKPIEILSGHSM------------T  483 (517)
Q Consensus       426 --~~~~~~~~-------~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~h~~------------~  483 (517)
                        .......+       ........|.-+.|+++|+|+++-+. -+|++||+ ...+++.+++-|..            .
T Consensus       250 d~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~  328 (433)
T KOG1354|consen  250 DAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDA  328 (433)
T ss_pred             cchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccc
Confidence              11111111       11122334566677999999998653 58999999 45678888776642            2


Q ss_pred             e---eEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434          484 V---NCVSWNPKRPKMLASASDDHTIRIWGPCQSS  515 (517)
Q Consensus       484 v---~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~  515 (517)
                      |   ..++|+.++ ..++|||....+++++...|.
T Consensus       329 IfdKFec~~sg~~-~~v~TGsy~n~frvf~~~~gs  362 (433)
T KOG1354|consen  329 IFDKFECSWSGND-SYVMTGSYNNVFRVFNLARGS  362 (433)
T ss_pred             hhheeEEEEcCCc-ceEecccccceEEEecCCCCc
Confidence            2   457899888 699999999999999976654

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.56  E-value=5.2e-13  Score=114.00  Aligned_cols=157  Identities=16%  Similarity=0.263  Sum_probs=114.1

Q ss_pred             EEEEEeCCCCeEEEeeC----------CCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEE--eCCCcEEEE
Q 042434          313 SSCAWFPDSKRLVCGSS----------DTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISV--LSDKDIRIL  380 (517)
Q Consensus       313 ~~i~~~~~~~~l~~~~~----------d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~dg~i~i~  380 (517)
                      ..+.|+|+|.+|++-..          -+...++.++..+.....+.....++|.+++|+|+|+.+++.  ..++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            45789999987766433          123457777777777766666555679999999999987654  456799999


Q ss_pred             ECCCceEEeeccCCCeeEEEEcCCCCEEEEEeC---CCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEe
Q 042434          381 NLGTYAERVISEEHPITSLSVSVDCKNFIVNLN---SQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASG  457 (517)
Q Consensus       381 d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  457 (517)
                      |++...... .....+..+.|+|+|+++++++.   .|.+.+||.++. ..+.... |.    .+..+.|+|||++++++
T Consensus        89 d~~~~~i~~-~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~-~~i~~~~-~~----~~t~~~WsPdGr~~~ta  161 (194)
T PF08662_consen   89 DVKGKKIFS-FGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK-KKISTFE-HS----DATDVEWSPDGRYLATA  161 (194)
T ss_pred             cCcccEeEe-ecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC-EEeeccc-cC----cEEEEEEcCCCCEEEEE
Confidence            997443333 34567889999999999999874   467999999854 3333332 21    24567789999999998


Q ss_pred             cC------CCcEEEEecCCCceeEEe
Q 042434          458 SE------NSQIYIWNRRNSKPIEIL  477 (517)
Q Consensus       458 ~~------dg~i~iwd~~~~~~~~~~  477 (517)
                      +.      |+.++||+.. |+.+...
T Consensus       162 ~t~~r~~~dng~~Iw~~~-G~~l~~~  186 (194)
T PF08662_consen  162 TTSPRLRVDNGFKIWSFQ-GRLLYKK  186 (194)
T ss_pred             EeccceeccccEEEEEec-CeEeEec
Confidence            74      6789999984 7766554

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.56  E-value=2.1e-12  Score=126.36  Aligned_cols=207  Identities=18%  Similarity=0.225  Sum_probs=147.2

Q ss_pred             CcccEEEeccccCcEEEEEECCCCCEEEEeeCC---CcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEE-Ee
Q 042434          211 PTETVQILTEHKNEVWFVQFSNNGEYLASSSSD---CSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLT-CG  286 (517)
Q Consensus       211 ~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d---g~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s-~~  286 (517)
                      .+...+.+..+...+.+.+|+|||++|+.++.+   ..|++|++.++...    .+..+.+.+.+++|+|||+.|+. .+
T Consensus       178 ~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~----~~~~~~~~~~~~~~spDg~~l~~~~~  253 (417)
T TIGR02800       178 DGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE----KVASFPGMNGAPAFSPDGSKLAVSLS  253 (417)
T ss_pred             CCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE----EeecCCCCccceEECCCCCEEEEEEC
Confidence            345556677788889999999999999987654   47999999765331    23335566778999999987764 44


Q ss_pred             CCC--eEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeC-CCceeEEEEeCCCCeeEeeeCcCCCceEEEEEcc
Q 042434          287 NAE--VLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSS-DTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTP  363 (517)
Q Consensus       287 ~dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~  363 (517)
                      .++  .|.+||+.++... .+..+........|+|||+.|+.++. ++...||.++..+.....+.... .......|+|
T Consensus       254 ~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~-~~~~~~~~sp  331 (417)
T TIGR02800       254 KDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRG-GYNASPSWSP  331 (417)
T ss_pred             CCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC-CCccCeEECC
Confidence            444  5889999887654 34344445567789999998876654 45556999998876655444332 3567789999


Q ss_pred             CCCEEEEEeCCC---cEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCC---eEEEEEcC
Q 042434          364 DGENLISVLSDK---DIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQ---EIHMWDVA  423 (517)
Q Consensus       364 ~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~---~i~~~d~~  423 (517)
                      +|++++.++.++   .|.+||+.+................|+|+++.++..+.++   .+.+.+..
T Consensus       332 dg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~  397 (417)
T TIGR02800       332 DGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD  397 (417)
T ss_pred             CCCEEEEEEccCCceEEEEEeCCCCCeEEccCCCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence            999999888776   7999999886644444333455678999999988877654   34455543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=4.1e-12  Score=124.46  Aligned_cols=208  Identities=15%  Similarity=0.199  Sum_probs=144.4

Q ss_pred             CcccEEEeccccCcEEEEEECCCCCEEEEeeCC---CcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEE-Ee
Q 042434          211 PTETVQILTEHKNEVWFVQFSNNGEYLASSSSD---CSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLT-CG  286 (517)
Q Consensus       211 ~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d---g~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s-~~  286 (517)
                      .+...+.+..+...+...+|||||+.|+..+.+   ..|.+|++.++.. .   .+....+.+...+|+|||+.|+. .+
T Consensus       187 ~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~-~---~l~~~~g~~~~~~~SpDG~~la~~~~  262 (430)
T PRK00178        187 DGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR-E---QITNFEGLNGAPAWSPDGSKLAFVLS  262 (430)
T ss_pred             CCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE-E---EccCCCCCcCCeEECCCCCEEEEEEc
Confidence            344556676788899999999999999877643   3588889876543 2   22233445567899999998874 44


Q ss_pred             CCC--eEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeC-CCceeEEEEeCCCCeeEeeeCcCCCceEEEEEcc
Q 042434          287 NAE--VLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSS-DTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTP  363 (517)
Q Consensus       287 ~dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~  363 (517)
                      .+|  .|.+||+.+++.. .+..+........|+|||+.++..+. ++...++.++..+.....+.... .......|+|
T Consensus       263 ~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~-~~~~~~~~Sp  340 (430)
T PRK00178        263 KDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVG-NYNARPRLSA  340 (430)
T ss_pred             cCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC-CCccceEECC
Confidence            455  6888899888654 34455555677899999998876654 55667999998766554443222 2344578999


Q ss_pred             CCCEEEEEeCCC---cEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCC---CeEEEEEcCC
Q 042434          364 DGENLISVLSDK---DIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNS---QEIHMWDVAG  424 (517)
Q Consensus       364 ~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---~~i~~~d~~~  424 (517)
                      +|+.++..+.++   .|.++|+.++...............|+|+|+.++..+.+   ..+.++++.+
T Consensus       341 dg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g  407 (430)
T PRK00178        341 DGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSING  407 (430)
T ss_pred             CCCEEEEEEccCCceEEEEEECCCCCEEEccCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence            999988776533   588899988774444433344467899999999887654   2466777654

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.55  E-value=2.2e-11  Score=104.82  Aligned_cols=270  Identities=11%  Similarity=0.137  Sum_probs=172.6

Q ss_pred             cEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCC--EEEEEECCCCCeEE-EEeCC------CeEEEE
Q 042434          224 EVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNP--VSFVAWSPDDTKLL-TCGNA------EVLKLW  294 (517)
Q Consensus       224 ~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~--v~~l~~s~~~~~l~-s~~~d------g~i~iw  294 (517)
                      ....++|+.|..-++.|..+| .+||+.+.   +........+.+.  +.-+-|  ..++++ +||.+      ..|.||
T Consensus         7 ~~lsvs~NQD~ScFava~~~G-friyn~~P---~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIW   80 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDP---FKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIW   80 (346)
T ss_pred             ceeEEEEccCCceEEEEecCc-eEEEecCc---hhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEE
Confidence            344599999999999988776 79999853   2221111222222  222222  234554 34333      379999


Q ss_pred             ECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC--CeeEeeeCcCC-CceEEEEEccCCCEEEE-
Q 042434          295 DVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG--NEIKAWRGTRI-PKVLDLAVTPDGENLIS-  370 (517)
Q Consensus       295 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~--~~~~~~~~~~~-~~i~~~~~~~~~~~l~~-  370 (517)
                      |=...+++.++ ....+|.++.+.++  .|++.-.. .  |++|.-..  +.+..+..... ....+++-+.+...|+. 
T Consensus        81 DD~k~~~i~el-~f~~~I~~V~l~r~--riVvvl~~-~--I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafP  154 (346)
T KOG2111|consen   81 DDLKERCIIEL-SFNSEIKAVKLRRD--RIVVVLEN-K--IYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFP  154 (346)
T ss_pred             ecccCcEEEEE-EeccceeeEEEcCC--eEEEEecC-e--EEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcC
Confidence            96667777777 56788999999865  56655444 3  66666542  33333332221 12333333333334443 


Q ss_pred             EeCCCcEEEEECCCce----EEeeccCCCeeEEEEcCCCCEEEEEeCCCe-EEEEEcCCCCccceEEeCcccCceEEEee
Q 042434          371 VLSDKDIRILNLGTYA----ERVISEEHPITSLSVSVDCKNFIVNLNSQE-IHMWDVAGKWEKPFKYTGHSQNKYVIRSC  445 (517)
Q Consensus       371 ~~~dg~i~i~d~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~-i~~~d~~~~~~~~~~~~~~~~~~~~i~~~  445 (517)
                      |-.-|.|.|-|+...+    .....|...|.+++++.+|..+++++..|+ |++||..++ ..+..+..-.. ...+.++
T Consensus       155 g~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g-~~l~E~RRG~d-~A~iy~i  232 (346)
T KOG2111|consen  155 GFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG-TLLQELRRGVD-RADIYCI  232 (346)
T ss_pred             CCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC-cEeeeeecCCc-hheEEEE
Confidence            3456899999997654    466789999999999999999999999996 799999888 45554442222 2346778


Q ss_pred             cCCCCCcEEEEecCCCcEEEEecCCCceeE------------------------EecCCCCCeeEEEecCCCCcEEEEee
Q 042434          446 FGGLDGTFIASGSENSQIYIWNRRNSKPIE------------------------ILSGHSMTVNCVSWNPKRPKMLASAS  501 (517)
Q Consensus       446 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~------------------------~~~~h~~~v~~v~~~~~~~~~l~s~~  501 (517)
                      .|||++.+|+++|+.|++.||.++....-.                        .+.-..+...-++|..+. +.++..+
T Consensus       233 aFSp~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~-nsvi~i~  311 (346)
T KOG2111|consen  233 AFSPNSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSET-NTVIAIC  311 (346)
T ss_pred             EeCCCccEEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCC-CeEEEEE
Confidence            889999999999999999999876432111                        111123455566776664 3566666


Q ss_pred             CCCcEEE
Q 042434          502 DDHTIRI  508 (517)
Q Consensus       502 ~dg~v~i  508 (517)
                      .||+-+=
T Consensus       312 ~Dgsy~k  318 (346)
T KOG2111|consen  312 ADGSYYK  318 (346)
T ss_pred             eCCcEEE
Confidence            7776553

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=4.5e-12  Score=123.57  Aligned_cols=207  Identities=20%  Similarity=0.219  Sum_probs=138.8

Q ss_pred             cccEEEeccccCcEEEEEECCCCCEEEEeeC-CC--cEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEE-EeC
Q 042434          212 TETVQILTEHKNEVWFVQFSNNGEYLASSSS-DC--SAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLT-CGN  287 (517)
Q Consensus       212 ~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~-dg--~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s-~~~  287 (517)
                      +...+.+..+...+.+..|||||+.|+..+. ++  .|.+||+.++.. ..+..+   .+.....+|+|||+.|+. .+.
T Consensus       207 G~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~-~~lt~~---~g~~~~~~wSPDG~~La~~~~~  282 (448)
T PRK04792        207 GYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR-EKVTSF---PGINGAPRFSPDGKKLALVLSK  282 (448)
T ss_pred             CCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe-EEecCC---CCCcCCeeECCCCCEEEEEEeC
Confidence            3444556667788899999999999987654 33  577888865532 222222   333457899999998875 455


Q ss_pred             CC--eEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeC-CCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccC
Q 042434          288 AE--VLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSS-DTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPD  364 (517)
Q Consensus       288 dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  364 (517)
                      +|  .|.++|+.+++.. .+..+.......+|+|||+.++..+. ++...+|.++..+.....+.... .......|+||
T Consensus       283 ~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g-~~~~~~~~SpD  360 (448)
T PRK04792        283 DGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEG-EQNLGGSITPD  360 (448)
T ss_pred             CCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCC-CCCcCeeECCC
Confidence            66  4888898887654 44455556678899999998876654 56667999998866555443221 12345689999


Q ss_pred             CCEEEEEeCC-C--cEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCC---eEEEEEcCC
Q 042434          365 GENLISVLSD-K--DIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQ---EIHMWDVAG  424 (517)
Q Consensus       365 ~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~---~i~~~d~~~  424 (517)
                      |+.++..+.+ +  .|.++|+.++...............|+|+|+.++..+.++   .+++++..+
T Consensus       361 G~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G  426 (448)
T PRK04792        361 GRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG  426 (448)
T ss_pred             CCEEEEEEecCCceEEEEEECCCCCeEEccCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence            9988776553 3  4666788777643333222334568999999988766543   366777654

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.53  E-value=2.1e-12  Score=119.34  Aligned_cols=244  Identities=18%  Similarity=0.237  Sum_probs=166.6

Q ss_pred             cCCCCEEEEEECCCCCeEE-EEeCCCeEEEEECCCCcEEEEeCCC--CCceEEEEEeCCCCeEEEeeCCCceeEEEEeCC
Q 042434          265 SHQNPVSFVAWSPDDTKLL-TCGNAEVLKLWDVETGICKHTFGDH--GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD  341 (517)
Q Consensus       265 ~h~~~v~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~  341 (517)
                      .|...-+.|..+|||+|++ +|.+.-.|++||+.+-...  |..|  ...|.-.-.+.|-...+.-..|.+  |-+....
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLsDD~SK~v~L~~DR~--IefHak~  124 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILSDDYSKSVFLQNDRT--IEFHAKY  124 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceee--eeecccccceeEEEeccchhhheEeecCce--eeehhhc
Confidence            4677889999999999875 5666779999999765443  3333  344444455555555555556665  2222222


Q ss_pred             CCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEE
Q 042434          342 GNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHM  419 (517)
Q Consensus       342 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~  419 (517)
                      |. -.....+.  .-.+++++.-.--+++++....|+-+++..+.  .........++++.+++....+++|+.+|.|.+
T Consensus       125 G~-hy~~RIP~--~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEf  201 (703)
T KOG2321|consen  125 GR-HYRTRIPK--FGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEF  201 (703)
T ss_pred             Ce-eeeeecCc--CCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEE
Confidence            21 11111111  34566776555556677777789999999887  334445578999999999999999999999999


Q ss_pred             EEcCCCCccceEEeCc------cc--CceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEec-CCCCCeeEEEec
Q 042434          420 WDVAGKWEKPFKYTGH------SQ--NKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILS-GHSMTVNCVSWN  490 (517)
Q Consensus       420 ~d~~~~~~~~~~~~~~------~~--~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~v~~~  490 (517)
                      ||.+.. ..+..+...      ..  ....++++.|+.+|-.+++|+.+|.++|||+++.+++..-. +..-+|..+.|.
T Consensus       202 wDpR~k-srv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~  280 (703)
T KOG2321|consen  202 WDPRDK-SRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQ  280 (703)
T ss_pred             ecchhh-hhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeeccc
Confidence            999876 333333211      11  12336677778889999999999999999999998876543 235688999998


Q ss_pred             CCCC-cEEEEeeCCCcEEEeCCCCCCCC
Q 042434          491 PKRP-KMLASASDDHTIRIWGPCQSSEV  517 (517)
Q Consensus       491 ~~~~-~~l~s~~~dg~v~iw~~~~~~~v  517 (517)
                      +.+. ..++| .+...++|||-.+|+.+
T Consensus       281 ~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~  307 (703)
T KOG2321|consen  281 DTDQQNKVVS-MDKRILKIWDECTGKPM  307 (703)
T ss_pred             ccCCCceEEe-cchHHhhhcccccCCce
Confidence            7632 23444 34568999999998863

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.52  E-value=1.4e-10  Score=102.18  Aligned_cols=270  Identities=12%  Similarity=0.112  Sum_probs=175.0

Q ss_pred             CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCC---CeEEEEECCC--CcEEE--EeCCCCCceEEE
Q 042434          243 DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNA---EVLKLWDVET--GICKH--TFGDHGFIVSSC  315 (517)
Q Consensus       243 dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---g~i~iwd~~~--~~~~~--~~~~~~~~v~~i  315 (517)
                      +.-|++|++.+.........+-.+.+.++-++|+|+++.|.++..+   |.|..|.++.  |+...  .......+.+.+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            4569999997433222222334567888999999999999888554   6777777654  54332  222334445889


Q ss_pred             EEeCCCCeEEEeeCC-CceeEEEEeCCCCee---EeeeC--------cCCCceEEEEEccCCCEEEEEeC-CCcEEEEEC
Q 042434          316 AWFPDSKRLVCGSSD-TEKGIFMCDCDGNEI---KAWRG--------TRIPKVLDLAVTPDGENLISVLS-DKDIRILNL  382 (517)
Q Consensus       316 ~~~~~~~~l~~~~~d-~~v~i~~~~~~~~~~---~~~~~--------~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~  382 (517)
                      ++++++++++++... |.+.++-....|...   .....        ...+.+....+.|+++++++.+- ...|.+|++
T Consensus        95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~  174 (346)
T COG2706          95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL  174 (346)
T ss_pred             EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence            999999999988764 565555444443221   11110        01123888999999999888764 347999999


Q ss_pred             CCce-----EEeeccCCCeeEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCccceEEeCc------ccCceEEEeecCCCC
Q 042434          383 GTYA-----ERVISEEHPITSLSVSVDCKNFIVNLN-SQEIHMWDVAGKWEKPFKYTGH------SQNKYVIRSCFGGLD  450 (517)
Q Consensus       383 ~~~~-----~~~~~~~~~i~~~~~s~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~------~~~~~~i~~~~~s~~  450 (517)
                      ..+.     ......+.....+.|+|++++..+.+. +++|.+|...........+..+      -........+..++|
T Consensus       175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d  254 (346)
T COG2706         175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD  254 (346)
T ss_pred             ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence            8765     233356667899999999999887766 8999999987642222222211      111222344455899


Q ss_pred             CcEEEEecCC-CcEEEEecCC--Cce--eEEecCCCCCeeEEEecCCCCcEEEEee-CCCcEEEeCCCC
Q 042434          451 GTFIASGSEN-SQIYIWNRRN--SKP--IEILSGHSMTVNCVSWNPKRPKMLASAS-DDHTIRIWGPCQ  513 (517)
Q Consensus       451 ~~~l~~~~~d-g~i~iwd~~~--~~~--~~~~~~h~~~v~~v~~~~~~~~~l~s~~-~dg~v~iw~~~~  513 (517)
                      |++|+++... ..|.+|.+..  +++  +.....+....++..++|++ .+|+++. ++..|.+|..+.
T Consensus       255 GrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g-~~Liaa~q~sd~i~vf~~d~  322 (346)
T COG2706         255 GRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSG-RFLIAANQKSDNITVFERDK  322 (346)
T ss_pred             CCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCC-CEEEEEccCCCcEEEEEEcC
Confidence            9999987643 3677776653  332  22333455567899999999 4555555 455788887654

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.52  E-value=1e-12  Score=120.53  Aligned_cols=190  Identities=17%  Similarity=0.212  Sum_probs=126.3

Q ss_pred             CCCCEEEEeeCCCcEEEEEecCCCeeeEE--EEeccCCCCEEEEEECCCC-CeEEEEeCCCeEEEEECCCCcEEEEeCCC
Q 042434          232 NNGEYLASSSSDCSAIIWKVLEDSKLTLK--HTLRSHQNPVSFVAWSPDD-TKLLTCGNAEVLKLWDVETGICKHTFGDH  308 (517)
Q Consensus       232 ~~~~~l~t~~~dg~i~iw~~~~~~~~~~~--~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  308 (517)
                      |.+--|..|-.-|.|.+.|.... .+..+  ....-....|+|+.|-|.+ ..++++-.+|.+.+||...-      .+.
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~-~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~------~~~  255 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINF-EVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV------CGA  255 (636)
T ss_pred             CCCcceEEeeccCceEEecchhh-HHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccc------ccC
Confidence            45666777777888988886431 11100  0011124789999999854 55666678999999986210      011


Q ss_pred             CCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--
Q 042434          309 GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--  386 (517)
Q Consensus       309 ~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--  386 (517)
                      ..  .+-...+++..+......+.       ...+++..|.... +.|..++|+|||++|++.+.||.++|||..+.+  
T Consensus       256 t~--p~~~~~k~~~~f~i~t~ksk-------~~rNPv~~w~~~~-g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLl  325 (636)
T KOG2394|consen  256 TA--PSYQALKDGDQFAILTSKSK-------KTRNPVARWHIGE-GSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELL  325 (636)
T ss_pred             CC--CcccccCCCCeeEEeeeecc-------ccCCccceeEecc-ccccceeEcCCCceEEEEecCceEEEeeccHHHHH
Confidence            11  11122345555554432221       1124444454444 379999999999999999999999999998876  


Q ss_pred             EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCc
Q 042434          387 ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNK  439 (517)
Q Consensus       387 ~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~  439 (517)
                      ......-+...|++|+|||+++++|+.|.-|.+|.+... +.+..-.+|...+
T Consensus       326 g~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~er-RVVARGqGHkSWV  377 (636)
T KOG2394|consen  326 GVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEER-RVVARGQGHKSWV  377 (636)
T ss_pred             HHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccc-eEEEeccccccce
Confidence            333344567899999999999999999999999999766 5555555665543

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.49  E-value=3.1e-10  Score=100.09  Aligned_cols=272  Identities=14%  Similarity=0.165  Sum_probs=178.8

Q ss_pred             eccccCcEEEEEECCCCCEEEEeeC---CCcEEEEEecCC-CeeeEEEEeccCCCCEEEEEECCCCCeEEEEeC-CCeEE
Q 042434          218 LTEHKNEVWFVQFSNNGEYLASSSS---DCSAIIWKVLED-SKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGN-AEVLK  292 (517)
Q Consensus       218 l~~h~~~v~~~~~s~~~~~l~t~~~---dg~i~iw~~~~~-~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-dg~i~  292 (517)
                      +-.+.+.++-++|+|+++.|.++-.   +|.|.-|.++.. ..+..+........+-+.++++++|++++++.. .|.|.
T Consensus        35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~  114 (346)
T COG2706          35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVS  114 (346)
T ss_pred             hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEE
Confidence            3457788999999999999988754   577888888743 455555544444455589999999999999876 46899


Q ss_pred             EEECCC-CcEEEE--eCCCCCc----------eEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEee---eCcCCCce
Q 042434          293 LWDVET-GICKHT--FGDHGFI----------VSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAW---RGTRIPKV  356 (517)
Q Consensus       293 iwd~~~-~~~~~~--~~~~~~~----------v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~---~~~~~~~i  356 (517)
                      ++-+.. |.....  ...|.+.          +.+..+.|+++++++.+-. .-+|+.|+.....+...   ........
T Consensus       115 v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG-~Dri~~y~~~dg~L~~~~~~~v~~G~GP  193 (346)
T COG2706         115 VYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG-TDRIFLYDLDDGKLTPADPAEVKPGAGP  193 (346)
T ss_pred             EEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC-CceEEEEEcccCccccccccccCCCCCc
Confidence            999855 433221  1133333          7888999999998887542 23377777764333221   22333467


Q ss_pred             EEEEEccCCCEEEEEe-CCCcEEEEECCCc--eEE----------eeccCCCeeEEEEcCCCCEEEEEeC-CCeEEEEEc
Q 042434          357 LDLAVTPDGENLISVL-SDKDIRILNLGTY--AER----------VISEEHPITSLSVSVDCKNFIVNLN-SQEIHMWDV  422 (517)
Q Consensus       357 ~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~--~~~----------~~~~~~~i~~~~~s~~~~~l~~~~~-d~~i~~~d~  422 (517)
                      +.|.|+|++++..+.. -+++|.+|.....  +..          .+........+.+++||++|.++.. ...|.+|.+
T Consensus       194 RHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V  273 (346)
T COG2706         194 RHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSV  273 (346)
T ss_pred             ceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEE
Confidence            8899999999877665 4889999988763  211          1223456788999999999998866 347888887


Q ss_pred             CCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCC-cEEEEec--CCCceeEEec-CCCCCeeEEEec
Q 042434          423 AGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENS-QIYIWNR--RNSKPIEILS-GHSMTVNCVSWN  490 (517)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~i~iwd~--~~~~~~~~~~-~h~~~v~~v~~~  490 (517)
                      ....................+...++++|++|++++.++ .|.+|.+  .+|++-.... .......||.|.
T Consensus       274 ~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~  345 (346)
T COG2706         274 DPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL  345 (346)
T ss_pred             cCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence            544232222222222222234444588999999988775 6777755  4555443332 233445566654

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.49  E-value=2.1e-11  Score=111.45  Aligned_cols=287  Identities=16%  Similarity=0.293  Sum_probs=179.6

Q ss_pred             CCCcccEEEe-ccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeC
Q 042434          209 QIPTETVQIL-TEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGN  287 (517)
Q Consensus       209 ~~~~~~~~~l-~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~  287 (517)
                      ..+....... ....-++..++|||.|.+|++.... .|.+|.-....   .+..+.  ...|..+.|+|.+++|.+=+.
T Consensus        18 ~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~---~l~~~~--~~~V~~~~fSP~~kYL~tw~~   91 (561)
T COG5354          18 NSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKA---KLVRFR--HPDVKYLDFSPNEKYLVTWSR   91 (561)
T ss_pred             cCccccccccccccCcchhheeecCcchheehhhcc-ceEEccccchh---heeeee--cCCceecccCcccceeeeecc
Confidence            3333333333 3367789999999999999998765 48999875443   222222  356999999999999998654


Q ss_pred             CC---------------eEEEEECCCCcEEEEeCCCCCc--eE-EEEEeCCCCeEEEeeCCCceeEEEEeCCCC-eeEee
Q 042434          288 AE---------------VLKLWDVETGICKHTFGDHGFI--VS-SCAWFPDSKRLVCGSSDTEKGIFMCDCDGN-EIKAW  348 (517)
Q Consensus       288 dg---------------~i~iwd~~~~~~~~~~~~~~~~--v~-~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~-~~~~~  348 (517)
                      .+               .+.+||+.+|..+..+.....+  .+ -+.|+-+.++.+--..+.   +++++...+ ....+
T Consensus        92 ~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~s---l~i~e~t~n~~~~p~  168 (561)
T COG5354          92 EPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSS---LYIHEITDNIEEHPF  168 (561)
T ss_pred             CCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCe---EEEEecCCccccCch
Confidence            43               4999999999999888765544  44 567777666544332221   333332100 00000


Q ss_pred             eCcCCCceE-------------------------------------------------EEEEccCCCEEEEEeC------
Q 042434          349 RGTRIPKVL-------------------------------------------------DLAVTPDGENLISVLS------  373 (517)
Q Consensus       349 ~~~~~~~i~-------------------------------------------------~~~~~~~~~~l~~~~~------  373 (517)
                      .......+.                                                 .+.|.+.|+++++-..      
T Consensus       169 ~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksn  248 (561)
T COG5354         169 KNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSN  248 (561)
T ss_pred             hhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecc
Confidence            000001122                                                 3455556664432211      


Q ss_pred             -----CCcEEEEECCCceEEee-ccCCCeeEEEEcCCCCEEEEEe--CCCeEEEEEcCCCCccceEEeCcccCceEEEee
Q 042434          374 -----DKDIRILNLGTYAERVI-SEEHPITSLSVSVDCKNFIVNL--NSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSC  445 (517)
Q Consensus       374 -----dg~i~i~d~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~  445 (517)
                           ...++++++........ ...++|..++|.|.++.+++.+  .+..+.++|+++.  ....+  ..+.   -...
T Consensus       249 KsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~--Pe~~---rNT~  321 (561)
T COG5354         249 KSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYF--PEQK---RNTI  321 (561)
T ss_pred             cceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc--eEEec--CCcc---cccc
Confidence                 23466666665443222 5578899999999988877665  5778999999874  22222  2222   2234


Q ss_pred             cCCCCCcEEEEecCC---CcEEEEecCCCceeE-EecCCCCCeeEEEecCCCCcEEEEee------CCCcEEEeCCCCC
Q 042434          446 FGGLDGTFIASGSEN---SQIYIWNRRNSKPIE-ILSGHSMTVNCVSWNPKRPKMLASAS------DDHTIRIWGPCQS  514 (517)
Q Consensus       446 ~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~-~~~~h~~~v~~v~~~~~~~~~l~s~~------~dg~v~iw~~~~~  514 (517)
                      .|+|.+++++.++.|   |.|-+||......+. .+.+.  ...-+.|+|++ .++.+..      .|..|.||++...
T Consensus       322 ~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~-qF~~~~~ts~k~~~Dn~i~l~~v~g~  397 (561)
T COG5354         322 FFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDG-QFYDTDTTSEKLRVDNSIKLWDVYGA  397 (561)
T ss_pred             cccCcccEEEEecCCccccceEEeccCCceEEEEEeecC--CceEeeccCCc-eEEEecCCCcccccCcceEEEEecCc
Confidence            569999999998776   689999987654443 55543  34556899999 5655543      3788999998754

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=3.6e-11  Score=116.33  Aligned_cols=209  Identities=16%  Similarity=0.151  Sum_probs=135.7

Q ss_pred             cccEEEeccccCcEEEEEECCCCCEE---EEeeCCC--cEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEe
Q 042434          212 TETVQILTEHKNEVWFVQFSNNGEYL---ASSSSDC--SAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCG  286 (517)
Q Consensus       212 ~~~~~~l~~h~~~v~~~~~s~~~~~l---~t~~~dg--~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~  286 (517)
                      +...+.+......+.+-+|||||+.+   ++...+|  .|.+.++.++.. ..+..   ..+.....+|+|||+.|+..+
T Consensus       174 G~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~-~~lt~---~~g~~~~p~wSPDG~~Laf~s  249 (428)
T PRK01029        174 GQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG-KKILA---LQGNQLMPTFSPRKKLLAFIS  249 (428)
T ss_pred             CCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc-eEeec---CCCCccceEECCCCCEEEEEE
Confidence            34445566566777888999999752   2343444  466667765533 22222   344556789999999888655


Q ss_pred             C-CC----eEEEEECCCC---cEEEEeCCCCCceEEEEEeCCCCeEEEee-CCCceeEEEEeCC--CCeeEeeeCcCCCc
Q 042434          287 N-AE----VLKLWDVETG---ICKHTFGDHGFIVSSCAWFPDSKRLVCGS-SDTEKGIFMCDCD--GNEIKAWRGTRIPK  355 (517)
Q Consensus       287 ~-dg----~i~iwd~~~~---~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~d~~v~i~~~~~~--~~~~~~~~~~~~~~  355 (517)
                      . +|    .+.+|++.++   +...............+|+|||+.|+..+ .+|...+|.++..  +.....+.... ..
T Consensus       250 ~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~-~~  328 (428)
T PRK01029        250 DRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKY-RN  328 (428)
T ss_pred             CCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCC-CC
Confidence            3 22    3455777653   33333323333456789999999887765 4676678888764  23333333322 35


Q ss_pred             eEEEEEccCCCEEEEEeCC---CcEEEEECCCceEEeec-cCCCeeEEEEcCCCCEEEEEeC---CCeEEEEEcCCC
Q 042434          356 VLDLAVTPDGENLISVLSD---KDIRILNLGTYAERVIS-EEHPITSLSVSVDCKNFIVNLN---SQEIHMWDVAGK  425 (517)
Q Consensus       356 i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~---d~~i~~~d~~~~  425 (517)
                      +....|+|||+.++..+.+   ..|.+||+.+++..... ....+....|+|||+.++....   ...|+++|+.++
T Consensus       329 ~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g  405 (428)
T PRK01029        329 SSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITK  405 (428)
T ss_pred             ccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence            6788999999988876543   36999999888743333 3346778999999998876543   346888888765

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.47  E-value=2e-11  Score=120.91  Aligned_cols=150  Identities=19%  Similarity=0.303  Sum_probs=130.7

Q ss_pred             EEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEE-EeC
Q 042434          228 VQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKH-TFG  306 (517)
Q Consensus       228 ~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~  306 (517)
                      +.++++.-++++|+.-+.|.+|+....+.   ...+.+|.+.|.++.|+.||.++++.|.|.++++|++++++... ..-
T Consensus       139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~---p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~f  215 (967)
T KOG0974|consen  139 IGDSAEELYIASGSVFGEIIVWKPHEDNK---PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGF  215 (967)
T ss_pred             EeccCcEEEEEeccccccEEEEeccccCC---cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccc
Confidence            34577778999999999999999973322   12688999999999999999999999999999999999988765 444


Q ss_pred             CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCC
Q 042434          307 DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGT  384 (517)
Q Consensus       307 ~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  384 (517)
                      +|...|+.+.|.|+  .+++++.|.+  ...|+..+..+..+..+....+..++..++....++++.|+.+++||+..
T Consensus       216 gHsaRvw~~~~~~n--~i~t~gedct--crvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  216 GHSARVWACCFLPN--RIITVGEDCT--CRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             cccceeEEEEeccc--eeEEeccceE--EEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            89999999999998  9999999999  67777777777788888878899999999999999999999999999754

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.46  E-value=1.1e-10  Score=113.00  Aligned_cols=238  Identities=15%  Similarity=0.117  Sum_probs=145.0

Q ss_pred             cEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeE---EEEeCCC--eEEEEECCCCcEEEEeCCCCCceEEEEEeC
Q 042434          245 SAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKL---LTCGNAE--VLKLWDVETGICKHTFGDHGFIVSSCAWFP  319 (517)
Q Consensus       245 ~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l---~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~  319 (517)
                      .|.+.|.+.++.    ..+......+.+-+|+|||+.+   ++...+|  .|.+.++.+|+..... ...+.....+|+|
T Consensus       166 ~l~~~d~dG~~~----~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt-~~~g~~~~p~wSP  240 (428)
T PRK01029        166 ELWSVDYDGQNL----RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL-ALQGNQLMPTFSP  240 (428)
T ss_pred             eEEEEcCCCCCc----eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee-cCCCCccceEECC
Confidence            455666543322    2344455667788999999753   2333343  6888898887654333 3444556789999


Q ss_pred             CCCeEEEeeC-CCceeEEE--EeCCC---CeeEeeeCcCCCceEEEEEccCCCEEEEEe-CCCc--EEEEECCC--ce-E
Q 042434          320 DSKRLVCGSS-DTEKGIFM--CDCDG---NEIKAWRGTRIPKVLDLAVTPDGENLISVL-SDKD--IRILNLGT--YA-E  387 (517)
Q Consensus       320 ~~~~l~~~~~-d~~v~i~~--~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~--i~i~d~~~--~~-~  387 (517)
                      ||+.|+..+. +|...++.  |+..+   .....+.....+.....+|+|||+.|+..+ .+|.  |+++++..  .. .
T Consensus       241 DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~  320 (428)
T PRK01029        241 RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPR  320 (428)
T ss_pred             CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceE
Confidence            9998887653 34322444  55542   222333322222345689999999877665 4564  44445532  22 2


Q ss_pred             EeeccCCCeeEEEEcCCCCEEEEEeCC---CeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecC---CC
Q 042434          388 RVISEEHPITSLSVSVDCKNFIVNLNS---QEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSE---NS  461 (517)
Q Consensus       388 ~~~~~~~~i~~~~~s~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg  461 (517)
                      ........+....|+|||+.++..+.+   ..|.+||+.++..  ..+......   .....|+|||+.|+..+.   .+
T Consensus       321 ~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~--~~Lt~~~~~---~~~p~wSpDG~~L~f~~~~~g~~  395 (428)
T PRK01029        321 LLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD--YQLTTSPEN---KESPSWAIDSLHLVYSAGNSNES  395 (428)
T ss_pred             EeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe--EEccCCCCC---ccceEECCCCCEEEEEECCCCCc
Confidence            233344566789999999998877653   3699999977622  222222111   233456899998875433   35


Q ss_pred             cEEEEecCCCceeEEecCCCCCeeEEEecCCC
Q 042434          462 QIYIWNRRNSKPIEILSGHSMTVNCVSWNPKR  493 (517)
Q Consensus       462 ~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~  493 (517)
                      .|+++|+.+++...... ..+.+...+|+|-.
T Consensus       396 ~L~~vdl~~g~~~~Lt~-~~g~~~~p~Ws~~~  426 (428)
T PRK01029        396 ELYLISLITKKTRKIVI-GSGEKRFPSWGAFP  426 (428)
T ss_pred             eEEEEECCCCCEEEeec-CCCcccCceecCCC
Confidence            79999998776544443 45667788998854

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.43  E-value=2.1e-09  Score=98.93  Aligned_cols=260  Identities=11%  Similarity=0.032  Sum_probs=156.7

Q ss_pred             CcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeC----------CCeEEEEECCCCcEEEEeCCCC----
Q 042434          244 CSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGN----------AEVLKLWDVETGICKHTFGDHG----  309 (517)
Q Consensus       244 g~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~----  309 (517)
                      ++|.+.|..+.   +.+.++.....+- .+ ++||++.++++..          +..|.+||..+.+.+..+....    
T Consensus        27 ~~v~ViD~~~~---~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~  101 (352)
T TIGR02658        27 TQVYTIDGEAG---RVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRF  101 (352)
T ss_pred             ceEEEEECCCC---EEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchh
Confidence            88999998665   4444444333332 24 9999998887755          6799999999999998886322    


Q ss_pred             ---CceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeE-eeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCC-
Q 042434          310 ---FIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIK-AWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGT-  384 (517)
Q Consensus       310 ---~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-  384 (517)
                         .....++++|||+++++...+..-.+-++|.....+. ......  ...-...+++...  +-+.||......+.+ 
T Consensus       102 ~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~--~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~  177 (352)
T TIGR02658       102 LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD--CYHIFPTANDTFF--MHCRDGSLAKVGYGTK  177 (352)
T ss_pred             hccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC--CcEEEEecCCccE--EEeecCceEEEEecCC
Confidence               2334789999999999877553333888888865543 333222  1111112111111  112333333322211 


Q ss_pred             ce-----EEeecc-CCCe-eEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCccc----eEEeCc------ccCceEEEeec
Q 042434          385 YA-----ERVISE-EHPI-TSLSVSV-DCKNFIVNLNSQEIHMWDVAGKWEKP----FKYTGH------SQNKYVIRSCF  446 (517)
Q Consensus       385 ~~-----~~~~~~-~~~i-~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~----~~~~~~------~~~~~~i~~~~  446 (517)
                      ++     ...+.. ..++ ..-.+.+ +|+++.+... |.|.+.|+.+.....    ..+...      ....  +..+.
T Consensus       178 g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g--~q~ia  254 (352)
T TIGR02658       178 GNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGG--WQQVA  254 (352)
T ss_pred             CceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCc--ceeEE
Confidence            11     111111 0000 0013455 7888877777 999999975431111    111100      1111  12255


Q ss_pred             CCCCCcEEEEec----------CCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCC-cEEEEeeCCCcEEEeCCCCCC
Q 042434          447 GGLDGTFIASGS----------ENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRP-KMLASASDDHTIRIWGPCQSS  515 (517)
Q Consensus       447 ~s~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~l~s~~~dg~v~iw~~~~~~  515 (517)
                      ++++++.+++..          ..+.|.++|..+++.+..+.. ...+..++++||+. .++++...++.|.+.|..+++
T Consensus       255 ~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k  333 (352)
T TIGR02658       255 YHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGK  333 (352)
T ss_pred             EcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCe
Confidence            588988888743          224799999999999998874 45889999999995 444455578999999999886


Q ss_pred             C
Q 042434          516 E  516 (517)
Q Consensus       516 ~  516 (517)
                      .
T Consensus       334 ~  334 (352)
T TIGR02658       334 E  334 (352)
T ss_pred             E
Confidence            4

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.41  E-value=6.8e-10  Score=100.80  Aligned_cols=174  Identities=16%  Similarity=0.198  Sum_probs=140.2

Q ss_pred             ECC-CCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCC-eEEEEECCCCcEEEEeCC
Q 042434          230 FSN-NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAE-VLKLWDVETGICKHTFGD  307 (517)
Q Consensus       230 ~s~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~  307 (517)
                      |++ +|.+++..|. |...|.+...+-.     .--+|.+.|.-..+..+++-++.|..|| .+-|+|..+++.. .+..
T Consensus       327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~-----iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~  399 (668)
T COG4946         327 FAVVNGDYIALVSR-GKAFIMRPWDGYS-----IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEK  399 (668)
T ss_pred             hccCCCcEEEEEec-CcEEEECCCCCee-----EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeC
Confidence            455 7888888876 6777766543321     1235778899999999999999999999 9999999887654 4556


Q ss_pred             CCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCC----cEEEEECC
Q 042434          308 HGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDK----DIRILNLG  383 (517)
Q Consensus       308 ~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~i~d~~  383 (517)
                      .-+.|.++..+++|+.++++.....  +|++|.++...+.......+-|+.+.|+|++++++-+--+|    .|+++|+.
T Consensus       400 ~lg~I~av~vs~dGK~~vvaNdr~e--l~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~  477 (668)
T COG4946         400 DLGNIEAVKVSPDGKKVVVANDRFE--LWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMD  477 (668)
T ss_pred             CccceEEEEEcCCCcEEEEEcCceE--EEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecC
Confidence            6778999999999999999988887  99999999888888888888999999999999999887766    68999999


Q ss_pred             Cce-EEeeccCCCeeEEEEcCCCCEEEEEe
Q 042434          384 TYA-ERVISEEHPITSLSVSVDCKNFIVNL  412 (517)
Q Consensus       384 ~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~  412 (517)
                      +++ .........-.+-+|.|++++|..-+
T Consensus       478 ~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         478 GGKIYDVTTPTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             CCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence            987 44444555566788999999876544

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.41  E-value=1.5e-10  Score=105.94  Aligned_cols=274  Identities=15%  Similarity=0.210  Sum_probs=192.0

Q ss_pred             CCcccccCCCcccEEEeccccCc--EE-EEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCC
Q 042434          202 DHCCGRDQIPTETVQILTEHKNE--VW-FVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPD  278 (517)
Q Consensus       202 ~~~~~~~~~~~~~~~~l~~h~~~--v~-~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~  278 (517)
                      ++.+.|+...+..+..+.+-..+  .+ -+.|+.+.+|+|--. ...++|+++...-...+.+.+.  ...|....|+|.
T Consensus       108 n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~t~n~~~~p~~~lr--~~gi~dFsisP~  184 (561)
T COG5354         108 NNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEITDNIEEHPFKNLR--PVGILDFSISPE  184 (561)
T ss_pred             CceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEecCCccccCchhhcc--ccceeeEEecCC
Confidence            36677888888888888887777  77 788999988887653 3479999972211111222222  366888899996


Q ss_pred             C--CeEEE-----EeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeC---------CCceeEEEEeCCC
Q 042434          279 D--TKLLT-----CGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSS---------DTEKGIFMCDCDG  342 (517)
Q Consensus       279 ~--~~l~s-----~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~---------d~~v~i~~~~~~~  342 (517)
                      +  ..|+.     .+.++.+++|.+..+..+.+-.-....-..+.|.+.|+++++-..         =|.-.+++++..+
T Consensus       185 ~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e  264 (561)
T COG5354         185 GNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE  264 (561)
T ss_pred             CCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc
Confidence            4  33443     466789999999877776654444444467889999988765311         1112377777776


Q ss_pred             CeeEeeeCcCCCceEEEEEccCCCEEEEEe--CCCcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCC---CeE
Q 042434          343 NEIKAWRGTRIPKVLDLAVTPDGENLISVL--SDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNS---QEI  417 (517)
Q Consensus       343 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---~~i  417 (517)
                      ..+.... ...++|...+|.|.++.+++.+  .+..+.++|++.. .........-..+.|+|.++++++++-+   |.+
T Consensus       265 ~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni  342 (561)
T COG5354         265 RSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNI  342 (561)
T ss_pred             cccceec-cccccceeeeecccCCceeEEecccccceeecccccc-eEEecCCcccccccccCcccEEEEecCCccccce
Confidence            6665554 3346899999999998766554  6788999999887 5555666677888999999999987654   689


Q ss_pred             EEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEec------CCCcEEEEecCCCceeEEecCCCCCeeEEEecC
Q 042434          418 HMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGS------ENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNP  491 (517)
Q Consensus       418 ~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~  491 (517)
                      .+||..+.......+.+..     .+.|-|+||+.++.+..      .|..|.+||+.... +.       ..+.+.|.|
T Consensus       343 ~i~~~~~rf~~~~~~~~~n-----~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~-~f-------el~~~~W~p  409 (561)
T COG5354         343 EIFDPAGRFKVAGAFNGLN-----TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK-VF-------ELTNITWDP  409 (561)
T ss_pred             EEeccCCceEEEEEeecCC-----ceEeeccCCceEEEecCCCcccccCcceEEEEecCch-hh-------hhhhccccC
Confidence            9999988755555665544     44667799999998765      36789999986433 22       345566666


Q ss_pred             CC
Q 042434          492 KR  493 (517)
Q Consensus       492 ~~  493 (517)
                      .+
T Consensus       410 ~~  411 (561)
T COG5354         410 SG  411 (561)
T ss_pred             Cc
Confidence            66

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.40  E-value=2e-10  Score=107.22  Aligned_cols=190  Identities=19%  Similarity=0.257  Sum_probs=145.8

Q ss_pred             CCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEE------CC--------------CCCeEEEEeCCCe
Q 042434          231 SNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAW------SP--------------DDTKLLTCGNAEV  290 (517)
Q Consensus       231 s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~------s~--------------~~~~l~s~~~dg~  290 (517)
                      .|.+.|+|....||.+++|+...+...........-.+..++..|      +|              |...++-|...|.
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            356679999999999999999766432222211222344455555      22              3456778888999


Q ss_pred             EEEEECCCCcEEEEeC--CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEE
Q 042434          291 LKLWDVETGICKHTFG--DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENL  368 (517)
Q Consensus       291 i~iwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  368 (517)
                      |.+|++..|+....+.  .|.+.|.++.++.+-..|.+++.|+.  +..|+.....+..........+.+++++|||..+
T Consensus        82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~--v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l  159 (541)
T KOG4547|consen   82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLK--VVYILEKEKVIIRIWKEQKPLVSSLCISPDGKIL  159 (541)
T ss_pred             EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCcee--EEEEecccceeeeeeccCCCccceEEEcCCCCEE
Confidence            9999999999888775  78999999999999999999999998  8888888766655444444589999999999999


Q ss_pred             EEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCC-----CCEEEEEeC-CCeEEEEEcCC
Q 042434          369 ISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVD-----CKNFIVNLN-SQEIHMWDVAG  424 (517)
Q Consensus       369 ~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~-----~~~l~~~~~-d~~i~~~d~~~  424 (517)
                      ++++  +.|.+||+.+.+  ..+.+|..+|.+++|..+     |.+++++.. +..+.+|-+..
T Consensus       160 ~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  160 LTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             Eecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            8876  579999999998  677889999999999876     777776654 44567776644

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.37  E-value=4.1e-11  Score=118.70  Aligned_cols=273  Identities=14%  Similarity=0.198  Sum_probs=179.8

Q ss_pred             ccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEE---EEeccCC--CCEEEEEECCCCCeEEEEeCCCeEEEEE
Q 042434          221 HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLK---HTLRSHQ--NPVSFVAWSPDDTKLLTCGNAEVLKLWD  295 (517)
Q Consensus       221 h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~---~~~~~h~--~~v~~l~~s~~~~~l~s~~~dg~i~iwd  295 (517)
                      |-+++++..+-.  +||.+|+. -.|.+||+..+.-+...   ..+..|.  +.+.     -.+.+++++..-+.+..=+
T Consensus         6 ~~~~l~~~~~~~--~~llag~g-p~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~-----l~~~~~v~~~~~~~v~~~~   77 (967)
T KOG0974|consen    6 SLGPLNLPQLVS--DYLLAGSG-PEILVYDLSSGCLIRHLIQSKILEVHRGEGKVK-----LLSGKIVTCAKSDEVYVKE   77 (967)
T ss_pred             ccccccchhhcc--ceeeecCC-CceEEeeCCchhHhhhhhhhcccccccccccce-----eccceEEEEEeecceeecc
Confidence            344555555543  57777654 46999998755322111   1222330  0000     1234455555444333322


Q ss_pred             CCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEee-eCcCCC---ceEEEEEccCCCEEEEE
Q 042434          296 VETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAW-RGTRIP---KVLDLAVTPDGENLISV  371 (517)
Q Consensus       296 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~-~~~~~~---~i~~~~~~~~~~~l~~~  371 (517)
                      .... ..   ......|....+..+...++.++.++.  +++|+.....+..- ......   ...-+.++++.-++++|
T Consensus        78 ~~~~-~~---~~~s~wi~g~~l~~e~k~i~l~~~~ns--~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~g  151 (967)
T KOG0974|consen   78 ASNQ-II---ERFSDWIFGAKLFEENKKIALVTSRNS--LLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASG  151 (967)
T ss_pred             hhhh-hh---hhccccccccchhhhcceEEEEEcCce--EEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEec
Confidence            2111 11   122334444555556778888888888  78888765443322 222211   12223445666689999


Q ss_pred             eCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCC
Q 042434          372 LSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGL  449 (517)
Q Consensus       372 ~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~  449 (517)
                      +.-+.|.+|+.....  .....|.+.+.++.++.||+++++.+.|..+++|++.+.........+|....+.  ++ +.|
T Consensus       152 sv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~--~~-~~~  228 (967)
T KOG0974|consen  152 SVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWA--CC-FLP  228 (967)
T ss_pred             cccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEE--EE-ecc
Confidence            999999999987433  4578899999999999999999999999999999998875555456667665333  33 355


Q ss_pred             CCcEEEEecCCCcEEEEecCCCceeEEecCCC-CCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCC
Q 042434          450 DGTFIASGSENSQIYIWNRRNSKPIEILSGHS-MTVNCVSWNPKRPKMLASASDDHTIRIWGPCQS  514 (517)
Q Consensus       450 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~  514 (517)
                      +  .++++++|.+.++|+.. ++.+.++.+|. ..|..++..++. ...+|++.||.+++|+....
T Consensus       229 n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~-~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  229 N--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGV-IIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             c--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCc-eEEEeeccCcchhhhhhhcc
Confidence            5  99999999999999754 66666888885 578999999888 79999999999999998653

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.37  E-value=2.4e-09  Score=98.51  Aligned_cols=262  Identities=12%  Similarity=0.058  Sum_probs=159.8

Q ss_pred             CCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeC----------CCcEEEEEecCCCeeeEEEEeccC-----
Q 042434          202 DHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSS----------DCSAIIWKVLEDSKLTLKHTLRSH-----  266 (517)
Q Consensus       202 ~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~----------dg~i~iw~~~~~~~~~~~~~~~~h-----  266 (517)
                      +....++....+.+..+..-..+-- + +||||+.|+.+..          +..|.+||..+.+.   ...+...     
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~---~~~i~~p~~p~~  101 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP---IADIELPEGPRF  101 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE---EeEEccCCCchh
Confidence            3444556666677777764443333 4 9999998877655          78899999976643   3333321     


Q ss_pred             --CCCEEEEEECCCCCeEEEEe-C-CCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC
Q 042434          267 --QNPVSFVAWSPDDTKLLTCG-N-AEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG  342 (517)
Q Consensus       267 --~~~v~~l~~s~~~~~l~s~~-~-dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~  342 (517)
                        ......++++|||++|++.. . +..|.+.|+.+++.+..+.-.. ...-...+++...  +-+.||.......+..+
T Consensus       102 ~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g  178 (352)
T TIGR02658       102 LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDTFF--MHCRDGSLAKVGYGTKG  178 (352)
T ss_pred             hccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCccE--EEeecCceEEEEecCCC
Confidence              22334789999999998765 3 6899999999999998875422 2222222222222  22345543333333333


Q ss_pred             CeeEee-eC--cCCCce-EEEEEcc-CCCEEEEEeCCCcEEEEECCCce-----E-Eeec--------cCCCeeEEEEcC
Q 042434          343 NEIKAW-RG--TRIPKV-LDLAVTP-DGENLISVLSDKDIRILNLGTYA-----E-RVIS--------EEHPITSLSVSV  403 (517)
Q Consensus       343 ~~~~~~-~~--~~~~~i-~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~-----~-~~~~--------~~~~i~~~~~s~  403 (517)
                      +..... ..  .....+ ..-.+.+ +|+++++... |.|.+.|+....     . ....        .......+++++
T Consensus       179 ~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~  257 (352)
T TIGR02658       179 NPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR  257 (352)
T ss_pred             ceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC
Confidence            322111 00  000000 0003455 7877777666 999999965432     1 1111        122344599999


Q ss_pred             CCCEEEEEe----------CCCeEEEEEcCCCCccceEEe-CcccCceEEEeecCCCCCc-EEEEec-CCCcEEEEecCC
Q 042434          404 DCKNFIVNL----------NSQEIHMWDVAGKWEKPFKYT-GHSQNKYVIRSCFGGLDGT-FIASGS-ENSQIYIWNRRN  470 (517)
Q Consensus       404 ~~~~l~~~~----------~d~~i~~~d~~~~~~~~~~~~-~~~~~~~~i~~~~~s~~~~-~l~~~~-~dg~i~iwd~~~  470 (517)
                      +++.+++..          ..+.|.++|..+. +....+. ++.     ...+.++||++ +|++.+ .++.|.++|..+
T Consensus       258 dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~-kvi~~i~vG~~-----~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t  331 (352)
T TIGR02658       258 ARDRIYLLADQRAKWTHKTASRFLFVVDAKTG-KRLRKIELGHE-----IDSINVSQDAKPLLYALSTGDKTLYIFDAET  331 (352)
T ss_pred             CCCEEEEEecCCccccccCCCCEEEEEECCCC-eEEEEEeCCCc-----eeeEEECCCCCeEEEEeCCCCCcEEEEECcC
Confidence            999988853          2257999999887 4444433 332     33445599999 877666 578899999999


Q ss_pred             CceeEEec
Q 042434          471 SKPIEILS  478 (517)
Q Consensus       471 ~~~~~~~~  478 (517)
                      ++.+.++.
T Consensus       332 ~k~i~~i~  339 (352)
T TIGR02658       332 GKELSSVN  339 (352)
T ss_pred             CeEEeeec
Confidence            99998883

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.36  E-value=4.2e-11  Score=111.66  Aligned_cols=207  Identities=13%  Similarity=0.113  Sum_probs=150.2

Q ss_pred             CCCCeEEEEeCCCeEEEEECCCCcEEEEeCCC---CCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCC
Q 042434          277 PDDTKLLTCGNAEVLKLWDVETGICKHTFGDH---GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRI  353 (517)
Q Consensus       277 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~  353 (517)
                      |...++|....||.+++|+..+++....|.+.   .+..++..|.     |....              .+.+.....  
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~-----L~~~~--------------s~~k~~~~~--   61 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWG-----LSADY--------------SPMKWLSLE--   61 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEE-----EEecc--------------chHHHHhHH--
Confidence            45678999999999999999999887777432   3344444443     11111              111000000  


Q ss_pred             CceEEEEEccCCCEEEEEeCCCcEEEEECCCceEE----eeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccc
Q 042434          354 PKVLDLAVTPDGENLISVLSDKDIRILNLGTYAER----VISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKP  429 (517)
Q Consensus       354 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~  429 (517)
                       ..  -..+.+...++-|...|.|.+|+...++..    .-.|.+.+.++.++.+-..+.+++.|..+..|+.... ...
T Consensus        62 -~~--~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~-~~~  137 (541)
T KOG4547|consen   62 -KA--KKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK-VII  137 (541)
T ss_pred             -HH--hhccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc-eee
Confidence             00  011234457888899999999999888722    2356778999999999999999999999999999776 555


Q ss_pred             eEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCC-----CCcEEEEeeCCC
Q 042434          430 FKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPK-----RPKMLASASDDH  504 (517)
Q Consensus       430 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~-----~~~~l~s~~~dg  504 (517)
                      ..+......   +...+.+|||..+++++  +.|++||+++++.+.+|.||.++|+++.|..+     |..+|.+...+.
T Consensus       138 ~~~~~~~~~---~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r  212 (541)
T KOG4547|consen  138 RIWKEQKPL---VSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAER  212 (541)
T ss_pred             eeeccCCCc---cceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeecccccc
Confidence            555554444   44455589999999886  57999999999999999999999999999877     546777777778


Q ss_pred             cEEEeCCCC
Q 042434          505 TIRIWGPCQ  513 (517)
Q Consensus       505 ~v~iw~~~~  513 (517)
                      .+.+|-+..
T Consensus       213 ~i~~w~v~~  221 (541)
T KOG4547|consen  213 GITVWVVEK  221 (541)
T ss_pred             ceeEEEEEc
Confidence            888897765

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.36  E-value=1.5e-11  Score=127.71  Aligned_cols=221  Identities=12%  Similarity=0.154  Sum_probs=166.8

Q ss_pred             ccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeC-CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC
Q 042434          264 RSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFG-DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG  342 (517)
Q Consensus       264 ~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~  342 (517)
                      ..+-..|.++.-+|...+.++|+.||.+++|....++.+..+. .....|+.+.|+.+|+.+..+..||.  +-.|....
T Consensus      2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~--l~l~q~~p 2282 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGD--LSLWQASP 2282 (2439)
T ss_pred             ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCc--eeecccCC
Confidence            3456778999999999999999999999999999888877765 23488999999999999999999999  77777776


Q ss_pred             CeeEeeeCcCCCceEEEEEccCCCEEEEEe---CCCcEEEEECCCce---EEeeccCCCeeEEEEcCCCCEEEEEeCCCe
Q 042434          343 NEIKAWRGTRIPKVLDLAVTPDGENLISVL---SDKDIRILNLGTYA---ERVISEEHPITSLSVSVDCKNFIVNLNSQE  416 (517)
Q Consensus       343 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~  416 (517)
                      +....++.+.. ...++.|-.  ..+++++   .++.+.+||..-..   .....|.+.++++++.|....+++|+.+|.
T Consensus      2283 k~~~s~qchnk-~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~ 2359 (2439)
T KOG1064|consen 2283 KPYTSWQCHNK-ALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGE 2359 (2439)
T ss_pred             cceeccccCCc-cccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCc
Confidence            66666666553 455666654  4455543   46789999975433   444778899999999999999999999999


Q ss_pred             EEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecC-C--CCC--e--eEEEe
Q 042434          417 IHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSG-H--SMT--V--NCVSW  489 (517)
Q Consensus       417 i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-h--~~~--v--~~v~~  489 (517)
                      |++||++.. +....+..            +. ...++++|+..|.|+||++....++++++. |  .+-  .  ..+-.
T Consensus      2360 v~l~D~rqr-ql~h~~~~------------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v 2425 (2439)
T KOG1064|consen 2360 VCLFDIRQR-QLRHTFQA------------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQINV 2425 (2439)
T ss_pred             EEEeehHHH-HHHHHhhh------------hh-hhheeeccCcccceEEEEccccchhhcCchhhcccchhhhcCceeee
Confidence            999999765 33333332            12 456899999999999999998888877763 1  111  1  22333


Q ss_pred             cCCCCcEEEEeeCCCc
Q 042434          490 NPKRPKMLASASDDHT  505 (517)
Q Consensus       490 ~~~~~~~l~s~~~dg~  505 (517)
                      .+.  +.|.+|+.||+
T Consensus      2426 ~~~--nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2426 GQC--NRIFSCGADGT 2439 (2439)
T ss_pred             ccC--ceEEEecCCCC
Confidence            333  36788888874

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.34  E-value=3.5e-09  Score=110.85  Aligned_cols=285  Identities=16%  Similarity=0.190  Sum_probs=183.9

Q ss_pred             cccCcEEEEEECCCCCEEEEeeCCCcEEEE----EecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEE
Q 042434          220 EHKNEVWFVQFSNNGEYLASSSSDCSAIIW----KVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWD  295 (517)
Q Consensus       220 ~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw----~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd  295 (517)
                      ...+.|.++.|-++...++.+..+|.|.+.    +... ...+.+.   .-...|.+++||||+..|+..+.++++.+-+
T Consensus        73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~-~~~E~VG---~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt  148 (928)
T PF04762_consen   73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDE-DEIEIVG---SVDSGILAASWSPDEELLALVTGEGNLLLMT  148 (928)
T ss_pred             CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCC-ceeEEEE---EEcCcEEEEEECCCcCEEEEEeCCCEEEEEe
Confidence            345789999999999999999999999999    4322 2233333   3478899999999999999999999887763


Q ss_pred             CC---------------C--------CcEEEEeCC------------------------CCCceEEEEEeCCCCeEEEee
Q 042434          296 VE---------------T--------GICKHTFGD------------------------HGFIVSSCAWFPDSKRLVCGS  328 (517)
Q Consensus       296 ~~---------------~--------~~~~~~~~~------------------------~~~~v~~i~~~~~~~~l~~~~  328 (517)
                      -.               .        |+.-..|++                        ....-..++|-.||.+||+.+
T Consensus       149 ~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss  228 (928)
T PF04762_consen  149 RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSS  228 (928)
T ss_pred             ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEE
Confidence            21               0        111111110                        222446789999999999987


Q ss_pred             C---CC-ceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeC---CCcEEEEECCCceE---Ee--eccCCCe
Q 042434          329 S---DT-EKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLS---DKDIRILNLGTYAE---RV--ISEEHPI  396 (517)
Q Consensus       329 ~---d~-~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~---~~--~~~~~~i  396 (517)
                      .   .| .-.+.+|+-+|. +........+--.+++|.|.|+++++...   ...|.+|.-+..+.   ..  ......+
T Consensus       229 ~~~~~~~~R~iRVy~ReG~-L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v  307 (928)
T PF04762_consen  229 VEPETGSRRVIRVYSREGE-LQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKV  307 (928)
T ss_pred             EEcCCCceeEEEEECCCce-EEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCcee
Confidence            6   44 455888887754 33322233334557899999999998765   34677777555441   11  1345679


Q ss_pred             eEEEEcCCCCEEEEEeCCCeEEEEEcCCC-CccceEEeCcccCceEEEeecCCCC-CcEEEEecCCCcEEEEecC----C
Q 042434          397 TSLSVSVDCKNFIVNLNSQEIHMWDVAGK-WEKPFKYTGHSQNKYVIRSCFGGLD-GTFIASGSENSQIYIWNRR----N  470 (517)
Q Consensus       397 ~~~~~s~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~iwd~~----~  470 (517)
                      ..+.|++++..|++...|. |.+|-..+- |-..+.+.......  +..+.|+|. ...|...+.+|.+..++..    .
T Consensus       308 ~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~--~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~  384 (928)
T PF04762_consen  308 IELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSES--VNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSR  384 (928)
T ss_pred             eEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCC--CCceEECCCCCCEEEEEecCCcEEEEEEEEEEEe
Confidence            9999999999999987655 999988553 22222222211111  122444553 3445556655655544321    1


Q ss_pred             Cc--------eeEEec-----------------------CCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434          471 SK--------PIEILS-----------------------GHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ  513 (517)
Q Consensus       471 ~~--------~~~~~~-----------------------~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~  513 (517)
                      +.        .+..+.                       .-..+|.+++|++++ ..+++-..||.|.+|....
T Consensus       385 s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~-~~~avl~~d~~l~~~~~~~  457 (928)
T PF04762_consen  385 SPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSN-SRFAVLTSDGSLSIYEWDL  457 (928)
T ss_pred             cCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCC-CeEEEEECCCCEEEEEecC
Confidence            10        111111                       134689999999998 5699999999999988543

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.34  E-value=2.1e-09  Score=103.40  Aligned_cols=204  Identities=13%  Similarity=0.080  Sum_probs=133.9

Q ss_pred             cccEEEeccccCcEEEEEECCCCCE-EEEeeCC---CcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEE-e
Q 042434          212 TETVQILTEHKNEVWFVQFSNNGEY-LASSSSD---CSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTC-G  286 (517)
Q Consensus       212 ~~~~~~l~~h~~~v~~~~~s~~~~~-l~t~~~d---g~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~  286 (517)
                      +...+.+.... .+....|||||+. ++..+.+   ..|.++|+.++... .   +....+......|+|||+.++.. +
T Consensus       178 g~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~-~---lt~~~g~~~~~~~SPDG~~la~~~~  252 (419)
T PRK04043        178 LTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE-K---IASSQGMLVVSDVSKDGSKLLLTMA  252 (419)
T ss_pred             CCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE-E---EecCCCcEEeeEECCCCCEEEEEEc
Confidence            33344344333 7889999999985 6654443   45888888665432 2   22345566778899999877654 3


Q ss_pred             CC--CeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeC-CCceeEEEEeCCCCeeEeeeCcCCCceEEEEEcc
Q 042434          287 NA--EVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSS-DTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTP  363 (517)
Q Consensus       287 ~d--g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~  363 (517)
                      .+  ..|.++|+.+++.. .+..+........|+|||+.|+..+. .+.-.|+..+..+........... .  ...|+|
T Consensus       253 ~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~-~--~~~~SP  328 (419)
T PRK04043        253 PKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK-N--NSSVST  328 (419)
T ss_pred             cCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC-c--CceECC
Confidence            33  47888898887644 34344333445689999998777664 455579999998766644433221 1  248999


Q ss_pred             CCCEEEEEeCC---------CcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCC---eEEEEEcCC
Q 042434          364 DGENLISVLSD---------KDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQ---EIHMWDVAG  424 (517)
Q Consensus       364 ~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~---~i~~~d~~~  424 (517)
                      +|+.++.....         ..|.+.|+.++...............|+|||+.++..+..+   .+.++++.+
T Consensus       329 DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g  401 (419)
T PRK04043        329 YKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY  401 (419)
T ss_pred             CCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCCCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence            99988876654         36888898887744443334445689999999887776533   355666654

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.34  E-value=5.7e-10  Score=107.20  Aligned_cols=215  Identities=17%  Similarity=0.194  Sum_probs=144.7

Q ss_pred             CcccccCCCcccEEEeccccCcEEEEEECCCC------------CEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCE
Q 042434          203 HCCGRDQIPTETVQILTEHKNEVWFVQFSNNG------------EYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPV  270 (517)
Q Consensus       203 ~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~------------~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v  270 (517)
                      .....|....+.++.+..|...|+.+.|.|-.            -.||++...|.|.+||....   ..+..+..|..++
T Consensus        36 lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~---s~~~~l~~~~~~~  112 (1062)
T KOG1912|consen   36 LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLA---SVINWLSHSNDSV  112 (1062)
T ss_pred             eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhh---hhhhhhcCCCcch
Confidence            34556778889999999999999999998731            25778888999999999765   3345677789999


Q ss_pred             EEEEECC---CC-CeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeC-CCCeEEEeeCCCceeEEEEeCC----
Q 042434          271 SFVAWSP---DD-TKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFP-DSKRLVCGSSDTEKGIFMCDCD----  341 (517)
Q Consensus       271 ~~l~~s~---~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~d~~v~i~~~~~~----  341 (517)
                      ..++|-+   +. ..|++-....++.+|+..+|+.............|+.+.| |.+.+..-+..|.  +...+.-    
T Consensus       113 qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~--vl~~~~l~~se  190 (1062)
T KOG1912|consen  113 QDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGF--VLSCKDLGLSE  190 (1062)
T ss_pred             hheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCce--EEEEeccCCCC
Confidence            9999976   33 4666667788999999999999988877777888899988 6667777777776  4443322    


Q ss_pred             ----CCeeEeeeCcCC-----------C-------------ceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeec
Q 042434          342 ----GNEIKAWRGTRI-----------P-------------KVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVIS  391 (517)
Q Consensus       342 ----~~~~~~~~~~~~-----------~-------------~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~  391 (517)
                          ++.......+..           .             ....++|+|.-+.++.......+.++|++-..  .....
T Consensus       191 p~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpi  270 (1062)
T KOG1912|consen  191 PDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPI  270 (1062)
T ss_pred             CCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEe
Confidence                122221111100           0             01125667776666666677778888876544  22233


Q ss_pred             cCCCeeEEEEcCCC--CEEEEEeCCCeEEEEEc
Q 042434          392 EEHPITSLSVSVDC--KNFIVNLNSQEIHMWDV  422 (517)
Q Consensus       392 ~~~~i~~~~~s~~~--~~l~~~~~d~~i~~~d~  422 (517)
                      ..+.+.-+.+-|++  ..+++...||.+.+|--
T Consensus       271 er~~akfv~vlP~~~rd~LfclH~nG~ltirvr  303 (1062)
T KOG1912|consen  271 ERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVR  303 (1062)
T ss_pred             ccCCcceeEeccCCCcceEEEEecCCeEEEEEe
Confidence            33444445555543  34666666776666643

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.33  E-value=1.6e-10  Score=100.54  Aligned_cols=201  Identities=15%  Similarity=0.175  Sum_probs=151.7

Q ss_pred             ccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCC-CeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCC
Q 042434          221 HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLED-SKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETG  299 (517)
Q Consensus       221 h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~-~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~  299 (517)
                      -..+++++.++++...|+.|-..|++.-+.+... ++....+....|...|..+-|+-...++++++.|..+.---.+.+
T Consensus        67 mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~  146 (404)
T KOG1409|consen   67 MPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESG  146 (404)
T ss_pred             CCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccC
Confidence            3567889999999999999999999998876432 233455667789999999999999999999999977654444555


Q ss_pred             cEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEE
Q 042434          300 ICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRI  379 (517)
Q Consensus       300 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  379 (517)
                      ..+..+. .....+++.+.-.  +.+.|...|.+.+......+-.+......+.+.+.+++|.+....+.+|..|..+.+
T Consensus       147 ~~lg~Y~-~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~  223 (404)
T KOG1409|consen  147 NRLGGYN-FETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIM  223 (404)
T ss_pred             CcccceE-eeccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEE
Confidence            4433221 0111112222111  566677778776777776666665556666679999999999999999999999999


Q ss_pred             EECCCce---EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 042434          380 LNLGTYA---ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAG  424 (517)
Q Consensus       380 ~d~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~  424 (517)
                      ||+...+   .....+.+.+..+...+--+.+.+++.||.|.+|+++.
T Consensus       224 wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  224 WDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             EeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence            9997766   55667888888888888888999999999999999854

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.32  E-value=1.2e-09  Score=93.38  Aligned_cols=267  Identities=11%  Similarity=0.090  Sum_probs=168.1

Q ss_pred             CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECC---CCC-eEEEEeCCCeEEEEECCCCcEEEEeCCC---C---Cce
Q 042434          243 DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP---DDT-KLLTCGNAEVLKLWDVETGICKHTFGDH---G---FIV  312 (517)
Q Consensus       243 dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~---~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~---~~v  312 (517)
                      .|.+.+|++...+...........+..+..+.|..   +|. .++-+..+|.|.++..........+.+-   .   ...
T Consensus        45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~  124 (339)
T KOG0280|consen   45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA  124 (339)
T ss_pred             ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence            46788898865433221111122345677788863   455 5566777899999987654444444322   1   124


Q ss_pred             EEEEEeCCCCeEEEeeCCCceeEEEEeCCC---CeeEeeeCcCCCceEEEEEccC-CCEEEEEeCCCcEEEEECCCce--
Q 042434          313 SSCAWFPDSKRLVCGSSDTEKGIFMCDCDG---NEIKAWRGTRIPKVLDLAVTPD-GENLISVLSDKDIRILNLGTYA--  386 (517)
Q Consensus       313 ~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~--  386 (517)
                      .++.|++.+..++++..+|.+.  ..+...   .....++.+.. ......|+.. .+.+.+|+.|+.+..||++...  
T Consensus       125 lslD~~~~~~~i~vs~s~G~~~--~v~~t~~~le~vq~wk~He~-E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~  201 (339)
T KOG0280|consen  125 LSLDISTSGTKIFVSDSRGSIS--GVYETEMVLEKVQTWKVHEF-EAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTF  201 (339)
T ss_pred             eEEEeeccCceEEEEcCCCcEE--EEecceeeeeecccccccce-eeeeeecccCCCceEEecCCCceEEEEEecCCcce
Confidence            5788999999999999999854  333222   22334555543 5555666653 4588999999999999999444  


Q ss_pred             --EEeeccCCCeeEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcE
Q 042434          387 --ERVISEEHPITSLSVSV-DCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQI  463 (517)
Q Consensus       387 --~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i  463 (517)
                        .....|...|.++.-+| .+.++++|+.|..|++||.++-.+++..-. ..++++.+...... .+..++++-.+| .
T Consensus       202 i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~-~~~lL~~CMh~G-~  278 (339)
T KOG0280|consen  202 IWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEI-FHRLLAACMHNG-A  278 (339)
T ss_pred             eeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchh-hhHHHHHHHhcC-c
Confidence              22445677788888776 578899999999999999986544443322 22444444432211 133344443333 5


Q ss_pred             EEEecCCCc-----eeEEecCCCCCeeEEEecCCCCcEEEEee-CCCcEE-EeCCCCCCC
Q 042434          464 YIWNRRNSK-----PIEILSGHSMTVNCVSWNPKRPKMLASAS-DDHTIR-IWGPCQSSE  516 (517)
Q Consensus       464 ~iwd~~~~~-----~~~~~~~h~~~v~~v~~~~~~~~~l~s~~-~dg~v~-iw~~~~~~~  516 (517)
                      +|-+...+.     .....+.|.+-+..-.|.... .+++||+ .|+.++ +|-.-++.+
T Consensus       279 ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~-~~lATCsFYDk~~~~~Wl~~t~~~  337 (339)
T KOG0280|consen  279 KILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKD-SFLATCSFYDKKIRQLWLHITGEP  337 (339)
T ss_pred             eEEEecccccchheeeeccccccceeecccccccc-ceeeeeeccccceeeeeeeccCCc
Confidence            666655432     334456788888888886554 5789877 577766 897776653

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.32  E-value=4.2e-11  Score=113.72  Aligned_cols=235  Identities=16%  Similarity=0.205  Sum_probs=165.2

Q ss_pred             CCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc---------------EEEEeCCCCCceEEEEEeCCCCeEEEeeCCC
Q 042434          267 QNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI---------------CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDT  331 (517)
Q Consensus       267 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~---------------~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~  331 (517)
                      .....|++|+....++++||.||.++|..+.+..               .-+++.+|...|.-+.|+.+.+.+-++..+|
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G   93 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG   93 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence            4567899999999999999999999999876531               1245678999999999999999999999999


Q ss_pred             ceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceEEeec-cCCCeeEEEEcCCCCEEEE
Q 042434          332 EKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVIS-EEHPITSLSVSVDCKNFIV  410 (517)
Q Consensus       332 ~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~  410 (517)
                      -|.||..-...-..........+.|.+++|+.||..+.....||.|.+=.+......-.. .......+.|++|.+.++.
T Consensus        94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf  173 (1189)
T KOG2041|consen   94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALF  173 (1189)
T ss_pred             eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHh
Confidence            944443322222222233344457999999999999999999999998888776532222 2223557899999999999


Q ss_pred             EeCCCeEEEEEcCCCCccceEE------eC-cc---cCceEEE-----eecCCCCCcEEEEecCCCcEEEEecCCCceeE
Q 042434          411 NLNSQEIHMWDVAGKWEKPFKY------TG-HS---QNKYVIR-----SCFGGLDGTFIASGSENSQIYIWNRRNSKPIE  475 (517)
Q Consensus       411 ~~~d~~i~~~d~~~~~~~~~~~------~~-~~---~~~~~i~-----~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  475 (517)
                      +-.+|.+.+||..+........      .+ ..   .....+.     .....||...++++-.+|.+.+..-.+.....
T Consensus       174 ~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pv  253 (1189)
T KOG2041|consen  174 KKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPV  253 (1189)
T ss_pred             hhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCe
Confidence            9999999999986642211111      00 00   0000111     11225688899999999999887654433222


Q ss_pred             EecCCCCCeeEEEecCCCCcEEEEeeCC
Q 042434          476 ILSGHSMTVNCVSWNPKRPKMLASASDD  503 (517)
Q Consensus       476 ~~~~h~~~v~~v~~~~~~~~~l~s~~~d  503 (517)
                      .+. ..-.+.+..|+++| .+|+.+|.|
T Consensus       254 v~d-tgm~~vgakWnh~G-~vLAvcG~~  279 (1189)
T KOG2041|consen  254 VVD-TGMKIVGAKWNHNG-AVLAVCGND  279 (1189)
T ss_pred             EEe-cccEeecceecCCC-cEEEEccCc
Confidence            232 23678899999999 789988865

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.30  E-value=4.1e-09  Score=112.48  Aligned_cols=242  Identities=13%  Similarity=0.150  Sum_probs=158.8

Q ss_pred             EEEEECCC-CCeEEEEeCCCeEEEEECCCCcEEEEeCC-C-------------CCceEEEEEeCCCCeEEEeeCCCceeE
Q 042434          271 SFVAWSPD-DTKLLTCGNAEVLKLWDVETGICKHTFGD-H-------------GFIVSSCAWFPDSKRLVCGSSDTEKGI  335 (517)
Q Consensus       271 ~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~-------------~~~v~~i~~~~~~~~l~~~~~d~~v~i  335 (517)
                      ..++++++ +..+++-+.++.|.+||.. +..+..+.. .             -.....+++.++++.|+++...+. +|
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~-~I  648 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENH-AL  648 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCc-eE
Confidence            45788775 5566676778899999975 554444432 1             123578999998887777655432 27


Q ss_pred             EEEeCCCCeeEeeeCcC----------------CCceEEEEEcc-CCCEEEEEeCCCcEEEEECCCceEEeec-------
Q 042434          336 FMCDCDGNEIKAWRGTR----------------IPKVLDLAVTP-DGENLISVLSDKDIRILNLGTYAERVIS-------  391 (517)
Q Consensus       336 ~~~~~~~~~~~~~~~~~----------------~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------  391 (517)
                      ..+|..+..+..+.+..                ......++++| ++..+++.+.++.|++||..++......       
T Consensus       649 r~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~  728 (1057)
T PLN02919        649 REIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERN  728 (1057)
T ss_pred             EEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcccc
Confidence            77887766665543210                11346789999 5556677778889999998776532211       


Q ss_pred             ---------cCCCeeEEEEcCCCCEEE-EEeCCCeEEEEEcCCCCccceE------------EeCccc-----CceEEEe
Q 042434          392 ---------EEHPITSLSVSVDCKNFI-VNLNSQEIHMWDVAGKWEKPFK------------YTGHSQ-----NKYVIRS  444 (517)
Q Consensus       392 ---------~~~~i~~~~~s~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~------------~~~~~~-----~~~~i~~  444 (517)
                               .......++++|+++.++ +.+.++.|++||+.++......            +.....     .......
T Consensus       729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G  808 (1057)
T PLN02919        729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG  808 (1057)
T ss_pred             CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence                     112356799999998555 5556789999998764221110            000000     0001123


Q ss_pred             ecCCCCCcEEEEecCCCcEEEEecCCCceeEEec-------------CCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCC
Q 042434          445 CFGGLDGTFIASGSENSQIYIWNRRNSKPIEILS-------------GHSMTVNCVSWNPKRPKMLASASDDHTIRIWGP  511 (517)
Q Consensus       445 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------------~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~  511 (517)
                      ++++++|.++++-+.++.|++||..++.......             ++-....+++++++| +++++-+.++.|++||+
T Consensus       809 vavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG-~lyVaDt~Nn~Irvid~  887 (1057)
T PLN02919        809 VLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENG-RLFVADTNNSLIRYLDL  887 (1057)
T ss_pred             eeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCC-CEEEEECCCCEEEEEEC
Confidence            4457889988888999999999998776543221             112357889999999 78999999999999999


Q ss_pred             CCCC
Q 042434          512 CQSS  515 (517)
Q Consensus       512 ~~~~  515 (517)
                      .+++
T Consensus       888 ~~~~  891 (1057)
T PLN02919        888 NKGE  891 (1057)
T ss_pred             CCCc
Confidence            8865

>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]

Probab=99.28  E-value=3.4e-11  Score=100.35  Aligned_cols=165  Identities=16%  Similarity=0.254  Sum_probs=117.5

Q ss_pred             CCchHHHHHHHHHHHhhcChHHHHHHHhhhcCeeec--C----hhHHHHHHHHHcCChHHHHHHhhcccCCChhhhcccc
Q 042434           13 LIKKYEFVRVVVQCLYSLGYQKSASCLESESGVSYK--S----KGFERLEVQILNGDWDGCIDTLIAITDLNDERRASVL   86 (517)
Q Consensus        13 ~~~~~~~~~li~q~L~~~g~~~s~~~l~~Esg~~~~--~----~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~   86 (517)
                      .+..+|+.+||+.||-..||.++|..+.+|+|+..+  +    ..-.+++.+|..|+-++|++.+.++.+-.-...+.+.
T Consensus        23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~  102 (228)
T KOG2659|consen   23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRELF  102 (228)
T ss_pred             CcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhHH
Confidence            578999999999999999999999999999999762  2    3455789999999999999999998543222334578


Q ss_pred             hhhhhhhhhHhhhcCChhHHHHHHHhhcccCCCC-hhHHhhhhhccccc--cccccccCCcchhhhHHHHHHHHHHHhCC
Q 042434           87 FPVFKQCFLEYLNRGDDSLALNVLRKRVSSLQMS-KDTIHNLASSMLCL--EGMNLGKIDEGVVLELRKRLLVELERLLP  163 (517)
Q Consensus        87 ~~~~~~~~~el~~~~~~~~a~~~lr~~~~~~~~~-~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~r~~l~~~~~~~~~  163 (517)
                      |.+++|+++|+++.+...+|+.++|.++.|.... +..++.+...+..-  +.+.......-.....|.++...+...+-
T Consensus       103 F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp~~~l~~~s~R~kvA~~vN~aiL  182 (228)
T KOG2659|consen  103 FHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESPSAELLSQSLRQKVASEVNSAIL  182 (228)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998874 45555555443321  11111111111123457777766665543


Q ss_pred             CCCCC-CcchHHHHH
Q 042434          164 PPEVV-PERRLEHLV  177 (517)
Q Consensus       164 ~~~~~-~~~rl~~l~  177 (517)
                      ..... ...+|..++
T Consensus       183 ~~~~~~~~~~l~~ll  197 (228)
T KOG2659|consen  183 ASQEHESEPKLPFLL  197 (228)
T ss_pred             HHhcccccchHHHHH
Confidence            22222 244566665

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.27  E-value=1.2e-08  Score=98.15  Aligned_cols=211  Identities=10%  Similarity=0.059  Sum_probs=135.2

Q ss_pred             CEEEEEECCCCCe-EEEEeCC---CeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEE-eeCCCceeEEEEeCCCC
Q 042434          269 PVSFVAWSPDDTK-LLTCGNA---EVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVC-GSSDTEKGIFMCDCDGN  343 (517)
Q Consensus       269 ~v~~l~~s~~~~~-l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~~~d~~v~i~~~~~~~~  343 (517)
                      ......|+|||+. ++..+.+   ..|.++|+.+++..... ...+......|+|||+.++. .+.++.-.+|.++..+.
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g  267 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK  267 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            7788999999985 6644443   47999999888765544 34555667889999987664 44466666999998877


Q ss_pred             eeEeeeCcCCCceEEEEEccCCCEEEEEeCC-C--cEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCC------
Q 042434          344 EIKAWRGTRIPKVLDLAVTPDGENLISVLSD-K--DIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNS------  414 (517)
Q Consensus       344 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------  414 (517)
                      ....+..... ......|+|||+.++..+.. +  .|+++|+.++........... ...|+|+|+.++.....      
T Consensus       268 ~~~~LT~~~~-~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~-~~~~SPDG~~Ia~~~~~~~~~~~  345 (419)
T PRK04043        268 TLTQITNYPG-IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN-NSSVSTYKNYIVYSSRETNNEFG  345 (419)
T ss_pred             cEEEcccCCC-ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc-CceECCCCCEEEEEEcCCCcccC
Confidence            6666544332 23456899999987776643 3  688888887764222222212 35899999998877653      


Q ss_pred             ---CeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCC---cEEEEecCCCceeEEecCCCCCeeEEE
Q 042434          415 ---QEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENS---QIYIWNRRNSKPIEILSGHSMTVNCVS  488 (517)
Q Consensus       415 ---~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~v~  488 (517)
                         ..|.+.|+.++..  ..+.....    .....|+|||+.|+..+.++   .+.+.++. |.....+....+.+...+
T Consensus       346 ~~~~~I~v~d~~~g~~--~~LT~~~~----~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~-g~~~~~l~~~~g~~~~p~  418 (419)
T PRK04043        346 KNTFNLYLISTNSDYI--RRLTANGV----NQFPRFSSDGGSIMFIKYLGNQSALGIIRLN-YNKSFLFPLKVGKIQSID  418 (419)
T ss_pred             CCCcEEEEEECCCCCe--EECCCCCC----cCCeEECCCCCEEEEEEccCCcEEEEEEecC-CCeeEEeecCCCccCCCC
Confidence               3688888876522  22322211    11244599999887665432   46677775 443444444444454443


Q ss_pred             e
Q 042434          489 W  489 (517)
Q Consensus       489 ~  489 (517)
                      |
T Consensus       419 W  419 (419)
T PRK04043        419 W  419 (419)
T ss_pred             C
Confidence            3

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.26  E-value=3.7e-08  Score=88.67  Aligned_cols=222  Identities=15%  Similarity=0.144  Sum_probs=146.4

Q ss_pred             EEEECC-CCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEe-CCCCeEEEeeCCCceeEEEEeCCCCeeEeee
Q 042434          272 FVAWSP-DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWF-PDSKRLVCGSSDTEKGIFMCDCDGNEIKAWR  349 (517)
Q Consensus       272 ~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~-~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~  349 (517)
                      ++.|.+ ++.++++-...+.|..|+..++.... +....  ...+++. ++ ..++.+...+   +..+|..+..+..+.
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~-g~l~v~~~~~---~~~~d~~~g~~~~~~   76 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPD-GRLYVADSGG---IAVVDPDTGKVTVLA   76 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTT-SEEEEEETTC---EEEEETTTTEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccC-CEEEEEEcCc---eEEEecCCCcEEEEe
Confidence            567887 66777776678999999998876543 22222  6677777 56 4555555555   455587766554433


Q ss_pred             Cc-----CCCceEEEEEccCCCEEEEEeCC--------CcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEE-EEeCCC
Q 042434          350 GT-----RIPKVLDLAVTPDGENLISVLSD--------KDIRILNLGTYAERVISEEHPITSLSVSVDCKNFI-VNLNSQ  415 (517)
Q Consensus       350 ~~-----~~~~i~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~~d~  415 (517)
                      ..     .....+++++.++|+..++....        |.|..++...........-...+.++|+|+++.|+ +-+..+
T Consensus        77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~  156 (246)
T PF08450_consen   77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVADGLGFPNGIAFSPDGKTLYVADSFNG  156 (246)
T ss_dssp             EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEEEESSEEEEEEETTSSEEEEEETTTT
T ss_pred             eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeEEEEecCcccccceEECCcchheeecccccc
Confidence            32     34578899999999977766543        56888888832244444556688999999999776 556688


Q ss_pred             eEEEEEcCCCCc---cceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEec-C
Q 042434          416 EIHMWDVAGKWE---KPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWN-P  491 (517)
Q Consensus       416 ~i~~~d~~~~~~---~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~-~  491 (517)
                      .|..|++.....   ....+...........-+++..+|++.++....+.|.++|.. |+.+..+......+++++|. +
T Consensus       157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~  235 (246)
T PF08450_consen  157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGP  235 (246)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEEST
T ss_pred             eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECC
Confidence            999999864322   112222112221123444557899988888788999999987 99888887666689999994 6


Q ss_pred             CCCcEEEEee
Q 042434          492 KRPKMLASAS  501 (517)
Q Consensus       492 ~~~~~l~s~~  501 (517)
                      +...+++|.+
T Consensus       236 ~~~~L~vTta  245 (246)
T PF08450_consen  236 DGKTLYVTTA  245 (246)
T ss_dssp             TSSEEEEEEB
T ss_pred             CCCEEEEEeC
Confidence            6545666543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.25  E-value=3e-08  Score=105.97  Aligned_cols=239  Identities=14%  Similarity=0.146  Sum_probs=154.4

Q ss_pred             EEEEECC-CCCEEEEeeCCCcEEEEEecCCCeeeEEEEecc--------------CCCCEEEEEECCCCCeEEEEe-CCC
Q 042434          226 WFVQFSN-NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRS--------------HQNPVSFVAWSPDDTKLLTCG-NAE  289 (517)
Q Consensus       226 ~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~--------------h~~~v~~l~~s~~~~~l~s~~-~dg  289 (517)
                      ..+++++ ++.++++-+.++.|++||.... .   ...+.+              +-.....+++.++++.|+++. .++
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~---i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~  646 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN-F---IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENH  646 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCC-E---EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCc
Confidence            4567877 4667777777889999997522 1   111211              112357899999888766654 456


Q ss_pred             eEEEEECCCCcEEEEeCCC-----------------CCceEEEEEeCC-CCeEEEeeCCCceeEEEEeCCCCeeEeeeCc
Q 042434          290 VLKLWDVETGICKHTFGDH-----------------GFIVSSCAWFPD-SKRLVCGSSDTEKGIFMCDCDGNEIKAWRGT  351 (517)
Q Consensus       290 ~i~iwd~~~~~~~~~~~~~-----------------~~~v~~i~~~~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~  351 (517)
                      .|+++|..++.. .++.+.                 -.....++++|+ +..+++.+.++.  |+.|+..+..+..+.+.
T Consensus       647 ~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~--I~v~d~~~g~v~~~~G~  723 (1057)
T PLN02919        647 ALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQ--IWEYNISDGVTRVFSGD  723 (1057)
T ss_pred             eEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCe--EEEEECCCCeEEEEecC
Confidence            899999877653 333110                 123467999994 555566566666  88888876555433221


Q ss_pred             --------------CCCceEEEEEccCCCEEE-EEeCCCcEEEEECCCceEEeec-----------------------cC
Q 042434          352 --------------RIPKVLDLAVTPDGENLI-SVLSDKDIRILNLGTYAERVIS-----------------------EE  393 (517)
Q Consensus       352 --------------~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~-----------------------~~  393 (517)
                                    .......++++|+++.++ +-+.++.|++||+.++......                       ..
T Consensus       724 G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l  803 (1057)
T PLN02919        724 GYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLL  803 (1057)
T ss_pred             CccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhc
Confidence                          112356799999998554 5556789999999875422111                       01


Q ss_pred             CCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCccc-----------CceEEEeecCCCCCcEEEEecCCCc
Q 042434          394 HPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQ-----------NKYVIRSCFGGLDGTFIASGSENSQ  462 (517)
Q Consensus       394 ~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-----------~~~~i~~~~~s~~~~~l~~~~~dg~  462 (517)
                      .....++++++|..+++.+.++.|++||..++.  +..+.+...           .-.....++++++|+.+++-+.++.
T Consensus       804 ~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~--v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~  881 (1057)
T PLN02919        804 QHPLGVLCAKDGQIYVADSYNHKIKKLDPATKR--VTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSL  881 (1057)
T ss_pred             cCCceeeEeCCCcEEEEECCCCEEEEEECCCCe--EEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCE
Confidence            134688999999988888899999999987652  222222110           0011233455789999999899999


Q ss_pred             EEEEecCCCce
Q 042434          463 IYIWNRRNSKP  473 (517)
Q Consensus       463 i~iwd~~~~~~  473 (517)
                      |++||+.+++.
T Consensus       882 Irvid~~~~~~  892 (1057)
T PLN02919        882 IRYLDLNKGEA  892 (1057)
T ss_pred             EEEEECCCCcc
Confidence            99999988764

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.25  E-value=2e-08  Score=96.69  Aligned_cols=257  Identities=12%  Similarity=0.091  Sum_probs=154.8

Q ss_pred             CCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEE-EEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCc
Q 042434          233 NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSF-VAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFI  311 (517)
Q Consensus       233 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~-l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  311 (517)
                      ++..++.++.+|.+..+|..+++..   ..... .+.+.+ ...  .+..++.++.+|.+..||.++|+.+..+......
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~---W~~~~-~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~  177 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKEL---WRAKL-SSEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPA  177 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEe---eeecc-CceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCc
Confidence            4667888888999999998776432   22211 122221 111  3456777888999999999999988776543221


Q ss_pred             eE-----EEEEeCCCCeEEEeeCCCceeEEEEeCCCCee-EeeeCcCC---Cc---eEEEEEcc--CCCEEEEEeCCCcE
Q 042434          312 VS-----SCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEI-KAWRGTRI---PK---VLDLAVTP--DGENLISVLSDKDI  377 (517)
Q Consensus       312 v~-----~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~-~~~~~~~~---~~---i~~~~~~~--~~~~l~~~~~dg~i  377 (517)
                      +.     +....  +..++.+..++.  ++.+|..+... -.......   ..   ...+.-+|  .+..+++++.+|.+
T Consensus       178 ~~~~~~~sp~~~--~~~v~~~~~~g~--v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l  253 (377)
T TIGR03300       178 LTLRGSASPVIA--DGGVLVGFAGGK--LVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRV  253 (377)
T ss_pred             eeecCCCCCEEE--CCEEEEECCCCE--EEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEE
Confidence            11     11111  346777777787  78888754332 21111000   00   00010111  35578888899999


Q ss_pred             EEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEe
Q 042434          378 RILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASG  457 (517)
Q Consensus       378 ~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  457 (517)
                      +.||..+++.............  ...+..+++++.+|.+..+|..++ .............  ....  ...+..++++
T Consensus       254 ~a~d~~tG~~~W~~~~~~~~~p--~~~~~~vyv~~~~G~l~~~d~~tG-~~~W~~~~~~~~~--~ssp--~i~g~~l~~~  326 (377)
T TIGR03300       254 AALDLRSGRVLWKRDASSYQGP--AVDDNRLYVTDADGVVVALDRRSG-SELWKNDELKYRQ--LTAP--AVVGGYLVVG  326 (377)
T ss_pred             EEEECCCCcEEEeeccCCccCc--eEeCCEEEEECCCCeEEEEECCCC-cEEEccccccCCc--cccC--EEECCEEEEE
Confidence            9999988873222211111122  235678888889999999999776 3333221111110  0000  1146688999


Q ss_pred             cCCCcEEEEecCCCceeEEecCCCCCee-EEEecCCCCcEEEEeeCCCcEEEe
Q 042434          458 SENSQIYIWNRRNSKPIEILSGHSMTVN-CVSWNPKRPKMLASASDDHTIRIW  509 (517)
Q Consensus       458 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~-~v~~~~~~~~~l~s~~~dg~v~iw  509 (517)
                      +.+|.|+++|..+|+.+..++.+...+. +.++. ++  .|+.++.||.|..|
T Consensus       327 ~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~--~l~v~~~dG~l~~~  376 (377)
T TIGR03300       327 DFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-GD--GLLVQTRDGDLYAF  376 (377)
T ss_pred             eCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-CC--EEEEEeCCceEEEe
Confidence            9999999999999999998886664433 33333 33  47789999999876

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.23  E-value=4.8e-09  Score=97.50  Aligned_cols=201  Identities=12%  Similarity=0.154  Sum_probs=140.2

Q ss_pred             ccCcEEEEEECCCC--CEEEE-----eeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeE-EEEeC--C--
Q 042434          221 HKNEVWFVQFSNNG--EYLAS-----SSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKL-LTCGN--A--  288 (517)
Q Consensus       221 h~~~v~~~~~s~~~--~~l~t-----~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l-~s~~~--d--  288 (517)
                      |...|+.+.+||.+  ..+|+     +|.-+.|+||..........+..-......=..+.|++-|+-| +.++.  |  
T Consensus       164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDkt  243 (566)
T KOG2315|consen  164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKT  243 (566)
T ss_pred             eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCC
Confidence            68889999999863  35554     3556789999885222211111111122333467888877533 22222  2  


Q ss_pred             -------CeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEE
Q 042434          289 -------EVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAV  361 (517)
Q Consensus       289 -------g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~  361 (517)
                             .++.+.+++...+...+ ...++|.++.|+|+++.|+++..---.++-++|.++..+..+..+   +-.++-|
T Consensus       244 n~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~eg---pRN~~~f  319 (566)
T KOG2315|consen  244 NASYYGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPEG---PRNTAFF  319 (566)
T ss_pred             CccccccceEEEEEecCceEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCCC---CccceEE
Confidence                   36888888744444444 558899999999999988775443333388889998887766554   4678899


Q ss_pred             ccCCCEEEEEeC---CCcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeC------CCeEEEEEcCCC
Q 042434          362 TPDGENLISVLS---DKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLN------SQEIHMWDVAGK  425 (517)
Q Consensus       362 ~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~------d~~i~~~d~~~~  425 (517)
                      +|.|++++.++-   .|.+-+||..+.+..........+-+.|+|||.++++++.      |+.++||+..+.
T Consensus       320 np~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~  392 (566)
T KOG2315|consen  320 NPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS  392 (566)
T ss_pred             CCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence            999999988775   4789999999977555555666788999999999999875      678999998764

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.22  E-value=1.1e-10  Score=121.53  Aligned_cols=194  Identities=13%  Similarity=0.136  Sum_probs=149.4

Q ss_pred             EeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEEC
Q 042434          217 ILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDV  296 (517)
Q Consensus       217 ~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~  296 (517)
                      .++.|-..|.++.-+|...+.+||+.||.|++|..-.+.+....++.  ....|+.+.|+.+|+.+..+..||.+.+|.+
T Consensus      2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~--g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA--GNSRVTRSRFNHQGNKFGIVDGDGDLSLWQA 2280 (2439)
T ss_pred             EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc--CcchhhhhhhcccCCceeeeccCCceeeccc
Confidence            34556778889999999999999999999999999766554444432  3488999999999999999999999999998


Q ss_pred             CCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeC---CCceeEEEEeCCCCe-eEeeeCcCCCceEEEEEccCCCEEEEEe
Q 042434          297 ETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSS---DTEKGIFMCDCDGNE-IKAWRGTRIPKVLDLAVTPDGENLISVL  372 (517)
Q Consensus       297 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~---d~~v~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~  372 (517)
                      . .++....+.|........|-.  ..+++++.   ++.  +.+||..-.. .......|.+.++++++.|....+++|+
T Consensus      2281 ~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n--~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisgg 2355 (2439)
T KOG1064|consen 2281 S-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRN--VCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGG 2355 (2439)
T ss_pred             C-CcceeccccCCccccceeeee--hhhhccccCCCCCc--ccchhcccCcccceeeeecCCCceEEEEcCcceEEEecC
Confidence            6 666667788888888888875  56666543   455  7777764211 1112255556899999999999999999


Q ss_pred             CCCcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 042434          373 SDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK  425 (517)
Q Consensus       373 ~dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~  425 (517)
                      .+|.|++||++..+.......       +. ...++++++..|.++||++...
T Consensus      2356 r~G~v~l~D~rqrql~h~~~~-------~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2356 RKGEVCLFDIRQRQLRHTFQA-------LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred             CcCcEEEeehHHHHHHHHhhh-------hh-hhheeeccCcccceEEEEcccc
Confidence            999999999988662111111       33 5578999999999999999765

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.22  E-value=1.2e-10  Score=107.53  Aligned_cols=284  Identities=14%  Similarity=0.198  Sum_probs=181.2

Q ss_pred             cEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCC----eeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCC
Q 042434          214 TVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDS----KLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAE  289 (517)
Q Consensus       214 ~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~----~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg  289 (517)
                      .+..+.||...|..++--.+.+-+++++.|.+|++|.+....    +..+..++..|..+|.++.|-.+.++++++  ||
T Consensus       727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~  804 (1034)
T KOG4190|consen  727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG  804 (1034)
T ss_pred             eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence            456788999999999887788889999999999999986432    224667889999999999999998888865  88


Q ss_pred             eEEEEECCCCcEEEEeC--CCCCceEEEEEeCC--CCeEEEe-eCCCceeEEEEeCCCCe----eEeee-CcCCCceEEE
Q 042434          290 VLKLWDVETGICKHTFG--DHGFIVSSCAWFPD--SKRLVCG-SSDTEKGIFMCDCDGNE----IKAWR-GTRIPKVLDL  359 (517)
Q Consensus       290 ~i~iwd~~~~~~~~~~~--~~~~~v~~i~~~~~--~~~l~~~-~~d~~v~i~~~~~~~~~----~~~~~-~~~~~~i~~~  359 (517)
                      .|.+||.--|+.+..+.  ...+.+..+..-++  ...+..| +...+  +..+|.+...    .+.-. ......+.++
T Consensus       805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeST--VKl~DaRsce~~~E~kVcna~~Pna~~R~i  882 (1034)
T KOG4190|consen  805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAEST--VKLFDARSCEWTCELKVCNAPGPNALTRAI  882 (1034)
T ss_pred             cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhh--heeeecccccceeeEEeccCCCCchheeEE
Confidence            99999998887665432  12333344444443  3334333 55666  6667766322    22221 2223468899


Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCceEEeeccCCCeeEEEE-cCCCCEEEEEeCCCeEEE-EEcCCCCccceEEeCccc
Q 042434          360 AVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLSV-SVDCKNFIVNLNSQEIHM-WDVAGKWEKPFKYTGHSQ  437 (517)
Q Consensus       360 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~-s~~~~~l~~~~~d~~i~~-~d~~~~~~~~~~~~~~~~  437 (517)
                      +..+.|+.++++-.+|.|.+.|.++++...........-+.. .|..+.++....|..+.+ |....+ ...........
T Consensus       883 aVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaapsdq~L~~saldHslaVnWhaldg-imh~q~kpppe  961 (1034)
T KOG4190|consen  883 AVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAAPSDQALAQSALDHSLAVNWHALDG-IMHLQDKPPPE  961 (1034)
T ss_pred             EeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcCchhHHHHhhcccceeEeeehhcCC-eeeeccCCCCc
Confidence            999999999999999999999999987332211111111111 244455666666777777 765443 11111111111


Q ss_pred             CceEEEeecCCCCCcEEEEecCCCcEEEEecC-C---CceeEEec--CCCCCeeEEEecCCCCcEEEEeeCCCcEEE
Q 042434          438 NKYVIRSCFGGLDGTFIASGSENSQIYIWNRR-N---SKPIEILS--GHSMTVNCVSWNPKRPKMLASASDDHTIRI  508 (517)
Q Consensus       438 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~-~---~~~~~~~~--~h~~~v~~v~~~~~~~~~l~s~~~dg~v~i  508 (517)
                      +     ..+...-|.-++++.....+.+|.-. .   ...+..+.  ...+..++++.-|-+ .-+..|...|.|.+
T Consensus       962 p-----ahflqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN-~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen  962 P-----AHFLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLN-CAFLAGNEHGAIAL 1032 (1034)
T ss_pred             c-----hhhhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeecccc-chhhccCCCCceee
Confidence            1     11112335567777777778888421 1   11122222  234678888888877 56777888888765

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.21  E-value=3.8e-09  Score=97.93  Aligned_cols=293  Identities=14%  Similarity=0.142  Sum_probs=165.7

Q ss_pred             HHHHHHhccccccCCCCCc-cccccCCCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeC-----------CC
Q 042434          177 VETAVTSQIDSCQYHNSSV-AISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSS-----------DC  244 (517)
Q Consensus       177 ~~~~~~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~-----------dg  244 (517)
                      ++....+--+...+.|... .+++...++..|--.....++.+. | ..|.-+.|||+.+||+|-+.           ..
T Consensus       205 ie~RenWTetyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~  282 (698)
T KOG2314|consen  205 IEERENWTETYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRFY-H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQ  282 (698)
T ss_pred             hhhhhcceeeeEEecCCceEEEEEeccceeeecCccHHHHHhcc-C-CCceeeecCCccceEEEecCCccccCcccCCCc
Confidence            3444445444455555444 445555555555544444444443 3 34778999999999999653           24


Q ss_pred             cEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeE
Q 042434          245 SAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRL  324 (517)
Q Consensus       245 ~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l  324 (517)
                      .++|||+.+|........+.+....-.-..||.|++++|--..+ +|.||+..+...+..-.-.-..|....|+|.+..|
T Consensus       283 ~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~~~ll  361 (698)
T KOG2314|consen  283 QLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLL  361 (698)
T ss_pred             eEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCCcceE
Confidence            69999998885443333322222222346899999999987664 78888876533322111223445566666666555


Q ss_pred             EEeeCCCc---eeEE-----------------------EEeCCC-----------------------------CeeEeee
Q 042434          325 VCGSSDTE---KGIF-----------------------MCDCDG-----------------------------NEIKAWR  349 (517)
Q Consensus       325 ~~~~~d~~---v~i~-----------------------~~~~~~-----------------------------~~~~~~~  349 (517)
                      |.=+..-.   .++-                       .|..+|                             +.+....
T Consensus       362 AYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~  441 (698)
T KOG2314|consen  362 AYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEV  441 (698)
T ss_pred             EEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCcee
Confidence            53221100   0000                       111111                             1110000


Q ss_pred             CcCCCceEEEEEccCCCEEEEEeC---CCcEEEEECCCce----EEeeccCCCeeEEEEcCCCCEEEEEe---CCCeEEE
Q 042434          350 GTRIPKVLDLAVTPDGENLISVLS---DKDIRILNLGTYA----ERVISEEHPITSLSVSVDCKNFIVNL---NSQEIHM  419 (517)
Q Consensus       350 ~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~---~d~~i~~  419 (517)
                      ..-...|...+|-|.|+.+++.+.   ..++.+|.+.+..    ..........+.+.|+|.|++++++.   ..|.+.+
T Consensus       442 velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F  521 (698)
T KOG2314|consen  442 VELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEF  521 (698)
T ss_pred             eecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEE
Confidence            111235778899999998776654   3478888877422    12222345678899999999988764   4789999


Q ss_pred             EEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecC
Q 042434          420 WDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSG  479 (517)
Q Consensus       420 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  479 (517)
                      +|+............|..    .+-+.|.|.|+|+++++.-+..+   +.+|-.+.++.|
T Consensus       522 ~D~~~a~~k~~~~~eh~~----at~veWDPtGRYvvT~ss~wrhk---~d~GYri~tfqG  574 (698)
T KOG2314|consen  522 YDTDYADLKDTASPEHFA----ATEVEWDPTGRYVVTSSSSWRHK---VDNGYRIFTFQG  574 (698)
T ss_pred             EecchhhhhhccCccccc----cccceECCCCCEEEEeeehhhhc---cccceEEEEeec
Confidence            998642122222222322    44556799999999998643221   234444444443

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.21  E-value=2.8e-08  Score=95.75  Aligned_cols=260  Identities=10%  Similarity=0.025  Sum_probs=157.5

Q ss_pred             CCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCce
Q 042434          233 NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIV  312 (517)
Q Consensus       233 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v  312 (517)
                      .+..+++++.+|.+..+|..+++..   ...............  ++..++.++.+|.+..+|..+|+.+....... .+
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~---W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~  137 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRL---WRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EV  137 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEe---eeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-ee
Confidence            4567888888999999998776432   222222211112222  46788888999999999999999887664332 22


Q ss_pred             EE-EEEeCCCCeEEEeeCCCceeEEEEeCCCCe-eEeeeCcCCCce-----EEEEEccCCCEEEEEeCCCcEEEEECCCc
Q 042434          313 SS-CAWFPDSKRLVCGSSDTEKGIFMCDCDGNE-IKAWRGTRIPKV-----LDLAVTPDGENLISVLSDKDIRILNLGTY  385 (517)
Q Consensus       313 ~~-i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~-~~~~~~~~~~~i-----~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  385 (517)
                      .+ ...  .+..++.++.++.  ++.+|..+.. +-....... ..     .+...  .+..++.+..++.+..+|..++
T Consensus       138 ~~~p~v--~~~~v~v~~~~g~--l~a~d~~tG~~~W~~~~~~~-~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG  210 (377)
T TIGR03300       138 LSPPLV--ANGLVVVRTNDGR--LTALDAATGERLWTYSRVTP-ALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTG  210 (377)
T ss_pred             ecCCEE--ECCEEEEECCCCe--EEEEEcCCCceeeEEccCCC-ceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCC
Confidence            21 112  3456777778888  8888886433 332222110 00     01111  1246778888899999999887


Q ss_pred             eEEe-eccCC-----Ce---eEEEEcC--CCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEE
Q 042434          386 AERV-ISEEH-----PI---TSLSVSV--DCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFI  454 (517)
Q Consensus       386 ~~~~-~~~~~-----~i---~~~~~s~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  454 (517)
                      +... .....     .+   ..+.-+|  .+..+++++.+|.++.||..++ ......... ..    ..  ...++..+
T Consensus       211 ~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG-~~~W~~~~~-~~----~~--p~~~~~~v  282 (377)
T TIGR03300       211 QPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG-RVLWKRDAS-SY----QG--PAVDDNRL  282 (377)
T ss_pred             CEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC-cEEEeeccC-Cc----cC--ceEeCCEE
Confidence            6221 11100     00   0011111  3567888888999999999776 333333211 10    00  11246678


Q ss_pred             EEecCCCcEEEEecCCCceeEEecCCC-CCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434          455 ASGSENSQIYIWNRRNSKPIEILSGHS-MTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSE  516 (517)
Q Consensus       455 ~~~~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~  516 (517)
                      ++++.||.++.+|..+|+.+....... ....+...  .+ ..+++++.||.|+++|..+++.
T Consensus       283 yv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g-~~l~~~~~~G~l~~~d~~tG~~  342 (377)
T TIGR03300       283 YVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VG-GYLVVGDFEGYLHWLSREDGSF  342 (377)
T ss_pred             EEECCCCeEEEEECCCCcEEEccccccCCccccCEE--EC-CEEEEEeCCCEEEEEECCCCCE
Confidence            888899999999999998876653211 22222222  24 4788899999999999988764

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.20  E-value=3.5e-10  Score=107.99  Aligned_cols=283  Identities=16%  Similarity=0.214  Sum_probs=180.7

Q ss_pred             cCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEec-cCCCCEEEEEECCCC--CeEEEEeCCCeEEEEECCC
Q 042434          222 KNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLR-SHQNPVSFVAWSPDD--TKLLTCGNAEVLKLWDVET  298 (517)
Q Consensus       222 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~--~~l~s~~~dg~i~iwd~~~  298 (517)
                      .+.+.++..+|.|+-+|.++.-| +.+-|+....  .+..-+. ...-.|-...|+|..  .+-++......-.+|++..
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~--~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~  100 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPF--TPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAK  100 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcC-eEEEeccCCC--CCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhc
Confidence            56777889999999999998877 4566665332  2222221 123347778888743  3333334445667898753


Q ss_pred             C---cEEEEeCCCCCceEEEEEeCCC-CeEEEeeCCCceeEEEEeCCC--CeeEeeeCcCCCceEEEEEccCCCEEEEEe
Q 042434          299 G---ICKHTFGDHGFIVSSCAWFPDS-KRLVCGSSDTEKGIFMCDCDG--NEIKAWRGTRIPKVLDLAVTPDGENLISVL  372 (517)
Q Consensus       299 ~---~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~d~~v~i~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  372 (517)
                      .   ..-..+.+|...|+.+.|+|.. ..+++++.|..  +..||++.  ..+..+..-+. ....++|+.....+.+.+
T Consensus       101 ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~--vh~wd~rSp~~p~ys~~~w~s-~asqVkwnyk~p~vlass  177 (1081)
T KOG0309|consen  101 SSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTY--VHAWDMRSPHRPFYSTSSWRS-AASQVKWNYKDPNVLASS  177 (1081)
T ss_pred             CCccceEEEEecCccceeccccCCCCCcceeecccccc--ceeeeccCCCcceeeeecccc-cCceeeecccCcchhhhc
Confidence            2   3344567899999999999964 57888999988  66777764  44444444332 566788988777788888


Q ss_pred             CCCcEEEEECCCce---EEeeccCCCeeEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCC
Q 042434          373 SDKDIRILNLGTYA---ERVISEEHPITSLSVSV-DCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGG  448 (517)
Q Consensus       373 ~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s  448 (517)
                      ....|.+||++.+.   .....+...+..+.|.. ....+.+++.|++++.||..................  +...+ -
T Consensus       178 hg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~pi--w~~r~-~  254 (1081)
T KOG0309|consen  178 HGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPI--WRGRY-L  254 (1081)
T ss_pred             cCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcc--eeccc-c
Confidence            88899999998877   33444555666666654 234578888999999999865422222221111111  11111 1


Q ss_pred             C--CCcEEEEecCCCcEE---------EEecCC-CceeEEecCCCCCeeEEEecCCC---------CcEEEEeeCCCcEE
Q 042434          449 L--DGTFIASGSENSQIY---------IWNRRN-SKPIEILSGHSMTVNCVSWNPKR---------PKMLASASDDHTIR  507 (517)
Q Consensus       449 ~--~~~~l~~~~~dg~i~---------iwd~~~-~~~~~~~~~h~~~v~~v~~~~~~---------~~~l~s~~~dg~v~  507 (517)
                      |  +|.++.-.-.+..+.         .|+..+ .++++++.||.+.|...-|-..+         ...|+|-|.|.+++
T Consensus       255 Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lr  334 (1081)
T KOG0309|consen  255 PFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLR  334 (1081)
T ss_pred             ccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceE
Confidence            2  222222111122333         344333 36899999999999888775422         25799999999999


Q ss_pred             EeCCCC
Q 042434          508 IWGPCQ  513 (517)
Q Consensus       508 iw~~~~  513 (517)
                      +|.+.+
T Consensus       335 lWpI~~  340 (1081)
T KOG0309|consen  335 LWPIDS  340 (1081)
T ss_pred             eeeccH
Confidence            998864

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.19  E-value=6e-08  Score=101.74  Aligned_cols=284  Identities=14%  Similarity=0.173  Sum_probs=178.8

Q ss_pred             CcEEEEEECCCCCE--EEEeeCCC--cEEEEEecCCCeeeEEEEec-----cCCCCEEEEEECCCCCeEEEEeCCCeEEE
Q 042434          223 NEVWFVQFSNNGEY--LASSSSDC--SAIIWKVLEDSKLTLKHTLR-----SHQNPVSFVAWSPDDTKLLTCGNAEVLKL  293 (517)
Q Consensus       223 ~~v~~~~~s~~~~~--l~t~~~dg--~i~iw~~~~~~~~~~~~~~~-----~h~~~v~~l~~s~~~~~l~s~~~dg~i~i  293 (517)
                      ..+...+|.+..+.  ++++....  .|.+.....+.....+..+.     ...+.|.++.+-++...++.+..+|.|.+
T Consensus        22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~  101 (928)
T PF04762_consen   22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL  101 (928)
T ss_pred             cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence            35666677665443  33333332  34444443333223333332     23578999999999999999999999999


Q ss_pred             E----ECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEE--EeC------C--------------CCeeEe
Q 042434          294 W----DVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM--CDC------D--------------GNEIKA  347 (517)
Q Consensus       294 w----d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~--~~~------~--------------~~~~~~  347 (517)
                      .    +..+.. +.....-+..|.+++||||+..++..+.++++.+..  |+.      .              |++-..
T Consensus       102 ~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQ  180 (928)
T PF04762_consen  102 VREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQ  180 (928)
T ss_pred             EEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCc
Confidence            9    544432 333334578899999999999999999998843221  110      0              011111


Q ss_pred             eeC------------c-----------CCCceEEEEEccCCCEEEEEeC---C---CcEEEEECCCceEEee--ccCCCe
Q 042434          348 WRG------------T-----------RIPKVLDLAVTPDGENLISVLS---D---KDIRILNLGTYAERVI--SEEHPI  396 (517)
Q Consensus       348 ~~~------------~-----------~~~~i~~~~~~~~~~~l~~~~~---d---g~i~i~d~~~~~~~~~--~~~~~i  396 (517)
                      +.+            .           ....-..++|-.||.++++.+-   .   ..++||+-. +.....  ...+--
T Consensus       181 F~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe  259 (928)
T PF04762_consen  181 FHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLE  259 (928)
T ss_pred             cCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCcc
Confidence            110            0           1113456889999999998875   2   478999866 332111  223334


Q ss_pred             eEEEEcCCCCEEEEEeC---CCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCc-
Q 042434          397 TSLSVSVDCKNFIVNLN---SQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSK-  472 (517)
Q Consensus       397 ~~~~~s~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-  472 (517)
                      .+++|.|.|+.+++...   ...|.+|.-++.....+.+.. ......+..+.|++|+..||....|. |.+|-..+.. 
T Consensus       260 ~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~-~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHW  337 (928)
T PF04762_consen  260 GALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRF-DPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHW  337 (928)
T ss_pred             CCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCC-CCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEE
Confidence            67899999999988865   346778876553222233322 12233467788899999999987665 9999988764 


Q ss_pred             -eeEEecC-CCCCeeEEEecCCCCcEEEEeeCCCcEEEeC
Q 042434          473 -PIEILSG-HSMTVNCVSWNPKRPKMLASASDDHTIRIWG  510 (517)
Q Consensus       473 -~~~~~~~-h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~  510 (517)
                       +...+.. ....+..+.|+|..+..|...+.+|.+..++
T Consensus       338 YLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~  377 (928)
T PF04762_consen  338 YLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYD  377 (928)
T ss_pred             EEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEE
Confidence             3333332 2344566999998888888888877776543

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.16  E-value=2.9e-09  Score=102.51  Aligned_cols=285  Identities=13%  Similarity=0.129  Sum_probs=183.5

Q ss_pred             ccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCC------------CCeEEEEeCC
Q 042434          221 HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPD------------DTKLLTCGNA  288 (517)
Q Consensus       221 h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~------------~~~l~s~~~d  288 (517)
                      |...-.++.|+|.| ++|.|+. ..|.|-|..   ..+.+..+..|...|+.+.|.|-            .-.||++...
T Consensus        14 ~~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~---s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~   88 (1062)
T KOG1912|consen   14 SRSNRNAADWSPSG-LIAYGSH-SLVSVVDSR---SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADIS   88 (1062)
T ss_pred             CcccccccccCccc-eEEEecC-ceEEEEehh---hhhhhhccccCccceeEEEeccCCCchhccCccccceeEEecccc
Confidence            33446678899987 6777765 478888874   44666788889999999999872            1357788889


Q ss_pred             CeEEEEECCCCcEEEEeCCCCCceEEEEEeCC---C-CeEEEeeCCCceeEEEEeCCCC-eeEeeeCcCCCceEEEEEcc
Q 042434          289 EVLKLWDVETGICKHTFGDHGFIVSSCAWFPD---S-KRLVCGSSDTEKGIFMCDCDGN-EIKAWRGTRIPKVLDLAVTP  363 (517)
Q Consensus       289 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~---~-~~l~~~~~d~~v~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~  363 (517)
                      |.|.+||...+..+..+..+..++..++|-+.   . ..+++-.....  +..|+..++ ..-.....+ ....|+.+.|
T Consensus        89 GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~--lvLwntdtG~k~Wk~~ys~-~iLs~f~~DP  165 (1062)
T KOG1912|consen   89 GRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSST--LVLWNTDTGEKFWKYDYSH-EILSCFRVDP  165 (1062)
T ss_pred             CcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcE--EEEEEccCCceeeccccCC-cceeeeeeCC
Confidence            99999999999988889899999999999873   3 34555555555  778876643 333333333 2455688887


Q ss_pred             -CCCEEEEEeCCCcEEEEECCCce-------EEe--eccCC-------------------------CeeEEEEcCCCCEE
Q 042434          364 -DGENLISVLSDKDIRILNLGTYA-------ERV--ISEEH-------------------------PITSLSVSVDCKNF  408 (517)
Q Consensus       364 -~~~~l~~~~~dg~i~i~d~~~~~-------~~~--~~~~~-------------------------~i~~~~~s~~~~~l  408 (517)
                       |.+.+..-+..|.+.+-+.-...       ...  ..+..                         -...++|+|.-+.+
T Consensus       166 fd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~  245 (1062)
T KOG1912|consen  166 FDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNI  245 (1062)
T ss_pred             CCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhce
Confidence             55566666777777666542211       111  11000                         01235678877777


Q ss_pred             EEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCC----------------c
Q 042434          409 IVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS----------------K  472 (517)
Q Consensus       409 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----------------~  472 (517)
                      +...-...+.++|++-. .......-.......+..+. .|....++++..||.+.+|-.+..                .
T Consensus       246 lfi~~prellv~dle~~-~~l~vvpier~~akfv~vlP-~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~  323 (1062)
T KOG1912|consen  246 LFITFPRELLVFDLEYE-CCLAVVPIERGGAKFVDVLP-DPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGE  323 (1062)
T ss_pred             EEEEeccceEEEcchhh-ceeEEEEeccCCcceeEecc-CCCcceEEEEecCCeEEEEEeeccCccccccchhhcccccc
Confidence            77788888999999755 34444433333333344433 456678999999999999976542                1


Q ss_pred             eeEEecC-CCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434          473 PIEILSG-HSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS  515 (517)
Q Consensus       473 ~~~~~~~-h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~  515 (517)
                      .+..+.. .+-.+...+..|..+..++.--.+|.+.+|.+.+++
T Consensus       324 Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~r  367 (1062)
T KOG1912|consen  324 QVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGR  367 (1062)
T ss_pred             ceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCC
Confidence            1111111 112233334455544555555667888899988654

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.16  E-value=4.7e-08  Score=89.14  Aligned_cols=149  Identities=17%  Similarity=0.204  Sum_probs=119.4

Q ss_pred             ccccCcEEEEEECCCCCEEEEeeCCC-cEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECC
Q 042434          219 TEHKNEVWFVQFSNNGEYLASSSSDC-SAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVE  297 (517)
Q Consensus       219 ~~h~~~v~~~~~s~~~~~l~t~~~dg-~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~  297 (517)
                      -+|.+.|.-..+..+++-++.|..|| .+-|+|..++.    .+.+...-+.|.++..+|+|++++.+.....+.+.|++
T Consensus       356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e----~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vidid  431 (668)
T COG4946         356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE----VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDID  431 (668)
T ss_pred             cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce----EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEec
Confidence            36888899999999888999999999 89999986552    24455567889999999999999999988999999999


Q ss_pred             CCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCce--eEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEe
Q 042434          298 TGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEK--GIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVL  372 (517)
Q Consensus       298 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v--~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  372 (517)
                      +|+....-+...+-|+...|+|+++++|-+-.+|.+  .|.++|+.+..+........ .=.+-+|.|++++|..-+
T Consensus       432 ngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta-~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         432 NGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTA-YDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             CCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcc-cccCcccCCCCcEEEEEe
Confidence            998776656677889999999999999999888754  37788888876655544331 334567888998776544

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.12  E-value=2.8e-10  Score=105.13  Aligned_cols=210  Identities=11%  Similarity=0.196  Sum_probs=148.2

Q ss_pred             EEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCC-------CcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCc
Q 042434          260 KHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVET-------GICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTE  332 (517)
Q Consensus       260 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~  332 (517)
                      ...+.+|+..|..++--.+.+-+++++.|.+|++|.++.       ..|..+++.|+.+|.++.|..+.++++++  ||.
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g  805 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG  805 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence            356789999999988877888999999999999998853       35778889999999999999998888765  454


Q ss_pred             eeEEEEeCC-CCeeEee-eCcCCCceEEEEEcc--CCCEEEEE-eCCCcEEEEECCCce----EEe---eccCCCeeEEE
Q 042434          333 KGIFMCDCD-GNEIKAW-RGTRIPKVLDLAVTP--DGENLISV-LSDKDIRILNLGTYA----ERV---ISEEHPITSLS  400 (517)
Q Consensus       333 v~i~~~~~~-~~~~~~~-~~~~~~~i~~~~~~~--~~~~l~~~-~~dg~i~i~d~~~~~----~~~---~~~~~~i~~~~  400 (517)
                        +.+||.- +..+... .....+.+..+..-+  +...+++| +...+|+++|.+...    ...   ......+.+++
T Consensus       806 --iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia  883 (1034)
T KOG4190|consen  806 --IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA  883 (1034)
T ss_pred             --ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence              8888874 3333211 111222333333333  33344444 678899999998876    111   23345688999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEE-EecCCCceeEEec
Q 042434          401 VSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYI-WNRRNSKPIEILS  478 (517)
Q Consensus       401 ~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~~  478 (517)
                      +.+.|++++++-.+|+|.+.|.+++ ..+..+......   +-..+ .|..+.++....|.++.+ |....|....+.+
T Consensus       884 Va~~GN~lAa~LSnGci~~LDaR~G-~vINswrpmecd---llqla-apsdq~L~~saldHslaVnWhaldgimh~q~k  957 (1034)
T KOG4190|consen  884 VADKGNKLAAALSNGCIAILDARNG-KVINSWRPMECD---LLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDK  957 (1034)
T ss_pred             eccCcchhhHHhcCCcEEEEecCCC-ceeccCCcccch---hhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccC
Confidence            9999999999999999999999887 444333322222   11112 466778888888999988 9887776555554

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.11  E-value=2.6e-08  Score=85.32  Aligned_cols=202  Identities=12%  Similarity=0.088  Sum_probs=134.1

Q ss_pred             cCcEEEEEECC---CCC-EEEEeeCCCcEEEEEecCCCeeeEEEEeccCCC---CEEEEEECCCCCeEEEEeCCCeEEEE
Q 042434          222 KNEVWFVQFSN---NGE-YLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQN---PVSFVAWSPDDTKLLTCGNAEVLKLW  294 (517)
Q Consensus       222 ~~~v~~~~~s~---~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~---~v~~l~~s~~~~~l~s~~~dg~i~iw  294 (517)
                      .+.+..+.|..   +|. .++-+..+|.|.++.............+..-.-   ...++.|++.+..++++-.+|.+.+-
T Consensus        69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v  148 (339)
T KOG0280|consen   69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV  148 (339)
T ss_pred             ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence            44556666653   455 566677789999998753322222222222111   24578899999999999999999866


Q ss_pred             ECCCCcEEE--EeCCCCCceEEEEEeC-CCCeEEEeeCCCceeEEEEeCC--CCeeEeeeCcCCCceEEEEEcc-CCCEE
Q 042434          295 DVETGICKH--TFGDHGFIVSSCAWFP-DSKRLVCGSSDTEKGIFMCDCD--GNEIKAWRGTRIPKVLDLAVTP-DGENL  368 (517)
Q Consensus       295 d~~~~~~~~--~~~~~~~~v~~i~~~~-~~~~l~~~~~d~~v~i~~~~~~--~~~~~~~~~~~~~~i~~~~~~~-~~~~l  368 (517)
                      +........  .++.|....+...|+. +.+.+++|+.|+.  +.-||.+  +..+......|...|.++.-+| .+.++
T Consensus       149 ~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~--l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I  226 (339)
T KOG0280|consen  149 YETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGS--LSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYI  226 (339)
T ss_pred             ecceeeeeecccccccceeeeeeecccCCCceEEecCCCce--EEEEEecCCcceeeecceeeecceEEEecCCCCCceE
Confidence            655554433  7789999999999986 4568899999999  7777776  2223222233445788887776 46799


Q ss_pred             EEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCC-EEEEEeCCCeEEEEEcCCC
Q 042434          369 ISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCK-NFIVNLNSQEIHMWDVAGK  425 (517)
Q Consensus       369 ~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~-~l~~~~~d~~i~~~d~~~~  425 (517)
                      ++|+.|-.|++||.++..  .......+.|..+..+|.-. .+++++.-+..++.+....
T Consensus       227 ~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~  286 (339)
T KOG0280|consen  227 ATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDK  286 (339)
T ss_pred             EEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEeccc
Confidence            999999999999999655  22333457889999998532 2333333334566666543

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.10  E-value=2.8e-09  Score=91.70  Aligned_cols=274  Identities=19%  Similarity=0.292  Sum_probs=171.0

Q ss_pred             ccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCC--eeeEEEEeccCC------------CCEEEEEECCCC--CeEEE
Q 042434          221 HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDS--KLTLKHTLRSHQ------------NPVSFVAWSPDD--TKLLT  284 (517)
Q Consensus       221 h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~--~~~~~~~~~~h~------------~~v~~l~~s~~~--~~l~s  284 (517)
                      ..+.|+++.|...|.||++|...|.|.++.-....  ..+....+++|.            ..|..+.|..++  ..++.
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            46789999999999999999999999999764321  233344566664            357788887654  45666


Q ss_pred             EeCCCeEEEEECCCCcEEEE--------eC-CCCCceEEEE------EeCCCCeEEEeeCCCceeEEEEeCCCCeeEeee
Q 042434          285 CGNAEVLKLWDVETGICKHT--------FG-DHGFIVSSCA------WFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWR  349 (517)
Q Consensus       285 ~~~dg~i~iwd~~~~~~~~~--------~~-~~~~~v~~i~------~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~  349 (517)
                      .+.|.+|++|.+........        +. ...+++++..      .+... .++++               .+.+...
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd-~iiaa---------------~p~rvya  168 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHD-EIIAA---------------KPCRVYA  168 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccc-eEEEe---------------ccceecc
Confidence            67899999999865422111        10 1122222110      00000 11111               1112222


Q ss_pred             CcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce----E-Eeecc-----CCCeeEEEEcCC-CCEEEEEeCCCeEE
Q 042434          350 GTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA----E-RVISE-----EHPITSLSVSVD-CKNFIVNLNSQEIH  418 (517)
Q Consensus       350 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~-~~~~~-----~~~i~~~~~s~~-~~~l~~~~~d~~i~  418 (517)
                      ..|.-.+.++.++.|...++++ .|=.|.+|++....    . -..++     ..-|++..|+|. ...+...+..|.|+
T Consensus       169 NaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik  247 (460)
T COG5170         169 NAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK  247 (460)
T ss_pred             ccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence            3343468899999998887765 56678899886543    1 11112     124788899995 45677778899999


Q ss_pred             EEEcCCC-----CccceE-------EeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCC-ceeEEecCCC----
Q 042434          419 MWDVAGK-----WEKPFK-------YTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS-KPIEILSGHS----  481 (517)
Q Consensus       419 ~~d~~~~-----~~~~~~-------~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~h~----  481 (517)
                      +-|++..     ......       ..........|.-..|+++|+|+++-+. -++++||++.. .++.+++-|.    
T Consensus       248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~  326 (460)
T COG5170         248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMD  326 (460)
T ss_pred             ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHH
Confidence            9999732     111111       1111222344666677999999998654 47999998865 4777775542    


Q ss_pred             --------CCe---eEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434          482 --------MTV---NCVSWNPKRPKMLASASDDHTIRIWGPCQ  513 (517)
Q Consensus       482 --------~~v---~~v~~~~~~~~~l~s~~~dg~v~iw~~~~  513 (517)
                              ..|   ..+.|+.+. ..+.+|+..+..-||-..+
T Consensus       327 ~l~d~YEnDaifdkFeisfSgd~-~~v~sgsy~NNfgiyp~~s  368 (460)
T COG5170         327 ELNDVYENDAIFDKFEISFSGDD-KHVLSGSYSNNFGIYPTDS  368 (460)
T ss_pred             HHHhhhhccceeeeEEEEecCCc-ccccccccccceeeecccc
Confidence                    233   347788887 6788999888888877543

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.10  E-value=3.4e-07  Score=78.85  Aligned_cols=239  Identities=12%  Similarity=0.100  Sum_probs=133.7

Q ss_pred             EEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEe---ccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEE
Q 042434          227 FVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTL---RSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKH  303 (517)
Q Consensus       227 ~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~---~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~  303 (517)
                      .++.+++|+.||.- .|..|.|=...++-. ..+...   +...-.=..++||||+..||.+...|+|+++|+.. ..+.
T Consensus         2 ~~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~-si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf   78 (282)
T PF15492_consen    2 HLALSSDGKLLAIL-QDQCIEIRSAKDDFS-SIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELF   78 (282)
T ss_pred             ceeecCCCcEEEEE-eccEEEEEeccCCch-heeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeE
Confidence            46778899988876 566777766543211 111222   22223357899999999999999999999999864 3333


Q ss_pred             EeCC-------CCCceEEEEEeCC------CCeEEEeeCCCceeEEEEeCCC----Cee--EeeeCcCCCceEEEEEccC
Q 042434          304 TFGD-------HGFIVSSCAWFPD------SKRLVCGSSDTEKGIFMCDCDG----NEI--KAWRGTRIPKVLDLAVTPD  364 (517)
Q Consensus       304 ~~~~-------~~~~v~~i~~~~~------~~~l~~~~~d~~v~i~~~~~~~----~~~--~~~~~~~~~~i~~~~~~~~  364 (517)
                      .+..       ....|..+.|.+.      ...|++-..+|.++-+.....+    ...  ..+..+....|.++.++|.
T Consensus        79 ~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~  158 (282)
T PF15492_consen   79 VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK  158 (282)
T ss_pred             EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC
Confidence            3322       2356777777653      2256667777776555554321    111  2233344457999999999


Q ss_pred             CCEEEEEeCCCcEEEEECCCceEEeeccCCCeeEEEEcCCCCE-E-EEEeCCCe------EEEEEcCCCCccceEEeCcc
Q 042434          365 GENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKN-F-IVNLNSQE------IHMWDVAGKWEKPFKYTGHS  436 (517)
Q Consensus       365 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~-l-~~~~~d~~------i~~~d~~~~~~~~~~~~~~~  436 (517)
                      .+.|++|+....      ++  .........+++-.+-.+..+ . +....++.      -.+|.+-+    ...+....
T Consensus       159 h~LLlVgG~~~~------~~--~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~----~~~fs~~~  226 (282)
T PF15492_consen  159 HRLLLVGGCEQN------QD--GMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPS----FKFFSRQG  226 (282)
T ss_pred             CCEEEEeccCCC------CC--ccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccc----eeeeeccc
Confidence            998888775432      00  000111111222222111111 1 11111111      12222211    11111111


Q ss_pred             cCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCC
Q 042434          437 QNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGH  480 (517)
Q Consensus       437 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h  480 (517)
                      .....+-.+..||||..||+...+|.|.+|++.+-++......+
T Consensus       227 ~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~  270 (282)
T PF15492_consen  227 QEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD  270 (282)
T ss_pred             cCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence            11222334445999999999999999999999988777766543

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.06  E-value=7.1e-08  Score=81.58  Aligned_cols=191  Identities=12%  Similarity=0.040  Sum_probs=130.7

Q ss_pred             CCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCC-CCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCc
Q 042434          233 NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPD-DTKLLTCGNAEVLKLWDVETGICKHTFGDHGFI  311 (517)
Q Consensus       233 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  311 (517)
                      .-.+||.|+..|...+|...+...  .......|...|+-+.=..| ...+..++.|.++++.+++.+..........-.
T Consensus        83 kc~~la~gG~~g~fd~~~~~tn~~--h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~  160 (344)
T KOG4532|consen   83 KCVTLADGGASGQFDLFACNTNDG--HLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLT  160 (344)
T ss_pred             cccEEEeccccceeeeecccCccc--ceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccc
Confidence            345899999999999999875432  22333344444432222122 234666788999999988665433333222234


Q ss_pred             eEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEe-eeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce----
Q 042434          312 VSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKA-WRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA----  386 (517)
Q Consensus       312 v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----  386 (517)
                      +.++++++|+++.++.+....|-.|..|-++..+.. ........-.+..|+.....++++..||++.|||++...    
T Consensus       161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~  240 (344)
T KOG4532|consen  161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA  240 (344)
T ss_pred             eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh
Confidence            789999999999999999888444444444444333 333444456778899999999999999999999998754    


Q ss_pred             ---EEeeccCCCeeEEEEcCCCC--EEEEEeCCCeEEEEEcCCC
Q 042434          387 ---ERVISEEHPITSLSVSVDCK--NFIVNLNSQEIHMWDVAGK  425 (517)
Q Consensus       387 ---~~~~~~~~~i~~~~~s~~~~--~l~~~~~d~~i~~~d~~~~  425 (517)
                         .....|.+.+..+.|++.|.  .|+..-.-+.+.+.|+++.
T Consensus       241 ~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~  284 (344)
T KOG4532|consen  241 EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNY  284 (344)
T ss_pred             hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccC
Confidence               23345778899999998654  3555555678999999876

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.03  E-value=6.9e-07  Score=76.96  Aligned_cols=226  Identities=15%  Similarity=0.065  Sum_probs=136.4

Q ss_pred             EEECCCCCeEEEEeCCCeEEEEECCCC--cEEEEeC---CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEe
Q 042434          273 VAWSPDDTKLLTCGNAEVLKLWDVETG--ICKHTFG---DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKA  347 (517)
Q Consensus       273 l~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~---~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~  347 (517)
                      ++.+.+|+.||.. .|..|-|=..++.  .++.+.+   .....-.-++|+||+..||.+...|+  |.++|..+..+..
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~--i~vfdl~g~~lf~   79 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGT--IRVFDLMGSELFV   79 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCe--EEEEecccceeEE
Confidence            4567788877764 5666666655432  2222222   23344567999999999999999999  7777888766655


Q ss_pred             eeCcC------CCceEEEEEccCC------CEEEEEeCCCcEEEEECCCc--e----EEe----eccCCCeeEEEEcCCC
Q 042434          348 WRGTR------IPKVLDLAVTPDG------ENLISVLSDKDIRILNLGTY--A----ERV----ISEEHPITSLSVSVDC  405 (517)
Q Consensus       348 ~~~~~------~~~i~~~~~~~~~------~~l~~~~~dg~i~i~d~~~~--~----~~~----~~~~~~i~~~~~s~~~  405 (517)
                      +....      ...|..+.|.+..      ..|++....|.++-|-+..+  +    ...    ......|.++.++|..
T Consensus        80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h  159 (282)
T PF15492_consen   80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH  159 (282)
T ss_pred             cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence            44322      2346666665432      25677778888877765321  1    111    1246689999999999


Q ss_pred             CEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCc------EEEEecCCCceeEEecC
Q 042434          406 KNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQ------IYIWNRRNSKPIEILSG  479 (517)
Q Consensus       406 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~------i~iwd~~~~~~~~~~~~  479 (517)
                      +.|++|+....      ..+     .-.....+....+.+..+|..+.+. ..+|+.      -.+|.+-+.+.......
T Consensus       160 ~LLlVgG~~~~------~~~-----~s~a~~~GLtaWRiL~~~Pyyk~v~-~~~~~~~~~~~~~~~~~~~~~~~fs~~~~  227 (282)
T PF15492_consen  160 RLLLVGGCEQN------QDG-----MSKASSCGLTAWRILSDSPYYKQVT-SSEDDITASSKRRGLLRIPSFKFFSRQGQ  227 (282)
T ss_pred             CEEEEeccCCC------CCc-----cccccccCceEEEEcCCCCcEEEcc-ccCccccccccccceeeccceeeeecccc
Confidence            99888875432      000     0111222233333433344433322 222221      23444333332222223


Q ss_pred             CCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCC
Q 042434          480 HSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQS  514 (517)
Q Consensus       480 h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~  514 (517)
                      ....|..|..+||| .+||+...+|.|.+|++.+-
T Consensus       228 ~~d~i~kmSlSPdg-~~La~ih~sG~lsLW~iPsL  261 (282)
T PF15492_consen  228 EQDGIFKMSLSPDG-SLLACIHFSGSLSLWEIPSL  261 (282)
T ss_pred             CCCceEEEEECCCC-CEEEEEEcCCeEEEEecCcc
Confidence            46789999999999 79999999999999998753

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.03  E-value=4.1e-08  Score=85.93  Aligned_cols=270  Identities=16%  Similarity=0.271  Sum_probs=167.0

Q ss_pred             cCcEEEEEECCCCC--EEEEeeCCCcEEEEEecCCCee--------------------------------eEEEE-eccC
Q 042434          222 KNEVWFVQFSNNGE--YLASSSSDCSAIIWKVLEDSKL--------------------------------TLKHT-LRSH  266 (517)
Q Consensus       222 ~~~v~~~~~s~~~~--~l~t~~~dg~i~iw~~~~~~~~--------------------------------~~~~~-~~~h  266 (517)
                      ...|..+.|.++++  .+...+.|.+|++|.+......                                .+.+. -.+|
T Consensus        84 eEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaH  163 (433)
T KOG1354|consen   84 EEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAH  163 (433)
T ss_pred             hhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccc
Confidence            35688889988654  5566678999999988532110                                01111 1357


Q ss_pred             CCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcE---EEEeCCC-----CCceEEEEEeCC-CCeEEEeeCCCceeEEE
Q 042434          267 QNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGIC---KHTFGDH-----GFIVSSCAWFPD-SKRLVCGSSDTEKGIFM  337 (517)
Q Consensus       267 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~-----~~~v~~i~~~~~-~~~l~~~~~d~~v~i~~  337 (517)
                      +--|.+++++.|...++++ .|=.|.+|+++--..   +..++++     ..-|++..|+|. .+.|+.++..|+  |.+
T Consensus       164 tyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGt--IrL  240 (433)
T KOG1354|consen  164 TYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGT--IRL  240 (433)
T ss_pred             eeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCc--EEE
Confidence            8889999999999988885 567899999864321   2223333     456889999995 568888899999  666


Q ss_pred             EeCCCC-----eeEeeeC-----------cCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce---EEeecc------
Q 042434          338 CDCDGN-----EIKAWRG-----------TRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA---ERVISE------  392 (517)
Q Consensus       338 ~~~~~~-----~~~~~~~-----------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~------  392 (517)
                      .|++..     ..+.+..           .-...|.++.|+++|+++++-+. -+|++||+....   ....-|      
T Consensus       241 cDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~k  319 (433)
T KOG1354|consen  241 CDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSK  319 (433)
T ss_pred             eechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHH
Confidence            666521     1111111           11235788999999999987433 579999995433   111111      


Q ss_pred             ------CC---CeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcE
Q 042434          393 ------EH---PITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQI  463 (517)
Q Consensus       393 ------~~---~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i  463 (517)
                            ..   .-..++|+.++.++++|+..+..++|++..+.....+......... ....   ..-+.+.+++.....
T Consensus       320 Lc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~-~~~~---~k~~~V~~~g~r~~~  395 (433)
T KOG1354|consen  320 LCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMK-PRKV---LKLRLVSSSGKRKRD  395 (433)
T ss_pred             HHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCc-cccc---ccceeeecCCCcccc
Confidence                  11   2346789999999999999999999997665444444433332210 1110   122345555544332


Q ss_pred             EEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEe
Q 042434          464 YIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW  509 (517)
Q Consensus       464 ~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw  509 (517)
                      .+|       +..+ .....+...+|+|.. +.+|.+...+ ++||
T Consensus       396 ~~~-------vd~l-df~kkilh~aWhp~e-n~ia~aatnn-lyif  431 (433)
T KOG1354|consen  396 EIS-------VDAL-DFRKKILHTAWHPKE-NSIAVAATNN-LYIF  431 (433)
T ss_pred             ccc-------cchh-hhhhHHHhhccCCcc-ceeeeeecCc-eEEe
Confidence            111       1111 123456677999998 6777666554 5554

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.01  E-value=7.5e-09  Score=93.61  Aligned_cols=251  Identities=14%  Similarity=0.138  Sum_probs=175.7

Q ss_pred             ccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeC-CCeEEEEECCCC
Q 042434          221 HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGN-AEVLKLWDVETG  299 (517)
Q Consensus       221 h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-dg~i~iwd~~~~  299 (517)
                      |.+.|+.+..+ -.+++.+++.||.++.|.-..-...+.+..+..|-..|.+++.+-++..+.|.+. |..++++|+++-
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~   86 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF   86 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence            78888877654 4469999999999999986543445667778889999999999999999999777 999999999876


Q ss_pred             cEEEEeCCCCCceEEEEEeC-CC--C-eEEEee-CCCceeEEEEeCCC--CeeEeeeCcCCCceEEEEEccCCCEEEEEe
Q 042434          300 ICKHTFGDHGFIVSSCAWFP-DS--K-RLVCGS-SDTEKGIFMCDCDG--NEIKAWRGTRIPKVLDLAVTPDGENLISVL  372 (517)
Q Consensus       300 ~~~~~~~~~~~~v~~i~~~~-~~--~-~l~~~~-~d~~v~i~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  372 (517)
                      ..+.-++-..- ...+.|.. .|  . .++++. .++.  +.++|..+  .+...+...+..+|..+.+++-+..+++..
T Consensus        87 DminmiKL~~l-Pg~a~wv~skGd~~s~IAVs~~~sg~--i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD  163 (558)
T KOG0882|consen   87 DMINMIKLVDL-PGFAEWVTSKGDKISLIAVSLFKSGK--IFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSID  163 (558)
T ss_pred             chhhhcccccC-CCceEEecCCCCeeeeEEeecccCCC--cEEECCcCCcCccceecccccCceEEEEeeccccceeecc
Confidence            65533321111 11222222 22  1 333333 3455  77777764  455666777778999999999999999999


Q ss_pred             CCCcEEEEECCC-ce----------------EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCc
Q 042434          373 SDKDIRILNLGT-YA----------------ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGH  435 (517)
Q Consensus       373 ~dg~i~i~d~~~-~~----------------~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~  435 (517)
                      ..|.|.-|.... .+                ...........++.|+|++..+.+-..|..|++++..++ ...+.+...
T Consensus       164 ~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtG-klvqeiDE~  242 (558)
T KOG0882|consen  164 ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTG-KLVQEIDEV  242 (558)
T ss_pred             ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccc-hhhhhhhcc
Confidence            999999998873 11                011223456789999999999999999999999998775 222211100


Q ss_pred             c------------------------------cCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEe
Q 042434          436 S------------------------------QNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEIL  477 (517)
Q Consensus       436 ~------------------------------~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  477 (517)
                      .                              ........+.|...|++|+-|+.=| |++.++.+++.++.+
T Consensus       243 ~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~  313 (558)
T KOG0882|consen  243 LTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRIL  313 (558)
T ss_pred             chhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence            0                              0111122233477899999888766 889999988877655

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.01  E-value=6.2e-09  Score=92.94  Aligned_cols=157  Identities=17%  Similarity=0.205  Sum_probs=113.4

Q ss_pred             eEEEEEccCCCEEEEEeCCCcEEEEECCCceE-----EeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-ccc
Q 042434          356 VLDLAVTPDGENLISVLSDKDIRILNLGTYAE-----RVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKW-EKP  429 (517)
Q Consensus       356 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~-~~~  429 (517)
                      ......++++++++++..+....+++......     .........+++.+..+.....++..-|.++-+|+-... ...
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~  144 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC  144 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence            34456778888999998888887877765432     222333445666666666777777666666666553321 233


Q ss_pred             eEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEec-CCCCCeeEEEecCCCCcEEEEeeCCCcEEE
Q 042434          430 FKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILS-GHSMTVNCVSWNPKRPKMLASASDDHTIRI  508 (517)
Q Consensus       430 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~l~s~~~dg~v~i  508 (517)
                      ...-||..-   +..+.++||+++|+++..|..|++-.....-.+..+. ||..-|..++.-++.  .|+|+|.|++|++
T Consensus       145 ~~~lGhvSm---l~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~--~LlS~sGD~tlr~  219 (390)
T KOG3914|consen  145 EPILGHVSM---LLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY--LLLSGSGDKTLRL  219 (390)
T ss_pred             chhhhhhhh---hheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc--eeeecCCCCcEEE
Confidence            334455443   5556679999999999999999998877666666654 799999999999876  5999999999999


Q ss_pred             eCCCCCCCC
Q 042434          509 WGPCQSSEV  517 (517)
Q Consensus       509 w~~~~~~~v  517 (517)
                      ||+.+|+.+
T Consensus       220 Wd~~sgk~L  228 (390)
T KOG3914|consen  220 WDITSGKLL  228 (390)
T ss_pred             EecccCCcc
Confidence            999999863

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.00  E-value=2.6e-07  Score=78.30  Aligned_cols=261  Identities=13%  Similarity=0.052  Sum_probs=158.4

Q ss_pred             CCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECC-----CCCeEEEEeCCCeEEEEECCCCcEE-EEeCCCCCceEEE
Q 042434          242 SDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP-----DDTKLLTCGNAEVLKLWDVETGICK-HTFGDHGFIVSSC  315 (517)
Q Consensus       242 ~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~-----~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~i  315 (517)
                      ....+-+|+..+..+ ..+...       +.+.|-|     ...+||.||..|...+|...+.+.. +....+...|+-+
T Consensus        50 ~t~sv~i~~~y~N~~-~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~  121 (344)
T KOG4532|consen   50 KTISVPINSHYSNPK-GIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLV  121 (344)
T ss_pred             ceeeeEeccccCCch-hhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhh
Confidence            344577777765431 111211       3344444     3468999999999999999865533 2333333333222


Q ss_pred             EEe-CCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-----EEe
Q 042434          316 AWF-PDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-----ERV  389 (517)
Q Consensus       316 ~~~-~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~  389 (517)
                      .=. .....+..++.|.++++...+.+..........  -...++.+++|++++++.+....|..|.+....     ...
T Consensus       122 ~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~--~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~  199 (344)
T KOG4532|consen  122 KRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQN--LTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYE  199 (344)
T ss_pred             hhhcccccceeeccCCcceeEEEEecCcccceeeccc--cceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEe
Confidence            111 122346677788885566555543322222111  137889999999999999999999999987654     122


Q ss_pred             eccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEe-CcccCceEEEeecCCCCCc--EEEEecCCCcEEEE
Q 042434          390 ISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYT-GHSQNKYVIRSCFGGLDGT--FIASGSENSQIYIW  466 (517)
Q Consensus       390 ~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~~~~~i~~~~~s~~~~--~l~~~~~dg~i~iw  466 (517)
                      ......-.+.+|+.....+++++.||.+.+||++....+..... ........++.|.|++.|.  +|+..-.=+.+.+.
T Consensus       200 a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~  279 (344)
T KOG4532|consen  200 APTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVV  279 (344)
T ss_pred             cccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEE
Confidence            33444567788999999999999999999999987533322211 1112334577777776553  34444344689999


Q ss_pred             ecCCCceeEEec-------CCC-CCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCC
Q 042434          467 NRRNSKPIEILS-------GHS-MTVNCVSWNPKRPKMLASASDDHTIRIWGPCQS  514 (517)
Q Consensus       467 d~~~~~~~~~~~-------~h~-~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~  514 (517)
                      |+++++....+.       .|. ..|..-.|+.++. -+.+.+.+ .+.=|++.+.
T Consensus       280 D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~-s~~v~~e~-~~ae~ni~sr  333 (344)
T KOG4532|consen  280 DTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENE-SNDVKNEL-QGAEYNILSR  333 (344)
T ss_pred             EcccCceeeEEecCccccccccccccccccccCCCc-ccccccch-hhheeecccc
Confidence            999987554432       232 3477888888774 34344433 2444555443

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.99  E-value=1.1e-08  Score=91.49  Aligned_cols=159  Identities=17%  Similarity=0.223  Sum_probs=111.6

Q ss_pred             cEEEEEECCCCCEEEEeeCCCcEEEEEecCCCe-eeEEEEeccCCCCEEEEEECCCCCeEEEE---eCCCeEEEEECCCC
Q 042434          224 EVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSK-LTLKHTLRSHQNPVSFVAWSPDDTKLLTC---GNAEVLKLWDVETG  299 (517)
Q Consensus       224 ~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~-~~~~~~~~~h~~~v~~l~~s~~~~~l~s~---~~dg~i~iwd~~~~  299 (517)
                      .+..+..+|++++||.+..+....++++....+ .+...... -...-+++.|..+......+   +....+.+|....+
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~  142 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG  142 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence            444566778888888888887777777764443 22332222 22333445555555444443   44556777777666


Q ss_pred             cEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEE
Q 042434          300 ICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRI  379 (517)
Q Consensus       300 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  379 (517)
                      .+...+ +|-..++.++|+||+++|+++..|+.|+|..+. ....+..+..+|...|..++.-++. .|++++.|+++++
T Consensus       143 ~~~~~l-GhvSml~dVavS~D~~~IitaDRDEkIRvs~yp-a~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~  219 (390)
T KOG3914|consen  143 RCEPIL-GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYP-ATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRL  219 (390)
T ss_pred             Ccchhh-hhhhhhheeeecCCCCEEEEecCCceEEEEecC-cccchhhhccccHhheeeeeeccCc-eeeecCCCCcEEE
Confidence            655555 899999999999999999999999995554332 3455666777677789999887654 5899999999999


Q ss_pred             EECCCce
Q 042434          380 LNLGTYA  386 (517)
Q Consensus       380 ~d~~~~~  386 (517)
                      ||+.+++
T Consensus       220 Wd~~sgk  226 (390)
T KOG3914|consen  220 WDITSGK  226 (390)
T ss_pred             EecccCC
Confidence            9999887

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.93  E-value=5.1e-09  Score=91.51  Aligned_cols=153  Identities=11%  Similarity=0.230  Sum_probs=121.3

Q ss_pred             EEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce------EEeeccCCCeeEEEEcC-CCCE
Q 042434          335 IFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA------ERVISEEHPITSLSVSV-DCKN  407 (517)
Q Consensus       335 i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~i~~~~~s~-~~~~  407 (517)
                      +.+.+..+.....+.  ..+.|.++.|...++.+..|..+|.|..+|++.+.      ...+.|...++++..-. ++.+
T Consensus       236 v~L~nvetg~~qsf~--sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~  313 (425)
T KOG2695|consen  236 VLLTNVETGHQQSFQ--SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQK  313 (425)
T ss_pred             eEEEEeecccccccc--cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccce
Confidence            777777766655555  23478889999999999999999999999998762      66778899999998877 8889


Q ss_pred             EEEEeCCCeEEEEEcCCC--CccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCC----
Q 042434          408 FIVNLNSQEIHMWDVAGK--WEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHS----  481 (517)
Q Consensus       408 l~~~~~d~~i~~~d~~~~--~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~----  481 (517)
                      +++.+.+|.|.+||++..  ...+..+.||......+.... .+....+++++.|...+||.++.|.++.+++...    
T Consensus       314 LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v-~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e  392 (425)
T KOG2695|consen  314 LMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHV-KEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASE  392 (425)
T ss_pred             EeeccCcCceeEeeehhhhcccceeeeeccccccccccccc-ccccceEEEccCeeEEEEEecccCceeeccCCCCcccc
Confidence            999999999999999764  123788899987655444433 6777889999999999999999999999887433    


Q ss_pred             CCeeEEEec
Q 042434          482 MTVNCVSWN  490 (517)
Q Consensus       482 ~~v~~v~~~  490 (517)
                      ..+.+++|.
T Consensus       393 ~d~~sv~~~  401 (425)
T KOG2695|consen  393 VDIPSVAFD  401 (425)
T ss_pred             ccccceehh
Confidence            345566664

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.91  E-value=1.2e-06  Score=84.89  Aligned_cols=259  Identities=11%  Similarity=0.064  Sum_probs=148.4

Q ss_pred             CCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEE-EEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCc
Q 042434          233 NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSF-VAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFI  311 (517)
Q Consensus       233 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~-l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  311 (517)
                      ++..++.++.+|.+..+|..+++..   ...... +.+.+ ...  .+..++.++.+|.+..+|..+|+.+..+......
T Consensus       119 ~~~~v~v~~~~g~l~ald~~tG~~~---W~~~~~-~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~  192 (394)
T PRK11138        119 AGGKVYIGSEKGQVYALNAEDGEVA---WQTKVA-GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPS  192 (394)
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCCc---ccccCC-CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCc
Confidence            3456777888999999998777432   222211 12211 111  2456777888999999999999988777532111


Q ss_pred             eEE-EEEeC--CCCeEEEeeCCCceeEEEEeCCCCee-EeeeCcCC---C---ceEEEEEcc--CCCEEEEEeCCCcEEE
Q 042434          312 VSS-CAWFP--DSKRLVCGSSDTEKGIFMCDCDGNEI-KAWRGTRI---P---KVLDLAVTP--DGENLISVLSDKDIRI  379 (517)
Q Consensus       312 v~~-i~~~~--~~~~l~~~~~d~~v~i~~~~~~~~~~-~~~~~~~~---~---~i~~~~~~~--~~~~l~~~~~dg~i~i  379 (517)
                      +.. ..-+|  .+..++.++.+|.  ++-++..+... -.......   .   ....+..+|  .+..+++++.+|.+..
T Consensus       193 ~~~~~~~sP~v~~~~v~~~~~~g~--v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~a  270 (394)
T PRK11138        193 LTLRGESAPATAFGGAIVGGDNGR--VSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVA  270 (394)
T ss_pred             ccccCCCCCEEECCEEEEEcCCCE--EEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEE
Confidence            000 00011  1335666777777  66666553322 11110000   0   001111122  3456777888999999


Q ss_pred             EECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCC--CCcEEEEe
Q 042434          380 LNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGL--DGTFIASG  457 (517)
Q Consensus       380 ~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~  457 (517)
                      +|..+++............+  ...+..+++++.+|.+..+|..++ .............  ..    +|  .+.+|+.+
T Consensus       271 ld~~tG~~~W~~~~~~~~~~--~~~~~~vy~~~~~g~l~ald~~tG-~~~W~~~~~~~~~--~~----sp~v~~g~l~v~  341 (394)
T PRK11138        271 LDLRSGQIVWKREYGSVNDF--AVDGGRIYLVDQNDRVYALDTRGG-VELWSQSDLLHRL--LT----APVLYNGYLVVG  341 (394)
T ss_pred             EECCCCCEEEeecCCCccCc--EEECCEEEEEcCCCeEEEEECCCC-cEEEcccccCCCc--cc----CCEEECCEEEEE
Confidence            99998873322211111112  224667888889999999999776 3222211111100  00    11  25577888


Q ss_pred             cCCCcEEEEecCCCceeEEecCCCCCee-EEEecCCCCcEEEEeeCCCcEEEeCC
Q 042434          458 SENSQIYIWNRRNSKPIEILSGHSMTVN-CVSWNPKRPKMLASASDDHTIRIWGP  511 (517)
Q Consensus       458 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~-~v~~~~~~~~~l~s~~~dg~v~iw~~  511 (517)
                      +.||.|++.|..+|+.+.........+. ...+. ++  .|+.++.||.|+.++.
T Consensus       342 ~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~-~~--~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        342 DSEGYLHWINREDGRFVAQQKVDSSGFLSEPVVA-DD--KLLIQARDGTVYAITR  393 (394)
T ss_pred             eCCCEEEEEECCCCCEEEEEEcCCCcceeCCEEE-CC--EEEEEeCCceEEEEeC
Confidence            9999999999999998887764333333 22232 33  6788899999988764

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.90  E-value=1.8e-07  Score=83.70  Aligned_cols=246  Identities=16%  Similarity=0.151  Sum_probs=145.9

Q ss_pred             EEeccCCCCEEEEEECCCCC-eEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCC-CeEEEeeCCCceeEEEE
Q 042434          261 HTLRSHQNPVSFVAWSPDDT-KLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDS-KRLVCGSSDTEKGIFMC  338 (517)
Q Consensus       261 ~~~~~h~~~v~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~d~~v~i~~~  338 (517)
                      ..+.+|...|..++|+|..+ ++..++.+..|+|.|+++..++..+..+ ..+++++|.-|. ++|.+|..+|.  |+++
T Consensus       187 q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~--Vlvy  263 (463)
T KOG1645|consen  187 QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGM--VLVY  263 (463)
T ss_pred             hcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCce--EEEE
Confidence            45667888999999999877 7888999999999999999998888777 889999998865 46777778888  8888


Q ss_pred             eCCCC--eeEeeeC-cCCCceEEEEEcc------CCCEEEEEeCCCcEEEEECCCce-----EEeeccCCCeeEEEEcCC
Q 042434          339 DCDGN--EIKAWRG-TRIPKVLDLAVTP------DGENLISVLSDKDIRILNLGTYA-----ERVISEEHPITSLSVSVD  404 (517)
Q Consensus       339 ~~~~~--~~~~~~~-~~~~~i~~~~~~~------~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~i~~~~~s~~  404 (517)
                      |.+..  .+..+.. ....+|..++.-+      .|..++....+  +..|......     .......+...++...+.
T Consensus       264 D~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~  341 (463)
T KOG1645|consen  264 DMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGV  341 (463)
T ss_pred             EccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCc
Confidence            88742  2222222 1222444443332      33344433332  3445443222     122333455666666666


Q ss_pred             CCEEEEEeCCC----e---EEE-EEcCCCCccceEEeCc---cc-CceEEEeecCCCCCcEEEE-ecCCCcEEEEecCCC
Q 042434          405 CKNFIVNLNSQ----E---IHM-WDVAGKWEKPFKYTGH---SQ-NKYVIRSCFGGLDGTFIAS-GSENSQIYIWNRRNS  471 (517)
Q Consensus       405 ~~~l~~~~~d~----~---i~~-~d~~~~~~~~~~~~~~---~~-~~~~i~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~  471 (517)
                      .+.+++....+    .   +-. .|-.++......-.++   .. ....-....-.++.++++. |...+.+.+||..++
T Consensus       342 snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~  421 (463)
T KOG1645|consen  342 SNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSF  421 (463)
T ss_pred             cceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchh
Confidence            66666655431    0   111 1111111111111111   10 0000111222455566554 455578999999999


Q ss_pred             ceeEEecCCCCCeeEEEecCC-CCcEEEEeeCCCcEEEeCCCC
Q 042434          472 KPIEILSGHSMTVNCVSWNPK-RPKMLASASDDHTIRIWGPCQ  513 (517)
Q Consensus       472 ~~~~~~~~h~~~v~~v~~~~~-~~~~l~s~~~dg~v~iw~~~~  513 (517)
                      +.+.++.- +.+|.+++.... ++.+|++-. |..++||..++
T Consensus       422 evvQ~l~~-~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~es  462 (463)
T KOG1645|consen  422 EVVQTLAL-SEPVLDICPNDTNGSSYLALLT-DDRVHIYKNES  462 (463)
T ss_pred             heeeeccc-CcceeecceeecCCcchhhhee-cceEEEEecCC
Confidence            99999974 588888887653 434565554 55688887654

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.89  E-value=8.9e-09  Score=98.69  Aligned_cols=201  Identities=18%  Similarity=0.289  Sum_probs=145.6

Q ss_pred             CCceEEEEEeCCCCeEEEeeCCCceeEEEEeCC--CCeeEeeeCcCCCceEEEEEccCCC--EEEEEeCCCcEEEEECCC
Q 042434          309 GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD--GNEIKAWRGTRIPKVLDLAVTPDGE--NLISVLSDKDIRILNLGT  384 (517)
Q Consensus       309 ~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~i~d~~~  384 (517)
                      ..++.++..+|.|+-++.++.-|   +++.|+.  ..+.+-+.....-.+-...|+|...  +-++......-.+|++..
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~g---l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~  100 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQG---LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAK  100 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcC---eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhc
Confidence            45677888999999999999988   5666654  3333333333333567788887543  556666667777898865


Q ss_pred             ce-----EEeeccCCCeeEEEEcCCC-CEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEec
Q 042434          385 YA-----ERVISEEHPITSLSVSVDC-KNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGS  458 (517)
Q Consensus       385 ~~-----~~~~~~~~~i~~~~~s~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  458 (517)
                      ..     ....+|...++.+.|.|.. ..+++++.|..+..||++........+..-......+.+-+  .++. +.+.+
T Consensus       101 ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwny--k~p~-vlass  177 (1081)
T KOG0309|consen  101 SSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNY--KDPN-VLASS  177 (1081)
T ss_pred             CCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecc--cCcc-hhhhc
Confidence            43     3444677789999999964 56788899999999999987666666555444444444433  2344 44455


Q ss_pred             CCCcEEEEecCCC-ceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434          459 ENSQIYIWNRRNS-KPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS  515 (517)
Q Consensus       459 ~dg~i~iwd~~~~-~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~  515 (517)
                      ....|++||.+.| .++..+++|...|+.++|+......+.+++.||+|+.|+.....
T Consensus       178 hg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt  235 (1081)
T KOG0309|consen  178 HGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKST  235 (1081)
T ss_pred             cCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccc
Confidence            6678999998876 68899999999999999987654578999999999999987654

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.89  E-value=5.9e-06  Score=74.34  Aligned_cols=217  Identities=17%  Similarity=0.118  Sum_probs=135.6

Q ss_pred             EEEECC-CCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEEC-CCCCeEEEEeCCCeEEEEECCCCcEEEE
Q 042434          227 FVQFSN-NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWS-PDDTKLLTCGNAEVLKLWDVETGICKHT  304 (517)
Q Consensus       227 ~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s-~~~~~l~s~~~dg~i~iwd~~~~~~~~~  304 (517)
                      ++.|.+ ++.++++--..+.|..|+..++..  ..  +.. .. ...+++. +++. ++.+...+ +.++|..+++....
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~--~~--~~~-~~-~~G~~~~~~~g~-l~v~~~~~-~~~~d~~~g~~~~~   75 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV--EV--IDL-PG-PNGMAFDRPDGR-LYVADSGG-IAVVDPDTGKVTVL   75 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEE--EE--EES-SS-EEEEEEECTTSE-EEEEETTC-EEEEETTTTEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeE--EE--Eec-CC-CceEEEEccCCE-EEEEEcCc-eEEEecCCCcEEEE
Confidence            567888 777777777789999999865422  11  221 22 6677777 6654 55545544 55569998865443


Q ss_pred             eCC-----CCCceEEEEEeCCCCeEEEeeCCCc------eeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEE-EEe
Q 042434          305 FGD-----HGFIVSSCAWFPDSKRLVCGSSDTE------KGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLI-SVL  372 (517)
Q Consensus       305 ~~~-----~~~~v~~i~~~~~~~~l~~~~~d~~------v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~  372 (517)
                      ...     .......+++.|+|+..++......      -.++.++..+.........  .....++|+|+++.|+ +-+
T Consensus        76 ~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~--~~pNGi~~s~dg~~lyv~ds  153 (246)
T PF08450_consen   76 ADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVADGL--GFPNGIAFSPDGKTLYVADS  153 (246)
T ss_dssp             EEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEEEE--SSEEEEEEETTSSEEEEEET
T ss_pred             eeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeEEEEecCc--ccccceEECCcchheeeccc
Confidence            332     4567888999999997777654421      2389999884433333332  3678999999999776 556


Q ss_pred             CCCcEEEEECCC--ce----EEeec-cC--CCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEE
Q 042434          373 SDKDIRILNLGT--YA----ERVIS-EE--HPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIR  443 (517)
Q Consensus       373 ~dg~i~i~d~~~--~~----~~~~~-~~--~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~  443 (517)
                      ..+.|..|++..  ..    ..... ..  .....+++..+|+..++....+.|.++|..+  .....+.....  ....
T Consensus       154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G--~~~~~i~~p~~--~~t~  229 (246)
T PF08450_consen  154 FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDG--KLLREIELPVP--RPTN  229 (246)
T ss_dssp             TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTS--CEEEEEE-SSS--SEEE
T ss_pred             ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCc--cEEEEEcCCCC--CEEE
Confidence            678899999853  21    11211 12  2378899999999888888899999999874  33343332212  2233


Q ss_pred             eecCCCCCcEEEEe
Q 042434          444 SCFGGLDGTFIASG  457 (517)
Q Consensus       444 ~~~~s~~~~~l~~~  457 (517)
                      +++..++.+.|+..
T Consensus       230 ~~fgg~~~~~L~vT  243 (246)
T PF08450_consen  230 CAFGGPDGKTLYVT  243 (246)
T ss_dssp             EEEESTTSSEEEEE
T ss_pred             EEEECCCCCEEEEE
Confidence            44435665555443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.86  E-value=7.6e-09  Score=62.85  Aligned_cols=38  Identities=29%  Similarity=0.568  Sum_probs=36.4

Q ss_pred             ccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEE
Q 042434          213 ETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWK  250 (517)
Q Consensus       213 ~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~  250 (517)
                      +++.++.+|.+.|++++|+|++.+|++|+.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            57889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.86  E-value=1.9e-06  Score=87.94  Aligned_cols=239  Identities=16%  Similarity=0.162  Sum_probs=152.4

Q ss_pred             CCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCC---C-
Q 042434          267 QNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD---G-  342 (517)
Q Consensus       267 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~---~-  342 (517)
                      .+.|.++.|..+.+.++.+..+|.|.+-|.++.... ....-...|.+++|+||+..++..+..+++-+...+..   . 
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~  146 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK  146 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence            468999999999999999999999999988776432 33345788999999999999999998887433222110   0 


Q ss_pred             ------------------CeeEeeeCcC--------------------CCceEEEEEccCCCEEEEE-----eCCCcEEE
Q 042434          343 ------------------NEIKAWRGTR--------------------IPKVLDLAVTPDGENLISV-----LSDKDIRI  379 (517)
Q Consensus       343 ------------------~~~~~~~~~~--------------------~~~i~~~~~~~~~~~l~~~-----~~dg~i~i  379 (517)
                                        .....+.+..                    .+.=+++.|-.||.++++.     .....|++
T Consensus       147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV  226 (1265)
T KOG1920|consen  147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV  226 (1265)
T ss_pred             ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence                              1111111100                    0122358999999999873     23378999


Q ss_pred             EECCCce--EEeeccCCCeeEEEEcCCCCEEEEEe---CCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEE
Q 042434          380 LNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNL---NSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFI  454 (517)
Q Consensus       380 ~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~---~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  454 (517)
                      ||-. +.  .........-.+++|-|.|..+++..   .++.|.+|.-++.......+.-... ...+..+.|+.++..|
T Consensus       227 ~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~d-e~~ve~L~Wns~sdiL  304 (1265)
T KOG1920|consen  227 YDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLD-EKEVEELAWNSNSDIL  304 (1265)
T ss_pred             eccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCccc-ccchheeeecCCCCce
Confidence            9987 33  23333444567899999999988764   4567999987553222222221111 1115566678889888


Q ss_pred             EE---ecCCCcEEEEecCCCc--eeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeC
Q 042434          455 AS---GSENSQIYIWNRRNSK--PIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWG  510 (517)
Q Consensus       455 ~~---~~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~  510 (517)
                      ++   ......|++|-+.+..  +...+.-.....  +.|+|..+..+..-..+|...+++
T Consensus       305 Av~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~  363 (1265)
T KOG1920|consen  305 AVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRD  363 (1265)
T ss_pred             eeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEE
Confidence            87   4555569999887653  222333222222  778886655555555666555544

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.85  E-value=1.4e-06  Score=78.07  Aligned_cols=216  Identities=15%  Similarity=0.050  Sum_probs=131.3

Q ss_pred             CCeEEEEECCCCcEEEEeCCC--CCceEEEEEeCCCCeEEEeeCCCceeEEEEeCC-CCeeEeeeCcCCCceEEEEEccC
Q 042434          288 AEVLKLWDVETGICKHTFGDH--GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD-GNEIKAWRGTRIPKVLDLAVTPD  364 (517)
Q Consensus       288 dg~i~iwd~~~~~~~~~~~~~--~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~  364 (517)
                      +|+|..||..+|+.+......  .....+. ..+++..+++++.++.  ++.+|.. ++.+-......  .+.... ...
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~--l~~~d~~tG~~~W~~~~~~--~~~~~~-~~~   75 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGN--LYALDAKTGKVLWRFDLPG--PISGAP-VVD   75 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSE--EEEEETTTSEEEEEEECSS--CGGSGE-EEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCE--EEEEECCCCCEEEEeeccc--ccccee-eec
Confidence            689999999999998877431  1122211 3335677888788888  9999985 44444443322  111111 234


Q ss_pred             CCEEEEEeCCCcEEEEECCCceEEee--ccC----CCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccC
Q 042434          365 GENLISVLSDKDIRILNLGTYAERVI--SEE----HPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQN  438 (517)
Q Consensus       365 ~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~----~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~  438 (517)
                      +..+++++.++.++.+|..+++....  ...    ...........+..++++..++.|..+|+.++ ............
T Consensus        76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG-~~~w~~~~~~~~  154 (238)
T PF13360_consen   76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTG-KLLWKYPVGEPR  154 (238)
T ss_dssp             TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTT-EEEEEEESSTT-
T ss_pred             ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCC-cEEEEeecCCCC
Confidence            55677777888999999988883222  111    11222333334788999999999999999887 555555443321


Q ss_pred             -ceE-------EEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeC
Q 042434          439 -KYV-------IRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWG  510 (517)
Q Consensus       439 -~~~-------i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~  510 (517)
                       ...       ..... ..++ .++.++.+|.+..+|+.+++.+....  ...+..+ ..+++ ..++.++.++.|..||
T Consensus       155 ~~~~~~~~~~~~~~~~-~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~-~~~~~-~~l~~~~~~~~l~~~d  228 (238)
T PF13360_consen  155 GSSPISSFSDINGSPV-ISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSL-PSVDG-GTLYVTSSDGRLYALD  228 (238)
T ss_dssp             SS--EEEETTEEEEEE-CCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECEC-EECCC-TEEEEEETTTEEEEEE
T ss_pred             CCcceeeecccccceE-EECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccCC-ceeeC-CEEEEEeCCCEEEEEE
Confidence             111       11111 1244 67777777764444999999665333  2333332 23445 4677777999999999


Q ss_pred             CCCCCC
Q 042434          511 PCQSSE  516 (517)
Q Consensus       511 ~~~~~~  516 (517)
                      +.+|+.
T Consensus       229 ~~tG~~  234 (238)
T PF13360_consen  229 LKTGKV  234 (238)
T ss_dssp             TTTTEE
T ss_pred             CCCCCE
Confidence            999874

...

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.85  E-value=3e-06  Score=82.05  Aligned_cols=267  Identities=9%  Similarity=-0.032  Sum_probs=149.4

Q ss_pred             CCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEE-----EEEECC--CCCeEEEEeCCCeEEEEECCCCcEEEEe
Q 042434          233 NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVS-----FVAWSP--DDTKLLTCGNAEVLKLWDVETGICKHTF  305 (517)
Q Consensus       233 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~-----~l~~s~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~  305 (517)
                      .+..+++++.+|.+.-+|..+++.. -...+........     .+.-.|  ++..++.++.+|.+..+|.++|+.+.+.
T Consensus        68 ~~~~vy~~~~~g~l~ald~~tG~~~-W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~  146 (394)
T PRK11138         68 AYNKVYAADRAGLVKALDADTGKEI-WSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQT  146 (394)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEe-eEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence            3456777777788888887766432 1111211000000     000011  3567778889999999999999988776


Q ss_pred             CCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCe-eEeeeCcCCCceE-EEEEcc--CCCEEEEEeCCCcEEEEE
Q 042434          306 GDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNE-IKAWRGTRIPKVL-DLAVTP--DGENLISVLSDKDIRILN  381 (517)
Q Consensus       306 ~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~-~~~~~~~~~~~i~-~~~~~~--~~~~l~~~~~dg~i~i~d  381 (517)
                      ........+...  .+..+++++.++.  ++-+|..+.. +-....... ... ...-+|  .+..++.++.+|.+..+|
T Consensus       147 ~~~~~~~ssP~v--~~~~v~v~~~~g~--l~ald~~tG~~~W~~~~~~~-~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d  221 (394)
T PRK11138        147 KVAGEALSRPVV--SDGLVLVHTSNGM--LQALNESDGAVKWTVNLDVP-SLTLRGESAPATAFGGAIVGGDNGRVSAVL  221 (394)
T ss_pred             cCCCceecCCEE--ECCEEEEECCCCE--EEEEEccCCCEeeeecCCCC-cccccCCCCCEEECCEEEEEcCCCEEEEEE
Confidence            543321111122  2446667777777  8888876433 323222110 000 000011  134577788899999999


Q ss_pred             CCCceE-EeeccCCC--------eeEEEEcC--CCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCC
Q 042434          382 LGTYAE-RVISEEHP--------ITSLSVSV--DCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLD  450 (517)
Q Consensus       382 ~~~~~~-~~~~~~~~--------i~~~~~s~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  450 (517)
                      ..+++. .......+        ...+..+|  .+..+++++.+|.+..+|..++ ............    ..   -..
T Consensus       222 ~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG-~~~W~~~~~~~~----~~---~~~  293 (394)
T PRK11138        222 MEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSG-QIVWKREYGSVN----DF---AVD  293 (394)
T ss_pred             ccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCC-CEEEeecCCCcc----Cc---EEE
Confidence            888762 11111000        01111222  3566777888999999999876 333222111000    00   124


Q ss_pred             CcEEEEecCCCcEEEEecCCCceeEEecCCC-CCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434          451 GTFIASGSENSQIYIWNRRNSKPIEILSGHS-MTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSE  516 (517)
Q Consensus       451 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~  516 (517)
                      +..++.++.+|.++.+|..+|+.+.....-. ....+.... ++  .++.++.||.|.+.|..+|+.
T Consensus       294 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~-~g--~l~v~~~~G~l~~ld~~tG~~  357 (394)
T PRK11138        294 GGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY-NG--YLVVGDSEGYLHWINREDGRF  357 (394)
T ss_pred             CCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE-CC--EEEEEeCCCEEEEEECCCCCE
Confidence            5677888899999999999998765443211 112222222 33  677889999999999988763

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.84  E-value=1.2e-05  Score=68.36  Aligned_cols=264  Identities=13%  Similarity=0.104  Sum_probs=139.9

Q ss_pred             CCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCce
Q 042434          233 NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIV  312 (517)
Q Consensus       233 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v  312 (517)
                      -|++++.|+..|.+++.+..++.........   ..--......+++..+..|+.|++....|..+..++...+......
T Consensus        62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~---~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f  138 (354)
T KOG4649|consen   62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL---ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTF  138 (354)
T ss_pred             ECCEEEEEEccCcEEEEEecchhheeeeeeh---hhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCcee
Confidence            3678999999999999999888554322222   1111223456789999999999999999999999998876665555


Q ss_pred             EEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeE-eeeCcCCCceEE--EEEccCCCEEEEEeCCCcEEEEECCCceEEe
Q 042434          313 SSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIK-AWRGTRIPKVLD--LAVTPDGENLISVLSDKDIRILNLGTYAERV  389 (517)
Q Consensus       313 ~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~-~~~~~~~~~i~~--~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  389 (517)
                      .+-+..|-...|+.+...|.  +........... .+.....+++.+  ++   -+..+..+.-||.+.-+|-...+...
T Consensus       139 ~sP~i~~g~~sly~a~t~G~--vlavt~~~~~~~~~w~~~~~~PiF~splc---v~~sv~i~~VdG~l~~f~~sG~qvwr  213 (354)
T KOG4649|consen  139 VSPVIAPGDGSLYAAITAGA--VLAVTKNPYSSTEFWAATRFGPIFASPLC---VGSSVIITTVDGVLTSFDESGRQVWR  213 (354)
T ss_pred             ccceecCCCceEEEEeccce--EEEEccCCCCcceehhhhcCCccccCcee---ccceEEEEEeccEEEEEcCCCcEEEe
Confidence            55666674445555555665  444443332211 111111112211  11   13345555566666666633322333


Q ss_pred             eccCCCeeE-EEEc-CCCCEEEEEeCCC--------eEEEEEcCCCCccceEEeCcccCceEEEeecCCC---CCcEEEE
Q 042434          390 ISEEHPITS-LSVS-VDCKNFIVNLNSQ--------EIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGL---DGTFIAS  456 (517)
Q Consensus       390 ~~~~~~i~~-~~~s-~~~~~l~~~~~d~--------~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~~  456 (517)
                      ....++|.. -+-+ |..+.+..+..+-        .-.+|..+.+ .....+....     ++....++   ..+++..
T Consensus       214 ~~t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g-~t~~vy~~p~-----l~F~~h~~~~S~~~ll~~  287 (354)
T KOG4649|consen  214 PATKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSG-TTLHVYLSPK-----LRFDLHSPGISYPKLLRR  287 (354)
T ss_pred             ecCCCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCC-cEEEEEeCcc-----cceeccCCCCcchhhhhh
Confidence            333333211 1111 3323333332222        2234444333 1111111100     11111122   2457888


Q ss_pred             ecCCCcEEEEecCCCceeEEecCCCCCeeEEE--------e-cC---CCCcEEEEeeCCCcEEEeCCCCC
Q 042434          457 GSENSQIYIWNRRNSKPIEILSGHSMTVNCVS--------W-NP---KRPKMLASASDDHTIRIWGPCQS  514 (517)
Q Consensus       457 ~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~--------~-~~---~~~~~l~s~~~dg~v~iw~~~~~  514 (517)
                      ++.||++.|.-.+  +.+.....|.+.+..+.        | +|   +|  .|+.|+.|..|+.||+.+.
T Consensus       288 ~s~dgkv~il~~~--~sl~~~~s~~g~lq~~~~~el~~eIFsSPvii~g--rl~igcRDdYv~cldl~~~  353 (354)
T KOG4649|consen  288 SSGDGKVMILMTS--KSLAEISSNGGELQNLEAIELSNEIFSSPVIIDG--RLLIGCRDDYVRCLDLDTW  353 (354)
T ss_pred             hcCCCcEEEEEec--ccccccccCCCccceEEEeecCcccccCCeEEcc--EEEEEEccCeEEEEecccc
Confidence            8899988887443  22444444444333332        2 12   34  5778889999999999864

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.82  E-value=3.2e-06  Score=80.28  Aligned_cols=263  Identities=17%  Similarity=0.173  Sum_probs=144.5

Q ss_pred             CCCCCEEEEe---------eCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcE
Q 042434          231 SNNGEYLASS---------SSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGIC  301 (517)
Q Consensus       231 s~~~~~l~t~---------~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~  301 (517)
                      |||+++++..         +..+.+.|||+.++..    ..+......+....|||+|+.++... ++.|.+++..++..
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~----~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~   75 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEI----TPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE   75 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEE----EESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCce----EECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCe
Confidence            6888888774         2346788999976522    22222256789999999999999875 57899999888755


Q ss_pred             EEEeC-CC----------------CCceEEEEEeCCCCeEEEeeCCC---------------------------------
Q 042434          302 KHTFG-DH----------------GFIVSSCAWFPDSKRLVCGSSDT---------------------------------  331 (517)
Q Consensus       302 ~~~~~-~~----------------~~~v~~i~~~~~~~~l~~~~~d~---------------------------------  331 (517)
                      .+.-. +.                -..-..+-|+||+++|+....|.                                 
T Consensus        76 ~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~n  155 (353)
T PF00930_consen   76 TQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPN  155 (353)
T ss_dssp             EESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS--
T ss_pred             EEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcC
Confidence            43221 20                11235688999999988754332                                 


Q ss_pred             -ceeEEEEeCCCCeeEeee-----CcCCCceEEEEEccCCCEEEEEe--CCC---cEEEEECCCceE---EeeccCCC--
Q 042434          332 -EKGIFMCDCDGNEIKAWR-----GTRIPKVLDLAVTPDGENLISVL--SDK---DIRILNLGTYAE---RVISEEHP--  395 (517)
Q Consensus       332 -~v~i~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~--~dg---~i~i~d~~~~~~---~~~~~~~~--  395 (517)
                       .+.+++++..+.....+.     ......+..+.|.++++.++..-  .+.   .+.++|..++..   ........  
T Consensus       156 p~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~  235 (353)
T PF00930_consen  156 PRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVD  235 (353)
T ss_dssp             -EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSS
T ss_pred             CceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCccee
Confidence             123445555443332111     11233577889999988444433  332   466778766551   11112222  


Q ss_pred             -eeEEEEc-CCCCE-EEEEeCCCe--EEEEEcCCCCccceEEeCcccCceEE-EeecCCCCCcEE-EEecCC----CcEE
Q 042434          396 -ITSLSVS-VDCKN-FIVNLNSQE--IHMWDVAGKWEKPFKYTGHSQNKYVI-RSCFGGLDGTFI-ASGSEN----SQIY  464 (517)
Q Consensus       396 -i~~~~~s-~~~~~-l~~~~~d~~--i~~~d~~~~~~~~~~~~~~~~~~~~i-~~~~~s~~~~~l-~~~~~d----g~i~  464 (517)
                       .....+. +++.. +.....+|.  |.+++..++  ....+...   .+.+ ....++++++.| +++..+    ..|+
T Consensus       236 ~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~--~~~~lT~G---~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY  310 (353)
T PF00930_consen  236 VYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGG--KPRQLTSG---DWEVTSILGWDEDNNRIYFTANGDNPGERHLY  310 (353)
T ss_dssp             SSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSS--EEEESS-S---SS-EEEEEEEECTSSEEEEEESSGGTTSBEEE
T ss_pred             eecccccccCCCCEEEEEEEcCCCcEEEEEccccc--ceeccccC---ceeecccceEcCCCCEEEEEecCCCCCceEEE
Confidence             2345554 55554 444556674  555555544  22232221   2222 334445665544 455543    3566


Q ss_pred             EEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCC
Q 042434          465 IWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDD  503 (517)
Q Consensus       465 iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~d  503 (517)
                      .-++..+..+..+....+....+.|+|++..++.+++.-
T Consensus       311 ~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s~~  349 (353)
T PF00930_consen  311 RVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTYSGP  349 (353)
T ss_dssp             EEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEEESS
T ss_pred             EEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEEcCC
Confidence            667773344555554443336999999997666666654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.80  E-value=1.3e-08  Score=61.75  Aligned_cols=39  Identities=41%  Similarity=0.851  Sum_probs=36.6

Q ss_pred             CceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeC
Q 042434          471 SKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWG  510 (517)
Q Consensus       471 ~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~  510 (517)
                      |+++.++.+|.+.|++++|+|++ .+|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDG-NFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence            46788999999999999999998 7999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.77  E-value=1e-07  Score=80.25  Aligned_cols=148  Identities=14%  Similarity=0.241  Sum_probs=94.1

Q ss_pred             ccCCCEEEEEeCCCcEEEEECCCceE---EeeccCCCeeEEEEcCCCCEEEEEe-----CCCeEEEEEcCCCCccceEEe
Q 042434          362 TPDGENLISVLSDKDIRILNLGTYAE---RVISEEHPITSLSVSVDCKNFIVNL-----NSQEIHMWDVAGKWEKPFKYT  433 (517)
Q Consensus       362 ~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~i~~~~~s~~~~~l~~~~-----~d~~i~~~d~~~~~~~~~~~~  433 (517)
                      +-.++.++++..||.+.+++.+....   ........-.+.++...+..+.++.     .-+..+.|+++-.    ..+.
T Consensus        98 s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~----~t~~  173 (319)
T KOG4714|consen   98 TMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPI----KTLI  173 (319)
T ss_pred             cccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccc----cccc
Confidence            34567899999999999999876220   0000011111222222333333332     1234566666432    1111


Q ss_pred             CcccCceEEEeecCCC-CCcEEEEecCCCcEEEEecCCCc-eeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCC
Q 042434          434 GHSQNKYVIRSCFGGL-DGTFIASGSENSQIYIWNRRNSK-PIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGP  511 (517)
Q Consensus       434 ~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~  511 (517)
                      ........+.+.+.+| ....+++|+.||.+-+||.++.. +...+..|+.+++.+-|+|..+..|++++.||.+.-||-
T Consensus       174 ~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wda  253 (319)
T KOG4714|consen  174 PSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDA  253 (319)
T ss_pred             ccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcC
Confidence            1111111245555455 45678889999999999998874 556678899999999999999899999999999999997


Q ss_pred             CC
Q 042434          512 CQ  513 (517)
Q Consensus       512 ~~  513 (517)
                      .+
T Consensus       254 s~  255 (319)
T KOG4714|consen  254 ST  255 (319)
T ss_pred             CC
Confidence            63

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.75  E-value=4.1e-06  Score=75.13  Aligned_cols=220  Identities=18%  Similarity=0.135  Sum_probs=127.5

Q ss_pred             CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCC
Q 042434          243 DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSK  322 (517)
Q Consensus       243 dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~  322 (517)
                      +|+|..||..+++..-. ..+..-.....+. ..+++..+++++.++.+..||..+|+.+..+.... .+.... ..++.
T Consensus         2 ~g~l~~~d~~tG~~~W~-~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~-~~~~~~-~~~~~   77 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWS-YDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPG-PISGAP-VVDGG   77 (238)
T ss_dssp             TSEEEEEETTTTEEEEE-EECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSS-CGGSGE-EEETT
T ss_pred             CCEEEEEECCCCCEEEE-EECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccc-ccccee-eeccc
Confidence            67888888866643211 1221111222211 22356778888899999999999999887775422 211111 22455


Q ss_pred             eEEEeeCCCceeEEEEeCC-CCeeEee-eCcC--CCceEEEEEccCCCEEEEEeCCCcEEEEECCCceE-Eeec-cCCC-
Q 042434          323 RLVCGSSDTEKGIFMCDCD-GNEIKAW-RGTR--IPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAE-RVIS-EEHP-  395 (517)
Q Consensus       323 ~l~~~~~d~~v~i~~~~~~-~~~~~~~-~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~-~~~~-  395 (517)
                      .+++++.++.  ++.+|.. ++.+... ....  ...........++..++++..++.|..+|.++++. .... .... 
T Consensus        78 ~v~v~~~~~~--l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~  155 (238)
T PF13360_consen   78 RVYVGTSDGS--LYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG  155 (238)
T ss_dssp             EEEEEETTSE--EEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred             ccccccceee--eEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence            6777777775  9999955 4554442 2211  11122233333488889999999999999999883 2211 1111 


Q ss_pred             ---------eeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEE
Q 042434          396 ---------ITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIW  466 (517)
Q Consensus       396 ---------i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw  466 (517)
                               +..-.+..++ .++++..++.+..+|+.++. ......  ...   ..... ..++..+++++.++.|..|
T Consensus       156 ~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~-~~w~~~--~~~---~~~~~-~~~~~~l~~~~~~~~l~~~  227 (238)
T PF13360_consen  156 SSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGE-KLWSKP--ISG---IYSLP-SVDGGTLYVTSSDGRLYAL  227 (238)
T ss_dssp             S--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTE-EEEEEC--SS----ECECE-ECCCTEEEEEETTTEEEEE
T ss_pred             CcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCC-EEEEec--CCC---ccCCc-eeeCCEEEEEeCCCEEEEE
Confidence                     1122222344 77777777754444998873 222222  111   11111 3567778888799999999


Q ss_pred             ecCCCceeEE
Q 042434          467 NRRNSKPIEI  476 (517)
Q Consensus       467 d~~~~~~~~~  476 (517)
                      |+++|+.+.+
T Consensus       228 d~~tG~~~W~  237 (238)
T PF13360_consen  228 DLKTGKVVWQ  237 (238)
T ss_dssp             ETTTTEEEEE
T ss_pred             ECCCCCEEeE
Confidence            9999987643

...

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.75  E-value=1.9e-06  Score=84.82  Aligned_cols=205  Identities=20%  Similarity=0.290  Sum_probs=138.0

Q ss_pred             cEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCC-EEEEEECCCCCeEEEEeCCC-----eEEEEECC
Q 042434          224 EVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNP-VSFVAWSPDDTKLLTCGNAE-----VLKLWDVE  297 (517)
Q Consensus       224 ~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~-v~~l~~s~~~~~l~s~~~dg-----~i~iwd~~  297 (517)
                      .|.|  |++.+..+|.|+.+|.|.+.+    ..+.....+..+... |..+-...+.++|++.+.|+     .++||+++
T Consensus        27 ~isc--~~s~~~~vvigt~~G~V~~Ln----~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~le  100 (933)
T KOG2114|consen   27 AISC--CSSSTGSVVIGTADGRVVILN----SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLE  100 (933)
T ss_pred             ceeE--EcCCCceEEEeeccccEEEec----ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccc
Confidence            4544  568888999999999988876    345565777777777 55554444557888877765     48999985


Q ss_pred             CC------cEE---EEeC----CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC--CeeEeeeCcCCCceEEEEEc
Q 042434          298 TG------ICK---HTFG----DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG--NEIKAWRGTRIPKVLDLAVT  362 (517)
Q Consensus       298 ~~------~~~---~~~~----~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~--~~~~~~~~~~~~~i~~~~~~  362 (517)
                      .-      .++   +.+.    ....++.+++.+.+-+.+|+|-.+|.|..+.-|...  ..-.........+|+.+++.
T Consensus       101 k~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~  180 (933)
T KOG2114|consen  101 KVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALR  180 (933)
T ss_pred             ccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEe
Confidence            32      333   2222    135678899999999999999999995554444321  11122233334589999999


Q ss_pred             cCCCEEEEEeCCCcEEEEECCCce---EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEe-Ccc
Q 042434          363 PDGENLISVLSDKDIRILNLGTYA---ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYT-GHS  436 (517)
Q Consensus       363 ~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~  436 (517)
                      .++..++.+.....|.+|.+....   .....++.+..|.++++....+++++ +..+.+||.... .....+. ++.
T Consensus       181 ~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~-~~cfaf~~g~k  256 (933)
T KOG2114|consen  181 SDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGR-GPCFAFEVGEK  256 (933)
T ss_pred             cCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCc-ceeeeecCCCe
Confidence            999875555566678999887544   22445666788888887655455554 456999998765 4444444 443

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.73  E-value=3.5e-05  Score=68.83  Aligned_cols=242  Identities=17%  Similarity=0.150  Sum_probs=139.1

Q ss_pred             EEEEECC-CCCEEEEeeCCCc-EEEEEecCCCeeeEEEEeccCCCCE--EEEEECCCCCeEEEEe-----CCCeEEEEEC
Q 042434          226 WFVQFSN-NGEYLASSSSDCS-AIIWKVLEDSKLTLKHTLRSHQNPV--SFVAWSPDDTKLLTCG-----NAEVLKLWDV  296 (517)
Q Consensus       226 ~~~~~s~-~~~~l~t~~~dg~-i~iw~~~~~~~~~~~~~~~~h~~~v--~~l~~s~~~~~l~s~~-----~dg~i~iwd~  296 (517)
                      ..++.+| .+..++.+-.-|+ ..+||..++....   .+....+.-  -.-.||+||++|++.-     ..|.|-|||.
T Consensus         8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~---~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~   84 (305)
T PF07433_consen    8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQ---RLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA   84 (305)
T ss_pred             cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceee---EEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence            4567788 5667777776665 5688887664432   222211111  1258999999999863     3579999999


Q ss_pred             C-CCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCC
Q 042434          297 E-TGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDK  375 (517)
Q Consensus       297 ~-~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  375 (517)
                      . +.+.+..+..+.-....+.+.|||+.|+++-..    |..--..+..                      .+=..+.+.
T Consensus        85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGG----I~Thpd~GR~----------------------kLNl~tM~p  138 (305)
T PF07433_consen   85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGG----IETHPDSGRA----------------------KLNLDTMQP  138 (305)
T ss_pred             cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCC----CccCcccCce----------------------ecChhhcCC
Confidence            8 667788888887777889999999888776322    1100000000                      011111222


Q ss_pred             cEEEEECCCce--EE--e--eccCCCeeEEEEcCCCCEEEEEeCCCe-------EEEEEcCCCCccceEEeCcc----cC
Q 042434          376 DIRILNLGTYA--ER--V--ISEEHPITSLSVSVDCKNFIVNLNSQE-------IHMWDVAGKWEKPFKYTGHS----QN  438 (517)
Q Consensus       376 ~i~i~d~~~~~--~~--~--~~~~~~i~~~~~s~~~~~l~~~~~d~~-------i~~~d~~~~~~~~~~~~~~~----~~  438 (517)
                      .+...|..++.  ..  .  ..+...+..+++.++|..++..-..|.       +.+++...   ....+....    .-
T Consensus       139 sL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~---~~~~~~~p~~~~~~l  215 (305)
T PF07433_consen  139 SLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG---ALRLLPAPEEQWRRL  215 (305)
T ss_pred             ceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC---cceeccCChHHHHhh
Confidence            33334444433  11  1  124446777778777765554433321       22333221   111111110    01


Q ss_pred             ceEEEeecCCCCCcEEEEec-CCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCC
Q 042434          439 KYVIRSCFGGLDGTFIASGS-ENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDD  503 (517)
Q Consensus       439 ~~~i~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~d  503 (517)
                      ...+-+++++.++.++++.+ ..|.+.+||..+++.+....-  ..+..++..+++  +++|.+..
T Consensus       216 ~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l--~D~cGva~~~~~--f~~ssG~G  277 (305)
T PF07433_consen  216 NGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL--PDACGVAPTDDG--FLVSSGQG  277 (305)
T ss_pred             CCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc--CceeeeeecCCc--eEEeCCCc
Confidence            12245556688888775555 567899999999999887653  456777777776  55555543

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.72  E-value=5.1e-07  Score=88.31  Aligned_cols=272  Identities=14%  Similarity=0.111  Sum_probs=152.6

Q ss_pred             EEEEEECCCCCEEEEee----CCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc
Q 042434          225 VWFVQFSNNGEYLASSS----SDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI  300 (517)
Q Consensus       225 v~~~~~s~~~~~l~t~~----~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~  300 (517)
                      -+-.+|+|...++|.++    ..|+|.||-- ++.. ..-.+..   -.+++++|+|..-.|++|-.-|.+.+|...+.+
T Consensus        18 sti~SWHPsePlfAVA~fS~er~GSVtIfad-tGEP-qr~Vt~P---~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e   92 (1416)
T KOG3617|consen   18 STISSWHPSEPLFAVASFSPERGGSVTIFAD-TGEP-QRDVTYP---VHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE   92 (1416)
T ss_pred             ccccccCCCCceeEEEEecCCCCceEEEEec-CCCC-Ccccccc---eehhhhccChHHHHHhhccccceeEEEecCCce
Confidence            34457899888888775    3688999843 3332 1111222   235679999999889999999999999988877


Q ss_pred             EEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEe-eeCcCC-C--ceEEEEEccCCC------EEEE
Q 042434          301 CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKA-WRGTRI-P--KVLDLAVTPDGE------NLIS  370 (517)
Q Consensus       301 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~-~~~~~~-~--~i~~~~~~~~~~------~l~~  370 (517)
                      .......|..+|..+.|+++|..++++..-|.+.+|.+|..+..... +..+.. .  ...+...++++.      ..++
T Consensus        93 ~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaV  172 (1416)
T KOG3617|consen   93 THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAV  172 (1416)
T ss_pred             eeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhc
Confidence            66666789999999999999999999999999888888865432111 111111 1  223344455532      1223


Q ss_pred             EeCCCcEE-EEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCc--------ccCce
Q 042434          371 VLSDKDIR-ILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGH--------SQNKY  440 (517)
Q Consensus       371 ~~~dg~i~-i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~--------~~~~~  440 (517)
                      .+.+..+- .++.+... .....       -.-.|+|..++.++.+|+|+..|-.+....+.+....        .....
T Consensus       173 tgDe~alD~~fnwk~~~a~rs~~-------ksgv~~g~~F~~~~~~GtVyyvdq~g~~~~V~k~dS~vQmLf~~~~eai~  245 (1416)
T KOG3617|consen  173 TGDESALDEPFNWKESLAERSDE-------KSGVPKGTEFLFAGKSGTVYYVDQNGRQRTVHKLDSEVQMLFMGYCEAIS  245 (1416)
T ss_pred             cCchhhhcccccCccchhhcccc-------ccCCCCCcEEEEEcCCceEEEEcCCCcEEEEEEccchHHHHHhcccceEE
Confidence            33333222 23222111 00000       1124677777777788888877755443333322211        11110


Q ss_pred             EE------EeecCCCCCcE---------EEEecCCCcEEEEecCCCce----eEEecCCCCCeeEEEecCCCCcEEEEee
Q 042434          441 VI------RSCFGGLDGTF---------IASGSENSQIYIWNRRNSKP----IEILSGHSMTVNCVSWNPKRPKMLASAS  501 (517)
Q Consensus       441 ~i------~~~~~s~~~~~---------l~~~~~dg~i~iwd~~~~~~----~~~~~~h~~~v~~v~~~~~~~~~l~s~~  501 (517)
                      ++      ...+..+.|..         .=.|+..|.|-+=.. .|-+    ...+ .....+++++++..+ ..++.|.
T Consensus       246 ~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEs-sGvLr~~eKyg~-e~ge~~~c~cY~~~~-~~l~agt  322 (1416)
T KOG3617|consen  246 IIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSES-SGVLRKSEKYGL-ELGEGILCMCYGEKE-IRLWAGT  322 (1416)
T ss_pred             EEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccc-cccccCCcchhh-hcCCceEEEEEeccc-eEEEecc
Confidence            00      00000111100         001122222221111 1110    0011 124679999999988 6899999


Q ss_pred             CCCcEEEeCC
Q 042434          502 DDHTIRIWGP  511 (517)
Q Consensus       502 ~dg~v~iw~~  511 (517)
                      ..|.+.+|.-
T Consensus       323 ~~gnv~~w~~  332 (1416)
T KOG3617|consen  323 KEGNVTIWLD  332 (1416)
T ss_pred             cCCcEEEeee
Confidence            9999999964

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.69  E-value=1.9e-05  Score=70.48  Aligned_cols=189  Identities=12%  Similarity=0.069  Sum_probs=132.9

Q ss_pred             EEECCCCCEEEEe-----eCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEe----------------
Q 042434          228 VQFSNNGEYLASS-----SSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCG----------------  286 (517)
Q Consensus       228 ~~~s~~~~~l~t~-----~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~----------------  286 (517)
                      -.||+||++|++.     +..|.|-|||..  ..+..+..+..|.-.-..+.+.|||+.|+++.                
T Consensus        56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~--~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl  133 (305)
T PF07433_consen   56 GVFSPDGRLLYTTENDYETGRGVIGVYDAA--RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNL  133 (305)
T ss_pred             EEEcCCCCEEEEeccccCCCcEEEEEEECc--CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecCh
Confidence            4799999999986     345889999996  45677888888888888999999998877762                


Q ss_pred             --CCCeEEEEECCCCcEEEE--e--CCCCCceEEEEEeCCCCeEEEeeCCCce-----eEEEEeCCCCeeEeeeC-----
Q 042434          287 --NAEVLKLWDVETGICKHT--F--GDHGFIVSSCAWFPDSKRLVCGSSDTEK-----GIFMCDCDGNEIKAWRG-----  350 (517)
Q Consensus       287 --~dg~i~iwd~~~~~~~~~--~--~~~~~~v~~i~~~~~~~~l~~~~~d~~v-----~i~~~~~~~~~~~~~~~-----  350 (517)
                        .+-.+...|..+|+.+..  +  ..|...|..+++.++|..++..-..|.-     -+..++..+ .+..+..     
T Consensus       134 ~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~-~~~~~~~p~~~~  212 (305)
T PF07433_consen  134 DTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG-ALRLLPAPEEQW  212 (305)
T ss_pred             hhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC-cceeccCChHHH
Confidence              123566778888988776  4  2477899999999998877766544431     133333322 2222221     


Q ss_pred             -cCCCceEEEEEccCCCEEEEEe-CCCcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEE
Q 042434          351 -TRIPKVLDLAVTPDGENLISVL-SDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWD  421 (517)
Q Consensus       351 -~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d  421 (517)
                       .-.+.+-++++++++..+++.+ ..+.+.+||..++.......-..+..++..+++  +++++..|.+...+
T Consensus       213 ~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D~cGva~~~~~--f~~ssG~G~~~~~~  283 (305)
T PF07433_consen  213 RRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPDACGVAPTDDG--FLVSSGQGQLIRLS  283 (305)
T ss_pred             HhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCceeeeeecCCc--eEEeCCCccEEEcc
Confidence             1124788999999998776555 567899999999886666666677777777776  55555556544333

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.67  E-value=3.4e-07  Score=77.23  Aligned_cols=168  Identities=12%  Similarity=0.117  Sum_probs=100.1

Q ss_pred             cEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeC-----C
Q 042434          214 TVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGN-----A  288 (517)
Q Consensus       214 ~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-----d  288 (517)
                      +.+.+..|.++-.+-+.+-.++-++++..||.+.+.+.+..  +........-...-.+.+....++.+.+++.     -
T Consensus        81 ~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~--~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~  158 (319)
T KOG4714|consen   81 PFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKD--LALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQ  158 (319)
T ss_pred             ceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHH--HhhhhhcccccccccccceeecccEEecCCcceEeec
Confidence            34455556655555555556778999999999999998532  1111111111111122222334555554321     2


Q ss_pred             CeEEEEECCCCcEEEEeCCCCCceEEEEEeCCC-CeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccC-CC
Q 042434          289 EVLKLWDVETGICKHTFGDHGFIVSSCAWFPDS-KRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPD-GE  366 (517)
Q Consensus       289 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~  366 (517)
                      +..++|+++..+....-......|++++-+|.. +.+++|+.||.+.+|.|+....+...+..+ ..++..+-|+|. +.
T Consensus       159 d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ah-k~~i~eV~FHpk~p~  237 (319)
T KOG4714|consen  159 DNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAH-KAEIWEVHFHPKNPE  237 (319)
T ss_pred             cceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHh-hhhhhheeccCCCch
Confidence            345666654433222222223448899999864 566778888995555555444444344443 358899999994 56


Q ss_pred             EEEEEeCCCcEEEEECCC
Q 042434          367 NLISVLSDKDIRILNLGT  384 (517)
Q Consensus       367 ~l~~~~~dg~i~i~d~~~  384 (517)
                      .|++++.||.+..||..+
T Consensus       238 ~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  238 HLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             heeEecCCCcEEEEcCCC
Confidence            899999999999999875

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.67  E-value=9.6e-08  Score=83.71  Aligned_cols=143  Identities=14%  Similarity=0.141  Sum_probs=107.2

Q ss_pred             EEEeCCCcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC----CccceEEeCcccCceEEEe
Q 042434          369 ISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK----WEKPFKYTGHSQNKYVIRS  444 (517)
Q Consensus       369 ~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~----~~~~~~~~~~~~~~~~i~~  444 (517)
                      ++.+.+..+-+-|+.++....+.....|.++.|...+..+..|+.+|.|..+|++.+    ......+ -|......+..
T Consensus       228 fs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~  306 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQI  306 (425)
T ss_pred             ecccccceeEEEEeecccccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhh
Confidence            455667778899999988777778889999999999999999999999999999764    1222222 23333333333


Q ss_pred             ecCCCCCcEEEEecCCCcEEEEecCCCce---eEEecCCCCCeeEE--EecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434          445 CFGGLDGTFIASGSENSQIYIWNRRNSKP---IEILSGHSMTVNCV--SWNPKRPKMLASASDDHTIRIWGPCQSS  515 (517)
Q Consensus       445 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~h~~~v~~v--~~~~~~~~~l~s~~~dg~v~iw~~~~~~  515 (517)
                      +  ..++.+|++.+.+|+|++||.+.-++   +.++.||...-.-+  -.++.. ..++++|+|...|||.++.|.
T Consensus       307 L--q~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~ee-g~I~s~GdDcytRiWsl~~gh  379 (425)
T KOG2695|consen  307 L--QFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEE-GSIFSVGDDCYTRIWSLDSGH  379 (425)
T ss_pred             h--ccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccccccc-ceEEEccCeeEEEEEecccCc
Confidence            2  23678999999999999999987766   88888886543333  334554 578899999999999998764

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.66  E-value=1e-05  Score=79.86  Aligned_cols=206  Identities=11%  Similarity=0.103  Sum_probs=133.7

Q ss_pred             EECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCc-eEEEEEeCCCCeEEEeeCCCc---eeEEEEeCCC----C--
Q 042434          274 AWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFI-VSSCAWFPDSKRLVCGSSDTE---KGIFMCDCDG----N--  343 (517)
Q Consensus       274 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~i~~~~~~~~l~~~~~d~~---v~i~~~~~~~----~--  343 (517)
                      +|++.+..++.|+.+|.|.+.+- .-+.++.++.+... |..+....+..+|++.+.|+.   +.+.+|+.+.    .  
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP  108 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP  108 (933)
T ss_pred             EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence            46778889999999999888873 34445777777666 444444444467888777655   3467777642    2  


Q ss_pred             -ee---Eeee---CcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCC------ceEEeeccCCCeeEEEEcCCCCEEEE
Q 042434          344 -EI---KAWR---GTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGT------YAERVISEEHPITSLSVSVDCKNFIV  410 (517)
Q Consensus       344 -~~---~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~------~~~~~~~~~~~i~~~~~s~~~~~l~~  410 (517)
                       .+   +.+.   .....++.+++++.+-+.+++|-.+|.|..+.-+-      ..........+|+.+++..+++.++.
T Consensus       109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF  188 (933)
T KOG2114|consen  109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF  188 (933)
T ss_pred             ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence             11   1111   11234788899999999999999999999885321      11344456779999999999988555


Q ss_pred             EeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEec-CCCCCe
Q 042434          411 NLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILS-GHSMTV  484 (517)
Q Consensus       411 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~h~~~v  484 (517)
                      ......|.+|.+.+..........+..+   +.|..+++....+++++. ..+++|+.....+-.++. ||....
T Consensus       189 v~Tt~~V~~y~l~gr~p~~~~ld~~G~~---lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~~g~kk~~  259 (933)
T KOG2114|consen  189 VATTEQVMLYSLSGRTPSLKVLDNNGIS---LNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFEVGEKKEM  259 (933)
T ss_pred             EEecceeEEEEecCCCcceeeeccCCcc---ceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeecCCCeEEE
Confidence            5566789999998653122223333333   444444444332444443 359999988777777776 665443

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.64  E-value=3.9e-06  Score=80.94  Aligned_cols=118  Identities=14%  Similarity=0.141  Sum_probs=89.0

Q ss_pred             ccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc
Q 042434          221 HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI  300 (517)
Q Consensus       221 h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~  300 (517)
                      |...|.--+++..+++++.|+.-|.+++|+-..+.-  ......+..+.+..+..+++..++|.|+..|.|.++-+..+.
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~--~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~  109 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEM--RKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKEL  109 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhh--hcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccC
Confidence            455566666777889999999999999998764422  222233345667778889999999999999999999886643


Q ss_pred             EE-----EEe-CCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeC
Q 042434          301 CK-----HTF-GDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDC  340 (517)
Q Consensus       301 ~~-----~~~-~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~  340 (517)
                      +.     ... +.|+..|++++|++|+..+++|...|.|.....|.
T Consensus       110 p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  110 PRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             CCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            21     111 24688999999999999999999999966666655

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.63  E-value=5.4e-07  Score=88.98  Aligned_cols=179  Identities=12%  Similarity=0.129  Sum_probs=129.8

Q ss_pred             CCccccccCCCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEE
Q 042434          193 SSVAISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSF  272 (517)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~  272 (517)
                      .....+...+....++....+..+...-..+.|+-++  .+++++.+|...|+|.+-|..   ..+.++++..|++.|.+
T Consensus       148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~---s~~~iht~~aHs~siSD  222 (1118)
T KOG1275|consen  148 STLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPN---SFETIHTFDAHSGSISD  222 (1118)
T ss_pred             cceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCC---cCceeeeeeccccceee
Confidence            3335566666666666666666666655555566555  477899999999999999984   45778999999999987


Q ss_pred             EEECCCCCeEEEEeCC---------CeEEEEECCCCcEEEEeCCCCCceEEEEEeCC-CCeEEEeeCCCceeEEEEeC--
Q 042434          273 VAWSPDDTKLLTCGNA---------EVLKLWDVETGICKHTFGDHGFIVSSCAWFPD-SKRLVCGSSDTEKGIFMCDC--  340 (517)
Q Consensus       273 l~~s~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~d~~v~i~~~~~--  340 (517)
                      +..  .|+.|++||..         ..|+|||++..+.+..+..+.++ .-+.|+|. ...+++++..|.  .-..|.  
T Consensus       223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq--~q~vd~~~  297 (1118)
T KOG1275|consen  223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQ--FQFVDTAT  297 (1118)
T ss_pred             eec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccc--eeeccccc
Confidence            766  48899999764         46899999988777666544443 55778885 457888888888  555552  


Q ss_pred             -CCCeeEeeeC-cCCCceEEEEEccCCCEEEEEeCCCcEEEEE
Q 042434          341 -DGNEIKAWRG-TRIPKVLDLAVTPDGENLISVLSDKDIRILN  381 (517)
Q Consensus       341 -~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  381 (517)
                       .+........ ...+.+..++++++++.++.|..+|.|.+|.
T Consensus       298 lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  298 LSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             cCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence             2222222222 2223599999999999999999999999997

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.60  E-value=4.9e-06  Score=81.45  Aligned_cols=182  Identities=12%  Similarity=0.112  Sum_probs=123.4

Q ss_pred             cCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcE
Q 042434          222 KNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGIC  301 (517)
Q Consensus       222 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~  301 (517)
                      .+.+.|++++  +++++.|+.+|.|++.+....    + .+...|...      ..+|.++++|+.||+|.|-.+-+.+.
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~----~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~  105 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN----P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE  105 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCCc----c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcc
Confidence            4556666664  468999999999999987532    1 233334443      56899999999999999999988877


Q ss_pred             EEEeCCCCCceEEEEEeCC-----CCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCc
Q 042434          302 KHTFGDHGFIVSSCAWFPD-----SKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKD  376 (517)
Q Consensus       302 ~~~~~~~~~~v~~i~~~~~-----~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  376 (517)
                      ..++ ....++.+++++|+     .+.+++|+..| +.++.-+.-++..........++|.++.|.  |++++-++.+| 
T Consensus       106 ~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-  180 (846)
T KOG2066|consen  106 ITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-  180 (846)
T ss_pred             ceeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-
Confidence            7666 45678999999997     56899999988 323322222333333334445689999885  66888877776 


Q ss_pred             EEEEECCCceE-EeeccCC-------CeeEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 042434          377 IRILNLGTYAE-RVISEEH-------PITSLSVSVDCKNFIVNLNSQEIHMWDVA  423 (517)
Q Consensus       377 i~i~d~~~~~~-~~~~~~~-------~i~~~~~s~~~~~l~~~~~d~~i~~~d~~  423 (517)
                      |++||+.+.+. .......       -...+.|.++.+ ++.| ...+|++..++
T Consensus       181 v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIG-W~d~v~i~~I~  233 (846)
T KOG2066|consen  181 VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIG-WGDSVKICSIK  233 (846)
T ss_pred             cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEe-cCCeEEEEEEe
Confidence            99999988772 2222111       234566766543 3333 44567887776

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=7.2e-07  Score=81.13  Aligned_cols=246  Identities=12%  Similarity=0.107  Sum_probs=159.6

Q ss_pred             cCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCC--C-cEEEEeCCCCCceEEEEEeCCCCeEEEeeC-CCceeEEEEeC
Q 042434          265 SHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVET--G-ICKHTFGDHGFIVSSCAWFPDSKRLVCGSS-DTEKGIFMCDC  340 (517)
Q Consensus       265 ~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~--~-~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-d~~v~i~~~~~  340 (517)
                      .|.+.|+.+.-+ -.+++.+++.||.++.|.-..  | +.+..+..|-..|.+++.+-++.++.+.+. |..+++  +|.
T Consensus         7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~Kv--fDv   83 (558)
T KOG0882|consen    7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKV--FDV   83 (558)
T ss_pred             cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeE--EEe
Confidence            377777776544 457999999999999997543  1 334455678888999999999999999777 888444  444


Q ss_pred             CCCeeE-eeeCcCCCceEEEEEccCCC--EE-EEEeCCCcEEEEECCCce----EEeeccCCCeeEEEEcCCCCEEEEEe
Q 042434          341 DGNEIK-AWRGTRIPKVLDLAVTPDGE--NL-ISVLSDKDIRILNLGTYA----ERVISEEHPITSLSVSVDCKNFIVNL  412 (517)
Q Consensus       341 ~~~~~~-~~~~~~~~~i~~~~~~~~~~--~l-~~~~~dg~i~i~d~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~  412 (517)
                      ..-... .....-.+...++..++...  .+ +....++.+.++|-....    .....|..+|..+.+.+.+..+++..
T Consensus        84 En~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD  163 (558)
T KOG0882|consen   84 ENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSID  163 (558)
T ss_pred             eccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecc
Confidence            321111 11111111122222233211  22 333467899999976544    33345778999999999999999999


Q ss_pred             CCCeEEEEEcCCCCccce-----E------EeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEec---
Q 042434          413 NSQEIHMWDVAGKWEKPF-----K------YTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILS---  478 (517)
Q Consensus       413 ~d~~i~~~d~~~~~~~~~-----~------~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---  478 (517)
                      ..|.|.-|......+.+.     .      +.+.........+..++|+|..+.+-+.|..|++++.++|+++..+.   
T Consensus       164 ~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~  243 (558)
T KOG0882|consen  164 ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVL  243 (558)
T ss_pred             ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccc
Confidence            999999999864211111     1      11222223335566679999999999999999999999998765432   


Q ss_pred             -----------------------------CCC-CCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434          479 -----------------------------GHS-MTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS  515 (517)
Q Consensus       479 -----------------------------~h~-~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~  515 (517)
                                                   .|. ..-+.+.|...+ ++|.-++-=| |++.++.++.
T Consensus       244 t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~-~flly~t~~g-ikvin~~tn~  308 (558)
T KOG0882|consen  244 TDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESG-NFLLYGTILG-IKVINLDTNT  308 (558)
T ss_pred             hhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCC-CEEEeeccee-EEEEEeecCe
Confidence                                         121 123556777777 6777666554 6666665543

>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions

Probab=98.57  E-value=9e-08  Score=51.41  Aligned_cols=27  Identities=22%  Similarity=0.432  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHhhcChHHHHHHHhhhc
Q 042434           17 YEFVRVVVQCLYSLGYQKSASCLESES   43 (517)
Q Consensus        17 ~~~~~li~q~L~~~g~~~s~~~l~~Es   43 (517)
                      +++++||++||.++||.+||.+|.+|+
T Consensus         1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea   27 (27)
T PF08513_consen    1 EELNQLIYDYLVENGYKETAKAFAKEA   27 (27)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence            589999999999999999999999996

The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.57  E-value=1.6e-06  Score=84.74  Aligned_cols=183  Identities=17%  Similarity=0.205  Sum_probs=127.1

Q ss_pred             CCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-E
Q 042434          309 GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-E  387 (517)
Q Consensus       309 ~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~  387 (517)
                      ...++|++++  ++.|+.|+.+|.  ++.++..+.. .....+...       ..+|.++++|+.||+|.|..+-+.. .
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~--v~~~~~~~~~-~~~~~~s~~-------~~~Gey~asCS~DGkv~I~sl~~~~~~  106 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGA--VYLTTCQGNP-KTNFDHSSS-------ILEGEYVASCSDDGKVVIGSLFTDDEI  106 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccce--EEEEecCCcc-ccccccccc-------ccCCceEEEecCCCcEEEeeccCCccc
Confidence            3456666665  679999999999  7777777765 333333211       5689999999999999999988877 5


Q ss_pred             EeeccCCCeeEEEEcCC-----CCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCc
Q 042434          388 RVISEEHPITSLSVSVD-----CKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQ  462 (517)
Q Consensus       388 ~~~~~~~~i~~~~~s~~-----~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~  462 (517)
                      .......++.+++++|+     .+.+++|+..| +.++.-+=...... ...+.... .|.++.|  .|+++|-++.+| 
T Consensus       107 ~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~-v~l~~~eG-~I~~i~W--~g~lIAWand~G-  180 (846)
T KOG2066|consen  107 TQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDS-VVLSEGEG-PIHSIKW--RGNLIAWANDDG-  180 (846)
T ss_pred             eeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccc-eeeecCcc-ceEEEEe--cCcEEEEecCCC-
Confidence            55777889999999997     56789998888 77776421111111 12222222 2444443  688999998887 


Q ss_pred             EEEEecCCCceeEEecCCCCC------eeEEEecCCCCcEEEEeeCCCcEEEeCCC
Q 042434          463 IYIWNRRNSKPIEILSGHSMT------VNCVSWNPKRPKMLASASDDHTIRIWGPC  512 (517)
Q Consensus       463 i~iwd~~~~~~~~~~~~h~~~------v~~v~~~~~~~~~l~s~~~dg~v~iw~~~  512 (517)
                      |+|||+.+++.+..++.....      -..+.|.++.  .|+. |+..+|+|..++
T Consensus       181 v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~--~LVI-GW~d~v~i~~I~  233 (846)
T KOG2066|consen  181 VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED--RLVI-GWGDSVKICSIK  233 (846)
T ss_pred             cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC--eEEE-ecCCeEEEEEEe
Confidence            899999998888777643333      3568888876  3443 444568887776

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.55  E-value=8.4e-08  Score=94.11  Aligned_cols=199  Identities=13%  Similarity=0.119  Sum_probs=140.0

Q ss_pred             cEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCC--cE
Q 042434          300 ICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDK--DI  377 (517)
Q Consensus       300 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i  377 (517)
                      +..++|..+....+|++|+.+.++|+.|+..|.  |..++..+.........|.+.++.+.-+.+|..+++.+.-.  -.
T Consensus      1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Ge--ik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGE--IKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred             ccchhhhccccceeeEEeecCCceEEeeeccce--EEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence            345567788899999999999999999999999  66667665555555555667899999999999777665443  46


Q ss_pred             EEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEe
Q 042434          378 RILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASG  457 (517)
Q Consensus       378 ~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  457 (517)
                      .+|++.+-- .....-..-.++.|+.....-++|+......+||+.+.......+.+.....+.-.+..|+|+..+++- 
T Consensus      1170 aLW~~~s~~-~~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln- 1247 (1516)
T KOG1832|consen 1170 ALWDASSTG-GPRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN- 1247 (1516)
T ss_pred             HHhcccccc-CccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee-
Confidence            789886521 111111234567777766666777777889999999885555446555555555567778999988873 


Q ss_pred             cCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434          458 SENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ  513 (517)
Q Consensus       458 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~  513 (517)
                        ||  .+||++..+.++.|...+..+ .=.|+|.| .-++.-+     -|||+++
T Consensus      1248 --dG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g-~eVIINS-----EIwD~RT 1292 (1516)
T KOG1832|consen 1248 --DG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSG-NEVIINS-----EIWDMRT 1292 (1516)
T ss_pred             --Cc--eeeeeccHHHHhhhhhheecc-cccccCCC-ceEEeec-----hhhhhHH
Confidence              55  389999888888776544322 33699999 4555544     3788765

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.55  E-value=8.9e-06  Score=73.21  Aligned_cols=248  Identities=13%  Similarity=0.059  Sum_probs=134.4

Q ss_pred             CcccEEEeccccCcEEEEEECCCCC-EEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCC-CeEEEEeCC
Q 042434          211 PTETVQILTEHKNEVWFVQFSNNGE-YLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDD-TKLLTCGNA  288 (517)
Q Consensus       211 ~~~~~~~l~~h~~~v~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~d  288 (517)
                      ..+....+.+|...|..++|||..+ ++..++.+..|+|.|+++.   .....+..| ..+++++|.-|. ++|..|-..
T Consensus       182 ~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~---~~vssy~a~-~~~wSC~wDlde~h~IYaGl~n  257 (463)
T KOG1645|consen  182 DFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS---CVVSSYIAY-NQIWSCCWDLDERHVIYAGLQN  257 (463)
T ss_pred             CcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccc---eeeeheecc-CCceeeeeccCCcceeEEeccC
Confidence            3344557778999999999999766 7888999999999999755   445566666 889999998865 667788889


Q ss_pred             CeEEEEECCCCcE-EEEeCC--CCCceEEEEE------eCCCCeEEEeeCCCceeEEEEeCCCCe-eEeeeCcCCCceEE
Q 042434          289 EVLKLWDVETGIC-KHTFGD--HGFIVSSCAW------FPDSKRLVCGSSDTEKGIFMCDCDGNE-IKAWRGTRIPKVLD  358 (517)
Q Consensus       289 g~i~iwd~~~~~~-~~~~~~--~~~~v~~i~~------~~~~~~l~~~~~d~~v~i~~~~~~~~~-~~~~~~~~~~~i~~  358 (517)
                      |.|.|||++..+- ...+.+  ...+|..++.      .+.+.+++....+-.  .|.+...... .........+...+
T Consensus       258 G~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l~--f~ei~~s~~~~p~vlele~pG~cis  335 (463)
T KOG1645|consen  258 GMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVLQ--FYEIVFSAECLPCVLELEPPGICIS  335 (463)
T ss_pred             ceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehhhh--hhhhhccccCCCcccccCCCcceee
Confidence            9999999976432 222211  1334444333      234555665555533  3322222211 12222233345666


Q ss_pred             EEEccCCCEEEEEeCCC-------cEEE-EECCCce---EEeecc-CCC-----eeEEEE-cCCCCEEEE-EeCCCeEEE
Q 042434          359 LAVTPDGENLISVLSDK-------DIRI-LNLGTYA---ERVISE-EHP-----ITSLSV-SVDCKNFIV-NLNSQEIHM  419 (517)
Q Consensus       359 ~~~~~~~~~l~~~~~dg-------~i~i-~d~~~~~---~~~~~~-~~~-----i~~~~~-s~~~~~l~~-~~~d~~i~~  419 (517)
                      +.+.+..+.++......       .+-. -|..++.   .....+ +..     -+...+ .++.++++. +...+.+.+
T Consensus       336 mqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil  415 (463)
T KOG1645|consen  336 MQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELIL  415 (463)
T ss_pred             eeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEE
Confidence            66666555554443321       0100 0111111   000000 110     111122 234444433 344568999


Q ss_pred             EEcCCCCccceEEeCcccCceEEEeecCCCCC-cEEEEecCCCcEEEEecC
Q 042434          420 WDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDG-TFIASGSENSQIYIWNRR  469 (517)
Q Consensus       420 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iwd~~  469 (517)
                      ||..+. ...+.+.-. .....+  +.+.-++ .||++-. |..++||..+
T Consensus       416 ~D~~s~-evvQ~l~~~-epv~Di--cp~~~n~~syLa~LT-d~~v~Iyk~e  461 (463)
T KOG1645|consen  416 QDPHSF-EVVQTLALS-EPVLDI--CPNDTNGSSYLALLT-DDRVHIYKNE  461 (463)
T ss_pred             eccchh-heeeecccC-cceeec--ceeecCCcchhhhee-cceEEEEecC
Confidence            999876 555555433 222222  2223333 4555544 5567777644

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.50  E-value=0.00024  Score=65.59  Aligned_cols=295  Identities=17%  Similarity=0.130  Sum_probs=141.1

Q ss_pred             CCCcccEEEeccccCcEEEE-----EECCCCCEEEEee-CCCcEEEE--EecCCCeeeEEEEeccCC-CCEEEEEECCCC
Q 042434          209 QIPTETVQILTEHKNEVWFV-----QFSNNGEYLASSS-SDCSAIIW--KVLEDSKLTLKHTLRSHQ-NPVSFVAWSPDD  279 (517)
Q Consensus       209 ~~~~~~~~~l~~h~~~v~~~-----~~s~~~~~l~t~~-~dg~i~iw--~~~~~~~~~~~~~~~~h~-~~v~~l~~s~~~  279 (517)
                      ..++..+..|..+.+.-..+     +|.++|+.|+.++ .||.-.+|  |+.++.    +..+..+. .......++|++
T Consensus        17 ~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~----i~QLTdg~g~~~~g~~~s~~~   92 (386)
T PF14583_consen   17 PDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGE----ITQLTDGPGDNTFGGFLSPDD   92 (386)
T ss_dssp             TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-E----EEE---SS-B-TTT-EE-TTS
T ss_pred             CCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCE----EEECccCCCCCccceEEecCC
Confidence            33445555555444333333     4677887666544 46665555  554332    23333332 222246677888


Q ss_pred             CeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEe--CCCCeEEEeeC---CC-----------------ceeEEE
Q 042434          280 TKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWF--PDSKRLVCGSS---DT-----------------EKGIFM  337 (517)
Q Consensus       280 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~--~~~~~l~~~~~---d~-----------------~v~i~~  337 (517)
                      +.++-......|.-.|+++.+....+......+-...|.  .|+..++..-.   |.                 ..+|+.
T Consensus        93 ~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~  172 (386)
T PF14583_consen   93 RALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFT  172 (386)
T ss_dssp             SEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEE
T ss_pred             CeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEE
Confidence            888766666789999999998777776666666656664  34555443211   11                 124667


Q ss_pred             EeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCC-----cEEEEECC--CceE-Eeec--cCCCeeEEEEcCCCCE
Q 042434          338 CDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDK-----DIRILNLG--TYAE-RVIS--EEHPITSLSVSVDCKN  407 (517)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~--~~~~-~~~~--~~~~i~~~~~s~~~~~  407 (517)
                      .++.+.......... ..+..+.++|....+++=+..|     .-+||-++  .... ....  ....+..=-|.|||..
T Consensus       173 idl~tG~~~~v~~~~-~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~  251 (386)
T PF14583_consen  173 IDLKTGERKVVFEDT-DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGST  251 (386)
T ss_dssp             EETTT--EEEEEEES-S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-
T ss_pred             EECCCCceeEEEecC-ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCE
Confidence            777766665554433 3678899999777666554433     12556443  3321 1111  2233555568999987


Q ss_pred             EEEEeC-----CCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCC----------------cEEEE
Q 042434          408 FIVNLN-----SQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENS----------------QIYIW  466 (517)
Q Consensus       408 l~~~~~-----d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg----------------~i~iw  466 (517)
                      +..-+.     +..|.-+|+.+....  .+. ....  .... ..++||++++-=+.|.                -|+++
T Consensus       252 i~y~~~~~~~~~~~i~~~d~~t~~~~--~~~-~~p~--~~H~-~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~  325 (386)
T PF14583_consen  252 IWYDSYTPGGQDFWIAGYDPDTGERR--RLM-EMPW--CSHF-MSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLF  325 (386)
T ss_dssp             EEEEEEETTT--EEEEEE-TTT--EE--EEE-EE-S--EEEE-EE-TTSSEEEEEE-------------------EEEEE
T ss_pred             EEEEeecCCCCceEEEeeCCCCCCce--EEE-eCCc--eeee-EEcCCCCEEEecCCCCCccccccccceecCCcEEEEe
Confidence            765332     335667777665222  111 1111  1222 2278998887544432                56778


Q ss_pred             ecCCCceeEE---------ecCCCC-CeeEEEecCCCCcEEEEeeCCCcEEEeCCCCC
Q 042434          467 NRRNSKPIEI---------LSGHSM-TVNCVSWNPKRPKMLASASDDHTIRIWGPCQS  514 (517)
Q Consensus       467 d~~~~~~~~~---------~~~h~~-~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~  514 (517)
                      ++..++....         +.++.. .=..+.|+||+..+|.++...|...||-++-+
T Consensus       326 ~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~i~  383 (386)
T PF14583_consen  326 DVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVEIP  383 (386)
T ss_dssp             ETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE--
T ss_pred             ccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEeCc
Confidence            8877654321         111111 12568999999888888889998888765443

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.50  E-value=2.7e-05  Score=74.68  Aligned_cols=189  Identities=20%  Similarity=0.180  Sum_probs=120.0

Q ss_pred             ccCCCCEEEEEECCCCCeEEEEe---CC-CeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEE-eeCCCceeEEEE
Q 042434          264 RSHQNPVSFVAWSPDDTKLLTCG---NA-EVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVC-GSSDTEKGIFMC  338 (517)
Q Consensus       264 ~~h~~~v~~l~~s~~~~~l~s~~---~d-g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~~~d~~v~i~~~  338 (517)
                      ..-...+..-+|+|++..++..+   .. ..+.++++.+++...... ....-...+|+|||+.++. ...||...||..
T Consensus       189 ~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~  267 (425)
T COG0823         189 TDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLM  267 (425)
T ss_pred             cccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEE
Confidence            33456677789999998766542   22 469999999887655543 3333455789999987665 566888889999


Q ss_pred             eCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeC-CC--cEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCC
Q 042434          339 DCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLS-DK--DIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNS  414 (517)
Q Consensus       339 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d  414 (517)
                      |..++....+.... +.-..-.|+|||+.++..+. .|  .|.++|..... .........-..-.|+|||++++..+..
T Consensus       268 dl~~~~~~~Lt~~~-gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~  346 (425)
T COG0823         268 DLDGKNLPRLTNGF-GINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSS  346 (425)
T ss_pred             cCCCCcceecccCC-ccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEecc
Confidence            99987766544333 23336789999998886654 33  57777777766 3333333333378899999999888753


Q ss_pred             -Ce--EEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecC
Q 042434          415 -QE--IHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSE  459 (517)
Q Consensus       415 -~~--i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  459 (517)
                       |.  |.+.|+.++.. ...+.....    ...-.+.++|+.+...+.
T Consensus       347 ~g~~~i~~~~~~~~~~-~~~lt~~~~----~e~ps~~~ng~~i~~~s~  389 (425)
T COG0823         347 GGQWDIDKNDLASGGK-IRILTSTYL----NESPSWAPNGRMIMFSSG  389 (425)
T ss_pred             CCceeeEEeccCCCCc-EEEcccccc----CCCCCcCCCCceEEEecc
Confidence             33  66666655422 222221111    222233677776665443

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.50  E-value=6.9e-05  Score=77.07  Aligned_cols=199  Identities=18%  Similarity=0.240  Sum_probs=134.3

Q ss_pred             ccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEEC----
Q 042434          221 HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDV----  296 (517)
Q Consensus       221 h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~----  296 (517)
                      ..+.|.++.|..++.-++.+..+|.|.+-|..+.. .   .....-.+.|.+++|+||+..++..+..+++.+-+-    
T Consensus        67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~-~---eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~  142 (1265)
T KOG1920|consen   67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLE-L---EIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEP  142 (1265)
T ss_pred             CCcceEEEEEecccceEEEEecCCcEEEEcccccc-e---eeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccc
Confidence            34689999999999999999999999999875432 1   222334688999999999999999888887766432    


Q ss_pred             CC-------------------CcEEEEeCC---------------------CCCceEEEEEeCCCCeEEEee---CCCce
Q 042434          297 ET-------------------GICKHTFGD---------------------HGFIVSSCAWFPDSKRLVCGS---SDTEK  333 (517)
Q Consensus       297 ~~-------------------~~~~~~~~~---------------------~~~~v~~i~~~~~~~~l~~~~---~d~~v  333 (517)
                      -.                   |+....|.+                     ....=+++.|--||.++++..   ..|.-
T Consensus       143 i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~R  222 (1265)
T KOG1920|consen  143 IAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTR  222 (1265)
T ss_pred             hhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCce
Confidence            10                   111111211                     011224589999999999843   23333


Q ss_pred             eEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEe---CCCcEEEEECCCceE-----EeeccCCCeeEEEEcCCC
Q 042434          334 GIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVL---SDKDIRILNLGTYAE-----RVISEEHPITSLSVSVDC  405 (517)
Q Consensus       334 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~-----~~~~~~~~i~~~~~s~~~  405 (517)
                      .+.+||..+ .+........+.-.+++|-|.|..+++..   +++.|.+|.-+....     .......++..++|+.++
T Consensus       223 kirV~drEg-~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~s  301 (1265)
T KOG1920|consen  223 KIRVYDREG-ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNS  301 (1265)
T ss_pred             eEEEecccc-hhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCC
Confidence            488888773 33333333334556899999999988764   455788888665441     122233348999999999


Q ss_pred             CEEEE---EeCCCeEEEEEcCC
Q 042434          406 KNFIV---NLNSQEIHMWDVAG  424 (517)
Q Consensus       406 ~~l~~---~~~d~~i~~~d~~~  424 (517)
                      ..+++   ......|++|-+.+
T Consensus       302 diLAv~~~~~e~~~v~lwt~~N  323 (1265)
T KOG1920|consen  302 DILAVVTSNLENSLVQLWTTGN  323 (1265)
T ss_pred             CceeeeecccccceEEEEEecC
Confidence            99988   44455699998855

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.48  E-value=0.00059  Score=58.30  Aligned_cols=258  Identities=14%  Similarity=0.149  Sum_probs=131.9

Q ss_pred             CCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceE
Q 042434          234 GEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVS  313 (517)
Q Consensus       234 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  313 (517)
                      ..+++.|+..+.+.--|..+++-. ....+   ...|.+-+.- -|++++.|+..|.+.+.+..+|.....+.....--.
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~-We~il---g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~   97 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLI-WEAIL---GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKV   97 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEE-eehhh---CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhcc
Confidence            346666777777766666555321 11111   1222221111 367899999999999999999987777754433223


Q ss_pred             EEEEeCCCCeEEEeeCCCceeEEEEeCCCCee-EeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce---EEe
Q 042434          314 SCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEI-KAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA---ERV  389 (517)
Q Consensus       314 ~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~  389 (517)
                      .....+++..+.+|+.|++  .+..|...... ...+... +...+-++.|....+.++...|.+.-.......   ...
T Consensus        98 ~a~~d~~~glIycgshd~~--~yalD~~~~~cVykskcgG-~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~  174 (354)
T KOG4649|consen   98 RAQCDFDGGLIYCGSHDGN--FYALDPKTYGCVYKSKCGG-GTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWA  174 (354)
T ss_pred             ceEEcCCCceEEEecCCCc--EEEecccccceEEecccCC-ceeccceecCCCceEEEEeccceEEEEccCCCCcceehh
Confidence            3456778999999999999  88888875433 3322221 233444566644455555566655555444432   111


Q ss_pred             eccCCCeeE--EEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcE----
Q 042434          390 ISEEHPITS--LSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQI----  463 (517)
Q Consensus       390 ~~~~~~i~~--~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i----  463 (517)
                      .....++.+  ++.   +..+..++-||.+.-+|-. + ..+.++... .+.+ ..-+...|..+.+..+.++..+    
T Consensus       175 ~~~~~PiF~splcv---~~sv~i~~VdG~l~~f~~s-G-~qvwr~~t~-GpIf-~~Pc~s~Ps~q~i~~~~~~Cf~~~~p  247 (354)
T KOG4649|consen  175 ATRFGPIFASPLCV---GSSVIITTVDGVLTSFDES-G-RQVWRPATK-GPIF-MEPCESRPSCQQISLENENCFCAPLP  247 (354)
T ss_pred             hhcCCccccCceec---cceEEEEEeccEEEEEcCC-C-cEEEeecCC-Ccee-cccccCCCcceEEEEecCCeEEEecc
Confidence            112222211  111   3445556667776666632 2 222222111 1111 1111112444455555544332    


Q ss_pred             ----EEEecCCCceeEEecCCCCCeeEEEec-C--CCCcEEEEeeCCCcEEEe
Q 042434          464 ----YIWNRRNSKPIEILSGHSMTVNCVSWN-P--KRPKMLASASDDHTIRIW  509 (517)
Q Consensus       464 ----~iwd~~~~~~~~~~~~h~~~v~~v~~~-~--~~~~~l~s~~~dg~v~iw  509 (517)
                          .+|..++|...+..-..+   ...+++ |  ..++++..++.||.+.|-
T Consensus       248 ~~ghL~w~~~~g~t~~vy~~p~---l~F~~h~~~~S~~~ll~~~s~dgkv~il  297 (354)
T KOG4649|consen  248 IAGHLLWATQSGTTLHVYLSPK---LRFDLHSPGISYPKLLRRSSGDGKVMIL  297 (354)
T ss_pred             ccceEEEEecCCcEEEEEeCcc---cceeccCCCCcchhhhhhhcCCCcEEEE
Confidence                245555553333221110   011121 1  113578888899988887

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.47  E-value=1.2e-05  Score=77.21  Aligned_cols=196  Identities=18%  Similarity=0.189  Sum_probs=131.1

Q ss_pred             cccEEEeccccCcEEEEEECCCCCEEEEee---CC-CcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEE-e
Q 042434          212 TETVQILTEHKNEVWFVQFSNNGEYLASSS---SD-CSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTC-G  286 (517)
Q Consensus       212 ~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~---~d-g~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~  286 (517)
                      +...+.+..-...+..-+|+|++..++..+   .. ..+.++++.++.... +..+.++   -...+|+|||+.|+.+ .
T Consensus       182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~-i~~~~g~---~~~P~fspDG~~l~f~~~  257 (425)
T COG0823         182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPV-ILNFNGN---NGAPAFSPDGSKLAFSSS  257 (425)
T ss_pred             CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccce-eeccCCc---cCCccCCCCCCEEEEEEC
Confidence            445556666677888889999998776542   22 468899998775532 2334443   3456899999887754 4


Q ss_pred             CCC--eEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEee-CCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEcc
Q 042434          287 NAE--VLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGS-SDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTP  363 (517)
Q Consensus       287 ~dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~  363 (517)
                      .||  .|.+.|+.++...+ +....+.-+.-.|+|||+.++..+ ..|.-.|+..+.++.............. .-.|+|
T Consensus       258 rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~-~p~~Sp  335 (425)
T COG0823         258 RDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNS-NPVWSP  335 (425)
T ss_pred             CCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCc-CccCCC
Confidence            566  46666887766333 444444444778999999887664 4566679999999877655554433222 678999


Q ss_pred             CCCEEEEEeCC-Cc--EEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeC
Q 042434          364 DGENLISVLSD-KD--IRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLN  413 (517)
Q Consensus       364 ~~~~l~~~~~d-g~--i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~  413 (517)
                      ||++++..+.. |.  |.+.|+.+.. .............++.++++.+...+.
T Consensus       336 dG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~  389 (425)
T COG0823         336 DGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSG  389 (425)
T ss_pred             CCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEecc
Confidence            99998877753 43  6666766555 455555555666778888877665544

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.47  E-value=5.1e-06  Score=72.07  Aligned_cols=237  Identities=15%  Similarity=0.167  Sum_probs=136.7

Q ss_pred             CCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc-E----EEEeCCCC------------CceEEEEEeCCCC--eEEEe
Q 042434          267 QNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI-C----KHTFGDHG------------FIVSSCAWFPDSK--RLVCG  327 (517)
Q Consensus       267 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-~----~~~~~~~~------------~~v~~i~~~~~~~--~l~~~  327 (517)
                      ...|+++.|...|.+|++|...|.|.++.-+... |    ...|++|.            ..|..+.|..++.  .++..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            4678999999999999999999999999754332 1    12344442            4577888887643  67888


Q ss_pred             eCCCceeEEEEeCCCCeeEeeeCc---------CCCceEEEEEccCCCEEEEEe-CCCcEEEEECCCceEEeeccCCCee
Q 042434          328 SSDTEKGIFMCDCDGNEIKAWRGT---------RIPKVLDLAVTPDGENLISVL-SDKDIRILNLGTYAERVISEEHPIT  397 (517)
Q Consensus       328 ~~d~~v~i~~~~~~~~~~~~~~~~---------~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~i~  397 (517)
                      +.|.+  |.+|....+.++.....         ..+++++..    .-.+--.+ .|..|...   ........|...+.
T Consensus       106 tNdkt--iKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~----~l~lprls~hd~iiaa~---p~rvyaNaH~yhiN  176 (460)
T COG5170         106 TNDKT--IKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTK----ELLLPRLSEHDEIIAAK---PCRVYANAHPYHIN  176 (460)
T ss_pred             cCCce--eeeeeeecccchhhhccccccccccccCCCcCCHH----HhhcccccccceEEEec---cceeccccceeEee
Confidence            89999  55555443333222111         111111100    00000000 01111111   01112235666789


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEEcCCCCc--cceEEeCcc--cCceEEEeecCCCCC-cEEEEecCCCcEEEEecCCCc
Q 042434          398 SLSVSVDCKNFIVNLNSQEIHMWDVAGKWE--KPFKYTGHS--QNKYVIRSCFGGLDG-TFIASGSENSQIYIWNRRNSK  472 (517)
Q Consensus       398 ~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~--~~~~~~~~~--~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~  472 (517)
                      ++++..|...++++ .|=.|.+|++.-...  .+..+..|.  .-..+|++.-|+|.. +.+.-.+..|.|++-|++...
T Consensus       177 SiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~a  255 (460)
T COG5170         177 SISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSA  255 (460)
T ss_pred             eeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhh
Confidence            99999987777654 566889998854311  112222221  123346666667753 456667778999999998432


Q ss_pred             ee------E--E--------ecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434          473 PI------E--I--------LSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS  515 (517)
Q Consensus       473 ~~------~--~--------~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~  515 (517)
                      +.      .  +        +.+-...|.++.|+++| +++++-+. -+|+|||++..+
T Consensus       256 lcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ng-ryIlsRdy-ltvkiwDvnm~k  312 (460)
T COG5170         256 LCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNG-RYILSRDY-LTVKIWDVNMAK  312 (460)
T ss_pred             hccCchhhhhhccCcccchhHHHHhhhhcceEEcCCC-cEEEEecc-ceEEEEeccccc
Confidence            11      1  1        11123568899999999 56665544 589999998654

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.43  E-value=6.3e-06  Score=81.71  Aligned_cols=192  Identities=14%  Similarity=0.102  Sum_probs=132.8

Q ss_pred             CCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCce
Q 042434          233 NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIV  312 (517)
Q Consensus       233 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v  312 (517)
                      ++..++.|+-...+..+|+.+..   ..+...-..+.|+-++.  +++.+.+|...|+|.+-|..+.+.++++..|.+.|
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~---e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~si  220 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEK---ETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSI  220 (1118)
T ss_pred             CCcceeecchhhheeeeecccce---eeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccce
Confidence            34466777776778888886543   22333333444666665  57899999999999999999999999999999999


Q ss_pred             EEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEeec
Q 042434          313 SSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVIS  391 (517)
Q Consensus       313 ~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~  391 (517)
                      ..+..  .|+.|++++..+.  .+                                 .-..|..|+|||++..+ ...+.
T Consensus       221 SDfDv--~GNlLitCG~S~R--~~---------------------------------~l~~D~FvkVYDLRmmral~PI~  263 (1118)
T KOG1275|consen  221 SDFDV--QGNLLITCGYSMR--RY---------------------------------NLAMDPFVKVYDLRMMRALSPIQ  263 (1118)
T ss_pred             eeeec--cCCeEEEeecccc--cc---------------------------------cccccchhhhhhhhhhhccCCcc
Confidence            87655  5889999887754  11                                 00246678999998876 33333


Q ss_pred             cCCCeeEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCcc-ceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEe
Q 042434          392 EEHPITSLSVSVD-CKNFIVNLNSQEIHMWDVAGKWEK-PFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWN  467 (517)
Q Consensus       392 ~~~~i~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd  467 (517)
                      ......-+.|.|. ...+++++..|...+.|..+-..+ ...+.-+.... .+....++++|..++.|..+|.|.+|.
T Consensus       264 ~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s-~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  264 FPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGS-GISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             cccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCC-cceeEEecCCCceEEEecccCcEeeec
Confidence            3333455667774 456888899999999995432222 22222222222 255556689999999999999999997

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.41  E-value=0.001  Score=63.83  Aligned_cols=114  Identities=16%  Similarity=0.148  Sum_probs=83.5

Q ss_pred             eEEEEEeC-CCCeEEEe----eCCCc--eeEEEEeCCCCeeE---eeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEE
Q 042434          312 VSSCAWFP-DSKRLVCG----SSDTE--KGIFMCDCDGNEIK---AWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILN  381 (517)
Q Consensus       312 v~~i~~~~-~~~~l~~~----~~d~~--v~i~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  381 (517)
                      ..++.|+. ++..+.+.    +.+|.  +....|+...+.++   .........+.+++++|+...++.|+.||.|.+||
T Consensus       208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD  287 (545)
T PF11768_consen  208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYD  287 (545)
T ss_pred             cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence            35666765 34444443    23343  22344554443332   22233345799999999999999999999999999


Q ss_pred             CCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 042434          382 LGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK  425 (517)
Q Consensus       382 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~  425 (517)
                      ...+........-.++.++|+|+|..+++|+..|.+.+||+.-.
T Consensus       288 ~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  288 TTRGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             cCCCeeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            98887666666777899999999999999999999999998654

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.39  E-value=0.00077  Score=61.18  Aligned_cols=243  Identities=13%  Similarity=0.099  Sum_probs=138.2

Q ss_pred             EEECCCCCEEEEeeC----------CCcEEEEEecCCCeeeEEEEecc-CC----CCEEEEEECCCCCeEEEEeC--CCe
Q 042434          228 VQFSNNGEYLASSSS----------DCSAIIWKVLEDSKLTLKHTLRS-HQ----NPVSFVAWSPDDTKLLTCGN--AEV  290 (517)
Q Consensus       228 ~~~s~~~~~l~t~~~----------dg~i~iw~~~~~~~~~~~~~~~~-h~----~~v~~l~~s~~~~~l~s~~~--dg~  290 (517)
                      +..||+++.+++++.          .-.|.+||..+-.....+ .+.. |.    .....++++.|+++++....  ...
T Consensus        41 ~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI-~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S  119 (342)
T PF06433_consen   41 VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEI-EIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS  119 (342)
T ss_dssp             EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEE-EETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred             eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceE-ecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence            567899998887532          335899998654222211 2221 11    12234678889998877533  457


Q ss_pred             EEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEee----eCcCCCceEEEEEccCCC
Q 042434          291 LKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAW----RGTRIPKVLDLAVTPDGE  366 (517)
Q Consensus       291 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~  366 (517)
                      |.|-|+..++.+..+....  +..+--++ .+.|.+-+.||.+.-..+|..|+.....    .......+..-.+...+.
T Consensus       120 VtVVDl~~~kvv~ei~~PG--C~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~  196 (342)
T PF06433_consen  120 VTVVDLAAKKVVGEIDTPG--CWLIYPSG-NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGG  196 (342)
T ss_dssp             EEEEETTTTEEEEEEEGTS--EEEEEEEE-TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTT
T ss_pred             EEEEECCCCceeeeecCCC--EEEEEecC-CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCC
Confidence            9999999998888774332  12222222 3468888999996666667666654322    111211233445555666


Q ss_pred             EEEEEeCCCcEEEEECCCceEEeec--------------cCCCeeEEEEcCCCCEEEEEeCC--------C--eEEEEEc
Q 042434          367 NLISVLSDKDIRILNLGTYAERVIS--------------EEHPITSLSVSVDCKNFIVNLNS--------Q--EIHMWDV  422 (517)
Q Consensus       367 ~l~~~~~dg~i~i~d~~~~~~~~~~--------------~~~~i~~~~~s~~~~~l~~~~~d--------~--~i~~~d~  422 (517)
                      .++..+.+|.|+-.|+.........              ..+...-+++++..+.|++-...        +  .|.++|+
T Consensus       197 ~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~  276 (342)
T PF06433_consen  197 RLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDL  276 (342)
T ss_dssp             EEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEET
T ss_pred             eEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEEC
Confidence            6777889999999988765511110              11234567888766665554321        1  4888888


Q ss_pred             CCCCccceEEeCcccCceEEEeecCCCCC-cEEEEe-cCCCcEEEEecCCCceeEEecC
Q 042434          423 AGKWEKPFKYTGHSQNKYVIRSCFGGLDG-TFIASG-SENSQIYIWNRRNSKPIEILSG  479 (517)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~-~~dg~i~iwd~~~~~~~~~~~~  479 (517)
                      .++ +.+.++.....    +.++..+.+. .+|++. ..++.+.+||..+|+++.++..
T Consensus       277 ~t~-krv~Ri~l~~~----~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  277 KTH-KRVARIPLEHP----IDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             TTT-EEEEEEEEEEE----ESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             CCC-eEEEEEeCCCc----cceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence            887 55555553221    2122223443 355544 5679999999999999998874

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.38  E-value=5e-05  Score=72.21  Aligned_cols=223  Identities=16%  Similarity=0.210  Sum_probs=126.0

Q ss_pred             CCCCCeEEEE---------eCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeE
Q 042434          276 SPDDTKLLTC---------GNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIK  346 (517)
Q Consensus       276 s~~~~~l~s~---------~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~  346 (517)
                      |||+++++..         +..+.+.+||+++++..... .....+....|+|+|+.++..... .  +|+.+..+....
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~-~~~~~~~~~~~sP~g~~~~~v~~~-n--ly~~~~~~~~~~   76 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLT-PPPPKLQDAKWSPDGKYIAFVRDN-N--LYLRDLATGQET   76 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS--EETTBSEEEE-SSSTEEEEEETT-E--EEEESSTTSEEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECc-CCccccccceeecCCCeeEEEecC-c--eEEEECCCCCeE
Confidence            5777777663         23467899999998765443 336678889999999999988754 4  999987665554


Q ss_pred             eeeCcC-----------------CCceEEEEEccCCCEEEEEeCCC----------------------------------
Q 042434          347 AWRGTR-----------------IPKVLDLAVTPDGENLISVLSDK----------------------------------  375 (517)
Q Consensus       347 ~~~~~~-----------------~~~i~~~~~~~~~~~l~~~~~dg----------------------------------  375 (517)
                      .+....                 .+.-..+.||||+++|+....|.                                  
T Consensus        77 ~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np  156 (353)
T PF00930_consen   77 QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNP  156 (353)
T ss_dssp             ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---
T ss_pred             EeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCC
Confidence            443322                 12335688999999888664431                                  


Q ss_pred             --cEEEEECCCceEEe-------eccCCCeeEEEEcCCCCEEEEEeC--CC---eEEEEEcCCCCccceEEeCcccCce-
Q 042434          376 --DIRILNLGTYAERV-------ISEEHPITSLSVSVDCKNFIVNLN--SQ---EIHMWDVAGKWEKPFKYTGHSQNKY-  440 (517)
Q Consensus       376 --~i~i~d~~~~~~~~-------~~~~~~i~~~~~s~~~~~l~~~~~--d~---~i~~~d~~~~~~~~~~~~~~~~~~~-  440 (517)
                        .+.++|+.+++...       .....-+..+.|.++++.+++...  +.   .+.++|..++............-.. 
T Consensus       157 ~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~  236 (353)
T PF00930_consen  157 RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDV  236 (353)
T ss_dssp             EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSS
T ss_pred             ceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceee
Confidence              24445555544211       122335778899999884444332  22   4666777654222222111111000 


Q ss_pred             EEEeecC-CCCCcEEEEecCCC--cEEEEecCCCceeEEecCCCCCeeE-EEecCCCCcEEEEeeCC
Q 042434          441 VIRSCFG-GLDGTFIASGSENS--QIYIWNRRNSKPIEILSGHSMTVNC-VSWNPKRPKMLASASDD  503 (517)
Q Consensus       441 ~i~~~~~-s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~h~~~v~~-v~~~~~~~~~l~s~~~d  503 (517)
                      .-...++ ..++.++.....||  .|++++...+.. ..+....-.|+. +.|++++..+++++..+
T Consensus       237 ~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~-~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~  302 (353)
T PF00930_consen  237 YDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP-RQLTSGDWEVTSILGWDEDNNRIYFTANGD  302 (353)
T ss_dssp             SSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE-EESS-SSS-EEEEEEEECTSSEEEEEESSG
T ss_pred             ecccccccCCCCEEEEEEEcCCCcEEEEEcccccce-eccccCceeecccceEcCCCCEEEEEecCC
Confidence            0011122 34555666666777  466667665553 355545566755 67888875666676653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.38  E-value=0.00021  Score=70.01  Aligned_cols=182  Identities=15%  Similarity=0.047  Sum_probs=114.2

Q ss_pred             ECCCCCeEEEE-eCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCce--eEEEEeCCCCeeEeeeCc
Q 042434          275 WSPDDTKLLTC-GNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEK--GIFMCDCDGNEIKAWRGT  351 (517)
Q Consensus       275 ~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v--~i~~~~~~~~~~~~~~~~  351 (517)
                      ++|||+.+... -..+.+.+.|.++.+...++.-.. ....++++|+|+++++.+.+...  .+...+....        
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~--------  270 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAER--------  270 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccC--------
Confidence            45566555332 234577888888877766654322 44678899999999888643321  1222222111        


Q ss_pred             CCCceEEE------EEccCCCEEEEEeCCCcEEEEECCC-----ce-EEeeccCCCeeEEEEcCCCCEEEEEeC-CCeEE
Q 042434          352 RIPKVLDL------AVTPDGENLISVLSDKDIRILNLGT-----YA-ERVISEEHPITSLSVSVDCKNFIVNLN-SQEIH  418 (517)
Q Consensus       352 ~~~~i~~~------~~~~~~~~l~~~~~dg~i~i~d~~~-----~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~-d~~i~  418 (517)
                        ..+..+      .+.++|++...  .++.|.+.|.++     .. ...+........+.++|||+++++++. ++++.
T Consensus       271 --d~~vvfni~~iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVS  346 (635)
T PRK02888        271 --DWVVVFNIARIEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVT  346 (635)
T ss_pred             --ceEEEEchHHHHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEE
Confidence              111111      33457776665  367899999998     33 566677888899999999999888776 88999


Q ss_pred             EEEcCCCCccc-------eEEeCccc-CceEEEeecCCCCCcEEEEecCCCcEEEEecCC
Q 042434          419 MWDVAGKWEKP-------FKYTGHSQ-NKYVIRSCFGGLDGTFIASGSENSQIYIWNRRN  470 (517)
Q Consensus       419 ~~d~~~~~~~~-------~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~  470 (517)
                      ++|+.+.....       ..+.+... +...+.. .|.++|+...+-.-|..|..||+.+
T Consensus       347 VIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHT-aFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        347 VIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHT-AFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             EEEChhhhhhhhccCCccceEEEeeccCCCcceE-EECCCCCEEEeEeecceeEEEehHH
Confidence            99997642100       01111111 1111222 3378888888888899999999875

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.36  E-value=0.00017  Score=70.72  Aligned_cols=224  Identities=9%  Similarity=0.029  Sum_probs=122.7

Q ss_pred             CCCeEEEEeC-CCeEEEEECCCCcEEEEeC-CCCCceEEEEEe--CCCCeEEEeeC-------CCc---------eeEEE
Q 042434          278 DDTKLLTCGN-AEVLKLWDVETGICKHTFG-DHGFIVSSCAWF--PDSKRLVCGSS-------DTE---------KGIFM  337 (517)
Q Consensus       278 ~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~--~~~~~l~~~~~-------d~~---------v~i~~  337 (517)
                      ||++|+.-.. +..|..-++...++-+.+. .....+..+.+-  |+..++++++.       ||.         -.+..
T Consensus       140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSv  219 (635)
T PRK02888        140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTA  219 (635)
T ss_pred             ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEE
Confidence            6778887654 4566666666555444332 122233333332  44444444332       222         01334


Q ss_pred             EeCCCCee-EeeeCcCCCceEEEEEccCCCEEEEEeCCC----cEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEe
Q 042434          338 CDCDGNEI-KAWRGTRIPKVLDLAVTPDGENLISVLSDK----DIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNL  412 (517)
Q Consensus       338 ~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  412 (517)
                      +|..+..+ ......  +....+.++++|+++++.+.+.    ++...+..............  .-.+.++|++..+  
T Consensus       220 ID~etmeV~~qV~Vd--gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~--iea~vkdGK~~~V--  293 (635)
T PRK02888        220 VDAETMEVAWQVMVD--GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR--IEEAVKAGKFKTI--  293 (635)
T ss_pred             EECccceEEEEEEeC--CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH--HHHhhhCCCEEEE--
Confidence            44443222 111111  2456788899999999888432    23333222211000000000  0133457777666  


Q ss_pred             CCCeEEEEEcCC----CCccceEEeCcccCceEEEeecCCCCCcEEEEecC-CCcEEEEecCCCce------------eE
Q 042434          413 NSQEIHMWDVAG----KWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSE-NSQIYIWNRRNSKP------------IE  475 (517)
Q Consensus       413 ~d~~i~~~d~~~----~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~------------~~  475 (517)
                      .++.|.++|.++    .......+... ..   ..-+.++|||+++++++. +.++.|.|+.+.+.            +.
T Consensus       294 ~gn~V~VID~~t~~~~~~~v~~yIPVG-Ks---PHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vva  369 (635)
T PRK02888        294 GGSKVPVVDGRKAANAGSALTRYVPVP-KN---PHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVA  369 (635)
T ss_pred             CCCEEEEEECCccccCCcceEEEEECC-CC---ccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEE
Confidence            367899999876    22333332221 11   223334899998877665 78999999987552            33


Q ss_pred             EecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434          476 ILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ  513 (517)
Q Consensus       476 ~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~  513 (517)
                      +..- ...-...+|.++| +.+.|.--|..|..|++..
T Consensus       370 evev-GlGPLHTaFDg~G-~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        370 EPEL-GLGPLHTAFDGRG-NAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             eecc-CCCcceEEECCCC-CEEEeEeecceeEEEehHH
Confidence            3332 2334577899998 7888999999999999875

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.35  E-value=0.0017  Score=58.99  Aligned_cols=262  Identities=11%  Similarity=0.121  Sum_probs=148.8

Q ss_pred             CcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeC----------CCeEEEEECCCCcEEEEeCCCC----
Q 042434          244 CSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGN----------AEVLKLWDVETGICKHTFGDHG----  309 (517)
Q Consensus       244 g~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~----  309 (517)
                      +.+.|+|.++++   ....+.  .+-.-.+..+||++.+++++.          .-.|.+||..+-.....+.-..    
T Consensus        17 ~rv~viD~d~~k---~lGmi~--~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~   91 (342)
T PF06433_consen   17 SRVYVIDADSGK---LLGMID--TGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA   91 (342)
T ss_dssp             EEEEEEETTTTE---EEEEEE--EESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-
T ss_pred             ceEEEEECCCCc---EEEEee--cccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh
Confidence            478888876553   233332  122334678999999887532          3379999999987776543221    


Q ss_pred             ---CceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCC-c
Q 042434          310 ---FIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGT-Y  385 (517)
Q Consensus       310 ---~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~  385 (517)
                         ......+++.|++++++....-.-.|-+.|+..+.+.......  .+..+ +-...+.+.+.+.||.+.-..+.. +
T Consensus        92 ~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--GC~~i-yP~~~~~F~~lC~DGsl~~v~Ld~~G  168 (342)
T PF06433_consen   92 QVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--GCWLI-YPSGNRGFSMLCGDGSLLTVTLDADG  168 (342)
T ss_dssp             -BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--SEEEE-EEEETTEEEEEETTSCEEEEEETSTS
T ss_pred             eecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--CEEEE-EecCCCceEEEecCCceEEEEECCCC
Confidence               1122367888999888766555445888888876654322221  11111 111224678888999998888863 3


Q ss_pred             eEE-----ee-ccCCC-eeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccc-eEEeCc---------ccCceEEEeecCC
Q 042434          386 AER-----VI-SEEHP-ITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKP-FKYTGH---------SQNKYVIRSCFGG  448 (517)
Q Consensus       386 ~~~-----~~-~~~~~-i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~---------~~~~~~i~~~~~s  448 (517)
                      +..     .+ ....+ ...-++...+..++..+.+|.|+-.|+....... ..+.-.         ..+.+.+  ++++
T Consensus       169 k~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~--~A~~  246 (342)
T PF06433_consen  169 KEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQL--IAYH  246 (342)
T ss_dssp             SEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS---EEEE
T ss_pred             CEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceee--eeec
Confidence            311     11 11112 2233445556667778889999998887652111 111110         0111111  1223


Q ss_pred             CCCcEEEEec---CCC-------cEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEe-eCCCcEEEeCCCCCCC
Q 042434          449 LDGTFIASGS---ENS-------QIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASA-SDDHTIRIWGPCQSSE  516 (517)
Q Consensus       449 ~~~~~l~~~~---~dg-------~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~-~~dg~v~iw~~~~~~~  516 (517)
                      +..+.|++.-   .+|       .|.++|+.+++.+..+.. ..++.+|..+.+..-+|++. ..++.+.+||..+|+.
T Consensus       247 ~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~  324 (342)
T PF06433_consen  247 AASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKL  324 (342)
T ss_dssp             TTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--E
T ss_pred             cccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcE
Confidence            3333333321   111       588889999999999874 35688999998774466554 4689999999999875

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG0396 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.31  E-value=6.1e-06  Score=73.51  Aligned_cols=121  Identities=17%  Similarity=0.167  Sum_probs=93.5

Q ss_pred             CchHHHHHHHHHHHhhcChHHHHHHHhhhcCee-e-cC---hhHHHHHHHHHcCChHHHHHHhhcccCCChhhhcccchh
Q 042434           14 IKKYEFVRVVVQCLYSLGYQKSASCLESESGVS-Y-KS---KGFERLEVQILNGDWDGCIDTLIAITDLNDERRASVLFP   88 (517)
Q Consensus        14 ~~~~~~~~li~q~L~~~g~~~s~~~l~~Esg~~-~-~~---~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~   88 (517)
                      -.+.-+.|+|..||.-+||-+||..|-++|.+. + +.   ..+..+++++++|+...++.--+.-.-.-......+-|.
T Consensus       113 w~r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~LkK~~S~lEf~  192 (389)
T KOG0396|consen  113 WPRNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELKKEESSLEFQ  192 (389)
T ss_pred             hHHHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccchhhhH
Confidence            357788999999999999999999999999874 1 11   345678889999998877654442211111223456788


Q ss_pred             hhhhhhhHhhhcCChhHHHHHHHhhcccCCC-ChhHHhhhhhccccc
Q 042434           89 VFKQCFLEYLNRGDDSLALNVLRKRVSSLQM-SKDTIHNLASSMLCL  134 (517)
Q Consensus        89 ~~~~~~~el~~~~~~~~a~~~lr~~~~~~~~-~~~~~~~l~~~~~~~  134 (517)
                      +..|+|.||++.+++.+|+.+.++.+.|... ....++....++.++
T Consensus       193 lRlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~  239 (389)
T KOG0396|consen  193 LRLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFP  239 (389)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCc
Confidence            9999999999999999999999999998776 556777777777776

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.31  E-value=0.0013  Score=64.27  Aligned_cols=243  Identities=15%  Similarity=0.145  Sum_probs=136.0

Q ss_pred             EEEEEECCCCCeEEEE-eCCC----eEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCC---------ceeE
Q 042434          270 VSFVAWSPDDTKLLTC-GNAE----VLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDT---------EKGI  335 (517)
Q Consensus       270 v~~l~~s~~~~~l~s~-~~dg----~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~---------~v~i  335 (517)
                      +....++|||+++|.+ +..|    .++++|+++|+.+...- .......+.|.++++.|+....+.         .-.|
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i-~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v  204 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI-ENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV  204 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE-EEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc-cccccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence            3467899999998865 3334    69999999997765321 111223499999998887776554         4458


Q ss_pred             EEEeCCCCee---EeeeCcCCCc-eEEEEEccCCCEEEEEeCC----CcEEEEECCCc-----e-EEeeccCCCeeEEEE
Q 042434          336 FMCDCDGNEI---KAWRGTRIPK-VLDLAVTPDGENLISVLSD----KDIRILNLGTY-----A-ERVISEEHPITSLSV  401 (517)
Q Consensus       336 ~~~~~~~~~~---~~~~~~~~~~-i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~-----~-~~~~~~~~~i~~~~~  401 (517)
                      +.+...+...   ..+....... ...+..++|+++++.....    ..+.+.|+...     . .........+....-
T Consensus       205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~  284 (414)
T PF02897_consen  205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD  284 (414)
T ss_dssp             EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred             EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence            8888875432   3333433334 6788999999987764432    35888898874     2 233333333333222


Q ss_pred             cCCCCEEEEEeC---CCeEEEEEcCCCCc--cceEEeCcccCceEEEeecCCCCCcEEEEecCCC--cEEEEecCCCcee
Q 042434          402 SVDCKNFIVNLN---SQEIHMWDVAGKWE--KPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENS--QIYIWNRRNSKPI  474 (517)
Q Consensus       402 s~~~~~l~~~~~---d~~i~~~d~~~~~~--~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~  474 (517)
                      +..+.+++....   .+.|...++.....  ....+..+..... +..+.. -.+.+++....++  .|+++++..+...
T Consensus       285 ~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~-l~~~~~-~~~~Lvl~~~~~~~~~l~v~~~~~~~~~  362 (414)
T PF02897_consen  285 HHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVS-LEDVSL-FKDYLVLSYRENGSSRLRVYDLDDGKES  362 (414)
T ss_dssp             EETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEE-EEEEEE-ETTEEEEEEEETTEEEEEEEETT-TEEE
T ss_pred             ccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCcee-EEEEEE-ECCEEEEEEEECCccEEEEEECCCCcEE
Confidence            223333333322   35677777766532  1113333333222 222221 1344555555555  6889998844444


Q ss_pred             EEecC-CCCCeeEEEecCCCCcEEEEeeC---CCcEEEeCCCCCC
Q 042434          475 EILSG-HSMTVNCVSWNPKRPKMLASASD---DHTIRIWGPCQSS  515 (517)
Q Consensus       475 ~~~~~-h~~~v~~v~~~~~~~~~l~s~~~---dg~v~iw~~~~~~  515 (517)
                      ..+.. -.+.|..+...++++.+.++.+.   -+++.-||+.+++
T Consensus       363 ~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~  407 (414)
T PF02897_consen  363 REIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE  407 (414)
T ss_dssp             EEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred             eeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence            44433 34556777777777666666554   3578888888775

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.31  E-value=0.00096  Score=66.39  Aligned_cols=264  Identities=13%  Similarity=0.085  Sum_probs=145.5

Q ss_pred             CCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCC------CEE--EEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEe
Q 042434          234 GEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQN------PVS--FVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTF  305 (517)
Q Consensus       234 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~------~v~--~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  305 (517)
                      +..++.++.++.+.-.|..+++..   -.+.....      .+.  .+... ++..++.++.+|.|..+|.++|+.+..+
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~---W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~  136 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVL---WRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKF  136 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhh---ceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeee
Confidence            345666777888888888766432   22211111      010  01111 2267888889999999999999998877


Q ss_pred             CCCCCc-----eE-EEEEeCCCCeEEEeeC---------CCceeEEEEeCCC-CeeEeeeCcCC----------------
Q 042434          306 GDHGFI-----VS-SCAWFPDSKRLVCGSS---------DTEKGIFMCDCDG-NEIKAWRGTRI----------------  353 (517)
Q Consensus       306 ~~~~~~-----v~-~i~~~~~~~~l~~~~~---------d~~v~i~~~~~~~-~~~~~~~~~~~----------------  353 (517)
                      ......     +. +..+.  +..++.++.         ++.  ++-+|..+ +.+-.......                
T Consensus       137 ~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~--v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~  212 (488)
T cd00216         137 GNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGA--LRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWG  212 (488)
T ss_pred             cCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcE--EEEEECCCCceeeEeeccCCCcCCCCCCCCCcceec
Confidence            543221     11 11222  244555543         444  77777764 33322221110                


Q ss_pred             ---Cce-EEEEEccCCCEEEEEeCCC------------------cEEEEECCCceEEee-ccC-CCe------eEEEEc-
Q 042434          354 ---PKV-LDLAVTPDGENLISVLSDK------------------DIRILNLGTYAERVI-SEE-HPI------TSLSVS-  402 (517)
Q Consensus       354 ---~~i-~~~~~~~~~~~l~~~~~dg------------------~i~i~d~~~~~~~~~-~~~-~~i------~~~~~s-  402 (517)
                         +.+ ....+.+.+..+++++.++                  .+.-+|..+++..-. ... ...      ....+. 
T Consensus       213 ~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~  292 (488)
T cd00216         213 PGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLAD  292 (488)
T ss_pred             CCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEe
Confidence               001 1234555567788887665                  688899988883222 111 100      011111 


Q ss_pred             ---CCCC---EEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEe------------------c
Q 042434          403 ---VDCK---NFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASG------------------S  458 (517)
Q Consensus       403 ---~~~~---~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~------------------~  458 (517)
                         -++.   .+++++.+|.+..+|..++ +..........      ....+|  ..++.+                  .
T Consensus       293 ~~~~~g~~~~~V~~g~~~G~l~ald~~tG-~~~W~~~~~~~------~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~  363 (488)
T cd00216         293 IKPKDGKPVPAIVHAPKNGFFYVLDRTTG-KLISARPEVEQ------PMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKP  363 (488)
T ss_pred             ccccCCCeeEEEEEECCCceEEEEECCCC-cEeeEeEeecc------ccccCC--ceEEEccccccccCcccccCCCCCC
Confidence               1333   5778888999999999887 44433321100      011123  223222                  2


Q ss_pred             CCCcEEEEecCCCceeEEecCCC--------CCe--eEEEecCCCCcEEEEeeCCCcEEEeCCCCCCCC
Q 042434          459 ENSQIYIWNRRNSKPIEILSGHS--------MTV--NCVSWNPKRPKMLASASDDHTIRIWGPCQSSEV  517 (517)
Q Consensus       459 ~dg~i~iwd~~~~~~~~~~~~h~--------~~v--~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~v  517 (517)
                      .+|.+.-.|+.+|+.+-......        .+.  ..++.  .+ .+++.++.||.|+.+|..+|+++
T Consensus       364 ~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g-~~v~~g~~dG~l~ald~~tG~~l  429 (488)
T cd00216         364 GKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AG-NLVFAGAADGYFRAFDATTGKEL  429 (488)
T ss_pred             CceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cC-CeEEEECCCCeEEEEECCCCcee
Confidence            46788889999998777665321        111  12222  23 46888889999999999998763

The alignment model contains an 8-bladed beta-propeller.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.29  E-value=0.003  Score=60.61  Aligned_cols=261  Identities=13%  Similarity=0.089  Sum_probs=162.8

Q ss_pred             cEEEEEECCCCCEEEEee-CCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEE-EEeCCCeEEEEECCCCcE
Q 042434          224 EVWFVQFSNNGEYLASSS-SDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLL-TCGNAEVLKLWDVETGIC  301 (517)
Q Consensus       224 ~v~~~~~s~~~~~l~t~~-~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~~  301 (517)
                      ....+...|++..+.... ....+...+.. ..  ............-..++.++.++.+. +...++.|.+.|..+.+.
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n--~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~  108 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SN--TVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV  108 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccc-cc--eeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccce
Confidence            455677888885444433 22244444432 11  11111111113445778888887554 445568999999888777


Q ss_pred             EEEeCCCCCceEEEEEeCCCCeEEEeeCC-CceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEe-CCCcEEE
Q 042434          302 KHTFGDHGFIVSSCAWFPDSKRLVCGSSD-TEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVL-SDKDIRI  379 (517)
Q Consensus       302 ~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i  379 (517)
                      ........ ....++++|+++.+.++... +.-.+...|..+..+.........+ ..++++|+|+.+++.. .++.|.+
T Consensus       109 ~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~v  186 (381)
T COG3391         109 LGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSV  186 (381)
T ss_pred             eeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEE
Confidence            76663322 66789999999888877664 2334888888866554442222223 8899999999766665 7889999


Q ss_pred             EECCCceEEe------eccCCCeeEEEEcCCCCEEEEEeCC---CeEEEEEcCCCCccceEEeCcccCceEEEeecCCCC
Q 042434          380 LNLGTYAERV------ISEEHPITSLSVSVDCKNFIVNLNS---QEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLD  450 (517)
Q Consensus       380 ~d~~~~~~~~------~~~~~~i~~~~~s~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  450 (517)
                      +|........      .........+.++|+|.++.+....   +.+...|.................   ......+|+
T Consensus       187 i~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~---~~~v~~~p~  263 (381)
T COG3391         187 IDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGA---PRGVAVDPA  263 (381)
T ss_pred             EeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCC---CCceeECCC
Confidence            9977766442      3344556789999999977766554   588888887652222212211111   112233799


Q ss_pred             CcEEEEecC-CCcEEEEecCCCceeEEecCCC---CCeeEEEecCC
Q 042434          451 GTFIASGSE-NSQIYIWNRRNSKPIEILSGHS---MTVNCVSWNPK  492 (517)
Q Consensus       451 ~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~h~---~~v~~v~~~~~  492 (517)
                      |.++.+... .+.+.+-|..+...........   ..+..+++.+.
T Consensus       264 g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~  309 (381)
T COG3391         264 GKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL  309 (381)
T ss_pred             CCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence            999888844 4889999998887777655332   23455555543

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.29  E-value=3.2e-05  Score=73.75  Aligned_cols=119  Identities=24%  Similarity=0.289  Sum_probs=83.1

Q ss_pred             CcEEEEEECC-CCCEEEEe----eCCCcE----EEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEE
Q 042434          223 NEVWFVQFSN-NGEYLASS----SSDCSA----IIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKL  293 (517)
Q Consensus       223 ~~v~~~~~s~-~~~~l~t~----~~dg~i----~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i  293 (517)
                      ....++.||. +...+.|.    +.+|.+    .+|++..++-.....+--.....|.|++++|+...++.|+.||+|.+
T Consensus       206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiL  285 (545)
T PF11768_consen  206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIIL  285 (545)
T ss_pred             CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEE
Confidence            3446788887 44445443    334543    45666433211122222356789999999999999999999999999


Q ss_pred             EECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCee
Q 042434          294 WDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEI  345 (517)
Q Consensus       294 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~  345 (517)
                      ||...+...  +....-.++.++|+|+|..+++|+..|.  +..||..-.++
T Consensus       286 yD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGe--lQ~FD~ALspi  333 (545)
T PF11768_consen  286 YDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGE--LQCFDMALSPI  333 (545)
T ss_pred             EEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCce--EEEEEeecCcc
Confidence            998766433  3344566789999999999999999999  77777654333

>smart00667 LisH Lissencephaly type-1-like homology motif

Probab=98.28  E-value=1.2e-06  Score=51.14  Aligned_cols=32  Identities=34%  Similarity=0.634  Sum_probs=29.5

Q ss_pred             chHHHHHHHHHHHhhcChHHHHHHHhhhcCee
Q 042434           15 KKYEFVRVVVQCLYSLGYQKSASCLESESGVS   46 (517)
Q Consensus        15 ~~~~~~~li~q~L~~~g~~~s~~~l~~Esg~~   46 (517)
                      .+.++.++|+|||..+||.+|+++|++|+|+.
T Consensus         2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~   33 (34)
T smart00667        2 SRSELNRLILEYLLRNGYEETAETLQKESGLS   33 (34)
T ss_pred             cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence            46789999999999999999999999999863

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.27  E-value=3e-05  Score=76.42  Aligned_cols=227  Identities=13%  Similarity=0.149  Sum_probs=137.0

Q ss_pred             EEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCC-CcE--
Q 042434          225 VWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVET-GIC--  301 (517)
Q Consensus       225 v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~-~~~--  301 (517)
                      +++++|+|..-.|+.|-.-|.+.+|...+.   +.......|+.+|..+.||++|..++++..-|.+.+|...- |+.  
T Consensus        62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~---e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~  138 (1416)
T KOG3617|consen   62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTT---ETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQT  138 (1416)
T ss_pred             hhhhccChHHHHHhhccccceeEEEecCCc---eeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeecccccc
Confidence            456999999999999999999999998544   33344566999999999999999999999999999997652 110  


Q ss_pred             ---------------EEEeCC---------------CCCceE-EEEE-------------eCCCCeEEEeeCCCceeEEE
Q 042434          302 ---------------KHTFGD---------------HGFIVS-SCAW-------------FPDSKRLVCGSSDTEKGIFM  337 (517)
Q Consensus       302 ---------------~~~~~~---------------~~~~v~-~i~~-------------~~~~~~l~~~~~d~~v~i~~  337 (517)
                                     ...+..               ....+- -.-|             .|+|..|+.++.+|+  |+.
T Consensus       139 ~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~Gt--Vyy  216 (1416)
T KOG3617|consen  139 SNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGT--VYY  216 (1416)
T ss_pred             chhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCCcEEEEEcCCce--EEE
Confidence                           001100               000000 0011             356778888999998  888


Q ss_pred             EeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeC------------------------------CCcEEEEEC----C
Q 042434          338 CDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLS------------------------------DKDIRILNL----G  383 (517)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------------------------------dg~i~i~d~----~  383 (517)
                      .|..+.+.........   ..+-|.+...-+++...                              .|.|.+=..    +
T Consensus       217 vdq~g~~~~V~k~dS~---vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr  293 (1416)
T KOG3617|consen  217 VDQNGRQRTVHKLDSE---VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLR  293 (1416)
T ss_pred             EcCCCcEEEEEEccch---HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCcccccccccccc
Confidence            8877766554433221   11111111111111111                              111111110    0


Q ss_pred             CceEEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC------CccceEEeCcccCceEEEeecCCCCCcEEEEe
Q 042434          384 TYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK------WEKPFKYTGHSQNKYVIRSCFGGLDGTFIASG  457 (517)
Q Consensus       384 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~------~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  457 (517)
                      .....-...+..+.+++++..+..+..|...|.+.+|--...      ......+.+.......|+.+.|+|-.+.++.-
T Consensus       294 ~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn  373 (1416)
T KOG3617|consen  294 KSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVN  373 (1416)
T ss_pred             CCcchhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhhh
Confidence            001122234557899999999999999999999999964221      12233444555545567777777765555544


Q ss_pred             cC
Q 042434          458 SE  459 (517)
Q Consensus       458 ~~  459 (517)
                      +.
T Consensus       374 ~~  375 (1416)
T KOG3617|consen  374 TE  375 (1416)
T ss_pred             hh
Confidence            43

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.27  E-value=0.0012  Score=58.34  Aligned_cols=201  Identities=12%  Similarity=0.141  Sum_probs=114.9

Q ss_pred             EeCCCCCceEEEEEeCCCCeEEE-eeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEEC
Q 042434          304 TFGDHGFIVSSCAWFPDSKRLVC-GSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL  382 (517)
Q Consensus       304 ~~~~~~~~v~~i~~~~~~~~l~~-~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  382 (517)
                      .+.+-...+..++|.|+.+.|++ ....+.  |+.++..|+.++.+.....+....+++..++.++++.-.++.+.++++
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~--i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~   93 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGE--IYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI   93 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTE--EEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCE--EEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence            44455566999999998665554 455555  889999988888877666668899999988877777767899999988


Q ss_pred             CCce----E---E--ee----ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCC--CCccceE--EeCcc---cCceEE
Q 042434          383 GTYA----E---R--VI----SEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAG--KWEKPFK--YTGHS---QNKYVI  442 (517)
Q Consensus       383 ~~~~----~---~--~~----~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~--~~~~~~~--~~~~~---~~~~~i  442 (517)
                      ....    .   .  ..    ..+..+..++|+|.++.++++-...-..+|.+..  .......  .....   .....+
T Consensus        94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  173 (248)
T PF06977_consen   94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL  173 (248)
T ss_dssp             ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred             eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence            3321    0   1  11    1334589999999988888887776667777654  1111111  11111   111123


Q ss_pred             EeecCCC-CCcEEEEecCCCcEEEEecCCCceeEEecCCC---------CCeeEEEecCCCCcEEEEeeCCCcEEEe
Q 042434          443 RSCFGGL-DGTFIASGSENSQIYIWNRRNSKPIEILSGHS---------MTVNCVSWNPKRPKMLASASDDHTIRIW  509 (517)
Q Consensus       443 ~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~---------~~v~~v~~~~~~~~~l~s~~~dg~v~iw  509 (517)
                      ..+.++| .|.+++....+..|..+| .+|+++..+.-..         ...-.|+|.++| .+ ...+.-+..+++
T Consensus       174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G-~L-YIvsEpNlfy~f  247 (248)
T PF06977_consen  174 SGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDG-NL-YIVSEPNLFYRF  247 (248)
T ss_dssp             -EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT---E-EEEETTTEEEEE
T ss_pred             cceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCC-CE-EEEcCCceEEEe
Confidence            3333344 567778888888999999 6688776654222         246789999999 44 444565555544

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.25  E-value=0.0037  Score=57.31  Aligned_cols=228  Identities=15%  Similarity=0.129  Sum_probs=128.3

Q ss_pred             CCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEe------
Q 042434          232 NNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTF------  305 (517)
Q Consensus       232 ~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~------  305 (517)
                      ..++.|+.|+.+| +.+++........  ...  +...|..+...|+-+.+++-+ |+.+.++++..-......      
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~--~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~   78 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPT--RIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP   78 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccce--eEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccc
Confidence            3577899999998 8899883222221  221  233499999999877777765 599999998754433211      


Q ss_pred             --------CCCCCceEEEE--EeCCCCeEEEeeCCCceeEEEEeCCC----CeeEeeeCcCCCceEEEEEccCCCEEEEE
Q 042434          306 --------GDHGFIVSSCA--WFPDSKRLVCGSSDTEKGIFMCDCDG----NEIKAWRGTRIPKVLDLAVTPDGENLISV  371 (517)
Q Consensus       306 --------~~~~~~v~~i~--~~~~~~~l~~~~~d~~v~i~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  371 (517)
                              ......+...+  -...+...++......+.++.|....    ...+.+...  ..+.+++|.  ++.++.|
T Consensus        79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp--~~~~~i~~~--~~~i~v~  154 (275)
T PF00780_consen   79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP--DPPSSIAFL--GNKICVG  154 (275)
T ss_pred             ccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC--CCcEEEEEe--CCEEEEE
Confidence                    01122333333  12234444445555577788888742    244444444  378888888  5577777


Q ss_pred             eCCCcEEEEECCCce-EEeecc-------------CCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCccc
Q 042434          372 LSDKDIRILNLGTYA-ERVISE-------------EHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQ  437 (517)
Q Consensus       372 ~~dg~i~i~d~~~~~-~~~~~~-------------~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~  437 (517)
                      ..++ ..+.|+.++. ......             ..++..+.+. ++.++++ . +..-.+.|..+.......+.-...
T Consensus       155 ~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~-~-~~~g~fv~~~G~~~r~~~i~W~~~  230 (275)
T PF00780_consen  155 TSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLC-Y-DNIGVFVNKNGEPSRKSTIQWSSA  230 (275)
T ss_pred             eCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEE-e-cceEEEEcCCCCcCcccEEEcCCc
Confidence            6544 8888988665 222211             1123333333 3444443 2 334445555443222111211111


Q ss_pred             CceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCC
Q 042434          438 NKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGH  480 (517)
Q Consensus       438 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h  480 (517)
                      .   ....+   ...||++.+.++ |.||++.++++++++...
T Consensus       231 p---~~~~~---~~pyli~~~~~~-iEV~~~~~~~lvQ~i~~~  266 (275)
T PF00780_consen  231 P---QSVAY---SSPYLIAFSSNS-IEVRSLETGELVQTIPLP  266 (275)
T ss_pred             h---hEEEE---ECCEEEEECCCE-EEEEECcCCcEEEEEECC
Confidence            1   11111   234777766654 999999999999988754

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.24  E-value=0.00082  Score=61.55  Aligned_cols=221  Identities=17%  Similarity=0.164  Sum_probs=128.3

Q ss_pred             EECCCCCeE-EEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCee-Eeee--
Q 042434          274 AWSPDDTKL-LTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEI-KAWR--  349 (517)
Q Consensus       274 ~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~-~~~~--  349 (517)
                      .|.++...| .+--..+.|.-|+..+++.. .+ .....+.++.....+..|+++...    ++.++...... ..+.  
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~-~~p~~~~~~~~~d~~g~Lv~~~~g----~~~~~~~~~~~~t~~~~~  104 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VF-PSPGGFSSGALIDAGGRLIACEHG----VRLLDPDTGGKITLLAEP  104 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EE-ECCCCcccceeecCCCeEEEEccc----cEEEeccCCceeEEeccc
Confidence            467777644 44455778999998776432 33 223334555555455556555544    44555432222 2221  


Q ss_pred             --CcCCCceEEEEEccCCCEEEEEeC-----------CCcEEEEECCCceEEeecc-CCCeeEEEEcCCCCEEEEEeC-C
Q 042434          350 --GTRIPKVLDLAVTPDGENLISVLS-----------DKDIRILNLGTYAERVISE-EHPITSLSVSVDCKNFIVNLN-S  414 (517)
Q Consensus       350 --~~~~~~i~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~-d  414 (517)
                        .......+.....|+|.+.+....           -|.++.+|........... -...+.++||||++.++.+.. .
T Consensus       105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~  184 (307)
T COG3386         105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPA  184 (307)
T ss_pred             cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCC
Confidence              222235678889999987665444           1346666653333333333 556789999999988777755 5


Q ss_pred             CeEEEEEcCC--C---CccceEEeCcccCceEEEeecCCCCCcEEEEecCCC-cEEEEecCCCceeEEecCCCCCeeEEE
Q 042434          415 QEIHMWDVAG--K---WEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENS-QIYIWNRRNSKPIEILSGHSMTVNCVS  488 (517)
Q Consensus       415 ~~i~~~d~~~--~---~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~h~~~v~~v~  488 (517)
                      +.|.-|++..  .   .............  ....++...+|.+-+++..+| .|.+|+.. |+++..+.-+...+++++
T Consensus       185 ~~i~r~~~d~~~g~~~~~~~~~~~~~~~G--~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~  261 (307)
T COG3386         185 NRIHRYDLDPATGPIGGRRGFVDFDEEPG--LPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPA  261 (307)
T ss_pred             CeEEEEecCcccCccCCcceEEEccCCCC--CCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccce
Confidence            7888888752  1   0111111111111  011122245677765555554 89999988 999999887778888999


Q ss_pred             ec-CCCCcEEEEeeCC
Q 042434          489 WN-PKRPKMLASASDD  503 (517)
Q Consensus       489 ~~-~~~~~~l~s~~~d  503 (517)
                      |- |+...+++|+...
T Consensus       262 FgG~~~~~L~iTs~~~  277 (307)
T COG3386         262 FGGPDLNTLYITSARS  277 (307)
T ss_pred             EeCCCcCEEEEEecCC
Confidence            85 4444566666555

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.24  E-value=0.0008  Score=64.06  Aligned_cols=233  Identities=15%  Similarity=0.104  Sum_probs=125.9

Q ss_pred             cEEEEEECCCCCEEEEeeCCCcEEEEEecCCCe----------------------------------------eeEEEEe
Q 042434          224 EVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSK----------------------------------------LTLKHTL  263 (517)
Q Consensus       224 ~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~----------------------------------------~~~~~~~  263 (517)
                      .|+.+.|+++..-|+.|...|.|.||.+...+.                                        +.+...+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            588999999988899999999999997643211                                        2233334


Q ss_pred             ccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEe--CC------CCCceEEEEEeC-----CC---CeEEEe
Q 042434          264 RSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTF--GD------HGFIVSSCAWFP-----DS---KRLVCG  327 (517)
Q Consensus       264 ~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~------~~~~v~~i~~~~-----~~---~~l~~~  327 (517)
                      ....++|++++.| |=-++|.|..+|.+.|.|++....+..-  ..      ....|+++.|..     |+   -.+++|
T Consensus        83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG  161 (395)
T PF08596_consen   83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG  161 (395)
T ss_dssp             ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred             eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence            4557899999998 4459999999999999999887776642  12      345688888863     33   378899


Q ss_pred             eCCCceeEEEEeCCC-C--eeE--eeeCcCCCceEEEE-EccC--------------------CCEEEEEeCCCcEEEEE
Q 042434          328 SSDTEKGIFMCDCDG-N--EIK--AWRGTRIPKVLDLA-VTPD--------------------GENLISVLSDKDIRILN  381 (517)
Q Consensus       328 ~~d~~v~i~~~~~~~-~--~~~--~~~~~~~~~i~~~~-~~~~--------------------~~~l~~~~~dg~i~i~d  381 (517)
                      +..|.+.++...... .  .+.  .......+++..+. ++.+                    -+.+++...+..++++.
T Consensus       162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~  241 (395)
T PF08596_consen  162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK  241 (395)
T ss_dssp             ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred             eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence            999996666555421 1  111  11112223444443 3211                    12355556678899999


Q ss_pred             CCCceEEeeccCC--CeeEEEEc-----CCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcc-cCceEEEeecCCCCCcE
Q 042434          382 LGTYAERVISEEH--PITSLSVS-----VDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHS-QNKYVIRSCFGGLDGTF  453 (517)
Q Consensus       382 ~~~~~~~~~~~~~--~i~~~~~s-----~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~  453 (517)
                      ..+.+........  ....+.+-     ..+..|++-..+|.+++|.+..- +.+....-.. .....+....++++|..
T Consensus       242 ~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L-kei~~~~l~~~~d~~~~~~ssis~~Gdi  320 (395)
T PF08596_consen  242 PPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL-KEIKSVSLPPPLDSRRLSSSSISRNGDI  320 (395)
T ss_dssp             TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT---EEEEEE-SS---HHHHTT-EE-TTS-E
T ss_pred             CCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc-hHhhcccCCCccccccccccEECCCCCE
Confidence            9877632222233  23344442     35666888889999999999875 3333333211 01111112223567776


Q ss_pred             EEEec
Q 042434          454 IASGS  458 (517)
Q Consensus       454 l~~~~  458 (517)
                      ++-.+
T Consensus       321 ~~~~g  325 (395)
T PF08596_consen  321 FYWTG  325 (395)
T ss_dssp             EEE-S
T ss_pred             EEEeC
Confidence            65544

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.19  E-value=6.7e-07  Score=85.00  Aligned_cols=198  Identities=20%  Similarity=0.221  Sum_probs=125.7

Q ss_pred             cCcEEEEEECCC--CCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECC-CCCeEEEEe----CCCeEEEE
Q 042434          222 KNEVWFVQFSNN--GEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP-DDTKLLTCG----NAEVLKLW  294 (517)
Q Consensus       222 ~~~v~~~~~s~~--~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~----~dg~i~iw  294 (517)
                      ...+.|++++.+  ...++.|..+|.|-+-.+.....- ......+|..+.++++|++ |.+.||+|-    .|..+.||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw  134 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW  134 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-cceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence            345566666553  357889999999999877533221 1234567888999999998 556777763    35689999


Q ss_pred             ECCCC--cEEE--EeCC-CCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEcc-CCCEE
Q 042434          295 DVETG--ICKH--TFGD-HGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTP-DGENL  368 (517)
Q Consensus       295 d~~~~--~~~~--~~~~-~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l  368 (517)
                      |+.++  .+..  .|.. ......+++|..+.+++.+|.....  +.++|.+.......... ...+..+.+.| .+.++
T Consensus       135 di~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~--~~ifdlRqs~~~~~svn-Tk~vqG~tVdp~~~nY~  211 (783)
T KOG1008|consen  135 DINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRS--VHIFDLRQSLDSVSSVN-TKYVQGITVDPFSPNYF  211 (783)
T ss_pred             ecccccCCCccccccccccccCccccccccCcchhhcccccch--hhhhhhhhhhhhhhhhh-hhhcccceecCCCCCce
Confidence            99877  2221  2222 3345568899988999999988888  55566553222111111 12466677888 66676


Q ss_pred             EEEeCCCcEEEEEC-CCce--EEee-cc----CCCeeEEEEcCCCC-EEEEEe-CCCeEEEEEcCC
Q 042434          369 ISVLSDKDIRILNL-GTYA--ERVI-SE----EHPITSLSVSVDCK-NFIVNL-NSQEIHMWDVAG  424 (517)
Q Consensus       369 ~~~~~dg~i~i~d~-~~~~--~~~~-~~----~~~i~~~~~s~~~~-~l~~~~-~d~~i~~~d~~~  424 (517)
                      ++- .||.|.+||. +..+  .... ..    ...+..++|.|... .+++.+ ..++|++||+..
T Consensus       212 cs~-~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  212 CSN-SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             ecc-ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            655 4999999994 3322  1111 11    22488999999532 344444 457899999853

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.19  E-value=0.0077  Score=58.92  Aligned_cols=243  Identities=14%  Similarity=0.142  Sum_probs=129.4

Q ss_pred             cEEEEEECCCCCEEEEe-eCCC----cEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCC---------
Q 042434          224 EVWFVQFSNNGEYLASS-SSDC----SAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAE---------  289 (517)
Q Consensus       224 ~v~~~~~s~~~~~l~t~-~~dg----~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg---------  289 (517)
                      .+...++||+|+++|.+ +..|    .+++.|+.++....  ..+...  ....+.|.+|++.++....+.         
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~--d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~  200 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLP--DGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGY  200 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEE--EEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcC--Cccccc--ccceEEEeCCCCEEEEEEeCcccccccCCC
Confidence            34467899999999865 3334    49999998774332  122211  123399999988876654332         


Q ss_pred             --eEEEEECCCCcE--EEEeCCCCCc--eEEEEEeCCCCeEEEeeCCCc--eeEEEEeCCCC-----eeEeeeCcCCCce
Q 042434          290 --VLKLWDVETGIC--KHTFGDHGFI--VSSCAWFPDSKRLVCGSSDTE--KGIFMCDCDGN-----EIKAWRGTRIPKV  356 (517)
Q Consensus       290 --~i~iwd~~~~~~--~~~~~~~~~~--v~~i~~~~~~~~l~~~~~d~~--v~i~~~~~~~~-----~~~~~~~~~~~~i  356 (517)
                        .|+.|++.++..  ...+......  ...+..++|+++++..+..+.  -.++..+....     ....+.....+..
T Consensus       201 ~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~  280 (414)
T PF02897_consen  201 PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVE  280 (414)
T ss_dssp             CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-E
T ss_pred             CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceE
Confidence              478888877642  2445443332  567889999999876554433  45888888764     3444443333233


Q ss_pred             EEEEEccCCCEEEEEe---CCCcEEEEECCCce-----EEeeccCCCeeEEEEcCCCCEEEEEeC-CC--eEEEEEcCCC
Q 042434          357 LDLAVTPDGENLISVL---SDKDIRILNLGTYA-----ERVISEEHPITSLSVSVDCKNFIVNLN-SQ--EIHMWDVAGK  425 (517)
Q Consensus       357 ~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~-----~~~~~~~~~i~~~~~s~~~~~l~~~~~-d~--~i~~~d~~~~  425 (517)
                      ..+... .+.+++...   .++.|...++....     .....+...+.-..+...+++|++... ++  .|.++++..+
T Consensus       281 ~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~  359 (414)
T PF02897_consen  281 YYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDG  359 (414)
T ss_dssp             EEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-T
T ss_pred             EEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCC
Confidence            333333 333433332   23567777877654     244444444444444445556665544 33  6888998722


Q ss_pred             CccceEEeCcccCceEEEeecCCCCCcEEE--EecC--CCcEEEEecCCCcee
Q 042434          426 WEKPFKYTGHSQNKYVIRSCFGGLDGTFIA--SGSE--NSQIYIWNRRNSKPI  474 (517)
Q Consensus       426 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~--~~~~--dg~i~iwd~~~~~~~  474 (517)
                       ............  .+......++++.+.  ..|.  -++++.||+.+++..
T Consensus       360 -~~~~~~~~p~~g--~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~  409 (414)
T PF02897_consen  360 -KESREIPLPEAG--SVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT  409 (414)
T ss_dssp             -EEEEEEESSSSS--EEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred             -cEEeeecCCcce--EEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence             222222222222  122222233333332  2222  257888888887643

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.17  E-value=0.0012  Score=61.04  Aligned_cols=224  Identities=15%  Similarity=0.095  Sum_probs=116.1

Q ss_pred             EECCCCCeEEEEeC-CC--eEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeC
Q 042434          274 AWSPDDTKLLTCGN-AE--VLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRG  350 (517)
Q Consensus       274 ~~s~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~  350 (517)
                      +|.+||+.|+.++. ||  .+.+.|+.+++..+.-.+.........++|+++.++....+..  ++..|+.+.....+..
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~--l~~vdL~T~e~~~vy~  119 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRS--LRRVDLDTLEERVVYE  119 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTE--EEEEETTT--EEEEEE
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCe--EEEEECCcCcEEEEEE
Confidence            57788977665554 54  6778899998876654433232335667788888766555555  8899998876655554


Q ss_pred             cCCCceEEEEE--ccCCCEEEEEeC----------------------CCcEEEEECCCce-EEeeccCCCeeEEEEcCCC
Q 042434          351 TRIPKVLDLAV--TPDGENLISVLS----------------------DKDIRILNLGTYA-ERVISEEHPITSLSVSVDC  405 (517)
Q Consensus       351 ~~~~~i~~~~~--~~~~~~l~~~~~----------------------dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~  405 (517)
                      .....+-...|  +.++..++..-.                      ...|.-.|+.+++ .........+..+.++|..
T Consensus       120 ~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~d  199 (386)
T PF14583_consen  120 VPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTD  199 (386)
T ss_dssp             --TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTE
T ss_pred             CCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCC
Confidence            44444544444  445655443211                      1356667888877 5666677788999999976


Q ss_pred             CEEEEEeCCC-----eEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEe-----cCCCcEEEEecCCCceeE
Q 042434          406 KNFIVNLNSQ-----EIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASG-----SENSQIYIWNRRNSKPIE  475 (517)
Q Consensus       406 ~~l~~~~~d~-----~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-----~~dg~i~iwd~~~~~~~~  475 (517)
                      ..+++-+..|     .-++|-++........+..+.. ...+..=+|.|||..|.--     +.+..|.-+|..+++...
T Consensus       200 p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~-~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~  278 (386)
T PF14583_consen  200 PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRME-GESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRR  278 (386)
T ss_dssp             EEEEEEEE-S-TTTSS-SEEEEETTS---EESS---T-TEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEE
T ss_pred             CCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCC-CcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceE
Confidence            6655554433     1356666544344444444443 4556667789999877642     334567778888886543


Q ss_pred             EecCCCCCeeEEEecCCCCcEEEEeeCC
Q 042434          476 ILSGHSMTVNCVSWNPKRPKMLASASDD  503 (517)
Q Consensus       476 ~~~~h~~~v~~v~~~~~~~~~l~s~~~d  503 (517)
                      ...  ......+--+++| .+++-=|.|
T Consensus       279 ~~~--~p~~~H~~ss~Dg-~L~vGDG~d  303 (386)
T PF14583_consen  279 LME--MPWCSHFMSSPDG-KLFVGDGGD  303 (386)
T ss_dssp             EEE--E-SEEEEEE-TTS-SEEEEEE--
T ss_pred             EEe--CCceeeeEEcCCC-CEEEecCCC
Confidence            332  2245566678888 565543443

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.16  E-value=0.00024  Score=68.58  Aligned_cols=194  Identities=13%  Similarity=0.132  Sum_probs=97.7

Q ss_pred             cEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCC-------------------------CeeeEEEEeccCC-
Q 042434          214 TVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLED-------------------------SKLTLKHTLRSHQ-  267 (517)
Q Consensus       214 ~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~-------------------------~~~~~~~~~~~h~-  267 (517)
                      ..+.+....-.+..+.++|+|++++.+ .||...|+.....                         ......+.+.... 
T Consensus        24 ~~k~lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~  102 (443)
T PF04053_consen   24 SVKELGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAFGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVV  102 (443)
T ss_dssp             --EEEEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEEEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT
T ss_pred             EeccCCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccccCceeEEEEecCccEEEEECCCeEEEEEcCccccc
Confidence            344444555567788888888888874 4566666653110                         0011111111111 


Q ss_pred             ------CCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCC
Q 042434          268 ------NPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD  341 (517)
Q Consensus       268 ------~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~  341 (517)
                            ..+..+-.   |..|...+.+ .|.+||+++++.++.+...  +|..+.|++++.+++..+.+.   +++++-+
T Consensus       103 k~i~~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~---i~il~~~  173 (443)
T PF04053_consen  103 KSIKLPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDS---IYILKYN  173 (443)
T ss_dssp             -----SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-S---EEEEEE-
T ss_pred             eEEcCCcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCe---EEEEEec
Confidence                  11222211   6667666544 8999999999999998643  389999999999999998775   4444433


Q ss_pred             CC------------eeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEE
Q 042434          342 GN------------EIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNF  408 (517)
Q Consensus       342 ~~------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l  408 (517)
                      ..            ........ ...|.+.+|..+  .++-.+.. .++.  +-.+. ........++.-+.+.++.+.+
T Consensus       174 ~~~~~~~~~~g~e~~f~~~~E~-~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~l  247 (443)
T PF04053_consen  174 LEAVAAIPEEGVEDAFELIHEI-SERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRL  247 (443)
T ss_dssp             HHHHHHBTTTB-GGGEEEEEEE--S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-SS--EEEEEETTTTEE
T ss_pred             chhcccccccCchhceEEEEEe-cceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcCCceEEEEEEccCCEE
Confidence            22            22222221 236888888766  44444444 5655  33344 3333335567777777777778


Q ss_pred             EEEeCCCeEEEEEcC
Q 042434          409 IVNLNSQEIHMWDVA  423 (517)
Q Consensus       409 ~~~~~d~~i~~~d~~  423 (517)
                      .....++.+..+.+.
T Consensus       248 y~~Dr~~~v~~~~ld  262 (443)
T PF04053_consen  248 YLIDRDGNVISYELD  262 (443)
T ss_dssp             EEE-TT--EEEEE--
T ss_pred             EEEECCCCEEEEEEC
Confidence            888888887777653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.15  E-value=9.3e-07  Score=84.08  Aligned_cols=196  Identities=20%  Similarity=0.265  Sum_probs=123.2

Q ss_pred             ceEEEEEeCCC--CeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccC-CCEEEEEe----CCCcEEEEECC
Q 042434          311 IVSSCAWFPDS--KRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPD-GENLISVL----SDKDIRILNLG  383 (517)
Q Consensus       311 ~v~~i~~~~~~--~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~----~dg~i~i~d~~  383 (517)
                      .+.|++++-+.  ..+++|..+|.|.+.........-...........++++|++- .+.|++|-    .|..+.|||+.
T Consensus        58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~  137 (783)
T KOG1008|consen   58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN  137 (783)
T ss_pred             CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence            45556555433  3677888888854444333222223444445557899999984 45666653    25579999998


Q ss_pred             Cce------EEee-ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCC-CCcEEE
Q 042434          384 TYA------ERVI-SEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGL-DGTFIA  455 (517)
Q Consensus       384 ~~~------~~~~-~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~  455 (517)
                      +.-      ..+. .......+++|..+.+.+++|.....+.++|++........+....  ...++.   +| .++|++
T Consensus       138 s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~--vqG~tV---dp~~~nY~c  212 (783)
T KOG1008|consen  138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKY--VQGITV---DPFSPNYFC  212 (783)
T ss_pred             cccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhh--ccccee---cCCCCCcee
Confidence            762      1111 2344566889998999999999999999999974322222221111  011222   44 566777


Q ss_pred             EecCCCcEEEEe-cCCC-ceeEEecCCCC----CeeEEEecCCCCcEEEEeeCC-CcEEEeCCC
Q 042434          456 SGSENSQIYIWN-RRNS-KPIEILSGHSM----TVNCVSWNPKRPKMLASASDD-HTIRIWGPC  512 (517)
Q Consensus       456 ~~~~dg~i~iwd-~~~~-~~~~~~~~h~~----~v~~v~~~~~~~~~l~s~~~d-g~v~iw~~~  512 (517)
                      +-. ||.|.+|| ..+- .++..+.....    .+..++|+|..+.++++...| ++|+.+++.
T Consensus       213 s~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  213 SNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             ccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            665 99999999 3332 23333332222    489999999887788888865 689999875

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.09  E-value=0.0059  Score=60.82  Aligned_cols=236  Identities=12%  Similarity=0.112  Sum_probs=126.6

Q ss_pred             CEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCC--CEEEEEECC--CCCeEEEEe---------CCCeEEEEECCCCcE
Q 042434          235 EYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQN--PVSFVAWSP--DDTKLLTCG---------NAEVLKLWDVETGIC  301 (517)
Q Consensus       235 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~--~v~~l~~s~--~~~~l~s~~---------~dg~i~iwd~~~~~~  301 (517)
                      ..++.++.+|.|.-+|..+++..   -.+.....  .-..+.-+|  .+..++.++         .+|.+..+|..+|+.
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~---W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~  187 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQV---WKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKL  187 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEe---eeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCce
Confidence            57778888999999999877432   22221111  000111112  124455543         367899999999998


Q ss_pred             EEEeCCCCC--------------------ce-EEEEEeCCCCeEEEeeCCCc----------------eeEEEEeCCCCe
Q 042434          302 KHTFGDHGF--------------------IV-SSCAWFPDSKRLVCGSSDTE----------------KGIFMCDCDGNE  344 (517)
Q Consensus       302 ~~~~~~~~~--------------------~v-~~i~~~~~~~~l~~~~~d~~----------------v~i~~~~~~~~~  344 (517)
                      +..+.....                    .+ .+.++.+.+..++.++.++.                -.++-+|..+..
T Consensus       188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~  267 (488)
T cd00216         188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK  267 (488)
T ss_pred             eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence            877643211                    01 12344445667777776551                127777776443


Q ss_pred             eE-eeeCcCC---------C-ceEEEEEccCCC---EEEEEeCCCcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEE
Q 042434          345 IK-AWRGTRI---------P-KVLDLAVTPDGE---NLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIV  410 (517)
Q Consensus       345 ~~-~~~~~~~---------~-~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  410 (517)
                      .. .......         . .+..+. .-++.   .+++++.+|.+..+|..+++........ ...++.+|  ..+++
T Consensus       268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-~~~~~~~~--~~vyv  343 (488)
T cd00216         268 VKWFYQTTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-EQPMAYDP--GLVYL  343 (488)
T ss_pred             EEEEeeCCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-ccccccCC--ceEEE
Confidence            32 2221110         0 011111 11333   5778889999999999998832221110 11223333  23333


Q ss_pred             E------------------eCCCeEEEEEcCCCCccceEEeCcccC------ceEEEeecCCCCCcEEEEecCCCcEEEE
Q 042434          411 N------------------LNSQEIHMWDVAGKWEKPFKYTGHSQN------KYVIRSCFGGLDGTFIASGSENSQIYIW  466 (517)
Q Consensus       411 ~------------------~~d~~i~~~d~~~~~~~~~~~~~~~~~------~~~i~~~~~s~~~~~l~~~~~dg~i~iw  466 (517)
                      +                  ..+|.+..+|+.++ +...........      ...... ..-..+..|++++.||.|+.+
T Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG-~~~W~~~~~~~~~~~~~g~~~~~~-~~~~~g~~v~~g~~dG~l~al  421 (488)
T cd00216         344 GAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTG-KVVWEKREGTIRDSWNIGFPHWGG-SLATAGNLVFAGAADGYFRAF  421 (488)
T ss_pred             ccccccccCcccccCCCCCCCceEEEEEeCCCC-cEeeEeeCCccccccccCCcccCc-ceEecCCeEEEECCCCeEEEE
Confidence            2                  23567778887766 333332221000      000000 001246788999999999999


Q ss_pred             ecCCCceeEEecC
Q 042434          467 NRRNSKPIEILSG  479 (517)
Q Consensus       467 d~~~~~~~~~~~~  479 (517)
                      |..+|+.+...+-
T Consensus       422 d~~tG~~lW~~~~  434 (488)
T cd00216         422 DATTGKELWKFRT  434 (488)
T ss_pred             ECCCCceeeEEEC
Confidence            9999999888764

The alignment model contains an 8-bladed beta-propeller.

>smart00668 CTLH C-terminal to LisH motif

Probab=98.07  E-value=4.4e-06  Score=55.73  Aligned_cols=53  Identities=32%  Similarity=0.484  Sum_probs=45.1

Q ss_pred             hHHHHHHHHHcCChHHHHHHhhcccCCChhhhcccchhhhhhhhhHhhhcCCh
Q 042434           51 GFERLEVQILNGDWDGCIDTLIAITDLNDERRASVLFPVFKQCFLEYLNRGDD  103 (517)
Q Consensus        51 ~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~  103 (517)
                      ....++..|+.|+|+.|+..++............+.|.+++|+|+|+++.++.
T Consensus         4 ~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~~l~f~L~~q~~lell~~~~~   56 (58)
T smart00668        4 ERKRIRELILKGDWDEALEWLSSLKPPLLERNSKLEFELRKQKFLELVRQGKL   56 (58)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCCCchhHHHHHHHHHHHHcCCc
Confidence            46789999999999999999998866544555689999999999999987654

Alpha-helical motif of unknown function.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.01  E-value=0.009  Score=52.83  Aligned_cols=202  Identities=11%  Similarity=0.092  Sum_probs=110.7

Q ss_pred             EEEeccccCcEEEEEECCCCC-EEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEE
Q 042434          215 VQILTEHKNEVWFVQFSNNGE-YLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKL  293 (517)
Q Consensus       215 ~~~l~~h~~~v~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i  293 (517)
                      .+.+.+-...+..++|+|+.+ ++++....+.|..++.. + +......+.+ .+..-.|++..++.++++.-.++.+.+
T Consensus        14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G-~vlr~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~   90 (248)
T PF06977_consen   14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-G-KVLRRIPLDG-FGDYEGITYLGNGRYVLSEERDQRLYI   90 (248)
T ss_dssp             EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT----EEEEEE-SS--SSEEEEEE-STTEEEEEETTTTEEEE
T ss_pred             eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-C-CEEEEEeCCC-CCCceeEEEECCCEEEEEEcCCCcEEE
Confidence            346677777899999999755 55566667777666653 3 3222223333 356788999888877777667899999


Q ss_pred             EECCCCc------EEEEeC-----CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeC--CCCeeEeee-------CcCC
Q 042434          294 WDVETGI------CKHTFG-----DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDC--DGNEIKAWR-------GTRI  353 (517)
Q Consensus       294 wd~~~~~------~~~~~~-----~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~--~~~~~~~~~-------~~~~  353 (517)
                      +++....      ....+.     .+...+-.++|.|.++.|+++-...-..++.++.  ....+....       ....
T Consensus        91 ~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (248)
T PF06977_consen   91 FTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFV  170 (248)
T ss_dssp             EEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--S
T ss_pred             EEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccccccee
Confidence            9883321      111121     2456789999999988888887776666787776  222221111       1122


Q ss_pred             CceEEEEEccCCC-EEEEEeCCCcEEEEECCCceEEeeccC----------CCeeEEEEcCCCCEEEEEeCCCeEEEE
Q 042434          354 PKVLDLAVTPDGE-NLISVLSDKDIRILNLGTYAERVISEE----------HPITSLSVSVDCKNFIVNLNSQEIHMW  420 (517)
Q Consensus       354 ~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~----------~~i~~~~~s~~~~~l~~~~~d~~i~~~  420 (517)
                      ..+.++.++|... +++....+..|..+|..........-.          .....+++.++|+.++++ ..+..+.|
T Consensus       171 ~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f  247 (248)
T PF06977_consen  171 RDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF  247 (248)
T ss_dssp             S---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred             ccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence            3577889998654 556666677888888554432222111          257889999998655554 44444433

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=98.01  E-value=0.017  Score=59.05  Aligned_cols=283  Identities=17%  Similarity=0.168  Sum_probs=153.7

Q ss_pred             ccCcEEEEEECCCC------CEEEEeeCCCcEEEEEecCCCeeeEEEEecc--CCCCEEEEEECCCCCeEEEEeCCCeEE
Q 042434          221 HKNEVWFVQFSNNG------EYLASSSSDCSAIIWKVLEDSKLTLKHTLRS--HQNPVSFVAWSPDDTKLLTCGNAEVLK  292 (517)
Q Consensus       221 h~~~v~~~~~s~~~------~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~--h~~~v~~l~~s~~~~~l~s~~~dg~i~  292 (517)
                      -...|.|+.++|-|      ++++.|..+..+.+.-...+........+.+  -...|....|-.|..+|.++..||.+.
T Consensus       529 ~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~  608 (1096)
T KOG1897|consen  529 FEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALL  608 (1096)
T ss_pred             ecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEE
Confidence            35789999999842      2788888777766654433322211111211  234466666766789999999999886


Q ss_pred             EE--ECCCCcEEEEe--CCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEE-Ecc-C-C
Q 042434          293 LW--DVETGICKHTF--GDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLA-VTP-D-G  365 (517)
Q Consensus       293 iw--d~~~~~~~~~~--~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~-~~~-~-~  365 (517)
                      -+  |..+|.....-  .-...++.--.|+..++.-+.+..|.-  ...|..+++.+.....-.  .+..++ |+. . .
T Consensus       609 ~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP--~viY~~n~kLv~spls~k--ev~~~c~f~s~a~~  684 (1096)
T KOG1897|consen  609 YFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRP--TVIYSSNGKLVYSPLSLK--EVNHMCPFNSDAYP  684 (1096)
T ss_pred             EEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCC--EEEEecCCcEEEeccchH--HhhhhcccccccCC
Confidence            65  55555432222  223456666667766665555555555  444444444332222111  122221 222 1 2


Q ss_pred             CEEEEEeCCCcEEEEECCCce---EEeeccCCCeeEEEEcCCCCEEEEEeCC--------------CeEEEEEcCCCCcc
Q 042434          366 ENLISVLSDKDIRILNLGTYA---ERVISEEHPITSLSVSVDCKNFIVNLNS--------------QEIHMWDVAGKWEK  428 (517)
Q Consensus       366 ~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~d--------------~~i~~~d~~~~~~~  428 (517)
                      ..++.+ ..+.+++.-+..-.   ............+++.+....+.+.+..              ..++++|-++.   
T Consensus       685 d~l~~~-~~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf---  760 (1096)
T KOG1897|consen  685 DSLASA-NGGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTF---  760 (1096)
T ss_pred             ceEEEe-cCCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCce---
Confidence            234443 45556666554433   4446666777888888755555554431              13556665432   


Q ss_pred             ceEEeCcc----cCceEEEeecCCCC-CcEEEEec----------CCCcEEEEecCCCceeEEecCC--CCCeeEEEecC
Q 042434          429 PFKYTGHS----QNKYVIRSCFGGLD-GTFIASGS----------ENSQIYIWNRRNSKPIEILSGH--SMTVNCVSWNP  491 (517)
Q Consensus       429 ~~~~~~~~----~~~~~i~~~~~s~~-~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~h--~~~v~~v~~~~  491 (517)
                       ..+..|.    .....+.++.+..| +.++++|+          ..|.|.+|....+..+.....+  ++.+.++.-- 
T Consensus       761 -~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-  838 (1096)
T KOG1897|consen  761 -EVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-  838 (1096)
T ss_pred             -eEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-
Confidence             1222221    12233444444555 77788775          3588889887774444443322  4666666543 


Q ss_pred             CCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434          492 KRPKMLASASDDHTIRIWGPCQSSE  516 (517)
Q Consensus       492 ~~~~~l~s~~~dg~v~iw~~~~~~~  516 (517)
                      +| +++|.  -...|++|+..++++
T Consensus       839 ng-kllA~--In~~vrLye~t~~~e  860 (1096)
T KOG1897|consen  839 NG-KLLAG--INQSVRLYEWTTERE  860 (1096)
T ss_pred             CC-eEEEe--cCcEEEEEEccccce
Confidence            34 45544  456799999887754

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.01  E-value=0.0026  Score=59.77  Aligned_cols=181  Identities=15%  Similarity=0.199  Sum_probs=113.7

Q ss_pred             CCEEEEeeC----------CCcEEEEEecCC----CeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCC
Q 042434          234 GEYLASSSS----------DCSAIIWKVLED----SKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETG  299 (517)
Q Consensus       234 ~~~l~t~~~----------dg~i~iw~~~~~----~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~  299 (517)
                      ..+++.|+.          .|.|.++++...    .+++.+... ...++|++++-- ++ +|+++. .+.|.+|++...
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~-~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~  117 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHST-EVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNS  117 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEE-EESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETT
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEE-eecCcceEhhhh-CC-EEEEee-cCEEEEEEccCc
Confidence            468887753          288999999763    244444443 347889998866 34 444443 478999999887


Q ss_pred             c-EEEEeC-CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeC-cCCCceEEEEEccCCCEEEEEeCCCc
Q 042434          300 I-CKHTFG-DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRG-TRIPKVLDLAVTPDGENLISVLSDKD  376 (517)
Q Consensus       300 ~-~~~~~~-~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~  376 (517)
                      + ....-. .....+.++...  ++++++|.....+.++.|+..+..+..... .....++++.+-++++.+++++.+|.
T Consensus       118 ~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gn  195 (321)
T PF03178_consen  118 KTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGN  195 (321)
T ss_dssp             SSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSE
T ss_pred             ccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCe
Confidence            7 443322 223466666665  559999999888888888987665544433 22346888888867679999999999


Q ss_pred             EEEEECCCc---------e---EEeeccCCCeeEE---EEcC--CCC------EEEEEeCCCeEEEE
Q 042434          377 IRILNLGTY---------A---ERVISEEHPITSL---SVSV--DCK------NFIVNLNSQEIHMW  420 (517)
Q Consensus       377 i~i~d~~~~---------~---~~~~~~~~~i~~~---~~s~--~~~------~l~~~~~d~~i~~~  420 (517)
                      +.++.....         .   ......+..++++   ++.|  .+.      .++.++.+|.|...
T Consensus       196 l~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  196 LFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             EEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             EEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence            999887531         1   2233445567777   5555  222      37778888887733

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10

Probab=98.00  E-value=1.4e-05  Score=65.06  Aligned_cols=129  Identities=25%  Similarity=0.251  Sum_probs=87.2

Q ss_pred             HHHHHHHHHcCChHHHHHHhhcccCCChhhhcccchhhhhhhhhHhhhcCChhHHHHHHHhhcccCCC-ChhHHhhhhhc
Q 042434           52 FERLEVQILNGDWDGCIDTLIAITDLNDERRASVLFPVFKQCFLEYLNRGDDSLALNVLRKRVSSLQM-SKDTIHNLASS  130 (517)
Q Consensus        52 ~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~a~~~lr~~~~~~~~-~~~~~~~l~~~  130 (517)
                      ...++++|.+|+++.|+..++.....-......+.|.++.|+|+|++..++..+|+.+.|+.+.|... ..+.++.+..+
T Consensus         5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~~l   84 (145)
T PF10607_consen    5 RKKIRQAILNGDIDPAIEWLNENFPELLKRNSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLMSL   84 (145)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHcCHHHHhcCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            46789999999999999999877432223346789999999999999999999999999998865554 45566677777


Q ss_pred             cccccccc--cccCCcchhhhHHHHHHHHHHHhCCCCCCCC-cchHHHHHHHH
Q 042434          131 MLCLEGMN--LGKIDEGVVLELRKRLLVELERLLPPPEVVP-ERRLEHLVETA  180 (517)
Q Consensus       131 ~~~~~~~~--~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~-~~rl~~l~~~~  180 (517)
                      +.......  ......-.....|.++...+...+-.....| ...|..++...
T Consensus        85 L~~~~~~~~~~s~~~~l~~~~~~~~la~~~~~~~l~~~~~~~~s~L~~~~~~g  137 (145)
T PF10607_consen   85 LAYPDPEEPLPSPYKELLSPERREELAEEFNSAILKSYGLPKESPLEVILKAG  137 (145)
T ss_pred             HHcCCcccccchHHHHHhChHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHH
Confidence            66542211  1111111122567788877777543333333 44555555544

RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.98  E-value=4.6e-05  Score=72.92  Aligned_cols=95  Identities=17%  Similarity=0.198  Sum_probs=79.4

Q ss_pred             ccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEE-EEEECCCCCeEEEEeCCCeEEEEECCCC
Q 042434          221 HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVS-FVAWSPDDTKLLTCGNAEVLKLWDVETG  299 (517)
Q Consensus       221 h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~-~l~~s~~~~~l~s~~~dg~i~iwd~~~~  299 (517)
                      -...|..+.|+|.-.++|++..+|.|.+..++    ++.+.++.-|...++ +++|.|||+.||+|-.||+|++.|+++|
T Consensus        19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n----~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~   94 (665)
T KOG4640|consen   19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN----WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKG   94 (665)
T ss_pred             cccceEEEEEcCccchhheeccCCcEEEEEec----cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCC
Confidence            45578889999999999999999999999884    455567776777777 9999999999999999999999999999


Q ss_pred             cEEEEeC-CCCCceEEEEEeC
Q 042434          300 ICKHTFG-DHGFIVSSCAWFP  319 (517)
Q Consensus       300 ~~~~~~~-~~~~~v~~i~~~~  319 (517)
                      ..+..+. .....|.++.|.+
T Consensus        95 ~~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   95 GRLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             Cceeccccccccchheeeccc
Confidence            8877642 3466788888863

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.97  E-value=0.02  Score=55.38  Aligned_cols=168  Identities=13%  Similarity=0.217  Sum_probs=92.4

Q ss_pred             cEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEe-------CCCCCceEEEEE
Q 042434          245 SAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTF-------GDHGFIVSSCAW  317 (517)
Q Consensus       245 ~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------~~~~~~v~~i~~  317 (517)
                      .|.||+.. |..+   .++.-..+.|.++.|+.+. .|++...||.++++|+. |+....+       .-....+.+..+
T Consensus        62 ~I~iys~s-G~ll---~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~  135 (410)
T PF04841_consen   62 SIQIYSSS-GKLL---SSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWF  135 (410)
T ss_pred             EEEEECCC-CCEe---EEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCC-CceeechhhhccccCccccccccccc
Confidence            48888864 3222   2222223899999999765 55566799999999986 3331111       111222223333


Q ss_pred             eCCCCeEEEeeCCCceeEEEEeCCCCeeE--eee---C----cC-CCceEE-EEEccCCCEEEEEeCCCcEEEEECCCce
Q 042434          318 FPDSKRLVCGSSDTEKGIFMCDCDGNEIK--AWR---G----TR-IPKVLD-LAVTPDGENLISVLSDKDIRILNLGTYA  386 (517)
Q Consensus       318 ~~~~~~l~~~~~d~~v~i~~~~~~~~~~~--~~~---~----~~-~~~i~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~  386 (517)
                      ..+|-.+++  .++.  ++.......+..  ...   .    .+ ...... ..++.+....+....++.+.+.+-....
T Consensus       136 ~~~GivvLt--~~~~--~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~  211 (410)
T PF04841_consen  136 YKNGIVVLT--GNNR--FYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFK  211 (410)
T ss_pred             CCCCEEEEC--CCCe--EEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccc
Confidence            335533333  3444  555443332211  110   0    00 000100 2344455555555666666655543321


Q ss_pred             EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 042434          387 ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAG  424 (517)
Q Consensus       387 ~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~  424 (517)
                      .  ....+++..+++||++++++.-..+|.+.+.+..-
T Consensus       212 ~--i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf  247 (410)
T PF04841_consen  212 Q--IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDF  247 (410)
T ss_pred             c--ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcc
Confidence            1  33456899999999999999999999998887543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.97  E-value=0.0084  Score=57.56  Aligned_cols=196  Identities=14%  Similarity=0.098  Sum_probs=134.6

Q ss_pred             CcEEEEEECCCCCEE-EEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeC---CCeEEEEECCC
Q 042434          223 NEVWFVQFSNNGEYL-ASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGN---AEVLKLWDVET  298 (517)
Q Consensus       223 ~~v~~~~~s~~~~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~---dg~i~iwd~~~  298 (517)
                      ..-..++.++.+..+ ++...+..|.+.|.......   ..... ......++++|+++.+..+..   ++++.+.|..+
T Consensus        74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~---~~~~v-G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t  149 (381)
T COG3391          74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVL---GSIPV-GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT  149 (381)
T ss_pred             ccccceeeCCCCCeEEEecCCCCeEEEEcCccccee---eEeee-ccCCceEEECCCCCEEEEEecccCCceEEEEeCCC
Confidence            344567888888744 44445688999996544322   22221 225678999999988776655   68999999999


Q ss_pred             CcEEEEeCCCCCceEEEEEeCCCCeEEEee-CCCceeEEEEeCCCCeeEeee----CcCCCceEEEEEccCCCEEEEEeC
Q 042434          299 GICKHTFGDHGFIVSSCAWFPDSKRLVCGS-SDTEKGIFMCDCDGNEIKAWR----GTRIPKVLDLAVTPDGENLISVLS  373 (517)
Q Consensus       299 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~d~~v~i~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~  373 (517)
                      ++..........+ ..+++.|+|..++.+. .++.  +..++..+..+....    .........+.++|+|..+.+...
T Consensus       150 ~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~--v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~  226 (381)
T COG3391         150 NKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNT--VSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVAND  226 (381)
T ss_pred             CeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCe--EEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEec
Confidence            9888875433344 8899999999777766 4555  788887766655311    111124567899999997766554


Q ss_pred             C---CcEEEEECCCceEEee--ccCC-CeeEEEEcCCCCEEEEEeC-CCeEEEEEcCCC
Q 042434          374 D---KDIRILNLGTYAERVI--SEEH-PITSLSVSVDCKNFIVNLN-SQEIHMWDVAGK  425 (517)
Q Consensus       374 d---g~i~i~d~~~~~~~~~--~~~~-~i~~~~~s~~~~~l~~~~~-d~~i~~~d~~~~  425 (517)
                      .   +.+...|..+......  .... ....+..+|+|+.+.+... .+.+.+.|..+.
T Consensus       227 ~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~  285 (381)
T COG3391         227 GSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATD  285 (381)
T ss_pred             cCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence            4   5899999888772222  2222 5678899999999988855 478888887664

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.93  E-value=0.0049  Score=59.64  Aligned_cols=225  Identities=16%  Similarity=0.082  Sum_probs=104.8

Q ss_pred             eccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC
Q 042434          263 LRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG  342 (517)
Q Consensus       263 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~  342 (517)
                      +.........+.++|+|+++++ +.||...|+.....+... +    +.-...+|.+.+ .+|+-...+.+.|+ -+...
T Consensus        28 lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~-~----G~g~~~vw~~~n-~yAv~~~~~~I~I~-kn~~~   99 (443)
T PF04053_consen   28 LGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA-F----GSGLSFVWSSRN-RYAVLESSSTIKIY-KNFKN   99 (443)
T ss_dssp             EEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE-E----EE-SEEEE-TSS-EEEEE-TTS-EEEE-ETTEE
T ss_pred             CCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc-c----CceeEEEEecCc-cEEEEECCCeEEEE-EcCcc
Confidence            3334556789999999999988 557788888744433322 2    233457888844 56666667774442 22222


Q ss_pred             CeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEc
Q 042434          343 NEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDV  422 (517)
Q Consensus       343 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~  422 (517)
                      ...+.+....  .+..+..   |..|...+.+ .|.+||..+++......-.++..+.|++++.+++..+.+ .+.+++.
T Consensus       100 ~~~k~i~~~~--~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t~~-~i~il~~  172 (443)
T PF04053_consen  100 EVVKSIKLPF--SVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVTKD-SIYILKY  172 (443)
T ss_dssp             -TT-----SS---EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred             ccceEEcCCc--ccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEeCC-eEEEEEe
Confidence            2222222221  2333332   7766666544 899999999884444444458999999999999998765 4666554


Q ss_pred             CCC---------CccceEEeCc-ccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCC
Q 042434          423 AGK---------WEKPFKYTGH-SQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPK  492 (517)
Q Consensus       423 ~~~---------~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~  492 (517)
                      ...         .......... ..   .+.+..|..+ -++++. .. .|+.  +-.|+ ..++..-..++.=+.+.|.
T Consensus       173 ~~~~~~~~~~~g~e~~f~~~~E~~~---~IkSg~W~~d-~fiYtT-~~-~lkY--l~~Ge-~~~i~~ld~~~yllgy~~~  243 (443)
T PF04053_consen  173 NLEAVAAIPEEGVEDAFELIHEISE---RIKSGCWVED-CFIYTT-SN-HLKY--LVNGE-TGIIAHLDKPLYLLGYLPK  243 (443)
T ss_dssp             -HHHHHHBTTTB-GGGEEEEEEE-S-----SEEEEETT-EEEEE--TT-EEEE--EETTE-EEEEEE-SS--EEEEEETT
T ss_pred             cchhcccccccCchhceEEEEEecc---eeEEEEEEcC-EEEEEc-CC-eEEE--EEcCC-cceEEEcCCceEEEEEEcc
Confidence            221         0001111111 11   1223333222 222222 22 4444  22232 1122212456666777776


Q ss_pred             CCcEEEEeeCCCcEEEeCCC
Q 042434          493 RPKMLASASDDHTIRIWGPC  512 (517)
Q Consensus       493 ~~~~l~s~~~dg~v~iw~~~  512 (517)
                      . ..+.....|+.|..+.+.
T Consensus       244 ~-~~ly~~Dr~~~v~~~~ld  262 (443)
T PF04053_consen  244 E-NRLYLIDRDGNVISYELD  262 (443)
T ss_dssp             T-TEEEEE-TT--EEEEE--
T ss_pred             C-CEEEEEECCCCEEEEEEC
Confidence            5 567778888888877654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.91  E-value=0.0021  Score=64.71  Aligned_cols=217  Identities=13%  Similarity=0.091  Sum_probs=119.4

Q ss_pred             eEEEEECCCCcEEEEeCC-CCCceEEEEEeCCCCeEEEeeCC-Cc---eeEEEEeCCCCeeEeeeCcCCCceEEEEEccC
Q 042434          290 VLKLWDVETGICKHTFGD-HGFIVSSCAWFPDSKRLVCGSSD-TE---KGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPD  364 (517)
Q Consensus       290 ~i~iwd~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~~~~~d-~~---v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  364 (517)
                      .+..+|..++.......- ....-.+++.. ++...++|+.| |.   -.++.||...+.-.....-.......-...-+
T Consensus       302 ~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~  380 (571)
T KOG4441|consen  302 SVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLD  380 (571)
T ss_pred             eeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEEC
Confidence            577788877754432221 12222334443 56788889888 32   24888888866533322222212222222336


Q ss_pred             CCEEEEEeCCC-----cEEEEECCCce-EEeeccCCCeeEEEE-cCCCCEEEEEeCCC------eEEEEEcCCC-Cccce
Q 042434          365 GENLISVLSDK-----DIRILNLGTYA-ERVISEEHPITSLSV-SVDCKNFIVNLNSQ------EIHMWDVAGK-WEKPF  430 (517)
Q Consensus       365 ~~~l~~~~~dg-----~i~i~d~~~~~-~~~~~~~~~i~~~~~-s~~~~~l~~~~~d~------~i~~~d~~~~-~~~~~  430 (517)
                      |...++|+.||     ++-.||..+.+ ............... .-+|...++|+.++      .+..||..+. |....
T Consensus       381 g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~  460 (571)
T KOG4441|consen  381 GKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIA  460 (571)
T ss_pred             CEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecC
Confidence            77888998887     57889988877 222222223333332 33677777777554      4677887553 22222


Q ss_pred             EEeCcccCceEEEeecCCCCCcEEEEecCCCc-----EEEEecCCCceeEE--ecCCCCCeeEEEecCCCCcEEEEeeCC
Q 042434          431 KYTGHSQNKYVIRSCFGGLDGTFIASGSENSQ-----IYIWNRRNSKPIEI--LSGHSMTVNCVSWNPKRPKMLASASDD  503 (517)
Q Consensus       431 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~--~~~h~~~v~~v~~~~~~~~~l~s~~~d  503 (517)
                      ........   ...+  .-++.+.+.||.|+.     |..||..+.+....  +......+..+.+  ++ .+.+.||.|
T Consensus       461 ~M~~~R~~---~g~a--~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~-~ly~vGG~~  532 (571)
T KOG4441|consen  461 PMNTRRSG---FGVA--VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GG-KLYAVGGFD  532 (571)
T ss_pred             Cccccccc---ceEE--EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CC-EEEEEeccc
Confidence            22211111   1111  247888888988873     77888877654332  3323333333333  23 688899988


Q ss_pred             C-----cEEEeCCCCCC
Q 042434          504 H-----TIRIWGPCQSS  515 (517)
Q Consensus       504 g-----~v~iw~~~~~~  515 (517)
                      |     +|..||+.+.+
T Consensus       533 ~~~~l~~ve~ydp~~d~  549 (571)
T KOG4441|consen  533 GNNNLNTVECYDPETDT  549 (571)
T ss_pred             CccccceeEEcCCCCCc
Confidence            6     47778876643

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.89  E-value=0.013  Score=56.75  Aligned_cols=188  Identities=9%  Similarity=0.096  Sum_probs=92.2

Q ss_pred             CCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeE---EEEeccCCCCEEEEEECCCCCeEEEE
Q 042434          209 QIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTL---KHTLRSHQNPVSFVAWSPDDTKLLTC  285 (517)
Q Consensus       209 ~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~---~~~~~~h~~~v~~l~~s~~~~~l~s~  285 (517)
                      ...++.+..+.--.+.|.++.|+.+.. |+.-..||.++++|+.....+..   .....-....+....+..+|-.++  
T Consensus        67 s~sG~ll~~i~w~~~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvL--  143 (410)
T PF04841_consen   67 SSSGKLLSSIPWDSGRIVGMGWTDDEE-LVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVL--  143 (410)
T ss_pred             CCCCCEeEEEEECCCCEEEEEECCCCe-EEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCEEEE--
Confidence            344555555544448899999988655 44556899999999852210000   011111112222333443553333  


Q ss_pred             eCCCeEEEEE-CCCCcEEEEeCCCCC---------ceEE-EEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCC
Q 042434          286 GNAEVLKLWD-VETGICKHTFGDHGF---------IVSS-CAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIP  354 (517)
Q Consensus       286 ~~dg~i~iwd-~~~~~~~~~~~~~~~---------~v~~-i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~  354 (517)
                      ..++.+.+.+ .......+.+.....         .... ..++.+....+....++.  ++..+....  ...  ...+
T Consensus       144 t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~--i~~i~~~~~--~~i--~~~~  217 (410)
T PF04841_consen  144 TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGET--IYIIDENSF--KQI--DSDG  217 (410)
T ss_pred             CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCE--EEEEEcccc--ccc--cCCC
Confidence            3344444332 221111111110000         0000 223334444444444444  332332211  001  1224


Q ss_pred             ceEEEEEccCCCEEEEEeCCCcEEEEECCCce---EEeeccCCCeeEEEEcCCC
Q 042434          355 KVLDLAVTPDGENLISVLSDKDIRILNLGTYA---ERVISEEHPITSLSVSVDC  405 (517)
Q Consensus       355 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~s~~~  405 (517)
                      ++..+++||+|++++.-..+|.+.+.+..-.+   ............+.|.-+.
T Consensus       218 ~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d  271 (410)
T PF04841_consen  218 PIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND  271 (410)
T ss_pred             CeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence            79999999999999999999999888764433   2222223455666666543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.85  E-value=0.00054  Score=66.71  Aligned_cols=148  Identities=14%  Similarity=0.124  Sum_probs=101.6

Q ss_pred             CCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEE-eCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCe
Q 042434          266 HQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHT-FGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNE  344 (517)
Q Consensus       266 h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~  344 (517)
                      |...|.--+++..+++++.|+.-|.+.+|+-..+..... ..+....+..+..+++..++|+|+..|.|.++..+.....
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~  111 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR  111 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence            445566666777899999999999999999766654432 2234555666788888889999999998666665554322


Q ss_pred             e----EeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce------EEeeccCCCeeEEEEcCCCCEEEEEeCC
Q 042434          345 I----KAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA------ERVISEEHPITSLSVSVDCKNFIVNLNS  414 (517)
Q Consensus       345 ~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~i~~~~~s~~~~~l~~~~~d  414 (517)
                      .    ......|...|++++|++++..+++|...|+|..-.+.+..      .........|..+...  ..++++++..
T Consensus       112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~--q~~LLVStl~  189 (726)
T KOG3621|consen  112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL--QSYLLVSTLT  189 (726)
T ss_pred             cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc--cceehHhhhh
Confidence            1    11222235689999999999999999999999998887721      3344455566555544  2345544443


Q ss_pred             C
Q 042434          415 Q  415 (517)
Q Consensus       415 ~  415 (517)
                      .
T Consensus       190 r  190 (726)
T KOG3621|consen  190 R  190 (726)
T ss_pred             h
Confidence            3

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.83  E-value=0.031  Score=56.49  Aligned_cols=233  Identities=13%  Similarity=0.060  Sum_probs=121.4

Q ss_pred             CCCCCEEEEeeCCC------cEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCC-C-----eEEEEECCC
Q 042434          231 SNNGEYLASSSSDC------SAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNA-E-----VLKLWDVET  298 (517)
Q Consensus       231 s~~~~~l~t~~~dg------~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-g-----~i~iwd~~~  298 (517)
                      +..+..++.|+.++      .+..+|..++ .+.....+. +...-.+++.. ++...++||.| |     ++..||..+
T Consensus       282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~-~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~  358 (571)
T KOG4441|consen  282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTN-EWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRT  358 (571)
T ss_pred             CCCCeEEEECCCCCCCcccceeEEecCCcC-cEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCC
Confidence            34456677777663      5777777644 222222222 22223344443 45778888888 3     677888887


Q ss_pred             CcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCcee---EEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCC
Q 042434          299 GICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKG---IFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDK  375 (517)
Q Consensus       299 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~---i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  375 (517)
                      ++-...-.-.......-.-.-+|...++|+.||...   +-.||..+..-..........-..-...-+|...++|+.++
T Consensus       359 ~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~  438 (571)
T KOG4441|consen  359 NQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDG  438 (571)
T ss_pred             CceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCC
Confidence            764432111111111111122688899999987532   55667665443333322221222223334677777887554


Q ss_pred             ------cEEEEECCCceEEeec---cCCCeeEEEEcCCCCEEEEEeCCC-----eEEEEEcCCC-CccceEEeCcccCce
Q 042434          376 ------DIRILNLGTYAERVIS---EEHPITSLSVSVDCKNFIVNLNSQ-----EIHMWDVAGK-WEKPFKYTGHSQNKY  440 (517)
Q Consensus       376 ------~i~i~d~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~d~-----~i~~~d~~~~-~~~~~~~~~~~~~~~  440 (517)
                            ++..||..+..-....   ....-.. ...-++..+++|+.++     ++..||..+. |..+.........  
T Consensus       439 ~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~--  515 (571)
T KOG4441|consen  439 SSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSA--  515 (571)
T ss_pred             CccccceEEEEcCCCCceeecCCcccccccce-EEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccccc--
Confidence                  5788998887622211   1111111 2223567777777766     3677887653 2222212111111  


Q ss_pred             EEEeecCCCCCcEEEEecCCC-----cEEEEecCCCc
Q 042434          441 VIRSCFGGLDGTFIASGSENS-----QIYIWNRRNSK  472 (517)
Q Consensus       441 ~i~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~  472 (517)
                       ...+  .-++...++|+.||     +|..||..+.+
T Consensus       516 -~g~~--~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~  549 (571)
T KOG4441|consen  516 -VGVV--VLGGKLYAVGGFDGNNNLNTVECYDPETDT  549 (571)
T ss_pred             -ccEE--EECCEEEEEecccCccccceeEEcCCCCCc
Confidence             1111  23677888888776     46667665544

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.82  E-value=0.007  Score=57.76  Aligned_cols=227  Identities=12%  Similarity=0.128  Sum_probs=127.5

Q ss_pred             CEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEE-------------------------------------------EEe
Q 042434          269 PVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICK-------------------------------------------HTF  305 (517)
Q Consensus       269 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-------------------------------------------~~~  305 (517)
                      .|+.+.|+++..-|++|...|.|.||.....+..                                           ..+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            5788999999889999999999988865321110                                           112


Q ss_pred             CCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeC--------cCCCceEEEEEcc-----CC---CEEE
Q 042434          306 GDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRG--------TRIPKVLDLAVTP-----DG---ENLI  369 (517)
Q Consensus       306 ~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~--------~~~~~i~~~~~~~-----~~---~~l~  369 (517)
                      ....++|++++.+ |=.+++.|..+|.  +.+.|.++..+.....        .....++++.|+-     |+   -.++
T Consensus        83 ~~~~g~vtal~~S-~iGFvaigy~~G~--l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~  159 (395)
T PF08596_consen   83 DAKQGPVTALKNS-DIGFVAIGYESGS--LVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL  159 (395)
T ss_dssp             ---S-SEEEEEE--BTSEEEEEETTSE--EEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred             eccCCcEeEEecC-CCcEEEEEecCCc--EEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence            2346789999987 5569999999998  8899999876643311        1233577777762     33   3788


Q ss_pred             EEeCCCcEEEEECC--Cce-------EEeeccCCCeeEEE-EcCC-C-------------------CEEEEEeCCCeEEE
Q 042434          370 SVLSDKDIRILNLG--TYA-------ERVISEEHPITSLS-VSVD-C-------------------KNFIVNLNSQEIHM  419 (517)
Q Consensus       370 ~~~~dg~i~i~d~~--~~~-------~~~~~~~~~i~~~~-~s~~-~-------------------~~l~~~~~d~~i~~  419 (517)
                      +|+..|.+.+|.+.  ...       .....+..++..+. ++.+ |                   ..+++...+..+++
T Consensus       160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv  239 (395)
T PF08596_consen  160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV  239 (395)
T ss_dssp             EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred             EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence            99999999999874  111       11113344544444 3222 1                   23566666888999


Q ss_pred             EEcCCCCccceEEeCcccCceEEEeecC----CCCCcEEEEecCCCcEEEEecCCCceeEEecCCC----CCeeEEEecC
Q 042434          420 WDVAGKWEKPFKYTGHSQNKYVIRSCFG----GLDGTFIASGSENSQIYIWNRRNSKPIEILSGHS----MTVNCVSWNP  491 (517)
Q Consensus       420 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~----s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~----~~v~~v~~~~  491 (517)
                      +...+.....+.+ ..  ....-.+++.    ...+..|++-..+|.|++|.+-.-+.+..+.-+.    ..+....+++
T Consensus       240 ~~~~~~k~~~K~~-~~--~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~  316 (395)
T PF08596_consen  240 FKPPKSKGAHKSF-DD--PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISR  316 (395)
T ss_dssp             E-TT---EEEEE--SS---EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-T
T ss_pred             EeCCCCcccceee-cc--ccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECC
Confidence            9987653333333 11  1111111111    2356788889999999999999988887776532    3455677788


Q ss_pred             CCCcEEEEeeC
Q 042434          492 KRPKMLASASD  502 (517)
Q Consensus       492 ~~~~~l~s~~~  502 (517)
                      +| .+++-.|.
T Consensus       317 ~G-di~~~~gp  326 (395)
T PF08596_consen  317 NG-DIFYWTGP  326 (395)
T ss_dssp             TS--EEEE-SS
T ss_pred             CC-CEEEEeCc
Confidence            88 45554443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PHA02713 hypothetical protein; Provisional

Probab=97.82  E-value=0.0032  Score=63.59  Aligned_cols=199  Identities=13%  Similarity=-0.020  Sum_probs=105.5

Q ss_pred             CCCeEEEEeCC------CeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCc---eeEEEEeCCCCeeEee
Q 042434          278 DDTKLLTCGNA------EVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTE---KGIFMCDCDGNEIKAW  348 (517)
Q Consensus       278 ~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~---v~i~~~~~~~~~~~~~  348 (517)
                      ++...+.||.+      ..+..||..+......-.-....-......-+|+..+.||.++.   -.+..||+..+.-...
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~  382 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML  382 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence            56677777754      24778888776543211111111111122236778888887653   2377788776543332


Q ss_pred             eCcCCCceEEEEEccCCCEEEEEeCCC-----------------------cEEEEECCCceEEeec-c-CCCeeEEEEcC
Q 042434          349 RGTRIPKVLDLAVTPDGENLISVLSDK-----------------------DIRILNLGTYAERVIS-E-EHPITSLSVSV  403 (517)
Q Consensus       349 ~~~~~~~i~~~~~~~~~~~l~~~~~dg-----------------------~i~i~d~~~~~~~~~~-~-~~~i~~~~~s~  403 (517)
                      ..............-+|...+.|+.++                       .+..||..+.+-.... . ..........-
T Consensus       383 ~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~  462 (557)
T PHA02713        383 PDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSH  462 (557)
T ss_pred             CCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEE
Confidence            221111111112223677777776542                       4778888876621111 1 11111122233


Q ss_pred             CCCEEEEEeCC------CeEEEEEcCC--CCccceEEeCcccCceEEEeecCCCCCcEEEEecCCC--cEEEEecCCCce
Q 042434          404 DCKNFIVNLNS------QEIHMWDVAG--KWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENS--QIYIWNRRNSKP  473 (517)
Q Consensus       404 ~~~~l~~~~~d------~~i~~~d~~~--~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--~i~iwd~~~~~~  473 (517)
                      +++..++|+.+      ..+..||..+  .|.....+......   ...+  .-+|+..++|+.+|  .+..||..+.+-
T Consensus       463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~---~~~~--~~~~~iyv~Gg~~~~~~~e~yd~~~~~W  537 (557)
T PHA02713        463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA---LHTI--LHDNTIMMLHCYESYMLQDTFNVYTYEW  537 (557)
T ss_pred             CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc---ceeE--EECCEEEEEeeecceeehhhcCcccccc
Confidence            56666777653      2467899875  45554444332222   1111  23788899999888  788888887765


Q ss_pred             eEEecCCC
Q 042434          474 IEILSGHS  481 (517)
Q Consensus       474 ~~~~~~h~  481 (517)
                      ...-+.|.
T Consensus       538 ~~~~~~~~  545 (557)
T PHA02713        538 NHICHQHS  545 (557)
T ss_pred             cchhhhcC
Confidence            55444454

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.81  E-value=0.017  Score=52.98  Aligned_cols=219  Identities=15%  Similarity=0.101  Sum_probs=127.5

Q ss_pred             EECCCCCEE-EEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCC
Q 042434          229 QFSNNGEYL-ASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGD  307 (517)
Q Consensus       229 ~~s~~~~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  307 (517)
                      .|.++...| .+--..+.|.-|+..++..    ..+. +.+.+.++..-..+..|+++..  -+.+++.+++..+..+..
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~----~~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~  103 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKK----RVFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAE  103 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCce----EEEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEecc
Confidence            466766644 4444567788888764432    2222 3444455555445555665433  356677666655333221


Q ss_pred             -----CCCceEEEEEeCCCCeEEEeeC---------CCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeC
Q 042434          308 -----HGFIVSSCAWFPDSKRLVCGSS---------DTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLS  373 (517)
Q Consensus       308 -----~~~~v~~i~~~~~~~~l~~~~~---------d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  373 (517)
                           .......+...|+|.+.++...         ...-.+|.++..+...+....+- ..-+.++||||++.++.+..
T Consensus       104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~-~~~NGla~SpDg~tly~aDT  182 (307)
T COG3386         104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDL-TIPNGLAFSPDGKTLYVADT  182 (307)
T ss_pred             ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcE-EecCceEECCCCCEEEEEeC
Confidence                 1345567788888887766544         11224888887665555554422 35678999999988877766


Q ss_pred             C-CcEEEEECCC--ce-------EEeeccCCCeeEEEEcCCCCEEEEEeCCC-eEEEEEcCCCCccceEEeCcccCceEE
Q 042434          374 D-KDIRILNLGT--YA-------ERVISEEHPITSLSVSVDCKNFIVNLNSQ-EIHMWDVAGKWEKPFKYTGHSQNKYVI  442 (517)
Q Consensus       374 d-g~i~i~d~~~--~~-------~~~~~~~~~i~~~~~s~~~~~l~~~~~d~-~i~~~d~~~~~~~~~~~~~~~~~~~~i  442 (517)
                      . +.|+.|++..  ..       .......+..-.++...+|.+.+++..+| .|..|+...  .....+.-...  ..-
T Consensus       183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG--~l~~~i~lP~~--~~t  258 (307)
T COG3386         183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPDG--KLLGEIKLPVK--RPT  258 (307)
T ss_pred             CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCCC--cEEEEEECCCC--CCc
Confidence            4 7888888762  11       11112345566788888888876555554 899999873  34444433321  223


Q ss_pred             EeecCCCCCcEEEEecC
Q 042434          443 RSCFGGLDGTFIASGSE  459 (517)
Q Consensus       443 ~~~~~s~~~~~l~~~~~  459 (517)
                      .+++..++.+.|++.+.
T Consensus       259 ~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         259 NPAFGGPDLNTLYITSA  275 (307)
T ss_pred             cceEeCCCcCEEEEEec
Confidence            34555666665555443

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.81  E-value=0.004  Score=62.73  Aligned_cols=183  Identities=12%  Similarity=0.103  Sum_probs=103.4

Q ss_pred             cCcEEEEEECCCCCEEEEee------CCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCC-------
Q 042434          222 KNEVWFVQFSNNGEYLASSS------SDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNA-------  288 (517)
Q Consensus       222 ~~~v~~~~~s~~~~~l~t~~------~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-------  288 (517)
                      ...+...++||+|+.+|...      .|+.-.||-...+......  ..+  ...+.-.|+|||..|++.+..       
T Consensus       349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~l--t~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~  424 (591)
T PRK13616        349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQV--LEG--HSLTRPSWSLDADAVWVVVDGNTVVRVI  424 (591)
T ss_pred             ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceee--ecC--CCCCCceECCCCCceEEEecCcceEEEe
Confidence            34678899999999887765      2444455544333322222  222  237889999998888776532       


Q ss_pred             -----CeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEE---EeCCCCeeEe-----eeCcCCCc
Q 042434          289 -----EVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM---CDCDGNEIKA-----WRGTRIPK  355 (517)
Q Consensus       289 -----g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~---~~~~~~~~~~-----~~~~~~~~  355 (517)
                           +.+.+.++..+....   .....|..+.|+|||..++... ++.  +++   ....+.....     ........
T Consensus       425 ~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~--v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~  498 (591)
T PRK13616        425 RDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGK--VYLAVVEQTEDGQYALTNPREVGPGLGDT  498 (591)
T ss_pred             ccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCE--EEEEEEEeCCCCceeecccEEeecccCCc
Confidence                 233333444333322   2356799999999999988876 455  554   3333333221     12222223


Q ss_pred             eEEEEEccCCCEEEEEeCCCc--EEEEECCCceEEeecc---CCCeeEEEEcCCCCEEEEEeCCCeE
Q 042434          356 VLDLAVTPDGENLISVLSDKD--IRILNLGTYAERVISE---EHPITSLSVSVDCKNFIVNLNSQEI  417 (517)
Q Consensus       356 i~~~~~~~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~---~~~i~~~~~s~~~~~l~~~~~d~~i  417 (517)
                      +.++.|..++..+ ++..++.  +...++..........   ..++..++-+++  .+++...++.+
T Consensus       499 ~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~  562 (591)
T PRK13616        499 AVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVL  562 (591)
T ss_pred             cccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceE
Confidence            6789999999855 5444443  4444444433222122   345666666652  45555555533

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.81  E-value=0.0035  Score=64.14  Aligned_cols=194  Identities=18%  Similarity=0.186  Sum_probs=116.1

Q ss_pred             ccCcEEEEEECC--CCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECC--------CCCeEEEE-eCCC
Q 042434          221 HKNEVWFVQFSN--NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP--------DDTKLLTC-GNAE  289 (517)
Q Consensus       221 h~~~v~~~~~s~--~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~--------~~~~l~s~-~~dg  289 (517)
                      +.+...+++...  |..+++=|+   .|-|+.......+.....+..-.. ...-.|.|        +.+.|+.. ....
T Consensus       429 ~~~~n~~Lavg~k~DrSfVvRg~---~igVFk~~~~~~l~f~t~i~~i~~-~~g~~~~P~k~mL~~~d~~mil~~~~~~~  504 (794)
T PF08553_consen  429 DGEKNSSLAVGYKNDRSFVVRGS---KIGVFKNTDDDGLEFSTAISNIST-PKGKNFTPKKAMLHDQDRNMILLDPNNPN  504 (794)
T ss_pred             CCCccceeEeeeccCceEEECCC---cEeEEECCCCCceeeeEEeccccc-CCCcccCcchhhhhccccceEeecCCCCC
Confidence            345555666653  444444332   477887653333333322211100 00112333        33444443 3456


Q ss_pred             eEEEEECCCCcEEEEeCCCCCc-eEEEEEeC-----CCCeEEEeeCCCceeEEEEeCCC--CeeEeeeC---cCCCceEE
Q 042434          290 VLKLWDVETGICKHTFGDHGFI-VSSCAWFP-----DSKRLVCGSSDTEKGIFMCDCDG--NEIKAWRG---TRIPKVLD  358 (517)
Q Consensus       290 ~i~iwd~~~~~~~~~~~~~~~~-v~~i~~~~-----~~~~l~~~~~d~~v~i~~~~~~~--~~~~~~~~---~~~~~i~~  358 (517)
                      .|.-.|++.|+.+..+..+... |..++-..     +....+.|-.+..  ++.||++-  ..+.....   .......|
T Consensus       505 ~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~--lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~  582 (794)
T PF08553_consen  505 KLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNS--LFRIDPRLSGNKLVDSQSKQYSSKNNFSC  582 (794)
T ss_pred             ceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCc--eEEeccCCCCCceeeccccccccCCCceE
Confidence            8999999999999999877543 55544321     1234455656666  99999873  22221111   12235777


Q ss_pred             EEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEc
Q 042434          359 LAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDV  422 (517)
Q Consensus       359 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~  422 (517)
                      ++-+.+| +||+|+.+|.||+||--...  ....+.+.+|..+..+.||+++++.+. ..+.+++.
T Consensus       583 ~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t  646 (794)
T PF08553_consen  583 FATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT  646 (794)
T ss_pred             EEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence            7777766 78999999999999954333  334456889999999999999887664 45666664

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PHA02713 hypothetical protein; Provisional

Probab=97.81  E-value=0.0039  Score=62.99  Aligned_cols=217  Identities=7%  Similarity=0.056  Sum_probs=111.3

Q ss_pred             eEEEEECCCCcEEEEeCCCCCce-EEEEEeCCCCeEEEeeCC-C---ceeEEEEeCCCCeeEeeeCcCCCceEEEEEccC
Q 042434          290 VLKLWDVETGICKHTFGDHGFIV-SSCAWFPDSKRLVCGSSD-T---EKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPD  364 (517)
Q Consensus       290 ~i~iwd~~~~~~~~~~~~~~~~v-~~i~~~~~~~~l~~~~~d-~---~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  364 (517)
                      .+..||..+++....-.-..... .+++. -++..++.|+.+ +   .-.++.+|+..+.-.................-+
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~  351 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIINYASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVID  351 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccceEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEEC
Confidence            46677777665332111111111 12222 366777777754 1   123788888766443332222112122223346


Q ss_pred             CCEEEEEeCCC-----cEEEEECCCce-EEeeccCCCee-EEEEcCCCCEEEEEeCC-----------------------
Q 042434          365 GENLISVLSDK-----DIRILNLGTYA-ERVISEEHPIT-SLSVSVDCKNFIVNLNS-----------------------  414 (517)
Q Consensus       365 ~~~l~~~~~dg-----~i~i~d~~~~~-~~~~~~~~~i~-~~~~s~~~~~l~~~~~d-----------------------  414 (517)
                      |+..+.|+.++     .+..||..+.. ........+.. .....-+++..++|+.+                       
T Consensus       352 g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~  431 (557)
T PHA02713        352 DTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSS  431 (557)
T ss_pred             CEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCccccccccccccccccccccccc
Confidence            77777787654     48889988766 22111111111 11122366777777654                       


Q ss_pred             CeEEEEEcCCC-CccceEEeCcccCceEEEeecCCCCCcEEEEecCCC------cEEEEecCC-C--ceeEEecCCCCCe
Q 042434          415 QEIHMWDVAGK-WEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENS------QIYIWNRRN-S--KPIEILSGHSMTV  484 (517)
Q Consensus       415 ~~i~~~d~~~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg------~i~iwd~~~-~--~~~~~~~~h~~~v  484 (517)
                      ..+..||..+. |.....+...... ..+  +  .-+|+..+.|+.++      .+..||..+ .  +.+..++......
T Consensus       432 ~~ve~YDP~td~W~~v~~m~~~r~~-~~~--~--~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~  506 (557)
T PHA02713        432 NKVIRYDTVNNIWETLPNFWTGTIR-PGV--V--SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSAL  506 (557)
T ss_pred             ceEEEECCCCCeEeecCCCCccccc-CcE--E--EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccc
Confidence            24677887543 3322222111111 011  1  23677777777542      467899876 3  4445554433333


Q ss_pred             eEEEecCCCCcEEEEeeCCC--cEEEeCCCCCC
Q 042434          485 NCVSWNPKRPKMLASASDDH--TIRIWGPCQSS  515 (517)
Q Consensus       485 ~~v~~~~~~~~~l~s~~~dg--~v~iw~~~~~~  515 (517)
                      ..++.  ++ .+.+.||.||  .+-.||+.+.+
T Consensus       507 ~~~~~--~~-~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        507 HTILH--DN-TIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             eeEEE--CC-EEEEEeeecceeehhhcCccccc
Confidence            33333  45 7999999998  77788887653

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.79  E-value=0.0074  Score=56.67  Aligned_cols=213  Identities=16%  Similarity=0.179  Sum_probs=115.5

Q ss_pred             CeEEEEECCCCcEEEEeC-CCCCceEEEEE---eCC----CCeEEEeeC----------CCceeEEEEeCCCC-----ee
Q 042434          289 EVLKLWDVETGICKHTFG-DHGFIVSSCAW---FPD----SKRLVCGSS----------DTEKGIFMCDCDGN-----EI  345 (517)
Q Consensus       289 g~i~iwd~~~~~~~~~~~-~~~~~v~~i~~---~~~----~~~l~~~~~----------d~~v~i~~~~~~~~-----~~  345 (517)
                      +.|++.|..+.+.+..+. .....+.+++.   ..+    ..+|++|+.          .|.  +++++....     .+
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gr--i~v~~i~~~~~~~~~l   79 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGR--ILVFEISESPENNFKL   79 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EE--EEEEEECSS-----EE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcE--EEEEEEEcccccceEE
Confidence            367888888887776554 22344554433   322    457777653          144  666666552     33


Q ss_pred             Eee-eCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEc
Q 042434          346 KAW-RGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDV  422 (517)
Q Consensus       346 ~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~  422 (517)
                      ... .....++|.+++-- ++ .++++ .++.|.+|++....  ........++...+....++++++|.....+.++..
T Consensus        80 ~~i~~~~~~g~V~ai~~~-~~-~lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~  156 (321)
T PF03178_consen   80 KLIHSTEVKGPVTAICSF-NG-RLVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRY  156 (321)
T ss_dssp             EEEEEEEESS-EEEEEEE-TT-EEEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEE
T ss_pred             EEEEEEeecCcceEhhhh-CC-EEEEe-ecCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEE
Confidence            322 22234578888766 33 44443 45889999987765  222222233344444444669999998888888866


Q ss_pred             CCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCC-------Cc--e--eEEecCCCCCeeEE---E
Q 042434          423 AGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRN-------SK--P--IEILSGHSMTVNCV---S  488 (517)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~-------~~--~--~~~~~~h~~~v~~v---~  488 (517)
                      +........+.......+...+.+. ++++.++++..+|.+.++....       +.  +  ...+. ....|+++   .
T Consensus       157 ~~~~~~l~~va~d~~~~~v~~~~~l-~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~  234 (321)
T PF03178_consen  157 DEENNKLILVARDYQPRWVTAAEFL-VDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGS  234 (321)
T ss_dssp             ETTTE-EEEEEEESS-BEEEEEEEE--SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--
T ss_pred             EccCCEEEEEEecCCCccEEEEEEe-cCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEE
Confidence            5432333333333333444444443 3446899999999999997652       22  2  22222 24567777   5


Q ss_pred             ecC--CCCc-----EEEEeeCCCcEEE
Q 042434          489 WNP--KRPK-----MLASASDDHTIRI  508 (517)
Q Consensus       489 ~~~--~~~~-----~l~s~~~dg~v~i  508 (517)
                      +.|  .+..     .++-++.+|.|.+
T Consensus       235 l~~~~~~~~~~~~~~i~~~T~~G~Ig~  261 (321)
T PF03178_consen  235 LIPRSGSSESPNRPQILYGTVDGSIGV  261 (321)
T ss_dssp             SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred             eeecCCCCcccccceEEEEecCCEEEE
Confidence            555  2222     4778888998874

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>smart00320 WD40 WD40 repeats

Probab=97.78  E-value=6.3e-05  Score=44.75  Aligned_cols=38  Identities=39%  Similarity=0.631  Sum_probs=34.4

Q ss_pred             ccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEE
Q 042434          213 ETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWK  250 (517)
Q Consensus       213 ~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~  250 (517)
                      ++...+..|...|+++.|++++.++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            45677788999999999999999999999999999995

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.71  E-value=0.018  Score=48.77  Aligned_cols=219  Identities=12%  Similarity=0.083  Sum_probs=116.6

Q ss_pred             CeEEEEeCCCeEEEEECCCCcEEE-EeCCCCCceEEEEEeC-CCC-eEEEeeCCCceeEEEEeCCCCeeEeeeC------
Q 042434          280 TKLLTCGNAEVLKLWDVETGICKH-TFGDHGFIVSSCAWFP-DSK-RLVCGSSDTEKGIFMCDCDGNEIKAWRG------  350 (517)
Q Consensus       280 ~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~i~~~~-~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~~~------  350 (517)
                      .++.+--..|.|.-||+.+.+..+ ++.+.  ++.++.+-- ++. .++++.. ....+..||-..........      
T Consensus        28 sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p--~~ag~ilpv~~~~q~~~v~~G-~kf~i~nwd~~~~~a~v~~t~~ev~~  104 (310)
T KOG4499|consen   28 SLLYVDIEAGEVHRYDIEQNKVYRAKIEGP--PSAGFILPVEGGPQEFAVGCG-SKFVIVNWDGVSESAKVYRTLFEVQP  104 (310)
T ss_pred             eEEEEEeccCceehhhhhhhheEEEEEecC--cceeEEEEecCCCceEEEeec-ceEEEEEcccccceeeeeeeccccCc
Confidence            344444445667778887755433 22222  123333322 222 2222222 22236667643322221111      


Q ss_pred             -cCCCceEEEEEccCCCEEEEEeC---------CCcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEE-eCCCeEEE
Q 042434          351 -TRIPKVLDLAVTPDGENLISVLS---------DKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVN-LNSQEIHM  419 (517)
Q Consensus       351 -~~~~~i~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~d~~i~~  419 (517)
                       ....+.++-..+|+|++++-.-.         .|.++.|-...........-.-.+.++|+.+.+.+... +.+-.|.-
T Consensus       105 d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a  184 (310)
T KOG4499|consen  105 DRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDA  184 (310)
T ss_pred             hHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEee
Confidence             11235666778999998442222         24566665544334444444445678898887766554 55667877


Q ss_pred             EE--cCCCC----ccceEEeCccc-CceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCC
Q 042434          420 WD--VAGKW----EKPFKYTGHSQ-NKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPK  492 (517)
Q Consensus       420 ~d--~~~~~----~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~  492 (517)
                      ||  ..++.    ..+..+..... ......-++...+|++.++.-..|+|...|..+|+.+.++.-....|++++|--.
T Consensus       185 ~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk  264 (310)
T KOG4499|consen  185 YDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK  264 (310)
T ss_pred             eecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence            87  33331    12222221100 0000001111447788888888899999999999999999988999999999643


Q ss_pred             -CCcEEEEee
Q 042434          493 -RPKMLASAS  501 (517)
Q Consensus       493 -~~~~l~s~~  501 (517)
                       -.-+.+|+.
T Consensus       265 n~d~~yvT~a  274 (310)
T KOG4499|consen  265 NLDILYVTTA  274 (310)
T ss_pred             CccEEEEEeh
Confidence             212444444

>smart00320 WD40 WD40 repeats

Probab=97.71  E-value=0.00012  Score=43.51  Aligned_cols=39  Identities=44%  Similarity=0.753  Sum_probs=34.4

Q ss_pred             CceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeC
Q 042434          471 SKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWG  510 (517)
Q Consensus       471 ~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~  510 (517)
                      ++++..+..|...|.++.|++.+ .++++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence            45667777899999999999988 7999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.68  E-value=0.0013  Score=67.35  Aligned_cols=103  Identities=17%  Similarity=0.219  Sum_probs=77.8

Q ss_pred             CCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCce
Q 042434          233 NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIV  312 (517)
Q Consensus       233 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v  312 (517)
                      .+..++.|+..|.+-..|+...  +.+...-..-.++|++++|+.+|..++.|-.+|.|.+||+..++..+.+..+..+.
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~  175 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPV  175 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCcc
Confidence            4557888999999988887532  22222223346899999999999999999999999999999999998887776655


Q ss_pred             EEE---EEeCCCCeEEEeeCCCceeEEEEe
Q 042434          313 SSC---AWFPDSKRLVCGSSDTEKGIFMCD  339 (517)
Q Consensus       313 ~~i---~~~~~~~~l~~~~~d~~v~i~~~~  339 (517)
                      +++   .+..++..++++...|.  +|...
T Consensus       176 t~vi~v~~t~~nS~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  176 TGVIFVGRTSQNSKLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             ceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence            554   44556667888888887  66443

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.67  E-value=0.0052  Score=45.85  Aligned_cols=100  Identities=18%  Similarity=0.241  Sum_probs=66.4

Q ss_pred             EEEEEECC---CC-CeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCee
Q 042434          270 VSFVAWSP---DD-TKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEI  345 (517)
Q Consensus       270 v~~l~~s~---~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~  345 (517)
                      |+++++..   || +.|++|+.|..|++|+  ..+.+..+ .....|+++.-... ..|+.+..+|+|.+|  +.   ..
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei-~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY--~~---~~   72 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEI-TETDKVTSLCSLGG-GRFAYALANGTVGVY--DR---SQ   72 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEE-ecccceEEEEEcCC-CEEEEEecCCEEEEE--eC---cc
Confidence            56666544   33 6899999999999998  44666666 34556777776655 679999999995555  32   33


Q ss_pred             EeeeCcCCCceEEEEEcc---CC-CEEEEEeCCCcEE
Q 042434          346 KAWRGTRIPKVLDLAVTP---DG-ENLISVLSDKDIR  378 (517)
Q Consensus       346 ~~~~~~~~~~i~~~~~~~---~~-~~l~~~~~dg~i~  378 (517)
                      +.|+......+.++.+..   || ..|++|-.+|.|-
T Consensus        73 RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   73 RLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            444444444566665543   22 2688888888764

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.65  E-value=0.007  Score=61.02  Aligned_cols=186  Identities=11%  Similarity=0.061  Sum_probs=105.2

Q ss_pred             CceEEEEEeCCCCeEEEee------CCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCC---------
Q 042434          310 FIVSSCAWFPDSKRLVCGS------SDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSD---------  374 (517)
Q Consensus       310 ~~v~~i~~~~~~~~l~~~~------~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------  374 (517)
                      ..+.+.+.+|+|+.++...      .|..-.+|+.+..+.. ..+....  ....-.|+|+|..+++....         
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~  426 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRD  426 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eeeecCC--CCCCceECCCCCceEEEecCcceEEEecc
Confidence            4678899999999888766      3445568888875544 3333322  37778999998877766432         


Q ss_pred             ---CcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEE---EcCCCCccc---eEEeCcccCceEEEee
Q 042434          375 ---KDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMW---DVAGKWEKP---FKYTGHSQNKYVIRSC  445 (517)
Q Consensus       375 ---g~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~---d~~~~~~~~---~~~~~~~~~~~~i~~~  445 (517)
                         +.+.+.++..+.... .....|..+.|||||..++... ++.|++-   ....+...+   ..+.....  .....+
T Consensus       427 ~~~gql~~~~vd~ge~~~-~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~--~~~~~l  502 (591)
T PRK13616        427 PATGQLARTPVDASAVAS-RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG--DTAVSL  502 (591)
T ss_pred             CCCceEEEEeccCchhhh-ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC--Cccccc
Confidence               234334444433221 3356799999999999988876 4677763   322331111   01111111  112334


Q ss_pred             cCCCCCcEEEEecCCCcEEEEecCC-CceeEEecC--CCCCeeEEEecCCCCcEEEEeeCCCcE
Q 042434          446 FGGLDGTFIASGSENSQIYIWNRRN-SKPIEILSG--HSMTVNCVSWNPKRPKMLASASDDHTI  506 (517)
Q Consensus       446 ~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~--h~~~v~~v~~~~~~~~~l~s~~~dg~v  506 (517)
                      .|..++.++ ++..++.-.+|.+.- |.....+.+  ....+.+|+=+++  . ++....+|.+
T Consensus       503 ~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~-iyv~~~~g~~  562 (591)
T PRK13616        503 DWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--T-VYVTDARAVL  562 (591)
T ss_pred             eEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--e-EEEEcCCceE
Confidence            457777754 555555444554332 222222233  2567778887763  2 4444556643

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.63  E-value=0.049  Score=49.71  Aligned_cols=275  Identities=11%  Similarity=0.046  Sum_probs=131.5

Q ss_pred             ccCcEEEEEECCCCCEEEEeeCCCcEEEEEecC-CCeeeEEEEeccC--CCCEEEEEECCCCCeEEEEeCCCeEEEEECC
Q 042434          221 HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLE-DSKLTLKHTLRSH--QNPVSFVAWSPDDTKLLTCGNAEVLKLWDVE  297 (517)
Q Consensus       221 h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~-~~~~~~~~~~~~h--~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~  297 (517)
                      -...+.+|.|..+..-.++|. .+.  |+...+ +........-...  .-...++.|..+ ..+++ +..|. .+...+
T Consensus        15 t~~~l~dV~F~d~~~G~~VG~-~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~iv-G~~g~-ll~T~D   88 (302)
T PF14870_consen   15 TDKPLLDVAFVDPNHGWAVGA-YGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIV-GEPGL-LLHTTD   88 (302)
T ss_dssp             -SS-EEEEEESSSS-EEEEET-TTE--EEEESSTTSS-EE-----S-----EEEEEEEETT-EEEEE-EETTE-EEEESS
T ss_pred             CCCceEEEEEecCCEEEEEec-CCE--EEEECCCCccccccccCCCccceeeEEEEEecCC-ceEEE-cCCce-EEEecC
Confidence            355888999986566666654 454  344433 3444433211111  123667777543 33444 44553 333344


Q ss_pred             CCcEEEEeC---CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCC
Q 042434          298 TGICKHTFG---DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSD  374 (517)
Q Consensus       298 ~~~~~~~~~---~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  374 (517)
                      .|+.-..+.   .-......+....++ ....++..|.  |+.-.-.+..-........+.+..+.-+++|++++++...
T Consensus        89 gG~tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~~~~G~--iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G  165 (302)
T PF14870_consen   89 GGKTWERVPLSSKLPGSPFGITALGDG-SAELAGDRGA--IYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRG  165 (302)
T ss_dssp             TTSS-EE----TT-SS-EEEEEEEETT-EEEEEETT----EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTS
T ss_pred             CCCCcEEeecCCCCCCCeeEEEEcCCC-cEEEEcCCCc--EEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcc
Confidence            454333321   122333444444444 3343455566  7766666655555555555678899999999998888777


Q ss_pred             CcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcc-ceEEeCcccCceEEEeecCCCCC
Q 042434          375 KDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEK-PFKYTGHSQNKYVIRSCFGGLDG  451 (517)
Q Consensus       375 g~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~  451 (517)
                      ....-||.....  .........+..+.|.|++...+++ ..|.|++=+....... ...........+.+-.+.+.+++
T Consensus       166 ~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~  244 (302)
T PF14870_consen  166 NFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPN  244 (302)
T ss_dssp             SEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS
T ss_pred             cEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCC
Confidence            777788876433  5555567889999999997766644 8888888773221011 11111111223334444556777


Q ss_pred             cEEEEecCCCcEEEEecCCCceeEEec---CCCCCeeEEEecCCCCcEEEEeeCCCcEEEe
Q 042434          452 TFIASGSENSQIYIWNRRNSKPIEILS---GHSMTVNCVSWNPKRPKMLASASDDHTIRIW  509 (517)
Q Consensus       452 ~~l~~~~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw  509 (517)
                      ...++|+ .|.+ +.....|+.=..-+   .-.+..+.|.|.+..  .-...+.+|.|.-|
T Consensus       245 ~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~--~gf~lG~~G~ll~~  301 (302)
T PF14870_consen  245 EIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPD--KGFVLGQDGVLLRY  301 (302)
T ss_dssp             -EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETT--EEEEE-STTEEEEE
T ss_pred             CEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCC--ceEEECCCcEEEEe
Confidence            6666665 4444 33445555433332   234568888887654  34556788877655

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.61  E-value=0.04  Score=48.69  Aligned_cols=163  Identities=15%  Similarity=0.136  Sum_probs=107.4

Q ss_pred             eccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCC-CCceEEEEEeCCCCeEEEeeCCCceeEEEEeCC
Q 042434          263 LRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDH-GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD  341 (517)
Q Consensus       263 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~  341 (517)
                      +.+-...|.++.|+|+.+.|++......-.||=-.+|+.++++.-. -.....+.+..++.+.++--.++.+.++..+.+
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence            3445566999999999999999888888888877789999887522 233456888888888888888888555556655


Q ss_pred             CCeeEe----ee----CcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceEEee-----c-------cCCCeeEEEE
Q 042434          342 GNEIKA----WR----GTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVI-----S-------EEHPITSLSV  401 (517)
Q Consensus       342 ~~~~~~----~~----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----~-------~~~~i~~~~~  401 (517)
                      +..+..    +.    .+.......++|.|....++.+-.-.-+.||..........     .       .-..+.++.|
T Consensus       161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~  240 (316)
T COG3204         161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF  240 (316)
T ss_pred             ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence            433211    11    11133577899999999888888877777776653321111     0       1124667777


Q ss_pred             cCCC-CEEEEEeCCCeEEEEEcCCC
Q 042434          402 SVDC-KNFIVNLNSQEIHMWDVAGK  425 (517)
Q Consensus       402 s~~~-~~l~~~~~d~~i~~~d~~~~  425 (517)
                      ++.. ..++.+..++.+.-.|..+.
T Consensus       241 ~~~~~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         241 NAITNSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             cCCCCcEEEEecCCceEEEEecCCC
Confidence            7644 44445555666666666554

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.58  E-value=0.00016  Score=60.62  Aligned_cols=143  Identities=15%  Similarity=0.130  Sum_probs=88.5

Q ss_pred             EEEEeCCCcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEe-CcccCceEEEeec
Q 042434          368 LISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYT-GHSQNKYVIRSCF  446 (517)
Q Consensus       368 l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~~~~~i~~~~  446 (517)
                      +...+.+|.|+-++++..+.........-.....-.-+..+++|+.+|.|++|...........+. +....   ...+.
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i---~~~Ip  109 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSERFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESI---DLGIP  109 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhhhhhhcceeecccCceEEeecccceEEEecCCccchHHHhhhcccccc---eeccc
Confidence            444566777777777654411111110000022223456799999999999998753211111111 11111   11122


Q ss_pred             CCCCCcEEEEecCCCcEEEEecCCCceeEEecCCC-CCeeEEEecCCCCcEEEEe--eCCCcEEEeCCCCC
Q 042434          447 GGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHS-MTVNCVSWNPKRPKMLASA--SDDHTIRIWGPCQS  514 (517)
Q Consensus       447 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~v~~~~~~~~~l~s~--~~dg~v~iw~~~~~  514 (517)
                      ...++.+..+++.||.|+.|++.-++.+.....|. .++.....+..+ .+++.+  |.|..++.|++..-
T Consensus       110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd-~~i~~a~~S~d~~~k~W~ve~~  179 (238)
T KOG2444|consen  110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSD-EFLKIADTSHDRVLKKWNVEKI  179 (238)
T ss_pred             cccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCC-ceEEeeccccchhhhhcchhhh
Confidence            23456789999999999999999999888888887 666666666666 577777  88888888988653

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.54  E-value=0.015  Score=50.89  Aligned_cols=199  Identities=12%  Similarity=0.027  Sum_probs=121.3

Q ss_pred             cEEEeccccCcEEEEEECCCCCEEEEeeC-----CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeC-
Q 042434          214 TVQILTEHKNEVWFVQFSNNGEYLASSSS-----DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGN-  287 (517)
Q Consensus       214 ~~~~l~~h~~~v~~~~~s~~~~~l~t~~~-----dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-  287 (517)
                      .-+.+-||.      .|||||.+|...-.     -|.|-|||..  ..+..+..+..|.-.-..+.|.+||+.++.+.. 
T Consensus       111 ~~RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd~r--~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGG  182 (366)
T COG3490         111 EGRHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYDAR--EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGG  182 (366)
T ss_pred             cCceeeccc------ccCCCCcEEEeecCCCCCCCceEEEEecc--cccceecccccCCcCcceeEEecCCcEEEEeCCc
Confidence            334455554      59999999987643     3779999996  556777788888888899999999999987643 


Q ss_pred             -----C------------CeEEEEECCCCcEEEEe--C--CCCCceEEEEEeCCCCeEEEeeCCCce----eEEEEeCCC
Q 042434          288 -----A------------EVLKLWDVETGICKHTF--G--DHGFIVSSCAWFPDSKRLVCGSSDTEK----GIFMCDCDG  342 (517)
Q Consensus       288 -----d------------g~i~iwd~~~~~~~~~~--~--~~~~~v~~i~~~~~~~~l~~~~~d~~v----~i~~~~~~~  342 (517)
                           |            -++.+.|..+|+.+.+.  .  .+...|..++..+||...+.+-..|.-    -+.-.-..+
T Consensus       183 IethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g  262 (366)
T COG3490         183 IETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKG  262 (366)
T ss_pred             eecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCC
Confidence                 1            13445555566554332  2  345568888888888766655443320    011111122


Q ss_pred             CeeEeeeCcC------CCceEEEEEccCCCEEEEEeCCC-cEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCC
Q 042434          343 NEIKAWRGTR------IPKVLDLAVTPDGENLISVLSDK-DIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQ  415 (517)
Q Consensus       343 ~~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~  415 (517)
                      +.+..+....      ...|-+++.+.+..+++..+-.| ...+||..++.......-.....+  .+...-+++.+.+|
T Consensus       263 ~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~daaGv--a~~~~gf~vssg~G  340 (366)
T COG3490         263 EPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPDAAGV--AAAKGGFAVSSGQG  340 (366)
T ss_pred             CcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccccccc--eeccCceEEecCCc
Confidence            3332222111      12466778877666666555544 577899998874443332222223  33445577788888


Q ss_pred             eEEEEEc
Q 042434          416 EIHMWDV  422 (517)
Q Consensus       416 ~i~~~d~  422 (517)
                      .+.++.-
T Consensus       341 ~~~~~s~  347 (366)
T COG3490         341 RIIFYSR  347 (366)
T ss_pred             eEEeccc
Confidence            8887753

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.50  E-value=0.046  Score=50.06  Aligned_cols=222  Identities=16%  Similarity=0.127  Sum_probs=120.8

Q ss_pred             CCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEe---------
Q 042434          277 PDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKA---------  347 (517)
Q Consensus       277 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~---------  347 (517)
                      ..++.|+.|+.+| +.+++.......... .+...|..+...|+-+.+++-+. +.  ++.+++..-....         
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i-~~~~~I~ql~vl~~~~~llvLsd-~~--l~~~~L~~l~~~~~~~~~~~~~   79 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRI-LKLSSITQLSVLPELNLLLVLSD-GQ--LYVYDLDSLEPVSTSAPLAFPK   79 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeE-eecceEEEEEEecccCEEEEEcC-Cc--cEEEEchhhccccccccccccc
Confidence            3578899998888 899998333222222 22333999999998777776654 77  6666654211111         


Q ss_pred             -----eeCcCCCceEEEE--EccCCCEEEEEeCCCcEEEEECCCc------eEEeeccCCCeeEEEEcCCCCEEEEEeCC
Q 042434          348 -----WRGTRIPKVLDLA--VTPDGENLISVLSDKDIRILNLGTY------AERVISEEHPITSLSVSVDCKNFIVNLNS  414 (517)
Q Consensus       348 -----~~~~~~~~i~~~~--~~~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  414 (517)
                           ........+..++  -...+...++......|.+|.....      ..........+..++|.  ++.++++..+
T Consensus        80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~  157 (275)
T PF00780_consen   80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSK  157 (275)
T ss_pred             cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCC
Confidence                 0111112344444  2233444444555568888877552      23445566788899998  5677777644


Q ss_pred             CeEEEEEcCCCCccceEEe--Ccc-------cCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeE--EecCCCCC
Q 042434          415 QEIHMWDVAGKWEKPFKYT--GHS-------QNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIE--ILSGHSMT  483 (517)
Q Consensus       415 ~~i~~~d~~~~~~~~~~~~--~~~-------~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~h~~~  483 (517)
                       ...+.|+.++ .....+.  ...       .....+.... -+++.+|++.  |..-.+.|. .|++..  .+. -...
T Consensus       158 -~f~~idl~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~-W~~~  230 (275)
T PF00780_consen  158 -GFYLIDLNTG-SPSELLDPSDSSSSFKSRNSSSKPLGIFQ-LSDNEFLLCY--DNIGVFVNK-NGEPSRKSTIQ-WSSA  230 (275)
T ss_pred             -ceEEEecCCC-CceEEeCccCCcchhhhcccCCCceEEEE-eCCceEEEEe--cceEEEEcC-CCCcCcccEEE-cCCc
Confidence             4788888754 2211111  100       0111122222 2345666654  222333343 454443  222 2345


Q ss_pred             eeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434          484 VNCVSWNPKRPKMLASASDDHTIRIWGPCQSSE  516 (517)
Q Consensus       484 v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~  516 (517)
                      +.++++.  .+ +++..+. +.|-||++.+++.
T Consensus       231 p~~~~~~--~p-yli~~~~-~~iEV~~~~~~~l  259 (275)
T PF00780_consen  231 PQSVAYS--SP-YLIAFSS-NSIEVRSLETGEL  259 (275)
T ss_pred             hhEEEEE--CC-EEEEECC-CEEEEEECcCCcE
Confidence            6677774  33 4544444 4599999998864

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.47  E-value=0.15  Score=51.22  Aligned_cols=55  Identities=7%  Similarity=0.032  Sum_probs=36.8

Q ss_pred             CcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCCC
Q 042434          461 SQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSEV  517 (517)
Q Consensus       461 g~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~v  517 (517)
                      |.|.-+|+.+|+.+-..+.......+.... .+ .+++.++.||.++.+|.++|+++
T Consensus       441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t-~g-~lvf~g~~~G~l~a~D~~TGe~l  495 (527)
T TIGR03075       441 GSLIAWDPITGKIVWEHKEDFPLWGGVLAT-AG-DLVFYGTLEGYFKAFDAKTGEEL  495 (527)
T ss_pred             eeEEEEeCCCCceeeEecCCCCCCCcceEE-CC-cEEEEECCCCeEEEEECCCCCEe
Confidence            467788888888777665322212222122 33 46777888999999999999864

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.46  E-value=0.11  Score=49.60  Aligned_cols=84  Identities=12%  Similarity=0.071  Sum_probs=56.2

Q ss_pred             CeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCC---------------Cc-EEEEec
Q 042434          395 PITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLD---------------GT-FIASGS  458 (517)
Q Consensus       395 ~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~---------------~~-~l~~~~  458 (517)
                      .+.+++.+|++++.++...-|.|.++|+... ..++.++|........-.+.-..+               .. +++-+-
T Consensus       309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~-~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap  387 (415)
T PF14655_consen  309 EGESICLSPSGRLAAVTDSLGRVLLIDVARG-IVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP  387 (415)
T ss_pred             eEEEEEECCCCCEEEEEcCCCcEEEEECCCC-hhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence            4778999999999888888899999999876 566666665543222111110000               11 234456


Q ss_pred             CCCcEEEEecCCCceeEEecC
Q 042434          459 ENSQIYIWNRRNSKPIEILSG  479 (517)
Q Consensus       459 ~dg~i~iwd~~~~~~~~~~~~  479 (517)
                      .-|.|.||.+++|..+..+..
T Consensus       388 rRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  388 RRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             cCCeEEEEecCCCCEEEEEEe
Confidence            688999999998887776653

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.45  E-value=0.0017  Score=66.44  Aligned_cols=136  Identities=13%  Similarity=0.135  Sum_probs=84.6

Q ss_pred             CCCcEEEEECCCce-EEeeccCCCeeEEEEcCC-------CCEEEEEeCCCeEEEEEcCCCCccceEEeCcc-cCceEEE
Q 042434          373 SDKDIRILNLGTYA-ERVISEEHPITSLSVSVD-------CKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHS-QNKYVIR  443 (517)
Q Consensus       373 ~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~-------~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~~~~~i~  443 (517)
                      ....|+-.|+..++ .........+.-..+.|+       ....++|-.++.+..||.+-....+..-..+. .......
T Consensus       502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs  581 (794)
T PF08553_consen  502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS  581 (794)
T ss_pred             CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence            45789999999888 222222223334455553       33467888899999999986432222111111 1122244


Q ss_pred             eecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCC
Q 042434          444 SCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGP  511 (517)
Q Consensus       444 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~  511 (517)
                      |++-+. ..+||+|+.+|.||+||.-..+....+++-..+|.+|..+.||..+|+||  +..+.+++.
T Consensus       582 ~~aTt~-~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc--~tyLlLi~t  646 (794)
T PF08553_consen  582 CFATTE-DGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC--KTYLLLIDT  646 (794)
T ss_pred             EEEecC-CceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee--cceEEEEEE
Confidence            444344 45899999999999999543333444567789999999999996555555  345555554

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.39  E-value=0.004  Score=58.92  Aligned_cols=140  Identities=19%  Similarity=0.228  Sum_probs=94.8

Q ss_pred             CCCeEE-EEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCC-------eEEEeeCCCceeEEEEeCC--CC-eeE
Q 042434          278 DDTKLL-TCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSK-------RLVCGSSDTEKGIFMCDCD--GN-EIK  346 (517)
Q Consensus       278 ~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~-------~l~~~~~d~~v~i~~~~~~--~~-~~~  346 (517)
                      +.++|+ ++.....++-.|++.|+.+..+..+.. |.-+.+.|+.+       .-+.|-.+..  |+.||++  +. .+.
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~--vfriDpRv~~~~kl~  420 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNS--VFRIDPRVQGKNKLA  420 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCc--eEEecccccCcceee
Confidence            444444 455556788889999999999877665 77777887643       2234445555  9999987  33 121


Q ss_pred             eeeCcC---CCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEE
Q 042434          347 AWRGTR---IPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWD  421 (517)
Q Consensus       347 ~~~~~~---~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d  421 (517)
                      ....+.   .....|++-..+| ++++|+.+|.|++||--...  ....+.+.+|..+..+.+|+++++.+ +..+.+.+
T Consensus       421 ~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~  498 (644)
T KOG2395|consen  421 VVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLID  498 (644)
T ss_pred             eeeccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEE
Confidence            112211   1245566655555 88999999999999973333  55667788999999999999987665 45566666


Q ss_pred             c
Q 042434          422 V  422 (517)
Q Consensus       422 ~  422 (517)
                      +
T Consensus       499 t  499 (644)
T KOG2395|consen  499 T  499 (644)
T ss_pred             E
Confidence            5

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.38  E-value=0.026  Score=42.19  Aligned_cols=99  Identities=14%  Similarity=0.143  Sum_probs=65.4

Q ss_pred             EEEEEECC---CC-CEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc
Q 042434          225 VWFVQFSN---NG-EYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI  300 (517)
Q Consensus       225 v~~~~~s~---~~-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~  300 (517)
                      |+++++..   +| +.|++||.|..|++|+-.     ..+..+. -.+.|+++.-... ..++.+-.+|+|-+|+-  ..
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~-----e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~   72 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD-----EIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQ   72 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC-----cEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeC--cc
Confidence            56666654   33 589999999999999853     2334443 3567888877765 57888899999999985  33


Q ss_pred             EEEEeCCCCCceEEEEEeC-C--C-CeEEEeeCCCce
Q 042434          301 CKHTFGDHGFIVSSCAWFP-D--S-KRLVCGSSDTEK  333 (517)
Q Consensus       301 ~~~~~~~~~~~v~~i~~~~-~--~-~~l~~~~~d~~v  333 (517)
                      .+...+.. ..+.++.+.. +  | ..|++|-.+|.+
T Consensus        73 RlWRiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkv  108 (111)
T PF14783_consen   73 RLWRIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKV  108 (111)
T ss_pred             eeeeeccC-CCeEEEEEEcCCCCCceEEEEEecCCeE
Confidence            34444333 3366666554 2  2 267888777763

>PRK10115 protease 2; Provisional

Probab=97.33  E-value=0.27  Score=51.16  Aligned_cols=239  Identities=12%  Similarity=0.106  Sum_probs=119.1

Q ss_pred             CCEEEEEECCCCCeEEEEeC-CC----eEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCC----ceeEEEE
Q 042434          268 NPVSFVAWSPDDTKLLTCGN-AE----VLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDT----EKGIFMC  338 (517)
Q Consensus       268 ~~v~~l~~s~~~~~l~s~~~-dg----~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~----~v~i~~~  338 (517)
                      -.+..+.|+||+++|+.+.. +|    .|++-|+.+|..+...-...  -..++|.+|++.|+.+..+.    .-.+|.+
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h  204 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRH  204 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence            34677889999998886533 23    68899998886432211111  14699999998777765532    1458888


Q ss_pred             eCCCC--eeE-eeeCcCCCceEEEEEccCCCEEEEEeC---CCcEEEEECCC--ce-EEeeccC-CCeeEEEEcCCCCEE
Q 042434          339 DCDGN--EIK-AWRGTRIPKVLDLAVTPDGENLISVLS---DKDIRILNLGT--YA-ERVISEE-HPITSLSVSVDCKNF  408 (517)
Q Consensus       339 ~~~~~--~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~--~~-~~~~~~~-~~i~~~~~s~~~~~l  408 (517)
                      +..+.  ... .+.............+.++++++..+.   ++.+.+++...  .. ....... .....+. +.. ..+
T Consensus       205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~l  282 (686)
T PRK10115        205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQ-HRF  282 (686)
T ss_pred             ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCC-CEE
Confidence            88765  222 233222112223444558887665443   34788888532  22 2222222 2222222 222 344


Q ss_pred             EEEeCC--C--eEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEE--EecCCCceeEEec-CCC
Q 042434          409 IVNLNS--Q--EIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYI--WNRRNSKPIEILS-GHS  481 (517)
Q Consensus       409 ~~~~~d--~--~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i--wd~~~~~~~~~~~-~h~  481 (517)
                      ...+..  .  .|...++... ..-..+..+.. ...+..+.+. .+.++++...+|.-++  ++..++ .+..+. ...
T Consensus       283 y~~tn~~~~~~~l~~~~~~~~-~~~~~l~~~~~-~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~~~~  358 (686)
T PRK10115        283 YLRSNRHGKNFGLYRTRVRDE-QQWEELIPPRE-NIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTR-EVIGIAFDDP  358 (686)
T ss_pred             EEEEcCCCCCceEEEecCCCc-ccCeEEECCCC-CCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCC-ceEEecCCCC
Confidence            443332  2  3444444321 11223333322 1223333333 3456666666775444  454433 334433 222


Q ss_pred             CCeeEEEec--CCCCcEEEEeeC---CCcEEEeCCCCC
Q 042434          482 MTVNCVSWN--PKRPKMLASASD---DHTIRIWGPCQS  514 (517)
Q Consensus       482 ~~v~~v~~~--~~~~~~l~s~~~---dg~v~iw~~~~~  514 (517)
                      ..+..+.++  +++..++++.+.   -+.+..+|+.++
T Consensus       359 ~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~  396 (686)
T PRK10115        359 AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG  396 (686)
T ss_pred             ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence            233334444  344345555443   356777777654

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.32  E-value=0.27  Score=50.81  Aligned_cols=305  Identities=12%  Similarity=0.118  Sum_probs=163.8

Q ss_pred             cccccCCCcccccCCCcccEEEec---c--ccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCC-eeeEEEEeccCCCC
Q 042434          196 AISLYEDHCCGRDQIPTETVQILT---E--HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDS-KLTLKHTLRSHQNP  269 (517)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~l~---~--h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~-~~~~~~~~~~h~~~  269 (517)
                      +++++++........|.-......   +  -...|.-..|-.|..+|.++..||.+.-+.++... .....+...-...+
T Consensus       552 aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P  631 (1096)
T KOG1897|consen  552 AVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQP  631 (1096)
T ss_pred             EEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCC
Confidence            556666665555555544333322   1  22345555666678899999999998877664321 11111222223566


Q ss_pred             EEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCC--CCeEEEeeCCCceeEEEEeCCC-CeeE
Q 042434          270 VSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPD--SKRLVCGSSDTEKGIFMCDCDG-NEIK  346 (517)
Q Consensus       270 v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~d~~v~i~~~~~~~-~~~~  346 (517)
                      +.--.|+..++.-+.+..|.-..+|.- +++...+--.-+.--..+.|+.+  ...++.+..+. +++...|.-. -.++
T Consensus       632 ~~Lr~f~sk~~t~vfa~sdrP~viY~~-n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~~~~-l~i~tid~iqkl~ir  709 (1096)
T KOG1897|consen  632 ISLRTFSSKSRTAVFALSDRPTVIYSS-NGKLVYSPLSLKEVNHMCPFNSDAYPDSLASANGGA-LTIGTIDEIQKLHIR  709 (1096)
T ss_pred             cEEEEEeeCCceEEEEeCCCCEEEEec-CCcEEEeccchHHhhhhcccccccCCceEEEecCCc-eEEEEecchhhccee
Confidence            666677766554444555665556653 34333221111111111222222  23444444443 3333333222 2222


Q ss_pred             eeeCcCCCceEEEEEccCCCEEEEEeC-----------C---CcEEEEECCCceEEe---eccC---CCeeEEEEcCC-C
Q 042434          347 AWRGTRIPKVLDLAVTPDGENLISVLS-----------D---KDIRILNLGTYAERV---ISEE---HPITSLSVSVD-C  405 (517)
Q Consensus       347 ~~~~~~~~~i~~~~~~~~~~~l~~~~~-----------d---g~i~i~d~~~~~~~~---~~~~---~~i~~~~~s~~-~  405 (517)
                      ....+  .....+++.+....+.+.+.           .   ..++++|-++.+...   ....   ..+.+..|..| +
T Consensus       710 tvpl~--~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~  787 (1096)
T KOG1897|consen  710 TVPLG--ESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPN  787 (1096)
T ss_pred             eecCC--CChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCc
Confidence            22222  24555666664333333322           1   247778877766221   1112   23555568777 6


Q ss_pred             CEEEEEeC----------CCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeE
Q 042434          406 KNFIVNLN----------SQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIE  475 (517)
Q Consensus       406 ~~l~~~~~----------d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  475 (517)
                      .++++|+.          .|.|.+|..... ........+.-...+...+.  -+|+++|.-  +..|++|++.+.+.++
T Consensus       788 t~~vVGT~~v~Pde~ep~~GRIivfe~~e~-~~L~~v~e~~v~Gav~aL~~--fngkllA~I--n~~vrLye~t~~~eLr  862 (1096)
T KOG1897|consen  788 TYYVVGTGLVYPDENEPVNGRIIVFEFEEL-NSLELVAETVVKGAVYALVE--FNGKLLAGI--NQSVRLYEWTTERELR  862 (1096)
T ss_pred             eEEEEEEEeeccCCCCcccceEEEEEEecC-Cceeeeeeeeeccceeehhh--hCCeEEEec--CcEEEEEEccccceeh
Confidence            77888753          478888888663 33333333332223333333  378777755  5579999999988887


Q ss_pred             EecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeC
Q 042434          476 ILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWG  510 (517)
Q Consensus       476 ~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~  510 (517)
                      .-..|..++..+...-.| ..++.|..=+.+.+-.
T Consensus       863 ~e~~~~~~~~aL~l~v~g-deI~VgDlm~Sitll~  896 (1096)
T KOG1897|consen  863 IECNISNPIIALDLQVKG-DEIAVGDLMRSITLLQ  896 (1096)
T ss_pred             hhhcccCCeEEEEEEecC-cEEEEeeccceEEEEE
Confidence            777888899999888888 6788887766665533

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.27  E-value=0.0026  Score=60.11  Aligned_cols=131  Identities=15%  Similarity=0.143  Sum_probs=84.1

Q ss_pred             EEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCE-------EEEEeCCCeEEEEEcCCCCc-cceEEeCccc-C
Q 042434          369 ISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKN-------FIVNLNSQEIHMWDVAGKWE-KPFKYTGHSQ-N  438 (517)
Q Consensus       369 ~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~-------l~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~-~  438 (517)
                      ..+.....++-.|+..++ .........|+-+.+.|+.+.       -++|-.++.|.-||.+-... .+....+|.- .
T Consensus       350 ~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~  429 (644)
T KOG2395|consen  350 MDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYST  429 (644)
T ss_pred             eCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccccc
Confidence            344455678888888887 333344444777888886543       45677888999999975433 2222222221 1


Q ss_pred             ceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEe
Q 042434          439 KYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASA  500 (517)
Q Consensus       439 ~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~  500 (517)
                      ..-..|.. .....+|++||.+|.|++||.-.-+.-..+++-..+|..|..+.+|..+|+||
T Consensus       430 k~nFsc~a-TT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc  490 (644)
T KOG2395|consen  430 KNNFSCFA-TTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC  490 (644)
T ss_pred             ccccceee-ecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec
Confidence            11122322 33455899999999999999733334445678889999999999995555544

>PHA03098 kelch-like protein; Provisional

Probab=97.27  E-value=0.23  Score=50.52  Aligned_cols=189  Identities=13%  Similarity=0.024  Sum_probs=87.9

Q ss_pred             CCCCEEEEeeCCC------cEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCC-----eEEEEECCCCc
Q 042434          232 NNGEYLASSSSDC------SAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAE-----VLKLWDVETGI  300 (517)
Q Consensus       232 ~~~~~l~t~~~dg------~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg-----~i~iwd~~~~~  300 (517)
                      .++..++.|+.++      .+..||..+. .+.....+.........+.+  ++...+.||.++     .+..||..+++
T Consensus       293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~-~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~  369 (534)
T PHA03098        293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTK-SWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESK  369 (534)
T ss_pred             ECCEEEEECCCcCCCCeeccEEEEeCCCC-eeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence            3556667776543      4666776543 22222111111112222222  567777887653     57788887765


Q ss_pred             EEEEeCCCCCceEEEEEeCCCCeEEEeeCCC----ceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCC-
Q 042434          301 CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDT----EKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDK-  375 (517)
Q Consensus       301 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~----~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-  375 (517)
                      -...-..........+..-+++.++.|+.+.    .-.++.||..+..-..............+...++...+.|+.++ 
T Consensus       370 W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~  449 (534)
T PHA03098        370 WREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYI  449 (534)
T ss_pred             eeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCC
Confidence            4322111111111111223567777777421    12377888776543332221111111122233566666665432 


Q ss_pred             -------cEEEEECCCceEEeec-c--CCCeeEEEEcCCCCEEEEEeCC-----CeEEEEEcCC
Q 042434          376 -------DIRILNLGTYAERVIS-E--EHPITSLSVSVDCKNFIVNLNS-----QEIHMWDVAG  424 (517)
Q Consensus       376 -------~i~i~d~~~~~~~~~~-~--~~~i~~~~~s~~~~~l~~~~~d-----~~i~~~d~~~  424 (517)
                             .+.+||..+.+-.... .  .....+++ ..+++.++.|+.+     +.+..||..+
T Consensus       450 ~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~v~~yd~~~  512 (534)
T PHA03098        450 DNIKVYNIVESYNPVTNKWTELSSLNFPRINASLC-IFNNKIYVVGGDKYEYYINEIEVYDDKT  512 (534)
T ss_pred             CCCcccceEEEecCCCCceeeCCCCCcccccceEE-EECCEEEEEcCCcCCcccceeEEEeCCC
Confidence                   3888998876621111 1  11111111 1255666666543     3567777654

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.18  E-value=0.15  Score=45.21  Aligned_cols=200  Identities=12%  Similarity=0.106  Sum_probs=126.4

Q ss_pred             CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce
Q 042434          307 DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA  386 (517)
Q Consensus       307 ~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  386 (517)
                      +....+.++.|+|+.+.|++......- +...+.+|..+..+..........+.+..+|.++++--.++.+.++.+....
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~-iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t  161 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAA-IVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT  161 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCce-EEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence            445569999999999988887766542 6667888888887766555567788898888888888888888888765442


Q ss_pred             --E-----E----eecc-CCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccce--EEeCcccC----ceEEEeecCC
Q 042434          387 --E-----R----VISE-EHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPF--KYTGHSQN----KYVIRSCFGG  448 (517)
Q Consensus       387 --~-----~----~~~~-~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~--~~~~~~~~----~~~i~~~~~s  448 (517)
                        .     .    ...+ +.....++|+|....+.++-.-+-+.+|.+........  ....+...    ...+....+.
T Consensus       162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~  241 (316)
T COG3204         162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN  241 (316)
T ss_pred             cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence              0     0    1111 44678899999999999988887777777653311111  11111111    1112233333


Q ss_pred             -CCCcEEEEecCCCcEEEEecCCCceeEEecCCC------C---CeeEEEecCCCCcEEEEeeCCCcEEEeC
Q 042434          449 -LDGTFIASGSENSQIYIWNRRNSKPIEILSGHS------M---TVNCVSWNPKRPKMLASASDDHTIRIWG  510 (517)
Q Consensus       449 -~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~------~---~v~~v~~~~~~~~~l~s~~~dg~v~iw~  510 (517)
                       +.+.+++-+.+++.+.-.|.. |.++..+.-+.      .   .--.|+..++|.  |...|.-+..+.+.
T Consensus       242 ~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~--lYIvSEPnlfy~F~  310 (316)
T COG3204         242 AITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN--LYIVSEPNLFYRFT  310 (316)
T ss_pred             CCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCC--EEEEecCCcceecc
Confidence             356777888888888888865 55555443221      1   234677777773  44455555444443

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.17  E-value=0.0028  Score=61.18  Aligned_cols=93  Identities=18%  Similarity=0.179  Sum_probs=70.6

Q ss_pred             CCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceE-EEEEeCCCCeEEEeeCCCceeEEEEeCCCC-e
Q 042434          267 QNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVS-SCAWFPDSKRLVCGSSDTEKGIFMCDCDGN-E  344 (517)
Q Consensus       267 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~-~  344 (517)
                      ...|..+.|+|.-..+|.+..+|.|.+..+. .+.+.++.-++..++ +++|.|||+.+++|-.||+  |.+.|.... .
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~--I~L~Dve~~~~   96 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGT--IRLHDVEKGGR   96 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCe--EEEEEccCCCc
Confidence            4568889999999999999999999999987 777888876777777 9999999999999999999  666666532 2


Q ss_pred             eEeeeCcCCCceEEEEEc
Q 042434          345 IKAWRGTRIPKVLDLAVT  362 (517)
Q Consensus       345 ~~~~~~~~~~~i~~~~~~  362 (517)
                      +..........|.++-|.
T Consensus        97 l~~~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   97 LVSFLFSVETDISKGIWD  114 (665)
T ss_pred             eeccccccccchheeecc
Confidence            222222222345555554

>PRK13684 Ycf48-like protein; Provisional

Probab=97.09  E-value=0.27  Score=46.33  Aligned_cols=273  Identities=12%  Similarity=0.098  Sum_probs=137.4

Q ss_pred             cCcEEEEEECCCCCEEEEeeCCCcEEEEEecC-CCeeeEEEE-eccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCC-
Q 042434          222 KNEVWFVQFSNNGEYLASSSSDCSAIIWKVLE-DSKLTLKHT-LRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVET-  298 (517)
Q Consensus       222 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~-~~~~~~~~~-~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~-  298 (517)
                      ...++++.|..+.+-+|+|. +|.  ||...+ +..++.... +......+.++.|.++ ..+++ +..|.|.  ...+ 
T Consensus        45 ~~~l~~v~F~d~~~g~avG~-~G~--il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~i~--~S~Dg  117 (334)
T PRK13684         45 EANLLDIAFTDPNHGWLVGS-NRT--LLETNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSLLL--HTTDG  117 (334)
T ss_pred             CCceEEEEEeCCCcEEEEEC-CCE--EEEEcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCceEE--EECCC
Confidence            56888999986666666664 454  444432 334433211 1112334778888654 33443 4455432  2222 


Q ss_pred             CcEEEEeC---CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCC
Q 042434          299 GICKHTFG---DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDK  375 (517)
Q Consensus       299 ~~~~~~~~---~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  375 (517)
                      |+.-..+.   ........+....++.. ..++..|.  ++.-+-.++.-........+.+.++.+.|++.+++++ ..|
T Consensus       118 G~tW~~~~~~~~~~~~~~~i~~~~~~~~-~~~g~~G~--i~~S~DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g-~~G  193 (334)
T PRK13684        118 GKNWTRIPLSEKLPGSPYLITALGPGTA-EMATNVGA--IYRTTDGGKNWEALVEDAAGVVRNLRRSPDGKYVAVS-SRG  193 (334)
T ss_pred             CCCCeEccCCcCCCCCceEEEEECCCcc-eeeeccce--EEEECCCCCCceeCcCCCcceEEEEEECCCCeEEEEe-CCc
Confidence            32222221   11111222222222323 33444554  5555545544444444444578899999988666554 455


Q ss_pred             cEEE-EECCC--ceEEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC--CccceEEeCcccCceEEEeecCCCC
Q 042434          376 DIRI-LNLGT--YAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK--WEKPFKYTGHSQNKYVIRSCFGGLD  450 (517)
Q Consensus       376 ~i~i-~d~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~--~~~~~~~~~~~~~~~~i~~~~~s~~  450 (517)
                      .+.. +|-..  ...........++.+.+.++++.++++ ..|.+.+=....+  +..+..  ........+..+.+.++
T Consensus       194 ~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~--~~~~~~~~l~~v~~~~~  270 (334)
T PRK13684        194 NFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPII--PEITNGYGYLDLAYRTP  270 (334)
T ss_pred             eEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccC--CccccccceeeEEEcCC
Confidence            4443 23222  223333455678999999998877665 4565543222222  121110  00101122344444677


Q ss_pred             CcEEEEecCCCcEEEEecCCCceeEEec---CCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCC
Q 042434          451 GTFIASGSENSQIYIWNRRNSKPIEILS---GHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPC  512 (517)
Q Consensus       451 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~  512 (517)
                      +..+++ +.+|.+. .....|+.-....   .-....+.+.|..++ . .+..+..|.|.-|+-.
T Consensus       271 ~~~~~~-G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~-~-~~~~G~~G~il~~~~~  331 (334)
T PRK13684        271 GEIWAG-GGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPE-K-GFVLGQRGVLLRYVGS  331 (334)
T ss_pred             CCEEEE-cCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCC-c-eEEECCCceEEEecCC
Confidence            765554 4567554 3444454433332   222457788887666 3 4557788888888754

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.08  E-value=0.4  Score=48.26  Aligned_cols=237  Identities=12%  Similarity=0.106  Sum_probs=125.8

Q ss_pred             CEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECC---CCCeEEEEe------CCCeEEEEECCCCcEEEEe
Q 042434          235 EYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP---DDTKLLTCG------NAEVLKLWDVETGICKHTF  305 (517)
Q Consensus       235 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~---~~~~l~s~~------~dg~i~iwd~~~~~~~~~~  305 (517)
                      ..++.++.|+.+.-.|..+++..-. .....+... ..+.-+|   ++ .++++.      .+|.|..+|.++|+.+-.+
T Consensus       121 ~~v~v~t~dg~l~ALDa~TGk~~W~-~~~~~~~~~-~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~  197 (527)
T TIGR03075       121 GKVFFGTLDARLVALDAKTGKVVWS-KKNGDYKAG-YTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRR  197 (527)
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEee-ccccccccc-ccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEec
Confidence            4567777889999889877754211 111111110 0111122   34 455543      2689999999999887765


Q ss_pred             CCCC-------------------------------CceE-EEEEeCCCCeEEEeeCC-----C---------ceeEEEEe
Q 042434          306 GDHG-------------------------------FIVS-SCAWFPDSKRLVCGSSD-----T---------EKGIFMCD  339 (517)
Q Consensus       306 ~~~~-------------------------------~~v~-~i~~~~~~~~l~~~~~d-----~---------~v~i~~~~  339 (517)
                      ..-.                               ..++ .+++.|...+++.+..+     +         +-.+.-.|
T Consensus       198 ~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld  277 (527)
T TIGR03075       198 YTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARD  277 (527)
T ss_pred             cCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEc
Confidence            3211                               1111 23555555666665522     2         11255566


Q ss_pred             CCCCeeE-eeeC-cC-------CCceEEEEEccCCC---EEEEEeCCCcEEEEECCCceEE---------ee----c-c-
Q 042434          340 CDGNEIK-AWRG-TR-------IPKVLDLAVTPDGE---NLISVLSDKDIRILNLGTYAER---------VI----S-E-  392 (517)
Q Consensus       340 ~~~~~~~-~~~~-~~-------~~~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~---------~~----~-~-  392 (517)
                      .++.+++ .++. +|       .....-+.+..+|+   .++.+..+|.+++.|-.+++..         ..    . . 
T Consensus       278 ~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~  357 (527)
T TIGR03075       278 PDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKT  357 (527)
T ss_pred             cccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCC
Confidence            6644443 2221 11       01112223334665   7778999999999999887632         00    0 0 


Q ss_pred             CCC----------------------------eeEEEEcCCCCEEEEEeCC------------------------------
Q 042434          393 EHP----------------------------ITSLSVSVDCKNFIVNLNS------------------------------  414 (517)
Q Consensus       393 ~~~----------------------------i~~~~~s~~~~~l~~~~~d------------------------------  414 (517)
                      ..+                            -..++++|+...+++...+                              
T Consensus       358 g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~  437 (527)
T TIGR03075       358 GRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPD  437 (527)
T ss_pred             CCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCC
Confidence            000                            0125666666665554443                              


Q ss_pred             ---CeEEEEEcCCCCccceEEeCcccC-ceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCC
Q 042434          415 ---QEIHMWDVAGKWEKPFKYTGHSQN-KYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGH  480 (517)
Q Consensus       415 ---~~i~~~d~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h  480 (517)
                         |.+.-+|+.++ +........... ...+     .-.+.+++.++.+|.++.+|.++|+.+....-.
T Consensus       438 ~~~g~l~AiD~~tG-k~~W~~~~~~p~~~~~l-----~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g  501 (527)
T TIGR03075       438 DHMGSLIAWDPITG-KIVWEHKEDFPLWGGVL-----ATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG  501 (527)
T ss_pred             CCceeEEEEeCCCC-ceeeEecCCCCCCCcce-----EECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence               23555565554 222222211110 0001     114557778888999999999999999888653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.04  E-value=0.2  Score=44.23  Aligned_cols=196  Identities=8%  Similarity=0.028  Sum_probs=115.6

Q ss_pred             EEEEeCCC-CCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeE-eeeCcCCCceEEEEEccCCCEEEEEeCCCcEE
Q 042434          301 CKHTFGDH-GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIK-AWRGTRIPKVLDLAVTPDGENLISVLSDKDIR  378 (517)
Q Consensus       301 ~~~~~~~~-~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  378 (517)
                      .+.++... ..-...+.|..++.++-+.+.-|.-.+..+|..+..+. .......-.-..++... ++.....-.++...
T Consensus        35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f  113 (264)
T PF05096_consen   35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGF  113 (264)
T ss_dssp             EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEE
T ss_pred             EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeEE
Confidence            34555322 33445688878888999999999888999999865543 33333222334444443 33444556788999


Q ss_pred             EEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccC--ceEEEeecCCCCCcEEE
Q 042434          379 ILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQN--KYVIRSCFGGLDGTFIA  455 (517)
Q Consensus       379 i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~  455 (517)
                      +||..+.+ .........-..++  .+++.++.+.....++++|..+. .....+.....+  ...+.-+-+ -+|...|
T Consensus       114 ~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f-~~~~~i~V~~~g~pv~~LNELE~-i~G~IyA  189 (264)
T PF05096_consen  114 VYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETF-KEVRTIQVTDNGRPVSNLNELEY-INGKIYA  189 (264)
T ss_dssp             EEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT--SEEEEEE-EETTEE---EEEEEE-ETTEEEE
T ss_pred             EEccccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCccc-ceEEEEEEEECCEECCCcEeEEE-EcCEEEE
Confidence            99999877 33333334444555  57788888888899999998764 334443332221  111111111 2566666


Q ss_pred             EecCCCcEEEEecCCCceeEEecC------------C---CCCeeEEEecCCCCcEEEEee
Q 042434          456 SGSENSQIYIWNRRNSKPIEILSG------------H---SMTVNCVSWNPKRPKMLASAS  501 (517)
Q Consensus       456 ~~~~dg~i~iwd~~~~~~~~~~~~------------h---~~~v~~v~~~~~~~~~l~s~~  501 (517)
                      =.-....|...|..+|+.+..+..            +   .+..+.|||.|....+++||-
T Consensus       190 NVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  190 NVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             EETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             EeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence            565666788889999988776521            1   356899999998867777763

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.02  E-value=0.38  Score=46.98  Aligned_cols=123  Identities=14%  Similarity=0.183  Sum_probs=77.3

Q ss_pred             cccCcEEEEEECCC----CCEEEEeeCCCcEEEEEecCC--CeeeEEEEecc-C--CC--CEEEEEECCCCCeEEEEeCC
Q 042434          220 EHKNEVWFVQFSNN----GEYLASSSSDCSAIIWKVLED--SKLTLKHTLRS-H--QN--PVSFVAWSPDDTKLLTCGNA  288 (517)
Q Consensus       220 ~h~~~v~~~~~s~~----~~~l~t~~~dg~i~iw~~~~~--~~~~~~~~~~~-h--~~--~v~~l~~s~~~~~l~s~~~d  288 (517)
                      |.-..|..+.|.|-    ...|.+......|.||.+...  +..+....-.. .  .-  --..+.|+|....|++-...
T Consensus        54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~  133 (671)
T PF15390_consen   54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTAR  133 (671)
T ss_pred             eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecC
Confidence            44567889999994    224444456689999988521  11111111111 1  11  12457899999888877666


Q ss_pred             CeEEEEECCCC--cEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCe
Q 042434          289 EVLKLWDVETG--ICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNE  344 (517)
Q Consensus       289 g~i~iwd~~~~--~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~  344 (517)
                      ..-.++++...  +....+ ...+.|.|.+|.+||+.|+++-.. .+.-|+||...+.
T Consensus       134 dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGS-sLHSyiWd~~qKt  189 (671)
T PF15390_consen  134 DVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGS-SLHSYIWDSAQKT  189 (671)
T ss_pred             ceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCC-eEEEEEecCchhh
Confidence            55556666433  233334 557789999999999998887554 5678999976543

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.99  E-value=0.57  Score=48.58  Aligned_cols=95  Identities=14%  Similarity=0.139  Sum_probs=59.0

Q ss_pred             CCCEEEEEECCCCCeEEEEeCCCeEEEEECCC-CcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCee
Q 042434          267 QNPVSFVAWSPDDTKLLTCGNAEVLKLWDVET-GICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEI  345 (517)
Q Consensus       267 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~  345 (517)
                      .-.|..+.++|+|.+++..|..|. .|-.+.. .-....+.+....|.|-.+.-+..++ ..+                 
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~-~~~-----------------  144 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFF-TSN-----------------  144 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhc-cCC-----------------
Confidence            346889999999999999888664 4444421 11112233334445444443333222 111                 


Q ss_pred             EeeeCcCCCceEEEEEccC---CCEEEEEeCCCcEEEEECCCce
Q 042434          346 KAWRGTRIPKVLDLAVTPD---GENLISVLSDKDIRILNLGTYA  386 (517)
Q Consensus       346 ~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~  386 (517)
                            ....|..+.|+|.   +..|++-+.|+++++||+....
T Consensus       145 ------~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  145 ------SSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             ------CCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence                  1126788899886   4789999999999999996543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.96  E-value=0.34  Score=45.53  Aligned_cols=238  Identities=17%  Similarity=0.109  Sum_probs=114.7

Q ss_pred             cEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEe----ccCCCCEEEEEECCC---CCeEE-EEeCC-------
Q 042434          224 EVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTL----RSHQNPVSFVAWSPD---DTKLL-TCGNA-------  288 (517)
Q Consensus       224 ~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~----~~h~~~v~~l~~s~~---~~~l~-s~~~d-------  288 (517)
                      ..+.++|.|||+++++ ...|.|++++ ..+.....+..+    .........++++|+   +.+|. +.+..       
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            4678999999987776 5699999998 333221223332    234567899999994   33443 33321       


Q ss_pred             -CeEEEEECCCC-------cEE-EEeCC---CCCceEEEEEeCCCCeEEEeeCCCc-----------eeEEEEeCCCCe-
Q 042434          289 -EVLKLWDVETG-------ICK-HTFGD---HGFIVSSCAWFPDSKRLVCGSSDTE-----------KGIFMCDCDGNE-  344 (517)
Q Consensus       289 -g~i~iwd~~~~-------~~~-~~~~~---~~~~v~~i~~~~~~~~l~~~~~d~~-----------v~i~~~~~~~~~-  344 (517)
                       ..|.-|....+       +.+ .....   ....-..+.|.|||.+.++.+..+.           -+|...+..+.. 
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p  160 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIP  160 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCC
Confidence             24444544333       111 11112   2344567999999977666544332           136666665531 


Q ss_pred             ------------eEeeeCcCCCceEEEEEccC-CCEEEEE-eCCCcEEEEECCCce------------------------
Q 042434          345 ------------IKAWRGTRIPKVLDLAVTPD-GENLISV-LSDKDIRILNLGTYA------------------------  386 (517)
Q Consensus       345 ------------~~~~~~~~~~~i~~~~~~~~-~~~l~~~-~~dg~i~i~d~~~~~------------------------  386 (517)
                                  ...+.... .....++|+|. |.++++= +.++.=.|.-+..+.                        
T Consensus       161 ~dnP~~~~~~~~~~i~A~Gl-RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~  239 (331)
T PF07995_consen  161 ADNPFVGDDGADSEIYAYGL-RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSC  239 (331)
T ss_dssp             TTSTTTTSTTSTTTEEEE---SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-
T ss_pred             CCCccccCCCceEEEEEeCC-CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCC
Confidence                        11111111 24567999998 5544332 222222222111111                        


Q ss_pred             ------EEeeccCCCeeEEEEcC-------CCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcE
Q 042434          387 ------ERVISEEHPITSLSVSV-------DCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTF  453 (517)
Q Consensus       387 ------~~~~~~~~~i~~~~~s~-------~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  453 (517)
                            .....+...+..+.|-.       .+.++++....+.|....+...........-.......+..+...|||.+
T Consensus       240 ~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~L  319 (331)
T PF07995_consen  240 PGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGAL  319 (331)
T ss_dssp             TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEE
T ss_pred             CCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeE
Confidence                  01112223455555543       34556666666778877775442211111111111113444555777777


Q ss_pred             EEEecCCCcEE
Q 042434          454 IASGSENSQIY  464 (517)
Q Consensus       454 l~~~~~dg~i~  464 (517)
                      .++...+|.|+
T Consensus       320 yv~~d~~G~iy  330 (331)
T PF07995_consen  320 YVSDDSDGKIY  330 (331)
T ss_dssp             EEEE-TTTTEE
T ss_pred             EEEECCCCeEe
Confidence            77776777664

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.95  E-value=0.4  Score=46.05  Aligned_cols=269  Identities=10%  Similarity=0.065  Sum_probs=137.2

Q ss_pred             CCCEEEEeeCCCcEEEEEecCCCe-eeEEEEeccCCCCEEEEEECC-----CCCeEEEEeCCCeEEEEECCC--Cc----
Q 042434          233 NGEYLASSSSDCSAIIWKVLEDSK-LTLKHTLRSHQNPVSFVAWSP-----DDTKLLTCGNAEVLKLWDVET--GI----  300 (517)
Q Consensus       233 ~~~~l~t~~~dg~i~iw~~~~~~~-~~~~~~~~~h~~~v~~l~~s~-----~~~~l~s~~~dg~i~iwd~~~--~~----  300 (517)
                      +...+++||..|.++||+...+.. ......-..-..+|..+..-+     +...||+ =.-..+.||.+..  |.    
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g  114 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG  114 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence            346899999999999999854321 111111112357788777532     2234444 4456788887621  11    


Q ss_pred             ---EEEEeCCC--CCceEEEEEeC----C-CCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEE
Q 042434          301 ---CKHTFGDH--GFIVSSCAWFP----D-SKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLIS  370 (517)
Q Consensus       301 ---~~~~~~~~--~~~v~~i~~~~----~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  370 (517)
                         .+...-.|  ......+++-|    . ..++.+-+.||.  +.+++-+......+.... --...+++.+....+++
T Consensus       115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~--L~~feqe~~~f~~~lp~~-llPgPl~Y~~~tDsfvt  191 (418)
T PF14727_consen  115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGS--LSFFEQESFAFSRFLPDF-LLPGPLCYCPRTDSFVT  191 (418)
T ss_pred             cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCce--EEEEeCCcEEEEEEcCCC-CCCcCeEEeecCCEEEE
Confidence               11111122  22233344333    2 357888899999  777776655443333221 13345788888889999


Q ss_pred             EeCCCcEEEEECCCce------------------------EEeeccCCCeeEEEE---cCCCCEEEEEeCCCeEEEEEcC
Q 042434          371 VLSDKDIRILNLGTYA------------------------ERVISEEHPITSLSV---SVDCKNFIVNLNSQEIHMWDVA  423 (517)
Q Consensus       371 ~~~dg~i~i~d~~~~~------------------------~~~~~~~~~i~~~~~---s~~~~~l~~~~~d~~i~~~d~~  423 (517)
                      ++.+..+..|......                        .+...-+..+..+..   +.....+++-+ ...+.+.+..
T Consensus       192 ~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~~  270 (418)
T PF14727_consen  192 ASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG-ERSLFCLKDN  270 (418)
T ss_pred             ecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEe-cceEEEEcCC
Confidence            9999888888752211                        112222333333332   22222222222 3344444443


Q ss_pred             CCCccceEEeCcccCceEEEee-cCCCC-CcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEec--CCCCcEEEE
Q 042434          424 GKWEKPFKYTGHSQNKYVIRSC-FGGLD-GTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWN--PKRPKMLAS  499 (517)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~i~~~-~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~--~~~~~~l~s  499 (517)
                      +.-...+++......-...... ...++ +..++.++.++++.||.=  .+++...+....+| ++...  ++-+.++++
T Consensus       271 G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d--~~L~WsA~l~~~PV-al~v~~~~~~~G~IV~  347 (418)
T PF14727_consen  271 GSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED--TTLVWSAQLPHVPV-ALSVANFNGLKGLIVS  347 (418)
T ss_pred             CeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeC--CeEEEecCCCCCCE-EEEecccCCCCceEEE
Confidence            3222222222222111111110 11122 225888899999999963  34444433333333 33322  222358999


Q ss_pred             eeCCCcEEEe
Q 042434          500 ASDDHTIRIW  509 (517)
Q Consensus       500 ~~~dg~v~iw  509 (517)
                      -+.+|.+.+-
T Consensus       348 Ls~~G~L~v~  357 (418)
T PF14727_consen  348 LSDEGQLSVS  357 (418)
T ss_pred             EcCCCcEEEE
Confidence            9999988764

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.94  E-value=0.31  Score=44.66  Aligned_cols=182  Identities=10%  Similarity=0.070  Sum_probs=87.6

Q ss_pred             cEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCC-CcE-
Q 042434          224 EVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVET-GIC-  301 (517)
Q Consensus       224 ~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~-~~~-  301 (517)
                      ...++.|..+ ..+++| ..| +.+...+.+..+..+..-..-.+....+....++..+++ +..|.|  |...+ |+. 
T Consensus        63 ~l~~I~f~~~-~g~ivG-~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~-~~~G~i--y~T~DgG~tW  136 (302)
T PF14870_consen   63 HLNSISFDGN-EGWIVG-EPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELA-GDRGAI--YRTTDGGKTW  136 (302)
T ss_dssp             EEEEEEEETT-EEEEEE-ETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEE-ETT--E--EEESSTTSSE
T ss_pred             eEEEEEecCC-ceEEEc-CCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEE-cCCCcE--EEeCCCCCCe
Confidence            3566777653 344444 444 444455556666544322222333444444444433333 444543  33322 322 


Q ss_pred             EEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEE
Q 042434          302 KHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILN  381 (517)
Q Consensus       302 ~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  381 (517)
                      ..........+..+.-++||++++++.....  +..|+.....-..........+..|.|.|++...+++ ..|.|+.=+
T Consensus       137 ~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~--~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~  213 (302)
T PF14870_consen  137 QAVVSETSGSINDITRSSDGRYVAVSSRGNF--YSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSD  213 (302)
T ss_dssp             EEEE-S----EEEEEE-TTS-EEEEETTSSE--EEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE
T ss_pred             eEcccCCcceeEeEEECCCCcEEEEECcccE--EEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEcc
Confidence            2333455677888889999998888765553  4466665444444444445689999999998766644 888888887


Q ss_pred             CC-Cce---EEee---ccCCCeeEEEEcCCCCEEEEEeCC
Q 042434          382 LG-TYA---ERVI---SEEHPITSLSVSVDCKNFIVNLNS  414 (517)
Q Consensus       382 ~~-~~~---~~~~---~~~~~i~~~~~s~~~~~l~~~~~d  414 (517)
                      .. ...   ....   .....+..+++.+++...++++..
T Consensus       214 ~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G  253 (302)
T PF14870_consen  214 DPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG  253 (302)
T ss_dssp             -TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred             CCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCc
Confidence            22 222   1111   223347889999987777766544

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.94  E-value=0.0058  Score=55.85  Aligned_cols=103  Identities=18%  Similarity=0.298  Sum_probs=83.5

Q ss_pred             HHHHHHHHHhhcChHHHHHHHhhhcCeeec-C------hhHHHHHHHHHcCChHHHHHHhhcccCCChhhhcccchhhhh
Q 042434           19 FVRVVVQCLYSLGYQKSASCLESESGVSYK-S------KGFERLEVQILNGDWDGCIDTLIAITDLNDERRASVLFPVFK   91 (517)
Q Consensus        19 ~~~li~q~L~~~g~~~s~~~l~~Esg~~~~-~------~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~~~   91 (517)
                      +..+|..|+...|..+.+..|-+|+|...+ .      ....++.+++..++-..|++-+..-...-......+-|.+..
T Consensus       119 ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~~s~LE~~Lh~  198 (394)
T KOG2817|consen  119 LNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEKSSSLEFKLHS  198 (394)
T ss_pred             HHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccccccHHHHHHH
Confidence            588999999999999999999999999764 2      246677889999999999888876432111223467889999


Q ss_pred             hhhhHhhhcCChh--HHHHHHHhhcccCCCCh
Q 042434           92 QCFLEYLNRGDDS--LALNVLRKRVSSLQMSK  121 (517)
Q Consensus        92 ~~~~el~~~~~~~--~a~~~lr~~~~~~~~~~  121 (517)
                      +.|++++..|...  +|++..|+.+.|+....
T Consensus       199 l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~  230 (394)
T KOG2817|consen  199 LHFLSLIRGGKSDQREALRYARTHFAPFVADH  230 (394)
T ss_pred             HHHHHHHhcCCcCcHHHHHHHHHhcCccccch
Confidence            9999999998877  99999999999986643

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.88  E-value=0.0052  Score=63.15  Aligned_cols=102  Identities=11%  Similarity=0.122  Sum_probs=73.7

Q ss_pred             cCCCEEEEEeCCCcEEEEECCCce---EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCc
Q 042434          363 PDGENLISVLSDKDIRILNLGTYA---ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNK  439 (517)
Q Consensus       363 ~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~  439 (517)
                      -.+..++.|++.|.+...|....-   ........+|++++|+.+|+.++.|-.+|.|.+||+..+ ...+.+..+..+.
T Consensus        97 ~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~-k~l~~i~e~~ap~  175 (1206)
T KOG2079|consen   97 IVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA-KILKVITEHGAPV  175 (1206)
T ss_pred             eeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC-cceeeeeecCCcc
Confidence            345578889999999998887643   233345678999999999999999999999999999876 5555555555443


Q ss_pred             eEEEeecCCCCCcEEEEecCCCcEEEEe
Q 042434          440 YVIRSCFGGLDGTFIASGSENSQIYIWN  467 (517)
Q Consensus       440 ~~i~~~~~s~~~~~l~~~~~dg~i~iwd  467 (517)
                      ..+-..-+..++..++++...|.  +|.
T Consensus       176 t~vi~v~~t~~nS~llt~D~~Gs--f~~  201 (1206)
T KOG2079|consen  176 TGVIFVGRTSQNSKLLTSDTGGS--FWK  201 (1206)
T ss_pred             ceEEEEEEeCCCcEEEEccCCCc--eEE
Confidence            33333333456667888887786  554

>PRK10115 protease 2; Provisional

Probab=96.85  E-value=0.78  Score=47.87  Aligned_cols=238  Identities=7%  Similarity=-0.002  Sum_probs=115.7

Q ss_pred             CcEEEEEECCCCCEEEEeeC-----CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCC------CeE
Q 042434          223 NEVWFVQFSNNGEYLASSSS-----DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNA------EVL  291 (517)
Q Consensus       223 ~~v~~~~~s~~~~~l~t~~~-----dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d------g~i  291 (517)
                      -.+..+.+||||++|+.+..     ...+++-|+.++..+  ...+.   ..-..++|++|++.|+.+..+      ..|
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l--~~~i~---~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v  201 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWY--PELLD---NVEPSFVWANDSWTFYYVRKHPVTLLPYQV  201 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCC--Ccccc---CcceEEEEeeCCCEEEEEEecCCCCCCCEE
Confidence            35667889999999987633     234778888655311  11111   111569999999877665432      368


Q ss_pred             EEEECCCC--cEEEEeCCCCCceE-EEEEeCCCCeEEEeeCCCc-eeEEEEeCC--CCeeEeeeCcCCCceEEEEEccCC
Q 042434          292 KLWDVETG--ICKHTFGDHGFIVS-SCAWFPDSKRLVCGSSDTE-KGIFMCDCD--GNEIKAWRGTRIPKVLDLAVTPDG  365 (517)
Q Consensus       292 ~iwd~~~~--~~~~~~~~~~~~v~-~i~~~~~~~~l~~~~~d~~-v~i~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~  365 (517)
                      ..+++.++  +-...+........ .+..+.++++++..+..+. -.++.++..  ............+....+. +.. 
T Consensus       202 ~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-  279 (686)
T PRK10115        202 WRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQ-  279 (686)
T ss_pred             EEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCC-
Confidence            88899887  33444443333333 3333447877665544332 237777742  2221222222212222222 222 


Q ss_pred             CEEEEEeCC----CcEEEEECCC-ce-EEeecc--CCCeeEEEEcCCCCEEEEEeCCCeEEE--EEcCCCCccceEEeCc
Q 042434          366 ENLISVLSD----KDIRILNLGT-YA-ERVISE--EHPITSLSVSVDCKNFIVNLNSQEIHM--WDVAGKWEKPFKYTGH  435 (517)
Q Consensus       366 ~~l~~~~~d----g~i~i~d~~~-~~-~~~~~~--~~~i~~~~~s~~~~~l~~~~~d~~i~~--~d~~~~~~~~~~~~~~  435 (517)
                      ..+...+..    ..|...++.. .. .....+  ...+..+.++ .+..+++...++.-++  ++..+.  ....+.- 
T Consensus       280 ~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~--~~~~l~~-  355 (686)
T PRK10115        280 HRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTR--EVIGIAF-  355 (686)
T ss_pred             CEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCC--ceEEecC-
Confidence            333333322    2344445542 22 333444  2357777776 2234444455665444  444322  2222221 


Q ss_pred             ccCceEEEeecCC--CCCc-EEEEecC---CCcEEEEecCCCc
Q 042434          436 SQNKYVIRSCFGG--LDGT-FIASGSE---NSQIYIWNRRNSK  472 (517)
Q Consensus       436 ~~~~~~i~~~~~s--~~~~-~l~~~~~---dg~i~iwd~~~~~  472 (517)
                      ..... ......+  +++. ++++.+.   -+.++.+|..+++
T Consensus       356 ~~~~~-~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~  397 (686)
T PRK10115        356 DDPAY-VTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE  397 (686)
T ss_pred             CCCce-EeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence            11111 1111112  3333 4443332   3678889988765

>PHA02790 Kelch-like protein; Provisional

Probab=96.81  E-value=0.14  Score=51.07  Aligned_cols=186  Identities=10%  Similarity=-0.026  Sum_probs=89.2

Q ss_pred             CCCeEEEEeCCC-----eEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcC
Q 042434          278 DDTKLLTCGNAE-----VLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTR  352 (517)
Q Consensus       278 ~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~  352 (517)
                      ++..+++||.++     ++..||..+++....-.-...........-++...+.|+.++.-.+..|+...+.-.......
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~  350 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLL  350 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCC
Confidence            345556666543     567788877654432211111111111223677888888755444788887655433332222


Q ss_pred             CCceEEEEEccCCCEEEEEeCCC---cEEEEECCCceEEe-eccCCCe-eEEEEcCCCCEEEEEeCCCeEEEEEcCCC-C
Q 042434          353 IPKVLDLAVTPDGENLISVLSDK---DIRILNLGTYAERV-ISEEHPI-TSLSVSVDCKNFIVNLNSQEIHMWDVAGK-W  426 (517)
Q Consensus       353 ~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~-~~~~~~i-~~~~~s~~~~~l~~~~~d~~i~~~d~~~~-~  426 (517)
                      ..........-+|+..+.|+.++   .+..||..+..-.. .....+. ...+..-+++..+.|   |.+..||..+. |
T Consensus       351 ~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~~~W  427 (480)
T PHA02790        351 KPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG---RNAEFYCESSNTW  427 (480)
T ss_pred             CCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC---CceEEecCCCCcE
Confidence            11222222334677777777553   47789987766221 1111111 111223355555555   34677887543 2


Q ss_pred             ccceEEeCcccCceEEEeecCCCCCcEEEEecCC-----CcEEEEecCCC
Q 042434          427 EKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSEN-----SQIYIWNRRNS  471 (517)
Q Consensus       427 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~  471 (517)
                      ...........   ....+  -.+|+..+.||.+     ..+..||..++
T Consensus       428 ~~~~~m~~~r~---~~~~~--v~~~~IYviGG~~~~~~~~~ve~Yd~~~~  472 (480)
T PHA02790        428 TLIDDPIYPRD---NPELI--IVDNKLLLIGGFYRGSYIDTIEVYNNRTY  472 (480)
T ss_pred             eEcCCCCCCcc---ccEEE--EECCEEEEECCcCCCcccceEEEEECCCC
Confidence            22221111111   11111  2367777777754     23555555544

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.78  E-value=0.0049  Score=38.29  Aligned_cols=34  Identities=21%  Similarity=0.529  Sum_probs=29.8

Q ss_pred             CCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434          481 SMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSE  516 (517)
Q Consensus       481 ~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~  516 (517)
                      ...|..++|+|.. .++|.++.||.|.++.+ ++++
T Consensus        11 ~~~v~~~~w~P~m-dLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTM-DLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCC-CEEEEEECCCeEEEEEC-CCcC
Confidence            4579999999999 79999999999999999 5544

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.74  E-value=0.0066  Score=37.72  Aligned_cols=34  Identities=12%  Similarity=0.185  Sum_probs=30.2

Q ss_pred             CCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcE
Q 042434          267 QNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGIC  301 (517)
Q Consensus       267 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~  301 (517)
                      ...|.+++|+|...+||.++.+|.|.++.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            467999999999999999999999999998 5544

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.73  E-value=0.37  Score=42.51  Aligned_cols=202  Identities=15%  Similarity=0.128  Sum_probs=102.6

Q ss_pred             EEEEEeCCC-CeEEEeeCCCceeEEEEeCCCCee-EeeeCcCC-CceEEEEEccCCCEEEEEeCC-----CcEEEEECCC
Q 042434          313 SSCAWFPDS-KRLVCGSSDTEKGIFMCDCDGNEI-KAWRGTRI-PKVLDLAVTPDGENLISVLSD-----KDIRILNLGT  384 (517)
Q Consensus       313 ~~i~~~~~~-~~l~~~~~d~~v~i~~~~~~~~~~-~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~  384 (517)
                      ..++++|.. .-++.+-.-|+- .+++|..+... ........ ...-.=.|||||.+|+..-.|     |.|-|||.+.
T Consensus        71 Hgi~~~p~~~ravafARrPGtf-~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~  149 (366)
T COG3490          71 HGIAFHPALPRAVAFARRPGTF-AMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE  149 (366)
T ss_pred             CCeecCCCCcceEEEEecCCce-EEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence            345566643 334445455542 44556554322 11111110 122234789999988876543     6799999885


Q ss_pred             ce---EEeeccCCCeeEEEEcCCCCEEEEEeCC------------------CeEEEEEcCCCCccceEEe-CcccCceEE
Q 042434          385 YA---ERVISEEHPITSLSVSVDCKNFIVNLNS------------------QEIHMWDVAGKWEKPFKYT-GHSQNKYVI  442 (517)
Q Consensus       385 ~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~d------------------~~i~~~d~~~~~~~~~~~~-~~~~~~~~i  442 (517)
                      .-   -....+.-....+.+.+||+.++++...                  -.+.+.|..++ ..+.+.. ........+
T Consensus       150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG-~liekh~Lp~~l~~lSi  228 (366)
T COG3490         150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATG-NLIEKHTLPASLRQLSI  228 (366)
T ss_pred             ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEecccc-chhhhccCchhhhhcce
Confidence            43   2334455567789999999998876431                  12334443222 1111111 111112234


Q ss_pred             EeecCCCCCcEEEEecCCCc-----EEEEecCCCceeEEecC-------CCCCeeEEEecCCCCcEEEEeeCCCcEEEeC
Q 042434          443 RSCFGGLDGTFIASGSENSQ-----IYIWNRRNSKPIEILSG-------HSMTVNCVSWNPKRPKMLASASDDHTIRIWG  510 (517)
Q Consensus       443 ~~~~~s~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~-------h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~  510 (517)
                      +.+...+||..++.+-..|.     -.+=....++++.-+..       ....|-+|+.+.+.....+|.-..+...+||
T Consensus       229 RHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~d  308 (366)
T COG3490         229 RHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWD  308 (366)
T ss_pred             eeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEE
Confidence            44554555554443322221     11111223444443332       2345778888765534555555666778899


Q ss_pred             CCCCCC
Q 042434          511 PCQSSE  516 (517)
Q Consensus       511 ~~~~~~  516 (517)
                      ..+|.-
T Consensus       309 a~tG~v  314 (366)
T COG3490         309 AATGAV  314 (366)
T ss_pred             cCCCcE
Confidence            988763

>PHA03098 kelch-like protein; Provisional

Probab=96.61  E-value=0.16  Score=51.52  Aligned_cols=188  Identities=10%  Similarity=0.065  Sum_probs=92.1

Q ss_pred             CCCeEEEEeCCC------eEEEEECCCCcEEEEeCC--CCCceEEEEEeCCCCeEEEeeCCCc---eeEEEEeCCCCeeE
Q 042434          278 DDTKLLTCGNAE------VLKLWDVETGICKHTFGD--HGFIVSSCAWFPDSKRLVCGSSDTE---KGIFMCDCDGNEIK  346 (517)
Q Consensus       278 ~~~~l~s~~~dg------~i~iwd~~~~~~~~~~~~--~~~~v~~i~~~~~~~~l~~~~~d~~---v~i~~~~~~~~~~~  346 (517)
                      ++..++.||.++      .+..||..+++....-..  .......+  .-++..++.||.++.   -.++.||..++.-.
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~  371 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT--VFNNRIYVIGGIYNSISLNTVESWKPGESKWR  371 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE--EECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence            456667776543      577888877765332111  11112222  236777788876532   12677787765433


Q ss_pred             eeeCcCCCceEEEEEccCCCEEEEEeCC------CcEEEEECCCceEEeec-cCCC-eeEEEEcCCCCEEEEEeCC----
Q 042434          347 AWRGTRIPKVLDLAVTPDGENLISVLSD------KDIRILNLGTYAERVIS-EEHP-ITSLSVSVDCKNFIVNLNS----  414 (517)
Q Consensus       347 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~-~~~~-i~~~~~s~~~~~l~~~~~d----  414 (517)
                      .......+........-+++..+.|+.+      ..+..||..+.+-.... ...+ ....+...++..++.|+.+    
T Consensus       372 ~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~  451 (534)
T PHA03098        372 EEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDN  451 (534)
T ss_pred             eCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCC
Confidence            3222111111111223356666666632      35889998876621111 1111 1111222355666666542    


Q ss_pred             ----CeEEEEEcCCC-CccceEEeCcccCceEEEeecCCCCCcEEEEecCC-----CcEEEEecCCCc
Q 042434          415 ----QEIHMWDVAGK-WEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSEN-----SQIYIWNRRNSK  472 (517)
Q Consensus       415 ----~~i~~~d~~~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~  472 (517)
                          ..+..||..+. |............   ...+  ..+++.++.|+.+     ..+.+||..+.+
T Consensus       452 ~~~~~~v~~yd~~~~~W~~~~~~~~~r~~---~~~~--~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        452 IKVYNIVESYNPVTNKWTELSSLNFPRIN---ASLC--IFNNKIYVVGGDKYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             CcccceEEEecCCCCceeeCCCCCccccc---ceEE--EECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence                23788888653 2222211111111   1111  1267777777754     467888877654

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.59  E-value=0.51  Score=42.42  Aligned_cols=145  Identities=18%  Similarity=0.187  Sum_probs=89.1

Q ss_pred             ceEEEEEccCCCEEEEEe---CCCcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEE-cCCCCccce
Q 042434          355 KVLDLAVTPDGENLISVL---SDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWD-VAGKWEKPF  430 (517)
Q Consensus       355 ~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d-~~~~~~~~~  430 (517)
                      .+.+.+++++++.++...   ....++++.......... ....+...+|++++....+...+....++. ...+.....
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~  103 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPV  103 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeE
Confidence            688899999999877766   334566665544333322 445888899999987777766666666663 222212222


Q ss_pred             EEeCcccCceEEEeecCCCCCcEEEEec---CCCcEEEEecC---CC------ceeEEecCCCCCeeEEEecCCCCcEEE
Q 042434          431 KYTGHSQNKYVIRSCFGGLDGTFIASGS---ENSQIYIWNRR---NS------KPIEILSGHSMTVNCVSWNPKRPKMLA  498 (517)
Q Consensus       431 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~iwd~~---~~------~~~~~~~~h~~~v~~v~~~~~~~~~l~  498 (517)
                      ......... .|..+.+||||..++...   .++.|++--+.   .+      .++.........+++++|.+++ .+++
T Consensus       104 ~v~~~~~~~-~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~-~L~V  181 (253)
T PF10647_consen  104 EVDWPGLRG-RITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS-TLVV  181 (253)
T ss_pred             EecccccCC-ceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC-EEEE
Confidence            222221111 577777899999887765   35677776543   23      1222222345689999999998 4555


Q ss_pred             EeeC
Q 042434          499 SASD  502 (517)
Q Consensus       499 s~~~  502 (517)
                      .+..
T Consensus       182 ~~~~  185 (253)
T PF10647_consen  182 LGRS  185 (253)
T ss_pred             EeCC
Confidence            4443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.59  E-value=0.14  Score=49.06  Aligned_cols=147  Identities=17%  Similarity=0.192  Sum_probs=85.0

Q ss_pred             CcEEEEEECCCCCEEEEee-----------CCC-cEEEEEecCC-CeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCC
Q 042434          223 NEVWFVQFSNNGEYLASSS-----------SDC-SAIIWKVLED-SKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAE  289 (517)
Q Consensus       223 ~~v~~~~~s~~~~~l~t~~-----------~dg-~i~iw~~~~~-~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg  289 (517)
                      .....++|.++|+++++-.           ..+ .|.+++-.++ ........+...-.....+++.+++ .++ ++...
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~   91 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD   91 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence            4566889999999777642           223 6766654322 2222333443334456889999988 444 44443


Q ss_pred             eEEEEECCC-----CcE--E-EEeCC----CCCceEEEEEeCCCCeEEEeeCCCc-----------------eeEEEEeC
Q 042434          290 VLKLWDVET-----GIC--K-HTFGD----HGFIVSSCAWFPDSKRLVCGSSDTE-----------------KGIFMCDC  340 (517)
Q Consensus       290 ~i~iwd~~~-----~~~--~-~~~~~----~~~~v~~i~~~~~~~~l~~~~~d~~-----------------v~i~~~~~  340 (517)
                      ..++.|...     ++.  + ..+..    +......++|.|||.+.++-+..+.                 -.++.++.
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p  171 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP  171 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence            333434421     121  1 12222    1344678999999987665542100                 13788888


Q ss_pred             CCCeeEeeeCcCCCceEEEEEccCCCEEEEEe
Q 042434          341 DGNEIKAWRGTRIPKVLDLAVTPDGENLISVL  372 (517)
Q Consensus       341 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  372 (517)
                      .+.....+.... .....++|+++|+.+++-.
T Consensus       172 dg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       172 DGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             CCCeEEEEecCc-CCCccceECCCCCEEEEcc
Confidence            776666554433 3567889999988876543

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=96.56  E-value=0.48  Score=41.63  Aligned_cols=212  Identities=12%  Similarity=0.008  Sum_probs=138.1

Q ss_pred             CEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEee
Q 042434          269 PVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAW  348 (517)
Q Consensus       269 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~  348 (517)
                      .-..++-.|||..-+++...|.|--.|..+|+....--+.......|..-|||..-++-+...   |..++.++..+..+
T Consensus        63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~a---I~R~dpkt~evt~f  139 (353)
T COG4257          63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGLA---IGRLDPKTLEVTRF  139 (353)
T ss_pred             CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcce---eEEecCcccceEEe
Confidence            345677788998888888888888889999987665445666667788888888776654442   77777766666555


Q ss_pred             eC---cCCCceEEEEEccCCCEEEEEeCC---------CcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCCe
Q 042434          349 RG---TRIPKVLDLAVTPDGENLISVLSD---------KDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQE  416 (517)
Q Consensus       349 ~~---~~~~~i~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~  416 (517)
                      ..   +.........|.+.|+.-+++...         +.|++|+.        ........++..|+|...++.-.++.
T Consensus       140 ~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpa--------PqG~gpyGi~atpdGsvwyaslagna  211 (353)
T COG4257         140 PLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPA--------PQGGGPYGICATPDGSVWYASLAGNA  211 (353)
T ss_pred             ecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeecc--------CCCCCCcceEECCCCcEEEEeccccc
Confidence            43   233467788999999988887532         23444443        23456788999999999888888888


Q ss_pred             EEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCce-eEEecCCCCCeeEEEecCCC
Q 042434          417 IHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKP-IEILSGHSMTVNCVSWNPKR  493 (517)
Q Consensus       417 i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~v~~~~~~  493 (517)
                      |...|.......+.  ..........+-++.+|.|+.-++....+.++-+|..+..- -..+.+....-.++.....+
T Consensus       212 iaridp~~~~aev~--p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~g  287 (353)
T COG4257         212 IARIDPFAGHAEVV--PQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHG  287 (353)
T ss_pred             eEEcccccCCccee--cCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCC
Confidence            88888765422222  11111111233444578888888877788888888665432 12233333444455554444

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.52  E-value=0.24  Score=48.23  Aligned_cols=170  Identities=15%  Similarity=0.218  Sum_probs=95.1

Q ss_pred             CcEEEEEECCCCCEE-EEee--CCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCC----CCeEEEEeCCCeEEEEE
Q 042434          223 NEVWFVQFSNNGEYL-ASSS--SDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPD----DTKLLTCGNAEVLKLWD  295 (517)
Q Consensus       223 ~~v~~~~~s~~~~~l-~t~~--~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~----~~~l~s~~~dg~i~iwd  295 (517)
                      .+|..++|. ||+.+ .|.-  .+|.+++=|.      ..    -+.-..|..+.|.|-    ...+++.-....|.||.
T Consensus        20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds------~v----iGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWq   88 (671)
T PF15390_consen   20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS------KV----IGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQ   88 (671)
T ss_pred             ccccceEec-CCCEEEEEeeeeeCCccccCCc------cE----eeccceeeeeeecCcccCCCCceEEEeccceEEEEE
Confidence            467778885 44444 3331  2333333221      12    223356899999984    33455556677999998


Q ss_pred             CC-----CCcEEEEeCC-----CCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCC
Q 042434          296 VE-----TGICKHTFGD-----HGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDG  365 (517)
Q Consensus       296 ~~-----~~~~~~~~~~-----~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  365 (517)
                      +.     +++.+..-..     ..--...+.|+|....|++-.....-.++....++..++.-. ...+.|.|.+|.+||
T Consensus        89 L~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG  167 (671)
T PF15390_consen   89 LCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDG  167 (671)
T ss_pred             eccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcC
Confidence            74     2222221111     111224578999988887766554322333444444444433 334689999999999


Q ss_pred             CEEEEEeCC-CcEEEEECCCce------EEeeccCCCeeEEEEcCC
Q 042434          366 ENLISVLSD-KDIRILNLGTYA------ERVISEEHPITSLSVSVD  404 (517)
Q Consensus       366 ~~l~~~~~d-g~i~i~d~~~~~------~~~~~~~~~i~~~~~s~~  404 (517)
                      +.++++-.. =.-++||-....      ...+.-++.|.++.-.-|
T Consensus       168 ~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~d  213 (671)
T PF15390_consen  168 QRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATVD  213 (671)
T ss_pred             CEEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEecc
Confidence            987766443 356788864433      333444455555544433

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.48  E-value=0.0079  Score=50.81  Aligned_cols=138  Identities=14%  Similarity=0.035  Sum_probs=80.7

Q ss_pred             EEEeCCCeEEEEECCCCcEEEE-eCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEE
Q 042434          283 LTCGNAEVLKLWDVETGICKHT-FGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAV  361 (517)
Q Consensus       283 ~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~  361 (517)
                      ...+.||.|.-+++..-+.... -..+...   .....-+..+++|+.+|.+.+|.|+..+................+..
T Consensus        34 ~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~  110 (238)
T KOG2444|consen   34 RATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPN  110 (238)
T ss_pred             ccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceecccc
Confidence            3446677777666543221110 0011111   11122356799999999988888876665544444433323333444


Q ss_pred             ccCCCEEEEEeCCCcEEEEECCCce--EEeeccC-CCeeEEEEcCCCCEEEEE--eCCCeEEEEEcC
Q 042434          362 TPDGENLISVLSDKDIRILNLGTYA--ERVISEE-HPITSLSVSVDCKNFIVN--LNSQEIHMWDVA  423 (517)
Q Consensus       362 ~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~-~~i~~~~~s~~~~~l~~~--~~d~~i~~~d~~  423 (517)
                      ..++.+..++..+|.|+.|++.-.+  .....|. .+......+..++.+..+  +.+..++.|++.
T Consensus       111 ~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  111 GRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             ccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence            4566688999999999999987766  2333333 445555555555666666  666667777764

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.30  E-value=1.1  Score=43.01  Aligned_cols=76  Identities=11%  Similarity=0.112  Sum_probs=51.9

Q ss_pred             EEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCC-eeEEEecCC-----------------CCcEEEEeeCC
Q 042434          442 IRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMT-VNCVSWNPK-----------------RPKMLASASDD  503 (517)
Q Consensus       442 i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~-v~~v~~~~~-----------------~~~~l~s~~~d  503 (517)
                      +..+..+|++++.|+...=|.|.++|+.++..++.++|-.+. +.-+.....                 .-.+++-+..-
T Consensus       310 ~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyaprR  389 (415)
T PF14655_consen  310 GESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPRR  389 (415)
T ss_pred             EEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEeccC
Confidence            445566899999998877799999999999888887764432 111111110                 11244556678


Q ss_pred             CcEEEeCCCCCCCC
Q 042434          504 HTIRIWGPCQSSEV  517 (517)
Q Consensus       504 g~v~iw~~~~~~~v  517 (517)
                      |.|-||.+.+|.+|
T Consensus       390 g~lEvW~~~~g~Rv  403 (415)
T PF14655_consen  390 GILEVWSMRQGPRV  403 (415)
T ss_pred             CeEEEEecCCCCEE
Confidence            99999999988754

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.09  E-value=1  Score=42.79  Aligned_cols=181  Identities=13%  Similarity=0.121  Sum_probs=85.9

Q ss_pred             EEEECCCCCEEEEe--eC----CCcEEEEEecCCCeeeEEEEeccC---CCCEEEEEECCCCCeEEEEeC----------
Q 042434          227 FVQFSNNGEYLASS--SS----DCSAIIWKVLEDSKLTLKHTLRSH---QNPVSFVAWSPDDTKLLTCGN----------  287 (517)
Q Consensus       227 ~~~~s~~~~~l~t~--~~----dg~i~iw~~~~~~~~~~~~~~~~h---~~~v~~l~~s~~~~~l~s~~~----------  287 (517)
                      .+-.-|+|+.++++  ..    -|-+.+.|-+   .+.........   ..--..+.|.|..+.++|...          
T Consensus       134 T~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~---tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf  210 (461)
T PF05694_consen  134 TVHCLPDGRIMISALGDADGNGPGGFVLLDGE---TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGF  210 (461)
T ss_dssp             EEEE-SS--EEEEEEEETTS-S--EEEEE-TT---T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT--
T ss_pred             eeeecCCccEEEEeccCCCCCCCCcEEEEcCc---cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCC
Confidence            34445789888875  22    2346666653   23444444332   223456777888888887642          


Q ss_pred             ----------CCeEEEEECCCCcEEEEeCCCC--CceEEEEEeCC--CCeEEE-eeCCCceeEEEEeCC-C-----CeeE
Q 042434          288 ----------AEVLKLWDVETGICKHTFGDHG--FIVSSCAWFPD--SKRLVC-GSSDTEKGIFMCDCD-G-----NEIK  346 (517)
Q Consensus       288 ----------dg~i~iwd~~~~~~~~~~~~~~--~~v~~i~~~~~--~~~l~~-~~~d~~v~i~~~~~~-~-----~~~~  346 (517)
                                ..++.+||+.+.+.++++.-..  ..+..+.|..+  ..+=++ +.-..+  ||.|-.. .     +.+.
T Consensus       211 ~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~--i~~~~k~~~g~W~a~kVi  288 (461)
T PF05694_consen  211 NPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSS--IWRFYKDDDGEWAAEKVI  288 (461)
T ss_dssp             -TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EE--EEEEEE-ETTEEEEEEEE
T ss_pred             ChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccce--EEEEEEcCCCCeeeeEEE
Confidence                      3489999999999999886432  34567777654  334333 333444  7766542 1     1111


Q ss_pred             eeeCc--------C--------CCceEEEEEccCCCEEEEEe-CCCcEEEEECCCce-E-----Eeec------------
Q 042434          347 AWRGT--------R--------IPKVLDLAVTPDGENLISVL-SDKDIRILNLGTYA-E-----RVIS------------  391 (517)
Q Consensus       347 ~~~~~--------~--------~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~-~-----~~~~------------  391 (517)
                      .+...        .        .+-|+++.+|.|.++|.+.. ..|.|+.||+.... .     ..+.            
T Consensus       289 ~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~  368 (461)
T PF05694_consen  289 DIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVK  368 (461)
T ss_dssp             EE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS-
T ss_pred             ECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCcccc
Confidence            11110        1        13478999999999887665 58899999998754 1     1111            


Q ss_pred             ---cCCCeeEEEEcCCCCEEEEEe
Q 042434          392 ---EEHPITSLSVSVDCKNFIVNL  412 (517)
Q Consensus       392 ---~~~~i~~~~~s~~~~~l~~~~  412 (517)
                         ..+...-+..|.||+.+.+.+
T Consensus       369 g~~l~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  369 GKRLRGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             -----S----EEE-TTSSEEEEE-
T ss_pred             ccccCCCCCeEEEccCCeEEEEEe
Confidence               111236677888888877654

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PHA02790 Kelch-like protein; Provisional

Probab=96.04  E-value=0.63  Score=46.41  Aligned_cols=148  Identities=8%  Similarity=-0.059  Sum_probs=71.6

Q ss_pred             CCCEEEEeeCCC-----cEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCC--eEEEEECCCCcEEEEe
Q 042434          233 NGEYLASSSSDC-----SAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAE--VLKLWDVETGICKHTF  305 (517)
Q Consensus       233 ~~~~l~t~~~dg-----~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~  305 (517)
                      ++..+++||.++     .+..||..++ .+.....+.........+.  -++...+.||.++  .+..||..+++-...-
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~-~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~  347 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISN-NWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMP  347 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCC-EEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence            456667777543     4556776543 2222222221111122222  3577777777643  5788887666433221


Q ss_pred             CCCCCceEEEEEeCCCCeEEEeeCCCc-eeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCC
Q 042434          306 GDHGFIVSSCAWFPDSKRLVCGSSDTE-KGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGT  384 (517)
Q Consensus       306 ~~~~~~v~~i~~~~~~~~l~~~~~d~~-v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  384 (517)
                      .-...........-+|+..+.|+.++. ..+..||+.+..-..............+..-+++..+.|   |.+.+||..+
T Consensus       348 ~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~  424 (480)
T PHA02790        348 SLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG---RNAEFYCESS  424 (480)
T ss_pred             CCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC---CceEEecCCC
Confidence            111111111222236777788876543 225667776554333222211111112223355555555   3577899877


Q ss_pred             ce
Q 042434          385 YA  386 (517)
Q Consensus       385 ~~  386 (517)
                      .+
T Consensus       425 ~~  426 (480)
T PHA02790        425 NT  426 (480)
T ss_pred             Cc
Confidence            66

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.02  E-value=2.5  Score=44.43  Aligned_cols=227  Identities=13%  Similarity=0.136  Sum_probs=112.8

Q ss_pred             CCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCc--------eEEEEEeC----------------CCCeEEEeeCCCcee
Q 042434          279 DTKLLTCGNAEVLKLWDVETGICKHTFGDHGFI--------VSSCAWFP----------------DSKRLVCGSSDTEKG  334 (517)
Q Consensus       279 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--------v~~i~~~~----------------~~~~l~~~~~d~~v~  334 (517)
                      +..++.++.++.|.-.|..+|+.+-++......        ...+++..                .+..++.++.|+.  
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~--  271 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDAR--  271 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCe--
Confidence            557777888899999999999988877533211        11233321                2347888888887  


Q ss_pred             EEEEeCCC-CeeEeeeCcC-----------CCceEEEEEcc--CCCEEEEEeC----------CCcEEEEECCCceEEe-
Q 042434          335 IFMCDCDG-NEIKAWRGTR-----------IPKVLDLAVTP--DGENLISVLS----------DKDIRILNLGTYAERV-  389 (517)
Q Consensus       335 i~~~~~~~-~~~~~~~~~~-----------~~~i~~~~~~~--~~~~l~~~~~----------dg~i~i~d~~~~~~~~-  389 (517)
                      ++-.|..+ +.+..+....           ......+.-.|  .+..+++|+.          +|.|+-+|.++++..- 
T Consensus       272 LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~  351 (764)
T TIGR03074       272 LIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA  351 (764)
T ss_pred             EEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence            77778764 3333221110           00000111111  1345666643          6889999999998322 


Q ss_pred             eccCCCeeEEEEcCCCCEEEEEeCCC-eEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEec
Q 042434          390 ISEEHPITSLSVSVDCKNFIVNLNSQ-EIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNR  468 (517)
Q Consensus       390 ~~~~~~i~~~~~s~~~~~l~~~~~d~-~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~  468 (517)
                      .....+... ..-+.+.....++.+. ...-+|.+.+  .+..-.+.......      . ..+.....-..+.|.-.|.
T Consensus       352 ~~~g~p~~~-~~~~~g~~~~~gg~n~W~~~s~D~~~g--lvy~ptGn~~pd~~------g-~~r~~~~n~y~~slvALD~  421 (764)
T TIGR03074       352 WDPGNPDPT-APPAPGETYTRNTPNSWSVASYDEKLG--LVYLPMGNQTPDQW------G-GDRTPADEKYSSSLVALDA  421 (764)
T ss_pred             EecCCCCcc-cCCCCCCEeccCCCCccCceEEcCCCC--eEEEeCCCcccccc------C-CccccCcccccceEEEEeC
Confidence            221111110 0011233222222221 2333443332  11111111110000      0 0000001122456778888


Q ss_pred             CCCceeEEecCCCCCe---------eEEEecC-CC--CcEEEEeeCCCcEEEeCCCCCCCC
Q 042434          469 RNSKPIEILSGHSMTV---------NCVSWNP-KR--PKMLASASDDHTIRIWGPCQSSEV  517 (517)
Q Consensus       469 ~~~~~~~~~~~h~~~v---------~~v~~~~-~~--~~~l~s~~~dg~v~iw~~~~~~~v  517 (517)
                      ++|+..-.++.....+         .=+.+.. +|  ...++.++.+|.+.+.|-.+|+.+
T Consensus       422 ~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l  482 (764)
T TIGR03074       422 TTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPI  482 (764)
T ss_pred             CCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEE
Confidence            9998877776411111         1112222 34  127899999999999999998863

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.96  E-value=1.2  Score=40.11  Aligned_cols=147  Identities=14%  Similarity=0.123  Sum_probs=88.2

Q ss_pred             cEEEEEECCCCCEEEEee-CCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEE-CCCCcE
Q 042434          224 EVWFVQFSNNGEYLASSS-SDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWD-VETGIC  301 (517)
Q Consensus       224 ~v~~~~~s~~~~~l~t~~-~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd-~~~~~~  301 (517)
                      .+.+.++|++|+.+|... .++.-.+|-...+.......  .  ...+....|++++...+....+...+++. ..++..
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~--~--g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~  100 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL--T--GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG  100 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec--c--CCccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence            788999999999887665 23333444443333322221  2  34788889999987777766666666664 333332


Q ss_pred             EE-EeCCC--CCceEEEEEeCCCCeEEEeeC---CCceeEEEEeC----CCCee-----EeeeCcCCCceEEEEEccCCC
Q 042434          302 KH-TFGDH--GFIVSSCAWFPDSKRLVCGSS---DTEKGIFMCDC----DGNEI-----KAWRGTRIPKVLDLAVTPDGE  366 (517)
Q Consensus       302 ~~-~~~~~--~~~v~~i~~~~~~~~l~~~~~---d~~v~i~~~~~----~~~~~-----~~~~~~~~~~i~~~~~~~~~~  366 (517)
                      .. .....  ...|..+.++|||..++....   ++.  +++-..    .+...     ..........+..+.|.+++.
T Consensus       101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~--v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~  178 (253)
T PF10647_consen  101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGR--VYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST  178 (253)
T ss_pred             eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCe--EEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE
Confidence            21 22222  228999999999999887662   344  444322    22011     111112234789999999998


Q ss_pred             EEEEEeCCCc
Q 042434          367 NLISVLSDKD  376 (517)
Q Consensus       367 ~l~~~~~dg~  376 (517)
                      +++.+...+.
T Consensus       179 L~V~~~~~~~  188 (253)
T PF10647_consen  179 LVVLGRSAGG  188 (253)
T ss_pred             EEEEeCCCCC
Confidence            8777765543

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.85  E-value=1.7  Score=41.31  Aligned_cols=196  Identities=14%  Similarity=0.134  Sum_probs=89.9

Q ss_pred             CCCEEEEee-CCCcEEEEEecCCC-eeeEEEEecc---CC----CCEEEEEECCCCCeEEEEe--C----CCeEEEEECC
Q 042434          233 NGEYLASSS-SDCSAIIWKVLEDS-KLTLKHTLRS---HQ----NPVSFVAWSPDDTKLLTCG--N----AEVLKLWDVE  297 (517)
Q Consensus       233 ~~~~l~t~~-~dg~i~iw~~~~~~-~~~~~~~~~~---h~----~~v~~l~~s~~~~~l~s~~--~----dg~i~iwd~~  297 (517)
                      +.++|+..+ ..+.|.|.|+.++. ..+..+++..   +.    ..-..+-.-|+|+.++|+-  .    -|-+.+.|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            456777766 67889999997433 3344444432   11    1223334457888888752  2    3468889988


Q ss_pred             CCcEEEEeCCC---CCceEEEEEeCCCCeEEEeeCCC------------------ceeEEEEeCCCCeeEe-eeCcCCC-
Q 042434          298 TGICKHTFGDH---GFIVSSCAWFPDSKRLVCGSSDT------------------EKGIFMCDCDGNEIKA-WRGTRIP-  354 (517)
Q Consensus       298 ~~~~~~~~~~~---~~~v~~i~~~~~~~~l~~~~~d~------------------~v~i~~~~~~~~~~~~-~~~~~~~-  354 (517)
                      +.+........   ..--...-|.|..+.++++....                  --++.+||.......+ +.....+ 
T Consensus       166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~  245 (461)
T PF05694_consen  166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ  245 (461)
T ss_dssp             T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred             cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence            88877776542   23345677888888888764321                  0138889988765543 3333322 


Q ss_pred             ceEEEEEccC--CCEE-EEEeCCCcEEEE-ECCCce---EEeec--c------------------CCCeeEEEEcCCCCE
Q 042434          355 KVLDLAVTPD--GENL-ISVLSDKDIRIL-NLGTYA---ERVIS--E------------------EHPITSLSVSVDCKN  407 (517)
Q Consensus       355 ~i~~~~~~~~--~~~l-~~~~~dg~i~i~-d~~~~~---~~~~~--~------------------~~~i~~~~~s~~~~~  407 (517)
                      ....+.|..+  ..+- +.+.-.++|..| ....+.   ...+.  .                  ..-++.+.+|.|.++
T Consensus       246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf  325 (461)
T PF05694_consen  246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF  325 (461)
T ss_dssp             EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred             ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence            3456666544  4433 333334444443 323332   11111  0                  234789999999999


Q ss_pred             EEEEeC-CCeEEEEEcCCCCcc
Q 042434          408 FIVNLN-SQEIHMWDVAGKWEK  428 (517)
Q Consensus       408 l~~~~~-d~~i~~~d~~~~~~~  428 (517)
                      |.+++- .|.++.||+.....+
T Consensus       326 LYvs~W~~GdvrqYDISDP~~P  347 (461)
T PF05694_consen  326 LYVSNWLHGDVRQYDISDPFNP  347 (461)
T ss_dssp             EEEEETTTTEEEEEE-SSTTS-
T ss_pred             EEEEcccCCcEEEEecCCCCCC
Confidence            887765 899999999775333

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=95.83  E-value=1.3  Score=39.53  Aligned_cols=274  Identities=12%  Similarity=0.054  Sum_probs=142.2

Q ss_pred             ccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc
Q 042434          221 HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI  300 (517)
Q Consensus       221 h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~  300 (517)
                      -.+-+..+.++.+  +...+..+.-++|.|+.+..+...+..+.. .+.-.++..  .|++..++..|.-+.+.|+.+..
T Consensus        85 ~~~l~~Dv~vse~--yvyvad~ssGL~IvDIS~P~sP~~~~~lnt-~gyaygv~v--sGn~aYVadlddgfLivdvsdps  159 (370)
T COG5276          85 ARDLFADVRVSEE--YVYVADWSSGLRIVDISTPDSPTLIGFLNT-DGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPS  159 (370)
T ss_pred             hhhhhheeEeccc--EEEEEcCCCceEEEeccCCCCcceeccccC-CceEEEEEe--cCCEEEEeeccCcEEEEECCCCC
Confidence            3455666777654  555556666799999987765544444332 233444444  48888888866677788886643


Q ss_pred             ---EEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeee--CcCCCceEEEEEccCCCEEEEEeCCC
Q 042434          301 ---CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWR--GTRIPKVLDLAVTPDGENLISVLSDK  375 (517)
Q Consensus       301 ---~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg  375 (517)
                         ....+......-..++.+  |++-..+..|+-  +.+.|........+.  ....+.+.++..+++..+++.  .+-
T Consensus       160 sP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~G--L~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vv--y~e  233 (370)
T COG5276         160 SPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGG--LTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVV--YDE  233 (370)
T ss_pred             CceeeeeeccCCCCceeEEEe--cCeEEEEEeCCC--eEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEE--ccc
Confidence               333443444444556665  667777777777  666666543222222  222235777777766555444  344


Q ss_pred             cEEEEECCCce-EEeec--cCCCeeEE-EEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCccc--CceEEEeecCCC
Q 042434          376 DIRILNLGTYA-ERVIS--EEHPITSL-SVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQ--NKYVIRSCFGGL  449 (517)
Q Consensus       376 ~i~i~d~~~~~-~~~~~--~~~~i~~~-~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~--~~~~i~~~~~s~  449 (517)
                      -+.+-|..+.+ ...+.  ....+.++ .+.-.+++..+...+..+.+.|+.+...+...-.-...  ....++     .
T Consensus       234 gvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~-----a  308 (370)
T COG5276         234 GVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIR-----A  308 (370)
T ss_pred             ceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceE-----E
Confidence            46777776655 22221  12222222 33445667777777777777777654222111000000  000111     1


Q ss_pred             CCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCC
Q 042434          450 DGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPC  512 (517)
Q Consensus       450 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~  512 (517)
                      .+.++..+..+ ...+-+....+......+-...+.+.+.+-+. +.+.+...++.+.||+..
T Consensus       309 y~~y~yiadkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~-q~~y~~d~~~gl~i~~~~  369 (370)
T COG5276         309 YGNYNYIADKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDT-QIIYSTDYNGGLSIIEYL  369 (370)
T ss_pred             ecCeeEeccCC-ceEEEeCCChhhcccccCcceEeeecceEEEe-eEEEEeecCCCEEEEEec
Confidence            23344443333 33344443332222222222222333333344 467888889999999753

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.83  E-value=1.7  Score=41.24  Aligned_cols=127  Identities=6%  Similarity=0.016  Sum_probs=80.5

Q ss_pred             CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEE----EEeCCCCCceEEEEEe
Q 042434          243 DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICK----HTFGDHGFIVSSCAWF  318 (517)
Q Consensus       243 dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~v~~i~~~  318 (517)
                      .|.+.=|-+...+.-.++..-....++|.++.||+|++.||+--.+.+|.+++....+..    .+.+.....|....|+
T Consensus        42 SggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~  121 (657)
T KOG2377|consen   42 SGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWT  121 (657)
T ss_pred             cCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEe
Confidence            344555655432222222333345679999999999999999999999999987433322    1223345668899998


Q ss_pred             CCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEe
Q 042434          319 PDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVL  372 (517)
Q Consensus       319 ~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  372 (517)
                      .+ .-++..+..| +.++..+...+.++....+. -.|.-..|.++.+.++.++
T Consensus       122 ~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~-~nvnWy~yc~et~v~LL~t  172 (657)
T KOG2377|consen  122 SS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHN-LNVNWYMYCPETAVILLST  172 (657)
T ss_pred             cC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcc-cCccEEEEccccceEeeec
Confidence            66 5566655555 23666665555555555444 3677788888887655443

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=95.80  E-value=1.2  Score=39.18  Aligned_cols=241  Identities=12%  Similarity=0.078  Sum_probs=149.5

Q ss_pred             ccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc
Q 042434          221 HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI  300 (517)
Q Consensus       221 h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~  300 (517)
                      ..+.-..++-.|||..-.++...|.|--.|..+++.   ...-.+....-..+..-|||..-++-+.. -|.-.|-++.+
T Consensus        60 ~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev---~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~e  135 (353)
T COG4257          60 NGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEV---ETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLE  135 (353)
T ss_pred             CCCCccccccCCCCceEEecCccccceecCCCCCce---EEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccc
Confidence            345566778888998888887777777777765532   22223344555677778888766654333 45555555544


Q ss_pred             EEE-Ee--CCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcE
Q 042434          301 CKH-TF--GDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDI  377 (517)
Q Consensus       301 ~~~-~~--~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  377 (517)
                      ..+ .+  +..........|.+.|++-+++.. |.  .=..|.....+..+..........++..|+|..-++.-.+..|
T Consensus       136 vt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~-G~--yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnai  212 (353)
T COG4257         136 VTRFPLPLEHADANLETAVFDPWGNLWFTGQI-GA--YGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAGNAI  212 (353)
T ss_pred             eEEeecccccCCCcccceeeCCCccEEEeecc-cc--ceecCcccCceeeeccCCCCCCcceEECCCCcEEEEeccccce
Confidence            321 11  123556677889999988888763 32  2245666777777777776678899999999998888888888


Q ss_pred             EEEECCCceEEeecc----CCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcE
Q 042434          378 RILNLGTYAERVISE----EHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTF  453 (517)
Q Consensus       378 ~i~d~~~~~~~~~~~----~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  453 (517)
                      -..|..+.....+..    ......+-.+|.|+.-++....+.+..||.....=....+.+.....+.+..   ...++.
T Consensus       213 aridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rV---D~~grV  289 (353)
T COG4257         213 ARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRV---DRHGRV  289 (353)
T ss_pred             EEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeee---ccCCcE
Confidence            888887765222221    2234556667788888887778888888876542222333343333333332   333444


Q ss_pred             EEEecCCCcEEEEecCCC
Q 042434          454 IASGSENSQIYIWNRRNS  471 (517)
Q Consensus       454 l~~~~~dg~i~iwd~~~~  471 (517)
                      -.+--.-|.|.-+|.++.
T Consensus       290 W~sea~agai~rfdpeta  307 (353)
T COG4257         290 WLSEADAGAIGRFDPETA  307 (353)
T ss_pred             EeeccccCceeecCcccc
Confidence            333333455666665543

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.67  E-value=0.17  Score=52.95  Aligned_cols=147  Identities=12%  Similarity=-0.033  Sum_probs=91.5

Q ss_pred             CcEEEEEECCCCCEEEEe--eCCCcEEEEEecCCCee--------eEEEEeccCCCCEEEEEECCCC-CeEEEEeCCCeE
Q 042434          223 NEVWFVQFSNNGEYLASS--SSDCSAIIWKVLEDSKL--------TLKHTLRSHQNPVSFVAWSPDD-TKLLTCGNAEVL  291 (517)
Q Consensus       223 ~~v~~~~~s~~~~~l~t~--~~dg~i~iw~~~~~~~~--------~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i  291 (517)
                      -+|..+..++|+...++.  +.+-.|..||+.+-...        ....+......-..++.|.|.- ...+.+..|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            466667777787655543  33446888888532111        0111122223456778898853 335666788888


Q ss_pred             EEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeC---cCCCceEEEEEccCCCEE
Q 042434          292 KLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRG---TRIPKVLDLAVTPDGENL  368 (517)
Q Consensus       292 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l  368 (517)
                      ++..+.-......--......++++|+|.|+.++.|-..|+  +..|.........+..   .....|.+++|.....++
T Consensus       181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt--~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~efl  258 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGT--EVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFL  258 (1405)
T ss_pred             hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCe--EEEeecccceeecccCCCcCCCcceeEEEEecceeEE
Confidence            88876433222221245677899999999999999999999  7767666543333322   223478999998877766


Q ss_pred             EEE
Q 042434          369 ISV  371 (517)
Q Consensus       369 ~~~  371 (517)
                      ++-
T Consensus       259 vvy  261 (1405)
T KOG3630|consen  259 VVY  261 (1405)
T ss_pred             EEe
Confidence            543

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=95.64  E-value=0.002  Score=60.37  Aligned_cols=145  Identities=14%  Similarity=0.168  Sum_probs=105.4

Q ss_pred             eEEEEEccCCCEEEEEeCCCcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEE-EeCCCeEEEEEcCCCCccceEEeC
Q 042434          356 VLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIV-NLNSQEIHMWDVAGKWEKPFKYTG  434 (517)
Q Consensus       356 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~-~~~d~~i~~~d~~~~~~~~~~~~~  434 (517)
                      .....|-+.+..++.++.+..+..||-................++|..++..+++ +-..+.+.+||+.+.........+
T Consensus        37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg  116 (615)
T KOG2247|consen   37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG  116 (615)
T ss_pred             cceeeEecCCCceehhhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC
Confidence            3445677777778888888899999876655444455556677888887776554 456789999999765333333333


Q ss_pred             cccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcE
Q 042434          435 HSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTI  506 (517)
Q Consensus       435 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v  506 (517)
                      ...    -....|++.+..++.|...|.+.|++..+.+.+...-.|...+++++|.+.+  +.+.++.|..+
T Consensus       117 ~~s----~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd--~vil~dcd~~L  182 (615)
T KOG2247|consen  117 TSS----KSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED--YVILCDCDNTL  182 (615)
T ss_pred             cch----HHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc--eeeecCcHHHH
Confidence            222    2345678889999999999999999988887777666699999999999987  56667666543

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.57  E-value=1.1  Score=42.85  Aligned_cols=142  Identities=16%  Similarity=0.102  Sum_probs=82.3

Q ss_pred             CCEEEEEECCCCCeEEEEe-----------CCC-eEEEEECCC--Cc--EEEEeCCCCCceEEEEEeCCCCeEEEeeCCC
Q 042434          268 NPVSFVAWSPDDTKLLTCG-----------NAE-VLKLWDVET--GI--CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDT  331 (517)
Q Consensus       268 ~~v~~l~~s~~~~~l~s~~-----------~dg-~i~iwd~~~--~~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~  331 (517)
                      .....|+|.++|+++++-.           ..+ .|.+++-.+  |+  ....+...-.....+++.+++ .++ ++...
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~   91 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD   91 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence            4457789999998777643           223 677776543  33  233443334456889999888 444 44333


Q ss_pred             ceeEEEE-eCCC------CeeEe---eeCc---CCCceEEEEEccCCCEEEEEeC-------------------CCcEEE
Q 042434          332 EKGIFMC-DCDG------NEIKA---WRGT---RIPKVLDLAVTPDGENLISVLS-------------------DKDIRI  379 (517)
Q Consensus       332 ~v~i~~~-~~~~------~~~~~---~~~~---~~~~i~~~~~~~~~~~l~~~~~-------------------dg~i~i  379 (517)
                         |+.+ +..+      .....   +...   .......+.|.|||.+.++.+.                   .|.|..
T Consensus        92 ---i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r  168 (367)
T TIGR02604        92 ---ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFR  168 (367)
T ss_pred             ---EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEE
Confidence               6655 4332      11111   1111   1224778999999986665442                   145666


Q ss_pred             EECCCceEEeec-cCCCeeEEEEcCCCCEEEEEeCC
Q 042434          380 LNLGTYAERVIS-EEHPITSLSVSVDCKNFIVNLNS  414 (517)
Q Consensus       380 ~d~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~d  414 (517)
                      +|..+....... .......++|+++|+.+++-..+
T Consensus       169 ~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       169 YNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             EecCCCeEEEEecCcCCCccceECCCCCEEEEccCC
Confidence            777665533333 23346789999999887765433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.50  E-value=0.45  Score=47.99  Aligned_cols=112  Identities=18%  Similarity=0.334  Sum_probs=73.1

Q ss_pred             CcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEEC--CCCCeEEEEeCCCeEEEEECC---
Q 042434          223 NEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWS--PDDTKLLTCGNAEVLKLWDVE---  297 (517)
Q Consensus       223 ~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s--~~~~~l~s~~~dg~i~iwd~~---  297 (517)
                      ..+.-+.-|.-++.-++-+....+.|||...+. .+....+ ...+.|.++.|.  |+++.+++.|..+.|.++.-.   
T Consensus        30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~-lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~d  107 (631)
T PF12234_consen   30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGV-LEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYD  107 (631)
T ss_pred             CCcceEeecccCcEEEEECCCCEEEEEEcCCcE-EEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchh
Confidence            344455555555544444445579999997543 4444444 457889999995  688999999999999998431   


Q ss_pred             --C----CcEEEEe--CCC-CCceEEEEEeCCCCeEEEeeCCCceeEEEEeC
Q 042434          298 --T----GICKHTF--GDH-GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDC  340 (517)
Q Consensus       298 --~----~~~~~~~--~~~-~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~  340 (517)
                        +    -..++.+  ..+ ..+|.+..|.++|..++.++..    +++++.
T Consensus       108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNq----lfv~dk  155 (631)
T PF12234_consen  108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQ----LFVFDK  155 (631)
T ss_pred             hhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCE----EEEECC
Confidence              1    1223322  234 3678999999999777665543    666654

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.46  E-value=4.1  Score=42.87  Aligned_cols=28  Identities=21%  Similarity=0.300  Sum_probs=24.1

Q ss_pred             CCeEEEEeCCCeEEEEECCCCcEEEEeC
Q 042434          279 DTKLLTCGNAEVLKLWDVETGICKHTFG  306 (517)
Q Consensus       279 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~  306 (517)
                      +..++.++.|+.+.-.|.++|+....+.
T Consensus       260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg  287 (764)
T TIGR03074       260 ARRIILPTSDARLIALDADTGKLCEDFG  287 (764)
T ss_pred             CCEEEEecCCCeEEEEECCCCCEEEEec
Confidence            4578888999999999999999887763

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.30  E-value=0.32  Score=51.13  Aligned_cols=116  Identities=15%  Similarity=0.072  Sum_probs=76.0

Q ss_pred             CCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEe------ee-----CcCCCceEEEEEccCCC-EEEEEeCCCc
Q 042434          309 GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKA------WR-----GTRIPKVLDLAVTPDGE-NLISVLSDKD  376 (517)
Q Consensus       309 ~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~------~~-----~~~~~~i~~~~~~~~~~-~l~~~~~dg~  376 (517)
                      ..++..+...+|+...++....+...|+.+|...-....      +.     ........++.|+|.-. ..++...|+.
T Consensus       100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls  179 (1405)
T KOG3630|consen  100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS  179 (1405)
T ss_pred             cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence            345566666777766555443333348888876321111      11     11123456778888543 4566778888


Q ss_pred             EEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 042434          377 IRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAG  424 (517)
Q Consensus       377 i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~  424 (517)
                      |++..+....  ..........++++|+|.|+.+++|-..|++.-|....
T Consensus       180 l~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l  229 (1405)
T KOG3630|consen  180 LRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL  229 (1405)
T ss_pred             hhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeeccc
Confidence            8888776544  33345566789999999999999999999999887643

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.20  E-value=2.3  Score=44.31  Aligned_cols=78  Identities=19%  Similarity=0.271  Sum_probs=54.1

Q ss_pred             ccCcEEEEEECCCCCEEEEeeCCCcEEEEEecC----------CCeeeEEEEe--------ccCCCCEEEEEECCC---C
Q 042434          221 HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLE----------DSKLTLKHTL--------RSHQNPVSFVAWSPD---D  279 (517)
Q Consensus       221 h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~----------~~~~~~~~~~--------~~h~~~v~~l~~s~~---~  279 (517)
                      -.-.|..+.+||+|++||..|..|.+ |-.+..          +......+++        ..+...|..+.|+|.   +
T Consensus        83 ~~f~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~  161 (717)
T PF10168_consen   83 PLFEVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD  161 (717)
T ss_pred             CceeEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence            34578999999999999998886644 433321          1111111121        234567999999996   5


Q ss_pred             CeEEEEeCCCeEEEEECCCC
Q 042434          280 TKLLTCGNAEVLKLWDVETG  299 (517)
Q Consensus       280 ~~l~s~~~dg~i~iwd~~~~  299 (517)
                      ..|++-..|+++++||+...
T Consensus       162 ~~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  162 SHLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             CeEEEEecCCEEEEEecCCC
Confidence            88999999999999999654

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.19  E-value=0.22  Score=47.46  Aligned_cols=137  Identities=12%  Similarity=0.138  Sum_probs=80.5

Q ss_pred             cCCCEEE-EEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCC-------EEEEEeCCCeEEEEEcCCCCccceEEe
Q 042434          363 PDGENLI-SVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCK-------NFIVNLNSQEIHMWDVAGKWEKPFKYT  433 (517)
Q Consensus       363 ~~~~~l~-~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~-------~l~~~~~d~~i~~~d~~~~~~~~~~~~  433 (517)
                      .+...++ .|.....++-.|+..++ .........+ -+.+.|..+       .-++|-.+..|.-.|.+-....+....
T Consensus       477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e  555 (776)
T COG5167         477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE  555 (776)
T ss_pred             CCcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence            3444433 34445567777777766 2222233333 667777532       245666677777777654432222211


Q ss_pred             Cccc-CceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEee
Q 042434          434 GHSQ-NKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS  501 (517)
Q Consensus       434 ~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~  501 (517)
                      ...- ......+.. .....|+|+|+..|.|++||.-.-+....+++-...|..+..+.+|..+|+||-
T Consensus       556 sKdY~tKn~Fss~~-tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk  623 (776)
T COG5167         556 SKDYKTKNKFSSGM-TTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK  623 (776)
T ss_pred             ehhccccccccccc-cccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec
Confidence            1110 111111221 334569999999999999997655555567777889999999999976666663

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.10  E-value=1.1  Score=43.08  Aligned_cols=141  Identities=19%  Similarity=0.223  Sum_probs=90.9

Q ss_pred             CCCCeEEE-EeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCC-------eEEEeeCCCceeEEEEeCC--CCeeE
Q 042434          277 PDDTKLLT-CGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSK-------RLVCGSSDTEKGIFMCDCD--GNEIK  346 (517)
Q Consensus       277 ~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~-------~l~~~~~d~~v~i~~~~~~--~~~~~  346 (517)
                      .|.++|+. |+....+.-.|++.|+.+..+..|...  -+.|.|+.+       .-++|-.+..  |+..|++  ++.+.
T Consensus       477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~s--vFrIDPR~~gNKi~  552 (776)
T COG5167         477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYS--VFRIDPRARGNKIK  552 (776)
T ss_pred             CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccc--eEEecccccCCcee
Confidence            34555544 444557888899999999988777654  466777432       2334444545  8888876  44443


Q ss_pred             eeeCcC---CCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEE
Q 042434          347 AWRGTR---IPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWD  421 (517)
Q Consensus       347 ~~~~~~---~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d  421 (517)
                      ......   .....+..-. ...++++++..|.|++||--...  ......+..|..+..+.+|+++++.+. ..+.+.|
T Consensus       553 v~esKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d  630 (776)
T COG5167         553 VVESKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTD  630 (776)
T ss_pred             eeeehhccccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEe
Confidence            332221   1112222222 34589999999999999965443  455566778999999999999887764 4566777


Q ss_pred             cC
Q 042434          422 VA  423 (517)
Q Consensus       422 ~~  423 (517)
                      ++
T Consensus       631 ~~  632 (776)
T COG5167         631 VP  632 (776)
T ss_pred             cc
Confidence            64

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=95.01  E-value=3.2  Score=39.07  Aligned_cols=235  Identities=17%  Similarity=0.167  Sum_probs=117.1

Q ss_pred             CEEEEEECCCCCeEEEEeCCCeEEEEECCCCcE---EEEe----CCCCCceEEEEEeCC----CCeEEEeeCC------C
Q 042434          269 PVSFVAWSPDDTKLLTCGNAEVLKLWDVETGIC---KHTF----GDHGFIVSSCAWFPD----SKRLVCGSSD------T  331 (517)
Q Consensus       269 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~----~~~~~~v~~i~~~~~----~~~l~~~~~d------~  331 (517)
                      ..+.|+|.|||+.+++ ...|.|++++ .++..   +...    .........++++|+    +...++.+..      .
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            3578999999877665 6699999999 45543   2222    233567899999994    3333333321      1


Q ss_pred             ceeEEEEeCCCC--e------e-EeeeC--cCCCceEEEEEccCCCEEEEEeCC-------------CcEEEEECCCce-
Q 042434          332 EKGIFMCDCDGN--E------I-KAWRG--TRIPKVLDLAVTPDGENLISVLSD-------------KDIRILNLGTYA-  386 (517)
Q Consensus       332 ~v~i~~~~~~~~--~------~-~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d-------------g~i~i~d~~~~~-  386 (517)
                      ..+|..|.....  .      + .....  ........+.|.|||.+.++.+..             |.|.-.+..... 
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p  160 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIP  160 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCC
Confidence            223554544322  1      1 11111  122356779999999766665543             234444433210 


Q ss_pred             -------------EEeeccCCCeeEEEEcCC-CCEEEEEeC-CC--eEEEEEcCC--CC---------------------
Q 042434          387 -------------ERVISEEHPITSLSVSVD-CKNFIVNLN-SQ--EIHMWDVAG--KW---------------------  426 (517)
Q Consensus       387 -------------~~~~~~~~~i~~~~~s~~-~~~l~~~~~-d~--~i~~~d~~~--~~---------------------  426 (517)
                                   ......-.....++|+|. |..+++-.. ++  .|.+..--.  +|                     
T Consensus       161 ~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~  240 (331)
T PF07995_consen  161 ADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCP  240 (331)
T ss_dssp             TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-T
T ss_pred             CCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCC
Confidence                         111111223567899998 555443222 22  232221100  00                     


Q ss_pred             ---ccceEEeCcccCceEEEee---cC-CCCCcEEEEecCCCcEEEEecCCCceeE---E-ecCCCCCeeEEEecCCCCc
Q 042434          427 ---EKPFKYTGHSQNKYVIRSC---FG-GLDGTFIASGSENSQIYIWNRRNSKPIE---I-LSGHSMTVNCVSWNPKRPK  495 (517)
Q Consensus       427 ---~~~~~~~~~~~~~~~i~~~---~~-s~~~~~l~~~~~dg~i~iwd~~~~~~~~---~-~~~h~~~v~~v~~~~~~~~  495 (517)
                         .+...+..|... ..+...   .| .-.|.++++.-..+.|....+..+..+.   . +......+.++++.||| .
T Consensus       241 ~~~~P~~~~~~~~ap-~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG-~  318 (331)
T PF07995_consen  241 GFVPPVFAYPPHSAP-TGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDG-A  318 (331)
T ss_dssp             TS---SEEETTT--E-EEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTS-E
T ss_pred             CcCccceeecCcccc-CceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCC-e
Confidence               011112222111 111110   11 1256777777767788888877553222   1 23344589999999999 6


Q ss_pred             EEEEeeCCCcEE
Q 042434          496 MLASASDDHTIR  507 (517)
Q Consensus       496 ~l~s~~~dg~v~  507 (517)
                      ++++.+.+|.|.
T Consensus       319 Lyv~~d~~G~iy  330 (331)
T PF07995_consen  319 LYVSDDSDGKIY  330 (331)
T ss_dssp             EEEEE-TTTTEE
T ss_pred             EEEEECCCCeEe
Confidence            888877888774

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=94.92  E-value=1.8  Score=44.31  Aligned_cols=147  Identities=10%  Similarity=0.091  Sum_probs=91.6

Q ss_pred             CCEEEEeeCCCcEEEEEecCCCeeeE---EEEe----------------ccCCCCEEEEEECC--CCCeEEEEeCCCeEE
Q 042434          234 GEYLASSSSDCSAIIWKVLEDSKLTL---KHTL----------------RSHQNPVSFVAWSP--DDTKLLTCGNAEVLK  292 (517)
Q Consensus       234 ~~~l~t~~~dg~i~iw~~~~~~~~~~---~~~~----------------~~h~~~v~~l~~s~--~~~~l~s~~~dg~i~  292 (517)
                      .++++++. .+.|.||+...-.....   ...+                ......|+.|....  +...|+.|..||.|.
T Consensus        49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~  127 (717)
T PF08728_consen   49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL  127 (717)
T ss_pred             CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence            56777765 57899998753222110   0000                00122355554432  457889999999999


Q ss_pred             EEECCC-------C----c---------EEEEeCCCCCceEEEEEe--CCCCeEEEeeCCCceeEEEEeCCCCee-Eeee
Q 042434          293 LWDVET-------G----I---------CKHTFGDHGFIVSSCAWF--PDSKRLVCGSSDTEKGIFMCDCDGNEI-KAWR  349 (517)
Q Consensus       293 iwd~~~-------~----~---------~~~~~~~~~~~v~~i~~~--~~~~~l~~~~~d~~v~i~~~~~~~~~~-~~~~  349 (517)
                      +|.+++       .    +         +-..+ .....+++++++  ...++||+++....|.|+.+....... ..-.
T Consensus       128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s  206 (717)
T PF08728_consen  128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPS  206 (717)
T ss_pred             EEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccc
Confidence            996621       0    0         01111 235678999998  888899999999998898888742221 1111


Q ss_pred             CcCCCceEEEEEccCC---C---EEEEEeCCCcEEEEEC
Q 042434          350 GTRIPKVLDLAVTPDG---E---NLISVLSDKDIRILNL  382 (517)
Q Consensus       350 ~~~~~~i~~~~~~~~~---~---~l~~~~~dg~i~i~d~  382 (517)
                      ..+...|.+++|-++.   .   .+++++-.|.+.+|++
T Consensus       207 ~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  207 HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            1233468888887643   2   7788899999998887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.92  E-value=2.5  Score=42.79  Aligned_cols=196  Identities=11%  Similarity=0.177  Sum_probs=96.7

Q ss_pred             CeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeC---cCCCceEEEEEccCC
Q 042434          289 EVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRG---TRIPKVLDLAVTPDG  365 (517)
Q Consensus       289 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~  365 (517)
                      -.|+|+++ +|..+....-....+..+.|+.+ ..|++...+|+  +++++..+..+.....   .....|..+.+..+|
T Consensus        64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~-eeLI~v~k~g~--v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G  139 (829)
T KOG2280|consen   64 PYIRIFNI-SGQLLGRILWKHGELIGMGWSDD-EELICVQKDGT--VHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG  139 (829)
T ss_pred             eeEEEEec-cccchHHHHhcCCCeeeecccCC-ceEEEEeccce--EEEeecchhhhcccccccccccCceeEEEEecCc
Confidence            35888886 56666655444458889999965 46677788999  6666666554443211   112245555555555


Q ss_pred             CEEEEEeCCCcEEEE-ECCCceEEee----ccCCCeeEEEEcCCCCE--EEEEeC-CCeEEEEEcCCCCccceEEeCccc
Q 042434          366 ENLISVLSDKDIRIL-NLGTYAERVI----SEEHPITSLSVSVDCKN--FIVNLN-SQEIHMWDVAGKWEKPFKYTGHSQ  437 (517)
Q Consensus       366 ~~l~~~~~dg~i~i~-d~~~~~~~~~----~~~~~i~~~~~s~~~~~--l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~  437 (517)
                        +++-..+|.+.+. +.........    ....+-.+-+..+++..  ++..-. .-...++...........+   ..
T Consensus       140 --Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~---~~  214 (829)
T KOG2280|consen  140 --VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHAL---SW  214 (829)
T ss_pred             --eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceeccccccccc---CC
Confidence              3333445554443 3333221111    11111122222222211  111100 0000111111110111111   11


Q ss_pred             CceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCC-CCCeeEEEecCCC
Q 042434          438 NKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGH-SMTVNCVSWNPKR  493 (517)
Q Consensus       438 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~v~~~~~~  493 (517)
                      ....+.-+..||+.++|+--..+|.|.+-+....+....+... ..+-..++|.-+.
T Consensus       215 ~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd  271 (829)
T KOG2280|consen  215 PNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND  271 (829)
T ss_pred             CCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence            1122444455899999999999999999988877766665521 1222366666443

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=94.87  E-value=2.8  Score=37.77  Aligned_cols=218  Identities=11%  Similarity=0.108  Sum_probs=122.7

Q ss_pred             EEEEEECCCCCeEEEEeCCCeEEEEECC------CC-cEEEEeCC-----CCCceEEEEEeCCCC------------eEE
Q 042434          270 VSFVAWSPDDTKLLTCGNAEVLKLWDVE------TG-ICKHTFGD-----HGFIVSSCAWFPDSK------------RLV  325 (517)
Q Consensus       270 v~~l~~s~~~~~l~s~~~dg~i~iwd~~------~~-~~~~~~~~-----~~~~v~~i~~~~~~~------------~l~  325 (517)
                      -+.|+++|.+.+-++....+...+||..      .. ..+.++..     .....+.+.|+....            .++
T Consensus        25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi  104 (336)
T TIGR03118        25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL  104 (336)
T ss_pred             cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence            4779999999888888888899999986      12 22333321     234677888875433            367


Q ss_pred             EeeCCCceeEEEEeCCCC------eeEeeeCcCCCc-eEEEEEcc--CCCEEEEE-eCCCcEEEEECCCceEEee-ccCC
Q 042434          326 CGSSDTEKGIFMCDCDGN------EIKAWRGTRIPK-VLDLAVTP--DGENLISV-LSDKDIRILNLGTYAERVI-SEEH  394 (517)
Q Consensus       326 ~~~~d~~v~i~~~~~~~~------~~~~~~~~~~~~-i~~~~~~~--~~~~l~~~-~~dg~i~i~d~~~~~~~~~-~~~~  394 (517)
                      .++.||+  |--|...-.      ..........+. ...+++..  .+.+|+.+ -..++|.+||-.-...... ....
T Consensus       105 f~tEdGT--isaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~D  182 (336)
T TIGR03118       105 FVTEDGT--LSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFID  182 (336)
T ss_pred             EEeCCce--EEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccC
Confidence            7788888  666665321      112222221122 23444443  34555444 4678899998643321110 0000


Q ss_pred             C-------------------eeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEe--CcccCceEEE---eecCCCC
Q 042434          395 P-------------------ITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYT--GHSQNKYVIR---SCFGGLD  450 (517)
Q Consensus       395 ~-------------------i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~--~~~~~~~~i~---~~~~s~~  450 (517)
                      +                   |+-..-.++...=+.+..-|.|-+||+...  .++++.  +.-...+.+.   ..+....
T Consensus       183 P~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~--l~~r~as~g~LNaPWG~a~APa~FG~~s  260 (336)
T TIGR03118       183 PALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ--LLRRVASSGRLNAPWGLAIAPESFGSLS  260 (336)
T ss_pred             CCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCc--EEEEeccCCcccCCceeeeChhhhCCCC
Confidence            0                   111111222222233344568999998764  444432  2222222222   2233556


Q ss_pred             CcEEEEecCCCcEEEEecCCCceeEEecCCC------CCeeEEEecC
Q 042434          451 GTFIASGSENSQIYIWNRRNSKPIEILSGHS------MTVNCVSWNP  491 (517)
Q Consensus       451 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~------~~v~~v~~~~  491 (517)
                      |.+|+---.||+|..||..+|+.+..+....      ...+.++|..
T Consensus       261 g~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       261 GALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             CCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence            7788877779999999999999888887543      3467788865

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=94.84  E-value=5.2  Score=40.65  Aligned_cols=233  Identities=13%  Similarity=0.142  Sum_probs=115.5

Q ss_pred             EEECCCCCeEEEEeCCCeEEEEEC-CCCcEEEEeC-CCCCceEEEEEeCC---CCeEEEeeCCCc-eeEEEEeCC-----
Q 042434          273 VAWSPDDTKLLTCGNAEVLKLWDV-ETGICKHTFG-DHGFIVSSCAWFPD---SKRLVCGSSDTE-KGIFMCDCD-----  341 (517)
Q Consensus       273 l~~s~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~-~~~~~v~~i~~~~~---~~~l~~~~~d~~-v~i~~~~~~-----  341 (517)
                      ..++|+.+.+-.|=....|.-|=+ .|.+.+..+. .....|.|+.....   .+..++|-.++. .++......     
T Consensus        33 ~~~s~~sn~IdiGIS~S~ISsYIi~PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~~  112 (670)
T PF10395_consen   33 DDFSPDSNQIDIGISGSAISSYIIKPTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGSTE  112 (670)
T ss_pred             cccCCCCceEEEEeccchhhheecCCCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCcccc
Confidence            356777776655544444444433 2455555554 34566777665432   234445534433 233333332     


Q ss_pred             -----CCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceEEe---e--ccCCC-eeEEEEcC------C
Q 042434          342 -----GNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERV---I--SEEHP-ITSLSVSV------D  404 (517)
Q Consensus       342 -----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---~--~~~~~-i~~~~~s~------~  404 (517)
                           +.....+...-...+..+.+.++++.+++...+|.|.+||........   .  .+... +.+ .|-+      .
T Consensus       113 ~~~~~~e~~~~~~~kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys-~fv~~~~~~~~  191 (670)
T PF10395_consen  113 DGTVNSETTNEFELKLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYS-KFVNDFELENG  191 (670)
T ss_pred             ccccCccccceEEEEcccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehh-hhhcccccccC
Confidence                 111122222234579999999999999999999999999993322111   1  11111 111 2222      2


Q ss_pred             CCEEEEEeC-C---CeEEEEEcCCCCccceEEeCcccCceEE-EeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecC
Q 042434          405 CKNFIVNLN-S---QEIHMWDVAGKWEKPFKYTGHSQNKYVI-RSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSG  479 (517)
Q Consensus       405 ~~~l~~~~~-d---~~i~~~d~~~~~~~~~~~~~~~~~~~~i-~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  479 (517)
                      ..++++.+. +   -..+++.+.........+.......... .+.+.-.+|.+..-  .+++|.+|++.+.+...++.-
T Consensus       192 ~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l  269 (670)
T PF10395_consen  192 KDLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISL  269 (670)
T ss_pred             CceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEe
Confidence            344444443 2   2567777732223333332111111001 11111124544333  677899999988876666542


Q ss_pred             C-----C-CCeeEE-EecCCCCcEEEEeeCCCcEEEeCCC
Q 042434          480 H-----S-MTVNCV-SWNPKRPKMLASASDDHTIRIWGPC  512 (517)
Q Consensus       480 h-----~-~~v~~v-~~~~~~~~~l~s~~~dg~v~iw~~~  512 (517)
                      .     . ..+.++ +.+|+  ++|.+  .++.|++.|+.
T Consensus       270 ~~ii~~~~~~~vSl~~~s~n--RvLLs--~~nkIyLld~~  305 (670)
T PF10395_consen  270 PSIIDKESDDLVSLKPPSPN--RVLLS--VNNKIYLLDLK  305 (670)
T ss_pred             chhhccccccceEeecCCCC--eEEEE--cCCEEEEEeeh
Confidence            2     1 123333 33443  34544  35678888764

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=94.58  E-value=4.7  Score=38.94  Aligned_cols=143  Identities=8%  Similarity=0.131  Sum_probs=85.4

Q ss_pred             CCCeEEEEeCCCeEEEEECCCCc-----EEEEeCCCCCceEEEEEeC-----CCCeEEEeeCCCceeEEEEeCC-CC---
Q 042434          278 DDTKLLTCGNAEVLKLWDVETGI-----CKHTFGDHGFIVSSCAWFP-----DSKRLVCGSSDTEKGIFMCDCD-GN---  343 (517)
Q Consensus       278 ~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~~v~~i~~~~-----~~~~l~~~~~d~~v~i~~~~~~-~~---  343 (517)
                      +...|++||..|.++||+...+.     .+-. ..-+.+|..+..-+     +...|++ =.-..+.||..... +.   
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE-~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~  113 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLE-TQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEH  113 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEE-EecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCccc
Confidence            34689999999999999985443     1111 13356777776542     2223433 33333334433221 11   


Q ss_pred             ----eeEeeeCcCC-CceEEEEEcc----C-CCEEEEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEe
Q 042434          344 ----EIKAWRGTRI-PKVLDLAVTP----D-GENLISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNL  412 (517)
Q Consensus       344 ----~~~~~~~~~~-~~i~~~~~~~----~-~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~  412 (517)
                          .+.....++. .....+++-|    . ...+.+-+.||.+.+|+-+... ......---...+.+.+....+++++
T Consensus       114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~s  193 (418)
T PF14727_consen  114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTAS  193 (418)
T ss_pred             CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEec
Confidence                1222222221 1334444443    2 3578888999999999988766 33333333445678888888999999


Q ss_pred             CCCeEEEEEc
Q 042434          413 NSQEIHMWDV  422 (517)
Q Consensus       413 ~d~~i~~~d~  422 (517)
                      .+..+..|..
T Consensus       194 ss~~l~~Yky  203 (418)
T PF14727_consen  194 SSWTLECYKY  203 (418)
T ss_pred             CceeEEEecH
Confidence            9988888875

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.53  E-value=2.2  Score=43.27  Aligned_cols=113  Identities=13%  Similarity=0.220  Sum_probs=70.1

Q ss_pred             CCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeC-CCCCceEEEEEe--CCCCeEEEeeCCCceeEEE---EeC-
Q 042434          268 NPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFG-DHGFIVSSCAWF--PDSKRLVCGSSDTEKGIFM---CDC-  340 (517)
Q Consensus       268 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~--~~~~~l~~~~~d~~v~i~~---~~~-  340 (517)
                      ....-+.-+.-++..++-+....+.|||...+.....-. ...+.|.++.|.  |+++.+++.+..+.|.++-   +|- 
T Consensus        30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~  109 (631)
T PF12234_consen   30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT  109 (631)
T ss_pred             CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence            344555555545444444445589999998887544322 457889999996  5888999999988844431   111 


Q ss_pred             -CC---CeeEe--eeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEEC
Q 042434          341 -DG---NEIKA--WRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL  382 (517)
Q Consensus       341 -~~---~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  382 (517)
                       .+   ..++.  +......+|.+..|.++|..++.+  ++.+.|+|-
T Consensus       110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk  155 (631)
T PF12234_consen  110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK  155 (631)
T ss_pred             cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence             11   11222  222333478899999999766544  456777764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.46  E-value=0.073  Score=54.12  Aligned_cols=167  Identities=12%  Similarity=0.155  Sum_probs=93.9

Q ss_pred             EeccccCcEEEEEECC-CCCEEEEeeCCCcEEEEEecCC-Ceee---EEEEeccCCCCEEEEEECC---CCCeEEEEeCC
Q 042434          217 ILTEHKNEVWFVQFSN-NGEYLASSSSDCSAIIWKVLED-SKLT---LKHTLRSHQNPVSFVAWSP---DDTKLLTCGNA  288 (517)
Q Consensus       217 ~l~~h~~~v~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~-~~~~---~~~~~~~h~~~v~~l~~s~---~~~~l~s~~~d  288 (517)
                      .++|..+.|-.+.|-. +-..++  -.-|...||+++-- +++.   .++....-...+.-+.|.|   +..++..+-.+
T Consensus       127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~  204 (1283)
T KOG1916|consen  127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG  204 (1283)
T ss_pred             HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence            4567778888888844 222222  23467889987421 1111   1222233345556667765   55667777778


Q ss_pred             CeEEEEECCCCcEEEEeCCCCCceEEEE-----------EeCCCCeEEEeeCCCceeEEEEeCCC----CeeEeeeCcCC
Q 042434          289 EVLKLWDVETGICKHTFGDHGFIVSSCA-----------WFPDSKRLVCGSSDTEKGIFMCDCDG----NEIKAWRGTRI  353 (517)
Q Consensus       289 g~i~iwd~~~~~~~~~~~~~~~~v~~i~-----------~~~~~~~l~~~~~d~~v~i~~~~~~~----~~~~~~~~~~~  353 (517)
                      +.+++.++.+... ..+.+|...++.++           .+|||+.|+.++.||.++.|..-+.+    .++..|..+..
T Consensus       205 ~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~  283 (1283)
T KOG1916|consen  205 GEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK  283 (1283)
T ss_pred             CceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC
Confidence            8888877654332 33445655544433           58999999999999997665544444    33455555553


Q ss_pred             CceEEEEEccCCC---------EEEEEe-CCCcEEEEECCCce
Q 042434          354 PKVLDLAVTPDGE---------NLISVL-SDKDIRILNLGTYA  386 (517)
Q Consensus       354 ~~i~~~~~~~~~~---------~l~~~~-~dg~i~i~d~~~~~  386 (517)
                      .+-.|.-++....         ++++++ .+..+++|.....+
T Consensus       284 ~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~  326 (1283)
T KOG1916|consen  284 HPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQ  326 (1283)
T ss_pred             CCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchh
Confidence            3333333333211         233333 34467777765544

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.33  E-value=0.94  Score=42.82  Aligned_cols=109  Identities=17%  Similarity=0.177  Sum_probs=68.6

Q ss_pred             ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCC
Q 042434          391 SEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRN  470 (517)
Q Consensus       391 ~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~  470 (517)
                      ...++|.++.|++|.+.+++--.+..|.+++.............+......|...+|+.+ .-+|..+..| +-+|-+..
T Consensus        64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~p  141 (657)
T KOG2377|consen   64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLP  141 (657)
T ss_pred             cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEch
Confidence            345699999999999999999999999999985442332222233333333444444443 4455555444 55555432


Q ss_pred             -CceeEEecCCCCCeeEEEecCCCCcEEEEee
Q 042434          471 -SKPIEILSGHSMTVNCVSWNPKRPKMLASAS  501 (517)
Q Consensus       471 -~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~  501 (517)
                       .+.++..+.|+..|+-..|+++..-.|.+.+
T Consensus       142 ekrslRlVks~~~nvnWy~yc~et~v~LL~t~  173 (657)
T KOG2377|consen  142 EKRSLRLVKSHNLNVNWYMYCPETAVILLSTT  173 (657)
T ss_pred             hhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence             2345555678888999999998743333333

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=94.23  E-value=4.9  Score=37.73  Aligned_cols=106  Identities=11%  Similarity=0.102  Sum_probs=52.1

Q ss_pred             CCCeEEEeeCCCc---eeEEEEeCCCCee----EeeeCcCCCceEEEEEccCCCEEEEEeC-----CCcEEEEECCCce-
Q 042434          320 DSKRLVCGSSDTE---KGIFMCDCDGNEI----KAWRGTRIPKVLDLAVTPDGENLISVLS-----DKDIRILNLGTYA-  386 (517)
Q Consensus       320 ~~~~l~~~~~d~~---v~i~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~-  386 (517)
                      ++..++.|+.++.   -.++.+|.....-    ..............+..-+++..+.|+.     ...+..||+.+.+ 
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W  151 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEW  151 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence            5566677776432   2367777654432    1111111111111122235566666664     2368889988766 


Q ss_pred             EEee--ccCCCeeEEEEcCCCCEEEEEeCCC----eEEEEEcCCC
Q 042434          387 ERVI--SEEHPITSLSVSVDCKNFIVNLNSQ----EIHMWDVAGK  425 (517)
Q Consensus       387 ~~~~--~~~~~i~~~~~s~~~~~l~~~~~d~----~i~~~d~~~~  425 (517)
                      ....  .........+...+++.++.|+.++    .+..||..+.
T Consensus       152 ~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~  196 (323)
T TIGR03548       152 FELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN  196 (323)
T ss_pred             eECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence            2221  1112222233344667777776653    3567887653

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PLN02153 epithiospecifier protein

Probab=94.08  E-value=5.5  Score=37.75  Aligned_cols=150  Identities=13%  Similarity=0.135  Sum_probs=72.1

Q ss_pred             CCCeEEEeeCCCc---eeEEEEeCCCCeeEeeeCc-----CCCceEEEEEccCCCEEEEEeCC-----------CcEEEE
Q 042434          320 DSKRLVCGSSDTE---KGIFMCDCDGNEIKAWRGT-----RIPKVLDLAVTPDGENLISVLSD-----------KDIRIL  380 (517)
Q Consensus       320 ~~~~l~~~~~d~~---v~i~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~d-----------g~i~i~  380 (517)
                      +++.++.|+.++.   -.++.+|.....-......     ........+..-+++..+.|+.+           ..+.+|
T Consensus        85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y  164 (341)
T PLN02153         85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY  164 (341)
T ss_pred             CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence            5667777776432   1378888876544332211     11112222223355666666643           247789


Q ss_pred             ECCCceEEeec-cC----CC-eeEEEEcCCCCEEEEEeC-------------CCeEEEEEcCCC-CccceEEeCcccCce
Q 042434          381 NLGTYAERVIS-EE----HP-ITSLSVSVDCKNFIVNLN-------------SQEIHMWDVAGK-WEKPFKYTGHSQNKY  440 (517)
Q Consensus       381 d~~~~~~~~~~-~~----~~-i~~~~~s~~~~~l~~~~~-------------d~~i~~~d~~~~-~~~~~~~~~~~~~~~  440 (517)
                      |..+..-.... ..    .. -.+++ .-+++.++.++.             ...+.+||+.+. |..+...........
T Consensus       165 d~~~~~W~~l~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~  243 (341)
T PLN02153        165 NIADGKWVQLPDPGENFEKRGGAGFA-VVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARS  243 (341)
T ss_pred             ECCCCeEeeCCCCCCCCCCCCcceEE-EECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcc
Confidence            98876622111 11    11 11222 235555555542             245888887653 222221100111111


Q ss_pred             EEEeecCCCCCcEEEEecCC--------------CcEEEEecCCCc
Q 042434          441 VIRSCFGGLDGTFIASGSEN--------------SQIYIWNRRNSK  472 (517)
Q Consensus       441 ~i~~~~~s~~~~~l~~~~~d--------------g~i~iwd~~~~~  472 (517)
                      ...++  ..++++++.|+..              ..++.+|..+.+
T Consensus       244 ~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~  287 (341)
T PLN02153        244 VFAHA--VVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLV  287 (341)
T ss_pred             eeeeE--EECCEEEEECcccCCccccccccccccccEEEEEcCccE
Confidence            11122  2356777777752              257888887654

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=94.00  E-value=4.4  Score=36.31  Aligned_cols=224  Identities=16%  Similarity=0.091  Sum_probs=119.0

Q ss_pred             CCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeC--CCC
Q 042434          232 NNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFG--DHG  309 (517)
Q Consensus       232 ~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~  309 (517)
                      -.|++...+.-|.-..+.|+.+.........+......-..++.|  |++-..+..|+-+.+-|+.+.....-+.  ...
T Consensus       136 vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g  213 (370)
T COG5276         136 VSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTG  213 (370)
T ss_pred             ecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecC
Confidence            356777777755567788998776666666666556666777776  7777888899999999997654222111  123


Q ss_pred             CceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeC-cCCCceEEE-EEccCCCEEEEEeCCCcEEEEECCCceE
Q 042434          310 FIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRG-TRIPKVLDL-AVTPDGENLISVLSDKDIRILNLGTYAE  387 (517)
Q Consensus       310 ~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~-~~~~~i~~~-~~~~~~~~l~~~~~dg~i~i~d~~~~~~  387 (517)
                      ..+.++..+++..+++.....    +.+.|..+..-....+ .....+.++ .+.-.+++......+.-+-+.|......
T Consensus       214 ~g~~sv~vsdnr~y~vvy~eg----vlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~s  289 (370)
T COG5276         214 PGTYSVSVSDNRAYLVVYDEG----VLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPS  289 (370)
T ss_pred             CceEEEEecCCeeEEEEcccc----eEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCC
Confidence            367777777665555554333    6777766543222111 111122222 2333466666777777777777765441


Q ss_pred             Eeec-----cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCc
Q 042434          388 RVIS-----EEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQ  462 (517)
Q Consensus       388 ~~~~-----~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~  462 (517)
                      .+..     .......+..  .+.++..+..+ ...+.|.... +..-..   .........+..+-+.+++.+...++.
T Consensus       290 pfl~ss~~t~g~~a~gi~a--y~~y~yiadkn-~g~vV~~s~~-s~m~~~---~g~~ti~~s~~v~~~~q~~y~~d~~~g  362 (370)
T COG5276         290 PFLSSSLDTAGYQAAGIRA--YGNYNYIADKN-TGAVVDASPP-SMMDKR---PGRPTIGQSCDVSVDTQIIYSTDYNGG  362 (370)
T ss_pred             CchhccccCCCccccceEE--ecCeeEeccCC-ceEEEeCCCh-hhcccc---cCcceEeeecceEEEeeEEEEeecCCC
Confidence            1111     1111222222  23333333333 3334443221 111011   111112333333445667778888888


Q ss_pred             EEEEec
Q 042434          463 IYIWNR  468 (517)
Q Consensus       463 i~iwd~  468 (517)
                      +.+|+.
T Consensus       363 l~i~~~  368 (370)
T COG5276         363 LSIIEY  368 (370)
T ss_pred             EEEEEe
Confidence            888875

>PLN02193 nitrile-specifier protein

Probab=93.99  E-value=7.3  Score=38.83  Aligned_cols=192  Identities=15%  Similarity=0.125  Sum_probs=93.4

Q ss_pred             CCCeEEEEeCC-------CeEEEEECCCCcEEEEeCCC---C--CceEEEEEeCCCCeEEEeeCCCc---eeEEEEeCCC
Q 042434          278 DDTKLLTCGNA-------EVLKLWDVETGICKHTFGDH---G--FIVSSCAWFPDSKRLVCGSSDTE---KGIFMCDCDG  342 (517)
Q Consensus       278 ~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~---~--~~v~~i~~~~~~~~l~~~~~d~~---v~i~~~~~~~  342 (517)
                      ++..++.|+.+       ..+.+||+.+.+-.. ....   .  .........-++..++.|+.++.   -.++.+|+..
T Consensus       175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~-~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t  253 (470)
T PLN02193        175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSI-SPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTT  253 (470)
T ss_pred             CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEe-CCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCC
Confidence            35566666643       247788887765432 2111   1  11111122235667777776532   2388889887


Q ss_pred             CeeEeeeCc---CCCceEEEEEccCCCEEEEEeCCC-----cEEEEECCCceEEeeccC-----CC-eeEEEEcCCCCEE
Q 042434          343 NEIKAWRGT---RIPKVLDLAVTPDGENLISVLSDK-----DIRILNLGTYAERVISEE-----HP-ITSLSVSVDCKNF  408 (517)
Q Consensus       343 ~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~-----~~-i~~~~~s~~~~~l  408 (517)
                      ..-......   ........+..-+++..+.|+.++     .+..||+.+.+-......     .. -..++ .-+++.+
T Consensus       254 ~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~-~~~gkiy  332 (470)
T PLN02193        254 NEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLE-VVQGKVW  332 (470)
T ss_pred             CEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEE-EECCcEE
Confidence            554433221   111111122223556666666543     467888877662211110     01 11122 2356677


Q ss_pred             EEEeCC----CeEEEEEcCCC-CccceEEeCcccCceEEEeecCCCCCcEEEEecCC--------------CcEEEEecC
Q 042434          409 IVNLNS----QEIHMWDVAGK-WEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSEN--------------SQIYIWNRR  469 (517)
Q Consensus       409 ~~~~~d----~~i~~~d~~~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d--------------g~i~iwd~~  469 (517)
                      +.++.+    ..+.+||+.+. |..+..............++  ..++++++.|+.+              ..+.+||..
T Consensus       333 viGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~  410 (470)
T PLN02193        333 VVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASA--AVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTE  410 (470)
T ss_pred             EEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEE--EECCEEEEECCccCCccccccCccceeccEEEEEcC
Confidence            776654    46889998654 22221110011111111122  2367778888753              248889988


Q ss_pred             CCce
Q 042434          470 NSKP  473 (517)
Q Consensus       470 ~~~~  473 (517)
                      +.+-
T Consensus       411 t~~W  414 (470)
T PLN02193        411 TLQW  414 (470)
T ss_pred             cCEE
Confidence            7653

>PRK13684 Ycf48-like protein; Provisional

Probab=93.95  E-value=5.7  Score=37.46  Aligned_cols=105  Identities=11%  Similarity=0.131  Sum_probs=61.4

Q ss_pred             CCceEEEEEeCCCCeEEEeeCCCceeEEEE-eCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceE
Q 042434          309 GFIVSSCAWFPDSKRLVCGSSDTEKGIFMC-DCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAE  387 (517)
Q Consensus       309 ~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  387 (517)
                      ...+.++.+.|++.+++++ ..|.  ++.- +..+..-..........+.++.+.++++.++++ ..|.+++=....+..
T Consensus       172 ~g~~~~i~~~~~g~~v~~g-~~G~--i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s  247 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVS-SRGN--FYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES  247 (334)
T ss_pred             cceEEEEEECCCCeEEEEe-CCce--EEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence            5578889999987665554 4454  4432 333333444444444578999999998876665 557665323333331


Q ss_pred             ---Eeec---cCCCeeEEEEcCCCCEEEEEeCCCeEE
Q 042434          388 ---RVIS---EEHPITSLSVSVDCKNFIVNLNSQEIH  418 (517)
Q Consensus       388 ---~~~~---~~~~i~~~~~s~~~~~l~~~~~d~~i~  418 (517)
                         ....   ....+..+.+.+++..+++ +.+|.+.
T Consensus       248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~  283 (334)
T PRK13684        248 WSKPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLL  283 (334)
T ss_pred             cccccCCccccccceeeEEEcCCCCEEEE-cCCCeEE
Confidence               1111   2234678889987765554 4566544

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=93.94  E-value=6.3  Score=37.94  Aligned_cols=55  Identities=15%  Similarity=0.106  Sum_probs=27.6

Q ss_pred             CCCeEEEeeCCC---------ceeEEEEeCCCCeeEeeeCc-CCCce-EEEEEccCCCEEEEEeCC
Q 042434          320 DSKRLVCGSSDT---------EKGIFMCDCDGNEIKAWRGT-RIPKV-LDLAVTPDGENLISVLSD  374 (517)
Q Consensus       320 ~~~~l~~~~~d~---------~v~i~~~~~~~~~~~~~~~~-~~~~i-~~~~~~~~~~~l~~~~~d  374 (517)
                      ++..++.|+...         .-.++.||...+.-...... ..... .+.....+++..+.|+.+
T Consensus        84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~  149 (376)
T PRK14131         84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN  149 (376)
T ss_pred             CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence            566777776542         12378888876554443321 11111 112221467777777654

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=93.87  E-value=0.37  Score=29.03  Aligned_cols=32  Identities=16%  Similarity=0.239  Sum_probs=26.4

Q ss_pred             CCEEEEEECCCC---CeEEEEeCCCeEEEEECCCC
Q 042434          268 NPVSFVAWSPDD---TKLLTCGNAEVLKLWDVETG  299 (517)
Q Consensus       268 ~~v~~l~~s~~~---~~l~s~~~dg~i~iwd~~~~  299 (517)
                      ++|.++.|+|++   .+|+.+-..|.|.|+|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            468999999854   48888888899999999853

It contains a characteristic DLL sequence motif.

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=93.82  E-value=4.5  Score=35.80  Aligned_cols=140  Identities=18%  Similarity=0.170  Sum_probs=73.8

Q ss_pred             EEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCC---CcEEEEECCC----ce----EEeeccCCCeeEEEEcCC
Q 042434          336 FMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSD---KDIRILNLGT----YA----ERVISEEHPITSLSVSVD  404 (517)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~----~~----~~~~~~~~~i~~~~~s~~  404 (517)
                      ..||..++..+.........+.+-.+.+||+.+.+|+..   ..+++++...    ..    .........-.+...-||
T Consensus        49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~D  128 (243)
T PF07250_consen   49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPD  128 (243)
T ss_pred             EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCC
Confidence            344544444443333322223333455666666666542   2466666543    11    011334445566777889


Q ss_pred             CCEEEEEeCCC-eEEEEEcCCCCccceEE--eC-----cccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEE
Q 042434          405 CKNFIVNLNSQ-EIHMWDVAGKWEKPFKY--TG-----HSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEI  476 (517)
Q Consensus       405 ~~~l~~~~~d~-~i~~~d~~~~~~~~~~~--~~-----~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~  476 (517)
                      |+.+++|+... ...+|.-.........+  ..     ....-+.  .++.-|+|++++.+..++  .|||..+.+.+..
T Consensus       129 G~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP--~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~  204 (243)
T PF07250_consen  129 GRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYP--FVHLLPDGNLFIFANRGS--IIYDYKTNTVVRT  204 (243)
T ss_pred             CCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCc--eEEEcCCCCEEEEEcCCc--EEEeCCCCeEEee
Confidence            99999988764 34455442211111111  11     1111222  233468999999888754  4678888877777


Q ss_pred             ecC
Q 042434          477 LSG  479 (517)
Q Consensus       477 ~~~  479 (517)
                      +..
T Consensus       205 lP~  207 (243)
T PF07250_consen  205 LPD  207 (243)
T ss_pred             CCC
Confidence            664

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.79  E-value=0.69  Score=44.48  Aligned_cols=75  Identities=17%  Similarity=0.244  Sum_probs=50.1

Q ss_pred             EEeecCCCCCcEEEEecCCCcEEEEe---------cCCCceeEEec-----------CCCCCeeEEEecCCC--CcEEEE
Q 042434          442 IRSCFGGLDGTFIASGSENSQIYIWN---------RRNSKPIEILS-----------GHSMTVNCVSWNPKR--PKMLAS  499 (517)
Q Consensus       442 i~~~~~s~~~~~l~~~~~dg~i~iwd---------~~~~~~~~~~~-----------~h~~~v~~v~~~~~~--~~~l~s  499 (517)
                      +.-+..++.|..++-.+.+|.+.++=         ++.|+.+-...           ...-.+..++|+|+.  ...|..
T Consensus       106 V~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~i  185 (741)
T KOG4460|consen  106 VYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVL  185 (741)
T ss_pred             EEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEE
Confidence            44444588999999999998654432         22343221111           122356788999986  457788


Q ss_pred             eeCCCcEEEeCCCCCCC
Q 042434          500 ASDDHTIRIWGPCQSSE  516 (517)
Q Consensus       500 ~~~dg~v~iw~~~~~~~  516 (517)
                      -+.|.+||+|+.....+
T Consensus       186 L~sdnviRiy~lS~~te  202 (741)
T KOG4460|consen  186 LTSDNVIRIYSLSEPTE  202 (741)
T ss_pred             EecCcEEEEEecCCcch
Confidence            88999999999987665

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=93.73  E-value=0.025  Score=53.37  Aligned_cols=135  Identities=16%  Similarity=0.197  Sum_probs=93.2

Q ss_pred             EEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEE-eeCCCceeEEEEeCCCCeeEeee
Q 042434          271 SFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVC-GSSDTEKGIFMCDCDGNEIKAWR  349 (517)
Q Consensus       271 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~~~d~~v~i~~~~~~~~~~~~~~  349 (517)
                      ....|-|.+.-++.++.+..+..||- .|+..-.. ..+.....++|..++..++. +-..+.  +++|+..........
T Consensus        38 i~~~w~~e~~nlavaca~tiv~~YD~-agq~~le~-n~tg~aldm~wDkegdvlavlAek~~p--iylwd~n~eytqqLE  113 (615)
T KOG2247|consen   38 IIHRWRPEGHNLAVACANTIVIYYDK-AGQVILEL-NPTGKALDMAWDKEGDVLAVLAEKTGP--IYLWDVNSEYTQQLE  113 (615)
T ss_pred             ceeeEecCCCceehhhhhhHHHhhhh-hcceeccc-CCchhHhhhhhccccchhhhhhhcCCC--eeechhhhhhHHHHh
Confidence            44567787777888888889999984 34433333 33455567888887776554 444556  889998765444443


Q ss_pred             CcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEeec-cCCCeeEEEEcCCCCEEE
Q 042434          350 GTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVIS-EEHPITSLSVSVDCKNFI  409 (517)
Q Consensus       350 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~-~~~~i~~~~~s~~~~~l~  409 (517)
                      ......-.-+.|++.+..++.+...|.+.+++..+.+ ....+ +...++++++.+.+..+.
T Consensus       114 ~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil  175 (615)
T KOG2247|consen  114 SGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVIL  175 (615)
T ss_pred             ccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeee
Confidence            3322222337889999999999999999999988766 44444 777899999999865443

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.72  E-value=1.9  Score=43.65  Aligned_cols=169  Identities=12%  Similarity=0.118  Sum_probs=83.6

Q ss_pred             CcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEE-EEeccCCCCEEEEEECCCCCeEEEEeCCC
Q 042434          211 PTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLK-HTLRSHQNPVSFVAWSPDDTKLLTCGNAE  289 (517)
Q Consensus       211 ~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~-~~~~~h~~~v~~l~~s~~~~~l~s~~~dg  289 (517)
                      .+..+..+.-..+.+-.+.|+.+..+| ....+|+++||++... ..+.. .-+......|..+.|..+|-.+.  ..+|
T Consensus        72 sG~lL~~~~w~~~~lI~mgWs~~eeLI-~v~k~g~v~Vy~~~ge-~ie~~svg~e~~~~~I~ec~~f~~GVavl--t~~g  147 (829)
T KOG2280|consen   72 SGQLLGRILWKHGELIGMGWSDDEELI-CVQKDGTVHVYGLLGE-FIESNSVGFESQMSDIVECRFFHNGVAVL--TVSG  147 (829)
T ss_pred             cccchHHHHhcCCCeeeecccCCceEE-EEeccceEEEeecchh-hhcccccccccccCceeEEEEecCceEEE--ecCC
Confidence            344555444444588899999887644 4578999999998522 11110 00122233455555555553333  3444


Q ss_pred             eEEEE-ECCCCcEEEEeCC-C--CCceEEEEEeCCCC---eEEEee-CCCceeEEEEeCCCCeeEeeeCcCCCceEEEEE
Q 042434          290 VLKLW-DVETGICKHTFGD-H--GFIVSSCAWFPDSK---RLVCGS-SDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAV  361 (517)
Q Consensus       290 ~i~iw-d~~~~~~~~~~~~-~--~~~v~~i~~~~~~~---~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~  361 (517)
                      .+.+- +.+.. ..+++.. .  ..+-.|-...+++.   .++-.. ..+. .++..+........+...+ +.+..+.+
T Consensus       148 ~v~~i~~~~~~-~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~-~~~q~~~~~~q~~~~~~~~-~~~~ki~V  224 (829)
T KOG2280|consen  148 QVILINGVEEP-KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGL-HICQVEESRVQLHALSWPN-SSVVKISV  224 (829)
T ss_pred             cEEEEcCCCcc-hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhh-cccceecccccccccCCCC-ceEEEEEE
Confidence            44433 32221 2222221 1  11112222222211   111111 1110 0222222222222222222 36888999


Q ss_pred             ccCCCEEEEEeCCCcEEEEECCCce
Q 042434          362 TPDGENLISVLSDKDIRILNLGTYA  386 (517)
Q Consensus       362 ~~~~~~l~~~~~dg~i~i~d~~~~~  386 (517)
                      ||+.++++.-...|.|.+.+.+..+
T Consensus       225 S~n~~~laLyt~~G~i~~vs~D~~~  249 (829)
T KOG2280|consen  225 SPNRRFLALYTETGKIWVVSIDLSQ  249 (829)
T ss_pred             cCCcceEEEEecCCcEEEEecchhh
Confidence            9999999999999999988876554

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.61  E-value=2  Score=41.55  Aligned_cols=95  Identities=20%  Similarity=0.134  Sum_probs=58.9

Q ss_pred             CCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEe
Q 042434          268 NPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKA  347 (517)
Q Consensus       268 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~  347 (517)
                      -.|..+..++.|..++-.|.+|.+..+=.+..-.-..++..+..|+|=.+.-+ ..|++.+..                 
T Consensus       104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~-~~~ftss~~-----------------  165 (741)
T KOG4460|consen  104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVA-ERFFTSSTS-----------------  165 (741)
T ss_pred             EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeeccc-ceeeccCCc-----------------
Confidence            35777888999999999999986655432222222233344444555444433 233333211                 


Q ss_pred             eeCcCCCceEEEEEccCC---CEEEEEeCCCcEEEEECCCce
Q 042434          348 WRGTRIPKVLDLAVTPDG---ENLISVLSDKDIRILNLGTYA  386 (517)
Q Consensus       348 ~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~  386 (517)
                            -.+...+|+|+.   ..+..-+.|..|++||+....
T Consensus       166 ------ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~t  201 (741)
T KOG4460|consen  166 ------LTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPT  201 (741)
T ss_pred             ------eeeeeccccCCccCCceEEEEecCcEEEEEecCCcc
Confidence                  145667888875   578888899999999987765

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=93.41  E-value=7.8  Score=37.35  Aligned_cols=149  Identities=10%  Similarity=0.053  Sum_probs=81.0

Q ss_pred             eEEEEEccCCCEEEEEeCCCcEEEEECCCc--eEEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEe
Q 042434          356 VLDLAVTPDGENLISVLSDKDIRILNLGTY--AERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYT  433 (517)
Q Consensus       356 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~  433 (517)
                      ...+..++++..++++.....++-||-...  +.........++.+.+.+++..++++ ..|.+..-+-.........+.
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~S~d~G~~~~~~~f~  319 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYVSKGTGLTEEDFDFE  319 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEEecCCCCccccccee
Confidence            344566778877777655544455655432  33445556678899999998877766 455544332222101000111


Q ss_pred             --CcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEec---CCCCCeeEEEecCCCCcEEEEeeCCCcEEE
Q 042434          434 --GHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILS---GHSMTVNCVSWNPKRPKMLASASDDHTIRI  508 (517)
Q Consensus       434 --~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~v~~~~~~~~~l~s~~~dg~v~i  508 (517)
                        ........+..+.+.+++..+++ +.+|.+.... ..|+.-....   .-....+.+.|.+++ + ....+.+|.|.-
T Consensus       320 ~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~-~-g~~~G~~G~il~  395 (398)
T PLN00033        320 EADIKSRGFGILDVGYRSKKEAWAA-GGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDK-K-GFVLGNDGVLLR  395 (398)
T ss_pred             ecccCCCCcceEEEEEcCCCcEEEE-ECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCC-c-eEEEeCCcEEEE
Confidence              11111222444444566665554 4577666653 4444333322   224578899997766 3 555677887765


Q ss_pred             e
Q 042434          509 W  509 (517)
Q Consensus       509 w  509 (517)
                      |
T Consensus       396 ~  396 (398)
T PLN00033        396 Y  396 (398)
T ss_pred             e
Confidence            5

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=93.40  E-value=0.33  Score=29.21  Aligned_cols=31  Identities=23%  Similarity=0.239  Sum_probs=26.0

Q ss_pred             CcEEEEEECCC-C--CEEEEeeCCCcEEEEEecC
Q 042434          223 NEVWFVQFSNN-G--EYLASSSSDCSAIIWKVLE  253 (517)
Q Consensus       223 ~~v~~~~~s~~-~--~~l~t~~~dg~i~iw~~~~  253 (517)
                      ++|.++.|||+ +  .+|+.+-.-|.|.|+|+.+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            57899999984 4  5888888889999999963

It contains a characteristic DLL sequence motif.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.35  E-value=0.41  Score=41.77  Aligned_cols=64  Identities=14%  Similarity=0.295  Sum_probs=48.7

Q ss_pred             CCCCcEEEEecCCCcEEEEecCCCceeEEe-------c-------CCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434          448 GLDGTFIASGSENSQIYIWNRRNSKPIEIL-------S-------GHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ  513 (517)
Q Consensus       448 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------~-------~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~  513 (517)
                      ..++.++++-+.+|.+++||+.+++.+..-       .       .....|..+..+.+| .-+++-+ +|..+.|+.+-
T Consensus        19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G-~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNG-VPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCC-CEEEEEe-CCCEEEecccc
Confidence            457889999999999999999988754432       1       245678999999888 5666665 47788888753

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=93.31  E-value=7.4  Score=41.23  Aligned_cols=136  Identities=15%  Similarity=0.193  Sum_probs=88.4

Q ss_pred             CCcEEEEEecCC-CeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeC--CCCCceEEEEEeC
Q 042434          243 DCSAIIWKVLED-SKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFG--DHGFIVSSCAWFP  319 (517)
Q Consensus       243 dg~i~iw~~~~~-~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~i~~~~  319 (517)
                      +|.++.|++... .+++..+. ..-.++|.+  ..|-..++++| ....+++||+...+.++...  .....|+.+.+. 
T Consensus       911 ~g~~ytyk~~~~g~~lellh~-T~~~~~v~A--i~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~-  985 (1205)
T KOG1898|consen  911 SGFVYTYKFVRNGDKLELLHK-TEIPGPVGA--ICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY-  985 (1205)
T ss_pred             CCceEEEEEEecCceeeeeec-cCCCccceE--EeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEeec-
Confidence            455777776433 33333322 122344544  45655566654 45589999998877665443  235677888775 


Q ss_pred             CCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCC
Q 042434          320 DSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGT  384 (517)
Q Consensus       320 ~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  384 (517)
                       +..+++|.....+..+.|+..++++..+......+-......-|...++.+..-|.+.+..+..
T Consensus       986 -~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD~~pR~Vt~~~~lD~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen  986 -GARIVVGDIQESVHFVRYRREDNQLIVFADDPVPRHVTALELLDYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred             -ceEEEEeeccceEEEEEEecCCCeEEEEeCCCccceeeEEEEecCCceeeccccCcEEEEECCC
Confidence             6789999988888899999999998888766544333333344556778888888877776644

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=93.20  E-value=5.9  Score=35.31  Aligned_cols=182  Identities=13%  Similarity=0.073  Sum_probs=103.4

Q ss_pred             CcEEEEEECCCCCEEEEeeCCC--cEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc
Q 042434          223 NEVWFVQFSNNGEYLASSSSDC--SAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI  300 (517)
Q Consensus       223 ~~v~~~~~s~~~~~l~t~~~dg--~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~  300 (517)
                      .-...+.|..+|.++-+.+.-|  .|+.+|+.+++.... ..+.. .----.++.. +++...-.-.++...+||..+.+
T Consensus        45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~-~~l~~-~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~  121 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQS-VPLPP-RYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLK  121 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEE-EE-TT-T--EEEEEEE-TTEEEEEESSSSEEEEEETTTTE
T ss_pred             ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEE-EECCc-cccceeEEEE-CCEEEEEEecCCeEEEEccccce
Confidence            3455677878888888877766  688888877653322 22221 1111223333 23333444568899999999999


Q ss_pred             EEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCe-eEeee----CcCCCceEEEEEccCCCEEEEEeCCC
Q 042434          301 CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNE-IKAWR----GTRIPKVLDLAVTPDGENLISVLSDK  375 (517)
Q Consensus       301 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~-~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~dg  375 (517)
                      .+.++.-. ..=+.++  .|++.|+.+.....  ++.+|+.+-. ...+.    +.....++.+.+- +|...+=.-...
T Consensus       122 ~~~~~~y~-~EGWGLt--~dg~~Li~SDGS~~--L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td  195 (264)
T PF05096_consen  122 KIGTFPYP-GEGWGLT--SDGKRLIMSDGSSR--LYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTD  195 (264)
T ss_dssp             EEEEEE-S-SS--EEE--ECSSCEEEE-SSSE--EEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSS
T ss_pred             EEEEEecC-CcceEEE--cCCCEEEEECCccc--eEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCC
Confidence            99888543 3446666  45666666544444  9999987532 22222    1222345566665 565555555667


Q ss_pred             cEEEEECCCceEEe-e----------------ccCCCeeEEEEcCCCCEEEEEeC
Q 042434          376 DIRILNLGTYAERV-I----------------SEEHPITSLSVSVDCKNFIVNLN  413 (517)
Q Consensus       376 ~i~i~d~~~~~~~~-~----------------~~~~~i~~~~~s~~~~~l~~~~~  413 (517)
                      .|...|..++.... .                ....-.+.+++.|..+.+++.+.
T Consensus       196 ~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  196 RIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             EEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             eEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence            78888888876211 1                01345789999998777776654

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=93.16  E-value=6  Score=40.51  Aligned_cols=98  Identities=13%  Similarity=0.136  Sum_probs=47.6

Q ss_pred             eEEEEcCCCCEEEEEeCCC-----eEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCC
Q 042434          397 TSLSVSVDCKNFIVNLNSQ-----EIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS  471 (517)
Q Consensus       397 ~~~~~s~~~~~l~~~~~d~-----~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  471 (517)
                      ..++|-|+|..+++-..||     .+.++.-++.  ..-.+.-......-....+|......++ ....+.|.+|-..+-
T Consensus       250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGL--rHGef~lr~~~dEk~~~~~wn~~s~vla-v~~~n~~~lwttkNy  326 (1243)
T COG5290         250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERNGL--RHGEFDLRVGCDEKAFLENWNLLSTVLA-VAEGNLLKLWTTKNY  326 (1243)
T ss_pred             hccccccCCceeeeeccCCCCCcceEEEEccCCc--ccCCccccCCchhhhhhhhhhHHHHHHH-HhhcceEEEEEccce
Confidence            4588999999999877655     3555554332  1001100000000011122222222233 334567999987665


Q ss_pred             ceeEEecCCCCCeeEEEecCCCCcEE
Q 042434          472 KPIEILSGHSMTVNCVSWNPKRPKML  497 (517)
Q Consensus       472 ~~~~~~~~h~~~v~~v~~~~~~~~~l  497 (517)
                      ..-....-.-..+.-+.|+|...+.+
T Consensus       327 hWYLK~e~~ip~~s~vkwhpe~~nTl  352 (1243)
T COG5290         327 HWYLKVERQIPGISYVKWHPEEKNTL  352 (1243)
T ss_pred             EEEEEEeecCCCcceeeeccccCcEE
Confidence            43322222334566678888654333

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=93.15  E-value=0.12  Score=52.67  Aligned_cols=84  Identities=18%  Similarity=0.257  Sum_probs=57.4

Q ss_pred             cCcEEEEEEC---CCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEE-----------ECCCCCeEEEEeC
Q 042434          222 KNEVWFVQFS---NNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVA-----------WSPDDTKLLTCGN  287 (517)
Q Consensus       222 ~~~v~~~~~s---~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~-----------~s~~~~~l~s~~~  287 (517)
                      ...+.-+.|.   ++.-++..+-.++.|++.++.....    ..+.+|...+..++           .||||+.++.++.
T Consensus       180 gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~----~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~  255 (1283)
T KOG1916|consen  180 GSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR----SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAIS  255 (1283)
T ss_pred             CCCcceeeecccccccceeeeccCCCceeEeeechHHH----HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeec
Confidence            3344444444   4777888888899999887753322    34555776666554           5899999999999


Q ss_pred             CCeEEEEECC-----CCcEEEEeCCCC
Q 042434          288 AEVLKLWDVE-----TGICKHTFGDHG  309 (517)
Q Consensus       288 dg~i~iwd~~-----~~~~~~~~~~~~  309 (517)
                      ||.++.|.+.     .-.|.+..+.|+
T Consensus       256 dG~v~f~Qiyi~g~~~~rclhewkphd  282 (1283)
T KOG1916|consen  256 DGSVGFYQIYITGKIVHRCLHEWKPHD  282 (1283)
T ss_pred             CCccceeeeeeeccccHhhhhccCCCC
Confidence            9988888653     234556666775

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=92.70  E-value=12  Score=37.67  Aligned_cols=247  Identities=11%  Similarity=0.120  Sum_probs=108.0

Q ss_pred             CCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccC-CCCEEEEEECCCC-CeEEEEeCCC--eEEEEECCCCcEEEEeC
Q 042434          231 SNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSH-QNPVSFVAWSPDD-TKLLTCGNAE--VLKLWDVETGICKHTFG  306 (517)
Q Consensus       231 s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h-~~~v~~l~~s~~~-~~l~s~~~dg--~i~iwd~~~~~~~~~~~  306 (517)
                      ..++..++.+..+|.+....+..... .......+. ....+++.+..+| .+++.||.-|  .+.-|....-+.+..+ 
T Consensus       219 ~~~~~~~lL~~e~G~l~~l~l~~~~~-~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~-  296 (504)
T PF10433_consen  219 DKDGDRILLQDEDGDLYLLTLDNDGG-SISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSL-  296 (504)
T ss_dssp             STTSSEEEEEETTSEEEEEEEEEEEE-EEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE-
T ss_pred             cCCCCEEEEEeCCCeEEEEEEEECCC-eEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEec-
Confidence            45677888899999998887764432 111122222 4455666666554 4777777654  4555553333445555 


Q ss_pred             CCCCceEEEEEeCC----CC------eEEEee---CCCceeEEEEeCCCC--eeEeeeCcCCCceEEEEEcc-CCCEEEE
Q 042434          307 DHGFIVSSCAWFPD----SK------RLVCGS---SDTEKGIFMCDCDGN--EIKAWRGTRIPKVLDLAVTP-DGENLIS  370 (517)
Q Consensus       307 ~~~~~v~~i~~~~~----~~------~l~~~~---~d~~v~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~-~~~~l~~  370 (517)
                      ..-++|..++..+.    ..      .+++++   .+|.+++......-.  ............+..+.... ++.+++.
T Consensus       297 ~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~  376 (504)
T PF10433_consen  297 PNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVL  376 (504)
T ss_dssp             ----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEE
T ss_pred             cCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEE
Confidence            44567888887532    11      455543   355644443322222  11111111111222232222 1446666


Q ss_pred             EeCCCcEEEEECC---CceEE-eeccCCCeeEEEEcCCCCEEEEEeC---------CCeEEEEEcCCCCccceEEeCccc
Q 042434          371 VLSDKDIRILNLG---TYAER-VISEEHPITSLSVSVDCKNFIVNLN---------SQEIHMWDVAGKWEKPFKYTGHSQ  437 (517)
Q Consensus       371 ~~~dg~i~i~d~~---~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~---------d~~i~~~d~~~~~~~~~~~~~~~~  437 (517)
                      +..+. -+++.+.   ..... ....     . .|..+...++++..         ...|++.+.... ......... .
T Consensus       377 S~~~~-T~vl~~~~~d~~e~~~e~~~-----~-~f~~~~~Tl~~~~~~~~~ivQVt~~~i~l~~~~~~-~~~~~w~~~-~  447 (504)
T PF10433_consen  377 SFPNE-TRVLQISEGDDGEEVEEVEE-----D-GFDTDEPTLAAGNVGDGRIVQVTPKGIRLIDLEDG-KLTQEWKPP-A  447 (504)
T ss_dssp             EESSE-EEEEEES----SSEEEEE---------TS-SSS-EEEEEEETTTEEEEEESSEEEEEESSST-SEEEEEE-T-T
T ss_pred             EcCCc-eEEEEEecccCCcchhhhhh-----c-cCCCCCCCeEEEEcCCCeEEEEecCeEEEEECCCC-eEEEEEeCC-C
Confidence            55443 3344443   11110 0000     0 12222333333322         334777776443 222222111 1


Q ss_pred             CceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEec-C----CCCCeeEEEecC
Q 042434          438 NKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILS-G----HSMTVNCVSWNP  491 (517)
Q Consensus       438 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~----h~~~v~~v~~~~  491 (517)
                      ... |..+  +-++.+++.+..++.+..+.+.......... .    ....|.|+...|
T Consensus       448 ~~~-I~~a--~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p  503 (504)
T PF10433_consen  448 GSI-IVAA--SINDPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP  503 (504)
T ss_dssp             S----SEE--EESSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred             CCe-EEEE--EECCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence            111 2222  2345567777778889999887766543322 1    457788887766

...

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=92.69  E-value=8.8  Score=36.00  Aligned_cols=108  Identities=13%  Similarity=0.114  Sum_probs=55.7

Q ss_pred             CCCeEEEEeCCC-----eEEEEECCCCcE---EEEeCCCCCce--EEEEEeCCCCeEEEeeCCC---ceeEEEEeCCCCe
Q 042434          278 DDTKLLTCGNAE-----VLKLWDVETGIC---KHTFGDHGFIV--SSCAWFPDSKRLVCGSSDT---EKGIFMCDCDGNE  344 (517)
Q Consensus       278 ~~~~l~s~~~dg-----~i~iwd~~~~~~---~~~~~~~~~~v--~~i~~~~~~~~l~~~~~d~---~v~i~~~~~~~~~  344 (517)
                      ++..++.|+.++     .+..+|+.+.+.   ...+.....+.  .+++. -+++..+.|+..+   .-.++.+|+....
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~  150 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE  150 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence            456667777543     566777766653   12222111111  12222 2566777776421   1238888887654


Q ss_pred             eEeeeCcC-CCceEEEEEccCCCEEEEEeCCC----cEEEEECCCce
Q 042434          345 IKAWRGTR-IPKVLDLAVTPDGENLISVLSDK----DIRILNLGTYA  386 (517)
Q Consensus       345 ~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~  386 (517)
                      -....... .......+...+++..+.|+.++    .+.+||..+.+
T Consensus       151 W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~  197 (323)
T TIGR03548       151 WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ  197 (323)
T ss_pred             eeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence            43332111 11222233344667777777654    35688988776

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF09398 FOP_dimer: FOP N terminal dimerisation domain; InterPro: IPR018993 Fibroblast growth factor receptor 1 (FGFR1) oncogene partner (FOP) is a centrosomal protein that is involved in anchoring microtubules to centrosomes

Probab=92.63  E-value=0.21  Score=35.07  Aligned_cols=31  Identities=16%  Similarity=0.127  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHhhcChHHHHHHHhhhcCeeec
Q 042434           18 EFVRVVVQCLYSLGYQKSASCLESESGVSYK   48 (517)
Q Consensus        18 ~~~~li~q~L~~~g~~~s~~~l~~Esg~~~~   48 (517)
                      -++.||..||.-+||+-|+.+|+.|+|.+-.
T Consensus        20 Li~eLIrEyLef~~l~~TlsVf~~Es~~~~~   50 (81)
T PF09398_consen   20 LINELIREYLEFNNLDYTLSVFQPESGQPEE   50 (81)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHT-TT-
T ss_pred             HHHHHHHHHHHHcCCccHHHHHhhccCCCCC
Confidence            3678999999999999999999999998643

This domain includes a Lis-homology motif. It forms an alpha-helical bundle and is involved in dimerisation []. ; GO: 0034453 microtubule anchoring, 0005813 centrosome; PDB: 2D68_A.

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.55  E-value=16  Score=38.72  Aligned_cols=71  Identities=10%  Similarity=0.077  Sum_probs=43.1

Q ss_pred             ECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEE------e--ccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcE
Q 042434          230 FSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHT------L--RSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGIC  301 (517)
Q Consensus       230 ~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~------~--~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~  301 (517)
                      +..-|+.|..|+.||.+.+|.+...........      +  ..+..+|..+...+.-..+++ -.|+.+.++++.+-+.
T Consensus        22 va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~-l~dsqi~~~~l~~~~~  100 (877)
T KOG2063|consen   22 VAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLI-LSDSQIAVHKLPELEP  100 (877)
T ss_pred             HHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchhe-ecCCcceeeecCcccc
Confidence            345678899999999999999865422111111      0  112456666666655545444 3466788887766554

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=92.36  E-value=10  Score=35.97  Aligned_cols=55  Identities=15%  Similarity=0.131  Sum_probs=27.8

Q ss_pred             CCCeEEEeeCCC---------ceeEEEEeCCCCeeEeeeCcCCCceEE-EEE-ccCCCEEEEEeCC
Q 042434          320 DSKRLVCGSSDT---------EKGIFMCDCDGNEIKAWRGTRIPKVLD-LAV-TPDGENLISVLSD  374 (517)
Q Consensus       320 ~~~~l~~~~~d~---------~v~i~~~~~~~~~~~~~~~~~~~~i~~-~~~-~~~~~~l~~~~~d  374 (517)
                      +++..+.|+.+.         .-.++.||.....-............. ... .-+++..+.|+.+
T Consensus        63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~  128 (346)
T TIGR03547        63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN  128 (346)
T ss_pred             CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence            567777777532         123788888765544332111001111 112 3467777777654

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=91.79  E-value=8  Score=33.48  Aligned_cols=213  Identities=12%  Similarity=0.146  Sum_probs=105.4

Q ss_pred             CEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCC---CeEEEEeCCCeEEEEECC--CCcEEEEe---C
Q 042434          235 EYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDD---TKLLTCGNAEVLKLWDVE--TGICKHTF---G  306 (517)
Q Consensus       235 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~---~~l~s~~~dg~i~iwd~~--~~~~~~~~---~  306 (517)
                      .++..-=..|.|.-||.....-.  ..++.+.  ++.++.+--.+   .+.+.++..-.|.-||..  .-...+++   +
T Consensus        28 sLl~VDi~ag~v~r~D~~qn~v~--ra~ie~p--~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~  103 (310)
T KOG4499|consen   28 SLLYVDIEAGEVHRYDIEQNKVY--RAKIEGP--PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQ  103 (310)
T ss_pred             eEEEEEeccCceehhhhhhhheE--EEEEecC--cceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccC
Confidence            34444344566767888643221  2222221  13333332222   233334444345557732  22233331   1


Q ss_pred             --CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCC--------CceEEEEEccCCCEEEEE-eCCC
Q 042434          307 --DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRI--------PKVLDLAVTPDGENLISV-LSDK  375 (517)
Q Consensus       307 --~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~--------~~i~~~~~~~~~~~l~~~-~~dg  375 (517)
                        ........-..+|+|++++-.-.|-.   ..+...+..+..+...|.        +--+.++|+.+.+.+... +.+-
T Consensus       104 ~d~kknR~NDgkvdP~Gryy~GtMad~~---~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~  180 (310)
T KOG4499|consen  104 PDRKKNRLNDGKVDPDGRYYGGTMADFG---DDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNY  180 (310)
T ss_pred             chHHhcccccCccCCCCceeeeeecccc---ccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCce
Confidence              11344555667899998443222211   122222333333332221        123567888887766544 4566


Q ss_pred             cEEEEE--CCCce----EEee-------ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEE
Q 042434          376 DIRILN--LGTYA----ERVI-------SEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVI  442 (517)
Q Consensus       376 ~i~i~d--~~~~~----~~~~-------~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i  442 (517)
                      .|.-||  ..++.    ...+       ........+++..+|...+++-..++|...|..++ +....+.-....  ..
T Consensus       181 ~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tG-K~L~eiklPt~q--it  257 (310)
T KOG4499|consen  181 EVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTG-KILLEIKLPTPQ--IT  257 (310)
T ss_pred             EEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCC-cEEEEEEcCCCc--eE
Confidence            776677  44443    1111       01122345667778999999999999999999887 555555444332  23


Q ss_pred             EeecCCCCCcEEEEe
Q 042434          443 RSCFGGLDGTFIASG  457 (517)
Q Consensus       443 ~~~~~s~~~~~l~~~  457 (517)
                      .+|+..++-..+++.
T Consensus       258 sccFgGkn~d~~yvT  272 (310)
T KOG4499|consen  258 SCCFGGKNLDILYVT  272 (310)
T ss_pred             EEEecCCCccEEEEE
Confidence            344445544444443

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=91.76  E-value=1.5  Score=38.25  Aligned_cols=63  Identities=16%  Similarity=0.112  Sum_probs=46.7

Q ss_pred             EccCCCEEEEEeCCCcEEEEECCCceEEee----------------ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 042434          361 VTPDGENLISVLSDKDIRILNLGTYAERVI----------------SEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAG  424 (517)
Q Consensus       361 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----------------~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~  424 (517)
                      +..++.++++.+.+|.+++||+.+.+....                .....|..+.++.+|.-+++-+ +|..+.|+..-
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            455788999999999999999998772211                2445678888888887766554 57788888643

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=91.47  E-value=1.2  Score=45.36  Aligned_cols=73  Identities=26%  Similarity=0.337  Sum_probs=44.9

Q ss_pred             CCCCEEEEeeCCCcEEEEEecC----CCeeeEEEEecc--------------------CCCCEEEEEECC----CCCeEE
Q 042434          232 NNGEYLASSSSDCSAIIWKVLE----DSKLTLKHTLRS--------------------HQNPVSFVAWSP----DDTKLL  283 (517)
Q Consensus       232 ~~~~~l~t~~~dg~i~iw~~~~----~~~~~~~~~~~~--------------------h~~~v~~l~~s~----~~~~l~  283 (517)
                      ++...++.+..||.+.......    +...... .+..                    ..+.+..++.++    +..+++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  234 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEE-LFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLF  234 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE-----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEE-EeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEE
Confidence            4666777778888888777653    1111111 1111                    124466677766    778999


Q ss_pred             EEeCCCeEEEEECCCCcEEEEe
Q 042434          284 TCGNAEVLKLWDVETGICKHTF  305 (517)
Q Consensus       284 s~~~dg~i~iwd~~~~~~~~~~  305 (517)
                      +.+.|+++++||+.+++++.+.
T Consensus       235 tl~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  235 TLSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EEETTSEEEEEETTTTCEEEEE
T ss_pred             EEeCCCeEEEEECCCCeEEEEe
Confidence            9999999999999999997665

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=91.40  E-value=5.8  Score=31.07  Aligned_cols=114  Identities=13%  Similarity=0.085  Sum_probs=63.0

Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCce---------EEeeccCCCeeEEEEcC----CCCEEEEEeCCCeEEEEEcCCCC
Q 042434          360 AVTPDGENLISVLSDKDIRILNLGTYA---------ERVISEEHPITSLSVSV----DCKNFIVNLNSQEIHMWDVAGKW  426 (517)
Q Consensus       360 ~~~~~~~~l~~~~~dg~i~i~d~~~~~---------~~~~~~~~~i~~~~~s~----~~~~l~~~~~d~~i~~~d~~~~~  426 (517)
                      .|......|++++..|+|.|++.....         .........|++++-.+    +++-++.-+....+..||+....
T Consensus         5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~   84 (136)
T PF14781_consen    5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNS   84 (136)
T ss_pred             EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCc
Confidence            455555678888888999999875432         34555666777776544    23334444456679999997652


Q ss_pred             ccceEEeCcccCceEEEeecCCC-CCcEEEEecCCCcEEEEecCCCceeEE
Q 042434          427 EKPFKYTGHSQNKYVIRSCFGGL-DGTFIASGSENSQIYIWNRRNSKPIEI  476 (517)
Q Consensus       427 ~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~  476 (517)
                      ....+  ....+...+..-.+.. +..++++|+ +..|.-||..-.+...+
T Consensus        85 d~Fyk--e~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~fWt  132 (136)
T PF14781_consen   85 DLFYK--EVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEIFWT  132 (136)
T ss_pred             hhhhh--hCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEEEEE
Confidence            22221  1222222222222222 344555554 56677777654444433

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=91.28  E-value=8.8  Score=39.03  Aligned_cols=78  Identities=15%  Similarity=0.283  Sum_probs=48.3

Q ss_pred             ccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc
Q 042434          221 HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI  300 (517)
Q Consensus       221 h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~  300 (517)
                      ....++++.-+|.|+-++.++.||+|++|+.......+ +.   ....+-..+.|...|  |+++..|..+.-|. ++|-
T Consensus        13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qsk-i~---~~~~p~~nlv~tnhg--l~~~tsdrr~la~~-~dgv   85 (1636)
T KOG3616|consen   13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSK-IC---EEAKPKENLVFTNHG--LVTATSDRRALAWK-EDGV   85 (1636)
T ss_pred             ccceeeeeeecCCCceEEEEecCCcEEEEeecccchhh-hh---hhcCCccceeeeccc--eEEEeccchhheee-ccCc
Confidence            34557788888999999999999999999985432211 11   112333445555433  55666677777775 3443


Q ss_pred             EEEEe
Q 042434          301 CKHTF  305 (517)
Q Consensus       301 ~~~~~  305 (517)
                      ..+.|
T Consensus        86 vqqqf   90 (1636)
T KOG3616|consen   86 VQQQF   90 (1636)
T ss_pred             chhhc
Confidence            33333

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.27  E-value=11  Score=41.33  Aligned_cols=29  Identities=14%  Similarity=0.098  Sum_probs=25.2

Q ss_pred             CcEEEEEECCCCCEEEEeeCCCcEEEEEe
Q 042434          223 NEVWFVQFSNNGEYLASSSSDCSAIIWKV  251 (517)
Q Consensus       223 ~~v~~~~~s~~~~~l~t~~~dg~i~iw~~  251 (517)
                      .....++|+|...++|.|+.+|.|+++-.
T Consensus        36 ~~~~~~afD~~q~llai~t~tg~i~~yg~   64 (993)
T KOG1983|consen   36 STPSALAFDPTQGLLAIGTRTGAIKIYGQ   64 (993)
T ss_pred             CCCcceeeccccceEEEEEecccEEEecc
Confidence            35567899999999999999999999965

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=91.04  E-value=14  Score=34.77  Aligned_cols=108  Identities=14%  Similarity=0.163  Sum_probs=65.4

Q ss_pred             ccCcEEEEEECCCCCEEEEeeCCCc------EEEEEecCC----CeeeEE--EEeccCCC--------CEEEEEECCCCC
Q 042434          221 HKNEVWFVQFSNNGEYLASSSSDCS------AIIWKVLED----SKLTLK--HTLRSHQN--------PVSFVAWSPDDT  280 (517)
Q Consensus       221 h~~~v~~~~~s~~~~~l~t~~~dg~------i~iw~~~~~----~~~~~~--~~~~~h~~--------~v~~l~~s~~~~  280 (517)
                      .-+.+..+.+.|++..+++.+.+|.      +...++...    ......  ..+..-.+        ..-+|++.+++.
T Consensus        18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~   97 (326)
T PF13449_consen   18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS   97 (326)
T ss_pred             ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence            3466778889865555666667776      555554321    111111  11221122        334788877888


Q ss_pred             eEEEEeCC------CeEEEEECCCCcEEEEeC---------------CCCCceEEEEEeCCCCeEEEeeC
Q 042434          281 KLLTCGNA------EVLKLWDVETGICKHTFG---------------DHGFIVSSCAWFPDSKRLVCGSS  329 (517)
Q Consensus       281 ~l~s~~~d------g~i~iwd~~~~~~~~~~~---------------~~~~~v~~i~~~~~~~~l~~~~~  329 (517)
                      ++++.-.+      ..|..++.. |+....+.               ......-+++++|+|+.|+++..
T Consensus        98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E  166 (326)
T PF13449_consen   98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME  166 (326)
T ss_pred             EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence            88877666      778888865 66544431               13456889999999997776544

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=90.98  E-value=14  Score=37.94  Aligned_cols=104  Identities=13%  Similarity=0.138  Sum_probs=57.7

Q ss_pred             EEEEeCCCCeEEEeeCCC---ceeEEEEeCCCCeeEee--eCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--
Q 042434          314 SCAWFPDSKRLVCGSSDT---EKGIFMCDCDGNEIKAW--RGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--  386 (517)
Q Consensus       314 ~i~~~~~~~~l~~~~~d~---~v~i~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--  386 (517)
                      .+.|-|+|..+++-+.||   +..+..+..+|-.-..+  .......+...+|+-....++ ....+.+.+|-..+..  
T Consensus       251 ~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vla-v~~~n~~~lwttkNyhWY  329 (1243)
T COG5290         251 QLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLA-VAEGNLLKLWTTKNYHWY  329 (1243)
T ss_pred             ccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHH-HhhcceEEEEEccceEEE
Confidence            488999999999977554   34466665554222111  111112345556654443333 3355678999877765  


Q ss_pred             EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEE
Q 042434          387 ERVISEEHPITSLSVSVDCKNFIVNLNSQEIH  418 (517)
Q Consensus       387 ~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~  418 (517)
                      ......-..+.-+.|+|....-+.-+..+.|.
T Consensus       330 LK~e~~ip~~s~vkwhpe~~nTl~f~d~~~I~  361 (1243)
T COG5290         330 LKVERQIPGISYVKWHPEEKNTLLFRDGERIL  361 (1243)
T ss_pred             EEEeecCCCcceeeeccccCcEEEEecCCeEE
Confidence            22333344566788888655444333344443

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=90.77  E-value=26  Score=37.47  Aligned_cols=190  Identities=17%  Similarity=0.154  Sum_probs=0.0

Q ss_pred             cccccCCCCCccccccCCCcccccCCCcccEEEeccccCcEEEEEECC-CCCEEEEeeCCCcEEEEEe--cCCCeeeEEE
Q 042434          185 IDSCQYHNSSVAISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSN-NGEYLASSSSDCSAIIWKV--LEDSKLTLKH  261 (517)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~-~~~~l~t~~~dg~i~iw~~--~~~~~~~~~~  261 (517)
                      +..+.|+..   +.........++..|-..+..-.--..+...++|+| +...||.....|...||++  ..........
T Consensus       111 I~~p~~~~~---~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~  187 (765)
T PF10214_consen  111 ILRPEYHRV---ISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLR  187 (765)
T ss_pred             EEEcccccc---cccccCCccccccceeEEechhhcCCCccceEEeccCccceEEEEeccCcEEEEEeccccccCCccee


Q ss_pred             EeccCCCCE------E----EEEECCCCCeEEEEeCCCeEEEEECCCCcE--EEEeCCCCCceEEEEEeCC--CCeEEEe
Q 042434          262 TLRSHQNPV------S----FVAWSPDDTKLLTCGNAEVLKLWDVETGIC--KHTFGDHGFIVSSCAWFPD--SKRLVCG  327 (517)
Q Consensus       262 ~~~~h~~~v------~----~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~i~~~~~--~~~l~~~  327 (517)
                      ....+.+.+      .    .+.|.++.+.|+.++.. .+.++|+++...  .-........|..+.-+|.  +..|+..
T Consensus       188 ~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~-~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT  266 (765)
T PF10214_consen  188 LSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS-KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT  266 (765)
T ss_pred             eccCCCccccCCCcccCcceeeEecCCCCEEEEEcCC-ceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe


Q ss_pred             eCCCceeEEEEeCCC---CeeEeeeCcCCCce----EEEEEccC-CC---EEEEEeCCCcEEEEEC
Q 042434          328 SSDTEKGIFMCDCDG---NEIKAWRGTRIPKV----LDLAVTPD-GE---NLISVLSDKDIRILNL  382 (517)
Q Consensus       328 ~~d~~v~i~~~~~~~---~~~~~~~~~~~~~i----~~~~~~~~-~~---~l~~~~~dg~i~i~d~  382 (517)
                      +..    |..++...   .....+.-.|.-..    ..+..... +.   .++.......|.+|.+
T Consensus       267 s~e----iiw~~~~~~~~~~~~llSwkH~~d~~D~tLrl~~~~~~~~~~~~~lyS~~~~~v~v~~f  328 (765)
T PF10214_consen  267 SKE----IIWLDVKSSSEKLTRLLSWKHFRDPEDPTLRLSVQKVGDTDFVVFLYSRLNPLVYVYFF  328 (765)
T ss_pred             cCe----EEEEEccCCCCCeeeeeecccccCCCCCceEEEEEEcCCCEEEEEEEcCCCCcEEEEEE

These proteins are found in fungi.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=90.63  E-value=6.9  Score=30.64  Aligned_cols=113  Identities=19%  Similarity=0.125  Sum_probs=65.4

Q ss_pred             EEEECCCCCEEEEeeCCCcEEEEEecCCCe-----eeEEEEeccCCCCEEEEEECC-----CCCeEEEEeCCCeEEEEEC
Q 042434          227 FVQFSNNGEYLASSSSDCSAIIWKVLEDSK-----LTLKHTLRSHQNPVSFVAWSP-----DDTKLLTCGNAEVLKLWDV  296 (517)
Q Consensus       227 ~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~-----~~~~~~~~~h~~~v~~l~~s~-----~~~~l~s~~~dg~i~iwd~  296 (517)
                      .-.|......|+.++.-|.|.|++......     ...+..+ .-...|++++-.+     +...|+.|+ ...+..||+
T Consensus         3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV   80 (136)
T PF14781_consen    3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV   80 (136)
T ss_pred             EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence            345666666788888889999998753321     1122222 2456677776433     235566655 458999999


Q ss_pred             CCCcEEEEeCCCCCceEEEEEeC----CCCeEEEeeCCCceeEEEEeCCCCee
Q 042434          297 ETGICKHTFGDHGFIVSSCAWFP----DSKRLVCGSSDTEKGIFMCDCDGNEI  345 (517)
Q Consensus       297 ~~~~~~~~~~~~~~~v~~i~~~~----~~~~l~~~~~d~~v~i~~~~~~~~~~  345 (517)
                      ....-+.. +.-...|.++.+-.    +...+++|+ +..  |.-+|..+..+
T Consensus        81 ~~N~d~Fy-ke~~DGvn~i~~g~~~~~~~~l~ivGG-ncs--i~Gfd~~G~e~  129 (136)
T PF14781_consen   81 ENNSDLFY-KEVPDGVNAIVIGKLGDIPSPLVIVGG-NCS--IQGFDYEGNEI  129 (136)
T ss_pred             ccCchhhh-hhCccceeEEEEEecCCCCCcEEEECc-eEE--EEEeCCCCcEE
Confidence            87655432 23346677776632    233444443 333  66666665443

>COG3877 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.58  E-value=1.2  Score=32.41  Aligned_cols=83  Identities=19%  Similarity=0.241  Sum_probs=56.1

Q ss_pred             CCCCCchHHHHHHHHHHHhhcChHHHHHHHhhhcCeeecChhHHHHHHHHHcCChHHHHHHhhcccCCChhhhcccchhh
Q 042434           10 PRGLIKKYEFVRVVVQCLYSLGYQKSASCLESESGVSYKSKGFERLEVQILNGDWDGCIDTLIAITDLNDERRASVLFPV   89 (517)
Q Consensus        10 ~~~~~~~~~~~~li~q~L~~~g~~~s~~~l~~Esg~~~~~~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~   89 (517)
                      +=...+++++-.+++ ||+-.|   .++-.++|.|+++-+          ..++.|+++..+..-...      .....+
T Consensus        38 ~F~~Lt~d~LeFv~l-f~r~RG---nlKEvEr~lg~sYpt----------vR~kld~vlramgy~p~~------e~~~~i   97 (122)
T COG3877          38 KFEYLTSDQLEFVEL-FLRCRG---NLKEVERELGISYPT----------VRTKLDEVLRAMGYNPDS------ENSVNI   97 (122)
T ss_pred             cccccCHhHhHHHHH-HHHHcc---CHHHHHHHHCCccHH----------HHHHHHHHHHHcCCCCCC------CChhhh
Confidence            344567777776665 778777   566789999998766          335566666655543222      234566


Q ss_pred             hhhhhhHhhhcCC--hhHHHHHHHh
Q 042434           90 FKQCFLEYLNRGD--DSLALNVLRK  112 (517)
Q Consensus        90 ~~~~~~el~~~~~--~~~a~~~lr~  112 (517)
                      -+.+++..++.|+  .++|+..|++
T Consensus        98 ~~~~i~~qle~Gei~peeA~~~L~k  122 (122)
T COG3877          98 GKKKIIDQLEKGEISPEEAIKMLNK  122 (122)
T ss_pred             hHHHHHHHHHcCCCCHHHHHHHhcC
Confidence            7788899999887  5678888763

>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins

Probab=90.48  E-value=0.64  Score=35.05  Aligned_cols=76  Identities=25%  Similarity=0.277  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHhhcChHHHHHHHhhhcCeeecChhHHHHHHHHHcCChHHHHHHhhcccCCChhhhcccchhhhhhhhhH
Q 042434           17 YEFVRVVVQCLYSLGYQKSASCLESESGVSYKSKGFERLEVQILNGDWDGCIDTLIAITDLNDERRASVLFPVFKQCFLE   96 (517)
Q Consensus        17 ~~~~~li~q~L~~~g~~~s~~~l~~Esg~~~~~~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~e   96 (517)
                      .|=...|..|++..|   +++.+++|.|++|.+-- .+|         |+++..|......      ...-...+..+++
T Consensus        36 ~E~~~Fi~~Fi~~rG---nlKe~e~~lgiSYPTvR-~rL---------d~ii~~lg~~~~~------~~~~~~~~~~IL~   96 (113)
T PF09862_consen   36 PEQLEFIKLFIKNRG---NLKEMEKELGISYPTVR-NRL---------DKIIEKLGYEEDE------EEEEEDERKEILD   96 (113)
T ss_pred             HHHHHHHHHHHHhcC---CHHHHHHHHCCCcHHHH-HHH---------HHHHHHhCCCCCc------ccccchhHHHHHH
Confidence            344567889999999   78899999999988721 222         2333333331111      1122235677888


Q ss_pred             hhhcCC--hhHHHHHHH
Q 042434           97 YLNRGD--DSLALNVLR  111 (517)
Q Consensus        97 l~~~~~--~~~a~~~lr  111 (517)
                      .|+.|+  .++|++.|+
T Consensus        97 ~L~~GeIs~eeA~~~Lk  113 (113)
T PF09862_consen   97 KLEKGEISVEEALEILK  113 (113)
T ss_pred             HHHcCCCCHHHHHHHhC
Confidence            898887  566777664

>PLN02153 epithiospecifier protein

Probab=90.42  E-value=16  Score=34.56  Aligned_cols=108  Identities=6%  Similarity=-0.002  Sum_probs=53.9

Q ss_pred             CCCeEEEEeCC-----CeEEEEECCCCcEEEE--eCC---CCCceEEEEEeCCCCeEEEeeCCCc---------eeEEEE
Q 042434          278 DDTKLLTCGNA-----EVLKLWDVETGICKHT--FGD---HGFIVSSCAWFPDSKRLVCGSSDTE---------KGIFMC  338 (517)
Q Consensus       278 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~~--~~~---~~~~v~~i~~~~~~~~l~~~~~d~~---------v~i~~~  338 (517)
                      ++..++.|+.+     ..+.+||..+.+-...  +..   ........+..-+++.++.|+.+..         -.++.+
T Consensus        85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y  164 (341)
T PLN02153         85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY  164 (341)
T ss_pred             CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence            46677777754     2577889877654321  110   1111122222335667777775421         136777


Q ss_pred             eCCCCeeEeeeCcC---CCc-eEEEEEccCCCEEEEEeC-------------CCcEEEEECCCce
Q 042434          339 DCDGNEIKAWRGTR---IPK-VLDLAVTPDGENLISVLS-------------DKDIRILNLGTYA  386 (517)
Q Consensus       339 ~~~~~~~~~~~~~~---~~~-i~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~~  386 (517)
                      |.....-.......   ... -.+++ .-+++.++.++.             ...+.+||+.+.+
T Consensus       165 d~~~~~W~~l~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~  228 (341)
T PLN02153        165 NIADGKWVQLPDPGENFEKRGGAGFA-VVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGK  228 (341)
T ss_pred             ECCCCeEeeCCCCCCCCCCCCcceEE-EECCeEEEEeccccccccCCccceecCceEEEEcCCCc
Confidence            87765433322211   001 11222 235555555542             2468899998876

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=90.21  E-value=4.7  Score=41.46  Aligned_cols=105  Identities=11%  Similarity=0.133  Sum_probs=67.7

Q ss_pred             CCCEEEEeeCCCcEEEEEecC-------C---C-------eeeEEEEeccCCCCEEEEEEC--CCCCeEEEEeCCCeEEE
Q 042434          233 NGEYLASSSSDCSAIIWKVLE-------D---S-------KLTLKHTLRSHQNPVSFVAWS--PDDTKLLTCGNAEVLKL  293 (517)
Q Consensus       233 ~~~~l~t~~~dg~i~iw~~~~-------~---~-------~~~~~~~~~~h~~~v~~l~~s--~~~~~l~s~~~dg~i~i  293 (517)
                      +...|+.|..||.|.+|.++.       .   .       ...+...+. -...++.++++  ...++||+++....|.|
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV  191 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTV  191 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEE
Confidence            556889999999999997621       0   0       011112222 34578999998  77888888888887877


Q ss_pred             EECCCC--cEEE-EeCCCCCceEEEEEeCCC---C---eEEEeeCCCceeEEEEeC
Q 042434          294 WDVETG--ICKH-TFGDHGFIVSSCAWFPDS---K---RLVCGSSDTEKGIFMCDC  340 (517)
Q Consensus       294 wd~~~~--~~~~-~~~~~~~~v~~i~~~~~~---~---~l~~~~~d~~v~i~~~~~  340 (517)
                      |-....  +... .-..+...|.+|+|.++.   .   .+++++-.|.  ++.|+.
T Consensus       192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~--v~~~~I  245 (717)
T PF08728_consen  192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGE--VWTFKI  245 (717)
T ss_pred             EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCc--EEEEEE
Confidence            755332  1111 111356778899998753   2   7788888998  555444

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=89.90  E-value=11  Score=31.97  Aligned_cols=178  Identities=13%  Similarity=0.056  Sum_probs=94.0

Q ss_pred             CCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEE-EEeCCCcEEEEECCCce-EEeeccCCCee
Q 042434          320 DSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLI-SVLSDKDIRILNLGTYA-ERVISEEHPIT  397 (517)
Q Consensus       320 ~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~-~~~~~~~~~i~  397 (517)
                      +|.++.+.+.-|..+|+.|++.+.+......-..+.+..=-...-|..+. ..-.+|.-..+|.++.+ .......+.-.
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGW  134 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGW  134 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcce
Confidence            56778888888877899999985443222111111121111111233332 33457778888887766 22222222222


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCccc--CceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeE
Q 042434          398 SLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQ--NKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIE  475 (517)
Q Consensus       398 ~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  475 (517)
                      .  +..|++.++.+.....++.-|..+. ....+......  ++..+.-+- --||...|-.-.+..|...|..+|+.+.
T Consensus       135 g--Lt~d~~~LimsdGsatL~frdP~tf-a~~~~v~VT~~g~pv~~LNELE-~VdG~lyANVw~t~~I~rI~p~sGrV~~  210 (262)
T COG3823         135 G--LTSDDKNLIMSDGSATLQFRDPKTF-AELDTVQVTDDGVPVSKLNELE-WVDGELYANVWQTTRIARIDPDSGRVVA  210 (262)
T ss_pred             e--eecCCcceEeeCCceEEEecCHHHh-hhcceEEEEECCeeccccccee-eeccEEEEeeeeecceEEEcCCCCcEEE
Confidence            2  3345666777777777777776543 11111111111  111111111 1255555555555566666777777655


Q ss_pred             Eec------------CCCCCeeEEEecCCCCcEEEEee
Q 042434          476 ILS------------GHSMTVNCVSWNPKRPKMLASAS  501 (517)
Q Consensus       476 ~~~------------~h~~~v~~v~~~~~~~~~l~s~~  501 (517)
                      .+.            .|....+.+++.|++.++++||-
T Consensus       211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK  248 (262)
T COG3823         211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK  248 (262)
T ss_pred             EEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence            442            35567889999999867777763

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=89.72  E-value=36  Score=37.48  Aligned_cols=34  Identities=15%  Similarity=0.119  Sum_probs=21.6

Q ss_pred             eccccCcEEEEEECC--CCC-EE----EEeeCCCcEEEEEe
Q 042434          218 LTEHKNEVWFVQFSN--NGE-YL----ASSSSDCSAIIWKV  251 (517)
Q Consensus       218 l~~h~~~v~~~~~s~--~~~-~l----~t~~~dg~i~iw~~  251 (517)
                      ..||..+|.|....-  ++. +|    ++.+.||++.|=|.
T Consensus       343 gdG~qR~veC~~C~G~a~~~~L~aPvala~a~DGSl~VGDf  383 (1899)
T KOG4659|consen  343 GDGHQRDVECPKCEGKADSISLFAPVALAYAPDGSLIVGDF  383 (1899)
T ss_pred             cCcccccccCCCCCCccccceeeceeeEEEcCCCcEEEccc
Confidence            467888888876643  222 22    23457898888665

>PLN02193 nitrile-specifier protein

Probab=89.30  E-value=25  Score=35.08  Aligned_cols=148  Identities=9%  Similarity=-0.100  Sum_probs=73.2

Q ss_pred             CCCeEEEEeCCC-----eEEEEECCCCcEEEEeCC---CCCceEEEEEeCCCCeEEEeeCCCce---eEEEEeCCCCeeE
Q 042434          278 DDTKLLTCGNAE-----VLKLWDVETGICKHTFGD---HGFIVSSCAWFPDSKRLVCGSSDTEK---GIFMCDCDGNEIK  346 (517)
Q Consensus       278 ~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~---~~~~v~~i~~~~~~~~l~~~~~d~~v---~i~~~~~~~~~~~  346 (517)
                      ++...+.|+.++     .+.++|+.+.+-...-..   ....-.+.+..-+++.++.|+.++..   .++.+|+....-.
T Consensus       228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~  307 (470)
T PLN02193        228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWF  307 (470)
T ss_pred             CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence            456667777553     578889887654332111   11111111222356677777765421   2667777655433


Q ss_pred             eeeCcC---CCceEEEEEccCCCEEEEEeCC----CcEEEEECCCceEEeecc-----CCCeeEEEEcCCCCEEEEEeCC
Q 042434          347 AWRGTR---IPKVLDLAVTPDGENLISVLSD----KDIRILNLGTYAERVISE-----EHPITSLSVSVDCKNFIVNLNS  414 (517)
Q Consensus       347 ~~~~~~---~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~-----~~~i~~~~~s~~~~~l~~~~~d  414 (517)
                      ......   ..........-+++.++.++.+    ..+.+||+.+.+-.....     .......+..-+++.++.|+..
T Consensus       308 ~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~  387 (470)
T PLN02193        308 HCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEI  387 (470)
T ss_pred             eCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCcc
Confidence            322110   0011111112356677776655    468999998877222211     1111112223355667777642


Q ss_pred             --------------CeEEEEEcCCC
Q 042434          415 --------------QEIHMWDVAGK  425 (517)
Q Consensus       415 --------------~~i~~~d~~~~  425 (517)
                                    +.+.+||+.+.
T Consensus       388 ~~~~~~~~~~~~~~ndv~~~D~~t~  412 (470)
T PLN02193        388 AMDPLAHVGPGQLTDGTFALDTETL  412 (470)
T ss_pred             CCccccccCccceeccEEEEEcCcC
Confidence                          24788888654

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=89.18  E-value=22  Score=34.34  Aligned_cols=105  Identities=9%  Similarity=0.072  Sum_probs=55.4

Q ss_pred             eEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCee-EeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCc-----
Q 042434          312 VSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEI-KAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTY-----  385 (517)
Q Consensus       312 v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----  385 (517)
                      ...+..++++.+++.+... .  ++.-...+... ..........+..+.+.+++..++++ ..|.+..-+-...     
T Consensus       241 f~~v~~~~dG~~~~vg~~G-~--~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~S~d~G~~~~~~  316 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRG-N--FYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYVSKGTGLTEEDF  316 (398)
T ss_pred             eeeEEEcCCCCEEEEECCc-c--EEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEEecCCCCccccc
Confidence            3445566777666655443 3  44333333321 33333334478899999998877766 5555443222211     


Q ss_pred             eEEeec---cCCCeeEEEEcCCCCEEEEEeCCCeEEEEE
Q 042434          386 AERVIS---EEHPITSLSVSVDCKNFIVNLNSQEIHMWD  421 (517)
Q Consensus       386 ~~~~~~---~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d  421 (517)
                      ......   ....+..+.+.+++..+++| ..|.+....
T Consensus       317 ~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~  354 (398)
T PLN00033        317 DFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST  354 (398)
T ss_pred             ceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC
Confidence            111111   22357888898877655554 556555443

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=88.98  E-value=2.1  Score=25.57  Aligned_cols=40  Identities=15%  Similarity=0.059  Sum_probs=27.3

Q ss_pred             CCCcEEEEec-CCCcEEEEecCCCceeEEecCCCCCeeEEEe
Q 042434          449 LDGTFIASGS-ENSQIYIWNRRNSKPIEILSGHSMTVNCVSW  489 (517)
Q Consensus       449 ~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~  489 (517)
                      |++++|+++. .+++|.++|..+++.+..+... .....++|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence            4666666554 5789999999999888877652 33344444

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG2006 consensus WD40 repeat protein [General function prediction only]

Probab=88.94  E-value=8  Score=40.86  Aligned_cols=76  Identities=13%  Similarity=0.245  Sum_probs=53.6

Q ss_pred             CcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCe-ee-EEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCC
Q 042434          223 NEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSK-LT-LKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVET  298 (517)
Q Consensus       223 ~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~-~~-~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~  298 (517)
                      +.-.|+.....+..+++|...|.+.+++...... .. .-..-.+++.++..+.|.|+++.++.+-..|...+|....
T Consensus       149 ~DAvc~SV~~e~~lla~G~~~g~v~~y~~~~~~ssl~~s~~~~~~~ti~~~~~~~~p~~~~~av~~~~g~ls~wS~~g  226 (1023)
T KOG2006|consen  149 GDAVCCSVNHEFQLLAYGTPVGEVLLYSIDEANSSLVFSNRDDDTLTVPDNNSSWRPDQNGFAVTWEKGFLAFWSNQG  226 (1023)
T ss_pred             ccceeeeccchhhhheecccccceeehhhhhhccceeeecccCccccccccccCcCCccceeeeeecccceEEecccc
Confidence            4445667777889999999999999998753211 10 1111123444777889999999999998889999997644

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.68  E-value=25  Score=38.61  Aligned_cols=138  Identities=13%  Similarity=0.264  Sum_probs=82.9

Q ss_pred             eCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEE--------CCCCCeEEEEeCCCeEEEEECCC----CcE-----EE
Q 042434          241 SSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAW--------SPDDTKLLTCGNAEVLKLWDVET----GIC-----KH  303 (517)
Q Consensus       241 ~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~--------s~~~~~l~s~~~dg~i~iwd~~~----~~~-----~~  303 (517)
                      +.|..+.+|++++++...   .+.+-...|..+..        -|.=++++..+.--.|.++-+.-    +..     ..
T Consensus        96 TiDn~L~lWny~~~~e~~---~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~  172 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELA---EYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSF  172 (1311)
T ss_pred             EeCCeEEEEEcCCCCccc---cccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccce
Confidence            458899999998865553   33334445555443        33334454444555566664421    111     01


Q ss_pred             EeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEE--eCC----CC-e----------------eEeeeCcCCCceEEEE
Q 042434          304 TFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMC--DCD----GN-E----------------IKAWRGTRIPKVLDLA  360 (517)
Q Consensus       304 ~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~--~~~----~~-~----------------~~~~~~~~~~~i~~~~  360 (517)
                      ++...+..|.|+....+|+.|++|- ||.  +|.+  ...    +. +                +..+.+.+..+|..+.
T Consensus       173 ~i~~dg~~V~~I~~t~nGRIF~~G~-dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~  249 (1311)
T KOG1900|consen  173 KISVDGVSVNCITYTENGRIFFAGR-DGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQIT  249 (1311)
T ss_pred             eeecCCceEEEEEeccCCcEEEeec-CCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeE
Confidence            2223467788999777777666654 445  5533  221    01 0                1111223455899999


Q ss_pred             EccCCCEEEEEeCCCcEEEEECCC
Q 042434          361 VTPDGENLISVLSDKDIRILNLGT  384 (517)
Q Consensus       361 ~~~~~~~l~~~~~dg~i~i~d~~~  384 (517)
                      +......+.+-+..|+|.+||+..
T Consensus       250 ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  250 IDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             eccccceeeeeccCceEEEEEccC
Confidence            998888999999999999999976

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=88.68  E-value=15  Score=31.62  Aligned_cols=58  Identities=16%  Similarity=0.260  Sum_probs=39.6

Q ss_pred             CEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCC---C---eEEEE
Q 042434          235 EYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNA---E---VLKLW  294 (517)
Q Consensus       235 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---g---~i~iw  294 (517)
                      +.|..+...+.|.+|++. .+..+...++.. -+.|..+.++..|++|++--.+   .   .+++|
T Consensus        29 d~Lfva~~g~~Vev~~l~-~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y   92 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLE-QEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAY   92 (215)
T ss_pred             ceEEEEcCCCEEEEEEcc-cCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEE
Confidence            344333556789999997 333455555554 3889999999999999986332   2   56665

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=88.40  E-value=13  Score=34.92  Aligned_cols=110  Identities=11%  Similarity=0.015  Sum_probs=63.0

Q ss_pred             CceEEEEEeCCCCeEEEee-CCCceeEEEEeCCCCeeEeeeCcCCC----ceEEEEEccCCCE-----------------
Q 042434          310 FIVSSCAWFPDSKRLVCGS-SDTEKGIFMCDCDGNEIKAWRGTRIP----KVLDLAVTPDGEN-----------------  367 (517)
Q Consensus       310 ~~v~~i~~~~~~~~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~-----------------  367 (517)
                      +....++|...+.-++.+. .-|   ++..+..++..........+    -..++.+.++|..                 
T Consensus       115 GRPLGl~f~~~ggdL~VaDAYlG---L~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a  191 (376)
T KOG1520|consen  115 GRPLGIRFDKKGGDLYVADAYLG---LLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFA  191 (376)
T ss_pred             CCcceEEeccCCCeEEEEeccee---eEEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEe
Confidence            4456788887774444443 233   77777766553333222111    1233444443322                 


Q ss_pred             EEEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCC-CeEEEEEc
Q 042434          368 LISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNS-QEIHMWDV  422 (517)
Q Consensus       368 l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d-~~i~~~d~  422 (517)
                      ++.+..+|.+.-||..+.. ......-.-.+.++.|||+.+++++-.. ..|+-|=+
T Consensus       192 ~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi  248 (376)
T KOG1520|consen  192 ALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYWI  248 (376)
T ss_pred             eecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeeccceeeeeEe
Confidence            2233456788888888877 4555556667889999999998887543 24443333

>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]

Probab=88.35  E-value=22  Score=38.67  Aligned_cols=144  Identities=13%  Similarity=0.116  Sum_probs=82.6

Q ss_pred             CEEEEeeC---------CCcEEEEEecC-----C-----CeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEE
Q 042434          235 EYLASSSS---------DCSAIIWKVLE-----D-----SKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWD  295 (517)
Q Consensus       235 ~~l~t~~~---------dg~i~iw~~~~-----~-----~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd  295 (517)
                      .|||+|..         -|.+.|+|+-.     +     .+++.+. .....++|..++=- +| +|+++ ....|.||+
T Consensus      1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~-~eE~KGtVsavceV-~G-~l~~~-~GqKI~v~~ 1122 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELY-IEEQKGTVSAVCEV-RG-HLLSS-QGQKIIVRK 1122 (1366)
T ss_pred             ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeee-hhhcccceEEEEEe-cc-EEEEc-cCcEEEEEE
Confidence            58888743         48899999842     1     1111111 12345777766643 45 45553 344799999


Q ss_pred             CCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcC-CCceEEEEEccCCC--EEEEEe
Q 042434          296 VETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTR-IPKVLDLAVTPDGE--NLISVL  372 (517)
Q Consensus       296 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~--~l~~~~  372 (517)
                      ++.+..+.-..--.-++.-....--.++|+.|.--..+....|......+..+.... .-.+.++.|--+|.  .++++.
T Consensus      1123 l~r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsD 1202 (1366)
T KOG1896|consen 1123 LDRDSELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSD 1202 (1366)
T ss_pred             eccCCcceeeEEeccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEc
Confidence            944332211111122222222223356777777777766777777666555444322 22577788877776  577888


Q ss_pred             CCCcEEEEEC
Q 042434          373 SDKDIRILNL  382 (517)
Q Consensus       373 ~dg~i~i~d~  382 (517)
                      .++.|++|-.
T Consensus      1203 a~rNi~vy~Y 1212 (1366)
T KOG1896|consen 1203 ADRNIHVYMY 1212 (1366)
T ss_pred             CCCcEEEEEe
Confidence            8898888754

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=88.31  E-value=2.3  Score=24.99  Aligned_cols=33  Identities=24%  Similarity=0.260  Sum_probs=21.9

Q ss_pred             EeccccCcEEEEEECCCCCEEEEeeC-C--CcEEEE
Q 042434          217 ILTEHKNEVWFVQFSNNGEYLASSSS-D--CSAIIW  249 (517)
Q Consensus       217 ~l~~h~~~v~~~~~s~~~~~l~t~~~-d--g~i~iw  249 (517)
                      .+....+.-.+..|||||++|+.++. +  |.-.||
T Consensus         3 ~~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    3 QLTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             EES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CcccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            34445667888999999998887654 4  555555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=88.08  E-value=20  Score=32.57  Aligned_cols=201  Identities=12%  Similarity=0.115  Sum_probs=111.1

Q ss_pred             CcEEEEEECCCCCEEEEeeCCCcEEEEEecCC----CeeeEEEEecc-----CCCCEEEEEECCCCC------------e
Q 042434          223 NEVWFVQFSNNGEYLASSSSDCSAIIWKVLED----SKLTLKHTLRS-----HQNPVSFVAWSPDDT------------K  281 (517)
Q Consensus       223 ~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~----~~~~~~~~~~~-----h~~~v~~l~~s~~~~------------~  281 (517)
                      -.-|.++++|.+.+-++....+...+||....    ....+..++..     .....+.+.|+....            .
T Consensus        23 ~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~  102 (336)
T TIGR03118        23 RNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR  102 (336)
T ss_pred             cccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence            34678999999988787777889999998621    11123333332     234577788775332            3


Q ss_pred             EEEEeCCCeEEEEECCCCcE-----EEEeC-CCCCce-EEEEEeCC--CCeEEEeeC-CCceeEEEEeCCCCeeEe---e
Q 042434          282 LLTCGNAEVLKLWDVETGIC-----KHTFG-DHGFIV-SSCAWFPD--SKRLVCGSS-DTEKGIFMCDCDGNEIKA---W  348 (517)
Q Consensus       282 l~s~~~dg~i~iwd~~~~~~-----~~~~~-~~~~~v-~~i~~~~~--~~~l~~~~~-d~~v~i~~~~~~~~~~~~---~  348 (517)
                      ++.++.||+|.-|...-+..     ...+. .....| ..+++...  +.+|..+.. .++  |-++|..-..+..   +
T Consensus       103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~--IDVFd~~f~~~~~~g~F  180 (336)
T TIGR03118       103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGR--IDVFKGSFRPPPLPGSF  180 (336)
T ss_pred             EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCc--eEEecCccccccCCCCc
Confidence            56778999999998532221     12222 112223 34555432  455555443 445  5555544322211   0


Q ss_pred             eCcC----CC-----------ceEEEEEccCCCEEEEEeCCCcEEEEECCCceEEeeccCC---CeeEEEEcC------C
Q 042434          349 RGTR----IP-----------KVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEH---PITSLSVSV------D  404 (517)
Q Consensus       349 ~~~~----~~-----------~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~i~~~~~s~------~  404 (517)
                      ....    ..           .|+-..-.+++..=+.+..-|.|-+||+...-........   ....++..|      .
T Consensus       181 ~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~s  260 (336)
T TIGR03118       181 IDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLS  260 (336)
T ss_pred             cCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCC
Confidence            0000    00           1111111222323334444578999998876654444333   345566655      4


Q ss_pred             CCEEEEEeCCCeEEEEEcCCC
Q 042434          405 CKNFIVNLNSQEIHMWDVAGK  425 (517)
Q Consensus       405 ~~~l~~~~~d~~i~~~d~~~~  425 (517)
                      +..|+-...||+|..||..++
T Consensus       261 g~lLVGNFGDG~InaFD~~sG  281 (336)
T TIGR03118       261 GALLVGNFGDGTINAYDPQSG  281 (336)
T ss_pred             CCeEEeecCCceeEEecCCCC
Confidence            667777778999999998765

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=87.64  E-value=18  Score=32.10  Aligned_cols=134  Identities=16%  Similarity=0.090  Sum_probs=75.6

Q ss_pred             eEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeC-CCceeEEEEeCCC----CeeEeee--CcCCCceEEEEEc
Q 042434          290 VLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSS-DTEKGIFMCDCDG----NEIKAWR--GTRIPKVLDLAVT  362 (517)
Q Consensus       290 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-d~~v~i~~~~~~~----~~~~~~~--~~~~~~i~~~~~~  362 (517)
                      .-.+||+.+++....-........+-.+.+||+.+.+|+. +|.-.+..++...    .......  -.....-.+....
T Consensus        47 ~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L  126 (243)
T PF07250_consen   47 HSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL  126 (243)
T ss_pred             EEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence            3568999887654322233333444567889999999876 4444466666543    1111110  0111234456677


Q ss_pred             cCCCEEEEEeCCC-cEEEEECCCce---EE--eec------cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 042434          363 PDGENLISVLSDK-DIRILNLGTYA---ER--VIS------EEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK  425 (517)
Q Consensus       363 ~~~~~l~~~~~dg-~i~i~d~~~~~---~~--~~~------~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~  425 (517)
                      +||+.++.|+... +..+|.-....   ..  ...      ...--..+...|+|+.++.+..+.  .+||..+.
T Consensus       127 ~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n  199 (243)
T PF07250_consen  127 PDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTN  199 (243)
T ss_pred             CCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCC
Confidence            8999999888775 34455442211   11  111      112234567789999998887765  45576554

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=87.57  E-value=3.3  Score=24.63  Aligned_cols=31  Identities=26%  Similarity=0.302  Sum_probs=23.6

Q ss_pred             CCCCeEEEEe-CCCeEEEEECCCCcEEEEeCC
Q 042434          277 PDDTKLLTCG-NAEVLKLWDVETGICKHTFGD  307 (517)
Q Consensus       277 ~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~  307 (517)
                      |++++|+++. .+++|.++|..+++.+..+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            5677666654 578999999999888877754

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=87.45  E-value=3  Score=24.49  Aligned_cols=31  Identities=10%  Similarity=0.303  Sum_probs=21.9

Q ss_pred             CCCCCeeEEEecCCCCcEEEEeeCC--CcEEEe
Q 042434          479 GHSMTVNCVSWNPKRPKMLASASDD--HTIRIW  509 (517)
Q Consensus       479 ~h~~~v~~v~~~~~~~~~l~s~~~d--g~v~iw  509 (517)
                      .....-....|+|||..++.++..+  |.-.||
T Consensus         6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            3455678899999997667777777  777776

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=87.10  E-value=28  Score=33.13  Aligned_cols=194  Identities=13%  Similarity=0.206  Sum_probs=0.0

Q ss_pred             eCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCce---EEEEEccCCCEEEEEeCC----CcEEEEECCCce---E
Q 042434          318 FPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKV---LDLAVTPDGENLISVLSD----KDIRILNLGTYA---E  387 (517)
Q Consensus       318 ~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i---~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~---~  387 (517)
                      .|...+++....++-  +++||+.++.+..+.......|   ..+.+....--|++++.-    ..|++|.+....   .
T Consensus        65 dp~kSlIigTdK~~G--L~VYdL~Gk~lq~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~  142 (381)
T PF02333_consen   65 DPAKSLIIGTDKKGG--LYVYDLDGKELQSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT  142 (381)
T ss_dssp             -GGG-EEEEEETTTE--EEEEETTS-EEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred             CcccceEEEEeCCCC--EEEEcCCCcEEEeecCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce


Q ss_pred             EeeccCCCe---------eEEEEcCCCC--EEEEEeCCCeEEEEEc--CCCCccceEEeCcccCceEEEeecCCCCCcEE
Q 042434          388 RVISEEHPI---------TSLSVSVDCK--NFIVNLNSQEIHMWDV--AGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFI  454 (517)
Q Consensus       388 ~~~~~~~~i---------~~~~~s~~~~--~l~~~~~d~~i~~~d~--~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  454 (517)
                      .......++         .|+--++...  +.++...+|.+.-|.+  .............-.-...+..|.......+|
T Consensus       143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~L  222 (381)
T PF02333_consen  143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRL  222 (381)
T ss_dssp             E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEE
T ss_pred             EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCE


Q ss_pred             EEecCCCcEEEEecC-----CCceeEEecC--CCCCeeEEEe----cCCCCcEEEEeeCCCcEEEeCCCCC
Q 042434          455 ASGSENSQIYIWNRR-----NSKPIEILSG--HSMTVNCVSW----NPKRPKMLASASDDHTIRIWGPCQS  514 (517)
Q Consensus       455 ~~~~~dg~i~iwd~~-----~~~~~~~~~~--h~~~v~~v~~----~~~~~~~l~s~~~dg~v~iw~~~~~  514 (517)
                      +.|-++.-|.-|+.+     .++.+....+  ....|-.|+.    ...| .+|+|.-.+++..||+....
T Consensus       223 YvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~g-YLivSsQG~~sf~Vy~r~~~  292 (381)
T PF02333_consen  223 YVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKG-YLIVSSQGDNSFAVYDREGP  292 (381)
T ss_dssp             EEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-E-EEEEEEGGGTEEEEEESSTT
T ss_pred             EEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCe-EEEEEcCCCCeEEEEecCCC

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=86.59  E-value=37  Score=33.94  Aligned_cols=144  Identities=15%  Similarity=0.063  Sum_probs=68.4

Q ss_pred             EEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceEEeeccCCC----eeEEEEcCCCCEEEE
Q 042434          335 IFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHP----ITSLSVSVDCKNFIV  410 (517)
Q Consensus       335 i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----i~~~~~s~~~~~l~~  410 (517)
                      .+.+|..|.....+..... ....+...++|.+++...  +.+..+|+-............    -..+...|+|++|+.
T Consensus       130 ~~~iD~~G~Vrw~~~~~~~-~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l  206 (477)
T PF05935_consen  130 TYLIDNNGDVRWYLPLDSG-SDNSFKQLPNGNLLIGSG--NRLYEIDLLGKVIWEYDLPGGYYDFHHDIDELPNGNLLIL  206 (477)
T ss_dssp             EEEEETTS-EEEEE-GGGT---SSEEE-TTS-EEEEEB--TEEEEE-TT--EEEEEE--TTEE-B-S-EEE-TTS-EEEE
T ss_pred             EEEECCCccEEEEEccCcc-ccceeeEcCCCCEEEecC--CceEEEcCCCCEEEeeecCCcccccccccEECCCCCEEEE
Confidence            7777777765544433221 111166778888776555  778888887654222222221    355677788888877


Q ss_pred             EeC--------------C--------C-eEEEEEcCCCCccceE------------EeCcccCceEEEeecCCC-CCcEE
Q 042434          411 NLN--------------S--------Q-EIHMWDVAGKWEKPFK------------YTGHSQNKYVIRSCFGGL-DGTFI  454 (517)
Q Consensus       411 ~~~--------------d--------~-~i~~~d~~~~~~~~~~------------~~~~~~~~~~i~~~~~s~-~~~~l  454 (517)
                      +..              |        | .+..||+..-......            .......-..+.++.+.+ ++.++
T Consensus       207 ~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~ii  286 (477)
T PF05935_consen  207 ASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSII  286 (477)
T ss_dssp             EEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEE
T ss_pred             EeecccccCCCCccEecCEEEEECCCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEE
Confidence            761              1        1 2444554322111110            001111113345555555 66777


Q ss_pred             EEecCCCcEEEEecCCCceeEEecCCC
Q 042434          455 ASGSENSQIYIWNRRNSKPIEILSGHS  481 (517)
Q Consensus       455 ~~~~~dg~i~iwd~~~~~~~~~~~~h~  481 (517)
                      +++-.-..|...|.++++....+..|.
T Consensus       287 vSsR~~s~V~~Id~~t~~i~Wilg~~~  313 (477)
T PF05935_consen  287 VSSRHQSAVIKIDYRTGKIKWILGPPG  313 (477)
T ss_dssp             EEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred             EEcCcceEEEEEECCCCcEEEEeCCCC
Confidence            776666689999988998888876653

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	517
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-26
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		2e-26
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		4e-26
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		4e-26
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		4e-26
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		4e-26
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		4e-26
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		4e-26
2h9l_A	329	Wdr5delta23 Length = 329		4e-26
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		4e-26
2g99_A	308	Structural Basis For The Specific Recognition Of Me		4e-26
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		4e-26
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		5e-26
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		5e-26
2gnq_A	336	Structure Of Wdr5 Length = 336		5e-26
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		5e-26
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-25
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		3e-25
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		8e-17
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		3e-16
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		3e-16
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		6e-13
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		2e-11
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		2e-09
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		3e-09
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		3e-09
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		4e-09
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		6e-08
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		3e-07
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		1e-06
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		1e-06
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		1e-06
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		2e-06
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		3e-06
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		3e-06
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		3e-06
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		3e-06
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		4e-06
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		4e-06
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		4e-06
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		4e-06
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		7e-06
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		7e-04
3bg0_A	316	Architecture Of A Coat For The Nuclear Pore Membran		1e-05
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		1e-05
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		1e-05
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		3e-04
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		4e-04
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		2e-05
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		2e-05
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		2e-05
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		2e-05
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		2e-05
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		2e-05
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		2e-05
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		2e-05
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		2e-05
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		2e-05
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		2e-05
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		2e-05
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		2e-05
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		2e-05
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		3e-05
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		5e-05
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		1e-04
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		3e-04
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		2e-04
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		3e-04

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score =  117 bits (292), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/298 (31%), Positives = 148/298 (49%), Gaps = 14/298 (4%)
Query: 218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP 277
           L  H   V  V+FS NGE+LASSS+D    IW   +      + T+  H+  +S VAWS 
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---FEKTISGHKLGISDVAWSS 78
Query: 278 DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM 337
           D   L++  + + LK+WDV +G C  T   H   V  C + P S  +V GS D    I+ 
Sbjct: 79  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 338 CDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL--GTYAERVISEEH- 394
               G  +K       P V  +    DG  ++S   D   RI +   G   + +I +++ 
Sbjct: 139 VKT-GMCLKTLPAHSDP-VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 395 PITSLSVSVDCKNFIVNLNSQEIHMWDVA-GKWEKPFKYTGHSQNKYVIRSCFGGLDGTF 453
           P++ +  S + K  +      ++ +WD + GK  K   YTGH   KY I + F    G +
Sbjct: 197 PVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLK--TYTGHKNEKYCIFANFSVTGGKW 254
Query: 454 IASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS--DDHTIRIW 509
           I SGSE++ +YIWN +  + ++ L GH+  V   + +P    ++ASA+  +D TI++W
Sbjct: 255 IVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLW 311

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score =  116 bits (291), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 149/300 (49%), Gaps = 20/300 (6%)
Query: 213 ETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSF 272
           + +Q LT H + VW V FS +G+ +AS+S D +  +W    +    L  TL  H + V  
Sbjct: 48  QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW----NRNGQLLQTLTGHSSSVRG 103
Query: 273 VAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTE 332
           VA+SPD   + +  + + +KLW+   G    T   H   V   A+ PD + +   S D  
Sbjct: 104 VAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDD-- 160
Query: 333 KGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL-GTYAERVIS 391
           K + + + +G  ++   G     V  +A +PDG+ + S   DK +++ N  G   + +  
Sbjct: 161 KTVKLWNRNGQLLQTLTG-HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG 219
Query: 392 EEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQ--NKYVIRSCFGGL 449
               +  ++ S D +      + + + +W+  G+  +    TGHS   N    R      
Sbjct: 220 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL--TGHSSSVNGVAFRP----- 272
Query: 450 DGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
           DG  IAS S++  + +WN RN + ++ L+GHS +V  V+++P   + +ASASDD T+++W
Sbjct: 273 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPD-GQTIASASDDKTVKLW 330

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score =  115 bits (289), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 94/298 (31%), Positives = 147/298 (49%), Gaps = 14/298 (4%)
Query: 218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP 277
           L  H   V  V+FS NGE+LASSS+D    IW   +      + T+  H+  +S VAWS 
Sbjct: 25  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---FEKTISGHKLGISDVAWSS 81
Query: 278 DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM 337
           D   L++  + + LK+WDV +G C  T   H   V  C + P S  +V GS D    I+ 
Sbjct: 82  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Query: 338 CDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL--GTYAERVISEEH- 394
               G  +K       P V  +    DG  ++S   D   RI +   G   + +I +++ 
Sbjct: 142 VKT-GKCLKTLPAHSDP-VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 199
Query: 395 PITSLSVSVDCKNFIVNLNSQEIHMWDVA-GKWEKPFKYTGHSQNKYVIRSCFGGLDGTF 453
           P++ +  S + K  +       + +WD + GK  K   YTGH   KY I + F    G +
Sbjct: 200 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK--TYTGHKNEKYCIFANFSVTGGKW 257
Query: 454 IASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS--DDHTIRIW 509
           I SGSE++ +YIWN +  + ++ L GH+  V   + +P    ++ASA+  +D TI++W
Sbjct: 258 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLW 314

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score =  115 bits (289), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 94/298 (31%), Positives = 147/298 (49%), Gaps = 14/298 (4%)
Query: 218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP 277
           L  H   V  V+FS NGE+LASSS+D    IW   +      + T+  H+  +S VAWS 
Sbjct: 25  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---FEKTISGHKLGISDVAWSS 81
Query: 278 DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM 337
           D   L++  + + LK+WDV +G C  T   H   V  C + P S  +V GS D    I+ 
Sbjct: 82  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Query: 338 CDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL--GTYAERVISEEH- 394
               G  +K       P V  +    DG  ++S   D   RI +   G   + +I +++ 
Sbjct: 142 VKT-GKCLKTLPAHSDP-VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 199
Query: 395 PITSLSVSVDCKNFIVNLNSQEIHMWDVA-GKWEKPFKYTGHSQNKYVIRSCFGGLDGTF 453
           P++ +  S + K  +       + +WD + GK  K   YTGH   KY I + F    G +
Sbjct: 200 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK--TYTGHKNEKYCIFANFSVTGGKW 257
Query: 454 IASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS--DDHTIRIW 509
           I SGSE++ +YIWN +  + ++ L GH+  V   + +P    ++ASA+  +D TI++W
Sbjct: 258 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLW 314

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score =  115 bits (289), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 94/298 (31%), Positives = 147/298 (49%), Gaps = 14/298 (4%)
Query: 218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP 277
           L  H   V  V+FS NGE+LASSS+D    IW   +      + T+  H+  +S VAWS 
Sbjct: 19  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---FEKTISGHKLGISDVAWSS 75
Query: 278 DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM 337
           D   L++  + + LK+WDV +G C  T   H   V  C + P S  +V GS D    I+ 
Sbjct: 76  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 135
Query: 338 CDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL--GTYAERVISEEH- 394
               G  +K       P V  +    DG  ++S   D   RI +   G   + +I +++ 
Sbjct: 136 VKT-GKCLKTLPAHSDP-VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 193
Query: 395 PITSLSVSVDCKNFIVNLNSQEIHMWDVA-GKWEKPFKYTGHSQNKYVIRSCFGGLDGTF 453
           P++ +  S + K  +       + +WD + GK  K   YTGH   KY I + F    G +
Sbjct: 194 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK--TYTGHKNEKYCIFANFSVTGGKW 251
Query: 454 IASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS--DDHTIRIW 509
           I SGSE++ +YIWN +  + ++ L GH+  V   + +P    ++ASA+  +D TI++W
Sbjct: 252 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLW 308

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score =  115 bits (289), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 94/298 (31%), Positives = 147/298 (49%), Gaps = 14/298 (4%)
Query: 218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP 277
           L  H   V  V+FS NGE+LASSS+D    IW   +      + T+  H+  +S VAWS 
Sbjct: 20  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---FEKTISGHKLGISDVAWSS 76
Query: 278 DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM 337
           D   L++  + + LK+WDV +G C  T   H   V  C + P S  +V GS D    I+ 
Sbjct: 77  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 136
Query: 338 CDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL--GTYAERVISEEH- 394
               G  +K       P V  +    DG  ++S   D   RI +   G   + +I +++ 
Sbjct: 137 VKT-GKCLKTLPAHSDP-VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 194
Query: 395 PITSLSVSVDCKNFIVNLNSQEIHMWDVA-GKWEKPFKYTGHSQNKYVIRSCFGGLDGTF 453
           P++ +  S + K  +       + +WD + GK  K   YTGH   KY I + F    G +
Sbjct: 195 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK--TYTGHKNEKYCIFANFSVTGGKW 252
Query: 454 IASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS--DDHTIRIW 509
           I SGSE++ +YIWN +  + ++ L GH+  V   + +P    ++ASA+  +D TI++W
Sbjct: 253 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLW 309

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score =  115 bits (289), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 94/298 (31%), Positives = 147/298 (49%), Gaps = 14/298 (4%)
Query: 218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP 277
           L  H   V  V+FS NGE+LASSS+D    IW   +      + T+  H+  +S VAWS 
Sbjct: 19  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---FEKTISGHKLGISDVAWSS 75
Query: 278 DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM 337
           D   L++  + + LK+WDV +G C  T   H   V  C + P S  +V GS D    I+ 
Sbjct: 76  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 135
Query: 338 CDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL--GTYAERVISEEH- 394
               G  +K       P V  +    DG  ++S   D   RI +   G   + +I +++ 
Sbjct: 136 VKT-GKCLKTLPAHSDP-VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 193
Query: 395 PITSLSVSVDCKNFIVNLNSQEIHMWDVA-GKWEKPFKYTGHSQNKYVIRSCFGGLDGTF 453
           P++ +  S + K  +       + +WD + GK  K   YTGH   KY I + F    G +
Sbjct: 194 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK--TYTGHKNEKYCIFANFSVTGGKW 251
Query: 454 IASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS--DDHTIRIW 509
           I SGSE++ +YIWN +  + ++ L GH+  V   + +P    ++ASA+  +D TI++W
Sbjct: 252 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLW 308

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score =  115 bits (289), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 94/298 (31%), Positives = 147/298 (49%), Gaps = 14/298 (4%)
Query: 218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP 277
           L  H   V  V+FS NGE+LASSS+D    IW   +      + T+  H+  +S VAWS 
Sbjct: 25  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---FEKTISGHKLGISDVAWSS 81
Query: 278 DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM 337
           D   L++  + + LK+WDV +G C  T   H   V  C + P S  +V GS D    I+ 
Sbjct: 82  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Query: 338 CDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL--GTYAERVISEEH- 394
               G  +K       P V  +    DG  ++S   D   RI +   G   + +I +++ 
Sbjct: 142 VKT-GKCLKTLPAHSDP-VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 199
Query: 395 PITSLSVSVDCKNFIVNLNSQEIHMWDVA-GKWEKPFKYTGHSQNKYVIRSCFGGLDGTF 453
           P++ +  S + K  +       + +WD + GK  K   YTGH   KY I + F    G +
Sbjct: 200 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK--TYTGHKNEKYCIFANFSVTGGKW 257
Query: 454 IASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS--DDHTIRIW 509
           I SGSE++ +YIWN +  + ++ L GH+  V   + +P    ++ASA+  +D TI++W
Sbjct: 258 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLW 314

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score =  115 bits (289), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 94/298 (31%), Positives = 147/298 (49%), Gaps = 14/298 (4%)
Query: 218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP 277
           L  H   V  V+FS NGE+LASSS+D    IW   +      + T+  H+  +S VAWS 
Sbjct: 36  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---FEKTISGHKLGISDVAWSS 92
Query: 278 DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM 337
           D   L++  + + LK+WDV +G C  T   H   V  C + P S  +V GS D    I+ 
Sbjct: 93  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 152
Query: 338 CDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL--GTYAERVISEEH- 394
               G  +K       P V  +    DG  ++S   D   RI +   G   + +I +++ 
Sbjct: 153 VKT-GKCLKTLPAHSDP-VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 210
Query: 395 PITSLSVSVDCKNFIVNLNSQEIHMWDVA-GKWEKPFKYTGHSQNKYVIRSCFGGLDGTF 453
           P++ +  S + K  +       + +WD + GK  K   YTGH   KY I + F    G +
Sbjct: 211 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK--TYTGHKNEKYCIFANFSVTGGKW 268
Query: 454 IASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS--DDHTIRIW 509
           I SGSE++ +YIWN +  + ++ L GH+  V   + +P    ++ASA+  +D TI++W
Sbjct: 269 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLW 325

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score =  115 bits (289), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 94/298 (31%), Positives = 147/298 (49%), Gaps = 14/298 (4%)
Query: 218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP 277
           L  H   V  V+FS NGE+LASSS+D    IW   +      + T+  H+  +S VAWS 
Sbjct: 24  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---FEKTISGHKLGISDVAWSS 80
Query: 278 DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM 337
           D   L++  + + LK+WDV +G C  T   H   V  C + P S  +V GS D    I+ 
Sbjct: 81  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 140
Query: 338 CDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL--GTYAERVISEEH- 394
               G  +K       P V  +    DG  ++S   D   RI +   G   + +I +++ 
Sbjct: 141 VKT-GKCLKTLPAHSDP-VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 198
Query: 395 PITSLSVSVDCKNFIVNLNSQEIHMWDVA-GKWEKPFKYTGHSQNKYVIRSCFGGLDGTF 453
           P++ +  S + K  +       + +WD + GK  K   YTGH   KY I + F    G +
Sbjct: 199 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK--TYTGHKNEKYCIFANFSVTGGKW 256
Query: 454 IASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS--DDHTIRIW 509
           I SGSE++ +YIWN +  + ++ L GH+  V   + +P    ++ASA+  +D TI++W
Sbjct: 257 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLW 313

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score =  115 bits (289), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 94/298 (31%), Positives = 147/298 (49%), Gaps = 14/298 (4%)
Query: 218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP 277
           L  H   V  V+FS NGE+LASSS+D    IW   +      + T+  H+  +S VAWS 
Sbjct: 15  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---FEKTISGHKLGISDVAWSS 71
Query: 278 DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM 337
           D   L++  + + LK+WDV +G C  T   H   V  C + P S  +V GS D    I+ 
Sbjct: 72  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 131
Query: 338 CDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL--GTYAERVISEEH- 394
               G  +K       P V  +    DG  ++S   D   RI +   G   + +I +++ 
Sbjct: 132 VKT-GKCLKTLPAHSDP-VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 189
Query: 395 PITSLSVSVDCKNFIVNLNSQEIHMWDVA-GKWEKPFKYTGHSQNKYVIRSCFGGLDGTF 453
           P++ +  S + K  +       + +WD + GK  K   YTGH   KY I + F    G +
Sbjct: 190 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK--TYTGHKNEKYCIFANFSVTGGKW 247
Query: 454 IASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS--DDHTIRIW 509
           I SGSE++ +YIWN +  + ++ L GH+  V   + +P    ++ASA+  +D TI++W
Sbjct: 248 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLW 304

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score =  115 bits (289), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 94/298 (31%), Positives = 147/298 (49%), Gaps = 14/298 (4%)
Query: 218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP 277
           L  H   V  V+FS NGE+LASSS+D    IW   +      + T+  H+  +S VAWS 
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---FEKTISGHKLGISDVAWSS 78
Query: 278 DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM 337
           D   L++  + + LK+WDV +G C  T   H   V  C + P S  +V GS D    I+ 
Sbjct: 79  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 338 CDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL--GTYAERVISEEH- 394
               G  +K       P V  +    DG  ++S   D   RI +   G   + +I +++ 
Sbjct: 139 VKT-GMCLKTLPAHSDP-VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 395 PITSLSVSVDCKNFIVNLNSQEIHMWDVA-GKWEKPFKYTGHSQNKYVIRSCFGGLDGTF 453
           P++ +  S + K  +       + +WD + GK  K   YTGH   KY I + F    G +
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK--TYTGHKNEKYCIFANFSVTGGKW 254
Query: 454 IASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS--DDHTIRIW 509
           I SGSE++ +YIWN +  + ++ L GH+  V   + +P    ++ASA+  +D TI++W
Sbjct: 255 IVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLW 311

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score =  115 bits (289), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 94/298 (31%), Positives = 147/298 (49%), Gaps = 14/298 (4%)
Query: 218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP 277
           L  H   V  V+FS NGE+LASSS+D    IW   +      + T+  H+  +S VAWS 
Sbjct: 18  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---FEKTISGHKLGISDVAWSS 74
Query: 278 DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM 337
           D   L++  + + LK+WDV +G C  T   H   V  C + P S  +V GS D    I+ 
Sbjct: 75  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 134
Query: 338 CDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL--GTYAERVISEEH- 394
               G  +K       P V  +    DG  ++S   D   RI +   G   + +I +++ 
Sbjct: 135 VKT-GKCLKTLPAHSDP-VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 192
Query: 395 PITSLSVSVDCKNFIVNLNSQEIHMWDVA-GKWEKPFKYTGHSQNKYVIRSCFGGLDGTF 453
           P++ +  S + K  +       + +WD + GK  K   YTGH   KY I + F    G +
Sbjct: 193 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK--TYTGHKNEKYCIFANFSVTGGKW 250
Query: 454 IASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS--DDHTIRIW 509
           I SGSE++ +YIWN +  + ++ L GH+  V   + +P    ++ASA+  +D TI++W
Sbjct: 251 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLW 307

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score =  115 bits (289), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 94/298 (31%), Positives = 147/298 (49%), Gaps = 14/298 (4%)
Query: 218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP 277
           L  H   V  V+FS NGE+LASSS+D    IW   +      + T+  H+  +S VAWS 
Sbjct: 41  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---FEKTISGHKLGISDVAWSS 97
Query: 278 DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM 337
           D   L++  + + LK+WDV +G C  T   H   V  C + P S  +V GS D    I+ 
Sbjct: 98  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 157
Query: 338 CDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL--GTYAERVISEEH- 394
               G  +K       P V  +    DG  ++S   D   RI +   G   + +I +++ 
Sbjct: 158 VKT-GKCLKTLPAHSDP-VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 215
Query: 395 PITSLSVSVDCKNFIVNLNSQEIHMWDVA-GKWEKPFKYTGHSQNKYVIRSCFGGLDGTF 453
           P++ +  S + K  +       + +WD + GK  K   YTGH   KY I + F    G +
Sbjct: 216 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK--TYTGHKNEKYCIFANFSVTGGKW 273
Query: 454 IASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS--DDHTIRIW 509
           I SGSE++ +YIWN +  + ++ L GH+  V   + +P    ++ASA+  +D TI++W
Sbjct: 274 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLW 330

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score =  115 bits (288), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 94/298 (31%), Positives = 147/298 (49%), Gaps = 14/298 (4%)
Query: 218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP 277
           L  H   V  V+FS NGE+LASSS+D    IW   +      + T+  H+  +S VAWS 
Sbjct: 43  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---FEKTISGHKLGISDVAWSS 99
Query: 278 DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM 337
           D   L++  + + LK+WDV +G C  T   H   V  C + P S  +V GS D    I+ 
Sbjct: 100 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 159
Query: 338 CDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL--GTYAERVISEEH- 394
               G  +K       P V  +    DG  ++S   D   RI +   G   + +I +++ 
Sbjct: 160 VKT-GKCLKTLPAHSDP-VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 217
Query: 395 PITSLSVSVDCKNFIVNLNSQEIHMWDVA-GKWEKPFKYTGHSQNKYVIRSCFGGLDGTF 453
           P++ +  S + K  +       + +WD + GK  K   YTGH   KY I + F    G +
Sbjct: 218 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK--TYTGHKNEKYCIFANFSVTGGKW 275
Query: 454 IASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS--DDHTIRIW 509
           I SGSE++ +YIWN +  + ++ L GH+  V   + +P    ++ASA+  +D TI++W
Sbjct: 276 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLW 332

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score =  115 bits (288), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 93/298 (31%), Positives = 147/298 (49%), Gaps = 14/298 (4%)
Query: 218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP 277
           L  H   V  V+FS NGE+LA+SS+D    IW   +      + T+  H+  +S VAWS 
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGK---FEKTISGHKLGISDVAWSS 78
Query: 278 DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM 337
           D   L++  + + LK+WDV +G C  T   H   V  C + P S  +V GS D    I+ 
Sbjct: 79  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 338 CDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL--GTYAERVISEEH- 394
               G  +K       P V  +    DG  ++S   D   RI +   G   + +I +++ 
Sbjct: 139 VKT-GKCLKTLPAHSDP-VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 395 PITSLSVSVDCKNFIVNLNSQEIHMWDVA-GKWEKPFKYTGHSQNKYVIRSCFGGLDGTF 453
           P++ +  S + K  +       + +WD + GK  K   YTGH   KY I + F    G +
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT--YTGHKNEKYCIFANFSVTGGKW 254
Query: 454 IASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS--DDHTIRIW 509
           I SGSE++ +YIWN +  + ++ L GH+  V   + +P    ++ASA+  +D TI++W
Sbjct: 255 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLW 311

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score =  113 bits (283), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/298 (31%), Positives = 147/298 (49%), Gaps = 14/298 (4%)
Query: 218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP 277
           L  H   V  V+FS NGE+LASSS+D    IW   +      + T+  H+  +S VAWS 
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---FEKTISGHKLGISDVAWSS 78
Query: 278 DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM 337
           D   L++  + + LK+WDV +G C  T   H   V  C + P S  +V GS D    I+ 
Sbjct: 79  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 338 CDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL--GTYAERVISEEH- 394
               G  +K       P V  +    DG  ++S   D   RI +   G   + +I +++ 
Sbjct: 139 VKT-GKCLKTLPAHSDP-VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 395 PITSLSVSVDCKNFIVNLNSQEIHMWDVA-GKWEKPFKYTGHSQNKYVIRSCFGGLDGTF 453
           P++ +  S + K  +       + +WD + GK  K   YTGH   KY I + F    G +
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT--YTGHKNEKYCIFANFSVTGGKW 254
Query: 454 IASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS--DDHTIRIW 509
           I SGSE++ +YIWN +  + ++ L GH+  V   + +P    ++ASA+  +D TI+++
Sbjct: 255 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLY 311

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score =  113 bits (282), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/298 (31%), Positives = 147/298 (49%), Gaps = 14/298 (4%)
Query: 218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP 277
           L  H   V  V+FS NGE+LASSS+D    IW   +      + T+  H+  +S VAWS 
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---FEKTISGHKLGISDVAWSS 78
Query: 278 DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM 337
           D   L++  + + LK+WDV +G C  T   H   V  C + P S  +V GS D    I+ 
Sbjct: 79  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 338 CDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL--GTYAERVISEEH- 394
               G  +K       P V  +    DG  ++S   D   RI +   G   + +I +++ 
Sbjct: 139 VKT-GKCLKTLPAHSDP-VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 395 PITSLSVSVDCKNFIVNLNSQEIHMWDVA-GKWEKPFKYTGHSQNKYVIRSCFGGLDGTF 453
           P++ +  S + K  +       + +WD + GK  K   YTGH   KY I + F    G +
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT--YTGHKNEKYCIFANFSVTGGKW 254
Query: 454 IASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS--DDHTIRIW 509
           I SGSE++ +YIWN +  + ++ L GH+  V   + +P    ++ASA+  +D TI+++
Sbjct: 255 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLF 311

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 120/306 (39%), Gaps = 42/306 (13%)
Query: 217 ILTE-HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAW 275
           +L+E H+  V  V +S  G YLAS+S D +  IWK  +D       TL  H+N V  VAW
Sbjct: 55  VLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQD-DFECVTTLEGHENEVKSVAW 113
Query: 276 SPDDTKLLTCGNAEVLKLWDVETGI---CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTE 332
           +P    L TC   + + +W+V+      C      H   V    W P  + L   S D  
Sbjct: 114 APSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDT 173
Query: 333 KGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISE 392
             ++  + D     A        V  LA  P G+ L S   D+ +RI             
Sbjct: 174 VKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW------------ 221
Query: 393 EHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTG-HSQNKYVIRSCFGGLDG 451
                        + ++   N Q +        W+     +G HS+  Y I  C   L G
Sbjct: 222 -------------RQYLPG-NEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWC--QLTG 265
Query: 452 TFIASGSENSQIYIWNRRNSKPIE--------ILSGHSMTVNCVSWNPKRPKMLASASDD 503
               +  +++        NS P +        +   HS  VNCV+WNPK P +LAS SDD
Sbjct: 266 ALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDD 325
Query: 504 HTIRIW 509
             +  W
Sbjct: 326 GEVAFW 331

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 139/308 (45%), Gaps = 23/308 (7%)
Query: 217 ILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWS 276
           ++  H + V+   FS +G+ +AS  +D +  ++K     KL     +++H++ V   A+S
Sbjct: 617 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFS 673
Query: 277 PDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIF 336
            DD+ + TC   + +K+WD  TG   HT+ +H   V+ C +   S  L+  +   +  + 
Sbjct: 674 SDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLK 733
Query: 337 MCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAER-------- 388
           + D +  E +         V     +PD E L S  +D  +R+ ++ +  ER        
Sbjct: 734 LWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRF 793
Query: 389 VISEEHPITSLSVSVDCKNF------IVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVI 442
            +S E P   + V V C ++      I+     ++ ++D+         +TGH      I
Sbjct: 794 FLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHST---I 850
Query: 443 RSC-FGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS 501
           + C F   D   + + S+   + +WN  +   +    GH   V+ V ++P     L +AS
Sbjct: 851 QYCDFSPYDHLAVIALSQYC-VELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFL-TAS 908
Query: 502 DDHTIRIW 509
           DD TIR+W
Sbjct: 909 DDQTIRVW 916

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 139/308 (45%), Gaps = 23/308 (7%)
Query: 217 ILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWS 276
           ++  H + V+   FS +G+ +AS  +D +  ++K     KL     +++H++ V   A+S
Sbjct: 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFS 666
Query: 277 PDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIF 336
            DD+ + TC   + +K+WD  TG   HT+ +H   V+ C +   S  L+  +   +  + 
Sbjct: 667 SDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLK 726
Query: 337 MCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAER-------- 388
           + D +  E +         V     +PD E L S  +D  +R+ ++ +  ER        
Sbjct: 727 LWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRF 786
Query: 389 VISEEHPITSLSVSVDCKNF------IVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVI 442
            +S E P   + V V C ++      I+     ++ ++D+         +TGH      I
Sbjct: 787 FLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHST---I 843
Query: 443 RSC-FGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS 501
           + C F   D   + + S+   + +WN  +   +    GH   V+ V ++P     L +AS
Sbjct: 844 QYCDFSPYDHLAVIALSQYC-VELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFL-TAS 901
Query: 502 DDHTIRIW 509
           DD TIR+W
Sbjct: 902 DDQTIRVW 909

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 75/335 (22%), Positives = 145/335 (43%), Gaps = 56/335 (16%)
Query: 220 EHKNEVWFVQFSNNGEYLASSSSDCS--------AIIWKVLEDSKLTL-KHTLRSHQNP- 269
           +H + V  V+FSN+GEYLA+  +  +        +++ ++ +DS        L +  +P 
Sbjct: 62  DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPS 121
Query: 270 ----VSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLV 325
               +  V +SPD   L T     ++++WD+E          H   + S  +FP   +LV
Sbjct: 122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLV 181
Query: 326 CGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLD----LAVTP-DGENLISVLSDKDIRIL 380
            GS D    I+       +++  + +    + D    +AV+P DG+ + +   D+ +R+ 
Sbjct: 182 SGSGDRTVRIW-------DLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVW 234
Query: 381 N--LGTYAERVISE-------EHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKP-- 429
           +   G   ER+ SE       +  + S+  + D ++ +     + + +W++     K   
Sbjct: 235 DSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDS 294
Query: 430 ---------FKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGH 480
                      Y GH   K  + S     +  +I SGS++  +  W++++  P+ +L GH
Sbjct: 295 KTPNSGTCEVTYIGH---KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH 351
Query: 481 SMTV------NCVSWNPKRPKMLASASDDHTIRIW 509
             +V      N  S  P+   + A+ S D   RIW
Sbjct: 352 RNSVISVAVANGSSLGPEY-NVFATGSGDCKARIW 385

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 77/176 (43%), Gaps = 7/176 (3%)
Query: 209 QIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVL--EDSKLTLKHTLRSH 266
           ++    V  L+ H  EV  ++++ +G +LAS  +D    +W     E   + L+ T   H
Sbjct: 137 RVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ-TFTQH 195
Query: 267 QNPVSFVAWSPDDTKLLTCGNAEV---LKLWDVETGICKHTFGDHGFIVSSCAWFPDSKR 323
           Q  V  VAW P  + +L  G       +++W+V +G C      H   V S  W P  K 
Sbjct: 196 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKE 254
Query: 324 LVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRI 379
           L+ G    +  + +         A       +VL L ++PDG  + S  +D+ +R+
Sbjct: 255 LISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRL 310

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 77/176 (43%), Gaps = 7/176 (3%)
Query: 209 QIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVL--EDSKLTLKHTLRSH 266
           ++    V  L+ H  EV  ++++ +G +LAS  +D    +W     E   + L+ T   H
Sbjct: 228 RVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ-TFTQH 286
Query: 267 QNPVSFVAWSPDDTKLLTCGNA---EVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKR 323
           Q  V  VAW P  + +L  G       +++W+V +G C      H   V S  W P  K 
Sbjct: 287 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCSILWSPHYKE 345
Query: 324 LVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRI 379
           L+ G    +  + +         A       +VL L ++PDG  + S  +D+ +R+
Sbjct: 346 LISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRL 401

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 77/176 (43%), Gaps = 7/176 (3%)
Query: 209 QIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVL--EDSKLTLKHTLRSH 266
           ++    V  L+ H  EV  ++++ +G +LAS  +D    +W     E   + L+ T   H
Sbjct: 217 RVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ-TFTQH 275
Query: 267 QNPVSFVAWSPDDTKLLTCGNA---EVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKR 323
           Q  V  VAW P  + +L  G       +++W+V +G C      H   V S  W P  K 
Sbjct: 276 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCSILWSPHYKE 334
Query: 324 LVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRI 379
           L+ G    +  + +         A       +VL L ++PDG  + S  +D+ +R+
Sbjct: 335 LISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRL 390

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 70/315 (22%), Positives = 125/315 (39%), Gaps = 34/315 (10%)
Query: 218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP 277
           L+ H++ V  V F      + S+S D +  +W          + TL+ H + V  +++  
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD---FERTLKGHTDSVQDISFDH 160
Query: 278 DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM 337
               L +C     +KLWD +   C  T   H   VSS +  P+   +V  S D  K I M
Sbjct: 161 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRD--KTIKM 218
Query: 338 CDCD-GNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEH-- 394
            +   G  +K + G R   V  +    DG  + S  +D+ +R+  + T   +    EH  
Sbjct: 219 WEVQTGYCVKTFTGHR-EWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRH 277
Query: 395 --------PITSLSVSVDCKN------------FIVNLNSQEIHMWDVAGKWEKPFKYTG 434
                   P +S S   +                +     + I MWDV+          G
Sbjct: 278 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG-MCLMTLVG 336
Query: 435 HSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRP 494
           H      +R       G FI S +++  + +W+ +N + ++ L+ H   V  + ++   P
Sbjct: 337 HDN---WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAP 393
Query: 495 KMLASASDDHTIRIW 509
             + + S D T+++W
Sbjct: 394 -YVVTGSVDQTVKVW 407

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 89/197 (45%), Gaps = 17/197 (8%)
Query: 209 QIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTL-KHTLRSHQ 267
           +I    +  L  H +EV  + + ++G  LAS  +D    IW    D++ ++ K T  +H 
Sbjct: 204 RIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIW----DARSSIPKFTKTNHN 259
Query: 268 NPVSFVAWSPDDTKLLTCGNAEV---LKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRL 324
             V  VAW P  + LL  G   +   +  W+  TG   +T  D G  V+S  W P SK +
Sbjct: 260 AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV-DAGSQVTSLIWSPHSKEI 318
Query: 325 VC--GSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL 382
           +   G  D    I+     G   +        +VL  A++PDG  L +  SD++++   +
Sbjct: 319 MSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRV 378
Query: 383 --GTYAERVISEEHPIT 397
             G + +R I    PIT
Sbjct: 379 YDGDHVKRPI----PIT 391

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 118/300 (39%), Gaps = 69/300 (23%)
Query: 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVA 274
           ++ L  H   VW  Q  +N   + S S+D +  +W       +   HTL  H + V  + 
Sbjct: 152 LRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECI---HTLYGHTSTVRCM- 205
Query: 275 WSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKG 334
               + ++++      L++WD+ETG C H    H   V    +  D +R+V G+ D    
Sbjct: 206 -HLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYD---- 258
Query: 335 IFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEH 394
            FM       +K W              P+ E  +  L     R+ +L      V+S   
Sbjct: 259 -FM-------VKVW-------------DPETETCLHTLQGHTNRVYSLQFDGIHVVS--- 294
Query: 395 PITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLD--GT 452
              SL  S              I +WDV          TGH       +S   G++    
Sbjct: 295 --GSLDTS--------------IRVWDVETG-NCIHTLTGH-------QSLTSGMELKDN 330
Query: 453 FIASGSENSQIYIWNRRNSKPIEILSG---HSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
            + SG+ +S + IW+ +  + ++ L G   H   V C+ +N      + ++SDD T+++W
Sbjct: 331 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN---FVITSSDDGTVKLW 387

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 111/298 (37%), Gaps = 69/298 (23%)
Query: 226 WFVQFSNNGEY---LASSSSDCSAIIWKVLEDSK--LTLKHTLRSHQNPVSFVAWSPDDT 280
           W  Q +   ++   + S+S D + I+WK+  D       +  LR H + VS V  S D  
Sbjct: 40  WVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ 99
Query: 281 KLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDC 340
             L+      L+LWD+ TG     F  H   V S A+  D++++V GS D          
Sbjct: 100 FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD---------- 149
Query: 341 DGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLS 400
               IK W                                 LG     V  E H     S
Sbjct: 150 --KTIKLWN-------------------------------TLGVCKYTVQDESH-----S 171
Query: 401 VSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKY---------TGHSQNKYVIRSCFGGLDG 451
             V C  F  N ++  I    V+  W+K  K          T H  +   + +     DG
Sbjct: 172 EWVSCVRFSPNSSNPII----VSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDG 227
Query: 452 TFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
           +  ASG ++ Q  +W+    K +  L G  + +N + ++P R  + A+     +I+IW
Sbjct: 228 SLCASGGKDGQAMLWDLNEGKHLYTLDGGDI-INALCFSPNRYWLCAATGP--SIKIW 282

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 111/298 (37%), Gaps = 69/298 (23%)
Query: 226 WFVQFSNNGEY---LASSSSDCSAIIWKVLEDSK--LTLKHTLRSHQNPVSFVAWSPDDT 280
           W  Q +   ++   + S+S D + I+WK+  D       +  LR H + VS V  S D  
Sbjct: 17  WVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ 76
Query: 281 KLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDC 340
             L+      L+LWD+ TG     F  H   V S A+  D++++V GS D          
Sbjct: 77  FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD---------- 126
Query: 341 DGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLS 400
               IK W                                 LG     V  E H     S
Sbjct: 127 --KTIKLWN-------------------------------TLGVCKYTVQDESH-----S 148
Query: 401 VSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKY---------TGHSQNKYVIRSCFGGLDG 451
             V C  F  N ++  I    V+  W+K  K          T H  +   + +     DG
Sbjct: 149 EWVSCVRFSPNSSNPII----VSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDG 204
Query: 452 TFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
           +  ASG ++ Q  +W+    K +  L G  + +N + ++P R  + A+     +I+IW
Sbjct: 205 SLCASGGKDGQAMLWDLNEGKHLYTLDGGDI-INALCFSPNRYWLCAATGP--SIKIW 259

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 114/258 (44%), Gaps = 17/258 (6%)
Query: 218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP 277
           L  H   V  V  SNNG +  S+S D S  +W  L++ +   K     H   V  VA+SP
Sbjct: 63  LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWN-LQNGQCQYK--FLGHTKDVLSVAFSP 119
Query: 278 DDTKLLTCGNAEVLKLWDVETGICKHTF--GDHGFIVSSCAWFP--DSKRLVCGSSDTEK 333
           D+ ++++ G    L++W+V+ G C HT   G H   VS   + P  D+  +V G  D   
Sbjct: 120 DNRQIVSGGRDNALRVWNVK-GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLV 178
Query: 334 GIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERV--IS 391
            ++     G  +   +G     V  + V+PDG    S   D   R+ +L T  E +  ++
Sbjct: 179 KVWDL-ATGRLVTDLKG-HTNYVTSVTVSPDGSLCASSDKDGVARLWDL-TKGEALSEMA 235
Query: 392 EEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFG---G 448
              PI  +  S + + ++     + I ++D+  K         H  +K ++  C      
Sbjct: 236 AGAPINQICFSPN-RYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWS 294
Query: 449 LDGTFIASGSENSQIYIW 466
            DG+ + SG  ++ I +W
Sbjct: 295 ADGSTLYSGYTDNVIRVW 312

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 453 FIASGSENSQIYIWNRRNSKPIE-ILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGP 511
           ++ SGS++  + +WN  N+  +E    GH   V CV++NPK P   AS   D T+++W  
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 512 CQSS 515
            QS+
Sbjct: 171 GQST 174

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 453 FIASGSENSQIYIWNRRNSKPIE-ILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGP 511
           ++ SGS++  + +WN  N+  +E    GH   V CV++NPK P   AS   D T+++W  
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 512 CQSS 515
            QS+
Sbjct: 171 GQST 174

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/308 (18%), Positives = 122/308 (39%), Gaps = 17/308 (5%)
Query: 209 QIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQN 268
           +I   T + L  H  +++ + +  +   L S+S D   IIW     +K+   H +    +
Sbjct: 53  RIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKV---HAIPLRSS 109
Query: 269 PVSFVAWSPDDTKLLTCGNAEVLKLWDVETG-----ICKHTFGDHGFIVSSCAWFPDSKR 323
            V   A++P    +   G   +  +++++T      + +   G  G++  SC  F D  +
Sbjct: 110 WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYL--SCCRFLDDNQ 167
Query: 324 LVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL- 382
           +V  S DT   ++  D +  +           V+ L++ PD    +S   D   ++ ++ 
Sbjct: 168 IVTSSGDTTCALW--DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 225
Query: 383 -GTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYV 441
            G   +     E  I ++    +   F    +     ++D+  + ++      H      
Sbjct: 226 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL--RADQELMTYSHDNIICG 283
Query: 442 IRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS 501
           I S      G  + +G ++    +W+   +    +L+GH   V+C+         +A+ S
Sbjct: 284 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD-GMAVATGS 342
Query: 502 DDHTIRIW 509
            D  ++IW
Sbjct: 343 WDSFLKIW 350

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/308 (18%), Positives = 122/308 (39%), Gaps = 17/308 (5%)
Query: 209 QIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQN 268
           +I   T + L  H  +++ + +  +   L S+S D   IIW     +K+   H +    +
Sbjct: 42  RIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKV---HAIPLRSS 98
Query: 269 PVSFVAWSPDDTKLLTCGNAEVLKLWDVETG-----ICKHTFGDHGFIVSSCAWFPDSKR 323
            V   A++P    +   G   +  +++++T      + +   G  G++  SC  F D  +
Sbjct: 99  WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYL--SCCRFLDDNQ 156
Query: 324 LVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL- 382
           +V  S DT   ++  D +  +           V+ L++ PD    +S   D   ++ ++ 
Sbjct: 157 IVTSSGDTTCALW--DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 383 -GTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYV 441
            G   +     E  I ++    +   F    +     ++D+  + ++      H      
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL--RADQELMTYSHDNIICG 272
Query: 442 IRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS 501
           I S      G  + +G ++    +W+   +    +L+GH   V+C+         +A+ S
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD-GMAVATGS 331
Query: 502 DDHTIRIW 509
            D  ++IW
Sbjct: 332 WDSFLKIW 339

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/308 (18%), Positives = 122/308 (39%), Gaps = 17/308 (5%)
Query: 209 QIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQN 268
           +I   T + L  H  +++ + +  +   L S+S D   IIW     +K+   H +    +
Sbjct: 42  RIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKV---HAIPLRSS 98
Query: 269 PVSFVAWSPDDTKLLTCGNAEVLKLWDVETG-----ICKHTFGDHGFIVSSCAWFPDSKR 323
            V   A++P    +   G   +  +++++T      + +   G  G++  SC  F D  +
Sbjct: 99  WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYL--SCCRFLDDNQ 156
Query: 324 LVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL- 382
           +V  S DT   ++  D +  +           V+ L++ PD    +S   D   ++ ++ 
Sbjct: 157 IVTSSGDTTCALW--DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 383 -GTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYV 441
            G   +     E  I ++    +   F    +     ++D+  + ++      H      
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL--RADQELMTYSHDNIICG 272
Query: 442 IRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS 501
           I S      G  + +G ++    +W+   +    +L+GH   V+C+         +A+ S
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD-GMAVATGS 331
Query: 502 DDHTIRIW 509
            D  ++IW
Sbjct: 332 WDSFLKIW 339

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/308 (18%), Positives = 122/308 (39%), Gaps = 17/308 (5%)
Query: 209 QIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQN 268
           +I   T + L  H  +++ + +  +   L S+S D   IIW     +K+   H +    +
Sbjct: 42  RIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKV---HAIPLRSS 98
Query: 269 PVSFVAWSPDDTKLLTCGNAEVLKLWDVETG-----ICKHTFGDHGFIVSSCAWFPDSKR 323
            V   A++P    +   G   +  +++++T      + +   G  G++  SC  F D  +
Sbjct: 99  WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYL--SCCRFLDDNQ 156
Query: 324 LVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL- 382
           +V  S DT   ++  D +  +           V+ L++ PD    +S   D   ++ ++ 
Sbjct: 157 IVTSSGDTTCALW--DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 383 -GTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYV 441
            G   +     E  I ++    +   F    +     ++D+  + ++      H      
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL--RADQELMTYSHDNIICG 272
Query: 442 IRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS 501
           I S      G  + +G ++    +W+   +    +L+GH   V+C+         +A+ S
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD-GMAVATGS 331
Query: 502 DDHTIRIW 509
            D  ++IW
Sbjct: 332 WDSFLKIW 339

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/308 (18%), Positives = 122/308 (39%), Gaps = 17/308 (5%)
Query: 209 QIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQN 268
           +I   T + L  H  +++ + +  +   L S+S D   IIW     +K+   H +    +
Sbjct: 42  RIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKV---HAIPLRSS 98
Query: 269 PVSFVAWSPDDTKLLTCGNAEVLKLWDVETG-----ICKHTFGDHGFIVSSCAWFPDSKR 323
            V   A++P    +   G   +  +++++T      + +   G  G++  SC  F D  +
Sbjct: 99  WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYL--SCCRFLDDNQ 156
Query: 324 LVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL- 382
           +V  S DT   ++  D +  +           V+ L++ PD    +S   D   ++ ++ 
Sbjct: 157 IVTSSGDTTCALW--DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 383 -GTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYV 441
            G   +     E  I ++    +   F    +     ++D+  + ++      H      
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL--RADQELMTYSHDNIICG 272
Query: 442 IRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS 501
           I S      G  + +G ++    +W+   +    +L+GH   V+C+         +A+ S
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD-GMAVATGS 331
Query: 502 DDHTIRIW 509
            D  ++IW
Sbjct: 332 WDSFLKIW 339

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 442 IRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIE-ILSGHSMTVNCVSWNPKRPKMLASA 500
           IRS        ++ SGS++  + +WN  N+  +E    GH   V CV++NPK P   AS 
Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159
Query: 501 SDDHTIRIWGPCQSS 515
             D T+++W   QS+
Sbjct: 160 CLDRTVKVWSLGQST 174

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 442 IRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIE-ILSGHSMTVNCVSWNPKRPKMLASA 500
           IRS        ++ SGS++  + +WN  N+  +E    GH   V CV++NPK P   AS 
Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159
Query: 501 SDDHTIRIWGPCQSS 515
             D T+++W   QS+
Sbjct: 160 CLDRTVKVWSLGQST 174

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 48/105 (45%), Gaps = 10/105 (9%)
Query: 232 NNGEYLASSSSDCSAIIWKVLEDSKLTLKH-----TLRSHQNPVSFVAWSPDDTK-LLTC 285
           +N   +AS S DC+ ++W++  D  L L       TL  H   V  VAW P     LL+ 
Sbjct: 92  HNDNVIASGSEDCTVMVWEI-PDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSA 150
Query: 286 GNAEVLKLWDVETGICKHTFGD--HGFIVSSCAWFPDSKRLVCGS 328
           G   V+ +WDV TG    T G   H   + S  W  D   L+C S
Sbjct: 151 GXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGA-LICTS 194

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 454 IASGSENSQIYIWNRRNS-------KPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTI 506
           IASGSE+  + +W   +        +P+  L GH+  V  V+W+P    +L SA  D+ I
Sbjct: 97  IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVI 156
Query: 507 RIW 509
            +W
Sbjct: 157 LVW 159

>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane Length = 316

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 123/311 (39%), Gaps = 51/311 (16%)
Query: 219 TEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPD 278
           T H++ +   Q    G  LA+ SSD S  I+ V    ++ +   LR H+ PV  VAW+  
Sbjct: 10  TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIA-DLRGHEGPVWQVAWAHP 68
Query: 279 --DTKLLTCGNAEVLKLWDVETGICK--HTFGDHGFIVSSCAWFPDSKRLV--CGSSDTE 332
                L +C     + +W  E G  +  H    H   V+S  W P    L+  CGSSD  
Sbjct: 69  MYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGA 128
Query: 333 KGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISE 392
             +                       L  T +G+  +  +++      N  ++A  V+  
Sbjct: 129 ISL-----------------------LTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPG 165
Query: 393 ---EHP------ITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQ-NKYVI 442
              +HP            S  C N I     +E       G+W++  K   HS   + V 
Sbjct: 166 SLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEE------DGQWKEEQKLEAHSDWVRDVA 219
Query: 443 RSCFGGLDGTFIASGSENSQIYIWN----RRNSKPIEILSGHSMTVNCVSWNPKRPKMLA 498
            +   GL  + IAS S++ +++IW       N+   ++L   +  V  VSW+     +LA
Sbjct: 220 WAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSIT-ANILA 278
Query: 499 SASDDHTIRIW 509
            +  D+ + +W
Sbjct: 279 VSGGDNKVTLW 289

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 432 YTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRN---SKPIEILSGHSMTVNCVS 488
           +TGH+    V    +  L  +   S +++ ++ IW+ RN   SKP   +  H+  VNC+S
Sbjct: 227 FTGHT--AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLS 284
Query: 489 WNPKRPKMLASASDDHTIRIW 509
           +NP    +LA+ S D T+ +W
Sbjct: 285 FNPYSEFILATGSADKTVALW 305

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 3/124 (2%)
Query: 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVA 274
           +  L  H   +  + FS + + L ++S D    I+ V       L  TL  H + V  VA
Sbjct: 199 LHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDV---QHANLAGTLSGHASWVLNVA 255
Query: 275 WSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKG 334
           + PDDT  ++  + + +K+WDV T  C HTF DH   V    +  +  ++V    D E  
Sbjct: 256 FCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIH 315
Query: 335 IFMC 338
           I+ C
Sbjct: 316 IYDC 319

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 102/277 (36%), Gaps = 55/277 (19%)
Query: 221 HKNEVWFVQFSNN----GEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWS 276
           H + +W V +  N     E + + S D    +WK   D +L L+ +L  HQ  V  V  S
Sbjct: 31  HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWK-WRDERLDLQWSLEGHQLGVVSVDIS 89
Query: 277 PDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIF 336
                  +      ++LWD+E G    +         + A+ PDS+ L  G+   +  IF
Sbjct: 90  HTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIF 149
Query: 337 MCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEH-- 394
             +    E      TR   +L +A +PDG+ L S   D  I I ++ T       E H  
Sbjct: 150 GVESGKKEYSL--DTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAM 207
Query: 395 PITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFI 454
           PI SL+ S                                               D   +
Sbjct: 208 PIRSLTFSP----------------------------------------------DSQLL 221
Query: 455 ASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNP 491
            + S++  I I++ +++     LSGH+  V  V++ P
Sbjct: 222 VTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCP 258

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 74/139 (53%), Gaps = 9/139 (6%)
Query: 374 DKDIRILNLGTYAERVISEEHPITS--LSVSVDCKNFIVNLNSQEIHMWDV-AGKWEKPF 430
           D  IR+ +L    +    +  P+ +  L+ S D +      +  +++++ V +GK E   
Sbjct: 101 DAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKE--- 157
Query: 431 KYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWN 490
            Y+  ++ K+++   +   DG ++ASG+ +  I I++    K +  L GH+M +  ++++
Sbjct: 158 -YSLDTRGKFILSIAYSP-DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFS 215
Query: 491 PKRPKMLASASDDHTIRIW 509
           P   ++L +ASDD  I+I+
Sbjct: 216 PDS-QLLVTASDDGYIKIY 233

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 432 YTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRN---SKPIEILSGHSMTVNCVS 488
           +TGH+    V    +  L  +   S +++ ++ IW+ RN   SKP   +  H+  VNC+S
Sbjct: 229 FTGHT--AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLS 286
Query: 489 WNPKRPKMLASASDDHTIRIW 509
           +NP    +LA+ S D T+ +W
Sbjct: 287 FNPYSEFILATGSADKTVALW 307

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 72/158 (45%), Gaps = 6/158 (3%)
Query: 356 VLDLAVTPDGENLISVLSDKDIRILNL--GTYAERVISEEHPITSLSVSVDCKNFIVNLN 413
           V D+ ++ DG+  +S   D ++R+ +L  G    R +     + S++ S+D +  +    
Sbjct: 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR 492
Query: 414 SQEIHMWDVAGKWEKPFKYTGHSQNKYV--IRSCFGGLDGTFIASGSENSQIYIWNRRNS 471
            + I +W+  G+ +      G     +V  +R     L  T I S S +  + +WN  N 
Sbjct: 493 DRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPT-IVSASWDKTVKVWNLSNC 551
Query: 472 KPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
           K    L+GH+  V+ V+ +P    + AS   D  + +W
Sbjct: 552 KLRSTLAGHTGYVSTVAVSPDG-SLCASGGKDGVVLLW 588

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/267 (22%), Positives = 104/267 (38%), Gaps = 44/267 (16%)
Query: 237 LASSSSDCSAIIWKVL-EDSKLTLK-HTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLW 294
           L S+S D + I WK+  +D K  +   + + H + V     + D    L+    + L+LW
Sbjct: 33  LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 295 DVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIP 354
           DV TG     F  H   V S      +  ++ GS D              IK W      
Sbjct: 93  DVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD------------KTIKVW------ 134
Query: 355 KVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNS 414
                  T  G+ L ++L   D             +S+   + +     D    I   N 
Sbjct: 135 -------TIKGQCLATLLGHNDW------------VSQVRVVPNEKADDDSVTIISAGND 175
Query: 415 QEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPI 474
           + +  W++  +++    + GH+ N   I +     DGT IAS  ++ +I +WN    K +
Sbjct: 176 KMVKAWNL-NQFQIEADFIGHNSN---INTLTASPDGTLIASAGKDGEIMLWNLAAKKAM 231
Query: 475 EILSGHSMTVNCVSWNPKRPKMLASAS 501
             LS     V  ++++P R  + A+ +
Sbjct: 232 YTLSAQD-EVFSLAFSPNRYWLAAATA 257

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/254 (18%), Positives = 92/254 (36%), Gaps = 41/254 (16%)
Query: 257 LTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCA 316
           +  + TL+ H N V  + W  D  ++++      + +WD  T   +H        V +CA
Sbjct: 54  MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACA 113
Query: 317 WFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKD 376
           + P    + CG  D +  ++    D NE                                
Sbjct: 114 YAPSGCAIACGGLDNKCSVYPLTFDKNE-------------------------------- 141
Query: 377 IRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDV-AGKWEKPFKYTGH 435
               N+    + V    + +++ S +      +         +WDV +G+  + F   GH
Sbjct: 142 ----NMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFH--GH 195
Query: 436 SQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPK 495
             +   +         TF++ G +   + +W+ R+ + ++    H   VN V + P    
Sbjct: 196 GADVLCLDLAPSETGNTFVSGGCDKKAM-VWDMRSGQCVQAFETHESDVNSVRYYPS-GD 253
Query: 496 MLASASDDHTIRIW 509
             AS SDD T R++
Sbjct: 254 AFASGSDDATCRLY 267

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/267 (22%), Positives = 104/267 (38%), Gaps = 44/267 (16%)
Query: 237 LASSSSDCSAIIWKVL-EDSKLTLK-HTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLW 294
           L S+S D + I WK+  +D K  +   + + H + V     + D    L+    + L+LW
Sbjct: 33  LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 295 DVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIP 354
           DV TG     F  H   V S      +  ++ GS D              IK W      
Sbjct: 93  DVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD------------KTIKVW------ 134
Query: 355 KVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNS 414
                  T  G+ L ++L   D             +S+   + +     D    I   N 
Sbjct: 135 -------TIKGQCLATLLGHNDW------------VSQVRVVPNEKADDDSVTIISAGND 175
Query: 415 QEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPI 474
           + +  W++  +++    + GH+ N   I +     DGT IAS  ++ +I +WN    K +
Sbjct: 176 KMVKAWNL-NQFQIEADFIGHNSN---INTLTASPDGTLIASAGKDGEIMLWNLAAKKAM 231
Query: 475 EILSGHSMTVNCVSWNPKRPKMLASAS 501
             LS     V  ++++P R  + A+ +
Sbjct: 232 YTLSAQD-EVFSLAFSPNRYWLAAATA 257

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 48/105 (45%), Gaps = 10/105 (9%)
Query: 232 NNGEYLASSSSDCSAIIWKVLEDSKLTLKH-----TLRSHQNPVSFVAWSPDDTK-LLTC 285
           +N   +AS S DC+ ++W++  D  L L       TL  H   V  VAW P     LL+ 
Sbjct: 92  HNDNVIASGSEDCTVMVWEI-PDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSA 150
Query: 286 GNAEVLKLWDVETGICKHTFGD--HGFIVSSCAWFPDSKRLVCGS 328
           G   V+ +WDV TG    T G   H   + S  W  D   L+C S
Sbjct: 151 GCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGA-LICTS 194

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/267 (22%), Positives = 104/267 (38%), Gaps = 44/267 (16%)
Query: 237 LASSSSDCSAIIWKVL-EDSKLTLK-HTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLW 294
           L S+S D + I WK+  +D K  +   + + H + V     + D    L+    + L+LW
Sbjct: 33  LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 295 DVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIP 354
           DV TG     F  H   V S      +  ++ GS D              IK W      
Sbjct: 93  DVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD------------KTIKVW------ 134
Query: 355 KVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNS 414
                  T  G+ L ++L   D             +S+   + +     D    I   N 
Sbjct: 135 -------TIKGQCLATLLGHNDW------------VSQVRVVPNEKADDDSVTIISAGND 175
Query: 415 QEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPI 474
           + +  W++  +++    + GH+ N   I +     DGT IAS  ++ +I +WN    K +
Sbjct: 176 KMVKAWNL-NQFQIEADFIGHNSN---INTLTASPDGTLIASAGKDGEIMLWNLAAKKAM 231
Query: 475 EILSGHSMTVNCVSWNPKRPKMLASAS 501
             LS     V  ++++P R  + A+ +
Sbjct: 232 YTLSAQD-EVFSLAFSPNRYWLAAATA 257

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/267 (22%), Positives = 104/267 (38%), Gaps = 44/267 (16%)
Query: 237 LASSSSDCSAIIWKVL-EDSKLTLK-HTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLW 294
           L S+S D + I WK+  +D K  +   + + H + V     + D    L+    + L+LW
Sbjct: 27  LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 86
Query: 295 DVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIP 354
           DV TG     F  H   V S      +  ++ GS D              IK W      
Sbjct: 87  DVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD------------KTIKVW------ 128
Query: 355 KVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNS 414
                  T  G+ L ++L   D             +S+   + +     D    I   N 
Sbjct: 129 -------TIKGQCLATLLGHNDW------------VSQVRVVPNEKADDDSVTIISAGND 169
Query: 415 QEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPI 474
           + +  W++  +++    + GH+ N   I +     DGT IAS  ++ +I +WN    K +
Sbjct: 170 KMVKAWNL-NQFQIEADFIGHNSN---INTLTASPDGTLIASAGKDGEIMLWNLAAKKAM 225
Query: 475 EILSGHSMTVNCVSWNPKRPKMLASAS 501
             LS     V  ++++P R  + A+ +
Sbjct: 226 YTLSAQD-EVFSLAFSPNRYWLAAATA 251

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/267 (22%), Positives = 104/267 (38%), Gaps = 44/267 (16%)
Query: 237 LASSSSDCSAIIWKVL-EDSKLTLK-HTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLW 294
           L S+S D + I WK+  +D K  +   + + H + V     + D    L+    + L+LW
Sbjct: 33  LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 295 DVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIP 354
           DV TG     F  H   V S      +  ++ GS D              IK W      
Sbjct: 93  DVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD------------KTIKVW------ 134
Query: 355 KVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNS 414
                  T  G+ L ++L   D             +S+   + +     D    I   N 
Sbjct: 135 -------TIKGQCLATLLGHNDW------------VSQVRVVPNEKADDDSVTIISAGND 175
Query: 415 QEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPI 474
           + +  W++  +++    + GH+ N   I +     DGT IAS  ++ +I +WN    K +
Sbjct: 176 KMVKAWNL-NQFQIEADFIGHNSN---INTLTASPDGTLIASAGKDGEIMLWNLAAKKAM 231
Query: 475 EILSGHSMTVNCVSWNPKRPKMLASAS 501
             LS     V  ++++P R  + A+ +
Sbjct: 232 YTLSAQD-EVFSLAFSPNRYWLAAATA 257

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 432 YTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRN---SKPIEILSGHSMTVNCVS 488
           +TGH+    V    +  L  +   S +++ ++ IW+ RN   SKP   +  H+  VNC+S
Sbjct: 231 FTGHT--AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLS 288
Query: 489 WNPKRPKMLASASDDHTIRIW 509
           +NP    +LA+ S D T+ +W
Sbjct: 289 FNPYSEFILATGSADKTVALW 309

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 432 YTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRN---SKPIEILSGHSMTVNCVS 488
           +TGHS    V    +  L  +   S +++ ++ IW+ R+   SKP  ++  H+  VNC+S
Sbjct: 225 FTGHS--AVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLS 282
Query: 489 WNPKRPKMLASASDDHTIRIW 509
           +NP    +LA+ S D T+ +W
Sbjct: 283 FNPYSEFILATGSADKTVALW 303

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 432 YTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRN---SKPIEILSGHSMTVNCVS 488
           +TGHS    V    +  L  +   S +++ ++ IW+ R+   SKP  ++  H+  VNC+S
Sbjct: 225 FTGHS--AVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLS 282
Query: 489 WNPKRPKMLASASDDHTIRIW 509
           +NP    +LA+ S D T+ +W
Sbjct: 283 FNPYSEFILATGSADKTVALW 303

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 72/334 (21%), Positives = 130/334 (38%), Gaps = 53/334 (15%)
Query: 221 HKNEVWFVQFSNNGEYLASSSSDCSAIIWKV--------------LEDSKLTL---KHTL 263
           H   V+ + +S +G  +AS+S+D +  IW V              +ED +L +   K  L
Sbjct: 238 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQAL 297
Query: 264 RS-----------------------HQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI 300
            S                       H   ++ ++ S D   L +      +  WD+ TGI
Sbjct: 298 VSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI 357
Query: 301 CKHTFGD-HGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDL 359
               F D H  +++                D  K +       +  KA       + L L
Sbjct: 358 SNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGL 417
Query: 360 AVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFI-VNLNSQEIH 418
           AV+ DG+  ++    K I I + G   E  IS      +LS   + K F+ V     ++H
Sbjct: 418 AVSADGDIAVAACY-KHIAIYSHGKLTEVPISYNSSCVALS---NDKQFVAVGGQDSKVH 473
Query: 419 MWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILS 478
           ++ ++G      K   H      I S     +G F+ +  ++ ++  ++  N+  +   +
Sbjct: 474 VYKLSGASVSEVKTIVHPAE---ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTN 530
Query: 479 G---HSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
               H+  V CVSW+P   + LA+ S D+++ +W
Sbjct: 531 SWTFHTAKVACVSWSPDNVR-LATGSLDNSVIVW 563

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 89/201 (44%), Gaps = 15/201 (7%)
Query: 237 LASSSSDCSAIIWKVLEDSK---LTLKH-TLRSHQNPVSFVAWSPDDTKLLTCGNAEVLK 292
           L S S D + +IWK+ E+ +     + H  L  H + VS +A S ++   ++    + L+
Sbjct: 42  LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLR 101
Query: 293 LWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIF--MCDCDGNEIKA--- 347
           LWD+ TG     F  H   V S A+ PD+++++   ++ E  ++  + +C  +  +    
Sbjct: 102 LWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENH 161
Query: 348 --WRG-TRIPKVLDLA--VTPDGENLISVLSDKDIRILNLGTYAERVI-SEEHPITSLSV 401
             W    R   ++  A  V P      SV  D  +++ N          + E  +  LS+
Sbjct: 162 SDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSI 221
Query: 402 SVDCKNFIVNLNSQEIHMWDV 422
           S + K        +++ +WD+
Sbjct: 222 SPNGKYIATGGKDKKLLIWDI 242

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 60/267 (22%), Positives = 103/267 (38%), Gaps = 44/267 (16%)
Query: 237 LASSSSDCSAIIWKVL-EDSKLTLK-HTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLW 294
           L S+S D + I WK+  +D K  +   + + H + V     + D    L+    + L+LW
Sbjct: 33  LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 295 DVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIP 354
           DV TG     F  H   V S      +  ++ GS D              IK W      
Sbjct: 93  DVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRD------------KTIKVW------ 134
Query: 355 KVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNS 414
                  T  G+ L ++L   D             +S+   + +     D    I   N 
Sbjct: 135 -------TIKGQCLATLLGHNDW------------VSQVRVVPNEKADDDSVTIISAGND 175
Query: 415 QEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPI 474
           + +  W++  +++    + GH+ N   I +     DGT IAS  ++ +I +WN    K  
Sbjct: 176 KXVKAWNL-NQFQIEADFIGHNSN---INTLTASPDGTLIASAGKDGEIXLWNLAAKKAX 231
Query: 475 EILSGHSMTVNCVSWNPKRPKMLASAS 501
             LS     V  ++++P R  + A+ +
Sbjct: 232 YTLSAQD-EVFSLAFSPNRYWLAAATA 257

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 55/257 (21%), Positives = 95/257 (36%), Gaps = 50/257 (19%)
Query: 262 TLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDS 321
           TL+ H   V  + W+P+   +++      L +W+  T    H    H   V  CA+ P+ 
Sbjct: 61  TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG 120
Query: 322 KRLVCGSSDTEKGIF----MCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDI 377
           + + CG  D+   IF      D DGN         +P    L       +    + D++ 
Sbjct: 121 QSVACGGLDSACSIFNLSSQADRDGN---------MPVSRVLTGHKGYASSCQYVPDQET 171
Query: 378 RILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDV-AGKWEKPFKY---T 433
           R+                             I     Q   +WDV  G+    F     +
Sbjct: 172 RL-----------------------------ITGSGDQTCVLWDVTTGQRISIFGSEFPS 202
Query: 434 GHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRR-NSKPIEILSGHSMTVNCVSWNPK 492
           GH+ +  V+      L+     SGS ++ + +W+ R  S+ +    GH   +N V + P 
Sbjct: 203 GHTAD--VLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPD 260
Query: 493 RPKMLASASDDHTIRIW 509
             +   + SDD T R++
Sbjct: 261 GQR-FGTGSDDGTCRLF 276

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 10/129 (7%)
Query: 176 LVETAVTSQIDSCQY--HNSSVA-------ISLYEDHCCGRDQIPTETVQILTEHKNEVW 226
           L ETA    I S  +  H S +A       +S++            + + I+  H+NEV 
Sbjct: 52  LDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVK 111
Query: 227 FVQFSNNGEYLASSSSDCSAIIWKVLEDS-KLTLKHTLRSHQNPVSFVAWSPDDTKLLTC 285
            V +SN+G YLA+ S D S  IW+  E   +      L+ H   V  V W P +  L + 
Sbjct: 112 GVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASS 171
Query: 286 GNAEVLKLW 294
              + +++W
Sbjct: 172 SYDDTVRIW 180

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 450 DGTFIASGSENSQIYIWNRRNSKP----IEILSGHSMTVNCVSWNPKRPKMLASASDDHT 505
           DG ++A+ S +  ++IW    S      I +L  HS  V  V W+P    +LAS+S D T
Sbjct: 118 DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA-LLASSSYDDT 176
Query: 506 IRIW 509
           +RIW
Sbjct: 177 VRIW 180

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 432 YTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRN---SKPIEILSGHSMTVNCVS 488
           +TGH+    V    +  L  +   S +++ ++ IW+ R+   SKP   +  H+  VNC+S
Sbjct: 223 FTGHT--AVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLS 280
Query: 489 WNPKRPKMLASASDDHTIRIW 509
           +NP    +LA+ S D T+ +W
Sbjct: 281 FNPYSEFILATGSADKTVALW 301

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/235 (21%), Positives = 97/235 (41%), Gaps = 18/235 (7%)
Query: 278 DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM 337
           DD K+++      +K+WD  T  CK     H   V    +  D + ++ GSSD+   ++ 
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVW- 198
Query: 338 CDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAE---RVISEEH 394
            D +  E+          VL L    +   +++   D+ I + ++ +  +   R +   H
Sbjct: 199 -DVNTGEMLNTLIHHCEAVLHLRF--NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGH 255
Query: 395 PITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFI 454
                 V  D K  +     + I +W+ +   E      GH +      +C    D   +
Sbjct: 256 RAAVNVVDFDDKYIVSASGDRTIKVWNTS-TCEFVRTLNGHKRGI----ACLQYRD-RLV 309
Query: 455 ASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
            SGS ++ I +W+      + +L GH   V C+ ++ KR   + S + D  I++W
Sbjct: 310 VSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR---IVSGAYDGKIKVW 361

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	517
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.98
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.98
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.98
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
2pm7_B	297	Protein transport protein SEC13, protein transport	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.96
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.95
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.95
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.95
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.95
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.94
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.94
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.94
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.93
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.93
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.93
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.93
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.93
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.93
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.93
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.92
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.92
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.92
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.92
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.92
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.91
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.91
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.9
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.9
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.89
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.89
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.88
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.88
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.88
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.87
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.87
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.87
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.87
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.86
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.85
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.85
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.84
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.83
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.83
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.83
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.82
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.82
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.81
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.81
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.81
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.8
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.8
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.79
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.79
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.78
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.77
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.77
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.76
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.75
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.74
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.74
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.73
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.73
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.73
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.72
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.71
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.7
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.7
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.7
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.7
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.7
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.7
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.68
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.68
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.67
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.66
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.65
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.62
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.6
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.59
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.59
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.59
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.58
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.57
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.57
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.55
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.54
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.54
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.53
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.51
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.5
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.5
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.47
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.45
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.45
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.45
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.43
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.43
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.42
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.36
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.34
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.26
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.26
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.23
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.22
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.2
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.19
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.19
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.18
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.18
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.16
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.16
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.15
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.15
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.13
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.08
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.05
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.01
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.01
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.99
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.98
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.98
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.96
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.91
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.9
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.86
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.85
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.81
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.81
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.8
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.78
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.78
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.77
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.77
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.76
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.72
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.71
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.7
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.69
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.67
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.67
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.66
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.65
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.65
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.64
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.64
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.64
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.62
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.6
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.57
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.57
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.55
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.54
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.54
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.52
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.51
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.5
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.49
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.48
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.46
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.41
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.38
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.35
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.33
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.32
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.3
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.24
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.23
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.23
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.2
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	98.19
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.18
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.17
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.16
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.15
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.15
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.13
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.13
2xtc_A	90	F-box-like/WD repeat-containing protein TBL1X; tra	98.12
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	98.08
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.06
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.04
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.01
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.96
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.94
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.93
1uuj_A	88	Platelet-activating factor acetylhydrolase IB ALP	97.91
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	97.85
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.85
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.85
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.83
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.81
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.78
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.78
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.77
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.76
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.73
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.72
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.69
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.67
3ott_A	758	Two-component system sensor histidine kinase; beta	97.66
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.61
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.57
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.49
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.43
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.42
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.36
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.28
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.24
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.2
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.15
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.12
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.05
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.93
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.9
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.9
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.82
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.78
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.78
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	96.77
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.69
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	96.27
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	95.87
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	95.83
3ott_A	758	Two-component system sensor histidine kinase; beta	95.8
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	95.48
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	95.45
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	95.11
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	94.95
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	94.54
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	94.38
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	93.73
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	93.39
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	92.1
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	92.09
2d68_A	82	FOP, FGFR1OP; alpha helical bundle, dimer, cell cy	90.7
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	90.05
3no0_A	276	DNA gyrase subunit A; DNA topology, topoisomerase,	87.79
3no0_A	276	DNA gyrase subunit A; DNA topology, topoisomerase,	86.29
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	81.72
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	81.0
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	80.99
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	80.82

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.5e-54  Score=420.27  Aligned_cols=287  Identities=22%  Similarity=0.384  Sum_probs=258.4

Q ss_pred             EEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEE
Q 042434          215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLW  294 (517)
Q Consensus       215 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw  294 (517)
                      ...+.+|.++|++++|+|++.+|++|+.||+|+|||+.++.   ...++.+|.+.|.+++|+|++++|++|+.||+|++|
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~---~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iw  177 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD---FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW  177 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC---CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEE
T ss_pred             eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---EEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence            34578999999999999999999999999999999997664   446789999999999999999999999999999999


Q ss_pred             ECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCC-eeEeeeCcCCCceEEEEEccCCCEEEEEeC
Q 042434          295 DVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGN-EIKAWRGTRIPKVLDLAVTPDGENLISVLS  373 (517)
Q Consensus       295 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  373 (517)
                      |+.+++++..+.+|...|.+++|+|+++++++|+.|+.  |.+||.... .+..+.. +...|.++.++|++.++++++.
T Consensus       178 d~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~--i~~wd~~~~~~~~~~~~-h~~~v~~~~~~~~g~~l~s~s~  254 (410)
T 1vyh_C          178 DFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKT--IKMWEVQTGYCVKTFTG-HREWVRMVRPNQDGTLIASCSN  254 (410)
T ss_dssp             ETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSE--EEEEETTTCCEEEEEEC-CSSCEEEEEECTTSSEEEEEET
T ss_pred             eCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCe--EEEEECCCCcEEEEEeC-CCccEEEEEECCCCCEEEEEcC
Confidence            99999999999999999999999999999999999999  888898754 4445544 4468999999999999999999


Q ss_pred             CCcEEEEECCCce--EEeeccCCCeeEEEEcCC--------------------CCEEEEEeCCCeEEEEEcCCCCccceE
Q 042434          374 DKDIRILNLGTYA--ERVISEEHPITSLSVSVD--------------------CKNFIVNLNSQEIHMWDVAGKWEKPFK  431 (517)
Q Consensus       374 dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~--------------------~~~l~~~~~d~~i~~~d~~~~~~~~~~  431 (517)
                      |+.|++||+.+..  .....+...+.+++|+|+                    +.++++++.|+.|++||++++ .....
T Consensus       255 D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~-~~~~~  333 (410)
T 1vyh_C          255 DQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG-MCLMT  333 (410)
T ss_dssp             TSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT-EEEEE
T ss_pred             CCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC-ceEEE
Confidence            9999999998876  455678889999999996                    678999999999999999887 67777


Q ss_pred             EeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCC
Q 042434          432 YTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGP  511 (517)
Q Consensus       432 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~  511 (517)
                      +.+|...   +..+.++|+|++|++|+.||.|++||+.+++++.++.+|...|++++|+|++ .+|+||+.||+|++|++
T Consensus       334 ~~~h~~~---v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          334 LVGHDNW---VRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTA-PYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             EECCSSC---EEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSS-SCEEEEETTSEEEEEC-
T ss_pred             EECCCCc---EEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCC-CEEEEEeCCCcEEEEeC
Confidence            8888765   5566679999999999999999999999999999999999999999999999 69999999999999996


Q ss_pred             C
Q 042434          512 C  512 (517)
Q Consensus       512 ~  512 (517)
                      +
T Consensus       410 r  410 (410)
T 1vyh_C          410 R  410 (410)
T ss_dssp             -
T ss_pred             C
Confidence            3

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.6e-46  Score=352.59  Aligned_cols=293  Identities=23%  Similarity=0.297  Sum_probs=258.1

Q ss_pred             cccEEEeccccCcEEEEEECCC----CCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeC
Q 042434          212 TETVQILTEHKNEVWFVQFSNN----GEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGN  287 (517)
Q Consensus       212 ~~~~~~l~~h~~~v~~~~~s~~----~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~  287 (517)
                      +...+.+.+|.+.|++++|+|+    +.+|++|+.|++|+||++..+ .......+.+|...|.+++|+|++.++++++.
T Consensus        22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~-~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~  100 (321)
T 3ow8_A           22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDE-RLDLQWSLEGHQLGVVSVDISHTLPIAASSSL  100 (321)
T ss_dssp             EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETT-EEEEEEEECCCSSCEEEEEECSSSSEEEEEET
T ss_pred             hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCC-CeeeeeeeccCCCCEEEEEECCCCCEEEEEeC
Confidence            3456677899999999999985    679999999999999999754 33455678999999999999999999999999


Q ss_pred             CCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCE
Q 042434          288 AEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGEN  367 (517)
Q Consensus       288 dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  367 (517)
                      |++|++||+.+++.+..+..+...+.+++|+|++++|++++.|+.  +.+|+............+...+.+++|+|++++
T Consensus       101 D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~--v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~  178 (321)
T 3ow8_A          101 DAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGK--VNIFGVESGKKEYSLDTRGKFILSIAYSPDGKY  178 (321)
T ss_dssp             TSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSE--EEEEETTTCSEEEEEECSSSCEEEEEECTTSSE
T ss_pred             CCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCc--EEEEEcCCCceeEEecCCCceEEEEEECCCCCE
Confidence            999999999999999999999999999999999999999999999  788888754443333344458999999999999


Q ss_pred             EEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEee
Q 042434          368 LISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSC  445 (517)
Q Consensus       368 l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~  445 (517)
                      +++++.||.|++||+++++  .....+..+|.+++|+|+++++++++.|+.|++||++.. .....+.+|...   +..+
T Consensus       179 lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~---v~~~  254 (321)
T 3ow8_A          179 LASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA-NLAGTLSGHASW---VLNV  254 (321)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC-CEEEEECCCSSC---EEEE
T ss_pred             EEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc-ceeEEEcCCCCc---eEEE
Confidence            9999999999999999887  344567789999999999999999999999999999876 566777777765   5566


Q ss_pred             cCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCC
Q 042434          446 FGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPC  512 (517)
Q Consensus       446 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~  512 (517)
                      .|+|++.+|++|+.||+|++||+.+++++.++.+|.+.|.+++|+|++ ..|++++.||+|++||..
T Consensus       255 ~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g-~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          255 AFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNG-SKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTCCEEEEECC
T ss_pred             EECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCC-CEEEEEeCCCeEEEEeCC
Confidence            679999999999999999999999999999999999999999999999 799999999999999964

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.5e-45  Score=349.40  Aligned_cols=292  Identities=18%  Similarity=0.333  Sum_probs=255.4

Q ss_pred             CCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCC
Q 042434          210 IPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAE  289 (517)
Q Consensus       210 ~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg  289 (517)
                      .+.....++.+|.+.|++++|+|++++|++|+.||+|++||..++   .....+..|...|.+++|+|++++|++|+.|+
T Consensus        43 ~~~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~  119 (340)
T 1got_B           43 IQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTT---NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDN  119 (340)
T ss_dssp             CCCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC---CEEEEEECSSSCEEEEEECTTSSEEEEEETTC
T ss_pred             ccchhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC---CcceEeecCCccEEEEEECCCCCEEEEEeCCC
Confidence            345678899999999999999999999999999999999999766   34567788999999999999999999999999


Q ss_pred             eEEEEECCCC----cEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCC
Q 042434          290 VLKLWDVETG----ICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDG  365 (517)
Q Consensus       290 ~i~iwd~~~~----~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  365 (517)
                      .|++|++.++    .....+.+|...|.++.|++++. +++++.|+.  |.+||............+.+.|.+++|+|++
T Consensus       120 ~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~--i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~  196 (340)
T 1got_B          120 ICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTT--CALWDIETGQQTTTFTGHTGDVMSLSLAPDT  196 (340)
T ss_dssp             EEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSC--EEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred             eEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCc--EEEEECCCCcEEEEEcCCCCceEEEEECCCC
Confidence            9999999875    35567789999999999998775 899999999  8889988655544444555789999999999


Q ss_pred             CEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEE
Q 042434          366 ENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIR  443 (517)
Q Consensus       366 ~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~  443 (517)
                      +++++|+.|+.|++||++++.  .....|...|.+++|+|+++++++++.|+.|++||++.. .....+. +......+.
T Consensus       197 ~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~-~~~~~~~-~~~~~~~v~  274 (340)
T 1got_B          197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD-QELMTYS-HDNIICGIT  274 (340)
T ss_dssp             SEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEEC-CTTCCSCEE
T ss_pred             CEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC-cEEEEEc-cCCcccceE
Confidence            999999999999999998876  445568889999999999999999999999999999876 3333333 322223466


Q ss_pred             eecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeC
Q 042434          444 SCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWG  510 (517)
Q Consensus       444 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~  510 (517)
                      ++.|+|+|+++++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|++ .+|+||+.||+|++||
T Consensus       275 ~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg-~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          275 SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG-MAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEEC
T ss_pred             EEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCC-CEEEEEcCCccEEecC
Confidence            77789999999999999999999999999999999999999999999999 7999999999999997

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=4.4e-45  Score=340.59  Aligned_cols=293  Identities=17%  Similarity=0.240  Sum_probs=254.1

Q ss_pred             cccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeE
Q 042434          212 TETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVL  291 (517)
Q Consensus       212 ~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i  291 (517)
                      .+..+++.+|.+.|++++|+|++++|++|+.||+|++||+.++   .....+..|..+|.+++|+|++++|++|+.|++|
T Consensus         3 l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i   79 (304)
T 2ynn_A            3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQ---VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRI   79 (304)
T ss_dssp             CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEE
T ss_pred             ceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC---ceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEE
Confidence            3567789999999999999999999999999999999999765   4567788999999999999999999999999999


Q ss_pred             EEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCC-eeEeeeCcCCCceEEEEEcc-CCCEEE
Q 042434          292 KLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGN-EIKAWRGTRIPKVLDLAVTP-DGENLI  369 (517)
Q Consensus       292 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~  369 (517)
                      ++||+.+++++..+.+|...|.+++|+|++.++++|+.|++  |.+||.... ........+...|.+++|+| ++..++
T Consensus        80 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~--v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~  157 (304)
T 2ynn_A           80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT--VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA  157 (304)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSC--EEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEE
T ss_pred             EEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCe--EEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEE
Confidence            99999999999999999999999999999999999999999  777787643 44444445557899999999 678999


Q ss_pred             EEeCCCcEEEEECCCce---EEeeccCCCeeEEEEcC--CCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEe
Q 042434          370 SVLSDKDIRILNLGTYA---ERVISEEHPITSLSVSV--DCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRS  444 (517)
Q Consensus       370 ~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~s~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~  444 (517)
                      +|+.|+.|++||+++..   .....+...+..+.++|  ++.++++++.|+.|++||+++. .....+.+|...   +..
T Consensus       158 sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~-~~~~~~~~h~~~---v~~  233 (304)
T 2ynn_A          158 SGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK-SCVATLEGHMSN---VSF  233 (304)
T ss_dssp             EEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT-EEEEEEECCSSC---EEE
T ss_pred             EEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC-ccceeeCCCCCC---EEE
Confidence            99999999999998765   22334557789999987  7789999999999999999887 677788888776   556


Q ss_pred             ecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCc-EEEEeeCCCcEEEeCCCCC
Q 042434          445 CFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPK-MLASASDDHTIRIWGPCQS  514 (517)
Q Consensus       445 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~-~l~s~~~dg~v~iw~~~~~  514 (517)
                      +.++|++.+|++|+.||+|++||..+++++.++..|...+.+++|+|++.. ++++|++|| +.+|++...
T Consensus       234 ~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~~  303 (304)
T 2ynn_A          234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGND  303 (304)
T ss_dssp             EEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC--
T ss_pred             EEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEeccC
Confidence            667999999999999999999999999999999999999999999998844 477776665 677877653

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.3e-44  Score=339.05  Aligned_cols=294  Identities=29%  Similarity=0.481  Sum_probs=259.1

Q ss_pred             cccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeE
Q 042434          212 TETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVL  291 (517)
Q Consensus       212 ~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i  291 (517)
                      ......+.+|.+.|++++|+|++++|++|+.||.|++|+..++   .....+.+|...|.+++|+|++++|++++.||.|
T Consensus        13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i   89 (312)
T 4ery_A           13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTL   89 (312)
T ss_dssp             CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCc---ccchhhccCCCceEEEEEcCCCCEEEEECCCCEE
Confidence            4567788999999999999999999999999999999999765   4456788999999999999999999999999999


Q ss_pred             EEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEE
Q 042434          292 KLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISV  371 (517)
Q Consensus       292 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  371 (517)
                      ++||+.+++++..+..|...|.+++|+|+++++++|+.|+.  |.+||............+...|.+++|+|++++++++
T Consensus        90 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  167 (312)
T 4ery_A           90 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES--VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS  167 (312)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSC--EEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             EEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCc--EEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEE
Confidence            99999999999999999999999999999999999999999  8888987654443344455689999999999999999


Q ss_pred             eCCCcEEEEECCCceE-E--eeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCC
Q 042434          372 LSDKDIRILNLGTYAE-R--VISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGG  448 (517)
Q Consensus       372 ~~dg~i~i~d~~~~~~-~--~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s  448 (517)
                      +.||.|++||+++... .  ...+..++..++|+|+++++++++.|+.|++||+++. .....+.+|......+...+..
T Consensus       168 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~  246 (312)
T 4ery_A          168 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYCIFANFSV  246 (312)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT-EEEEEECSSCCSSSCCCEEEEC
T ss_pred             eCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC-cEEEEEEecCCceEEEEEEEEe
Confidence            9999999999998762 2  2345567999999999999999999999999999876 6667777776655444444446


Q ss_pred             CCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEee--CCCcEEEeCCC
Q 042434          449 LDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS--DDHTIRIWGPC  512 (517)
Q Consensus       449 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~--~dg~v~iw~~~  512 (517)
                      +++.++++|+.||.|++||+.+++.+..+.+|...|.+++|+|++ .++++++  .|++|++|+.+
T Consensus       247 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          247 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             SSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSS-SEEEEEECTTTCCEEEEECC
T ss_pred             CCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcC-CceEEEEccCCccEEEecCC
Confidence            789999999999999999999999999999999999999999999 6888887  69999999864

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=9.5e-45  Score=344.56  Aligned_cols=300  Identities=23%  Similarity=0.358  Sum_probs=245.3

Q ss_pred             cccEEEeccccC-cEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCe
Q 042434          212 TETVQILTEHKN-EVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEV  290 (517)
Q Consensus       212 ~~~~~~l~~h~~-~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~  290 (517)
                      ..++..+.+|.+ .|++++|+|+|++||+|+.|++|+||++..+..........+|...|.+++|+|++++|++|+.|++
T Consensus         5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~   84 (345)
T 3fm0_A            5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT   84 (345)
T ss_dssp             EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence            356788999988 9999999999999999999999999999765322223334789999999999999999999999999


Q ss_pred             EEEEECCCC--cEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCC---eeEeeeCcCCCceEEEEEccCC
Q 042434          291 LKLWDVETG--ICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGN---EIKAWRGTRIPKVLDLAVTPDG  365 (517)
Q Consensus       291 i~iwd~~~~--~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~  365 (517)
                      +++||+.++  +++..+.+|...|.+++|+|++++|++|+.|+.  |++|+....   ........+...|.+++|+|++
T Consensus        85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~--v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~  162 (345)
T 3fm0_A           85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKS--VWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQ  162 (345)
T ss_dssp             EEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC--EEEEEECTTSCEEEEEEECCCCSCEEEEEECSSS
T ss_pred             EEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCe--EEEEECCCCCCeEEEEEecCcCCCeEEEEECCCC
Confidence            999999876  457788899999999999999999999999999  666666532   2223334455689999999999


Q ss_pred             CEEEEEeCCCcEEEEECCCce----EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcc-------------
Q 042434          366 ENLISVLSDKDIRILNLGTYA----ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEK-------------  428 (517)
Q Consensus       366 ~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~-------------  428 (517)
                      +++++++.|+.|++||.++..    .....|...|.+++|+|++++|++++.|+.|++||.......             
T Consensus       163 ~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~  242 (345)
T 3fm0_A          163 ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWK  242 (345)
T ss_dssp             SCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEE
T ss_pred             CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccc
Confidence            999999999999999998764    345568889999999999999999999999999997432111             


Q ss_pred             -ceEEeC-cccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCc---------eeEEecCCCCCeeEEEecCCCCcEE
Q 042434          429 -PFKYTG-HSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSK---------PIEILSGHSMTVNCVSWNPKRPKML  497 (517)
Q Consensus       429 -~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~h~~~v~~v~~~~~~~~~l  497 (517)
                       ...+.+ |...   +..+.|+|++..+++++.|+.|++|+...+.         ......+|...|++++|+|+++.+|
T Consensus       243 ~~~~~~~~h~~~---v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l  319 (345)
T 3fm0_A          243 CICTLSGFHSRT---IYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLL  319 (345)
T ss_dssp             EEEEECSSCSSC---EEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEE
T ss_pred             eeEEecCCCCCc---EEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEE
Confidence             112222 3333   5566679999999999999999999987542         1223468999999999999986699


Q ss_pred             EEeeCCCcEEEeCCCCCCC
Q 042434          498 ASASDDHTIRIWGPCQSSE  516 (517)
Q Consensus       498 ~s~~~dg~v~iw~~~~~~~  516 (517)
                      +||+.||+|++|++.++++
T Consensus       320 aS~s~Dg~v~~W~~~~~~~  338 (345)
T 3fm0_A          320 ASCSDDGEVAFWKYQRPEG  338 (345)
T ss_dssp             EEEETTSCEEEEEECC---
T ss_pred             EEcCCCCcEEEEEecCCCC
Confidence            9999999999999988764

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2.1e-44  Score=343.26  Aligned_cols=292  Identities=20%  Similarity=0.333  Sum_probs=251.6

Q ss_pred             CCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCC
Q 042434          210 IPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAE  289 (517)
Q Consensus       210 ~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg  289 (517)
                      ...+....+.+|.+.|++++|+|++++||+|+.||+|+|||..++.   ....+..|...|.+++|+|++.++++|+.|+
T Consensus        52 ~~~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~---~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~  128 (354)
T 2pbi_B           52 FVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTN---KEHAVTMPCTWVMACAYAPSGCAIACGGLDN  128 (354)
T ss_dssp             CCCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC---EEEEEECSSSCCCEEEECTTSSEEEEESTTS
T ss_pred             cccEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCC---cceEEecCCCCEEEEEECCCCCEEEEeeCCC
Confidence            4456788999999999999999999999999999999999987653   4456777899999999999999999999999


Q ss_pred             eEEEEECCCC------cEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCee-EeeeCcCCCceEEEEEc
Q 042434          290 VLKLWDVETG------ICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEI-KAWRGTRIPKVLDLAVT  362 (517)
Q Consensus       290 ~i~iwd~~~~------~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~  362 (517)
                      .+++|++...      .....+..|...|.+++|+|++..|++++.|++  |.+||...... ..+.. +...|.+++++
T Consensus       129 ~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~--v~lwd~~~~~~~~~~~~-h~~~v~~~~~~  205 (354)
T 2pbi_B          129 KCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGT--CALWDVESGQLLQSFHG-HGADVLCLDLA  205 (354)
T ss_dssp             EEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSE--EEEEETTTCCEEEEEEC-CSSCEEEEEEC
T ss_pred             CEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCc--EEEEeCCCCeEEEEEcC-CCCCeEEEEEE
Confidence            9999998653      234566689999999999999999999999999  88889875544 44444 44689999998


Q ss_pred             c--CCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccC
Q 042434          363 P--DGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQN  438 (517)
Q Consensus       363 ~--~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~  438 (517)
                      |  +++.+++|+.||.|++||++++.  .....|...|.+++|+|++..+++++.|+.|++||++.. .....+..+. .
T Consensus       206 ~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~-~~~~~~~~~~-~  283 (354)
T 2pbi_B          206 PSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD-REVAIYSKES-I  283 (354)
T ss_dssp             CCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCTT-C
T ss_pred             eCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC-cEEEEEcCCC-c
Confidence            7  57899999999999999999887  445567889999999999999999999999999999876 3333333322 2


Q ss_pred             ceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeC
Q 042434          439 KYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWG  510 (517)
Q Consensus       439 ~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~  510 (517)
                      ...+.++.++|+|.+|++|+.||.|++||+.+++.+..+.+|.+.|++++|+|++ .+|++|+.||+|++|+
T Consensus       284 ~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg-~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          284 IFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDG-TAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             CSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTS-SCEEEEETTSEEEEEC
T ss_pred             ccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCC-CEEEEEcCCCCEEecC
Confidence            2235566779999999999999999999999999999999999999999999999 7999999999999996

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=7.5e-44  Score=334.51  Aligned_cols=292  Identities=21%  Similarity=0.291  Sum_probs=253.5

Q ss_pred             ccEEEeccccCcEEEEEECCCC-CEEEEeeCCCcEEEEEecCCCe--eeEEEEeccCCCCEEEEEECCCCCeEEEEeCCC
Q 042434          213 ETVQILTEHKNEVWFVQFSNNG-EYLASSSSDCSAIIWKVLEDSK--LTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAE  289 (517)
Q Consensus       213 ~~~~~l~~h~~~v~~~~~s~~~-~~l~t~~~dg~i~iw~~~~~~~--~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg  289 (517)
                      ....++.+|.+.|++++|+|++ ++|++|+.|++|++|++.....  ......+.+|...|.+++|+|++++|++|+.|+
T Consensus         8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~   87 (319)
T 3frx_A            8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDK   87 (319)
T ss_dssp             EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCC
Confidence            4567899999999999999965 8999999999999999864322  245678899999999999999999999999999


Q ss_pred             eEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccC-----
Q 042434          290 VLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPD-----  364 (517)
Q Consensus       290 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----  364 (517)
                      +|++||+.+++++..+.+|...|.+++|+|++.++++|+.|+.  |.+|+..+..+..+..+. ..+.++.++|.     
T Consensus        88 ~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~--i~vwd~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~  164 (319)
T 3frx_A           88 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKT--IKVWTIKGQCLATLLGHN-DWVSQVRVVPNEKADD  164 (319)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSC--EEEEETTSCEEEEECCCS-SCEEEEEECCC-----
T ss_pred             EEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCe--EEEEECCCCeEEEEeccC-CcEEEEEEccCCCCCC
Confidence            9999999999999999999999999999999999999999999  888898887777666554 58999999985     


Q ss_pred             -CCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceE
Q 042434          365 -GENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYV  441 (517)
Q Consensus       365 -~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~  441 (517)
                       +..+++++.|+.|++||+++..  .....|...+.+++|+|+++++++++.|+.|++||+.+. .....+..+.    .
T Consensus       165 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~----~  239 (319)
T 3frx_A          165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK-KAMYTLSAQD----E  239 (319)
T ss_dssp             -CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT-EEEEEEECCS----C
T ss_pred             CccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEecCCC----c
Confidence             4489999999999999999877  445678889999999999999999999999999999876 5555555443    2


Q ss_pred             EEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecC--------CCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434          442 IRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSG--------HSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ  513 (517)
Q Consensus       442 i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~  513 (517)
                      +..+.|+|++.++++++.+ .+++|++..+..+..+..        |...+.+++|+|+| .+|++|+.||.|++|++.+
T Consensus       240 v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg-~~l~sg~~Dg~i~vWd~~t  317 (319)
T 3frx_A          240 VFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADG-QTLFAGYTDNVIRVWQVMT  317 (319)
T ss_dssp             EEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTS-SEEEEEETTSCEEEEEEEE
T ss_pred             EEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCC-CEEEEeecCceEEEEEEee
Confidence            6677779999999988765 499999998877766643        45679999999999 7999999999999999876


Q ss_pred             C
Q 042434          514 S  514 (517)
Q Consensus       514 ~  514 (517)
                      +
T Consensus       318 ~  318 (319)
T 3frx_A          318 A  318 (319)
T ss_dssp             C
T ss_pred             c
Confidence            5

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=4.1e-45  Score=351.91  Aligned_cols=302  Identities=19%  Similarity=0.347  Sum_probs=255.8

Q ss_pred             CCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCC
Q 042434          209 QIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNA  288 (517)
Q Consensus       209 ~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d  288 (517)
                      .....+.+++.+|.+.|++++|+|++++|++|+.||+|+|||..++   .....+..|...|.+++|+|++++|++|+.|
T Consensus        53 ~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~---~~~~~~~~h~~~v~~~~~s~~g~~las~~~d  129 (380)
T 3iz6_a           53 PTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTS---QKTHAIKLHCPWVMECAFAPNGQSVACGGLD  129 (380)
T ss_dssp             CCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTT---EEEEEEECCCTTCCCCEECTTSSEEEECCSS
T ss_pred             cceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---ccceEEecCCCCEEEEEECCCCCEEEEeeCC
Confidence            3445678899999999999999999999999999999999999765   4557788999999999999999999999999


Q ss_pred             CeEEEEECCCCc-------EEEEeCCCCCceEEEEEeCC-CCeEEEeeCCCceeEEEEeCCCCee-Eee----eCcCCCc
Q 042434          289 EVLKLWDVETGI-------CKHTFGDHGFIVSSCAWFPD-SKRLVCGSSDTEKGIFMCDCDGNEI-KAW----RGTRIPK  355 (517)
Q Consensus       289 g~i~iwd~~~~~-------~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~d~~v~i~~~~~~~~~~-~~~----~~~~~~~  355 (517)
                      +.+++||+.+..       ....+.+|...|.++.|+|+ +..|++|+.|++  |.+||...... ..+    ...+...
T Consensus       130 ~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~--i~~wd~~~~~~~~~~~~~~~~~h~~~  207 (380)
T 3iz6_a          130 SACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQT--CVLWDVTTGQRISIFGSEFPSGHTAD  207 (380)
T ss_dssp             SCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSC--EEEECTTTCCEEEEECCCSSSSCCSC
T ss_pred             CcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCc--EEEEEcCCCcEEEEeecccCCCCccC
Confidence            999999997532       34457789999999999997 457999999999  88889875443 333    1345568


Q ss_pred             eEEEEEcc-CCCEEEEEeCCCcEEEEECCCc-e--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceE
Q 042434          356 VLDLAVTP-DGENLISVLSDKDIRILNLGTY-A--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFK  431 (517)
Q Consensus       356 i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~-~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~  431 (517)
                      |.++++++ +++.+++|+.|+.|++||++.. .  .....|...|.+++|+|+++++++++.|+.|++||++++ .....
T Consensus       208 v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~-~~~~~  286 (380)
T 3iz6_a          208 VLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG-HQLQV  286 (380)
T ss_dssp             EEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTT-EEEEE
T ss_pred             eEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCC-cEEEE
Confidence            99999987 8899999999999999999743 2  556678889999999999999999999999999999876 44444


Q ss_pred             EeCcccC----ceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEe----cCCCCCeeEEEecCCCCcEEEEeeCC
Q 042434          432 YTGHSQN----KYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEIL----SGHSMTVNCVSWNPKRPKMLASASDD  503 (517)
Q Consensus       432 ~~~~~~~----~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~h~~~v~~v~~~~~~~~~l~s~~~d  503 (517)
                      +..+...    ...+.++.|+|+|+++++|+.||.|++||+.+++.+..+    .+|.+.|++++|+|++ .+|+||+.|
T Consensus       287 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs~D  365 (380)
T 3iz6_a          287 YNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDG-SALCTGSWD  365 (380)
T ss_dssp             ECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSS-SEEEEECTT
T ss_pred             ecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCC-CEEEEeeCC
Confidence            4433221    122556677999999999999999999999999888777    6799999999999999 799999999


Q ss_pred             CcEEEeCCCCCCCC
Q 042434          504 HTIRIWGPCQSSEV  517 (517)
Q Consensus       504 g~v~iw~~~~~~~v  517 (517)
                      |+|++|++...+++
T Consensus       366 ~~i~iW~~~~~~~i  379 (380)
T 3iz6_a          366 KNLKIWAFSGHRKI  379 (380)
T ss_dssp             SCEEEEECCSSSSC
T ss_pred             CCEEEEecCCCccc
Confidence            99999999987653

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.3e-43  Score=336.71  Aligned_cols=296  Identities=21%  Similarity=0.253  Sum_probs=249.1

Q ss_pred             cccEEEeccccCcEEEEEE-----CC-CCCEEEEeeCCCcEEEEEecCCC----eeeEEEEeccCCCCEEEEEECCCCCe
Q 042434          212 TETVQILTEHKNEVWFVQF-----SN-NGEYLASSSSDCSAIIWKVLEDS----KLTLKHTLRSHQNPVSFVAWSPDDTK  281 (517)
Q Consensus       212 ~~~~~~l~~h~~~v~~~~~-----s~-~~~~l~t~~~dg~i~iw~~~~~~----~~~~~~~~~~h~~~v~~l~~s~~~~~  281 (517)
                      ......+.+|.+.|++++|     ++ ++++|++|+.|++|++||+....    .......+.+|...|.+++|+|++.+
T Consensus        11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~   90 (343)
T 2xzm_R           11 VVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF   90 (343)
T ss_dssp             EEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTE
T ss_pred             eeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCE
Confidence            4567789999999999999     77 99999999999999999996543    12456778999999999999999999


Q ss_pred             EEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeee--CcCCCceEEE
Q 042434          282 LLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWR--GTRIPKVLDL  359 (517)
Q Consensus       282 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~--~~~~~~i~~~  359 (517)
                      +++|+.|++|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.  |.+||..+.......  ..+...+.++
T Consensus        91 l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~--i~~wd~~~~~~~~~~~~~~~~~~v~~~  168 (343)
T 2xzm_R           91 AISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAERE--IKLWNILGECKFSSAEKENHSDWVSCV  168 (343)
T ss_dssp             EEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSC--EEEEESSSCEEEECCTTTSCSSCEEEE
T ss_pred             EEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCE--EEEEeccCCceeeeecccCCCceeeee
Confidence            999999999999999999999999999999999999999999999999999  888888765544333  2445689999


Q ss_pred             EEccCC----------CEEEEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcc
Q 042434          360 AVTPDG----------ENLISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEK  428 (517)
Q Consensus       360 ~~~~~~----------~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~  428 (517)
                      +|+|++          .++++++.|+.|++||..... .....|...|.+++|+|++++|++++.|+.|++||+......
T Consensus       169 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~  248 (343)
T 2xzm_R          169 RYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYP  248 (343)
T ss_dssp             EECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSC
T ss_pred             eeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCccc
Confidence            999987          789999999999999965443 445678889999999999999999999999999999554344


Q ss_pred             ceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeE--Eec-----------CCCCCeeEEEecCCCCc
Q 042434          429 PFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIE--ILS-----------GHSMTVNCVSWNPKRPK  495 (517)
Q Consensus       429 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~-----------~h~~~v~~v~~~~~~~~  495 (517)
                      ...+.. ..   .+..+.|+|++.+++++ .|+.|++||+.+++...  .+.           +|...|.+++|+|++ .
T Consensus       249 ~~~~~~-~~---~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~  322 (343)
T 2xzm_R          249 QREFDA-GS---TINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALG-K  322 (343)
T ss_dssp             SEEEEC-SS---CEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSS-C
T ss_pred             ceeecC-CC---cEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCC-C
Confidence            444322 22   26677779999988765 57789999998876543  443           688899999999999 7


Q ss_pred             EEEEeeCCCcEEEeCCCCCC
Q 042434          496 MLASASDDHTIRIWGPCQSS  515 (517)
Q Consensus       496 ~l~s~~~dg~v~iw~~~~~~  515 (517)
                      +|++|+.||.|++|++.++.
T Consensus       323 ~l~sg~~Dg~v~~w~~~~g~  342 (343)
T 2xzm_R          323 KLFAGFTDGVIRTFSFETSA  342 (343)
T ss_dssp             CEEEEETTSEEEEEEEEEEE
T ss_pred             eEEEecCCceEEEEEEEccC
Confidence            99999999999999987654

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.1e-43  Score=335.71  Aligned_cols=286  Identities=16%  Similarity=0.185  Sum_probs=231.8

Q ss_pred             cccCcEEEEEECCCCCEEEEeeCCCcEEEEEecC--------CCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeE
Q 042434          220 EHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLE--------DSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVL  291 (517)
Q Consensus       220 ~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~--------~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i  291 (517)
                      .|...|.+++|+|||++|++++ |+++++||...        ............|...|.+++|+|++ .|++|+.||+|
T Consensus        28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v  105 (344)
T 4gqb_B           28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAV  105 (344)
T ss_dssp             SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEE
T ss_pred             cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEE
Confidence            4778899999999999999887 77888886310        00000111122356789999999985 78899999999


Q ss_pred             EEEECCCCcEEEE----eCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCC-
Q 042434          292 KLWDVETGICKHT----FGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGE-  366 (517)
Q Consensus       292 ~iwd~~~~~~~~~----~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-  366 (517)
                      +|||+.+++....    ..+|...|++++|+|++++|++|+.|++  |.+||..+.........|...|.+++|++++. 
T Consensus       106 ~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~--i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~  183 (344)
T 4gqb_B          106 ELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDIC--IKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDS  183 (344)
T ss_dssp             EEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSC--EEEEETTTTEEEEEECCCSSCEEEEEECSSCTT
T ss_pred             EEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCe--EEEEECCCCcEEEEEcCcCCceEEEEecCCCCC
Confidence            9999999875543    3489999999999999999999999999  88889886665555555667999999999985 


Q ss_pred             EEEEEeCCCcEEEEECCCce-EEe---eccCCCeeEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceE
Q 042434          367 NLISVLSDKDIRILNLGTYA-ERV---ISEEHPITSLSVSVD-CKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYV  441 (517)
Q Consensus       367 ~l~~~~~dg~i~i~d~~~~~-~~~---~~~~~~i~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~  441 (517)
                      .+++++.|+.|++||+++++ ...   ..+...+.+++|+|+ +.++++++.|+.|++||+++. ..+..+.+|...   
T Consensus       184 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~-~~~~~~~~h~~~---  259 (344)
T 4gqb_B          184 VFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST-SCVLSSAVHSQC---  259 (344)
T ss_dssp             EEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC---CCEEEECCSSC---
T ss_pred             ceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC-cEEEEEcCCCCC---
Confidence            78999999999999999877 222   234557899999995 567889999999999999887 777888888876   


Q ss_pred             EEeecCCCCC-cEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCC
Q 042434          442 IRSCFGGLDG-TFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQS  514 (517)
Q Consensus       442 i~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~  514 (517)
                      +.++.|+|++ ++|++|+.||+|++||+.+++++ .+.+|.+.|++++|+|++..+|+|||.||+|++|++.+.
T Consensus       260 v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~  332 (344)
T 4gqb_B          260 VTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE  332 (344)
T ss_dssp             EEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred             EEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence            5566679987 58999999999999999988765 567899999999999998778899999999999999764

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.1e-43  Score=338.57  Aligned_cols=289  Identities=18%  Similarity=0.221  Sum_probs=230.6

Q ss_pred             eccccCcEEEEEECCCCCEEEEeeC------CCcEEEEEecCCCee-eEEEEeccCCCCEEEEEECCCCCeEEEEeCCCe
Q 042434          218 LTEHKNEVWFVQFSNNGEYLASSSS------DCSAIIWKVLEDSKL-TLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEV  290 (517)
Q Consensus       218 l~~h~~~v~~~~~s~~~~~l~t~~~------dg~i~iw~~~~~~~~-~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~  290 (517)
                      ..+|.+.|++++|||||++||+|+.      |+.|++|+..++... .......+|...|.+++|+|++. +++++.||+
T Consensus        38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~  116 (357)
T 4g56_B           38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGA  116 (357)
T ss_dssp             --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSC
T ss_pred             cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCE
Confidence            3579999999999999999999997      778999987554321 11233456889999999999985 556788999


Q ss_pred             EEEEECCCCcEEE----EeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCC
Q 042434          291 LKLWDVETGICKH----TFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGE  366 (517)
Q Consensus       291 i~iwd~~~~~~~~----~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  366 (517)
                      |++||+.+++...    ...+|...|.+++|+|++++|++|+.|+.  |.+||............+...|.+++|++++.
T Consensus       117 v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~--v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~  194 (357)
T 4g56_B          117 VELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFS--VKVWDLSQKAVLKSYNAHSSEVNCVAACPGKD  194 (357)
T ss_dssp             EEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSC--EEEEETTTTEEEEEECCCSSCEEEEEECTTCS
T ss_pred             EEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCe--EEEEECCCCcEEEEEcCCCCCEEEEEEccCCC
Confidence            9999999887543    33478999999999999999999999999  88889887665555555667899999999885


Q ss_pred             -EEEEEeCCCcEEEEECCCceE----EeeccCCCeeEEEEcCCC-CEEEEEeCCCeEEEEEcCCCCccceEEeCcccCce
Q 042434          367 -NLISVLSDKDIRILNLGTYAE----RVISEEHPITSLSVSVDC-KNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKY  440 (517)
Q Consensus       367 -~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~i~~~~~s~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~  440 (517)
                       .+++++.||.|++||+++++.    ....+...+.+++|+|++ .++++++.|+.|++||+++. .....+.+|...  
T Consensus       195 ~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~-~~~~~~~~~~~~--  271 (357)
T 4g56_B          195 TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP-DSAQTSAVHSQN--  271 (357)
T ss_dssp             SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG-GGCEEECCCSSC--
T ss_pred             ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC-cEeEEEecccee--
Confidence             788999999999999988762    223456679999999974 67888999999999999887 677778888776  


Q ss_pred             EEEeecCCCCC-cEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecC-CCCcEEEEeeCCCcEEEeCCCCCC
Q 042434          441 VIRSCFGGLDG-TFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNP-KRPKMLASASDDHTIRIWGPCQSS  515 (517)
Q Consensus       441 ~i~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~-~~~~~l~s~~~dg~v~iw~~~~~~  515 (517)
                       +.++.|+|++ ++|++|+.||+|+|||+++++++..+ +|.+.|++++|+| ++ .+|+|+|.||+|++|++.+..
T Consensus       272 -v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~-~~l~s~s~Dg~v~iW~~~~~~  345 (357)
T 4g56_B          272 -ITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDH-SKFTTVGWDHKVLHHHLPSEG  345 (357)
T ss_dssp             -EEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSST-TEEEEEETTSCEEEEECC---
T ss_pred             -EEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCC-CEEEEEcCCCeEEEEECCCCC
Confidence             5566668887 68999999999999999999888766 7999999999999 56 799999999999999997643

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1e-42  Score=356.07  Aligned_cols=320  Identities=20%  Similarity=0.291  Sum_probs=259.1

Q ss_pred             hccccccCCCCCc--cccccCCC-cccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeE
Q 042434          183 SQIDSCQYHNSSV--AISLYEDH-CCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTL  259 (517)
Q Consensus       183 ~q~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~  259 (517)
                      ..+..+.|++...  .++...|. ...|+..+.++...+.+|.+.|++++|+|+|++||+|+.|++|++||..++.   .
T Consensus       148 ~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~---~  224 (611)
T 1nr0_A          148 RAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT---K  224 (611)
T ss_dssp             SCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC---E
T ss_pred             CCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCc---E
Confidence            4456667776542  34444444 4556666678888999999999999999999999999999999999987664   3


Q ss_pred             EEEec-------cCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEE----------------------------
Q 042434          260 KHTLR-------SHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHT----------------------------  304 (517)
Q Consensus       260 ~~~~~-------~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~----------------------------  304 (517)
                      ...+.       +|.+.|.+++|+|++++|++++.|++|++||+.+++++..                            
T Consensus       225 ~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~  304 (611)
T 1nr0_A          225 TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANG  304 (611)
T ss_dssp             EEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTC
T ss_pred             eeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCC
Confidence            34553       7999999999999999999999999999999998765543                            


Q ss_pred             ---------------eCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeee--------------------
Q 042434          305 ---------------FGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWR--------------------  349 (517)
Q Consensus       305 ---------------~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~--------------------  349 (517)
                                     +.+|...|.+++|+|++++|++++.|+.  |.+||..+.......                    
T Consensus       305 ~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~--v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~  382 (611)
T 1nr0_A          305 FINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGH--INSWDISTGISNRVFPDVHATMITGIKTTSKGDLF  382 (611)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC--EEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEE
T ss_pred             cEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCc--EEEEECCCCceeeecccCCcceEEEEEECCCCcEE
Confidence                           3478899999999999999999999999  777776532211100                    


Q ss_pred             ------------C--------------------------------------------------cCCCceEEEEEccCCCE
Q 042434          350 ------------G--------------------------------------------------TRIPKVLDLAVTPDGEN  367 (517)
Q Consensus       350 ------------~--------------------------------------------------~~~~~i~~~~~~~~~~~  367 (517)
                                  .                                                  .+...+.+++|+|+|++
T Consensus       383 s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~  462 (611)
T 1nr0_A          383 TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQF  462 (611)
T ss_dssp             EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCE
T ss_pred             EEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCE
Confidence                        0                                                  01124678999999999


Q ss_pred             EEEEeCCCcEEEEECCCce---EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceE--EeCcccCceEE
Q 042434          368 LISVLSDKDIRILNLGTYA---ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFK--YTGHSQNKYVI  442 (517)
Q Consensus       368 l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~--~~~~~~~~~~i  442 (517)
                      +++|+.|+.|++||+.+..   .....|...|.+++|+|+|+++++++.|+.|++||+.+.......  +.+|...   +
T Consensus       463 lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~---V  539 (611)
T 1nr0_A          463 VAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAK---V  539 (611)
T ss_dssp             EEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSC---E
T ss_pred             EEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccc---e
Confidence            9999999999999998754   233568889999999999999999999999999999763233322  2335554   6


Q ss_pred             EeecCCCCCcEEEEecCCCcEEEEecCCCc-ee-EEecCC-CCCeeEEEecCCCCcEEEEeeCCCcEEEeCCC
Q 042434          443 RSCFGGLDGTFIASGSENSQIYIWNRRNSK-PI-EILSGH-SMTVNCVSWNPKRPKMLASASDDHTIRIWGPC  512 (517)
Q Consensus       443 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~-~~~~~h-~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~  512 (517)
                      .++.|+|||++|++|+.|++|++||+.++. .+ ..+.+| ...|++++|+|++ . |++++.|++|++|++.
T Consensus       540 ~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~-~-l~s~~~D~~i~lW~~~  610 (611)
T 1nr0_A          540 ACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET-T-IVSAGQDSNIKFWNVP  610 (611)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETT-E-EEEEETTSCEEEEECC
T ss_pred             eEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCC-E-EEEecCCCCEEEEecc
Confidence            677789999999999999999999998875 34 677889 8999999999999 5 9999999999999974

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.6e-42  Score=333.96  Aligned_cols=285  Identities=24%  Similarity=0.415  Sum_probs=240.5

Q ss_pred             cccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccC------------------CCCEEEEEECCCCCe
Q 042434          220 EHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSH------------------QNPVSFVAWSPDDTK  281 (517)
Q Consensus       220 ~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h------------------~~~v~~l~~s~~~~~  281 (517)
                      +|.+.|+|++|+|+|++||+|+ ++.+++|++.++..   ...+..|                  ...|.+++|+|++++
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~  137 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSL---VARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF  137 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCE---EEEECC-----------------CCCCBEEEEEECTTSSE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCE---EEEecCccccccccccccccccCCCceeEEEEEECCCCCE
Confidence            6999999999999999999986 68999999976643   3334333                  234999999999999


Q ss_pred             EEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEE
Q 042434          282 LLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAV  361 (517)
Q Consensus       282 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~  361 (517)
                      |++|+.|++|++||+.+++.+..+.+|...|.+++|+|++.+|++++.|+.  +.+||..+.........+ ..+.++++
T Consensus       138 l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~--v~iwd~~~~~~~~~~~~~-~~v~~~~~  214 (393)
T 1erj_A          138 LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRT--VRIWDLRTGQCSLTLSIE-DGVTTVAV  214 (393)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE--EEEEETTTTEEEEEEECS-SCEEEEEE
T ss_pred             EEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCc--EEEEECCCCeeEEEEEcC-CCcEEEEE
Confidence            999999999999999999999999999999999999999999999999999  888898765543333222 47999999


Q ss_pred             cc-CCCEEEEEeCCCcEEEEECCCceE--Ee-------eccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-----
Q 042434          362 TP-DGENLISVLSDKDIRILNLGTYAE--RV-------ISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKW-----  426 (517)
Q Consensus       362 ~~-~~~~l~~~~~dg~i~i~d~~~~~~--~~-------~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~-----  426 (517)
                      +| +++++++++.|+.|++||++++..  ..       ..|...|.+++|+|+++++++++.|+.|++||++...     
T Consensus       215 ~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~  294 (393)
T 1erj_A          215 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDS  294 (393)
T ss_dssp             CSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------
T ss_pred             ECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccc
Confidence            99 899999999999999999988762  11       3567889999999999999999999999999997531     


Q ss_pred             ------ccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecC------CCC
Q 042434          427 ------EKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNP------KRP  494 (517)
Q Consensus       427 ------~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~------~~~  494 (517)
                            .....+.+|...   +.++.+++++.+|++|+.||.|++||..+++++..+.+|.+.|.+++|++      ++ 
T Consensus       295 ~~~~~~~~~~~~~~h~~~---v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~-  370 (393)
T 1erj_A          295 KTPNSGTCEVTYIGHKDF---VLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEY-  370 (393)
T ss_dssp             ------CEEEEEECCSSC---EEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTC-
T ss_pred             cCCCCCcceEEEecccCc---EEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCC-
Confidence                  123345566554   55566699999999999999999999999999999999999999999986      56 


Q ss_pred             cEEEEeeCCCcEEEeCCCCCC
Q 042434          495 KMLASASDDHTIRIWGPCQSS  515 (517)
Q Consensus       495 ~~l~s~~~dg~v~iw~~~~~~  515 (517)
                      .+|+||+.||+|++|++...+
T Consensus       371 ~~l~sgs~Dg~i~iW~~~~~~  391 (393)
T 1erj_A          371 NVFATGSGDCKARIWKYKKIA  391 (393)
T ss_dssp             EEEEEEETTSEEEEEEEEEC-
T ss_pred             CEEEEECCCCcEEECcccccC
Confidence            799999999999999987644

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=7.1e-42  Score=348.70  Aligned_cols=311  Identities=26%  Similarity=0.462  Sum_probs=271.2

Q ss_pred             cccccCCCCCc-cccccCCCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEe
Q 042434          185 IDSCQYHNSSV-AISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTL  263 (517)
Q Consensus       185 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~  263 (517)
                      +..+.+.++.. .+....+.....+....+....+.+|.+.|++++|+|++++|++++.||.|++|+....    ....+
T Consensus       265 v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~----~~~~~  340 (577)
T 2ymu_A          265 VNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ----HLQTL  340 (577)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC----EEEEE
T ss_pred             EEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC----eeEEE
Confidence            44455555544 44455555555556778889999999999999999999999999999999999997532    34567


Q ss_pred             ccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCC
Q 042434          264 RSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGN  343 (517)
Q Consensus       264 ~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~  343 (517)
                      .+|...|.+++|+|++++|++++.||.|++||. +++.+..+..|...|.+++|+|++++|++++.|+.  |.+|+..+.
T Consensus       341 ~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~--v~~~~~~~~  417 (577)
T 2ymu_A          341 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT--VKLWNRNGQ  417 (577)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSE--EEEECTTCC
T ss_pred             eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCE--EEEEeCCCC
Confidence            889999999999999999999999999999995 67888889899999999999999999999999999  788888877


Q ss_pred             eeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEc
Q 042434          344 EIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDV  422 (517)
Q Consensus       344 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~  422 (517)
                      .+..+..+. ..|.+++|+|+++++++++.|+.|++||..... .....+...+.+++|+|+++++++++.|+.|++||.
T Consensus       418 ~~~~~~~~~-~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~  496 (577)
T 2ymu_A          418 LLQTLTGHS-SSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR  496 (577)
T ss_dssp             EEEEEECCS-SCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET
T ss_pred             EEEEecCCC-CCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC
Confidence            777766554 589999999999999999999999999986655 556678889999999999999999999999999996


Q ss_pred             CCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeC
Q 042434          423 AGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASD  502 (517)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~  502 (517)
                      .+  .....+.+|...   +..+.|+|+|++|++++.||.|++||. +++++.++.+|.+.|++++|+|++ .+|+|++.
T Consensus       497 ~~--~~~~~~~~h~~~---v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg-~~l~s~~~  569 (577)
T 2ymu_A          497 NG--QLLQTLTGHSSS---VRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDG-QTIASASS  569 (577)
T ss_dssp             TS--CEEEEEECCSSC---EEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTS-SCEEEEET
T ss_pred             CC--CEEEEEeCCCCC---EEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCC-CEEEEEeC
Confidence            54  566778888766   566677999999999999999999995 688999999999999999999999 78999999


Q ss_pred             CCcEEEeC
Q 042434          503 DHTIRIWG  510 (517)
Q Consensus       503 dg~v~iw~  510 (517)
                      |++|++||
T Consensus       570 D~~i~~Wd  577 (577)
T 2ymu_A          570 DKTVKLWN  577 (577)
T ss_dssp             TSCEEEEC
T ss_pred             CCEEEEeC
Confidence            99999997

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.2e-41  Score=321.13  Aligned_cols=295  Identities=21%  Similarity=0.292  Sum_probs=249.7

Q ss_pred             ccEEEeccccCcEEEEEECCC-CCEEEEeeCCCcEEEEEecCCCe--eeEEEEeccCCCCEEEEEECCCCCeEEEEeCCC
Q 042434          213 ETVQILTEHKNEVWFVQFSNN-GEYLASSSSDCSAIIWKVLEDSK--LTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAE  289 (517)
Q Consensus       213 ~~~~~l~~h~~~v~~~~~s~~-~~~l~t~~~dg~i~iw~~~~~~~--~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg  289 (517)
                      ....+|+||.+.|++++|+|+ +++||||+.||+|+|||+.+...  ......+.+|...|.+++|+|++++|++++.|+
T Consensus        29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~  108 (340)
T 4aow_A           29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG  108 (340)
T ss_dssp             EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccc
Confidence            455679999999999999997 68999999999999999975432  345678899999999999999999999999999


Q ss_pred             eEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeE-eeeCcCCCceEEEEEccCC--C
Q 042434          290 VLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIK-AWRGTRIPKVLDLAVTPDG--E  366 (517)
Q Consensus       290 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~--~  366 (517)
                      .|++|+...+........+...+....+++++..+++++.|+.  +.+|+....... .....+...+..++|++++  .
T Consensus       109 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~--~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  186 (340)
T 4aow_A          109 TLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKT--IKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNP  186 (340)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSC--EEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSC
T ss_pred             cceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCe--EEEEEeCCCceEEEEeccccCcccceEEccCCCCc
Confidence            9999999999988888888999999999999999999999999  888888765443 3334455689999998865  4


Q ss_pred             EEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEe
Q 042434          367 NLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRS  444 (517)
Q Consensus       367 ~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~  444 (517)
                      .+++++.|+.|++||+++..  .....+..+|.+++|+|+++++++++.|+.|++||+++. .....+..+..    +..
T Consensus       187 ~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~-~~~~~~~~~~~----v~~  261 (340)
T 4aow_A          187 IIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG-KHLYTLDGGDI----INA  261 (340)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT-EEEEEEECSSC----EEE
T ss_pred             EEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC-ceeeeecCCce----EEe
Confidence            78899999999999999887  445567889999999999999999999999999999876 55555554432    566


Q ss_pred             ecCCCCCcEEEEecCCCcEEEEecCCCceeEEec---------CCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434          445 CFGGLDGTFIASGSENSQIYIWNRRNSKPIEILS---------GHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS  515 (517)
Q Consensus       445 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---------~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~  515 (517)
                      +.++|++.++ +++.|+.|++||++++..+..+.         +|...|++++|+|++ .+|++|+.||.|+|||+.+|+
T Consensus       262 ~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          262 LCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADG-QTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             EEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTS-SEEEEEETTSCEEEEEEEC--
T ss_pred             eecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEeCCCcC
Confidence            6678887655 55679999999999887766654         588999999999999 799999999999999999986


Q ss_pred             C
Q 042434          516 E  516 (517)
Q Consensus       516 ~  516 (517)
                      +
T Consensus       340 r  340 (340)
T 4aow_A          340 R  340 (340)
T ss_dssp             -
T ss_pred             C
Confidence            4

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-41  Score=321.02  Aligned_cols=293  Identities=20%  Similarity=0.293  Sum_probs=228.8

Q ss_pred             cccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEe-cc-CCCCEEEEEECCCCCeEEEEeCCC
Q 042434          212 TETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTL-RS-HQNPVSFVAWSPDDTKLLTCGNAE  289 (517)
Q Consensus       212 ~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~-~~-h~~~v~~l~~s~~~~~l~s~~~dg  289 (517)
                      .+++..+.+|.+.|++++|+|+  +||+|+.|++|++|++..+. ......+ .+ |...|.+++|+|++++|++|+.|+
T Consensus         4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~-~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~   80 (330)
T 2hes_X            4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDD-FTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS   80 (330)
T ss_dssp             CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSC-CEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTS
T ss_pred             cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCC-eEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCC
Confidence            4567889999999999999998  99999999999999997542 2344455 44 999999999999999999999999


Q ss_pred             eEEEEECCC-------CcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC--C--eeEeeeCcCCCceEE
Q 042434          290 VLKLWDVET-------GICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG--N--EIKAWRGTRIPKVLD  358 (517)
Q Consensus       290 ~i~iwd~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~--~--~~~~~~~~~~~~i~~  358 (517)
                      +|++||+..       .++...+.+|...|.+++|+|++++|++|+.|+.  |.+|+...  .  ........+...|.+
T Consensus        81 ~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~--v~iwd~~~~~~~~~~~~~~~~h~~~v~~  158 (330)
T 2hes_X           81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKS--VWIWETDESGEEYECISVLQEHSQDVKH  158 (330)
T ss_dssp             CEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSC--EEEEECCTTCCCCEEEEEECCCSSCEEE
T ss_pred             cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCE--EEEEeccCCCCCeEEEEEeccCCCceEE
Confidence            999999853       4567788899999999999999999999999999  77777732  1  222233345568999


Q ss_pred             EEEccCCCEEEEEeCCCcEEEEECCCce----EEeeccCCCeeEEEEcCC--CCEEEEEeCCCeEEEEEcCCCC------
Q 042434          359 LAVTPDGENLISVLSDKDIRILNLGTYA----ERVISEEHPITSLSVSVD--CKNFIVNLNSQEIHMWDVAGKW------  426 (517)
Q Consensus       359 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~i~~~~~s~~--~~~l~~~~~d~~i~~~d~~~~~------  426 (517)
                      ++|+|++.+|++++.|++|++||..+..    .....|...|.+++|+|+  +..+++++.|+.|++||+....      
T Consensus       159 v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~  238 (330)
T 2hes_X          159 VIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQE  238 (330)
T ss_dssp             EEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEE
T ss_pred             EEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccce
Confidence            9999999999999999999999987652    345568889999999998  6789999999999999986431      


Q ss_pred             -ccceEEeC-cccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCc--eeEE-ecCCCC-CeeEEEecC--CCCcEEE
Q 042434          427 -EKPFKYTG-HSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSK--PIEI-LSGHSM-TVNCVSWNP--KRPKMLA  498 (517)
Q Consensus       427 -~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~-~~~h~~-~v~~v~~~~--~~~~~l~  498 (517)
                       .....+.+ |...   +..+.|++++ +|++++.||.|++||..+++  .... +.+|.. .|++++|+|  ++ .+|+
T Consensus       239 ~~~~~~~~~~h~~~---v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~-~~la  313 (330)
T 2hes_X          239 WVCEAILPDVHKRQ---VYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGK-TILA  313 (330)
T ss_dssp             EEEEEECCSCCSSC---EEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC------CCEE
T ss_pred             eEEeeecccccccc---eEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCc-eEEE
Confidence             11122222 4443   5555567655 89999999999999998874  3333 467887 899999999  56 7999


Q ss_pred             EeeCCCcEEEeCCCCC
Q 042434          499 SASDDHTIRIWGPCQS  514 (517)
Q Consensus       499 s~~~dg~v~iw~~~~~  514 (517)
                      ||+.||+|++|++...
T Consensus       314 s~s~Dg~v~~W~~~~~  329 (330)
T 2hes_X          314 TGGDDGIVNFWSLEKA  329 (330)
T ss_dssp             EEETTSEEEEEEC---
T ss_pred             EecCCCcEEEEEeccC
Confidence            9999999999998753

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=7.8e-42  Score=349.55  Aligned_cols=321  Identities=19%  Similarity=0.224  Sum_probs=260.9

Q ss_pred             cccccCCCCCc-cccccCCCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEe
Q 042434          185 IDSCQYHNSSV-AISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTL  263 (517)
Q Consensus       185 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~  263 (517)
                      .....|.++.. .+....+....|+.........+.+|.+.|++++|+|+|++||+|+.||+|+|||+.++.. .....+
T Consensus        21 ~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~-~~~~~~   99 (611)
T 1nr0_A           21 AVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH-ILKTTI   99 (611)
T ss_dssp             CCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC-CEEEEE
T ss_pred             eeEEeeCCCCCEEEeCCCCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcc-eeeEee
Confidence            34445665554 2223334444555556778889999999999999999999999999999999999865433 344577


Q ss_pred             ccCCCCEEEEEECCCCCeEEEEeCC----CeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCC-eEEEeeCCCceeEEEE
Q 042434          264 RSHQNPVSFVAWSPDDTKLLTCGNA----EVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSK-RLVCGSSDTEKGIFMC  338 (517)
Q Consensus       264 ~~h~~~v~~l~~s~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~d~~v~i~~~  338 (517)
                      .+|.++|.+++|+|++++|++++.+    +.|++||  +++....+.+|...|.+++|+|++. .|++|+.|++  +.+|
T Consensus       100 ~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~--v~lw  175 (611)
T 1nr0_A          100 PVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNT--VAIF  175 (611)
T ss_dssp             ECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSC--EEEE
T ss_pred             cccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCe--EEEE
Confidence            8899999999999999999998865    3677777  5667778889999999999999987 5999999999  7788


Q ss_pred             eCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEee--------ccCCCeeEEEEcCCCCEEE
Q 042434          339 DCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVI--------SEEHPITSLSVSVDCKNFI  409 (517)
Q Consensus       339 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~--------~~~~~i~~~~~s~~~~~l~  409 (517)
                      +............|...|.+++|+|+++++++++.|++|++||+.++. ....        .|...|.+++|+|++++++
T Consensus       176 d~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~  255 (611)
T 1nr0_A          176 EGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIA  255 (611)
T ss_dssp             ETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEE
T ss_pred             ECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEE
Confidence            877655444445566789999999999999999999999999998776 2222        5788999999999999999


Q ss_pred             EEeCCCeEEEEEcCCCCccceEEeCccc-CceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEE
Q 042434          410 VNLNSQEIHMWDVAGKWEKPFKYTGHSQ-NKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVS  488 (517)
Q Consensus       410 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~  488 (517)
                      +++.|+.|++||+.+. .....+..+.. ........+   ++..+++++.||.+++||..++++...+.+|...|++++
T Consensus       256 s~s~D~~v~lWd~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~  331 (611)
T 1nr0_A          256 SASADKTIKIWNVATL-KVEKTIPVGTRIEDQQLGIIW---TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALS  331 (611)
T ss_dssp             EEETTSEEEEEETTTT-EEEEEEECCSSGGGCEEEEEE---CSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred             EEeCCCeEEEEeCCCC-ceeeeecCCCCccceeEEEEE---cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEE
Confidence            9999999999999876 44444443221 111222222   678899999999999999999999999999999999999


Q ss_pred             ecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434          489 WNPKRPKMLASASDDHTIRIWGPCQSS  515 (517)
Q Consensus       489 ~~~~~~~~l~s~~~dg~v~iw~~~~~~  515 (517)
                      |+|++ .+|++++.||+|++||+.+++
T Consensus       332 ~spdg-~~l~s~s~D~~v~~Wd~~~~~  357 (611)
T 1nr0_A          332 SSADG-KTLFSADAEGHINSWDISTGI  357 (611)
T ss_dssp             ECTTS-SEEEEEETTSCEEEEETTTCC
T ss_pred             EeCCC-CEEEEEeCCCcEEEEECCCCc
Confidence            99999 799999999999999998764

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.3e-40  Score=315.23  Aligned_cols=316  Identities=16%  Similarity=0.158  Sum_probs=260.8

Q ss_pred             ccccCCCCCc--cccccCCCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEe
Q 042434          186 DSCQYHNSSV--AISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTL  263 (517)
Q Consensus       186 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~  263 (517)
                      ..+.+.++..  .+....+....+............+|.+.|++++|+|++++|++++ ||.|++|++.++........+
T Consensus        13 ~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~   91 (337)
T 1gxr_A           13 YSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQL   91 (337)
T ss_dssp             CEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEE
T ss_pred             eEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecc
Confidence            3445555555  2333333333344333344444558999999999999999999998 999999999876543333443


Q ss_pred             c--cCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc--EEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEe
Q 042434          264 R--SHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI--CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCD  339 (517)
Q Consensus       264 ~--~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~  339 (517)
                      .  +|...|.+++|+|++++|++++.||.|++||+.+++  ....+..|...|.+++|+|+++++++++.||.  +.+|+
T Consensus        92 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~--v~~~d  169 (337)
T 1gxr_A           92 DCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGN--IAVWD  169 (337)
T ss_dssp             ECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSC--EEEEE
T ss_pred             cccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCc--EEEEe
Confidence            3  799999999999999999999999999999999887  56677789999999999999999999999999  88899


Q ss_pred             CCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEE
Q 042434          340 CDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIH  418 (517)
Q Consensus       340 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~  418 (517)
                      ..+.........+...+.+++|+|+++.+++++.||.|++||+++.. .....+...+.+++|+|+++.+++++.++.|+
T Consensus       170 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~  249 (337)
T 1gxr_A          170 LHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVE  249 (337)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             CCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEE
Confidence            88665544444455689999999999999999999999999999887 55566788999999999999999999999999


Q ss_pred             EEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEE
Q 042434          419 MWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLA  498 (517)
Q Consensus       419 ~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~  498 (517)
                      +||+.+..  ...+..|...   +..+.++|+++++++++.||.|++||+.+++.+... .|...|.+++|+|++ .+|+
T Consensus       250 ~~~~~~~~--~~~~~~~~~~---v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~-~~l~  322 (337)
T 1gxr_A          250 VLHVNKPD--KYQLHLHESC---VLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDD-KYIV  322 (337)
T ss_dssp             EEETTSSC--EEEECCCSSC---EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTS-CEEE
T ss_pred             EEECCCCC--eEEEcCCccc---eeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCC-CEEE
Confidence            99998752  3455555554   566667999999999999999999999999888655 488999999999999 7999


Q ss_pred             EeeCCCcEEEeCC
Q 042434          499 SASDDHTIRIWGP  511 (517)
Q Consensus       499 s~~~dg~v~iw~~  511 (517)
                      +++.||.|++|++
T Consensus       323 ~~~~dg~i~iw~~  335 (337)
T 1gxr_A          323 TGSGDKKATVYEV  335 (337)
T ss_dssp             EEETTSCEEEEEE
T ss_pred             EecCCCeEEEEEE
Confidence            9999999999986

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.2e-40  Score=315.83  Aligned_cols=291  Identities=21%  Similarity=0.257  Sum_probs=249.2

Q ss_pred             cEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEE
Q 042434          214 TVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKL  293 (517)
Q Consensus       214 ~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i  293 (517)
                      ....+.+|.+.|++++|+|++++|++|+.||.|++||+.++   .....+.+|...|.+++|+|++++|++++.||.|++
T Consensus        24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~i  100 (369)
T 3zwl_B           24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG---ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKL  100 (369)
T ss_dssp             EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEE
T ss_pred             ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc---hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence            45568999999999999999999999999999999999765   455788899999999999999999999999999999


Q ss_pred             EECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCC-----CceeEEEEeCCCC----------eeEeeeCcC-CCceE
Q 042434          294 WDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSD-----TEKGIFMCDCDGN----------EIKAWRGTR-IPKVL  357 (517)
Q Consensus       294 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-----~~v~i~~~~~~~~----------~~~~~~~~~-~~~i~  357 (517)
                      ||+.+++.+..+. +...|.+++|+|+++++++++.+     +.+.+|.......          .......+. ...+.
T Consensus       101 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (369)
T 3zwl_B          101 WDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAAT  179 (369)
T ss_dssp             EETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEE
T ss_pred             EECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCcccee
Confidence            9999999998886 88899999999999999999998     9844444433321          111122111 12799


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEECCC-ce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeC
Q 042434          358 DLAVTPDGENLISVLSDKDIRILNLGT-YA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTG  434 (517)
Q Consensus       358 ~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~  434 (517)
                      +++|+|+++.+++++.||.|++||+++ ..  .....+...+.+++|+|+++++++++.|+.|++||+++. .....+. 
T Consensus       180 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~-  257 (369)
T 3zwl_B          180 VAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTL-QVLKKYE-  257 (369)
T ss_dssp             EEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-CEEEEEE-
T ss_pred             EEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCC-ceeeeec-
Confidence            999999999999999999999999998 44  445567889999999999999999999999999999876 4445554 


Q ss_pred             cccCceEEEeecCCCCCcEEEEecCCC--------------cEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEe
Q 042434          435 HSQNKYVIRSCFGGLDGTFIASGSENS--------------QIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASA  500 (517)
Q Consensus       435 ~~~~~~~i~~~~~s~~~~~l~~~~~dg--------------~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~  500 (517)
                      +..   .+..+.++|+++++++++.++              .+++||..+++++..+.+|...|++++|+|++ .+|+++
T Consensus       258 ~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~  333 (369)
T 3zwl_B          258 TDC---PLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQG-TSYASG  333 (369)
T ss_dssp             CSS---CEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-SEEEEE
T ss_pred             CCC---CceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCC-CEEEEE
Confidence            222   255666799999999999988              89999999999999999999999999999999 799999


Q ss_pred             eCCCcEEEeCCCCC
Q 042434          501 SDDHTIRIWGPCQS  514 (517)
Q Consensus       501 ~~dg~v~iw~~~~~  514 (517)
                      +.||.|++|++.++
T Consensus       334 ~~dg~v~iw~~~~~  347 (369)
T 3zwl_B          334 GEDGFIRLHHFEKS  347 (369)
T ss_dssp             ETTSEEEEEEECHH
T ss_pred             cCCCeEEEEECccc
Confidence            99999999998754

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=9.7e-40  Score=332.93  Aligned_cols=313  Identities=26%  Similarity=0.444  Sum_probs=269.9

Q ss_pred             cccccCCCCCc-cccccCCCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEe
Q 042434          185 IDSCQYHNSSV-AISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTL  263 (517)
Q Consensus       185 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~  263 (517)
                      +..+.+.++.. .+....+.....+....+.+..+.+|...|++++|+|++++|++++.|+.|++|+.. +   .....+
T Consensus       224 v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~---~~~~~~  299 (577)
T 2ymu_A          224 VRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-G---QLLQTL  299 (577)
T ss_dssp             EEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-S---CEEEEE
T ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-C---cEEEEE
Confidence            34444555443 444455555555567788899999999999999999999999999999999999964 2   345678


Q ss_pred             ccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCC
Q 042434          264 RSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGN  343 (517)
Q Consensus       264 ~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~  343 (517)
                      .+|...|.+++|+|+++.+++++.||+|++||.. +..+..+..|...|.+++|+|+++++++++.|+.  +.+|+..+.
T Consensus       300 ~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~--v~~~~~~~~  376 (577)
T 2ymu_A          300 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKT--VKLWNRNGQ  376 (577)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSE--EEEEETTCC
T ss_pred             ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCE--EEEEcCCCC
Confidence            8999999999999999999999999999999975 4556778899999999999999999999999999  778888877


Q ss_pred             eeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEc
Q 042434          344 EIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDV  422 (517)
Q Consensus       344 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~  422 (517)
                      .+..+..+. ..|.+++|+|+++++++++.|+.|++||..... .....+...+.+++|+|+++++++++.|+.|++||.
T Consensus       377 ~~~~~~~~~-~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~  455 (577)
T 2ymu_A          377 LLQTLTGHS-SSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR  455 (577)
T ss_dssp             EEEEEECCS-SCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             EEEEecCCC-CCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence            777766554 589999999999999999999999999976554 556678889999999999999999999999999997


Q ss_pred             CCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeC
Q 042434          423 AGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASD  502 (517)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~  502 (517)
                      ..  .....+.+|...   +.++.++|++++|++++.|+.|++||. +++++..+.+|...|++++|+|++ .+|++++.
T Consensus       456 ~~--~~~~~~~~~~~~---v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg-~~l~s~~~  528 (577)
T 2ymu_A          456 NG--QLLQTLTGHSSS---VRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDG-QTIASASD  528 (577)
T ss_dssp             TS--CEEEEEECCSSC---EEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTS-SCEEEEET
T ss_pred             CC--CEEEEEcCCCCC---EEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCC-CEEEEEEC
Confidence            54  456677777765   666777999999999999999999995 688999999999999999999999 79999999


Q ss_pred             CCcEEEeCCC
Q 042434          503 DHTIRIWGPC  512 (517)
Q Consensus       503 dg~v~iw~~~  512 (517)
                      ||.|++||..
T Consensus       529 dg~v~lwd~~  538 (577)
T 2ymu_A          529 DKTVKLWNRN  538 (577)
T ss_dssp             TSEEEEECTT
T ss_pred             cCEEEEEeCC
Confidence            9999999964

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=3.7e-40  Score=342.78  Aligned_cols=292  Identities=22%  Similarity=0.315  Sum_probs=246.3

Q ss_pred             ccEEEeccccCcEEEEEECCC-CCEEEEeeCCCcEEEEEecCCCe--eeEEEEeccCCCCEEEEEECCCCCeEEEEeCCC
Q 042434          213 ETVQILTEHKNEVWFVQFSNN-GEYLASSSSDCSAIIWKVLEDSK--LTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAE  289 (517)
Q Consensus       213 ~~~~~l~~h~~~v~~~~~s~~-~~~l~t~~~dg~i~iw~~~~~~~--~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg  289 (517)
                      .....+.+|.+.|++++|+|+ +++|+||+.||+|++|++.....  ......+.+|...|.+++|+|++++|++|+.||
T Consensus       373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg  452 (694)
T 3dm0_A          373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG  452 (694)
T ss_dssp             EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence            345578999999999999986 47999999999999999975432  234567889999999999999999999999999


Q ss_pred             eEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeee---CcCCCceEEEEEccCC-
Q 042434          290 VLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWR---GTRIPKVLDLAVTPDG-  365 (517)
Q Consensus       290 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~-  365 (517)
                      +|++||+.++.+...+.+|...|.+++|+|++++|++|+.|++  |.+|+..+.......   ..|...|.+++|+|++ 
T Consensus       453 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~--i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  530 (694)
T 3dm0_A          453 ELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRT--IKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTL  530 (694)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSC--EEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSS
T ss_pred             cEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCE--EEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCC
Confidence            9999999999999999999999999999999999999999999  888888765544432   2355679999999987 


Q ss_pred             -CEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEE
Q 042434          366 -ENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVI  442 (517)
Q Consensus       366 -~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i  442 (517)
                       ..+++++.|+.|++||+++..  .....|...|.+++|+|+++++++++.|+.|++||++++ .....+..+.    .+
T Consensus       531 ~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~-~~~~~~~~~~----~v  605 (694)
T 3dm0_A          531 QPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG-KKLYSLEANS----VI  605 (694)
T ss_dssp             SCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTT-EEEECCBCSS----CE
T ss_pred             cceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-ceEEEecCCC----cE
Confidence             589999999999999999877  445568889999999999999999999999999999876 4444443322    36


Q ss_pred             EeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCC-------------------CCeeEEEecCCCCcEEEEeeCC
Q 042434          443 RSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHS-------------------MTVNCVSWNPKRPKMLASASDD  503 (517)
Q Consensus       443 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~-------------------~~v~~v~~~~~~~~~l~s~~~d  503 (517)
                      .++.++|++.++++++ ++.|++||+.+++.+..+..+.                   ..+++++|+|++ .+|++|+.|
T Consensus       606 ~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg-~~l~sgs~D  683 (694)
T 3dm0_A          606 HALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADG-STLFSGYTD  683 (694)
T ss_dssp             EEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTS-SEEEEEETT
T ss_pred             EEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCC-CEEEEEcCC
Confidence            6777799999888776 5569999999998887775331                   137899999999 799999999


Q ss_pred             CcEEEeCCCC
Q 042434          504 HTIRIWGPCQ  513 (517)
Q Consensus       504 g~v~iw~~~~  513 (517)
                      |+|++|++..
T Consensus       684 g~i~iW~i~~  693 (694)
T 3dm0_A          684 GVIRVWGIGR  693 (694)
T ss_dssp             SEEEEEEC--
T ss_pred             CeEEEEeccC
Confidence            9999999863

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=5e-40  Score=317.27  Aligned_cols=292  Identities=14%  Similarity=0.187  Sum_probs=242.4

Q ss_pred             cccEEEeccccCcEEEEEECCCC-CEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECC-CCCeEEEEeCCC
Q 042434          212 TETVQILTEHKNEVWFVQFSNNG-EYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP-DDTKLLTCGNAE  289 (517)
Q Consensus       212 ~~~~~~l~~h~~~v~~~~~s~~~-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg  289 (517)
                      ......+.+|.+.|++++|+|++ ++|++|+.||.|+|||+.++... ......+|...|.+++|+| ++++|++++.|+
T Consensus        63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~  141 (383)
T 3ei3_B           63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKT-SFIQGMGPGDAITGMKFNQFNTNQLFVSSIRG  141 (383)
T ss_dssp             CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCE-EEECCCSTTCBEEEEEEETTEEEEEEEEETTT
T ss_pred             cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccc-eeeecCCcCCceeEEEeCCCCCCEEEEEeCCC
Confidence            45677889999999999999999 99999999999999999866432 2223347999999999999 779999999999


Q ss_pred             eEEEEECCCCcEEEEeCCC---CCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCC
Q 042434          290 VLKLWDVETGICKHTFGDH---GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGE  366 (517)
Q Consensus       290 ~i~iwd~~~~~~~~~~~~~---~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  366 (517)
                      .|++||+.+ .....+..+   ...|.+++|+|++++|++++.|+.  |++||..+..+..+..+. ..|.+++|+|+++
T Consensus       142 ~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~--i~i~d~~~~~~~~~~~h~-~~v~~~~~~~~~~  217 (383)
T 3ei3_B          142 ATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGR--LLLLGLDGHEIFKEKLHK-AKVTHAEFNPRCD  217 (383)
T ss_dssp             EEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSE--EEEEETTSCEEEEEECSS-SCEEEEEECSSCT
T ss_pred             EEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCC--EEEEECCCCEEEEeccCC-CcEEEEEECCCCC
Confidence            999999986 455555433   488999999999999999999999  888898877777776554 5899999999999


Q ss_pred             -EEEEEeCCCcEEEEECCC----ce-EEeeccCCCeeEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccC-
Q 042434          367 -NLISVLSDKDIRILNLGT----YA-ERVISEEHPITSLSVSV-DCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQN-  438 (517)
Q Consensus       367 -~l~~~~~dg~i~i~d~~~----~~-~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~-  438 (517)
                       .+++++.|+.|++||+++    .. .....+...+.+++|+| +++++++++.|+.|++||+++. .....+.+|... 
T Consensus       218 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~  296 (383)
T 3ei3_B          218 WLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDW-SKPDQIIIHPHRQ  296 (383)
T ss_dssp             TEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBT-TSCSEEEECCBCC
T ss_pred             CEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCC-ccccccccccccc
Confidence             999999999999999987    33 44457889999999999 9999999999999999999876 444444433211 


Q ss_pred             ------c-------eEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecC--CCCCeeEEEecCCCCcEEEEeeCC
Q 042434          439 ------K-------YVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSG--HSMTVNCVSWNPKRPKMLASASDD  503 (517)
Q Consensus       439 ------~-------~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~v~~~~~~~~~l~s~~~d  503 (517)
                            .       ..+..+.++|++++  +|+.||.|++||+.+++++..+.+  |...+..++|+|++ .+|++++ |
T Consensus       297 ~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g-~~l~s~s-d  372 (383)
T 3ei3_B          297 FQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTG-DVLASGM-G  372 (383)
T ss_dssp             CTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTS-SEEEEEE-T
T ss_pred             cccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCc-cEEEEec-C
Confidence                  0       11222445677776  888999999999999999999987  45778888999999 7899997 9


Q ss_pred             CcEEEeCCCC
Q 042434          504 HTIRIWGPCQ  513 (517)
Q Consensus       504 g~v~iw~~~~  513 (517)
                      |.|++|++++
T Consensus       373 ~~i~iw~~~~  382 (383)
T 3ei3_B          373 FNILIWNRED  382 (383)
T ss_dssp             TEEEEEECC-
T ss_pred             CcEEEEecCC
Confidence            9999999975

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=6.4e-40  Score=305.63  Aligned_cols=253  Identities=18%  Similarity=0.309  Sum_probs=218.1

Q ss_pred             eEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEE
Q 042434          258 TLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM  337 (517)
Q Consensus       258 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~  337 (517)
                      ....++.+|.+.|.+++|+|++++|++++.||+|++||+.++..+..+..|..+|.+++|+|++++|++|+.|+.  |.+
T Consensus         4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~--i~v   81 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFR--IRV   81 (304)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSE--EEE
T ss_pred             eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCE--EEE
Confidence            345678899999999999999999999999999999999999999999999999999999999999999999999  888


Q ss_pred             EeCCCCe-eEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce---EEeeccCCCeeEEEEcC-CCCEEEEEe
Q 042434          338 CDCDGNE-IKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA---ERVISEEHPITSLSVSV-DCKNFIVNL  412 (517)
Q Consensus       338 ~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~s~-~~~~l~~~~  412 (517)
                      ||..... +..+.. |...|.+++|+|+++++++++.|++|++||+++..   .....|...|.+++|+| ++..+++++
T Consensus        82 wd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs  160 (304)
T 2ynn_A           82 FNYNTGEKVVDFEA-HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC  160 (304)
T ss_dssp             EETTTCCEEEEEEC-CSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEE
T ss_pred             EECCCCcEEEEEeC-CCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEe
Confidence            8887544 444444 45689999999999999999999999999998763   34557888999999999 678999999


Q ss_pred             CCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCC
Q 042434          413 NSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPK  492 (517)
Q Consensus       413 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~  492 (517)
                      .|+.|++||++..........++......+... ..+++.+|++|+.||+|++||+++++++.++.+|...|.+++|+|+
T Consensus       161 ~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~  239 (304)
T 2ynn_A          161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYY-PLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT  239 (304)
T ss_dssp             TTSEEEEEETTCSSCSEEEECCCTTCEEEEEEC-CSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSS
T ss_pred             CCCeEEEEECCCCCccceeccCCcCcEEEEEEE-EcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCC
Confidence            999999999977633333333443443333222 2458899999999999999999999999999999999999999999


Q ss_pred             CCcEEEEeeCCCcEEEeCCCCCC
Q 042434          493 RPKMLASASDDHTIRIWGPCQSS  515 (517)
Q Consensus       493 ~~~~l~s~~~dg~v~iw~~~~~~  515 (517)
                      + .+|++|+.||+|++||+.+++
T Consensus       240 ~-~~l~s~s~Dg~i~iWd~~~~~  261 (304)
T 2ynn_A          240 L-PIIISGSEDGTLKIWNSSTYK  261 (304)
T ss_dssp             S-SEEEEEETTSCEEEEETTTCC
T ss_pred             C-CEEEEEcCCCeEEEEECCCCc
Confidence            9 699999999999999998765

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=3.3e-40  Score=320.19  Aligned_cols=294  Identities=14%  Similarity=0.106  Sum_probs=247.4

Q ss_pred             ccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCC---eeeEEEEeccCCCCEEEEEECCC----C---CeE
Q 042434          213 ETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDS---KLTLKHTLRSHQNPVSFVAWSPD----D---TKL  282 (517)
Q Consensus       213 ~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~---~~~~~~~~~~h~~~v~~l~~s~~----~---~~l  282 (517)
                      .....+.+|.+.|++++|+|  ++|++|+.||.|++|++.++.   .......+.+|...|.+++|+|+    +   ++|
T Consensus         7 ~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l   84 (397)
T 1sq9_A            7 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV   84 (397)
T ss_dssp             EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred             hhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence            45677889999999999999  799999999999999997664   11234667789999999999999    9   999


Q ss_pred             EEEeCCCeEEEEECCCCcE-----EEEeCCC-----CCceEEEEEe----CCCCe-EEEeeCCCceeEEEEeCCC-----
Q 042434          283 LTCGNAEVLKLWDVETGIC-----KHTFGDH-----GFIVSSCAWF----PDSKR-LVCGSSDTEKGIFMCDCDG-----  342 (517)
Q Consensus       283 ~s~~~dg~i~iwd~~~~~~-----~~~~~~~-----~~~v~~i~~~----~~~~~-l~~~~~d~~v~i~~~~~~~-----  342 (517)
                      ++++.||.|++||+.+++.     ...+..|     ...|.+++|+    |++.+ |++++.||.  |.+|+...     
T Consensus        85 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~--i~iwd~~~~~~~~  162 (397)
T 1sq9_A           85 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGT--TYIWKFHPFADES  162 (397)
T ss_dssp             EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSC--EEEEEEESSSSHH
T ss_pred             EEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCc--EEEEeCCcccccc
Confidence            9999999999999998887     8888888     5999999999    99999 999999999  55555543     


Q ss_pred             --CeeE-----eee------CcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeec---c---CCCeeEEEE
Q 042434          343 --NEIK-----AWR------GTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVIS---E---EHPITSLSV  401 (517)
Q Consensus       343 --~~~~-----~~~------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~---~---~~~i~~~~~  401 (517)
                        ..+.     .+.      ..+...+.+++|+|++ .+++++.||.|++||+++..  .....   +   ...+.+++|
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~  241 (397)
T 1sq9_A          163 NSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF  241 (397)
T ss_dssp             HHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEE
T ss_pred             ccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEE
Confidence              2222     332      3345689999999999 99999999999999999877  33334   5   889999999


Q ss_pred             cCCCCEEEEEeCC---CeEEEEEcCCCCccceEEeC-------------cccCceEEEeecCCCCCcEEEEecCCCcEEE
Q 042434          402 SVDCKNFIVNLNS---QEIHMWDVAGKWEKPFKYTG-------------HSQNKYVIRSCFGGLDGTFIASGSENSQIYI  465 (517)
Q Consensus       402 s~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~-------------~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i  465 (517)
                      +|+++++++++.|   +.|++||+++. .....+.+             |...   +..+.|+|++++|++++.||.|++
T Consensus       242 ~~~~~~l~~~~~d~~~g~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~~~~dg~i~i  317 (397)
T 1sq9_A          242 SPQGSLLAIAHDSNSFGCITLYETEFG-ERIGSLSVPTHSSQASLGEFAHSSW---VMSLSFNDSGETLCSAGWDGKLRF  317 (397)
T ss_dssp             CSSTTEEEEEEEETTEEEEEEEETTTC-CEEEEECBC--------CCBSBSSC---EEEEEECSSSSEEEEEETTSEEEE
T ss_pred             CCCCCEEEEEecCCCCceEEEEECCCC-cccceeccCcccccccccccccCCc---EEEEEECCCCCEEEEEeCCCeEEE
Confidence            9999999999999   99999999876 56666666             5554   666677999999999999999999


Q ss_pred             EecCCCceeEEec------CC---------------CCCeeEEEecCCCC---------cEEEEeeCCCcEEEeCCCCCC
Q 042434          466 WNRRNSKPIEILS------GH---------------SMTVNCVSWNPKRP---------KMLASASDDHTIRIWGPCQSS  515 (517)
Q Consensus       466 wd~~~~~~~~~~~------~h---------------~~~v~~v~~~~~~~---------~~l~s~~~dg~v~iw~~~~~~  515 (517)
                      ||+.+++++..+.      +|               ...|++++|+|++.         .+|++++.||.|++|++.+|+
T Consensus       318 wd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          318 WDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             EETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             EEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence            9999999999999      88               99999999999973         489999999999999998774

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=7.6e-40  Score=312.72  Aligned_cols=296  Identities=11%  Similarity=0.182  Sum_probs=240.8

Q ss_pred             ccEEEeccccCcEEEEEECCCCCEE-EEeeC---CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCC---CCeEEEE
Q 042434          213 ETVQILTEHKNEVWFVQFSNNGEYL-ASSSS---DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPD---DTKLLTC  285 (517)
Q Consensus       213 ~~~~~l~~h~~~v~~~~~s~~~~~l-~t~~~---dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~---~~~l~s~  285 (517)
                      .....+.+|.+.|++++|+|++..+ ++|+.   ||.|++|++.++... . ....+|...|.+++|+|+   +++|+++
T Consensus         9 ~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~-~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~   86 (357)
T 3i2n_A            9 IIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLK-L-LREIEKAKPIKCGTFGATSLQQRYLATG   86 (357)
T ss_dssp             EEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEE-E-EEEEEESSCEEEEECTTCCTTTCCEEEE
T ss_pred             HhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccc-c-eeeecccCcEEEEEEcCCCCCCceEEEe
Confidence            3455668899999999999998655 56665   999999999866432 1 223368999999999998   6999999


Q ss_pred             eCCCeEEEEECCCCc-EEEEeCCCCCceEEEEE------eCCCCeEEEeeCCCceeEEEEeCCCC--eeEeeeCcC---C
Q 042434          286 GNAEVLKLWDVETGI-CKHTFGDHGFIVSSCAW------FPDSKRLVCGSSDTEKGIFMCDCDGN--EIKAWRGTR---I  353 (517)
Q Consensus       286 ~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~i~~------~~~~~~l~~~~~d~~v~i~~~~~~~~--~~~~~~~~~---~  353 (517)
                      +.||.|++||+.+++ .+..+..|...|.++.|      +|++++|++++.|+.  |.+||....  ....+..+.   .
T Consensus        87 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~--i~vwd~~~~~~~~~~~~~~~~~~~  164 (357)
T 3i2n_A           87 DFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGT--VKVWDPRQKDDPVANMEPVQGENK  164 (357)
T ss_dssp             ETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSC--EEEECTTSCSSCSEEECCCTTSCC
T ss_pred             cCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCe--EEEEeCCCCCCcceeccccCCCCC
Confidence            999999999999988 88889999999999965      678999999999999  888888753  344443322   3


Q ss_pred             CceEEEE----EccCCCEEEEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcC---CCCEEEEEeCCCeEEEEEcCCC
Q 042434          354 PKVLDLA----VTPDGENLISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSV---DCKNFIVNLNSQEIHMWDVAGK  425 (517)
Q Consensus       354 ~~i~~~~----~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~---~~~~l~~~~~d~~i~~~d~~~~  425 (517)
                      ..+.+++    |+|+++++++++.||.|++||+++.. .....+...+.+++|+|   ++.++++++.||.|++||+++.
T Consensus       165 ~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  244 (357)
T 3i2n_A          165 RDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQ  244 (357)
T ss_dssp             CCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEE
T ss_pred             CceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCC
Confidence            3788888    78899999999999999999999988 55567788999999999   9999999999999999999765


Q ss_pred             CccceEEe-----CcccCceEEEeecCCCCCc-EEEEecCCCcEEEEecCCC-------------------ceeEEecCC
Q 042434          426 WEKPFKYT-----GHSQNKYVIRSCFGGLDGT-FIASGSENSQIYIWNRRNS-------------------KPIEILSGH  480 (517)
Q Consensus       426 ~~~~~~~~-----~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~-------------------~~~~~~~~h  480 (517)
                       .....+.     +|...   +..+.++|+++ ++++|+.||.|++||+.++                   +++..+.+|
T Consensus       245 -~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  320 (357)
T 3i2n_A          245 -HPTKGFASVSEKAHKST---VWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLS  320 (357)
T ss_dssp             -ETTTEEEEEEEECCSSC---EEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECC
T ss_pred             -CcccceeeeccCCCcCC---EEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccC
Confidence             3333333     56554   56666789998 8999999999999998754                   467778899


Q ss_pred             CCCeeEEEecCCCCcEEE-EeeCCCcEEEeCCCCCCCC
Q 042434          481 SMTVNCVSWNPKRPKMLA-SASDDHTIRIWGPCQSSEV  517 (517)
Q Consensus       481 ~~~v~~v~~~~~~~~~l~-s~~~dg~v~iw~~~~~~~v  517 (517)
                      ...|++++|+|++. +|+ +++.||.|++|++.+.+.|
T Consensus       321 ~~~v~~~~~s~~~~-~l~~s~~~d~~i~iw~~~~~~~i  357 (357)
T 3i2n_A          321 TQPISSLDWSPDKR-GLCVCSSFDQTVRVLIVTKLNKI  357 (357)
T ss_dssp             SSCEEEEEECSSST-TEEEEEETTSEEEEEEECC----
T ss_pred             CCCeeEEEEcCCCC-eEEEEecCCCcEEEEECCCcccC
Confidence            99999999999994 565 8999999999999987654

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2.6e-40  Score=324.45  Aligned_cols=294  Identities=17%  Similarity=0.224  Sum_probs=231.8

Q ss_pred             EEEeccccCcEEEEEECC-CCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECC-CCCeEEEEeCCCeEE
Q 042434          215 VQILTEHKNEVWFVQFSN-NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP-DDTKLLTCGNAEVLK  292 (517)
Q Consensus       215 ~~~l~~h~~~v~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~  292 (517)
                      .....+|...|+|++|+| ++++||+|+.||.|+|||+.++.. .....+.+|.+.|++++|+| ++++|++|+.||+|+
T Consensus       112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~-~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~  190 (435)
T 4e54_B          112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDK-PTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR  190 (435)
T ss_dssp             CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSC-CEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred             cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCc-eeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence            445678999999999999 677999999999999999976543 34455678999999999998 689999999999999


Q ss_pred             EEECCCCcEEEEeC--CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCC-EEE
Q 042434          293 LWDVETGICKHTFG--DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGE-NLI  369 (517)
Q Consensus       293 iwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~  369 (517)
                      +||++++.......  .+...+.+++|+|++.+|++|+.||.  |.+||..+..+..+..+. ..|.+++|+|++. +++
T Consensus       191 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~--i~~wd~~~~~~~~~~~h~-~~v~~v~~~p~~~~~~~  267 (435)
T 4e54_B          191 LQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGN--VILLNMDGKELWNLRMHK-KKVTHVALNPCCDWFLA  267 (435)
T ss_dssp             EEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSB--EEEEESSSCBCCCSBCCS-SCEEEEEECTTCSSEEE
T ss_pred             EeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCc--EeeeccCcceeEEEeccc-ceEEeeeecCCCceEEE
Confidence            99998765544333  33556789999999999999999999  888899887776666544 5899999999886 788


Q ss_pred             EEeCCCcEEEEECCCce-----EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccC----ce
Q 042434          370 SVLSDKDIRILNLGTYA-----ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQN----KY  440 (517)
Q Consensus       370 ~~~~dg~i~i~d~~~~~-----~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~----~~  440 (517)
                      +++.|+.|++||+++..     .....|...|.+++|+|++.+|++++.|+.|++||+.+. .....+..|...    ..
T Consensus       268 s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~  346 (435)
T 4e54_B          268 TASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQW-DCPLGLIPHPHRHFQHLT  346 (435)
T ss_dssp             EEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSS-SSEEEECCCCCCCCSSSC
T ss_pred             EecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCC-ccceEEecccccccccce
Confidence            99999999999998765     223457889999999999999999999999999999876 444444433321    11


Q ss_pred             EEEeecCCCCCcEEEEec------------CCCcEEEEecCCCceeEEec-CCCCCeeEE-EecCCCCcEEEEeeCCCcE
Q 042434          441 VIRSCFGGLDGTFIASGS------------ENSQIYIWNRRNSKPIEILS-GHSMTVNCV-SWNPKRPKMLASASDDHTI  506 (517)
Q Consensus       441 ~i~~~~~s~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~-~h~~~v~~v-~~~~~~~~~l~s~~~dg~v  506 (517)
                      .+.. .++|++.++++++            .++.|++||..+++.+..+. +|...|.++ +|+|+| .+|++|+ |+.|
T Consensus       347 ~~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg-~~lasg~-d~~i  423 (435)
T 4e54_B          347 PIKA-AWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMG-DTLASAM-GYHI  423 (435)
T ss_dssp             CCBC-EECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTS-SCEEEEC-SSEE
T ss_pred             eEEE-EEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCC-CEEEEEc-CCcE
Confidence            1222 2355555555543            34679999999999988875 688889888 699999 6888776 7899


Q ss_pred             EEeCCCCCCC
Q 042434          507 RIWGPCQSSE  516 (517)
Q Consensus       507 ~iw~~~~~~~  516 (517)
                      +||++++++.
T Consensus       424 ~iW~~~~gk~  433 (435)
T 4e54_B          424 LIWSQQEART  433 (435)
T ss_dssp             EECCCC----
T ss_pred             EEEECCcCee
Confidence            9999998864

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.5e-39  Score=301.41  Aligned_cols=287  Identities=18%  Similarity=0.208  Sum_probs=248.1

Q ss_pred             cccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeE
Q 042434          212 TETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVL  291 (517)
Q Consensus       212 ~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i  291 (517)
                      .+....+.+|.+.|++++| |++++|++|+.||.|++||+.++   .....+..|...|.+++|+|++++|++++.||.|
T Consensus         8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i   83 (313)
T 3odt_A            8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQ---WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMI   83 (313)
T ss_dssp             CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSS---EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred             HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCC---EEEEEeecCCccEEEEEECCCCCEEEEecCCCeE
Confidence            4678899999999999999 99999999999999999999654   4556777899999999999999999999999999


Q ss_pred             EEEECCCC---cEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEcc-CCCE
Q 042434          292 KLWDVETG---ICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTP-DGEN  367 (517)
Q Consensus       292 ~iwd~~~~---~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~  367 (517)
                      ++|++.+.   +....+..|...|.+++|  +++.+++++.|+.  +.+|+ .+.....+.. +...+.++.+.| +++.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~--i~~~d-~~~~~~~~~~-~~~~v~~~~~~~~~~~~  157 (313)
T 3odt_A           84 NGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKT--AKVWK-EGSLVYNLQA-HNASVWDAKVVSFSENK  157 (313)
T ss_dssp             EEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSE--EEEEE-TTEEEEEEEC-CSSCEEEEEEEETTTTE
T ss_pred             EEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCC--EEEEc-CCcEEEeccc-CCCceeEEEEccCCCCE
Confidence            99998654   567778899999999999  5779999999999  77777 4444444444 446899999988 8999


Q ss_pred             EEEEeCCCcEEEEECCCceEEeec-cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeec
Q 042434          368 LISVLSDKDIRILNLGTYAERVIS-EEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCF  446 (517)
Q Consensus       368 l~~~~~dg~i~i~d~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~  446 (517)
                      +++++.||.|++||.......... +...+.+++|+|++. +++++.|+.|++||+++. .....+.+|...   +..+.
T Consensus       158 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~---i~~~~  232 (313)
T 3odt_A          158 FLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG-DVLRTYEGHESF---VYCIK  232 (313)
T ss_dssp             EEEEETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTC-CEEEEEECCSSC---EEEEE
T ss_pred             EEEEECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCch-hhhhhhhcCCce---EEEEE
Confidence            999999999999996555444444 888999999999998 999999999999999877 667777777765   55666


Q ss_pred             CCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434          447 GGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSE  516 (517)
Q Consensus       447 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~  516 (517)
                      ++|++ .+++++.||.|++||+.+++++..+..|...|.+++|+|++ . +++++.||.|++|++.+++.
T Consensus       233 ~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~-~-~~~~~~dg~i~iw~~~~~~~  299 (313)
T 3odt_A          233 LLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNG-D-IIVGSSDNLVRIFSQEKSRW  299 (313)
T ss_dssp             ECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTS-C-EEEEETTSCEEEEESCGGGC
T ss_pred             EecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCC-C-EEEEeCCCcEEEEeCCCCce
Confidence            78999 58899999999999999999999999999999999999999 4 66799999999999987653

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2.3e-39  Score=310.36  Aligned_cols=290  Identities=15%  Similarity=0.260  Sum_probs=240.1

Q ss_pred             EEeccccCcEEEEEECCC----CCEEEEeeCCCcEEEEEecCCCeeeEEEEec--cCCCCEEEEEECCC----CCeEEEE
Q 042434          216 QILTEHKNEVWFVQFSNN----GEYLASSSSDCSAIIWKVLEDSKLTLKHTLR--SHQNPVSFVAWSPD----DTKLLTC  285 (517)
Q Consensus       216 ~~l~~h~~~v~~~~~s~~----~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~--~h~~~v~~l~~s~~----~~~l~s~  285 (517)
                      ....+|.++|++++|+|+    ...+++++.++.|++|++.++..........  .|...|.+++|+|+    +.+|++|
T Consensus        12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~   91 (366)
T 3k26_A           12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA   91 (366)
T ss_dssp             EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred             EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence            345689999999999984    4566666677899999998665554444333  37789999999998    6799999


Q ss_pred             eCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeC-CCCeEEEeeCCCceeEEEEeCCCCeeEeee---CcCCCceEEEEE
Q 042434          286 GNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFP-DSKRLVCGSSDTEKGIFMCDCDGNEIKAWR---GTRIPKVLDLAV  361 (517)
Q Consensus       286 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~---~~~~~~i~~~~~  361 (517)
                      +.||.|++||+.+++.+..+..|...|.+++|+| ++.+|++++.||.  |.+||..........   ..+...|.+++|
T Consensus        92 ~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  169 (366)
T 3k26_A           92 GSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHA--LRLWNIQTDTLVAIFGGVEGHRDEVLSADY  169 (366)
T ss_dssp             ETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSC--EEEEETTTTEEEEEECSTTSCSSCEEEEEE
T ss_pred             cCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCe--EEEEEeecCeEEEEecccccccCceeEEEE
Confidence            9999999999999999999999999999999999 8999999999999  888898865544443   455678999999


Q ss_pred             ccCCCEEEEEeCCCcEEEEECCCceE--Ee----------------------------eccCCCeeEEEEcCCCCEEEEE
Q 042434          362 TPDGENLISVLSDKDIRILNLGTYAE--RV----------------------------ISEEHPITSLSVSVDCKNFIVN  411 (517)
Q Consensus       362 ~~~~~~l~~~~~dg~i~i~d~~~~~~--~~----------------------------~~~~~~i~~~~~s~~~~~l~~~  411 (517)
                      +|+++++++++.||.|++||+++...  ..                            ..+...+.+++|+  +++++++
T Consensus       170 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~  247 (366)
T 3k26_A          170 DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSK  247 (366)
T ss_dssp             CTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEE
T ss_pred             CCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEE
Confidence            99999999999999999999987651  11                            1177889999998  7799999


Q ss_pred             eCCCeEEEEEcCCCCc-------------cceEEeCcccCceEEEeecCCCC--CcEEEEecCCCcEEEEecCCCce---
Q 042434          412 LNSQEIHMWDVAGKWE-------------KPFKYTGHSQNKYVIRSCFGGLD--GTFIASGSENSQIYIWNRRNSKP---  473 (517)
Q Consensus       412 ~~d~~i~~~d~~~~~~-------------~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~iwd~~~~~~---  473 (517)
                      +.|+.|++||+.+...             ....+.+|...   +..+.++|+  +++|++|+.||.|++||+.++++   
T Consensus       248 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~  324 (366)
T 3k26_A          248 SCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCD---IWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKA  324 (366)
T ss_dssp             CSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCC---SSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGC
T ss_pred             ecCCEEEEEeCCCccccccccccCCcchheeccccccCCc---EEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccc
Confidence            9999999999976532             13344444443   556667888  99999999999999999998864   


Q ss_pred             -eEEecCC--CCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434          474 -IEILSGH--SMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ  513 (517)
Q Consensus       474 -~~~~~~h--~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~  513 (517)
                       ...+.+|  ...|++++|+|++ .+|++++.||.|++||+.+
T Consensus       325 ~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          325 KCTTLTHHKCGAAIRQTSFSRDS-SILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             EEEEECCTTCCSCEEEEEECTTS-SEEEEEETTSEEEEEEC--
T ss_pred             cceEEcccccCCceEEEEeCCCC-CeEEEEeCCCEEEEEEecC
Confidence             3477777  7999999999999 7999999999999999863

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=6.3e-40  Score=315.16  Aligned_cols=292  Identities=16%  Similarity=0.180  Sum_probs=242.0

Q ss_pred             EeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEEC
Q 042434          217 ILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDV  296 (517)
Q Consensus       217 ~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~  296 (517)
                      .+..|.++|++++|+|++++|++|+.||.|++|++.++. ......+.+|...|.+++|+|++++|++++.||.|++||+
T Consensus         3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~   81 (372)
T 1k8k_C            3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL   81 (372)
T ss_dssp             EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred             eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-EEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEEC
Confidence            345699999999999999999999999999999997552 3466788899999999999999999999999999999999


Q ss_pred             CCCcEEEE--eCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCC--eeEeeeCcCCCceEEEEEccCCCEEEEEe
Q 042434          297 ETGICKHT--FGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGN--EIKAWRGTRIPKVLDLAVTPDGENLISVL  372 (517)
Q Consensus       297 ~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  372 (517)
                      .+++....  +..|...|.+++|+|+++++++++.|+.+.+|.++....  ........+...|.+++|+|+++++++++
T Consensus        82 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  161 (372)
T 1k8k_C           82 KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS  161 (372)
T ss_dssp             ETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE
T ss_pred             CCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEc
Confidence            98875544  357899999999999999999999999955555554432  23444455567899999999999999999


Q ss_pred             CCCcEEEEECC------------------Cce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEE
Q 042434          373 SDKDIRILNLG------------------TYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKY  432 (517)
Q Consensus       373 ~dg~i~i~d~~------------------~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~  432 (517)
                      .||.|++||++                  ...  .....+...+.+++|+|+++++++++.|+.|++||+++. .....+
T Consensus       162 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~  240 (372)
T 1k8k_C          162 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK-MAVATL  240 (372)
T ss_dssp             TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT-TEEEEE
T ss_pred             CCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC-ceeEEE
Confidence            99999999964                  333  334467788999999999999999999999999999876 566677


Q ss_pred             eCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCC--Cce--------------------------------e----
Q 042434          433 TGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRN--SKP--------------------------------I----  474 (517)
Q Consensus       433 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~--~~~--------------------------------~----  474 (517)
                      ..|...   +..+.++|++.++++| .||.|++|++.+  ++.                                .    
T Consensus       241 ~~~~~~---v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (372)
T 1k8k_C          241 ASETLP---LLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAA  316 (372)
T ss_dssp             ECSSCC---EEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC-------
T ss_pred             ccCCCC---eEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcc
Confidence            776654   5566678999999888 899999999987  421                                0    


Q ss_pred             --EEe-cCCCCCeeEEEecCCCC---cEEEEeeCCCcEEEeCCCCC
Q 042434          475 --EIL-SGHSMTVNCVSWNPKRP---KMLASASDDHTIRIWGPCQS  514 (517)
Q Consensus       475 --~~~-~~h~~~v~~v~~~~~~~---~~l~s~~~dg~v~iw~~~~~  514 (517)
                        ..+ .+|.+.|++++|++...   .+|+||+.||.|++|++.++
T Consensus       317 ~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~  362 (372)
T 1k8k_C          317 AGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL  362 (372)
T ss_dssp             --CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred             ccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence              223 48999999999875543   59999999999999998654

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.7e-39  Score=315.85  Aligned_cols=380  Identities=20%  Similarity=0.300  Sum_probs=243.9

Q ss_pred             chHHHHHHHHHHHhhcChHHHHHHHhhhcCeeecChhHHHHHHHHHcCChHHHHHHhhcccCCChhhhcccchhhhhhhh
Q 042434           15 KKYEFVRVVVQCLYSLGYQKSASCLESESGVSYKSKGFERLEVQILNGDWDGCIDTLIAITDLNDERRASVLFPVFKQCF   94 (517)
Q Consensus        15 ~~~~~~~li~q~L~~~g~~~s~~~l~~Esg~~~~~~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~   94 (517)
                      -++|++|+|+|||+|+||.+++++|++|+|++++. ....+...++++.|+.++.+-+.+                    
T Consensus         7 q~~~~~~~i~~~l~~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~~w~~~~~l~~~~--------------------   65 (410)
T 1vyh_C            7 QRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNE-ELDKKYAGLLEKKWTSVIRLQKKV--------------------   65 (410)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHhcChHHHHHHHHHHhCCCCCc-chhhhhhchhhhhhhheeeHHHHH--------------------
Confidence            57899999999999999999999999999998765 345667778899999877543222                    


Q ss_pred             hHhhhcCChhHHHHHHHhhcccCCCChhHHhhhhhccccccccccccCCcchhhhHHHHHHHHHHHhCCCCCCCCcchHH
Q 042434           95 LEYLNRGDDSLALNVLRKRVSSLQMSKDTIHNLASSMLCLEGMNLGKIDEGVVLELRKRLLVELERLLPPPEVVPERRLE  174 (517)
Q Consensus        95 ~el~~~~~~~~a~~~lr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~rl~  174 (517)
                      .++...  ..+    ++.++....                              ..+..  .......|...  ....+ 
T Consensus        66 ~~~~~~--~~~----~~~~~~~~~------------------------------~~~~~--~~~~~~~~~~~--~~~~l-  104 (410)
T 1vyh_C           66 MELESK--LNE----AKEEFTSGG------------------------------PLGQK--RDPKEWIPRPP--EKYAL-  104 (410)
T ss_dssp             ----------------------------------------------------------------CCCCCCSS--CSCEE-
T ss_pred             HHHHHH--HHH----HHHHHhccC------------------------------Ccccc--CCccccccCCC--ceEee-
Confidence            111000  000    000000000                              00000  00001111110  00000 


Q ss_pred             HHHHHHHHhccccccCCCCCc-cccccCC-CcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEec
Q 042434          175 HLVETAVTSQIDSCQYHNSSV-AISLYED-HCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVL  252 (517)
Q Consensus       175 ~l~~~~~~~q~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~  252 (517)
                          ..+...+.++.|++... .++...| ....|+....+....+.+|.+.|++++|+|+|++|++|+.||+|++||+.
T Consensus       105 ----~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~  180 (410)
T 1vyh_C          105 ----SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ  180 (410)
T ss_dssp             ----ECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred             ----cccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence                12345667777877655 4444444 45567777788899999999999999999999999999999999999996


Q ss_pred             CCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCc
Q 042434          253 EDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTE  332 (517)
Q Consensus       253 ~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~  332 (517)
                      +.   ....++.+|...|.+++|+|++++|++|+.|++|++||+.++.++..+.+|...|.++.|+|++.++++|+.|+.
T Consensus       181 ~~---~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~  257 (410)
T 1vyh_C          181 GF---ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT  257 (410)
T ss_dssp             SS---CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             CC---ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCe
Confidence            54   556788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEEEeCCCCeeEeeeCcCCCceEEEEEccC--------------------CCEEEEEeCCCcEEEEECCCce--EEee
Q 042434          333 KGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPD--------------------GENLISVLSDKDIRILNLGTYA--ERVI  390 (517)
Q Consensus       333 v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------------------~~~l~~~~~dg~i~i~d~~~~~--~~~~  390 (517)
                        |.+|+............+...|.+++|+|+                    +.++++|+.|+.|++||++++.  ....
T Consensus       258 --v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~  335 (410)
T 1vyh_C          258 --VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV  335 (410)
T ss_dssp             --EEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             --EEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEE
Confidence              888888765554444455568999999996                    6789999999999999999887  4555


Q ss_pred             ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecC
Q 042434          391 SEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRR  469 (517)
Q Consensus       391 ~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~  469 (517)
                      .|...|.+++|+|+++++++++.|+.|++||+.+. .....+.+|...   +.++.|+|++.+|++|+.||+|++|+++
T Consensus       336 ~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~-~~~~~~~~h~~~---v~~l~~~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          336 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK-RCMKTLNAHEHF---VTSLDFHKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS-CCCEEEECCSSC---EEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred             CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceEEEEcCCCCc---EEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence            68889999999999999999999999999999776 667788888766   6666779999999999999999999863

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.4e-39  Score=314.91  Aligned_cols=316  Identities=16%  Similarity=0.159  Sum_probs=258.6

Q ss_pred             ccccccCCCCCc--cccccC-CCcccccC----CCcc------cEEEecc----------ccCcEEEEEECCCCCEEEEe
Q 042434          184 QIDSCQYHNSSV--AISLYE-DHCCGRDQ----IPTE------TVQILTE----------HKNEVWFVQFSNNGEYLASS  240 (517)
Q Consensus       184 q~~~~~~~~~~~--~~~~~~-~~~~~~~~----~~~~------~~~~l~~----------h~~~v~~~~~s~~~~~l~t~  240 (517)
                      .+.++.+++...  .+.... +....|+.    ...+      ....+..          |.+.|++++|+|++++|++|
T Consensus        47 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  126 (425)
T 1r5m_A           47 NIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTG  126 (425)
T ss_dssp             CCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEE
T ss_pred             ceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEE
Confidence            455666666544  223333 33445554    3444      3444444          78899999999999999999


Q ss_pred             eCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCc---------
Q 042434          241 SSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFI---------  311 (517)
Q Consensus       241 ~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---------  311 (517)
                      +.||.|++|+. ++   .....+..|...|.+++|+|++++|++++.||.|++||+.+++.+..+..+...         
T Consensus       127 ~~dg~i~i~~~-~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  202 (425)
T 1r5m_A          127 VENGELRLWNK-TG---ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENH  202 (425)
T ss_dssp             ETTSCEEEEET-TS---CEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC------------
T ss_pred             eCCCeEEEEeC-CC---CeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccc
Confidence            99999999993 33   455678899999999999999999999999999999999999999998877766         


Q ss_pred             ------eEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCc
Q 042434          312 ------VSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTY  385 (517)
Q Consensus       312 ------v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  385 (517)
                            +.+++|+|++ .+++++.+|.  +++|+............+...|.+++|+|+++++++++.|+.|++||+++.
T Consensus       203 ~~~~~~~~~~~~~~~~-~~~~~~~~g~--i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  279 (425)
T 1r5m_A          203 SGDGSLGVDVEWVDDD-KFVIPGPKGA--IFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG  279 (425)
T ss_dssp             ---CCCBSCCEEEETT-EEEEECGGGC--EEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSB
T ss_pred             cCCcceeeEEEEcCCC-EEEEEcCCCe--EEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC
Confidence                  9999999875 5888899998  888898865444333445568999999999999999999999999999887


Q ss_pred             e--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcE
Q 042434          386 A--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQI  463 (517)
Q Consensus       386 ~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i  463 (517)
                      .  .....+...+.+++|+|++ .+++++.|+.|++||+++. .....+..|...   +..+.++|++++|++++.||.|
T Consensus       280 ~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~---i~~~~~s~~~~~l~~~~~dg~i  354 (425)
T 1r5m_A          280 NSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN-TLLALSIVDGVP---IFAGRISQDGQKYAVAFMDGQV  354 (425)
T ss_dssp             SCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTT-EEEEEEECTTCC---EEEEEECTTSSEEEEEETTSCE
T ss_pred             ccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCC-cEeEecccCCcc---EEEEEEcCCCCEEEEEECCCeE
Confidence            6  4455678899999999999 9999999999999999876 566666666654   5566679999999999999999


Q ss_pred             EEEecCCCc--------------------eeEEecCCCC--CeeEEEecCCCCcEEEEeeCCCcEEEeCCC
Q 042434          464 YIWNRRNSK--------------------PIEILSGHSM--TVNCVSWNPKRPKMLASASDDHTIRIWGPC  512 (517)
Q Consensus       464 ~iwd~~~~~--------------------~~~~~~~h~~--~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~  512 (517)
                      ++||+.+++                    ++..+.+|..  .|++++|+|++ .+|++++.||.|++|+++
T Consensus       355 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          355 NVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAG-NKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             EEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTS-SEEEEEESSSCCEEEECC
T ss_pred             EEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCC-ceEEEEecCceEEEEeec
Confidence            999999888                    8999999976  99999999999 699999999999999986

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-39  Score=318.26  Aligned_cols=323  Identities=14%  Similarity=0.145  Sum_probs=258.2

Q ss_pred             ccccccCCCCCc--cccc----------cCCC-cccccCCCcc---cEEEeccccCcEEEEEECCCCCEEEEeeCCCcEE
Q 042434          184 QIDSCQYHNSSV--AISL----------YEDH-CCGRDQIPTE---TVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAI  247 (517)
Q Consensus       184 q~~~~~~~~~~~--~~~~----------~~~~-~~~~~~~~~~---~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~  247 (517)
                      .+..+.+++...  .+..          ..+. ...|+.....   ++..+ .|.+.|++++|+|++++|++|+.||.|+
T Consensus        14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~   92 (416)
T 2pm9_A           14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLE   92 (416)
T ss_dssp             ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEE
T ss_pred             hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEE
Confidence            455667776643  2222          3333 4444444333   33333 5999999999999999999999999999


Q ss_pred             EEEecCCCe-eeEEEEeccCCCCEEEEEECCC-CCeEEEEeCCCeEEEEECCCCc------EEEE---eCCCCCceEEEE
Q 042434          248 IWKVLEDSK-LTLKHTLRSHQNPVSFVAWSPD-DTKLLTCGNAEVLKLWDVETGI------CKHT---FGDHGFIVSSCA  316 (517)
Q Consensus       248 iw~~~~~~~-~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~------~~~~---~~~~~~~v~~i~  316 (517)
                      +|++..... ......+.+|...|.+++|+|+ +++|++++.||.|++||+.+++      ....   +..|...|.+++
T Consensus        93 vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  172 (416)
T 2pm9_A           93 LYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLA  172 (416)
T ss_dssp             EECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEE
T ss_pred             EeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEE
Confidence            999975211 2366788899999999999998 8999999999999999999886      3322   357889999999


Q ss_pred             EeCC-CCeEEEeeCCCceeEEEEeCCCCee-EeeeCcC-----CCceEEEEEccCC-CEEEEEeCCC---cEEEEECCCc
Q 042434          317 WFPD-SKRLVCGSSDTEKGIFMCDCDGNEI-KAWRGTR-----IPKVLDLAVTPDG-ENLISVLSDK---DIRILNLGTY  385 (517)
Q Consensus       317 ~~~~-~~~l~~~~~d~~v~i~~~~~~~~~~-~~~~~~~-----~~~i~~~~~~~~~-~~l~~~~~dg---~i~i~d~~~~  385 (517)
                      |+|+ +.++++++.|+.  |.+||...... ..+..+.     ...+.+++|+|++ ..+++++.|+   .|++||+++.
T Consensus       173 ~~~~~~~~l~~~~~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~  250 (416)
T 2pm9_A          173 WNQSLAHVFASAGSSNF--ASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNA  250 (416)
T ss_dssp             ECSSCTTEEEEESSSSC--EEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTST
T ss_pred             eCCCCCcEEEEEcCCCC--EEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCC
Confidence            9999 789999999999  88899876544 3333332     5689999999997 6899999998   9999999985


Q ss_pred             e---EEee-ccCCCeeEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCC-cEEEEecC
Q 042434          386 A---ERVI-SEEHPITSLSVSV-DCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDG-TFIASGSE  459 (517)
Q Consensus       386 ~---~~~~-~~~~~i~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~  459 (517)
                      .   .... .+...+.+++|+| +++++++++.|+.|++||+++. .....+.+|...   +..+.|+|++ .++++++.
T Consensus       251 ~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~-~~~~~~~~~~~~---v~~~~~s~~~~~~l~s~~~  326 (416)
T 2pm9_A          251 NTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA-EQLSQFPARGNW---CFKTKFAPEAPDLFACASF  326 (416)
T ss_dssp             TSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC-CEEEEEECSSSC---CCCEEECTTCTTEEEECCS
T ss_pred             CCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC-ccceeecCCCCc---eEEEEECCCCCCEEEEEec
Confidence            3   3333 5788999999999 9999999999999999999887 667777777765   4556668998 89999999


Q ss_pred             CCcEEEEecCCCceeEEec-----------------------------------CCCCCeeEEEecCCCCcEEEEeeCCC
Q 042434          460 NSQIYIWNRRNSKPIEILS-----------------------------------GHSMTVNCVSWNPKRPKMLASASDDH  504 (517)
Q Consensus       460 dg~i~iwd~~~~~~~~~~~-----------------------------------~h~~~v~~v~~~~~~~~~l~s~~~dg  504 (517)
                      ||.|++||+.++.......                                   .|..++++++|+|+| .+|++++.||
T Consensus       327 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~la~~~~d~  405 (416)
T 2pm9_A          327 DNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGG-KLVQITPDGK  405 (416)
T ss_dssp             SSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTT-EEECBCTTSS
T ss_pred             CCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCC-eEEEEeCCCC
Confidence            9999999998775433221                                   167788899999999 8999999999


Q ss_pred             cEEEeCCCCC
Q 042434          505 TIRIWGPCQS  514 (517)
Q Consensus       505 ~v~iw~~~~~  514 (517)
                      .|+||++.++
T Consensus       406 ~v~~w~~~~~  415 (416)
T 2pm9_A          406 GVSITNPKIS  415 (416)
T ss_dssp             CBCCBCCCCC
T ss_pred             eEEEEEeccC
Confidence            9999999875

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-39  Score=318.25  Aligned_cols=289  Identities=16%  Similarity=0.214  Sum_probs=244.9

Q ss_pred             ccCcEEEEEECCCCC-EEEEe----------eCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCC
Q 042434          221 HKNEVWFVQFSNNGE-YLASS----------SSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAE  289 (517)
Q Consensus       221 h~~~v~~~~~s~~~~-~l~t~----------~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg  289 (517)
                      +...|.+++|+|+|+ +|++|          +.||.|+||++.++........ ..|...|.+++|+|++++|++++.||
T Consensus        11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg   89 (416)
T 2pm9_A           11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS-LQVDSKFNDLDWSHNNKIIAGALDNG   89 (416)
T ss_dssp             EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC-CCCSSCEEEEEECSSSSCEEEEESSS
T ss_pred             hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE-EecCCceEEEEECCCCCeEEEEccCC
Confidence            445788999999987 99999          8899999999976543222232 35889999999999999999999999


Q ss_pred             eEEEEECCC----CcEEEEeCCCCCceEEEEEeCC-CCeEEEeeCCCceeEEEEeCCCCe-------eEee--eCcCCCc
Q 042434          290 VLKLWDVET----GICKHTFGDHGFIVSSCAWFPD-SKRLVCGSSDTEKGIFMCDCDGNE-------IKAW--RGTRIPK  355 (517)
Q Consensus       290 ~i~iwd~~~----~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~d~~v~i~~~~~~~~~-------~~~~--~~~~~~~  355 (517)
                      .|++||+.+    .+....+..|...|.+++|+|+ +.+|++++.|+.  |.+||.....       ....  ...+...
T Consensus        90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  167 (416)
T 2pm9_A           90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGE--IFIWDMNKCTESPSNYTPLTPGQSMSSVDE  167 (416)
T ss_dssp             CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSC--EEBCBTTTTSSCTTTCCCBCCCCSCCSSCC
T ss_pred             eEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCe--EEEEECCCCccccccccccccccccCCCCC
Confidence            999999987    4588888899999999999998 899999999999  8888887543       1111  2345568


Q ss_pred             eEEEEEccC-CCEEEEEeCCCcEEEEECCCce-E-Eeecc------CCCeeEEEEcCCC-CEEEEEeCCC---eEEEEEc
Q 042434          356 VLDLAVTPD-GENLISVLSDKDIRILNLGTYA-E-RVISE------EHPITSLSVSVDC-KNFIVNLNSQ---EIHMWDV  422 (517)
Q Consensus       356 i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~-~-~~~~~------~~~i~~~~~s~~~-~~l~~~~~d~---~i~~~d~  422 (517)
                      |.+++|+|+ +..+++++.||.|++||+++.. . ....+      ...+.+++|+|++ ..+++++.++   .|++||+
T Consensus       168 v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~  247 (416)
T 2pm9_A          168 VISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDL  247 (416)
T ss_dssp             CCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEET
T ss_pred             eeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeC
Confidence            999999999 7899999999999999999877 2 22222      6789999999997 6899999998   9999999


Q ss_pred             CCCCccceEEe-CcccCceEEEeecCCC-CCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEe
Q 042434          423 AGKWEKPFKYT-GHSQNKYVIRSCFGGL-DGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASA  500 (517)
Q Consensus       423 ~~~~~~~~~~~-~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~  500 (517)
                      ++.......+. +|...   +..+.|+| ++++|++++.||.|++||+.+++++..+.+|...|++++|+|+++.+|+++
T Consensus       248 ~~~~~~~~~~~~~~~~~---v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~  324 (416)
T 2pm9_A          248 RNANTPLQTLNQGHQKG---ILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACA  324 (416)
T ss_dssp             TSTTSCSBCCCSCCSSC---EEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEEC
T ss_pred             CCCCCCcEEeecCccCc---eeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEE
Confidence            87645566666 66655   55666688 999999999999999999999999999999999999999999986799999


Q ss_pred             eCCCcEEEeCCCCCC
Q 042434          501 SDDHTIRIWGPCQSS  515 (517)
Q Consensus       501 ~~dg~v~iw~~~~~~  515 (517)
                      +.||.|++|++.+++
T Consensus       325 ~~d~~i~iw~~~~~~  339 (416)
T 2pm9_A          325 SFDNKIEVQTLQNLT  339 (416)
T ss_dssp             CSSSEEEEEESCCCC
T ss_pred             ecCCcEEEEEccCCC
Confidence            999999999998765

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=5.5e-38  Score=297.47  Aligned_cols=279  Identities=21%  Similarity=0.294  Sum_probs=235.9

Q ss_pred             HhccccccCCCCCc-cccccCC-CcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCC-eee
Q 042434          182 TSQIDSCQYHNSSV-AISLYED-HCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDS-KLT  258 (517)
Q Consensus       182 ~~q~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~-~~~  258 (517)
                      ...+..+.+.++.. .++...| ....|+......+..+..|...|.+++|+|+|++|++|+.|+.|++|++.+.. ...
T Consensus        55 ~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~  134 (340)
T 1got_B           55 LAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVR  134 (340)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCE
T ss_pred             CCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcce
Confidence            34556666766654 3444444 45567777788899999999999999999999999999999999999997543 234


Q ss_pred             EEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEE
Q 042434          259 LKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMC  338 (517)
Q Consensus       259 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~  338 (517)
                      ....+.+|.+.|.++.|++++. +++++.|++|++||+.+++++..+.+|...|.+++|+|+++++++|+.|+.  |.+|
T Consensus       135 ~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~--v~~w  211 (340)
T 1got_B          135 VSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDAS--AKLW  211 (340)
T ss_dssp             EEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC--EEEE
T ss_pred             eEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCc--EEEE
Confidence            5677889999999999998775 889999999999999999999999999999999999999999999999999  8888


Q ss_pred             eCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEeecc---CCCeeEEEEcCCCCEEEEEeCC
Q 042434          339 DCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVISE---EHPITSLSVSVDCKNFIVNLNS  414 (517)
Q Consensus       339 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~---~~~i~~~~~s~~~~~l~~~~~d  414 (517)
                      |............+...|.+++|+|+++++++++.||.|++||+++.. .....+   ...+.+++|+|+++++++++.|
T Consensus       212 d~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d  291 (340)
T 1got_B          212 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD  291 (340)
T ss_dssp             ETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred             ECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCC
Confidence            987655444444455689999999999999999999999999999876 233332   2369999999999999999999


Q ss_pred             CeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEe
Q 042434          415 QEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWN  467 (517)
Q Consensus       415 ~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd  467 (517)
                      +.|++||+.+. .....+.+|...   +.++.++|+|.+|++|+.||.|++||
T Consensus       292 ~~i~vwd~~~~-~~~~~~~~h~~~---v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          292 FNCNVWDALKA-DRAGVLAGHDNR---VSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             SEEEEEETTTC-CEEEEEECCSSC---EEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CeEEEEEcccC-cEeeEeecCCCc---EEEEEEcCCCCEEEEEcCCccEEecC
Confidence            99999999876 666778888776   56667799999999999999999997

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.7e-37  Score=303.06  Aligned_cols=278  Identities=22%  Similarity=0.312  Sum_probs=230.7

Q ss_pred             cEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEE
Q 042434          224 EVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKH  303 (517)
Q Consensus       224 ~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~  303 (517)
                      .++.++||++ ++||+|. |++|+|||..++... ....+.+|...|++++|+|+|++|++|+.||+|++||+.+++++.
T Consensus       107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~-~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~  183 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDIL-QLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR  183 (420)
T ss_dssp             TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEE-EEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEE-EEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE
Confidence            4678999976 5787775 899999999877433 333456788899999999999999999999999999999999999


Q ss_pred             EeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC--CeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEE
Q 042434          304 TFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG--NEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILN  381 (517)
Q Consensus       304 ~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  381 (517)
                      .+.+|...+.+++|+  +..+++|+.|+.  ++.|+...  ..+..+.. +...+..+.++|+++.+++++.|+.+++||
T Consensus       184 ~~~~h~~~v~~~s~~--~~~l~sgs~d~~--i~~~d~~~~~~~~~~~~~-h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~  258 (420)
T 4gga_A          184 NMTSHSARVGSLSWN--SYILSSGSRSGH--IHHHDVRVAEHHVATLSG-HSQEVCGLRWAPDGRHLASGGNDNLVNVWP  258 (420)
T ss_dssp             EECCCSSCEEEEEEE--TTEEEEEETTSE--EEEEETTSSSCEEEEEEC-CSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             EEeCCCCceEEEeeC--CCEEEEEeCCCc--eeEeeecccceeeEEecc-cccceeeeeecCCCCeeeeeeccccceEEe
Confidence            999999999998875  679999999999  77777663  33444444 446899999999999999999999999999


Q ss_pred             CCCce------EEeeccCCCeeEEEEcCCCCE-EEE--EeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCc
Q 042434          382 LGTYA------ERVISEEHPITSLSVSVDCKN-FIV--NLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGT  452 (517)
Q Consensus       382 ~~~~~------~~~~~~~~~i~~~~~s~~~~~-l~~--~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  452 (517)
                      ..+..      .....+...|.+++|+|.+.. +++  |+.|+.|++||+.++ .....+..+..    +..+.++++++
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~-~~~~~~~~~~~----v~~~~~~~~~~  333 (420)
T 4gga_A          259 SAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG-ACLSAVDAHSQ----VCSILWSPHYK  333 (420)
T ss_dssp             SSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT-EEEEEEECSSC----EEEEEEETTTT
T ss_pred             eccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc-ccceeeccccc----eeeeeecCCCC
Confidence            98754      345567788999999997654 444  357999999999887 55555555443    44455578888


Q ss_pred             EEEEec--CCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434          453 FIASGS--ENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS  515 (517)
Q Consensus       453 ~l~~~~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~  515 (517)
                      .+++++  .||.|++||+.+++++.++.+|.+.|++++|+|+| .+|+|||.||+|+|||+....
T Consensus       334 ~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg-~~l~S~s~D~tvriWdv~~~~  397 (420)
T 4gga_A          334 ELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDG-ATVASAAADETLRLWRCFELD  397 (420)
T ss_dssp             EEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-SCEEEEETTTEEEEECCSCSS
T ss_pred             eEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC-CEEEEEecCCeEEEEECCCCC
Confidence            887654  79999999999999999999999999999999999 799999999999999987643

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.4e-39  Score=314.05  Aligned_cols=297  Identities=12%  Similarity=0.164  Sum_probs=238.6

Q ss_pred             cCCCcccEEEe-ccccCcEEEEEECC-CCCEEEEeeCCCcEEEEEecC---CCeeeEEEEeccCCCCEEEEEECCCCCeE
Q 042434          208 DQIPTETVQIL-TEHKNEVWFVQFSN-NGEYLASSSSDCSAIIWKVLE---DSKLTLKHTLRSHQNPVSFVAWSPDDTKL  282 (517)
Q Consensus       208 ~~~~~~~~~~l-~~h~~~v~~~~~s~-~~~~l~t~~~dg~i~iw~~~~---~~~~~~~~~~~~h~~~v~~l~~s~~~~~l  282 (517)
                      +....+.+..+ .+|.+.|++++|+| ++++||+|+.||+|+|||+.+   +........+ .|...|.+++|+|++++|
T Consensus        48 w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l  126 (437)
T 3gre_A           48 GNLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAF  126 (437)
T ss_dssp             GGCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEE
T ss_pred             ccccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEE
Confidence            45667888888 89999999999999 999999999999999999975   3222222333 499999999999999999


Q ss_pred             EEEeCCCeEEEEECC---CCcEEEEeC----------C--CCCceEEEE--EeCCCCeEEEeeCCCceeEEEEeCCC-Ce
Q 042434          283 LTCGNAEVLKLWDVE---TGICKHTFG----------D--HGFIVSSCA--WFPDSKRLVCGSSDTEKGIFMCDCDG-NE  344 (517)
Q Consensus       283 ~s~~~dg~i~iwd~~---~~~~~~~~~----------~--~~~~v~~i~--~~~~~~~l~~~~~d~~v~i~~~~~~~-~~  344 (517)
                      ++++.||+|++||+.   +++....+.          .  +...+.++.  +++++.++++++.|+.  |.+||... ..
T Consensus       127 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~--i~iwd~~~~~~  204 (437)
T 3gre_A          127 AVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSR--VIIFDIRTLER  204 (437)
T ss_dssp             EEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSE--EEEEETTTCCE
T ss_pred             EEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCe--EEEEeCCCCee
Confidence            999999999999994   555544332          2  556677776  5678999999999999  88899875 44


Q ss_pred             eEeeeCc-CCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceE-Ee--eccCCCeeEEEEc----CCCCEEEEEeCCCe
Q 042434          345 IKAWRGT-RIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAE-RV--ISEEHPITSLSVS----VDCKNFIVNLNSQE  416 (517)
Q Consensus       345 ~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~--~~~~~~i~~~~~s----~~~~~l~~~~~d~~  416 (517)
                      +..+... +...|.+++|+|+++++++++.||.|++||++++.. ..  ..+..+|.+++++    |++.++++++.|+.
T Consensus       205 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~  284 (437)
T 3gre_A          205 LQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTF  284 (437)
T ss_dssp             EEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEE
T ss_pred             eEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCc
Confidence            4555553 556899999999999999999999999999998772 22  2566789999665    46789999999999


Q ss_pred             EEEEEcCCCCccceEEeCcccC-----------------------ceEEEeecCCCCCcEEEEecCCCcEEEEecCCCce
Q 042434          417 IHMWDVAGKWEKPFKYTGHSQN-----------------------KYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKP  473 (517)
Q Consensus       417 i~~~d~~~~~~~~~~~~~~~~~-----------------------~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  473 (517)
                      |++||++++ .....+.++...                       ...+.++.++ ++++|++|+.||.|++||+.+++.
T Consensus       285 i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~  362 (437)
T 3gre_A          285 LTIWNFVKG-HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSS  362 (437)
T ss_dssp             EEEEETTTT-EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGG
T ss_pred             EEEEEcCCC-cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCccc
Confidence            999999876 555555544321                       1113344456 678999999999999999999988


Q ss_pred             eEEecC-------------------------------------CCCCeeEEEecCC--CCcEEEEeeCCCcEEEeC
Q 042434          474 IEILSG-------------------------------------HSMTVNCVSWNPK--RPKMLASASDDHTIRIWG  510 (517)
Q Consensus       474 ~~~~~~-------------------------------------h~~~v~~v~~~~~--~~~~l~s~~~dg~v~iw~  510 (517)
                      ...+.+                                     |...|++++|+++  + .+|++|+.||.|+||+
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~-~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          363 SKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDET-PLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             CEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSS-EEEEEEETTSCEEEEC
T ss_pred             ceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCc-eEEEEEcCCceEEEeC
Confidence            877765                                     8899999999998  5 7999999999999995

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.3e-37  Score=302.78  Aligned_cols=300  Identities=17%  Similarity=0.260  Sum_probs=240.8

Q ss_pred             cccEEEeccccCcEEEEEECC-CCCEEEEeeCCCcEEEEEecCCCeeeEEEEe----------ccCCCCEEEEEECC-CC
Q 042434          212 TETVQILTEHKNEVWFVQFSN-NGEYLASSSSDCSAIIWKVLEDSKLTLKHTL----------RSHQNPVSFVAWSP-DD  279 (517)
Q Consensus       212 ~~~~~~l~~h~~~v~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~----------~~h~~~v~~l~~s~-~~  279 (517)
                      .+....+.+|.+.|++++|+| ++++|++|+.||.|++|++.++.........          .+|...|.+++|+| ++
T Consensus        33 ~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  112 (408)
T 4a11_B           33 NKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDT  112 (408)
T ss_dssp             CTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCT
T ss_pred             CcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCC
Confidence            566778889999999999999 9999999999999999999765443222111          25999999999999 77


Q ss_pred             CeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCC---CCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCce
Q 042434          280 TKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPD---SKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKV  356 (517)
Q Consensus       280 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~---~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i  356 (517)
                      .+|++++.||.|++||+.+++....+. +...+.++.|+|.   +.++++++.++.  +.+|+............+...|
T Consensus       113 ~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~d~~~~~~~~~~~~~~~~v  189 (408)
T 4a11_B          113 GMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPK--VQLCDLKSGSCSHILQGHRQEI  189 (408)
T ss_dssp             TCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSS--EEEEESSSSCCCEEECCCCSCE
T ss_pred             cEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCe--EEEEeCCCcceeeeecCCCCcE
Confidence            899999999999999999999888874 7788999999985   449999999999  8888887544433334455689


Q ss_pred             EEEEEccCCC-EEEEEeCCCcEEEEECCCce---EEe---------------eccCCCeeEEEEcCCCCEEEEEeCCCeE
Q 042434          357 LDLAVTPDGE-NLISVLSDKDIRILNLGTYA---ERV---------------ISEEHPITSLSVSVDCKNFIVNLNSQEI  417 (517)
Q Consensus       357 ~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~---~~~---------------~~~~~~i~~~~~s~~~~~l~~~~~d~~i  417 (517)
                      .+++|+|+++ .+++++.||.|++||+++..   ...               ..+...+.+++|+|+++++++++.|+.|
T Consensus       190 ~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  269 (408)
T 4a11_B          190 LAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRM  269 (408)
T ss_dssp             EEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             EEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeE
Confidence            9999999998 58899999999999997754   111               3567789999999999999999999999


Q ss_pred             EEEEcCCCCccceEEeCccc--CceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCc
Q 042434          418 HMWDVAGKWEKPFKYTGHSQ--NKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPK  495 (517)
Q Consensus       418 ~~~d~~~~~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~  495 (517)
                      ++||+.+... ......+..  .............+..+++++.|+.|++||+.+++++..+.+|.+.|++++|+|++ .
T Consensus       270 ~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~-~  347 (408)
T 4a11_B          270 RLWNSSNGEN-TLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNF-Q  347 (408)
T ss_dssp             EEEETTTCCB-CCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTT-T
T ss_pred             EEEECCCCcc-ceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCC-C
Confidence            9999987632 222221111  11111122223445567777889999999999999999999999999999999999 7


Q ss_pred             EEEEeeCCCcEEEeCCCCCCC
Q 042434          496 MLASASDDHTIRIWGPCQSSE  516 (517)
Q Consensus       496 ~l~s~~~dg~v~iw~~~~~~~  516 (517)
                      +|++++.||.|++|++.++++
T Consensus       348 ~l~s~~~dg~i~iw~~~~~~~  368 (408)
T 4a11_B          348 ELYSGSRDCNILAWVPSLYEP  368 (408)
T ss_dssp             EEEEEETTSCEEEEEECC---
T ss_pred             EEEEECCCCeEEEEeCCCCCc
Confidence            999999999999999988764

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.8e-39  Score=311.39  Aligned_cols=288  Identities=13%  Similarity=0.180  Sum_probs=227.4

Q ss_pred             EeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEEC
Q 042434          217 ILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDV  296 (517)
Q Consensus       217 ~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~  296 (517)
                      .+..|.++|++++|+|+|++||+|+.||.|++|++.++ .......+.+|...|.+++|+|++++|++++.||+|++||+
T Consensus         6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~   84 (377)
T 3dwl_C            6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGN-GWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEK   84 (377)
T ss_dssp             EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETT-EEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC--
T ss_pred             eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCC-ceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence            44557889999999999999999999999999999754 22455678899999999999999999999999999999999


Q ss_pred             CCCc---EEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCe----eEeeeCcCCCceEEEEEccCCCEEE
Q 042434          297 ETGI---CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNE----IKAWRGTRIPKVLDLAVTPDGENLI  369 (517)
Q Consensus       297 ~~~~---~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~  369 (517)
                      .+++   ....+..|...|.+++|+|++++|++++.|+.  |.+|+.....    ...+...+...|.+++|+|++++++
T Consensus        85 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~--i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  162 (377)
T 3dwl_C           85 RPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARV--ISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLA  162 (377)
T ss_dssp             ----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSC--EEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEE
T ss_pred             CCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCe--EEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEE
Confidence            9887   67778899999999999999999999999999  7777776543    4555554667999999999999999


Q ss_pred             EEeCCCcEEEEECCC------------------ce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcc--
Q 042434          370 SVLSDKDIRILNLGT------------------YA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEK--  428 (517)
Q Consensus       370 ~~~~dg~i~i~d~~~------------------~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~--  428 (517)
                      +++.|+.|++||+..                  .. .....+...+.+++|+|+++++++++.|+.|++||+.+....  
T Consensus       163 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~  242 (377)
T 3dwl_C          163 AGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPR  242 (377)
T ss_dssp             EEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEE
T ss_pred             EEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcce
Confidence            999999999999852                  22 222277788999999999999999999999999999887331  


Q ss_pred             -ceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCc--e-------------------------e------
Q 042434          429 -PFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSK--P-------------------------I------  474 (517)
Q Consensus       429 -~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~--~-------------------------~------  474 (517)
                       ...+.+|...   +.++.|+|++++|++|+.++.+ +|+.....  .                         .      
T Consensus       243 ~~~~~~~~~~~---v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (377)
T 3dwl_C          243 ALITVKLSQLP---LRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFT  318 (377)
T ss_dssp             ECCCEECSSSC---EEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------
T ss_pred             eeEeecCCCCc---eEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccc
Confidence             5566677665   5566679999999999877666 66554111  0                         0      


Q ss_pred             ---EEe----------------cCCCCCeeEEEecCCCCc---EEEEeeCCCcEEEeCC
Q 042434          475 ---EIL----------------SGHSMTVNCVSWNPKRPK---MLASASDDHTIRIWGP  511 (517)
Q Consensus       475 ---~~~----------------~~h~~~v~~v~~~~~~~~---~l~s~~~dg~v~iw~~  511 (517)
                         ..+                ..|.+.|+++++.+....   .|+|||.||.|++||+
T Consensus       319 ~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          319 ALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             ------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             cccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence               001                139999999998765433   6999999999999986

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.1e-37  Score=292.53  Aligned_cols=280  Identities=19%  Similarity=0.230  Sum_probs=234.4

Q ss_pred             HHhccccccCCCC-----CccccccCCCcccccCCC-c--ccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEec
Q 042434          181 VTSQIDSCQYHNS-----SVAISLYEDHCCGRDQIP-T--ETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVL  252 (517)
Q Consensus       181 ~~~q~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~--~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~  252 (517)
                      +...+..+.+.+.     ...++...|.....+... .  .....+.+|...|.+++|+|++.++++|+.|++|++||+.
T Consensus        31 H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~  110 (321)
T 3ow8_A           31 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE  110 (321)
T ss_dssp             SSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred             CCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence            3444555555432     124455555554444332 2  2355789999999999999999999999999999999997


Q ss_pred             CCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCc
Q 042434          253 EDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTE  332 (517)
Q Consensus       253 ~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~  332 (517)
                      ++   .....+..|...+.+++|+|++++|++++.||.|++|++.+++....+..+...|.+++|+|++++|++|+.|+.
T Consensus       111 ~~---~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~  187 (321)
T 3ow8_A          111 NG---KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGI  187 (321)
T ss_dssp             TT---EEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             CC---CEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCe
Confidence            66   455677889999999999999999999999999999999999999999899999999999999999999999999


Q ss_pred             eeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEE
Q 042434          333 KGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIV  410 (517)
Q Consensus       333 v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~  410 (517)
                        |.+||..+.........+...|.+++|+|++++|++++.|+.|++||+++..  .....|...|.+++|+|++.++++
T Consensus       188 --i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s  265 (321)
T 3ow8_A          188 --INIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVS  265 (321)
T ss_dssp             --EEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             --EEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEE
Confidence              8889988665544444455689999999999999999999999999998876  455567888999999999999999


Q ss_pred             EeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecC
Q 042434          411 NLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRR  469 (517)
Q Consensus       411 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~  469 (517)
                      ++.|+.|++||+.+. .....+.+|...   +..+.|+|++++|++++.||.|++||..
T Consensus       266 ~s~D~~v~iwd~~~~-~~~~~~~~h~~~---v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          266 SSSDKSVKVWDVGTR-TCVHTFFDHQDQ---VWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             EETTSCEEEEETTTT-EEEEEECCCSSC---EEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             EeCCCcEEEEeCCCC-EEEEEEcCCCCc---EEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            999999999999877 677778788766   5566679999999999999999999963

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.1e-37  Score=330.99  Aligned_cols=294  Identities=17%  Similarity=0.231  Sum_probs=255.5

Q ss_pred             ccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEE
Q 042434          213 ETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLK  292 (517)
Q Consensus       213 ~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~  292 (517)
                      +..+.+.+|.+.|++++|+|+|++||+|+.||.|+|||+.++   .....+.+|..+|.+++|+|++++|++++.||.|+
T Consensus         4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~   80 (814)
T 3mkq_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ---VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR   80 (814)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred             ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCC---ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEE
Confidence            456788999999999999999999999999999999999765   45577889999999999999999999999999999


Q ss_pred             EEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCC-eeEeeeCcCCCceEEEEEcc-CCCEEEE
Q 042434          293 LWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGN-EIKAWRGTRIPKVLDLAVTP-DGENLIS  370 (517)
Q Consensus       293 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~  370 (517)
                      +||+.+++.+..+..|...|++++|+|+++++++++.||.  +.+|+..+. ........+...|.+++|+| ++..+++
T Consensus        81 vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~--i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~  158 (814)
T 3mkq_A           81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT--VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS  158 (814)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSE--EEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEE
T ss_pred             EEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCE--EEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEE
Confidence            9999999999999999999999999999999999999999  667776643 44333444556899999999 8899999


Q ss_pred             EeCCCcEEEEECCCce--EEee-ccCCCeeEEEEcC--CCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEee
Q 042434          371 VLSDKDIRILNLGTYA--ERVI-SEEHPITSLSVSV--DCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSC  445 (517)
Q Consensus       371 ~~~dg~i~i~d~~~~~--~~~~-~~~~~i~~~~~s~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~  445 (517)
                      ++.||.|++||+.+..  .... .+...+..++|+|  ++.++++++.||.|++||+.++ .....+.+|...   +.++
T Consensus       159 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-~~~~~~~~~~~~---v~~~  234 (814)
T 3mkq_A          159 GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK-SCVATLEGHMSN---VSFA  234 (814)
T ss_dssp             EETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT-EEEEEEECCSSC---EEEE
T ss_pred             EeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC-cEEEEEcCCCCC---EEEE
Confidence            9999999999998766  2333 3447899999999  9999999999999999999876 666777777665   5666


Q ss_pred             cCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434          446 FGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS  515 (517)
Q Consensus       446 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~  515 (517)
                      .++|+++++++++.||.|++||+.+++.+..+..|...+.+++|+|++..++++++.|+.+.+|++..+.
T Consensus       235 ~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (814)
T 3mkq_A          235 VFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE  304 (814)
T ss_dssp             EECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCS
T ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCC
Confidence            6799999999999999999999999999999999999999999999985554555667778899877644

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=6.7e-37  Score=287.35  Aligned_cols=278  Identities=21%  Similarity=0.294  Sum_probs=224.2

Q ss_pred             EEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEE
Q 042434          225 VWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHT  304 (517)
Q Consensus       225 v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~  304 (517)
                      .++++||+++ +||+| .|++|+|||+.++.... ...+.+|...|++++|+|++++|++|+.||+|++||+++++++..
T Consensus        28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~-~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~  104 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQ-LLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN  104 (318)
T ss_dssp             CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEE-EEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEE-EEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEE
Confidence            5789999986 77776 58999999998774432 234567888999999999999999999999999999999999999


Q ss_pred             eCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC--CeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEEC
Q 042434          305 FGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG--NEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL  382 (517)
Q Consensus       305 ~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  382 (517)
                      +.+|...+.++.+  ++..+++++.++.  +..|+...  ..+.... .+...+..+.++++++++++++.||.|++||+
T Consensus       105 ~~~h~~~~~~~~~--~~~~l~s~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~  179 (318)
T 4ggc_A          105 MTSHSARVGSLSW--NSYILSSGSRSGH--IHHHDVRVAEHHVATLS-GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS  179 (318)
T ss_dssp             EECCSSCEEEEEE--ETTEEEEEETTSE--EEEEETTSSSCEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSCEEEEES
T ss_pred             ecCccceEEEeec--CCCEEEEEecCCc--eEeeecCCCceeEEEEc-CccCceEEEEEcCCCCEEEEEecCcceeEEEC
Confidence            9999988877655  5679999999999  66666553  3334444 34468999999999999999999999999999


Q ss_pred             CCce------EEeeccCCCeeEEEEcCCCCEEE---EEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcE
Q 042434          383 GTYA------ERVISEEHPITSLSVSVDCKNFI---VNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTF  453 (517)
Q Consensus       383 ~~~~------~~~~~~~~~i~~~~~s~~~~~l~---~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  453 (517)
                      ++++      .....+...+..+.++|++..++   +++.++.|++||.... ....... +...   +..+.+++++..
T Consensus       180 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~-~~~~~~~-~~~~---v~~~~~~~~~~~  254 (318)
T 4ggc_A          180 APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG-ACLSAVD-AHSQ---VCSILWSPHYKE  254 (318)
T ss_dssp             SCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC-CEEEEEE-CSSC---EEEEEEETTTTE
T ss_pred             CCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccc-ccccccc-ceee---eeeeeecccccc
Confidence            8754      34455677899999999776543   5567899999999775 2222222 2222   444455777777


Q ss_pred             EEEe--cCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434          454 IASG--SENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSE  516 (517)
Q Consensus       454 l~~~--~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~  516 (517)
                      ++++  +.||.|++||+.+++++.++.+|.+.|++++|+|++ .+|+|||.||+|+|||+....|
T Consensus       255 ~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg-~~l~S~s~D~~v~iWd~~~~dP  318 (318)
T 4ggc_A          255 LISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDG-ATVASAAADETLRLWRCFELDP  318 (318)
T ss_dssp             EEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-SCEEEEETTTEEEEECCSCCCC
T ss_pred             eEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC-CEEEEEecCCeEEEEECCCCCC
Confidence            7654  489999999999999999999999999999999999 7999999999999999987654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-37  Score=304.23  Aligned_cols=287  Identities=17%  Similarity=0.234  Sum_probs=241.1

Q ss_pred             ccccCcEEEEEECCCCC-EEEEeeCCCcEEEEEe----cCCCe---eeEEEEecc----------CCCCEEEEEECCCCC
Q 042434          219 TEHKNEVWFVQFSNNGE-YLASSSSDCSAIIWKV----LEDSK---LTLKHTLRS----------HQNPVSFVAWSPDDT  280 (517)
Q Consensus       219 ~~h~~~v~~~~~s~~~~-~l~t~~~dg~i~iw~~----~~~~~---~~~~~~~~~----------h~~~v~~l~~s~~~~  280 (517)
                      ..|.+.|++++|+|+|+ +||+|+.||.|++|++    .++..   ......+..          |.+.|++++|+|+++
T Consensus        42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  121 (425)
T 1r5m_A           42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN  121 (425)
T ss_dssp             EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred             eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence            34669999999999999 9999999999999999    76541   012223333          677999999999999


Q ss_pred             eEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCc-----
Q 042434          281 KLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPK-----  355 (517)
Q Consensus       281 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~-----  355 (517)
                      +|++++.||.|++|| .+++.+..+..|...|.+++|+|++++|++++.|+.  +.+|+............+...     
T Consensus       122 ~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~  198 (425)
T 1r5m_A          122 SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENV--TILWNVISGTVMQHFELKETGGSSIN  198 (425)
T ss_dssp             EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCC--EEEEETTTTEEEEEECCC--------
T ss_pred             EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCe--EEEEECCCCcEEEEeeccccCcccee
Confidence            999999999999999 678889999999999999999999999999999999  888898755443333333233     


Q ss_pred             ----------eEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 042434          356 ----------VLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVA  423 (517)
Q Consensus       356 ----------i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~  423 (517)
                                +.+++|++++ .+++++.+|.|++||+.+..  .....+...+.+++|+|+++++++++.|+.|++||++
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~  277 (425)
T 1r5m_A          199 AENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGG  277 (425)
T ss_dssp             -------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSS
T ss_pred             eccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence                      8899999875 58899999999999999876  4555778899999999999999999999999999998


Q ss_pred             CCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCC
Q 042434          424 GKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDD  503 (517)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~d  503 (517)
                      .. .....+.+|...   +..+.++|++ ++++++.||.|++||+.+++.+..+..|...|.+++|+|++ .+|++++.|
T Consensus       278 ~~-~~~~~~~~~~~~---i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~d  351 (425)
T 1r5m_A          278 NG-NSQNCFYGHSQS---IVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDG-QKYAVAFMD  351 (425)
T ss_dssp             SB-SCSEEECCCSSC---EEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTS-SEEEEEETT
T ss_pred             CC-ccceEecCCCcc---EEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCC-CEEEEEECC
Confidence            76 566667666655   5566668899 99999999999999999999999999999999999999999 799999999


Q ss_pred             CcEEEeCCCCCC
Q 042434          504 HTIRIWGPCQSS  515 (517)
Q Consensus       504 g~v~iw~~~~~~  515 (517)
                      |.|++|++.+++
T Consensus       352 g~i~i~~~~~~~  363 (425)
T 1r5m_A          352 GQVNVYDLKKLN  363 (425)
T ss_dssp             SCEEEEECHHHH
T ss_pred             CeEEEEECCCCc
Confidence            999999987543

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=3.7e-38  Score=308.15  Aligned_cols=305  Identities=12%  Similarity=0.128  Sum_probs=245.1

Q ss_pred             ccCCCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCC
Q 042434          199 LYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPD  278 (517)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~  278 (517)
                      ..++....|+....+....+..| ..+....|+|++++|++|+.||.|++||+.++   .....+.+|...|.+++|+|+
T Consensus        75 ~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~~~~~~~  150 (420)
T 3vl1_A           75 RLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN---LQREIDQAHVSEITKLKFFPS  150 (420)
T ss_dssp             EETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSC---EEEEETTSSSSCEEEEEECTT
T ss_pred             EcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCc---ceeeecccccCccEEEEECCC
Confidence            33444555555555555556666 55556678999999999999999999998654   455677899999999999999


Q ss_pred             CCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCee-EeeeCc--CC--
Q 042434          279 DTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEI-KAWRGT--RI--  353 (517)
Q Consensus       279 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~-~~~~~~--~~--  353 (517)
                      +++|++++.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.  +.+||...... ..+..+  +.  
T Consensus       151 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~--v~iwd~~~~~~~~~~~~~~~~~~~  228 (420)
T 3vl1_A          151 GEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGT--IRLWECGTGTTIHTFNRKENPHDG  228 (420)
T ss_dssp             SSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSC--EEEEETTTTEEEEEECBTTBTTCC
T ss_pred             CCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCc--EEEeECCCCceeEEeecCCCCCCC
Confidence            999999999999999999999999999999999999999999999999999999  88889875443 333321  22  


Q ss_pred             -------------------CceEEEEEccCCCEEEEEeCCCcEEEEECCCceE---EeeccCCCeeEEEEcCCCC-EEEE
Q 042434          354 -------------------PKVLDLAVTPDGENLISVLSDKDIRILNLGTYAE---RVISEEHPITSLSVSVDCK-NFIV  410 (517)
Q Consensus       354 -------------------~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~i~~~~~s~~~~-~l~~  410 (517)
                                         ..+.+++|+|+++++++++.||.|++||+++...   ....+...+.+++|+|++. ++++
T Consensus       229 v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  308 (420)
T 3vl1_A          229 VNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYA  308 (420)
T ss_dssp             EEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEE
T ss_pred             ccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEE
Confidence                               2344455678999999999999999999998772   2234667899999999999 9999


Q ss_pred             EeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCC---------ceeEEecCCC
Q 042434          411 NLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS---------KPIEILSGHS  481 (517)
Q Consensus       411 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~---------~~~~~~~~h~  481 (517)
                      ++.||.|++||+++.......+.++...  .+..++ .+++++|++++.||.|++||+...         .....+.+|.
T Consensus       309 g~~dg~i~vwd~~~~~~~~~~~~~~~~~--~v~~~~-~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~  385 (420)
T 3vl1_A          309 GYENGMLAQWDLRSPECPVGEFLINEGT--PINNVY-FAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSND  385 (420)
T ss_dssp             EETTSEEEEEETTCTTSCSEEEEESTTS--CEEEEE-EETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSS
T ss_pred             EeCCCeEEEEEcCCCcCchhhhhccCCC--CceEEE-eCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCC
Confidence            9999999999998875556666653322  244444 457899999999999999998773         2233456788


Q ss_pred             CCeeEEEecCCCCc---EEEEeeCCCcEEEeCCCC
Q 042434          482 MTVNCVSWNPKRPK---MLASASDDHTIRIWGPCQ  513 (517)
Q Consensus       482 ~~v~~v~~~~~~~~---~l~s~~~dg~v~iw~~~~  513 (517)
                      +.|.+++|+|++ .   .+++++.+|.+.+|++..
T Consensus       386 ~~v~~~~~s~~~-~~~g~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          386 DAVSQFCYVSDD-ESNGEVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             CCCCEEEEECCS-SSSCEEEEEETTTEEEEEESCC
T ss_pred             cceEEEEEccCC-CCcceEEEEcCCceEEEEeccC
Confidence            999999999999 5   677788899999999875

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.2e-37  Score=302.44  Aligned_cols=286  Identities=19%  Similarity=0.262  Sum_probs=232.9

Q ss_pred             EEEeccccCcE--EEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEec-cCCCCEEEEEECCCCCeEEEEeCCCeE
Q 042434          215 VQILTEHKNEV--WFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLR-SHQNPVSFVAWSPDDTKLLTCGNAEVL  291 (517)
Q Consensus       215 ~~~l~~h~~~v--~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~~~dg~i  291 (517)
                      +....+|...+  .+++|++  ..+++++.||.|++|++.++...   ..+. .|...|.+++|+|++++|++|+.||.|
T Consensus        84 ~~~~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~---~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i  158 (401)
T 4aez_A           84 VLDAPGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVS---ALAETDESTYVASVKWSHDGSFLSVGLGNGLV  158 (401)
T ss_dssp             EEECTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEE---EEEECCTTCCEEEEEECTTSSEEEEEETTSCE
T ss_pred             eeeCCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEe---EeeecCCCCCEEEEEECCCCCEEEEECCCCeE
Confidence            33444777664  4456654  56888889999999999876432   3333 388999999999999999999999999


Q ss_pred             EEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCC--CCeeEeeeCcCCCceEEEEEccCCCEEE
Q 042434          292 KLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD--GNEIKAWRGTRIPKVLDLAVTPDGENLI  369 (517)
Q Consensus       292 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~  369 (517)
                      ++||+.+++.+..+..|...|.+++|+  ++.+++++.||.  |.+||..  +.....+.. +...|.+++|+|++++++
T Consensus       159 ~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~  233 (401)
T 4aez_A          159 DIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGA--IHHHDVRIANHQIGTLQG-HSSEVCGLAWRSDGLQLA  233 (401)
T ss_dssp             EEEETTTCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSE--EEEEETTSSSCEEEEEEC-CSSCEEEEEECTTSSEEE
T ss_pred             EEEECcCCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCC--EEEEecccCcceeeEEcC-CCCCeeEEEEcCCCCEEE
Confidence            999999999999999999999999994  679999999999  7888877  333444444 456899999999999999


Q ss_pred             EEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEE-Ee--CCCeEEEEEcCCCCccceEEeCcccCceEEEe
Q 042434          370 SVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIV-NL--NSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRS  444 (517)
Q Consensus       370 ~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~-~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~  444 (517)
                      +++.||.|++||+++..  .....+...+.+++|+|++..+++ ++  .|+.|++||+.++ .....+..+.    .+..
T Consensus       234 s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~-~~~~~~~~~~----~v~~  308 (401)
T 4aez_A          234 SGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG-ARVNTVDAGS----QVTS  308 (401)
T ss_dssp             EEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC-CEEEEEECSS----CEEE
T ss_pred             EEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC-CEEEEEeCCC----cEEE
Confidence            99999999999999876  344567889999999998765554 43  6999999999876 4455554322    2667


Q ss_pred             ecCCCCCcEEEE--ecCCCcEEEEecCCCceeE--EecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434          445 CFGGLDGTFIAS--GSENSQIYIWNRRNSKPIE--ILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSE  516 (517)
Q Consensus       445 ~~~s~~~~~l~~--~~~dg~i~iwd~~~~~~~~--~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~  516 (517)
                      +.|+|+++++++  |+.||.|++||+.+++...  .+.+|...|.+++|+|++ .+|++++.||.|++|++.+++.
T Consensus       309 ~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg-~~l~s~~~dg~i~iw~~~~~~~  383 (401)
T 4aez_A          309 LIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDG-RILSTAASDENLKFWRVYDGDH  383 (401)
T ss_dssp             EEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTS-SEEEEECTTSEEEEEECCC---
T ss_pred             EEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCC-CEEEEEeCCCcEEEEECCCCcc
Confidence            777999999999  5589999999999876544  467899999999999999 7999999999999999998764

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1e-37  Score=294.85  Aligned_cols=282  Identities=13%  Similarity=0.133  Sum_probs=219.5

Q ss_pred             hccccccCCCCCc-cccccCCCcccccC----------CC-cccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEE
Q 042434          183 SQIDSCQYHNSSV-AISLYEDHCCGRDQ----------IP-TETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWK  250 (517)
Q Consensus       183 ~q~~~~~~~~~~~-~~~~~~~~~~~~~~----------~~-~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~  250 (517)
                      .++..+.|+++.. .++.+++....|+.          .+ .........|...|++++|+|++ .|++|+.||+|+|||
T Consensus        31 ~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd  109 (344)
T 4gqb_B           31 RQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVELWE  109 (344)
T ss_dssp             SEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEEEEE
T ss_pred             CCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEEEEe
Confidence            3456667777766 33444433333331          01 11222334577889999999985 688999999999999


Q ss_pred             ecCCCeeeE-EEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCC-eEEEee
Q 042434          251 VLEDSKLTL-KHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSK-RLVCGS  328 (517)
Q Consensus       251 ~~~~~~~~~-~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~  328 (517)
                      +.+++.... .....+|.+.|++++|+|++++|++|+.||+|++||+.+++++..+.+|...|.+++|+|++. .|++++
T Consensus       110 ~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s  189 (344)
T 4gqb_B          110 LDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCS  189 (344)
T ss_dssp             ECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEE
T ss_pred             ccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeec
Confidence            987765433 345678999999999999999999999999999999999999999999999999999999885 688999


Q ss_pred             CCCceeEEEEeCCCC-eeEeee-CcCCCceEEEEEccC-CCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcC
Q 042434          329 SDTEKGIFMCDCDGN-EIKAWR-GTRIPKVLDLAVTPD-GENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSV  403 (517)
Q Consensus       329 ~d~~v~i~~~~~~~~-~~~~~~-~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~  403 (517)
                      .|+.  |.+||.... ....+. ..+...+.+++|+|+ ++++++|+.||.|++||+++++  .....|...|.+++|+|
T Consensus       190 ~D~~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp  267 (344)
T 4gqb_B          190 EDNR--ILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSP  267 (344)
T ss_dssp             TTSC--EEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECS
T ss_pred             cccc--cccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEcc
Confidence            9999  888888754 333332 233346899999995 5688999999999999999877  55667889999999999


Q ss_pred             CC-CEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCc-EEEEecCCCcEEEEecCCCc
Q 042434          404 DC-KNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGT-FIASGSENSQIYIWNRRNSK  472 (517)
Q Consensus       404 ~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~  472 (517)
                      ++ ++|++++.|+.|++||+.++  ....+.+|...   +.++.|+|++. +|++++.||+|++|++.+..
T Consensus       268 ~g~~~lasgs~D~~i~vwd~~~~--~~~~~~~H~~~---V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          268 HSVPFLASLSEDCSLAVLDSSLS--ELFRSQAHRDF---VRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             SSSCCEEEEETTSCEEEECTTCC--EEEEECCCSSC---EEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred             CCCeEEEEEeCCCeEEEEECCCC--cEEEEcCCCCC---EEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence            98 57899999999999999875  34556777765   66677799886 67799999999999998654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=3e-37  Score=292.95  Aligned_cols=285  Identities=14%  Similarity=0.111  Sum_probs=242.4

Q ss_pred             EEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCC-eEEEEeCCCeEEE
Q 042434          215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDT-KLLTCGNAEVLKL  293 (517)
Q Consensus       215 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~dg~i~i  293 (517)
                      .....+|.+.|++++|+|++++|++|+.||.|++|++.++........+.+|...|.+++|+|+++ +|++|+.||.|++
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~   83 (342)
T 1yfq_A            4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK   83 (342)
T ss_dssp             EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred             eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence            344568999999999999999999999999999999987763344455668999999999999999 9999999999999


Q ss_pred             EEC-CCCcEEEEeCC--CCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC---------Ce-eEeeeCcCCCceEEEE
Q 042434          294 WDV-ETGICKHTFGD--HGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG---------NE-IKAWRGTRIPKVLDLA  360 (517)
Q Consensus       294 wd~-~~~~~~~~~~~--~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~---------~~-~~~~~~~~~~~i~~~~  360 (517)
                      ||+ .+++. ..+..  |...|.+++|+| +..+++++.|+.  |.+|+...         .. +..+.  +...+.+++
T Consensus        84 wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~  157 (342)
T 1yfq_A           84 VDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGL--IEVIDPRNYGDGVIAVKNLNSNNTK--VKNKIFTMD  157 (342)
T ss_dssp             ECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSE--EEEECHHHHTTBCEEEEESCSSSSS--SCCCEEEEE
T ss_pred             EEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCe--EEEEcccccccccccccCCeeeEEe--eCCceEEEE
Confidence            999 88765 66778  999999999999 999999999999  77777653         22 22222  446899999


Q ss_pred             EccCCCEEEEEeCCCcEEEEECCC-ce----EEeeccCCCeeEEEEcC-CCCEEEEEeCCCeEEEEEcCCC-----Cccc
Q 042434          361 VTPDGENLISVLSDKDIRILNLGT-YA----ERVISEEHPITSLSVSV-DCKNFIVNLNSQEIHMWDVAGK-----WEKP  429 (517)
Q Consensus       361 ~~~~~~~l~~~~~dg~i~i~d~~~-~~----~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~-----~~~~  429 (517)
                      |+|++  +++++.++.|++||+++ ..    .....+...+.+++|+| +++++++++.||.|++|++...     ....
T Consensus       158 ~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~  235 (342)
T 1yfq_A          158 TNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR  235 (342)
T ss_dssp             ECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTC
T ss_pred             ecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccc
Confidence            99987  99999999999999988 43    34456778899999999 9999999999999999999775     3666


Q ss_pred             eEEeCccc------CceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCC-CCCeeEEEecCCCCcEEEEeeC
Q 042434          430 FKYTGHSQ------NKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGH-SMTVNCVSWNPKRPKMLASASD  502 (517)
Q Consensus       430 ~~~~~~~~------~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~v~~~~~~~~~l~s~~~  502 (517)
                      ..+..|..      ....+.++.++|++++|++|+.||.|++||+.+++++..+.+| .+.|++++  |++ .+|++++.
T Consensus       236 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~-~~l~s~s~  312 (342)
T 1yfq_A          236 FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSD-NILCLATS  312 (342)
T ss_dssp             EEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECS-SEEEEEEE
T ss_pred             eeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCC-CeEEEEec
Confidence            67777654      1224667777999999999999999999999999999999998 99999999  888 79999999


Q ss_pred             CCc-EEEeC
Q 042434          503 DHT-IRIWG  510 (517)
Q Consensus       503 dg~-v~iw~  510 (517)
                      ||. .+.|.
T Consensus       313 Dg~~~~~~~  321 (342)
T 1yfq_A          313 DDTFKTNAA  321 (342)
T ss_dssp             CTHHHHCSS
T ss_pred             CCccccccc
Confidence            999 55555

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=6.2e-38  Score=299.56  Aligned_cols=283  Identities=13%  Similarity=0.103  Sum_probs=217.4

Q ss_pred             cCcEEEEEECCCCCEEEEeeCCC-------cEEEEEecCCCe-----e--eEEEEeccCCCCEEEEEECCCCCeEEEE--
Q 042434          222 KNEVWFVQFSNNGEYLASSSSDC-------SAIIWKVLEDSK-----L--TLKHTLRSHQNPVSFVAWSPDDTKLLTC--  285 (517)
Q Consensus       222 ~~~v~~~~~s~~~~~l~t~~~dg-------~i~iw~~~~~~~-----~--~~~~~~~~h~~~v~~l~~s~~~~~l~s~--  285 (517)
                      .-+|+|++|+|||++||+|+.|.       .|++|++..+..     .  .....+.+|...|.+++++  ++.+++|  
T Consensus        14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~   91 (365)
T 4h5i_A           14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN   91 (365)
T ss_dssp             SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred             CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence            45899999999999999997643       599999865432     1  1223567888899888775  4566655  


Q ss_pred             ---------eCCCeEEEEECCCCcEE----EEe-----CCCCCceEEEEEeCCCCeEEEee--CCCceeEEEEeCCCCee
Q 042434          286 ---------GNAEVLKLWDVETGICK----HTF-----GDHGFIVSSCAWFPDSKRLVCGS--SDTEKGIFMCDCDGNEI  345 (517)
Q Consensus       286 ---------~~dg~i~iwd~~~~~~~----~~~-----~~~~~~v~~i~~~~~~~~l~~~~--~d~~v~i~~~~~~~~~~  345 (517)
                               +.|+.+++|++.++...    ...     ..+...+.+++|+|||+++++++  .|++  |++||..+...
T Consensus        92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~--i~iwd~~~~~~  169 (365)
T 4h5i_A           92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAI--MRIIDPSDLTE  169 (365)
T ss_dssp             CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCE--EEEEETTTTEE
T ss_pred             CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCE--EEEeECCCCcE
Confidence                     45778999998665322    111     13355689999999999987554  6787  88899886554


Q ss_pred             EeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceE----EeeccCCCeeEEEEcCCCCEEEEEeCCC----eE
Q 042434          346 KAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAE----RVISEEHPITSLSVSVDCKNFIVNLNSQ----EI  417 (517)
Q Consensus       346 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~i~~~~~s~~~~~l~~~~~d~----~i  417 (517)
                      ..... +...|.+++|+|+|+++++++.+ .+.+|+..++..    ....+...+.+++|+|+++.+++++.++    .+
T Consensus       170 ~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i  247 (365)
T 4h5i_A          170 KFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVL  247 (365)
T ss_dssp             EEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEE
T ss_pred             EEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEE
Confidence            43333 33579999999999999998855 466666665552    2234666799999999999999998877    68


Q ss_pred             EEEEcCCCCcc---ceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEe-cCCCCCeeEEEecCCC
Q 042434          418 HMWDVAGKWEK---PFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEIL-SGHSMTVNCVSWNPKR  493 (517)
Q Consensus       418 ~~~d~~~~~~~---~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~v~~~~~~  493 (517)
                      +.|++......   ...+.+|...   +.++.|+|||++||+|+.|++|+|||+.+++++.++ .+|...|++|+|+|||
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~---V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg  324 (365)
T 4h5i_A          248 TKISIKSGNTSVLRSKQVTNRFKG---ITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDS  324 (365)
T ss_dssp             EEEEEETTEEEEEEEEEEESSCSC---EEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTS
T ss_pred             eecccccceecceeeeeecCCCCC---eEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCC
Confidence            88998665322   2334455544   667778999999999999999999999999999875 7899999999999999


Q ss_pred             CcEEEEeeCCCcEEEeCCCCC
Q 042434          494 PKMLASASDDHTIRIWGPCQS  514 (517)
Q Consensus       494 ~~~l~s~~~dg~v~iw~~~~~  514 (517)
                       .+|||||.|++|+||++...
T Consensus       325 -~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          325 -TYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             -CEEEEEETTSEEEEEECCTT
T ss_pred             -CEEEEEeCCCeEEEEEcCCC
Confidence             79999999999999999643

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=3.4e-37  Score=293.00  Aligned_cols=295  Identities=19%  Similarity=0.256  Sum_probs=224.5

Q ss_pred             EEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCC-eeeEEEEeccCCCCEEEEEECC--CCCeEEEEeCCCeE
Q 042434          215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDS-KLTLKHTLRSHQNPVSFVAWSP--DDTKLLTCGNAEVL  291 (517)
Q Consensus       215 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~-~~~~~~~~~~h~~~v~~l~~s~--~~~~l~s~~~dg~i  291 (517)
                      ...+.+|.+.|++++|+|++++||+|+.||.|++|++.++. .......+.+|...|.+++|+|  ++++|++++.||.|
T Consensus         4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v   83 (351)
T 3f3f_A            4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV   83 (351)
T ss_dssp             CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred             cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence            34678999999999999999999999999999999997543 2356677889999999999999  69999999999999


Q ss_pred             EEEECCCC---------cEEEEeCCCCCceEEEEEeCC--CCeEEEeeCCCceeEEEEeCCCCe-eEee-----------
Q 042434          292 KLWDVETG---------ICKHTFGDHGFIVSSCAWFPD--SKRLVCGSSDTEKGIFMCDCDGNE-IKAW-----------  348 (517)
Q Consensus       292 ~iwd~~~~---------~~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~d~~v~i~~~~~~~~~-~~~~-----------  348 (517)
                      ++||+.++         +....+..|...|.+++|+|+  +.++++++.||.  |.+||..... +..+           
T Consensus        84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~  161 (351)
T 3f3f_A           84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGI--LRLYDALEPSDLRSWTLTSEMKVLSI  161 (351)
T ss_dssp             EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCE--EEEEECSSTTCTTCCEEEEEEESCSC
T ss_pred             EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCc--EEEecCCChHHhcccccccccccccc
Confidence            99999887         567888899999999999999  999999999999  7778865322 1111           


Q ss_pred             -eCcCCCceEEEEEccC---CCEEEEEeCCCcEEEEECCCce----EEeeccCCCeeEEEEcCCC----CEEEEEeCCCe
Q 042434          349 -RGTRIPKVLDLAVTPD---GENLISVLSDKDIRILNLGTYA----ERVISEEHPITSLSVSVDC----KNFIVNLNSQE  416 (517)
Q Consensus       349 -~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~i~~~~~s~~~----~~l~~~~~d~~  416 (517)
                       ...+...+.+++|+|+   +..+++++.++.+.+|+.....    .....+...|.+++|+|++    +++++++.||.
T Consensus       162 ~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~  241 (351)
T 3f3f_A          162 PPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGR  241 (351)
T ss_dssp             CCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSC
T ss_pred             ccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCe
Confidence             1134457999999997   8999999999999888877765    2334577899999999998    89999999999


Q ss_pred             EEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEe----cCCCcEEEEecCCCceeEEecCCCCCeeEEEecCC
Q 042434          417 IHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASG----SENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPK  492 (517)
Q Consensus       417 i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~  492 (517)
                      |++||++....... .......   ......++....+..+    .....+.+|+....+++..+.+|...|++++|+|+
T Consensus       242 i~iwd~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~  317 (351)
T 3f3f_A          242 IRIFKITEKLSPLA-SEESLTN---SNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLT  317 (351)
T ss_dssp             EEEEEEEECC-------------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSS
T ss_pred             EEEEeCCCCcCccc-cCCcccc---eeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCC
Confidence            99999976522221 1111111   1122223333333333    34456777777778899999999999999999999


Q ss_pred             CCcEEEEeeCCCcEEEeCCCCCCC
Q 042434          493 RPKMLASASDDHTIRIWGPCQSSE  516 (517)
Q Consensus       493 ~~~~l~s~~~dg~v~iw~~~~~~~  516 (517)
                      + .+|++++.||.|++|++.++++
T Consensus       318 ~-~~l~s~~~dg~v~iw~~~~~~~  340 (351)
T 3f3f_A          318 G-TILSSAGDDGKVRLWKATYSNE  340 (351)
T ss_dssp             S-CCEEEEETTSCEEEEEECTTSC
T ss_pred             C-CEEEEecCCCcEEEEecCcCcc
Confidence            9 7999999999999999998764

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1e-36  Score=285.92  Aligned_cols=281  Identities=17%  Similarity=0.205  Sum_probs=226.2

Q ss_pred             hccccccCCCCC--ccccccCCCcccccCCC------cccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCC
Q 042434          183 SQIDSCQYHNSS--VAISLYEDHCCGRDQIP------TETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLED  254 (517)
Q Consensus       183 ~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~------~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~  254 (517)
                      ..+..+.+.+..  ..++...|.....+...      ..++..+.+|...|++++|+|+|++|++|+.|++|++||+.++
T Consensus        18 ~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~   97 (319)
T 3frx_A           18 GWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATG   97 (319)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             ceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            344555565532  24555666655444332      3457789999999999999999999999999999999999766


Q ss_pred             CeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCC------CCeEEEee
Q 042434          255 SKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPD------SKRLVCGS  328 (517)
Q Consensus       255 ~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~------~~~l~~~~  328 (517)
                         .....+.+|...|.+++|+|++.+|++|+.|++|++||+. +.++..+.+|...|.++.|+|.      +..+++++
T Consensus        98 ---~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~  173 (319)
T 3frx_A           98 ---ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG  173 (319)
T ss_dssp             ---EEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEE
T ss_pred             ---CeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEe
Confidence               4567888999999999999999999999999999999995 5677888899999999999985      44899999


Q ss_pred             CCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCE
Q 042434          329 SDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKN  407 (517)
Q Consensus       329 ~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~  407 (517)
                      .|+.  |.+||............+...|.+++|+|+++++++++.||.|++||+.+.+ .........+.+++|+|++.+
T Consensus       174 ~d~~--i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~  251 (319)
T 3frx_A          174 NDKM--VKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYW  251 (319)
T ss_dssp             TTSC--EEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSE
T ss_pred             CCCE--EEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCE
Confidence            9999  8889988766555555566799999999999999999999999999999887 445556678999999999999


Q ss_pred             EEEEeCCCeEEEEEcCCCCccceEEeCcc-----cCceEEEeecCCCCCcEEEEecCCCcEEEEecCCC
Q 042434          408 FIVNLNSQEIHMWDVAGKWEKPFKYTGHS-----QNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS  471 (517)
Q Consensus       408 l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-----~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  471 (517)
                      +++++. +.+++|++... .....+..+.     .....+.++.|+|||++|++|+.||.|++||+.++
T Consensus       252 la~~~~-~~i~v~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          252 LAAATA-TGIKVFSLDPQ-YLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             EEEEET-TEEEEEEETTE-EEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             EEEEcC-CCcEEEEeCcC-eeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence            888775 45999998764 3333332211     11123556677999999999999999999998764

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=9.8e-37  Score=283.09  Aligned_cols=264  Identities=21%  Similarity=0.327  Sum_probs=203.3

Q ss_pred             EEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCC--CCeEEEEeCCCeEE
Q 042434          215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPD--DTKLLTCGNAEVLK  292 (517)
Q Consensus       215 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~--~~~l~s~~~dg~i~  292 (517)
                      +..+.+|.+.|++++|+|+|++||+|+.|++|+||++..+. .....++.+|.++|.+++|+|+  +++|++|+.||+|+
T Consensus         2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~-~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~   80 (297)
T 2pm7_B            2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVM   80 (297)
T ss_dssp             CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC-BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEE
T ss_pred             ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC-cEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEE
Confidence            35678999999999999999999999999999999996432 2445788999999999999864  89999999999999


Q ss_pred             EEECCCCc--EEEEeCCCCCceEEEEEeCC--CCeEEEeeCCCceeEEEEeCCCC--e-eEeeeCcCCCceEEEEEccCC
Q 042434          293 LWDVETGI--CKHTFGDHGFIVSSCAWFPD--SKRLVCGSSDTEKGIFMCDCDGN--E-IKAWRGTRIPKVLDLAVTPDG  365 (517)
Q Consensus       293 iwd~~~~~--~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~d~~v~i~~~~~~~~--~-~~~~~~~~~~~i~~~~~~~~~  365 (517)
                      +||+.+++  .+..+..|...|.+++|+|+  +.+|++++.|+.  |.+|+....  . ...+ ..+...|.+++|+|++
T Consensus        81 iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~--v~~wd~~~~~~~~~~~~-~~h~~~v~~~~~~p~~  157 (297)
T 2pm7_B           81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGK--VSVVEFKENGTTSPIII-DAHAIGVNSASWAPAT  157 (297)
T ss_dssp             EEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSE--EEEEEBCSSSCBCCEEE-ECCSSCEEEEEECCCC
T ss_pred             EEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCc--EEEEEecCCCceeeeee-ecccCccceEeecCCc
Confidence            99998874  55677789999999999997  889999999999  666666532  1 2223 3344579999999875


Q ss_pred             CEEEEEeCCCcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc---cceEEeCcccCceEE
Q 042434          366 ENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWE---KPFKYTGHSQNKYVI  442 (517)
Q Consensus       366 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~~~~~~~~~i  442 (517)
                      ..-     ++.                      ....+++++|++++.|+.|++||++....   ....+.+|...   +
T Consensus       158 ~~~-----~~~----------------------~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~---V  207 (297)
T 2pm7_B          158 IEE-----DGE----------------------HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW---V  207 (297)
T ss_dssp             ---------------------------------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC---E
T ss_pred             ccc-----ccc----------------------CCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCc---e
Confidence            211     000                      00123577888888888888888865421   33456666665   5


Q ss_pred             EeecCCCC---CcEEEEecCCCcEEEEecCCCc---eeEEe--cCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434          443 RSCFGGLD---GTFIASGSENSQIYIWNRRNSK---PIEIL--SGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ  513 (517)
Q Consensus       443 ~~~~~s~~---~~~l~~~~~dg~i~iwd~~~~~---~~~~~--~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~  513 (517)
                      ..+.|+|+   +.+|++++.|++|++||+.++.   ....+  ..|...|.+++|+|++ .+|++++.||.|++|+...
T Consensus       208 ~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          208 RDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG-NVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             EEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSS-CCEEEEETTSCEEEEEECT
T ss_pred             EEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCC-CEEEEEcCCCcEEEEEECC
Confidence            56666887   4899999999999999987643   12233  4688999999999999 7999999999999999763

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=3.6e-36  Score=298.01  Aligned_cols=285  Identities=16%  Similarity=0.260  Sum_probs=239.9

Q ss_pred             ccEEEeccccCcE-EEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeE
Q 042434          213 ETVQILTEHKNEV-WFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVL  291 (517)
Q Consensus       213 ~~~~~l~~h~~~v-~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i  291 (517)
                      .....+.+|.+.| .++.+  ++++|++|+.||+|++||+.++   .....+.+|.+.|.+++|+|++ .+++|+.||+|
T Consensus       112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~---~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i  185 (464)
T 3v7d_B          112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINK---KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTV  185 (464)
T ss_dssp             CEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECSTT-EEEEEETTSCE
T ss_pred             cceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCC---cEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCE
Confidence            3456888999885 66666  5679999999999999999765   5667888999999999999988 99999999999


Q ss_pred             EEEECCCCcEEEEeCCCCCceEEEEEe--CCCCeEEEeeCCCceeEEEEeCCCCee-----------------------E
Q 042434          292 KLWDVETGICKHTFGDHGFIVSSCAWF--PDSKRLVCGSSDTEKGIFMCDCDGNEI-----------------------K  346 (517)
Q Consensus       292 ~iwd~~~~~~~~~~~~~~~~v~~i~~~--~~~~~l~~~~~d~~v~i~~~~~~~~~~-----------------------~  346 (517)
                      ++||+.+++++..+.+|...|.+++|+  +++.++++|+.|+.  +.+|+......                       .
T Consensus       186 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (464)
T 3v7d_B          186 RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNT--LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV  263 (464)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSC--EEEEECCCCCCC------CCSSEEESCGGGCTTEE
T ss_pred             EEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCc--EEEeeCCCCcccccccccCCcceEeeccCCCeEEE
Confidence            999999999999999999999999998  57789999999999  77777764321                       1


Q ss_pred             eeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 042434          347 AWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAG  424 (517)
Q Consensus       347 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~  424 (517)
                      .....+...+.++  +++++.+++++.||.|++||+++..  .....+...+.+++|+|+++.+++++.|+.|++||+++
T Consensus       264 ~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~  341 (464)
T 3v7d_B          264 GVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN  341 (464)
T ss_dssp             EEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred             EEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence            1222333455555  6789999999999999999999887  44556788999999999999999999999999999988


Q ss_pred             CCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCC
Q 042434          425 KWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDH  504 (517)
Q Consensus       425 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg  504 (517)
                      + .....+.+|....   .++.++  +.++++|+.||.|++||+.++....... |...+..++|+|++ .++++++ ||
T Consensus       342 ~-~~~~~~~~h~~~v---~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~-~~l~~~~-dg  412 (464)
T 3v7d_B          342 G-ELMYTLQGHTALV---GLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSD-NILVSGS-EN  412 (464)
T ss_dssp             T-EEEEEECCCSSCE---EEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECS-SEEEEEE-TT
T ss_pred             C-cEEEEEeCCCCcE---EEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCC-CEEEEec-CC
Confidence            7 6777888887764   344433  6899999999999999999988776664 67788899999999 7888888 89


Q ss_pred             cEEEeCCCCCCC
Q 042434          505 TIRIWGPCQSSE  516 (517)
Q Consensus       505 ~v~iw~~~~~~~  516 (517)
                      .|++||+.+++.
T Consensus       413 ~i~iwd~~~g~~  424 (464)
T 3v7d_B          413 QFNIYNLRSGKL  424 (464)
T ss_dssp             EEEEEETTTCCE
T ss_pred             eEEEEECCCCcE
Confidence            999999998864

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=4.9e-37  Score=290.64  Aligned_cols=283  Identities=18%  Similarity=0.234  Sum_probs=235.1

Q ss_pred             ccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc
Q 042434          221 HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI  300 (517)
Q Consensus       221 h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~  300 (517)
                      |.++|.+++|+|||++++++..++.+.+|...  ..... ....+|...|.+++|+|+++++++++ ||.|++||+.++.
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~   83 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIP--RHARQ-INTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPG   83 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSSSSTTCC--SEEEE-EEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTT
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcEeccccC--Ccccc-ceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCC
Confidence            67789999999999999998888877777543  22233 33457999999999999999999998 9999999998765


Q ss_pred             EE---EEeC--CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCe--eEeeeCcCCCceEEEEEccCCCEEEEEeC
Q 042434          301 CK---HTFG--DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNE--IKAWRGTRIPKVLDLAVTPDGENLISVLS  373 (517)
Q Consensus       301 ~~---~~~~--~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  373 (517)
                      ..   ..+.  .|...|.+++|+|+++++++++.|+.  +.+|+..+..  .......+...+.+++|+|+++.+++++.
T Consensus        84 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~--i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  161 (337)
T 1gxr_A           84 NKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST--LSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS  161 (337)
T ss_dssp             CCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSE--EEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred             ceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCc--EEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeC
Confidence            32   2222  78999999999999999999999999  7778877544  33333445568999999999999999999


Q ss_pred             CCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCC
Q 042434          374 DKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDG  451 (517)
Q Consensus       374 dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~  451 (517)
                      ||.|++||+++.+  .....+...+.+++|+|+++.+++++.|+.|++||+++. .....+. +...   +..+.++|++
T Consensus       162 dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-~~~~~~~-~~~~---v~~~~~s~~~  236 (337)
T 1gxr_A          162 DGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG-RQLQQHD-FTSQ---IFSLGYCPTG  236 (337)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-EEEEEEE-CSSC---EEEEEECTTS
T ss_pred             CCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCC-ceEeeec-CCCc---eEEEEECCCC
Confidence            9999999999877  344457889999999999999999999999999999876 4444433 2222   5566779999


Q ss_pred             cEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434          452 TFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSE  516 (517)
Q Consensus       452 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~  516 (517)
                      +++++++.||.|++||+.+++.. .+..|...|.+++|+|++ .+|++++.||.|++|++.+++.
T Consensus       237 ~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~~~~~~~~  299 (337)
T 1gxr_A          237 EWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGAS  299 (337)
T ss_dssp             SEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCE
T ss_pred             CEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCC-CEEEEecCCCcEEEEECCCCeE
Confidence            99999999999999999988754 567899999999999999 7999999999999999988764

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.2e-36  Score=337.23  Aligned_cols=309  Identities=21%  Similarity=0.309  Sum_probs=260.7

Q ss_pred             CCCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECC--C
Q 042434          201 EDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP--D  278 (517)
Q Consensus       201 ~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~--~  278 (517)
                      ++....|+....+.+..+.+|.+.|++++|+|+|++||+|+.||.|+|||+.++   .....+.+|...|.+++|+|  +
T Consensus       636 d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~  712 (1249)
T 3sfz_A          636 DKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG---KLVHTYDEHSEQVNCCHFTNKSN  712 (1249)
T ss_dssp             TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECSSSS
T ss_pred             CCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCC---ceEEEEcCCCCcEEEEEEecCCC
Confidence            344556777778889999999999999999999999999999999999999766   45677889999999999999  5


Q ss_pred             CCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCee-------------
Q 042434          279 DTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEI-------------  345 (517)
Q Consensus       279 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~-------------  345 (517)
                      +.++++|+.||.|++||+.++++...+.+|...|.+++|+|+++++++++.||.  |.+||......             
T Consensus       713 ~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~--v~vwd~~~~~~~~~~~~~~~~~~~  790 (1249)
T 3sfz_A          713 HLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGT--LRLWDVRSANERKSINVKRFFLSS  790 (1249)
T ss_dssp             CCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSE--EEEEEGGGTEEEEEEECCCCC---
T ss_pred             ceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCe--EEEEeCCCCcccceeccccccccc
Confidence            568999999999999999999999999999999999999999999999999999  66666543211             


Q ss_pred             ------------------------------------------EeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECC
Q 042434          346 ------------------------------------------KAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLG  383 (517)
Q Consensus       346 ------------------------------------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  383 (517)
                                                                ......+...+.+++|+|+++.+++++.+|.|++||+.
T Consensus       791 ~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~  870 (1249)
T 3sfz_A          791 EDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNID  870 (1249)
T ss_dssp             -----CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETT
T ss_pred             CCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcC
Confidence                                                      11122445678999999999999999999999999999


Q ss_pred             Cce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcc----------------------------ceEEe
Q 042434          384 TYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEK----------------------------PFKYT  433 (517)
Q Consensus       384 ~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~----------------------------~~~~~  433 (517)
                      ++.  .....|...|.+++|+|+++.+++++.|+.|++||+.+....                            .....
T Consensus       871 ~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  950 (1249)
T 3sfz_A          871 SRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIA  950 (1249)
T ss_dssp             TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEE
T ss_pred             CCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEe
Confidence            887  455678889999999999999999999999999997531000                            00000


Q ss_pred             Cccc-----CceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEE
Q 042434          434 GHSQ-----NKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRI  508 (517)
Q Consensus       434 ~~~~-----~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~i  508 (517)
                      +...     ....+.++.++|+++++++|+.||.|++||+.+++....+.+|...|++++|+|++ .++++++.||.|++
T Consensus       951 ~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~s~~~dg~i~v 1029 (1249)
T 3sfz_A          951 GKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADG-KTLISSSEDSVIQV 1029 (1249)
T ss_dssp             ESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSS-SCEEEECSSSBEEE
T ss_pred             cCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCC-CEEEEEcCCCEEEE
Confidence            0000     11235667779999999999999999999999999999999999999999999999 79999999999999


Q ss_pred             eCCCCCC
Q 042434          509 WGPCQSS  515 (517)
Q Consensus       509 w~~~~~~  515 (517)
                      |++.+++
T Consensus      1030 wd~~~~~ 1036 (1249)
T 3sfz_A         1030 WNWQTGD 1036 (1249)
T ss_dssp             EETTTTE
T ss_pred             EECCCCc
Confidence            9998764

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1e-36  Score=290.13  Aligned_cols=281  Identities=21%  Similarity=0.276  Sum_probs=235.1

Q ss_pred             HHhccccccCCCCCc-cccccCCC-cccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCC---
Q 042434          181 VTSQIDSCQYHNSSV-AISLYEDH-CCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDS---  255 (517)
Q Consensus       181 ~~~q~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~---  255 (517)
                      +...+.++.|+++.. .++...|. ...|+..+.+....+..|...|.+++|+|+|.+|++|+.|+.+++|++....   
T Consensus        63 H~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~  142 (354)
T 2pbi_B           63 HGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNEN  142 (354)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCC
T ss_pred             CCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecccccc
Confidence            345567777877655 44444454 5567777788888999999999999999999999999999999999985431   


Q ss_pred             eeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeC--CCCeEEEeeCCCce
Q 042434          256 KLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFP--DSKRLVCGSSDTEK  333 (517)
Q Consensus       256 ~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~~d~~v  333 (517)
                      .......+.+|...|.+++|+|++..|++++.|++|++||+++++++..+.+|...|.+++|+|  ++++|++|+.||. 
T Consensus       143 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~-  221 (354)
T 2pbi_B          143 MAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKK-  221 (354)
T ss_dssp             SGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSC-
T ss_pred             ccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCe-
Confidence            1123355678999999999999999999999999999999999999999999999999999988  4789999999999 


Q ss_pred             eEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceE-Eeec---cCCCeeEEEEcCCCCEEE
Q 042434          334 GIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAE-RVIS---EEHPITSLSVSVDCKNFI  409 (517)
Q Consensus       334 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~---~~~~i~~~~~s~~~~~l~  409 (517)
                       |.+||............+...|.+++|+|++..+++++.|++|++||+++... ....   ....+.+++|+|++.+++
T Consensus       222 -v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~  300 (354)
T 2pbi_B          222 -AMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLF  300 (354)
T ss_dssp             -EEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEE
T ss_pred             -EEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEE
Confidence             88899876554444444556899999999999999999999999999998762 2222   234688999999999999


Q ss_pred             EEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEe
Q 042434          410 VNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWN  467 (517)
Q Consensus       410 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd  467 (517)
                      +++.|+.|++||+.++ .....+.+|...   +.++.|+|+|++|++|+.||+|++|+
T Consensus       301 ~g~~d~~i~vwd~~~~-~~~~~l~~h~~~---v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          301 AGYNDYTINVWDVLKG-SRVSILFGHENR---VSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EEETTSCEEEEETTTC-SEEEEECCCSSC---EEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EEECCCcEEEEECCCC-ceEEEEECCCCc---EEEEEECCCCCEEEEEcCCCCEEecC
Confidence            9999999999999776 566677788766   66667799999999999999999996

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=2.6e-36  Score=289.26  Aligned_cols=297  Identities=15%  Similarity=0.260  Sum_probs=242.8

Q ss_pred             ccCCCcccEEEeccccCcEEEEEECCC---CCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEE
Q 042434          207 RDQIPTETVQILTEHKNEVWFVQFSNN---GEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLL  283 (517)
Q Consensus       207 ~~~~~~~~~~~l~~h~~~v~~~~~s~~---~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~  283 (517)
                      ....|.+.+..+.+|.+.|++++|+|+   |++|++|+.||.|++|++.+... .....+.+|...|.+++|+|++++|+
T Consensus        24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~  102 (368)
T 3mmy_A           24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ-TIPKAQQMHTGPVLDVCWSDDGSKVF  102 (368)
T ss_dssp             CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC-EEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred             CCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc-eeEEEeccccCCEEEEEECcCCCEEE
Confidence            345677888899999999999999998   69999999999999999976322 34467788999999999999999999


Q ss_pred             EEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEE--eCCCCeEEEeeCCCceeEEEEeCCCC-eeEeeeCcCCCceEEEE
Q 042434          284 TCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAW--FPDSKRLVCGSSDTEKGIFMCDCDGN-EIKAWRGTRIPKVLDLA  360 (517)
Q Consensus       284 s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~--~~~~~~l~~~~~d~~v~i~~~~~~~~-~~~~~~~~~~~~i~~~~  360 (517)
                      +++.||.|++||+.+++.... ..|...|.+++|  +|++.+|++++.||.  |.+||.... .+..+..+.  .+.++.
T Consensus       103 s~~~dg~v~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~--i~vwd~~~~~~~~~~~~~~--~~~~~~  177 (368)
T 3mmy_A          103 TASCDKTAKMWDLSSNQAIQI-AQHDAPVKTIHWIKAPNYSCVMTGSWDKT--LKFWDTRSSNPMMVLQLPE--RCYCAD  177 (368)
T ss_dssp             EEETTSEEEEEETTTTEEEEE-EECSSCEEEEEEEECSSCEEEEEEETTSE--EEEECSSCSSCSEEEECSS--CEEEEE
T ss_pred             EEcCCCcEEEEEcCCCCceee-ccccCceEEEEEEeCCCCCEEEEccCCCc--EEEEECCCCcEEEEEecCC--CceEEE
Confidence            999999999999999987764 479999999999  889999999999999  888888653 344444433  555665


Q ss_pred             EccCCCEEEEEeCCCcEEEEECCCceE----EeeccCCCeeEEEEcCCCCE----EEEEeCCCeEEEEEcCCCC--ccce
Q 042434          361 VTPDGENLISVLSDKDIRILNLGTYAE----RVISEEHPITSLSVSVDCKN----FIVNLNSQEIHMWDVAGKW--EKPF  430 (517)
Q Consensus       361 ~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~i~~~~~s~~~~~----l~~~~~d~~i~~~d~~~~~--~~~~  430 (517)
                      +.  +..+++++.++.+.+||++....    ..........++.+.++...    +++++.|+.|++||++...  ....
T Consensus       178 ~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~  255 (368)
T 3mmy_A          178 VI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNF  255 (368)
T ss_dssp             EE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSE
T ss_pred             ec--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccce
Confidence            55  45889999999999999987652    22234456677777666554    9999999999999997653  3445


Q ss_pred             EEeCcccCc---------eEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEee
Q 042434          431 KYTGHSQNK---------YVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS  501 (517)
Q Consensus       431 ~~~~~~~~~---------~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~  501 (517)
                      .+.+|....         ..+.++.++|++++|++|+.||.|++||+.+++++..+.+|...|++++|+|++ .+|++++
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~s  334 (368)
T 3mmy_A          256 TFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNG-NIFAYAS  334 (368)
T ss_dssp             EEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTS-SCEEEEE
T ss_pred             eeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCC-CeEEEEe
Confidence            566655421         136677789999999999999999999999999999999999999999999999 7999999


Q ss_pred             CCCcEEEeCCC
Q 042434          502 DDHTIRIWGPC  512 (517)
Q Consensus       502 ~dg~v~iw~~~  512 (517)
                      .|+..+.|++-
T Consensus       335 ~d~~~~~~~~~  345 (368)
T 3mmy_A          335 SYDWSKGHEFY  345 (368)
T ss_dssp             CCCSTTCGGGC
T ss_pred             ccccccccccc
Confidence            98866655543

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.3e-36  Score=286.83  Aligned_cols=288  Identities=21%  Similarity=0.292  Sum_probs=218.6

Q ss_pred             ccccccCCCCCc-cccccCCCcc-cccCCCccc---EEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeee
Q 042434          184 QIDSCQYHNSSV-AISLYEDHCC-GRDQIPTET---VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLT  258 (517)
Q Consensus       184 q~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~---~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~  258 (517)
                      .+..+.|++... .++...|... .|+......   .....+|.+.|++++|+|+|++|++|+.|++|++|+...+ ...
T Consensus        18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~-~~~   96 (345)
T 3fm0_A           18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQD-DFE   96 (345)
T ss_dssp             CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC--EE
T ss_pred             cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCC-CeE
Confidence            344566776655 3344445444 444333322   2234789999999999999999999999999999998654 335


Q ss_pred             EEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc---EEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeE
Q 042434          259 LKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI---CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGI  335 (517)
Q Consensus       259 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i  335 (517)
                      ....+.+|...|.+++|+|++++|++|+.|++|++||+.++.   ++..+..|...|.+++|+|++.+|++++.|+.  |
T Consensus        97 ~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~--i  174 (345)
T 3fm0_A           97 CVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDT--V  174 (345)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSC--E
T ss_pred             EEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCc--E
Confidence            667889999999999999999999999999999999998763   46678899999999999999999999999999  5


Q ss_pred             EEEeCCCCe--eEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-----------------EEee-ccCCC
Q 042434          336 FMCDCDGNE--IKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-----------------ERVI-SEEHP  395 (517)
Q Consensus       336 ~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------------~~~~-~~~~~  395 (517)
                      .+|+.....  .......+...|.+++|+|++++|++++.|++|++||.....                 .... .+...
T Consensus       175 ~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  254 (345)
T 3fm0_A          175 KLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRT  254 (345)
T ss_dssp             EEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSC
T ss_pred             EEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCc
Confidence            666655432  222333455689999999999999999999999999963211                 0111 26678


Q ss_pred             eeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc---cceEE-----eCcccCceEEEeecCCCCC-cEEEEecCCCcEEEE
Q 042434          396 ITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWE---KPFKY-----TGHSQNKYVIRSCFGGLDG-TFIASGSENSQIYIW  466 (517)
Q Consensus       396 i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~---~~~~~-----~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iw  466 (517)
                      |.+++|+|++..+++++.|+.|++|+......   ....+     .+|...   +.++.|+|++ .+|++|+.||+|++|
T Consensus       255 v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~---V~~v~~~p~~~~~laS~s~Dg~v~~W  331 (345)
T 3fm0_A          255 IYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQD---VNCVAWNPKEPGLLASCSDDGEVAFW  331 (345)
T ss_dssp             EEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSC---EEEEEECSSSTTEEEEEETTSCEEEE
T ss_pred             EEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCc---EeEeEEeCCCceEEEEcCCCCcEEEE
Confidence            99999999999999999999999999865421   11111     244443   6777779987 599999999999999


Q ss_pred             ecCCCceeEEe
Q 042434          467 NRRNSKPIEIL  477 (517)
Q Consensus       467 d~~~~~~~~~~  477 (517)
                      ++.+++.....
T Consensus       332 ~~~~~~~~~~~  342 (345)
T 3fm0_A          332 KYQRPEGLHHH  342 (345)
T ss_dssp             EECC-------
T ss_pred             EecCCCCcccc
Confidence            99988765543

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=3.1e-36  Score=333.86  Aligned_cols=289  Identities=24%  Similarity=0.353  Sum_probs=252.2

Q ss_pred             cEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEE
Q 042434          214 TVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKL  293 (517)
Q Consensus       214 ~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i  293 (517)
                      ....+.+|.+.|++++|+|+|++||+|+.||+|++||+.++   .....+.+|.+.|.+++|+|++++|++++.||+|++
T Consensus       607 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~---~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~v  683 (1249)
T 3sfz_A          607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETG---EKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKI  683 (1249)
T ss_dssp             CSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             ceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCC---CEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEE
Confidence            45578899999999999999999999999999999999766   455778899999999999999999999999999999


Q ss_pred             EECCCCcEEEEeCCCCCceEEEEEeC--CCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEE
Q 042434          294 WDVETGICKHTFGDHGFIVSSCAWFP--DSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISV  371 (517)
Q Consensus       294 wd~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  371 (517)
                      ||+.+++.+..+..|...|.+++|+|  ++..+++|+.|+.  |.+||..+.........+.+.|.+++|+|+++.++++
T Consensus       684 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~--v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~  761 (1249)
T 3sfz_A          684 WDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF--LKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASC  761 (1249)
T ss_dssp             EETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSC--EEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEE
T ss_pred             EECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCe--EEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEE
Confidence            99999999999999999999999999  5568999999999  8888988655544444566799999999999999999


Q ss_pred             eCCCcEEEEECCCceE-Eee--------------ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcc
Q 042434          372 LSDKDIRILNLGTYAE-RVI--------------SEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHS  436 (517)
Q Consensus       372 ~~dg~i~i~d~~~~~~-~~~--------------~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~  436 (517)
                      +.||.|++||+.+... ...              .....+.+++|+|+++.+++++ ++.+.+||+.+.........+|.
T Consensus       762 s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~~~  840 (1249)
T 3sfz_A          762 SADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTGHH  840 (1249)
T ss_dssp             ESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEECSSS
T ss_pred             ECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcCCCC
Confidence            9999999999987762 111              1123688999999999999887 68999999988744444444665


Q ss_pred             cCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCC
Q 042434          437 QNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPC  512 (517)
Q Consensus       437 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~  512 (517)
                      ..   +.++.++|+++++++++.||.|++||+.++..+..+.+|.+.|++++|+|++ ..+++++.||.|++|++.
T Consensus       841 ~~---v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg-~~l~s~s~dg~v~vw~~~  912 (1249)
T 3sfz_A          841 ST---IQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDG-SSFLTASDDQTIRVWETK  912 (1249)
T ss_dssp             SC---CCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEHH
T ss_pred             Cc---eEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCC-CEEEEEeCCCeEEEEEcc
Confidence            55   4556669999999999999999999999999999999999999999999999 799999999999999965

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=2.7e-36  Score=297.41  Aligned_cols=285  Identities=16%  Similarity=0.315  Sum_probs=228.6

Q ss_pred             cccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCC--------eeeEEEEeccCC------------CCEEEEEECCCC
Q 042434          220 EHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDS--------KLTLKHTLRSHQ------------NPVSFVAWSPDD  279 (517)
Q Consensus       220 ~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~--------~~~~~~~~~~h~------------~~v~~l~~s~~~  279 (517)
                      .|.+.|++++|+|+|++||+|+.||.|+||++.++.        .......+.+|.            ..|.+++|+|++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            478999999999999999999999999999997553        233567888998            889999999998


Q ss_pred             --CeEEEEeCCCeEEEEECCCCcEE---------------------------------------EE-eCCCCCceEEEEE
Q 042434          280 --TKLLTCGNAEVLKLWDVETGICK---------------------------------------HT-FGDHGFIVSSCAW  317 (517)
Q Consensus       280 --~~l~s~~~dg~i~iwd~~~~~~~---------------------------------------~~-~~~~~~~v~~i~~  317 (517)
                        ..|++++.||+|++||+.++...                                       .. ..+|...|.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence              79999999999999999765432                                       12 3579999999999


Q ss_pred             eCCCCeEEEeeCCCceeEEEEeCC-CC-eeEee------eCcCCCceEEEEEccCC-CEEEEEeCCCcEEEEECCCceE-
Q 042434          318 FPDSKRLVCGSSDTEKGIFMCDCD-GN-EIKAW------RGTRIPKVLDLAVTPDG-ENLISVLSDKDIRILNLGTYAE-  387 (517)
Q Consensus       318 ~~~~~~l~~~~~d~~v~i~~~~~~-~~-~~~~~------~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~-  387 (517)
                      +|++++|++| .|+.  |.+||.. +. ....+      ...+...|.+++|+|++ +.+++++.||.|++||+++... 
T Consensus       186 ~~~~~~l~s~-~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~  262 (447)
T 3dw8_B          186 NSDYETYLSA-DDLR--INLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC  262 (447)
T ss_dssp             CTTSSEEEEE-CSSE--EEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS
T ss_pred             cCCCCEEEEe-CCCe--EEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc
Confidence            9999999998 7998  8888887 32 22221      23455689999999998 9999999999999999988652 


Q ss_pred             ----E-eeccCC------------CeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCce----------
Q 042434          388 ----R-VISEEH------------PITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKY----------  440 (517)
Q Consensus       388 ----~-~~~~~~------------~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~----------  440 (517)
                          . ...+..            .+.+++|+|+++++++++. +.|++||++........+.+|.....          
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  341 (447)
T 3dw8_B          263 DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDC  341 (447)
T ss_dssp             CTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSG
T ss_pred             cceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccc
Confidence                2 223333            8999999999999999999 99999999874467777777753211          


Q ss_pred             --EEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEec---------------------------------CCCCCee
Q 042434          441 --VIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILS---------------------------------GHSMTVN  485 (517)
Q Consensus       441 --~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---------------------------------~h~~~v~  485 (517)
                        .+..+.|+|++++|++|+.||.|++||+.+++.+. +.                                 .+...|.
T Consensus       342 i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  420 (447)
T 3dw8_B          342 IFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKIL  420 (447)
T ss_dssp             GGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCC
T ss_pred             cccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCcccccccccccccCCcee
Confidence              11125569999999999999999999999987653 22                                 2345788


Q ss_pred             EEEecCCCCcEEEEeeCCCcEEEeCC
Q 042434          486 CVSWNPKRPKMLASASDDHTIRIWGP  511 (517)
Q Consensus       486 ~v~~~~~~~~~l~s~~~dg~v~iw~~  511 (517)
                      +++|+|++ .+||+++.++ +++|.-
T Consensus       421 ~~~~~p~~-~~la~~~~~~-~~~~~~  444 (447)
T 3dw8_B          421 HTAWHPKE-NIIAVATTNN-LYIFQD  444 (447)
T ss_dssp             EEEECSSS-SEEEEECSSC-EEEEEC
T ss_pred             EEEECCCC-CEEEEEecce-eeeecc
Confidence            99999999 7898888876 777754

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=5.1e-36  Score=289.81  Aligned_cols=283  Identities=19%  Similarity=0.310  Sum_probs=227.3

Q ss_pred             HhccccccCCCCCc-cccccCCCcccccCCCcccEEEeccccC------------------cEEEEEECCCCCEEEEeeC
Q 042434          182 TSQIDSCQYHNSSV-AISLYEDHCCGRDQIPTETVQILTEHKN------------------EVWFVQFSNNGEYLASSSS  242 (517)
Q Consensus       182 ~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~h~~------------------~v~~~~~s~~~~~l~t~~~  242 (517)
                      ...+.++.|+++.. ..+..++....|+....+.+..+.+|..                  .|++++|+|+|++|++|+.
T Consensus        64 ~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~  143 (393)
T 1erj_A           64 TSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAE  143 (393)
T ss_dssp             SSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEET
T ss_pred             CCEEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcC
Confidence            34456667777665 2333344455566566667777766543                  4999999999999999999


Q ss_pred             CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeC-CC
Q 042434          243 DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFP-DS  321 (517)
Q Consensus       243 dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~~  321 (517)
                      ||.|++||+.++   .....+.+|...|.+++|+|++++|++++.|++|++||+.++++...+. +...+.+++|+| ++
T Consensus       144 d~~i~iwd~~~~---~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~  219 (393)
T 1erj_A          144 DRLIRIWDIENR---KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDG  219 (393)
T ss_dssp             TSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTC
T ss_pred             CCeEEEEECCCC---cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCC
Confidence            999999999755   5567889999999999999999999999999999999999999888774 567899999999 89


Q ss_pred             CeEEEeeCCCceeEEEEeCCCCee-Eeee------CcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--------
Q 042434          322 KRLVCGSSDTEKGIFMCDCDGNEI-KAWR------GTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--------  386 (517)
Q Consensus       322 ~~l~~~~~d~~v~i~~~~~~~~~~-~~~~------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------  386 (517)
                      +++++|+.|+.  |.+||...... ..+.      ..+...|.+++|+|+++++++++.|+.|++||+++..        
T Consensus       220 ~~l~~~s~d~~--v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~  297 (393)
T 1erj_A          220 KYIAAGSLDRA--VRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP  297 (393)
T ss_dssp             CEEEEEETTSC--EEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------------
T ss_pred             CEEEEEcCCCc--EEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCC
Confidence            99999999999  88888875443 3321      3455689999999999999999999999999997532        


Q ss_pred             ------EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeec---CCCCCcEEEEe
Q 042434          387 ------ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCF---GGLDGTFIASG  457 (517)
Q Consensus       387 ------~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~---~s~~~~~l~~~  457 (517)
                            .....|...|.+++|+|++.++++++.|+.|++||+.++ .....+.+|......+....   ++|++++|++|
T Consensus       298 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~-~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sg  376 (393)
T 1erj_A          298 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG-NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATG  376 (393)
T ss_dssp             ---CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEE
T ss_pred             CCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC-eEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEE
Confidence                  234567788999999999999999999999999999887 66778888887755554332   45689999999


Q ss_pred             cCCCcEEEEecCCC
Q 042434          458 SENSQIYIWNRRNS  471 (517)
Q Consensus       458 ~~dg~i~iwd~~~~  471 (517)
                      +.||+|++|++...
T Consensus       377 s~Dg~i~iW~~~~~  390 (393)
T 1erj_A          377 SGDCKARIWKYKKI  390 (393)
T ss_dssp             ETTSEEEEEEEEEC
T ss_pred             CCCCcEEECccccc
Confidence            99999999998643

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=8.4e-36  Score=293.62  Aligned_cols=301  Identities=17%  Similarity=0.291  Sum_probs=252.2

Q ss_pred             cccccCCCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEE
Q 042434          196 AISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAW  275 (517)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~  275 (517)
                      ..+..++....|+....+.+..+.+|.+.|++++|+  ++++++|+.||+|++||+.++   .....+.+|...|.+++|
T Consensus       133 ~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~~~~  207 (445)
T 2ovr_B          133 VSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETG---ECIHTLYGHTSTVRCMHL  207 (445)
T ss_dssp             EEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEE
T ss_pred             EEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcC---cEEEEECCCCCcEEEEEe
Confidence            334444556677777788999999999999999997  569999999999999999766   556788899999999999


Q ss_pred             CCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCc
Q 042434          276 SPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPK  355 (517)
Q Consensus       276 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~  355 (517)
                      +  ++.+++|+.||+|++||+.+++.+..+..|...|.+++|  ++..+++|+.||.  |.+||............+...
T Consensus       208 ~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~  281 (445)
T 2ovr_B          208 H--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFM--VKVWDPETETCLHTLQGHTNR  281 (445)
T ss_dssp             E--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSC--EEEEEGGGTEEEEEECCCSSC
T ss_pred             c--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCE--EEEEECCCCcEeEEecCCCCc
Confidence            5  678999999999999999999999999999999999999  7889999999999  888888765544444445568


Q ss_pred             eEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEe
Q 042434          356 VLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYT  433 (517)
Q Consensus       356 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~  433 (517)
                      +.++.+  ++..+++++.||.|++||+++++  .....+...+.++.+  +++++++++.||.|++||++++ .....+.
T Consensus       282 v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~  356 (445)
T 2ovr_B          282 VYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTG-QCLQTLQ  356 (445)
T ss_dssp             EEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTC-CEEEEEC
T ss_pred             eEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCC-cEEEEEc
Confidence            999998  88899999999999999999887  334456666776666  5679999999999999999876 5666666


Q ss_pred             CcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEe-----cCCCCCeeEEEecCCCCcEEEEeeCCCc---
Q 042434          434 GHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEIL-----SGHSMTVNCVSWNPKRPKMLASASDDHT---  505 (517)
Q Consensus       434 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~h~~~v~~v~~~~~~~~~l~s~~~dg~---  505 (517)
                      ++......+.++.+  +++++++|+.||.|++||+.+++.+..+     .+|.+.|++++|+|++ .++++|+.||+   
T Consensus       357 ~~~~~~~~v~~~~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~la~~~~dg~~~~  433 (445)
T 2ovr_B          357 GPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTK-LVCAVGSRNGTEET  433 (445)
T ss_dssp             STTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSE-EEEEEECSSSSSCC
T ss_pred             cCCCCCCCEEEEEE--CCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCE-EEEEEcccCCCCcc
Confidence            63333333555544  5789999999999999999999998888     4688999999999999 79999999998   


Q ss_pred             -EEEeCCCCCC
Q 042434          506 -IRIWGPCQSS  515 (517)
Q Consensus       506 -v~iw~~~~~~  515 (517)
                       |.+||+....
T Consensus       434 ~l~v~df~~~~  444 (445)
T 2ovr_B          434 KLLVLDFDVDM  444 (445)
T ss_dssp             EEEEEECCCCC
T ss_pred             EEEEEECCCCC
Confidence             9999998643

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=5.6e-36  Score=307.46  Aligned_cols=318  Identities=21%  Similarity=0.264  Sum_probs=258.3

Q ss_pred             hccccccCCCCCc-cccccCCCcccccCCCc----ccEEEeccccCc-EEEEEECC--CCCEEEEeeCCCcEEEEEecCC
Q 042434          183 SQIDSCQYHNSSV-AISLYEDHCCGRDQIPT----ETVQILTEHKNE-VWFVQFSN--NGEYLASSSSDCSAIIWKVLED  254 (517)
Q Consensus       183 ~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~l~~h~~~-v~~~~~s~--~~~~l~t~~~dg~i~iw~~~~~  254 (517)
                      ..+..+.++++.. .+...++....|+....    +....+.+|.+. |++++|+|  ++++||+|+.||.|++||+.++
T Consensus        19 ~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~   98 (615)
T 1pgu_A           19 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFD   98 (615)
T ss_dssp             TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEE
T ss_pred             CceeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCC
Confidence            4456666776665 22333444555655556    789999999999 99999999  9999999999999999999643


Q ss_pred             C-----eeeEEEEeccCCCCEEEEEECCCCCeEEEEeCC----CeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCC-eE
Q 042434          255 S-----KLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNA----EVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSK-RL  324 (517)
Q Consensus       255 ~-----~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l  324 (517)
                      .     .......+..|...|.+++|+|++++|++++.+    +.|.+||  +++.+..+..|...|.+++|+|++. .+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l  176 (615)
T 1pgu_A           99 KESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRS  176 (615)
T ss_dssp             GGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEE
T ss_pred             cccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEE
Confidence            1     235667788899999999999999999999987    6888888  6788889999999999999999998 89


Q ss_pred             EEeeCCCceeEEEEeCCCCeeEeeeCcCCC---ceEEEEEccC-CCEEEEEeCCCcEEEEECCCce-EEee-----ccCC
Q 042434          325 VCGSSDTEKGIFMCDCDGNEIKAWRGTRIP---KVLDLAVTPD-GENLISVLSDKDIRILNLGTYA-ERVI-----SEEH  394 (517)
Q Consensus       325 ~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~-~~~~-----~~~~  394 (517)
                      ++++.|+.  +.+|+............+..   .|.+++|+|+ ++++++++.||.|++||+.+++ ....     .+..
T Consensus       177 ~~~~~d~~--v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  254 (615)
T 1pgu_A          177 MTVGDDGS--VVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQG  254 (615)
T ss_dssp             EEEETTTE--EEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCS
T ss_pred             EEEeCCCc--EEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCC
Confidence            99999999  88889886655444444556   7999999999 9999999999999999998877 3333     6788


Q ss_pred             CeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCccc-CceEEEeecCCCCCcEEEEecCCCcEEEEecCCCce
Q 042434          395 PITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQ-NKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKP  473 (517)
Q Consensus       395 ~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  473 (517)
                      .+.+++|+ +++++++++.|+.|++||+++. .....+..+.. ....+..+.+ +++.++++++.||.|++||+.++++
T Consensus       255 ~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~g~i~~~d~~~~~~  331 (615)
T 1pgu_A          255 GIFALSWL-DSQKFATVGADATIRVWDVTTS-KCVQKWTLDKQQLGNQQVGVVA-TGNGRIISLSLDGTLNFYELGHDEV  331 (615)
T ss_dssp             CEEEEEES-SSSEEEEEETTSEEEEEETTTT-EEEEEEECCTTCGGGCEEEEEE-EETTEEEEEETTSCEEEEETTEEEE
T ss_pred             ceEEEEEc-CCCEEEEEcCCCcEEEEECCCC-cEEEEEcCCCCcccCceeEEEe-CCCCeEEEEECCCCEEEEECCCCcE
Confidence            99999999 9999999999999999999876 55556655521 1112333333 3899999999999999999999999


Q ss_pred             eEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCC
Q 042434          474 IEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPC  512 (517)
Q Consensus       474 ~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~  512 (517)
                      +..+.+|...|++++| |+    +++++.||.|++|++.
T Consensus       332 ~~~~~~~~~~v~~~~~-~~----l~~~~~dg~i~~w~~~  365 (615)
T 1pgu_A          332 LKTISGHNKGITALTV-NP----LISGSYDGRIMEWSSS  365 (615)
T ss_dssp             EEEECCCSSCEEEEET-TT----TEEEETTSCEEETTTT
T ss_pred             EEEEeCCCCCEEEEEe-cC----cEEECCCCeEEEEEch
Confidence            9999999999988888 76    6666667777776653

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.6e-37  Score=303.72  Aligned_cols=279  Identities=16%  Similarity=0.172  Sum_probs=227.1

Q ss_pred             cEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEE
Q 042434          224 EVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKH  303 (517)
Q Consensus       224 ~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~  303 (517)
                      .+++++|+|+|++|++|+.||.|++||+.++..   ...+..| ..+....|+|++++|++|+.||.|++||+.+++...
T Consensus        58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~---~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  133 (420)
T 3vl1_A           58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDG---SKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQRE  133 (420)
T ss_dssp             CCTTCEEEEEETTEEEEEETTEEEEEECCSEET---TTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEE
T ss_pred             cccceeeeecCCeEEEEEcCCcEEEEEecccce---eeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceee
Confidence            345789999999999999999999999864422   2233344 445556789999999999999999999999999999


Q ss_pred             EeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCC-eeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEEC
Q 042434          304 TFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGN-EIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL  382 (517)
Q Consensus       304 ~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  382 (517)
                      .+..|...|.+++|+|++++|++++.|+.  |.+||.... .+..+. .+...|.+++|+|+++.+++++.||.|++||+
T Consensus       134 ~~~~h~~~v~~~~~~~~~~~l~s~s~d~~--i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~  210 (420)
T 3vl1_A          134 IDQAHVSEITKLKFFPSGEALISSSQDMQ--LKIWSVKDGSNPRTLI-GHRATVTDIAIIDRGRNVLSASLDGTIRLWEC  210 (420)
T ss_dssp             ETTSSSSCEEEEEECTTSSEEEEEETTSE--EEEEETTTCCCCEEEE-CCSSCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred             ecccccCccEEEEECCCCCEEEEEeCCCe--EEEEeCCCCcCceEEc-CCCCcEEEEEEcCCCCEEEEEcCCCcEEEeEC
Confidence            88999999999999999999999999999  888888754 444444 44568999999999999999999999999999


Q ss_pred             CCceE-Eeec----c---------------------CCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcc
Q 042434          383 GTYAE-RVIS----E---------------------EHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHS  436 (517)
Q Consensus       383 ~~~~~-~~~~----~---------------------~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~  436 (517)
                      ++++. ....    +                     ...+.+++|+|+++++++++.||.|++||+++..........|.
T Consensus       211 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  290 (420)
T 3vl1_A          211 GTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFT  290 (420)
T ss_dssp             TTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTS
T ss_pred             CCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccC
Confidence            98772 2221    2                     24455566689999999999999999999988733333333444


Q ss_pred             cCceEEEeecCCCCCc-EEEEecCCCcEEEEecCCCc-eeEEecC-CCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434          437 QNKYVIRSCFGGLDGT-FIASGSENSQIYIWNRRNSK-PIEILSG-HSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ  513 (517)
Q Consensus       437 ~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~-~~~~~~~-h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~  513 (517)
                      ..   +.++.++|++. +|++|+.||.|++||+++++ ++..+.+ |...|.++.|. ++ .+|++++.||.|++|++..
T Consensus       291 ~~---v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~-~~l~s~~~d~~v~iw~~~~  365 (420)
T 3vl1_A          291 CS---CNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA-AG-ALFVSSGFDTSIKLDIISD  365 (420)
T ss_dssp             SC---EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE-TT-EEEEEETTTEEEEEEEECC
T ss_pred             CC---ceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeC-CC-CEEEEecCCccEEEEeccC
Confidence            44   66667799998 99999999999999999875 4777776 67788888665 56 6999999999999999876


Q ss_pred             C
Q 042434          514 S  514 (517)
Q Consensus       514 ~  514 (517)
                      +
T Consensus       366 ~  366 (420)
T 3vl1_A          366 P  366 (420)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.3e-35  Score=291.32  Aligned_cols=277  Identities=21%  Similarity=0.293  Sum_probs=232.8

Q ss_pred             EEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEE
Q 042434          215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLW  294 (517)
Q Consensus       215 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw  294 (517)
                      +....+|...|+|++|  ++++|++|+.||.|++||..++   .....+.+|...|.+++|  ++++|++|+.||+|++|
T Consensus       126 ~~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vw  198 (435)
T 1p22_A          126 IHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTL---ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVW  198 (435)
T ss_dssp             EECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSC---CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEE
T ss_pred             EecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCC---eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEE
Confidence            3344568889999887  7899999999999999999765   456778899999999999  78899999999999999


Q ss_pred             ECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCee---EeeeCcCCCceEEEEEccCCCEEEEE
Q 042434          295 DVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEI---KAWRGTRIPKVLDLAVTPDGENLISV  371 (517)
Q Consensus       295 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~  371 (517)
                      |+.+++.+..+..|...|.+++|+  +..+++|+.||.  |.+||......   ......+...|.++++  ++++++++
T Consensus       199 d~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~--i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~  272 (435)
T 1p22_A          199 DVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRS--IAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSA  272 (435)
T ss_dssp             ESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSC--EEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEE
T ss_pred             ECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCc--EEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEE
Confidence            999999999999999999999997  459999999999  77778764332   2344455568999988  78899999


Q ss_pred             eCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCC
Q 042434          372 LSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGL  449 (517)
Q Consensus       372 ~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~  449 (517)
                      +.||.|++||++++.  .....+...+.++.+  +++.+++++.||.|++||++++ .....+.+|...   +.++.+  
T Consensus       273 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~h~~~---v~~~~~--  344 (435)
T 1p22_A          273 SGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG-ACLRVLEGHEEL---VRCIRF--  344 (435)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTC-CEEEEECCCSSC---EEEEEC--
T ss_pred             eCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCC-CEEEEEeCCcCc---EEEEEe--
Confidence            999999999999877  445567788998888  5689999999999999999887 677778887766   444443  


Q ss_pred             CCcEEEEecCCCcEEEEecCCCc---------eeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434          450 DGTFIASGSENSQIYIWNRRNSK---------PIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS  515 (517)
Q Consensus       450 ~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~  515 (517)
                      ++.++++|+.||.|++||+.++.         ++..+.+|.+.|++++|  ++ ..|++++.||.|++||+.++.
T Consensus       345 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~-~~l~s~s~Dg~i~iwd~~~~~  416 (435)
T 1p22_A          345 DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DE-FQIVSSSHDDTILIWDFLNDP  416 (435)
T ss_dssp             CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CS-SCEEECCSSSEEEEEC-----
T ss_pred             cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CC-CEEEEEeCCCEEEEEECCCCC
Confidence            78999999999999999997766         78899999999999999  55 579999999999999998764

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-37  Score=306.00  Aligned_cols=291  Identities=11%  Similarity=0.088  Sum_probs=218.3

Q ss_pred             EEeccccCcEEEEEECCC------CCEEEEeeCCCcEEEEEecCCCee--------eEEEEeccCCCCEEEEEECCCCCe
Q 042434          216 QILTEHKNEVWFVQFSNN------GEYLASSSSDCSAIIWKVLEDSKL--------TLKHTLRSHQNPVSFVAWSPDDTK  281 (517)
Q Consensus       216 ~~l~~h~~~v~~~~~s~~------~~~l~t~~~dg~i~iw~~~~~~~~--------~~~~~~~~h~~~v~~l~~s~~~~~  281 (517)
                      ..+.+|.+.|++++|+|+      +.+||+|+.||+|+|||+..+...        .+..++.+|...|++++|++++ .
T Consensus       201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~  279 (524)
T 2j04_B          201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-T  279 (524)
T ss_dssp             EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-E
T ss_pred             EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-e
Confidence            457788999999999997      579999999999999999755321        1224678899999999999864 8


Q ss_pred             EEEEeCCCeEEEEECCCCc-EEEEeCCCCCceEEE--EEeCCC-CeEEEeeCCCceeEEEEeCCCCe-eEeeeCcCC-Cc
Q 042434          282 LLTCGNAEVLKLWDVETGI-CKHTFGDHGFIVSSC--AWFPDS-KRLVCGSSDTEKGIFMCDCDGNE-IKAWRGTRI-PK  355 (517)
Q Consensus       282 l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~i--~~~~~~-~~l~~~~~d~~v~i~~~~~~~~~-~~~~~~~~~-~~  355 (517)
                      |++|+.||+|++||+.++. +...+..|...|.++  +|+|++ .+|++|+.|++  |.+||.+... ...+..+.. ..
T Consensus       280 lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~t--vklWD~~~~~~~~~~~~~~~~~~  357 (524)
T 2j04_B          280 VVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGY--FYIFNPKDIATTKTTVSRFRGSN  357 (524)
T ss_dssp             EEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSE--EEEECGGGHHHHCEEEEECSCCS
T ss_pred             EEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCe--EEEEECCCCCcccccccccccCc
Confidence            9999999999999998774 445678999999999  568887 89999999999  8888886532 223333222 24


Q ss_pred             eEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEe
Q 042434          356 VLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYT  433 (517)
Q Consensus       356 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~  433 (517)
                      +.+++|+|+++.+++++.|++|++||+++..  .....|...|.+++|+|+++.+++|+.|++|++||+...  ......
T Consensus       358 v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~--~~~~~~  435 (524)
T 2j04_B          358 LVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR--LLHGIK  435 (524)
T ss_dssp             CCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS--TTTCC-
T ss_pred             ccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh--hccccc
Confidence            7889999999999999999999999998876  456678999999999999999999999999999998653  111111


Q ss_pred             Cc--ccCceEEEeecCCCCCcEEEEecCCCcEEEEecC-CCceeEEecCCCCCeeEEEecCCCC--cEEEEeeCCCcEEE
Q 042434          434 GH--SQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRR-NSKPIEILSGHSMTVNCVSWNPKRP--KMLASASDDHTIRI  508 (517)
Q Consensus       434 ~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~h~~~v~~v~~~~~~~--~~l~s~~~dg~v~i  508 (517)
                      ..  ......+..+.++|+|..+. ...+  ..+|+.. ++.++.++.+|...|++|+|+|+++  ..+|+|+.||.|+|
T Consensus       436 ~~~~~~~~~~v~~v~~sp~g~~~~-~~~~--~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrl  512 (524)
T 2j04_B          436 NSSATQKSLRLWKWDYSIKDDKYR-IDSS--YEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTL  512 (524)
T ss_dssp             -----CCCCEEEECBCCSSSCEEE-ECCC--CCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEE
T ss_pred             cCccceeeeEEEEeccCCCCCeEE-ccCC--ceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEE
Confidence            11  01112344566799998553 2222  3344433 5778888999999999999999962  48999999999999


Q ss_pred             eCCCCC
Q 042434          509 WGPCQS  514 (517)
Q Consensus       509 w~~~~~  514 (517)
                      |++...
T Consensus       513 w~l~~~  518 (524)
T 2j04_B          513 EYLSLE  518 (524)
T ss_dssp             EECSCC
T ss_pred             EEcccc
Confidence            998753

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.6e-35  Score=304.04  Aligned_cols=316  Identities=18%  Similarity=0.272  Sum_probs=250.5

Q ss_pred             hccccccCCCCCc--ccccc-CCCcccccCCCcccEEEeccccC---cEEEEEECCC-CCEEEEeeCCCcEEEEEecCCC
Q 042434          183 SQIDSCQYHNSSV--AISLY-EDHCCGRDQIPTETVQILTEHKN---EVWFVQFSNN-GEYLASSSSDCSAIIWKVLEDS  255 (517)
Q Consensus       183 ~q~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~l~~h~~---~v~~~~~s~~-~~~l~t~~~dg~i~iw~~~~~~  255 (517)
                      ..+..+.|++...  .+... +.....|+..+.+.+..+.+|.+   .|++++|+|+ +++|++|+.||.|++||+.++ 
T Consensus       161 ~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-  239 (615)
T 1pgu_A          161 QRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG-  239 (615)
T ss_dssp             SCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC-
T ss_pred             ccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCC-
Confidence            3455566666542  33333 34455677677788999999999   9999999999 999999999999999999766 


Q ss_pred             eeeEEEEe-c---cCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCC----CCceEEEEEeCCCCeEEEe
Q 042434          256 KLTLKHTL-R---SHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDH----GFIVSSCAWFPDSKRLVCG  327 (517)
Q Consensus       256 ~~~~~~~~-~---~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~i~~~~~~~~l~~~  327 (517)
                        .....+ .   .|...|.+++|+ ++.+|++++.||.|++||+.+++.+..+..+    ...+.++.|. ++.+++++
T Consensus       240 --~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~  315 (615)
T 1pgu_A          240 --EFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISL  315 (615)
T ss_dssp             --CEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEE
T ss_pred             --CEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEE
Confidence              344566 5   899999999999 9999999999999999999999999888766    4678888886 89999999


Q ss_pred             eCCCceeEEEEeCCCCee-EeeeCc--------------------------------CCCce------------------
Q 042434          328 SSDTEKGIFMCDCDGNEI-KAWRGT--------------------------------RIPKV------------------  356 (517)
Q Consensus       328 ~~d~~v~i~~~~~~~~~~-~~~~~~--------------------------------~~~~i------------------  356 (517)
                      +.|+.  +.+|+...... ..+..+                                +...|                  
T Consensus       316 ~~~g~--i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~  393 (615)
T 1pgu_A          316 SLDGT--LNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDD  393 (615)
T ss_dssp             ETTSC--EEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTT
T ss_pred             ECCCC--EEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCC
Confidence            99999  77777663222 111111                                11122                  


Q ss_pred             --------------------------------------------------------EEEEEccCCCEEEEEeC-CCcEEE
Q 042434          357 --------------------------------------------------------LDLAVTPDGENLISVLS-DKDIRI  379 (517)
Q Consensus       357 --------------------------------------------------------~~~~~~~~~~~l~~~~~-dg~i~i  379 (517)
                                                                              .+++++  ++++++++. |+.|++
T Consensus       394 ~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~d~~i~~  471 (615)
T 1pgu_A          394 TLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLEEGNTIQV  471 (615)
T ss_dssp             EEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSEEEEEETTTSCEEE
T ss_pred             CEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc--CCEEEEeecCCCeEEE
Confidence                                                                    222332  556666666 777777


Q ss_pred             EECCCceE---EeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeC-cccCceEEEeecCCC------
Q 042434          380 LNLGTYAE---RVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTG-HSQNKYVIRSCFGGL------  449 (517)
Q Consensus       380 ~d~~~~~~---~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~~~~~i~~~~~s~------  449 (517)
                      ||+.+...   ....+...+.+++|+|+++++++++.|+.|++||+.+. .....+.+ |...   +..+.|+|      
T Consensus       472 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~h~~~---v~~~~~sp~~~~~~  547 (615)
T 1pgu_A          472 FKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR-EVKTSRWAFRTSK---INAISWKPAEKGAN  547 (615)
T ss_dssp             EETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEECCSCCCSSC---EEEEEECCCC----
T ss_pred             EECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCC-cceeEeecCCCCc---eeEEEEcCcccccc
Confidence            77776552   23346778999999999999999999999999999876 55555555 6554   66677799      


Q ss_pred             ----CCcEEEEecCCCcEEEEecCCC-ceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434          450 ----DGTFIASGSENSQIYIWNRRNS-KPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ  513 (517)
Q Consensus       450 ----~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~  513 (517)
                          ++++|++|+.||.|++||+.++ +++..+.+|...|++++|+|++ . |++++.||.|++|++..
T Consensus       548 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~-l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          548 EEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-T-LVSSGADACIKRWNVVL  614 (615)
T ss_dssp             --CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-E-EEEEETTSCEEEEEEC-
T ss_pred             ccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCC-C-eEEecCCceEEEEeeec
Confidence                9999999999999999999998 7899999999999999999999 6 99999999999999875

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.9e-35  Score=276.82  Aligned_cols=252  Identities=20%  Similarity=0.339  Sum_probs=215.2

Q ss_pred             eeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEE
Q 042434          257 LTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIF  336 (517)
Q Consensus       257 ~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~  336 (517)
                      .....++.+|...|++++|+|++++|++++.||.|++|++.+++....+..|...|.+++|+|++++|++++.|+.  |.
T Consensus        13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~--i~   90 (312)
T 4ery_A           13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKT--LK   90 (312)
T ss_dssp             CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSE--EE
T ss_pred             ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCE--EE
Confidence            4566788999999999999999999999999999999999999999999999999999999999999999999999  88


Q ss_pred             EEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCC
Q 042434          337 MCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNS  414 (517)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d  414 (517)
                      +||............+...|.+++|+|+++++++++.|+.|++||+++.+  .....+..++.+++|+|+++++++++.|
T Consensus        91 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  170 (312)
T 4ery_A           91 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD  170 (312)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCC
Confidence            88887554433333445689999999999999999999999999999877  4445677899999999999999999999


Q ss_pred             CeEEEEEcCCCCccceEEe-CcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeE--EEec-
Q 042434          415 QEIHMWDVAGKWEKPFKYT-GHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNC--VSWN-  490 (517)
Q Consensus       415 ~~i~~~d~~~~~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~--v~~~-  490 (517)
                      +.|++||+++. .....+. .+..   .+..+.++|+++++++++.||.|++||+.+++++..+.+|...+..  ..++ 
T Consensus       171 ~~i~~wd~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (312)
T 4ery_A          171 GLCRIWDTASG-QCLKTLIDDDNP---PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV  246 (312)
T ss_dssp             SCEEEEETTTC-CEEEEECCSSCC---CEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEEC
T ss_pred             CcEEEEECCCC-ceeeEEeccCCC---ceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEe
Confidence            99999999876 3333332 2222   3556677999999999999999999999999999999988765433  3454 


Q ss_pred             CCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434          491 PKRPKMLASASDDHTIRIWGPCQSS  515 (517)
Q Consensus       491 ~~~~~~l~s~~~dg~v~iw~~~~~~  515 (517)
                      +++ .++++|+.||.|++||+.+++
T Consensus       247 ~~~-~~l~sg~~dg~i~vwd~~~~~  270 (312)
T 4ery_A          247 TGG-KWIVSGSEDNLVYIWNLQTKE  270 (312)
T ss_dssp             SSS-CEEEECCTTSCEEEEETTTCC
T ss_pred             CCC-cEEEEECCCCEEEEEECCCch
Confidence            455 799999999999999998765

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.1e-36  Score=315.98  Aligned_cols=195  Identities=14%  Similarity=0.147  Sum_probs=152.4

Q ss_pred             hccccccCCCCCc--cccccCCCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEE
Q 042434          183 SQIDSCQYHNSSV--AISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLK  260 (517)
Q Consensus       183 ~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~  260 (517)
                      ..+.++.|++...  +.+..++.+..|+....+.... ..|...|++++|+| |++|++++.|++|+|||+.++..   .
T Consensus        18 ~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~-~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~---~   92 (902)
T 2oaj_A           18 SKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIK-LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKV---L   92 (902)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEE-CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSE---E
T ss_pred             CCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEE-cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcE---E
Confidence            3456667777655  3333344445555444444333 45889999999999 88999999999999999987643   3


Q ss_pred             EEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEE-----------EEeCCCCCceEEEEEeCC-CCeEEEee
Q 042434          261 HTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICK-----------HTFGDHGFIVSSCAWFPD-SKRLVCGS  328 (517)
Q Consensus       261 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-----------~~~~~~~~~v~~i~~~~~-~~~l~~~~  328 (517)
                      ..+. |.+.|++++|+|++++|++|+.||+|++||+.++++.           ..+.+|..+|.+++|+|+ +..+++|+
T Consensus        93 ~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~  171 (902)
T 2oaj_A           93 TTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISY  171 (902)
T ss_dssp             EEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEEC
T ss_pred             EEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEe
Confidence            4443 7789999999999999999999999999999988764           233578899999999996 57899999


Q ss_pred             CCCceeEEEEeCCCCee-EeeeCc-----------------CCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce
Q 042434          329 SDTEKGIFMCDCDGNEI-KAWRGT-----------------RIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA  386 (517)
Q Consensus       329 ~d~~v~i~~~~~~~~~~-~~~~~~-----------------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  386 (517)
                      .||.  + +||...... ..+..+                 +...|.+++|+|+|++|++++.||.|++||+++++
T Consensus       172 ~dg~--v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~  244 (902)
T 2oaj_A          172 EYVT--L-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGH  244 (902)
T ss_dssp             SSCE--E-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCC
T ss_pred             CCCc--E-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence            9998  7 899886544 333322                 23579999999999999999999999999997654

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-35  Score=280.60  Aligned_cols=279  Identities=17%  Similarity=0.218  Sum_probs=204.1

Q ss_pred             cccccCCCCCccccccCCCcccccCCCc---ccEEEe-cc-ccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCC----
Q 042434          185 IDSCQYHNSSVAISLYEDHCCGRDQIPT---ETVQIL-TE-HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDS----  255 (517)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l-~~-h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~----  255 (517)
                      +..+.+.+. ..++...|.....+....   .....+ .+ |.+.|++++|+|++++|++|+.|++|+||+.....    
T Consensus        17 v~~~~~s~~-~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~   95 (330)
T 2hes_X           17 IWSFDFSQG-ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTF   95 (330)
T ss_dssp             EEEEEEETT-EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------C
T ss_pred             eeeeccCCC-EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccc
Confidence            344445544 333444444444333332   345555 45 99999999999999999999999999999985321    


Q ss_pred             eeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCC----CcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCC
Q 042434          256 KLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVET----GICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDT  331 (517)
Q Consensus       256 ~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~  331 (517)
                      .......+.+|...|.+++|+|++++|++|+.|++|++||+..    .+++..+..|...|.+++|+|++.+|++++.|+
T Consensus        96 ~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~  175 (330)
T 2hes_X           96 EMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDD  175 (330)
T ss_dssp             CCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred             cceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCC
Confidence            2356678899999999999999999999999999999999943    256778889999999999999999999999999


Q ss_pred             ceeEEEEeCCCC---eeEeeeCcCCCceEEEEEccC--CCEEEEEeCCCcEEEEECCCc--------e-EE-ee-ccCCC
Q 042434          332 EKGIFMCDCDGN---EIKAWRGTRIPKVLDLAVTPD--GENLISVLSDKDIRILNLGTY--------A-ER-VI-SEEHP  395 (517)
Q Consensus       332 ~v~i~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~--------~-~~-~~-~~~~~  395 (517)
                      .  |.+|+....   .+..+. .|...|.+++|+|+  +..+++++.|++|++||+...        . .. .. .|...
T Consensus       176 ~--i~iW~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~  252 (330)
T 2hes_X          176 T--VRIWKDYDDDWECVAVLN-GHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQ  252 (330)
T ss_dssp             C--EEEEEEETTEEEEEEEEC-CCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSC
T ss_pred             e--EEEEECCCCCeeEEEEcc-CCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccc
Confidence            9  566665432   334444 45568999999998  678999999999999998654        1 11 11 26788


Q ss_pred             eeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc-cc-eEEeCcccCceEEEeecCCC--CCcEEEEecCCCcEEEEecCC
Q 042434          396 ITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWE-KP-FKYTGHSQNKYVIRSCFGGL--DGTFIASGSENSQIYIWNRRN  470 (517)
Q Consensus       396 i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~-~~-~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~~dg~i~iwd~~~  470 (517)
                      |.+++|++++ .+++++.||.|++||..++.. .. ....+|..  ..+.++.|+|  ++++|++|+.||.|++||+.+
T Consensus       253 v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~--~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          253 VYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGV--YEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTT--SCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             eEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecccccccc--ceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            9999999765 899999999999999876421 11 12234443  1355666677  789999999999999999864

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.6e-35  Score=280.99  Aligned_cols=265  Identities=20%  Similarity=0.248  Sum_probs=211.2

Q ss_pred             cccccCCCcc-cccCCC-------cccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCC
Q 042434          196 AISLYEDHCC-GRDQIP-------TETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQ  267 (517)
Q Consensus       196 ~~~~~~~~~~-~~~~~~-------~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~  267 (517)
                      .++...|... .|+...       ..+...+.+|...|++++|+|++.++++|+.|++|++||+.++   .....+.+|.
T Consensus        42 l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~---~~~~~~~~h~  118 (343)
T 2xzm_R           42 LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTG---TTYKRFVGHQ  118 (343)
T ss_dssp             EEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSS---CEEEEEECCC
T ss_pred             EEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC---cEEEEEcCCC
Confidence            4455555544 444322       3457789999999999999999999999999999999999766   4557788999


Q ss_pred             CCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeC---CCCCceEEEEEeCCC----------CeEEEeeCCCcee
Q 042434          268 NPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFG---DHGFIVSSCAWFPDS----------KRLVCGSSDTEKG  334 (517)
Q Consensus       268 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~i~~~~~~----------~~l~~~~~d~~v~  334 (517)
                      ..|.+++|+|++++|++++.|++|++||+.. .......   .|...|.+++|+|++          .++++++.|+.  
T Consensus       119 ~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~--  195 (343)
T 2xzm_R          119 SEVYSVAFSPDNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGR--  195 (343)
T ss_dssp             SCEEEEEECSSTTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSE--
T ss_pred             CcEEEEEECCCCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCE--
Confidence            9999999999999999999999999999974 4444433   688899999999987          78999999999  


Q ss_pred             EEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEe
Q 042434          335 IFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNL  412 (517)
Q Consensus       335 i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~  412 (517)
                      |.+||........+..+ ...|.+++|+|++++|++++.||.|++||+....  .....+...+.+++|+|++.+++++ 
T Consensus       196 i~iwd~~~~~~~~~~~h-~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~-  273 (343)
T 2xzm_R          196 LKVWNTNFQIRYTFKAH-ESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVG-  273 (343)
T ss_dssp             EEEEETTTEEEEEEECC-SSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEE-
T ss_pred             EEEEcCCCceeEEEcCc-cccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEE-
Confidence            77788666555555544 4689999999999999999999999999995433  3334456789999999999877654 


Q ss_pred             CCCeEEEEEcCCCCccc-eEEe-----------CcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCC
Q 042434          413 NSQEIHMWDVAGKWEKP-FKYT-----------GHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS  471 (517)
Q Consensus       413 ~d~~i~~~d~~~~~~~~-~~~~-----------~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  471 (517)
                      .|+.|++||+.+..... ..+.           +|..   .+.++.|+|+|++|++|+.||.|++|++.++
T Consensus       274 ~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          274 TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNP---QCTSLAWNALGKKLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCC---CEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred             CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCC---ceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence            57889999997652221 1222           2322   3667778999999999999999999998765

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=2.8e-36  Score=282.53  Aligned_cols=248  Identities=20%  Similarity=0.300  Sum_probs=198.2

Q ss_pred             EEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECC--CCCeEEEEeCCCeEEE
Q 042434          216 QILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP--DDTKLLTCGNAEVLKL  293 (517)
Q Consensus       216 ~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~--~~~~l~s~~~dg~i~i  293 (517)
                      ..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++. ......+.+|.+.|.+++|+|  ++++|++|+.|++|++
T Consensus         7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~-~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i   85 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGG-QILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII   85 (316)
T ss_dssp             -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTE-EEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred             eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCC-cEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence            3567899999999999999999999999999999997553 235677899999999999986  4899999999999999


Q ss_pred             EECCCC--cEEEEeCCCCCceEEEEEeCC--CCeEEEeeCCCceeEEEEeCCCCe---eEeeeCcCCCceEEEEEccC--
Q 042434          294 WDVETG--ICKHTFGDHGFIVSSCAWFPD--SKRLVCGSSDTEKGIFMCDCDGNE---IKAWRGTRIPKVLDLAVTPD--  364 (517)
Q Consensus       294 wd~~~~--~~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~d~~v~i~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~--  364 (517)
                      ||++++  .....+.+|...|.+++|+|+  +.+|++|+.|+.  |.+|+..+..   .......+...+.+++|+|+  
T Consensus        86 Wd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~--i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  163 (316)
T 3bg1_A           86 WREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGA--ISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVV  163 (316)
T ss_dssp             ECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSC--EEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCC
T ss_pred             EECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCC--EEEEecCCCCCcceeeeeccccCCcceEEEccccC
Confidence            999887  466778899999999999998  789999999999  6666655431   12233345567899999997  


Q ss_pred             ---------------CCEEEEEeCCCcEEEEECCCc---e--EEeeccCCCeeEEEEcCCC----CEEEEEeCCCeEEEE
Q 042434          365 ---------------GENLISVLSDKDIRILNLGTY---A--ERVISEEHPITSLSVSVDC----KNFIVNLNSQEIHMW  420 (517)
Q Consensus       365 ---------------~~~l~~~~~dg~i~i~d~~~~---~--~~~~~~~~~i~~~~~s~~~----~~l~~~~~d~~i~~~  420 (517)
                                     ++++++++.|+.|++||++..   .  .....|...|.+++|+|++    ..|++++.|+.|++|
T Consensus       164 ~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw  243 (316)
T 3bg1_A          164 PGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIW  243 (316)
T ss_dssp             C------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEE
T ss_pred             CccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEE
Confidence                           468999999999999999754   1  3345678899999999986    889999999999999


Q ss_pred             EcCCCC---ccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecC
Q 042434          421 DVAGKW---EKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRR  469 (517)
Q Consensus       421 d~~~~~---~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~  469 (517)
                      |+....   .....+..|...   +..+.|+|++++|++++.||.|++|+..
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~---v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          244 TCDDASSNTWSPKLLHKFNDV---VWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             ECSSTTCCCCBCCEEEECSSC---EEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             EccCccccchhhhhhhcCCCc---EEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            987521   122334445443   5566779999999999999999999975

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=5.8e-35  Score=289.37  Aligned_cols=297  Identities=18%  Similarity=0.245  Sum_probs=244.6

Q ss_pred             cccccCCCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEE
Q 042434          196 AISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAW  275 (517)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~  275 (517)
                      ..+..++....|+....+.+..+.+|.+.|++++|+|++ +|++|+.||+|++||+.++   .....+.+|...|.+++|
T Consensus       136 ~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~---~~~~~~~~h~~~v~~l~~  211 (464)
T 3v7d_B          136 ITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKG---CCTHVFEGHNSTVRCLDI  211 (464)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEE
T ss_pred             EEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCC---cEEEEECCCCCccEEEEE
Confidence            334444556677777888999999999999999999988 9999999999999999766   456788899999999999


Q ss_pred             C--CCCCeEEEEeCCCeEEEEECCCCcE-----------------------EEEeCCCCCceEEEEEeCCCCeEEEeeCC
Q 042434          276 S--PDDTKLLTCGNAEVLKLWDVETGIC-----------------------KHTFGDHGFIVSSCAWFPDSKRLVCGSSD  330 (517)
Q Consensus       276 s--~~~~~l~s~~~dg~i~iwd~~~~~~-----------------------~~~~~~~~~~v~~i~~~~~~~~l~~~~~d  330 (517)
                      +  +++.++++|+.||+|++||+.++..                       ...+.+|...|.++  +++++++++++.|
T Consensus       212 ~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d  289 (464)
T 3v7d_B          212 VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYD  289 (464)
T ss_dssp             EESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETT
T ss_pred             ecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCC
Confidence            8  5789999999999999999987652                       55677888888887  5678999999999


Q ss_pred             CceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEE
Q 042434          331 TEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNF  408 (517)
Q Consensus       331 ~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l  408 (517)
                      +.  |.+||............+...|.+++|+|+++.+++++.||.|++||+++++  .....+...+.+++++  ++++
T Consensus       290 ~~--i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l  365 (464)
T 3v7d_B          290 NT--LIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFL  365 (464)
T ss_dssp             SC--EEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEE
T ss_pred             Ce--EEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEE
Confidence            99  8889988655544444555789999999999999999999999999999887  4455688889999997  5799


Q ss_pred             EEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEE-ecCCCCCeeEE
Q 042434          409 IVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEI-LSGHSMTVNCV  487 (517)
Q Consensus       409 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~v  487 (517)
                      ++++.||.|++||+.+. ....... +...   +..+.++++++++++|+ ||.|++||+.+++++.. +.+|.+.|.++
T Consensus       366 ~s~s~dg~v~vwd~~~~-~~~~~~~-~~~~---~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v  439 (464)
T 3v7d_B          366 VSAAADGSIRGWDANDY-SRKFSYH-HTNL---SAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSV  439 (464)
T ss_dssp             EEEETTSEEEEEETTTC-CEEEEEE-CTTC---CCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEE
T ss_pred             EEEeCCCcEEEEECCCC-ceeeeec-CCCC---ccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEE
Confidence            99999999999999876 3332222 2222   23344578999999998 89999999999999886 66789999999


Q ss_pred             EecCCCCcEEEEeeCCCcEEEeC
Q 042434          488 SWNPKRPKMLASASDDHTIRIWG  510 (517)
Q Consensus       488 ~~~~~~~~~l~s~~~dg~v~iw~  510 (517)
                      +|++ + .++++++.||.+.+|-
T Consensus       440 ~~~~-~-~l~~~~~~~g~~~i~~  460 (464)
T 3v7d_B          440 NFKG-K-TLVAAVEKDGQSFLEI  460 (464)
T ss_dssp             EEET-T-EEEEEEEETTEEEEEE
T ss_pred             EecC-C-EEEEEEEeCCeEEEEE
Confidence            9983 3 5778888888766553

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=9.8e-37  Score=293.41  Aligned_cols=285  Identities=20%  Similarity=0.312  Sum_probs=231.5

Q ss_pred             HHhccccccCCCCCc-cccccCCC-cccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCC---
Q 042434          181 VTSQIDSCQYHNSSV-AISLYEDH-CCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDS---  255 (517)
Q Consensus       181 ~~~q~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~---  255 (517)
                      +...+.++.|++... .++...|. ...|+....+....+.+|...|.+++|+|+|++|++|+.|+.+++|++.+..   
T Consensus        65 H~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~  144 (380)
T 3iz6_a           65 HSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRD  144 (380)
T ss_dssp             CSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCC
T ss_pred             cccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCcccc
Confidence            345566777777655 44555554 5567777788899999999999999999999999999999999999986431   


Q ss_pred             -eeeEEEEeccCCCCEEEEEECCCC-CeEEEEeCCCeEEEEECCCCcEEEEe-----CCCCCceEEEEEeC-CCCeEEEe
Q 042434          256 -KLTLKHTLRSHQNPVSFVAWSPDD-TKLLTCGNAEVLKLWDVETGICKHTF-----GDHGFIVSSCAWFP-DSKRLVCG  327 (517)
Q Consensus       256 -~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~i~~~~-~~~~l~~~  327 (517)
                       .......+.+|.+.|.++.|+|++ ..|++|+.|++|++||+.+++.+..+     .+|...|.+++|++ ++.+|++|
T Consensus       145 ~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg  224 (380)
T 3iz6_a          145 GNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISG  224 (380)
T ss_dssp             CSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEE
T ss_pred             CCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEE
Confidence             122335678999999999999974 67999999999999999999998877     57899999999987 88999999


Q ss_pred             eCCCceeEEEEeCC--CCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceEE-eec-c-------CCCe
Q 042434          328 SSDTEKGIFMCDCD--GNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAER-VIS-E-------EHPI  396 (517)
Q Consensus       328 ~~d~~v~i~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~-~-------~~~i  396 (517)
                      +.|+.  |.+||.+  +..+..+.. |.+.|.+++|+|+++++++++.||+|++||++++... ... +       ...+
T Consensus       225 s~D~~--v~~wd~~~~~~~~~~~~~-h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v  301 (380)
T 3iz6_a          225 SCDTT--VRLWDLRITSRAVRTYHG-HEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIV  301 (380)
T ss_dssp             ETTSC--EEEEETTTTCCCCEEECC-CSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSC
T ss_pred             ECCCe--EEEEECCCCCcceEEECC-cCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCce
Confidence            99999  7788876  344444444 4468999999999999999999999999999987722 221 1       1248


Q ss_pred             eEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEE----eCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCc
Q 042434          397 TSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKY----TGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSK  472 (517)
Q Consensus       397 ~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  472 (517)
                      .+++|+|+|+++++++.||.|++||+... .....+    .+|...   +.++.++|+|.+|++|+.||+|++|++...+
T Consensus       302 ~~~~~s~~g~~l~~g~~dg~i~vwd~~~~-~~~~~~~~~~~~h~~~---v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          302 TSVAFSISGRLLFAGYSNGDCYVWDTLLA-EMVLNLGTLQNSHEGR---ISCLGLSSDGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             SEEEECSSSSEEEEECTTSCEEEEETTTC-CEEEEECCSCSSCCCC---CCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred             EEEEECCCCCEEEEEECCCCEEEEECCCC-ceEEEEecccCCCCCc---eEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence            99999999999999999999999999766 344443    355554   5666779999999999999999999987654

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=6.6e-36  Score=284.73  Aligned_cols=284  Identities=13%  Similarity=0.141  Sum_probs=217.5

Q ss_pred             HHhccccccCCCCCc-cccccCCCcccc-------cCCCc----ccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEE
Q 042434          181 VTSQIDSCQYHNSSV-AISLYEDHCCGR-------DQIPT----ETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAII  248 (517)
Q Consensus       181 ~~~q~~~~~~~~~~~-~~~~~~~~~~~~-------~~~~~----~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~i  248 (517)
                      ++.++.++.|.++.. .++...+....|       +....    .......+|.+.|++++|+|++.+ ++++.||+|+|
T Consensus        41 H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~-l~~s~dg~v~l  119 (357)
T 4g56_B           41 MEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGI-LVASDSGAVEL  119 (357)
T ss_dssp             CCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEE-EEEETTSCEEE
T ss_pred             ccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCE-EEEECCCEEEE
Confidence            456778888888776 444444433222       22221    233445679999999999999865 56778999999


Q ss_pred             EEecCCCeee-EEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCC-eEEE
Q 042434          249 WKVLEDSKLT-LKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSK-RLVC  326 (517)
Q Consensus       249 w~~~~~~~~~-~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~  326 (517)
                      ||+.++.... ......+|...|++++|+|++++|++|+.||+|++||+.+++++..+..|...|.+++|+|++. .+++
T Consensus       120 Wd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s  199 (357)
T 4g56_B          120 WEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLS  199 (357)
T ss_dssp             C--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEE
T ss_pred             eeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeee
Confidence            9997654321 1234568999999999999999999999999999999999999999999999999999999875 7899


Q ss_pred             eeCCCceeEEEEeCCCCee-Eeee-CcCCCceEEEEEccCC-CEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEE
Q 042434          327 GSSDTEKGIFMCDCDGNEI-KAWR-GTRIPKVLDLAVTPDG-ENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSV  401 (517)
Q Consensus       327 ~~~d~~v~i~~~~~~~~~~-~~~~-~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~  401 (517)
                      ++.|+.  |.+||...... .... ..+...+.+++|+|++ .++++|+.|+.|++||+++.+  .....+...|.+++|
T Consensus       200 ~~~dg~--v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~  277 (357)
T 4g56_B          200 CGEDGR--ILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAY  277 (357)
T ss_dssp             EETTSC--EEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEE
T ss_pred             eccCCc--eEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEE
Confidence            999999  88888875433 2222 2344579999999974 688899999999999999877  555678889999999


Q ss_pred             cCCC-CEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCC-CCcEEEEecCCCcEEEEecCCCc
Q 042434          402 SVDC-KNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGL-DGTFIASGSENSQIYIWNRRNSK  472 (517)
Q Consensus       402 s~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~  472 (517)
                      +|++ ++|++++.|+.|++||++++ .. ....+|...   +.++.|+| ++.+|++++.||+|++||+.+..
T Consensus       278 sp~~~~~lasgs~D~~i~iwd~~~~-~~-~~~~~H~~~---V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~  345 (357)
T 4g56_B          278 SYHSSPFLASISEDCTVAVLDADFS-EV-FRDLSHRDF---VTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG  345 (357)
T ss_dssp             CSSSSCCEEEEETTSCEEEECTTSC-EE-EEECCCSSC---EEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred             cCCCCCEEEEEeCCCEEEEEECCCC-cE-eEECCCCCC---EEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence            9987 57889999999999999876 33 344467655   66677788 89999999999999999987543

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=7.3e-35  Score=286.90  Aligned_cols=280  Identities=23%  Similarity=0.378  Sum_probs=237.8

Q ss_pred             ccEEEeccccCcE-EEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeE
Q 042434          213 ETVQILTEHKNEV-WFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVL  291 (517)
Q Consensus       213 ~~~~~l~~h~~~v-~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i  291 (517)
                      +....+.+|.+.| .|  ++++|++|++|+.||.|++||+.++   .....+.+|.+.|.+++|+  ++.+++|+.||+|
T Consensus       109 ~~~~~l~~h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i  181 (445)
T 2ovr_B          109 KSPKVLKGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTG---KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTL  181 (445)
T ss_dssp             CCCEEEECSTTSCEEE--EEEETTEEEEEETTSCEEEEETTTC---CEEEECCCCSSCEEEEEEE--TTEEEEEETTSCE
T ss_pred             ceeEEecccCCCcEEE--EEEcCCEEEEEECCCcEEEEECCCC---cEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeE
Confidence            3456788999875 55  4457899999999999999999766   4567889999999999997  6699999999999


Q ss_pred             EEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEE
Q 042434          292 KLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISV  371 (517)
Q Consensus       292 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  371 (517)
                      ++||+.+++.+..+..|...|.++.|+  ++.+++|+.||.  +.+||............+...+.++.+  +++.++++
T Consensus       182 ~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~--i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~  255 (445)
T 2ovr_B          182 KVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDAT--LRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSG  255 (445)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSE--EEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEE
T ss_pred             EEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCE--EEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEE
Confidence            999999999999999999999999996  568999999999  888898754443333345568999988  78899999


Q ss_pred             eCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCC
Q 042434          372 LSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGL  449 (517)
Q Consensus       372 ~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~  449 (517)
                      +.||.|++||+++..  .....+...+.++.+  ++.++++++.|+.|++||++++ .....+.+|......   +  .+
T Consensus       256 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~v~~---~--~~  327 (445)
T 2ovr_B          256 AYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG-NCIHTLTGHQSLTSG---M--EL  327 (445)
T ss_dssp             ETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTC-CEEEEECCCCSCEEE---E--EE
T ss_pred             cCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCC-CEEEEEcCCcccEEE---E--EE
Confidence            999999999998877  344457788999998  8899999999999999999887 666777777665333   2  34


Q ss_pred             CCcEEEEecCCCcEEEEecCCCceeEEecC---CCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434          450 DGTFIASGSENSQIYIWNRRNSKPIEILSG---HSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSE  516 (517)
Q Consensus       450 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~  516 (517)
                      +++++++|+.||.|++||+.+++++..+.+   |...|++++|+  + .++++|+.||.|++||+.+++.
T Consensus       328 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~s~~~dg~v~iwd~~~~~~  394 (445)
T 2ovr_B          328 KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--K-NFVITSSDDGTVKLWDLKTGEF  394 (445)
T ss_dssp             ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--S-SEEEEEETTSEEEEEETTTCCE
T ss_pred             eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--C-CEEEEEeCCCeEEEEECCCCce
Confidence            678999999999999999999999999986   88999999996  3 5899999999999999998764

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-35  Score=314.64  Aligned_cols=320  Identities=13%  Similarity=0.200  Sum_probs=241.8

Q ss_pred             ccccccCCCCCccccccCCCcc-cccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEE--
Q 042434          184 QIDSCQYHNSSVAISLYEDHCC-GRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLK--  260 (517)
Q Consensus       184 q~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~--  260 (517)
                      .+..+.|.+....++...|... .|+....+++..+. |.+.|++++|+|++++|++|+.||.|++||+.++......  
T Consensus        60 ~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~  138 (902)
T 2oaj_A           60 AIKEMRFVKGIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLD  138 (902)
T ss_dssp             CEEEEEEETTTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEEC
T ss_pred             CEEEEEEcCCCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceec
Confidence            4566666663334555555544 55555667777775 7789999999999999999999999999999765321110  


Q ss_pred             ------EEeccCCCCEEEEEECCC-CCeEEEEeCCCeEEEEECCCCcEEEEeCCC------------------CCceEEE
Q 042434          261 ------HTLRSHQNPVSFVAWSPD-DTKLLTCGNAEVLKLWDVETGICKHTFGDH------------------GFIVSSC  315 (517)
Q Consensus       261 ------~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------------~~~v~~i  315 (517)
                            ..+.+|.++|.+++|+|+ +..+++|+.||.| +||+.+++++..+..|                  ...|.++
T Consensus       139 ~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v  217 (902)
T 2oaj_A          139 NLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQS  217 (902)
T ss_dssp             CHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEE
T ss_pred             cccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEE
Confidence                  234679999999999996 4789999999999 9999999998888655                  4779999


Q ss_pred             EEeCCCCeEEEeeCCCceeEEEEeCCC-CeeEe------------------------------e----------------
Q 042434          316 AWFPDSKRLVCGSSDTEKGIFMCDCDG-NEIKA------------------------------W----------------  348 (517)
Q Consensus       316 ~~~~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~------------------------------~----------------  348 (517)
                      +|+|+|.+|++++.||.  |.+||... ..+..                              |                
T Consensus       218 ~fspdg~~lasgs~Dg~--i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~  295 (902)
T 2oaj_A          218 LYHPNSLHIITIHEDNS--LVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHK  295 (902)
T ss_dssp             EECTTSSEEEEEETTCC--EEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEE
T ss_pred             EEcCCCCEEEEEECCCe--EEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCC
Confidence            99999999999999999  66666532 11100                              0                


Q ss_pred             -------------e-C----------------------------cCC---------------------------------
Q 042434          349 -------------R-G----------------------------TRI---------------------------------  353 (517)
Q Consensus       349 -------------~-~----------------------------~~~---------------------------------  353 (517)
                                   . .                            .+.                                 
T Consensus       296 ~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~  375 (902)
T 2oaj_A          296 SISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGE  375 (902)
T ss_dssp             CSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSC
T ss_pred             CCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCc
Confidence                         0 0                            000                                 


Q ss_pred             --------------------------CceEEE----------------------------------EEccCCCEEEEEeC
Q 042434          354 --------------------------PKVLDL----------------------------------AVTPDGENLISVLS  373 (517)
Q Consensus       354 --------------------------~~i~~~----------------------------------~~~~~~~~l~~~~~  373 (517)
                                                ..|+++                                  +|+|+++.+++|+.
T Consensus       376 l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~  455 (902)
T 2oaj_A          376 IETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHS  455 (902)
T ss_dssp             EEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEET
T ss_pred             EEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecC
Confidence                                      011111                                  22456778888999


Q ss_pred             CCcEEEEECCCceEE----e---------eccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC--------------
Q 042434          374 DKDIRILNLGTYAER----V---------ISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKW--------------  426 (517)
Q Consensus       374 dg~i~i~d~~~~~~~----~---------~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~--------------  426 (517)
                      |++|++||+.++...    .         ..|...|.+++|+|++++|++++.||+|++||+.+..              
T Consensus       456 DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~  535 (902)
T 2oaj_A          456 NGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLE  535 (902)
T ss_dssp             TSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC-------------
T ss_pred             CCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccc
Confidence            999999998765411    0         1566789999999999999999999999999996541              


Q ss_pred             ------------------------------ccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeE-
Q 042434          427 ------------------------------EKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIE-  475 (517)
Q Consensus       427 ------------------------------~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-  475 (517)
                                                    .....+.+|...   +.++.|+||| +||+|+.||+|++||++++..+. 
T Consensus       536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~---V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~  611 (902)
T 2oaj_A          536 MNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGK---TSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYM  611 (902)
T ss_dssp             --CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCS---EEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEE
T ss_pred             eeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCc---EEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEE
Confidence                                          113445566655   5666679999 99999999999999998877654 


Q ss_pred             ----Eec-CCCCCeeEEEec-----CCC--CcEEEEeeCCCcEEEeCC
Q 042434          476 ----ILS-GHSMTVNCVSWN-----PKR--PKMLASASDDHTIRIWGP  511 (517)
Q Consensus       476 ----~~~-~h~~~v~~v~~~-----~~~--~~~l~s~~~dg~v~iw~~  511 (517)
                          .+. +|.+.|++|+|+     |||  ..+|++|+.||+|++|++
T Consensus       612 ~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~  659 (902)
T 2oaj_A          612 ENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI  659 (902)
T ss_dssp             EEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred             eehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence                233 899999999999     885  269999999999999998

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=2.4e-34  Score=305.26  Aligned_cols=319  Identities=14%  Similarity=0.195  Sum_probs=259.6

Q ss_pred             hccccccCCCCCc--cccccCCCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEE
Q 042434          183 SQIDSCQYHNSSV--AISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLK  260 (517)
Q Consensus       183 ~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~  260 (517)
                      ..+..+.+++...  +++..++....|+......+..+.+|.+.|++++|+|++++|++|+.||.|++||+.++   ...
T Consensus        14 ~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~---~~~   90 (814)
T 3mkq_A           14 DRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG---EKV   90 (814)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC---CEE
T ss_pred             CceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCC---cEE
Confidence            3456667777665  33444455667776778889999999999999999999999999999999999999766   455


Q ss_pred             EEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCC-cEEEEeCCCCCceEEEEEeC-CCCeEEEeeCCCceeEEEE
Q 042434          261 HTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETG-ICKHTFGDHGFIVSSCAWFP-DSKRLVCGSSDTEKGIFMC  338 (517)
Q Consensus       261 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~d~~v~i~~~  338 (517)
                      ..+.+|.+.|++++|+|++++|++++.||.|++||+.++ .....+..|...|.+++|+| ++..+++++.||.  |.+|
T Consensus        91 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~--v~vw  168 (814)
T 3mkq_A           91 VDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT--VKVW  168 (814)
T ss_dssp             EEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSE--EEEE
T ss_pred             EEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCe--EEEE
Confidence            677889999999999999999999999999999999887 67778889999999999999 8899999999999  8888


Q ss_pred             eCCC-CeeEeeeCcCCCceEEEEEcc--CCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeC
Q 042434          339 DCDG-NEIKAWRGTRIPKVLDLAVTP--DGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLN  413 (517)
Q Consensus       339 ~~~~-~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~  413 (517)
                      +..+ ........++...+.+++|+|  ++.++++++.||.|++||+.++.  .....+...+.+++|+|++..+++++.
T Consensus       169 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  248 (814)
T 3mkq_A          169 SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE  248 (814)
T ss_dssp             ETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEET
T ss_pred             ECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeC
Confidence            8764 444555555556899999999  99999999999999999998877  444557889999999999999999999


Q ss_pred             CCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCc--EEEEecCCCcEEEEecCCCceeEE---------------
Q 042434          414 SQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGT--FIASGSENSQIYIWNRRNSKPIEI---------------  476 (517)
Q Consensus       414 d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~--~l~~~~~dg~i~iwd~~~~~~~~~---------------  476 (517)
                      ||.|++||+.+. .....+..+...   +.++.++|++.  ++++++ ++.+.+|++..+.....               
T Consensus       249 dg~v~vwd~~~~-~~~~~~~~~~~~---v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  323 (814)
T 3mkq_A          249 DGTLKIWNSSTY-KVEKTLNVGLER---SWCIATHPTGRKNYIASGF-DNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNA  323 (814)
T ss_dssp             TSCEEEEETTTC-SEEEEECCSSSS---EEEEEECTTCGGGEEEEEE-TTEEEEEECSCCSCCEEECSSSEEEEECCTTS
T ss_pred             CCeEEEEECCCC-cEEEEeecCCCc---EEEEEEccCCCceEEEEEe-CCCEEEEEcCCCCceeEECCCCCEEEECcccc
Confidence            999999999876 566666666554   55556688887  455555 66688888764322111               


Q ss_pred             ----------------------------ecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434          477 ----------------------------LSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ  513 (517)
Q Consensus       477 ----------------------------~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~  513 (517)
                                                  +..+...+.+++|+|+| .++++++ ||.+.+|++..
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~la~~~-~~~~~i~~~~~  386 (814)
T 3mkq_A          324 AASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNG-RFVTVVG-DGEYVIYTALA  386 (814)
T ss_dssp             CTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTS-SEEEEEE-TTEEEEEETTT
T ss_pred             cceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCC-CEEEEec-CCEEEEEECcc
Confidence                                        12345568899999999 6888887 89999998754

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=3.8e-35  Score=274.81  Aligned_cols=245  Identities=20%  Similarity=0.250  Sum_probs=198.4

Q ss_pred             EeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc--EEEEeCCCCCceEEEEEeC--CCCeEEEeeCCCceeEEE
Q 042434          262 TLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI--CKHTFGDHGFIVSSCAWFP--DSKRLVCGSSDTEKGIFM  337 (517)
Q Consensus       262 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~--~~~~l~~~~~d~~v~i~~  337 (517)
                      .+.+|.+.|++++|+|+|++|++|+.|++|++||+.++.  .+..+.+|...|.+++|++  ++++|++|+.|++  |.+
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~--v~i   85 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRK--VII   85 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSC--EEE
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCE--EEE
Confidence            457899999999999999999999999999999998875  4677889999999999986  4899999999999  778


Q ss_pred             EeCCCC---eeEeeeCcCCCceEEEEEccC--CCEEEEEeCCCcEEEEECCCce-----EEeeccCCCeeEEEEcCC---
Q 042434          338 CDCDGN---EIKAWRGTRIPKVLDLAVTPD--GENLISVLSDKDIRILNLGTYA-----ERVISEEHPITSLSVSVD---  404 (517)
Q Consensus       338 ~~~~~~---~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~i~~~~~s~~---  404 (517)
                      ||....   ....+ ..+...|.+++|+|+  +.++++++.|+.|++||++...     .....|...+.+++|+|+   
T Consensus        86 Wd~~~~~~~~~~~~-~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  164 (316)
T 3bg1_A           86 WREENGTWEKSHEH-AGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP  164 (316)
T ss_dssp             ECCSSSCCCEEEEE-CCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred             EECCCCcceEEEEc-cCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence            887753   23333 344568999999998  7899999999999999998753     223356678999999997   


Q ss_pred             --------------CCEEEEEeCCCeEEEEEcCCCC--ccceEEeCcccCceEEEeecCCCCC----cEEEEecCCCcEE
Q 042434          405 --------------CKNFIVNLNSQEIHMWDVAGKW--EKPFKYTGHSQNKYVIRSCFGGLDG----TFIASGSENSQIY  464 (517)
Q Consensus       405 --------------~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~~~~~i~~~~~s~~~----~~l~~~~~dg~i~  464 (517)
                                    ++++++++.|+.|++||++...  .....+.+|...   +..+.|+|++    .+|++|+.||+|+
T Consensus       165 ~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~---V~~v~~sp~~~~~~~~las~s~D~~v~  241 (316)
T 3bg1_A          165 GSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDW---VRDVAWAPSIGLPTSTIASCSQDGRVF  241 (316)
T ss_dssp             ------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSC---EEEEECCCCSSCSCCEEEEEETTCEEE
T ss_pred             ccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCc---eEEEEecCCCCCCCceEEEEcCCCeEE
Confidence                          4789999999999999996542  344556677665   6667778986    8999999999999


Q ss_pred             EEecCCC---c-eeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434          465 IWNRRNS---K-PIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ  513 (517)
Q Consensus       465 iwd~~~~---~-~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~  513 (517)
                      +||+.+.   . ....+..|...|.+++|+|++ .+|++++.||+|++|+...
T Consensus       242 iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          242 IWTCDDASSNTWSPKLLHKFNDVVWHVSWSITA-NILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             EEECSSTTCCCCBCCEEEECSSCEEEEEECTTT-CCEEEEESSSCEEEEEECT
T ss_pred             EEEccCccccchhhhhhhcCCCcEEEEEEcCCC-CEEEEEcCCCeEEEEEECC
Confidence            9998763   1 233456789999999999999 7999999999999999763

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-34  Score=276.29  Aligned_cols=255  Identities=18%  Similarity=0.245  Sum_probs=210.3

Q ss_pred             ccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCC--CCeEEEEeCCCe
Q 042434          213 ETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPD--DTKLLTCGNAEV  290 (517)
Q Consensus       213 ~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~--~~~l~s~~~dg~  290 (517)
                      +++..+.+|.+.|++++|+|++++||+|+.||.|+||++..+ .......+.+|...|++++|+|+  +++|++++.||.
T Consensus         2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~   80 (379)
T 3jrp_A            2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE-THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK   80 (379)
T ss_dssp             ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETT-EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred             CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCC-cceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence            356678999999999999999999999999999999999632 44667788999999999999987  899999999999


Q ss_pred             EEEEECCCCc--EEEEeCCCCCceEEEEEeCC--CCeEEEeeCCCceeEEEEeCCCC--eeEeeeCcCCCceEEEEEcc-
Q 042434          291 LKLWDVETGI--CKHTFGDHGFIVSSCAWFPD--SKRLVCGSSDTEKGIFMCDCDGN--EIKAWRGTRIPKVLDLAVTP-  363 (517)
Q Consensus       291 i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~d~~v~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~-  363 (517)
                      |++||+.+++  ....+..|...|.+++|+|+  +.++++++.|+.  |.+|+....  ........+...|.+++|+| 
T Consensus        81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~--i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~  158 (379)
T 3jrp_A           81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK--VSVVEFKENGTTSPIIIDAHAIGVNSASWAPA  158 (379)
T ss_dssp             EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSE--EEEEECCTTSCCCEEEEECCTTCEEEEEECCC
T ss_pred             EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCc--EEEEecCCCCceeeEEecCCCCceEEEEEcCc
Confidence            9999999987  77788889999999999999  999999999999  777777643  22223334456899999999 


Q ss_pred             ------------CCCEEEEEeCCCcEEEEECCCce------EEeeccCCCeeEEEEcCC---CCEEEEEeCCCeEEEEEc
Q 042434          364 ------------DGENLISVLSDKDIRILNLGTYA------ERVISEEHPITSLSVSVD---CKNFIVNLNSQEIHMWDV  422 (517)
Q Consensus       364 ------------~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~i~~~~~s~~---~~~l~~~~~d~~i~~~d~  422 (517)
                                  ++..+++++.||.|++||+++..      .....|...+.+++|+|+   ++++++++.||.|++||+
T Consensus       159 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~  238 (379)
T 3jrp_A          159 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ  238 (379)
T ss_dssp             C----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred             cccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeC
Confidence                        69999999999999999997654      234457889999999999   899999999999999999


Q ss_pred             CCCCccce-EEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCC
Q 042434          423 AGKWEKPF-KYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRN  470 (517)
Q Consensus       423 ~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~  470 (517)
                      +....... ...........+..+.|+|+|++|++++.||.|++|++..
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          239 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred             CCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence            87522211 2222111223366777799999999999999999999874

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=5.2e-35  Score=283.96  Aligned_cols=283  Identities=16%  Similarity=0.224  Sum_probs=226.1

Q ss_pred             cEEEEEECCCCCEE-EEeeCCCcEEEEEecCCCee-eEEEEeccCCCCEEEEEECC-CCCeEEEEeCCCeEEEEECCCC-
Q 042434          224 EVWFVQFSNNGEYL-ASSSSDCSAIIWKVLEDSKL-TLKHTLRSHQNPVSFVAWSP-DDTKLLTCGNAEVLKLWDVETG-  299 (517)
Q Consensus       224 ~v~~~~~s~~~~~l-~t~~~dg~i~iw~~~~~~~~-~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~-  299 (517)
                      ....++++|+...+ ++|+.||.|+||++...... .....+.+|.+.|.+++|+| ++++|++|+.||+|++||+.++ 
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~  115 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG  115 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence            34468888877544 45788999999998644221 22345778999999999999 8999999999999999999988 


Q ss_pred             ------cEEEEeCCCCCceEEEEEeCCC-CeEEEeeCCCceeEEEEeCCCCeeEeee--CcCCCceEEEEEccCCCEEEE
Q 042434          300 ------ICKHTFGDHGFIVSSCAWFPDS-KRLVCGSSDTEKGIFMCDCDGNEIKAWR--GTRIPKVLDLAVTPDGENLIS  370 (517)
Q Consensus       300 ------~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~d~~v~i~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~  370 (517)
                            +++..+.+|...|.+++|+|++ .+|++++.|+.  |.+||..........  ..+...|.+++|+|+++.+++
T Consensus       116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  193 (402)
T 2aq5_A          116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNV--ILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICT  193 (402)
T ss_dssp             CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSC--EEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEE
T ss_pred             CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCE--EEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEE
Confidence                  6677888999999999999998 69999999999  888998765544333  556678999999999999999


Q ss_pred             EeCCCcEEEEECCCceE--Ee-eccCCC-eeEEEEcCCCCEEEEE---eCCCeEEEEEcCCCCccceEEe-CcccCceEE
Q 042434          371 VLSDKDIRILNLGTYAE--RV-ISEEHP-ITSLSVSVDCKNFIVN---LNSQEIHMWDVAGKWEKPFKYT-GHSQNKYVI  442 (517)
Q Consensus       371 ~~~dg~i~i~d~~~~~~--~~-~~~~~~-i~~~~~s~~~~~l~~~---~~d~~i~~~d~~~~~~~~~~~~-~~~~~~~~i  442 (517)
                      ++.||.|++||++++..  .. ..+... +.++.|+|++.+++++   +.|+.|++||+++......... .+...   +
T Consensus       194 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---v  270 (402)
T 2aq5_A          194 SCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSG---V  270 (402)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSS---C
T ss_pred             EecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCc---e
Confidence            99999999999998872  22 344444 8999999999999999   7899999999987644333333 23333   4


Q ss_pred             EeecCCCCCcEEE-EecCCCcEEEEecCCCce-eEEecC--CCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCC
Q 042434          443 RSCFGGLDGTFIA-SGSENSQIYIWNRRNSKP-IEILSG--HSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQS  514 (517)
Q Consensus       443 ~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~~-~~~~~~--h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~  514 (517)
                      ..+.++|++++++ +|+.||.|++||+.++++ +..+..  |...|.+++|+|++ .+++  +.|+.+++|++.++
T Consensus       271 ~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~-~~~~--s~~~~~~~~~l~~~  343 (402)
T 2aq5_A          271 LLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKR-GLEV--NKCEIARFYKLHER  343 (402)
T ss_dssp             EEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGG-GSCG--GGTEEEEEEEEETT
T ss_pred             eEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccc-ccce--ecceeEEEEEcCCC
Confidence            4556689999886 566799999999999884 545443  56999999999999 5655  45779999998764

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-33  Score=277.54  Aligned_cols=284  Identities=10%  Similarity=0.093  Sum_probs=226.0

Q ss_pred             cCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEec-------------------------------------
Q 042434          222 KNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLR-------------------------------------  264 (517)
Q Consensus       222 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~-------------------------------------  264 (517)
                      ..++.+++|+|+|++|+++ .++.|++||+.++.....+..+.                                     
T Consensus         4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            4578899999999977766 57899999998876333333333                                     


Q ss_pred             -----------------cCCCCEEEEEECCCCCeE-EEEeCCCeEEEEECC--CCcEEEEeC--CCCCceEEEEEeCCCC
Q 042434          265 -----------------SHQNPVSFVAWSPDDTKL-LTCGNAEVLKLWDVE--TGICKHTFG--DHGFIVSSCAWFPDSK  322 (517)
Q Consensus       265 -----------------~h~~~v~~l~~s~~~~~l-~s~~~dg~i~iwd~~--~~~~~~~~~--~~~~~v~~i~~~~~~~  322 (517)
                                       +|.+.|.+++|+|++++| ++++.||.|++||+.  +++++..+.  .+...|.+++|+|+++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  162 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT  162 (450)
T ss_dssp             -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence                             344479999999999996 899999999999999  888888876  5678999999999999


Q ss_pred             eEEEeeCCCceeEEEEeCCCCeeEe----eeCcCCCceEEEEEccC---CCEEEEEeCCCcEEEEECCCce-E-E-eecc
Q 042434          323 RLVCGSSDTEKGIFMCDCDGNEIKA----WRGTRIPKVLDLAVTPD---GENLISVLSDKDIRILNLGTYA-E-R-VISE  392 (517)
Q Consensus       323 ~l~~~~~d~~v~i~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~-~-~-~~~~  392 (517)
                      +|++|+.+|.  ++.|+........    ....+...|.+++|+|+   ++++++++.|+.|++||++++. . . ...+
T Consensus       163 ~l~~~~~~g~--v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h  240 (450)
T 2vdu_B          163 TVIIADKFGD--VYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGH  240 (450)
T ss_dssp             EEEEEETTSE--EEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCC
T ss_pred             EEEEEeCCCc--EEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCC
Confidence            9999999999  8888876543221    22234468999999999   9999999999999999998876 2 2 3468


Q ss_pred             CCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcc----------------------cCceEEEeecCCCC
Q 042434          393 EHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHS----------------------QNKYVIRSCFGGLD  450 (517)
Q Consensus       393 ~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~----------------------~~~~~i~~~~~s~~  450 (517)
                      ...|.+++|+ +++++++++.|+.|++||+.++ .....+..+.                      .....+..+.++|+
T Consensus       241 ~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~  318 (450)
T 2vdu_B          241 KHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTG-KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKN  318 (450)
T ss_dssp             SSCEEEEEEC-STTEEEEEESSSEEEEEETTTC-CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSS
T ss_pred             CCceEEEEEC-CCCEEEEEeCCCeEEEEECCCC-cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCC
Confidence            8899999999 9999999999999999999876 4444444321                      11233556677899


Q ss_pred             CcEEEEec-CCCcEEEEec--CCC---ceeEEecCCCCCeeEEEecCCCCcEEEEeeC-------CCcEEEeCCCC
Q 042434          451 GTFIASGS-ENSQIYIWNR--RNS---KPIEILSGHSMTVNCVSWNPKRPKMLASASD-------DHTIRIWGPCQ  513 (517)
Q Consensus       451 ~~~l~~~~-~dg~i~iwd~--~~~---~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~-------dg~v~iw~~~~  513 (517)
                      ++++++++ .|+.|++|++  .++   +.+..+.+| +.|.+++|+|++  ++++++.       +..|.+|.+..
T Consensus       319 ~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~--~~v~~~~~~~~~~~~~~i~v~~~~~  391 (450)
T 2vdu_B          319 LPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE--FQVTLDNKESSGVQKNFAKFIEYNL  391 (450)
T ss_dssp             SSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE--EEEEECCTTCCSSCCCSEEEEEEET
T ss_pred             CCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc--EEEEEecccCCCCCCcceEEEEEEc
Confidence            99999998 8999999999  666   677888888 899999999965  4554433       55688887653

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.9e-33  Score=292.33  Aligned_cols=267  Identities=19%  Similarity=0.214  Sum_probs=214.9

Q ss_pred             cccccCCCcccccCCC------cccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCC
Q 042434          196 AISLYEDHCCGRDQIP------TETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNP  269 (517)
Q Consensus       196 ~~~~~~~~~~~~~~~~------~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~  269 (517)
                      .++.+.|+....+...      ......+.+|.+.|++++|+|+|++|++|+.||+|+|||+.++   .....+.+|...
T Consensus       398 l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~---~~~~~~~~h~~~  474 (694)
T 3dm0_A          398 IVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAG---VSTRRFVGHTKD  474 (694)
T ss_dssp             EEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---EEEEEEECCSSC
T ss_pred             EEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC---cceeEEeCCCCC
Confidence            4455555554444332      2356788999999999999999999999999999999999765   455778899999


Q ss_pred             EEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEe---CCCCCceEEEEEeCCC--CeEEEeeCCCceeEEEEeCCCCe
Q 042434          270 VSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTF---GDHGFIVSSCAWFPDS--KRLVCGSSDTEKGIFMCDCDGNE  344 (517)
Q Consensus       270 v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~i~~~~~~--~~l~~~~~d~~v~i~~~~~~~~~  344 (517)
                      |.+++|+|++++|++|+.|++|++||..........   .+|...|.+++|+|++  ..+++++.|+.  |.+||..+..
T Consensus       475 v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~--v~vwd~~~~~  552 (694)
T 3dm0_A          475 VLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKT--VKVWNLSNCK  552 (694)
T ss_dssp             EEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSC--EEEEETTTCC
T ss_pred             EEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCe--EEEEECCCCc
Confidence            999999999999999999999999998655433332   3688899999999986  58999999999  8888988766


Q ss_pred             eEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 042434          345 IKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVA  423 (517)
Q Consensus       345 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~  423 (517)
                      .......|.+.|.+++|+|+++++++++.||.|++||+++++ .........+.+++|+|++.++++++ ++.|++||+.
T Consensus       553 ~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~  631 (694)
T 3dm0_A          553 LRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAAT-EHGIKIWDLE  631 (694)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEE-TTEEEEEETT
T ss_pred             EEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEc-CCCEEEEECC
Confidence            655555566799999999999999999999999999999887 44455667899999999988777665 5669999998


Q ss_pred             CCCccceEEeCccc----------------CceEEEeecCCCCCcEEEEecCCCcEEEEecC
Q 042434          424 GKWEKPFKYTGHSQ----------------NKYVIRSCFGGLDGTFIASGSENSQIYIWNRR  469 (517)
Q Consensus       424 ~~~~~~~~~~~~~~----------------~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~  469 (517)
                      +. .....+..+..                ....+.++.|+|+|++|++|+.||.|++||+.
T Consensus       632 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          632 SK-SIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             TT-EEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             CC-CChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence            76 44333322111                11124566779999999999999999999985

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.2e-33  Score=271.14  Aligned_cols=272  Identities=18%  Similarity=0.228  Sum_probs=218.5

Q ss_pred             ccccCCCcccccCCCcccEEEecc-ccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEE
Q 042434          197 ISLYEDHCCGRDQIPTETVQILTE-HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAW  275 (517)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~l~~-h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~  275 (517)
                      ....++....|+....+....+.. |.+.|++++|+|++++|++|+.||.|++||+.++   .....+.+|...|.+++|
T Consensus       108 ~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~  184 (401)
T 4aez_A          108 AVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ---TKLRTMAGHQARVGCLSW  184 (401)
T ss_dssp             EEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEE
T ss_pred             EEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC---eEEEEecCCCCceEEEEE
Confidence            333444555666666677766665 8999999999999999999999999999999765   455778899999999999


Q ss_pred             CCCCCeEEEEeCCCeEEEEECC-CCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCC
Q 042434          276 SPDDTKLLTCGNAEVLKLWDVE-TGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIP  354 (517)
Q Consensus       276 s~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~  354 (517)
                        +++.+++++.||.|++||+. .+.....+..|...|.+++|+|++.+|++|+.|+.  |.+||............+..
T Consensus       185 --~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~--v~iwd~~~~~~~~~~~~~~~  260 (401)
T 4aez_A          185 --NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNV--VQIWDARSSIPKFTKTNHNA  260 (401)
T ss_dssp             --ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC--EEEEETTCSSEEEEECCCSS
T ss_pred             --CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCe--EEEccCCCCCccEEecCCcc
Confidence              56799999999999999998 56678888899999999999999999999999999  88899886555444444556


Q ss_pred             ceEEEEEccCCC-EEEEEe--CCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEE--eCCCeEEEEEcCCCC-c
Q 042434          355 KVLDLAVTPDGE-NLISVL--SDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVN--LNSQEIHMWDVAGKW-E  427 (517)
Q Consensus       355 ~i~~~~~~~~~~-~l~~~~--~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~--~~d~~i~~~d~~~~~-~  427 (517)
                      .|.+++|+|++. .+++++  .|+.|++||+.++. .....+...+.+++|+|+++.++++  +.||.|++||+.+.. .
T Consensus       261 ~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~  340 (401)
T 4aez_A          261 AVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLT  340 (401)
T ss_dssp             CCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEE
T ss_pred             eEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccce
Confidence            899999999775 555554  69999999999887 5555677889999999999999995  489999999997752 2


Q ss_pred             cceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEec
Q 042434          428 KPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILS  478 (517)
Q Consensus       428 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  478 (517)
                      ....+.+|...   +..+.++|+|.+|++++.||.|++||+.+++.+....
T Consensus       341 ~~~~~~~h~~~---v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~  388 (401)
T 4aez_A          341 KQVDIPAHDTR---VLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPI  388 (401)
T ss_dssp             EEEEEECCSSC---CCEEEECTTSSEEEEECTTSEEEEEECCC--------
T ss_pred             eEEEecCCCCC---EEEEEECCCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence            23345566655   4455669999999999999999999999998776543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-33  Score=271.47  Aligned_cols=248  Identities=17%  Similarity=0.253  Sum_probs=208.4

Q ss_pred             EEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECC--CCcEEEEeCCCCCceEEEEEeCC--CCeEEEeeCCCceeE
Q 042434          260 KHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVE--TGICKHTFGDHGFIVSSCAWFPD--SKRLVCGSSDTEKGI  335 (517)
Q Consensus       260 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~d~~v~i  335 (517)
                      ...+.+|.+.|++++|+|++++|++|+.||.|++||+.  +++.+..+..|...|++++|+++  +.+|++++.||.  |
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~--v   81 (379)
T 3jrp_A            4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK--V   81 (379)
T ss_dssp             -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC--E
T ss_pred             cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE--E
Confidence            45678899999999999999999999999999999998  56777888899999999999987  999999999999  6


Q ss_pred             EEEeCCCCe--eEeeeCcCCCceEEEEEccC--CCEEEEEeCCCcEEEEECCCce----EEeeccCCCeeEEEEcC----
Q 042434          336 FMCDCDGNE--IKAWRGTRIPKVLDLAVTPD--GENLISVLSDKDIRILNLGTYA----ERVISEEHPITSLSVSV----  403 (517)
Q Consensus       336 ~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~i~~~~~s~----  403 (517)
                      .+|+.....  .......+...|.+++|+|+  +..+++++.|+.|++||+++..    .....+...+.+++|+|    
T Consensus        82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  161 (379)
T 3jrp_A           82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE  161 (379)
T ss_dssp             EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC--
T ss_pred             EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccc
Confidence            667766543  33333445568999999999  9999999999999999998873    34557788999999999    


Q ss_pred             ---------CCCEEEEEeCCCeEEEEEcCCCCc---cceEEeCcccCceEEEeecCCCC---CcEEEEecCCCcEEEEec
Q 042434          404 ---------DCKNFIVNLNSQEIHMWDVAGKWE---KPFKYTGHSQNKYVIRSCFGGLD---GTFIASGSENSQIYIWNR  468 (517)
Q Consensus       404 ---------~~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~~~~~~~~~i~~~~~s~~---~~~l~~~~~dg~i~iwd~  468 (517)
                               ++..+++++.|+.|++||++....   ....+.+|...   +.++.|+|+   +.+|++++.||.|++||+
T Consensus       162 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~---v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~  238 (379)
T 3jrp_A          162 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW---VRDVAWSPTVLLRSYLASVSQDRTCIIWTQ  238 (379)
T ss_dssp             --------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC---EEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred             ccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCc---EeEEEECCCCCCCCeEEEEeCCCEEEEEeC
Confidence                     699999999999999999976532   23445556554   666777999   899999999999999999


Q ss_pred             CCCc---eeEE--ecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434          469 RNSK---PIEI--LSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ  513 (517)
Q Consensus       469 ~~~~---~~~~--~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~  513 (517)
                      .++.   ....  ...|...|++++|+|++ .+|++++.||.|++|++..
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          239 DNEQGPWKKTLLKEEKFPDVLWRASWSLSG-NVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             SSTTSCCEEEESSSSCCSSCEEEEEECSSS-CCEEEEESSSSEEEEEEEE
T ss_pred             CCCCccceeeeeccccCCCcEEEEEEcCCC-CEEEEecCCCcEEEEeCCC
Confidence            9874   2222  23488999999999999 7999999999999999874

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=8.8e-33  Score=261.84  Aligned_cols=267  Identities=19%  Similarity=0.296  Sum_probs=216.5

Q ss_pred             EeeCCCcEE--EEEecCCCeeeEEEEeccCCCCEEEEEECCC-CCeEEEEeCCCeEEEEECCCCc-----EEEEeCCCCC
Q 042434          239 SSSSDCSAI--IWKVLEDSKLTLKHTLRSHQNPVSFVAWSPD-DTKLLTCGNAEVLKLWDVETGI-----CKHTFGDHGF  310 (517)
Q Consensus       239 t~~~dg~i~--iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~  310 (517)
                      +|...|+..  ++... .++.....++.+|.+.|++++|+|+ +++|+||+.||+|++||+.+++     +...+.+|..
T Consensus         9 ~g~d~g~~~~~~~~~~-~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~   87 (340)
T 4aow_A            9 SGVDLGTENLYFQSMM-TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSH   87 (340)
T ss_dssp             ------------------CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSS
T ss_pred             cccCCCCccEEEEEcc-CCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCC
Confidence            444445433  33332 3455677889999999999999997 5899999999999999987653     5677889999


Q ss_pred             ceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce---E
Q 042434          311 IVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA---E  387 (517)
Q Consensus       311 ~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~  387 (517)
                      .|.+++|+|++++|++++.|+.  +..|+................+....+++++..+++++.|+.+++||.....   .
T Consensus        88 ~V~~~~~s~dg~~l~s~~~d~~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~  165 (340)
T 4aow_A           88 FVSDVVISSDGQFALSGSWDGT--LRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTV  165 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTSE--EEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEE
T ss_pred             CEEEEEECCCCCEEEEEccccc--ceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEE
Confidence            9999999999999999999999  8888888776666666666688999999999999999999999999998765   2


Q ss_pred             EeeccCCCeeEEEEcCCC--CEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEE
Q 042434          388 RVISEEHPITSLSVSVDC--KNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYI  465 (517)
Q Consensus       388 ~~~~~~~~i~~~~~s~~~--~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i  465 (517)
                      ....+...+..++|++++  ..+++++.|+.|++||+++. .....+.+|...   +.++.++|++++|++|+.||.|++
T Consensus       166 ~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~-~~~~~~~~h~~~---v~~~~~s~~~~~l~s~s~Dg~i~i  241 (340)
T 4aow_A          166 QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC-KLKTNHIGHTGY---LNTVTVSPDGSLCASGGKDGQAML  241 (340)
T ss_dssp             CSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTT-EEEEEECCCSSC---EEEEEECTTSSEEEEEETTCEEEE
T ss_pred             EeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCC-ceeeEecCCCCc---EEEEEECCCCCEEEEEeCCCeEEE
Confidence            334567789999998865  56888999999999999887 667777777765   556667999999999999999999


Q ss_pred             EecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434          466 WNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS  515 (517)
Q Consensus       466 wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~  515 (517)
                      ||+.+++++..+.. ...|.+++|+|++  .+++++.|+.|++||+.++.
T Consensus       242 wd~~~~~~~~~~~~-~~~v~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~  288 (340)
T 4aow_A          242 WDLNEGKHLYTLDG-GDIINALCFSPNR--YWLCAATGPSIKIWDLEGKI  288 (340)
T ss_dssp             EETTTTEEEEEEEC-SSCEEEEEECSSS--SEEEEEETTEEEEEETTTTE
T ss_pred             EEeccCceeeeecC-CceEEeeecCCCC--ceeeccCCCEEEEEECCCCe
Confidence            99999999998875 4689999999987  46677789999999997653

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.1e-33  Score=267.12  Aligned_cols=286  Identities=17%  Similarity=0.220  Sum_probs=235.5

Q ss_pred             HHhccccccCCCCCc-cccc-cCCCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeee
Q 042434          181 VTSQIDSCQYHNSSV-AISL-YEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLT  258 (517)
Q Consensus       181 ~~~q~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~  258 (517)
                      +...+.++.+++... .+.. .++....|+....+.+..+.+|.+.|++++|+|++++|++++.||.|++||+.++..  
T Consensus        31 h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--  108 (369)
T 3zwl_B           31 HERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQC--  108 (369)
T ss_dssp             CSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE--
T ss_pred             eeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE--
Confidence            345567777777655 3333 344566677777889999999999999999999999999999999999999976643  


Q ss_pred             EEEEeccCCCCEEEEEECCCCCeEEEEeCC-----CeEEEEECCCCc-----------EEEEeCCCCC--ceEEEEEeCC
Q 042434          259 LKHTLRSHQNPVSFVAWSPDDTKLLTCGNA-----EVLKLWDVETGI-----------CKHTFGDHGF--IVSSCAWFPD  320 (517)
Q Consensus       259 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-----g~i~iwd~~~~~-----------~~~~~~~~~~--~v~~i~~~~~  320 (517)
                       ...+. |...|.+++|+|+++++++++.+     |.|.+||+.++.           ....+..|..  .+.+++|+|+
T Consensus       109 -~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (369)
T 3zwl_B          109 -VATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTK  186 (369)
T ss_dssp             -EEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGG
T ss_pred             -EEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCC
Confidence             34444 88999999999999999999999     999999997653           2333445555  8999999999


Q ss_pred             CCeEEEeeCCCceeEEEEeCCC-CeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEeeccCCCeeE
Q 042434          321 SKRLVCGSSDTEKGIFMCDCDG-NEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVISEEHPITS  398 (517)
Q Consensus       321 ~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~  398 (517)
                      ++.+++++.||.  |.+||... .........+...|.+++|+|+++++++++.|+.|++||+++.. .....+...+..
T Consensus       187 ~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~  264 (369)
T 3zwl_B          187 GKYIIAGHKDGK--ISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNT  264 (369)
T ss_dssp             GCEEEEEETTSE--EEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEE
T ss_pred             CCEEEEEcCCCE--EEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCcee
Confidence            999999999999  88888876 34433333445689999999999999999999999999999877 555568889999


Q ss_pred             EEEcCCCCEEEEEeCCC--------------eEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEE
Q 042434          399 LSVSVDCKNFIVNLNSQ--------------EIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIY  464 (517)
Q Consensus       399 ~~~s~~~~~l~~~~~d~--------------~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~  464 (517)
                      ++|+|+++++++++.++              .+++||.... .....+.+|...   +..+.|+|++++|++++.||.|+
T Consensus       265 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~---v~~~~~s~~~~~l~s~~~dg~v~  340 (369)
T 3zwl_B          265 AVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE-EEIGRVQGHFGP---LNTVAISPQGTSYASGGEDGFIR  340 (369)
T ss_dssp             EEECSSSSEEEEEECCC-------------CEEEEEETTTC-CEEEEEECCSSC---EEEEEECTTSSEEEEEETTSEEE
T ss_pred             EEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC-cchhheecccCc---EEEEEECCCCCEEEEEcCCCeEE
Confidence            99999999999999988              8999999877 666777777765   66667799999999999999999


Q ss_pred             EEecCCCceeEE
Q 042434          465 IWNRRNSKPIEI  476 (517)
Q Consensus       465 iwd~~~~~~~~~  476 (517)
                      +|++.++.....
T Consensus       341 iw~~~~~~~~~~  352 (369)
T 3zwl_B          341 LHHFEKSYFDFK  352 (369)
T ss_dssp             EEEECHHHHTCC
T ss_pred             EEECccccchhH
Confidence            999987654433

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=9.8e-34  Score=274.58  Aligned_cols=284  Identities=11%  Similarity=0.080  Sum_probs=226.5

Q ss_pred             HhccccccCCCCCccccccCCCcccccCCCcc------cEEEeccccCcEEEEEECCC----C---CEEEEeeCCCcEEE
Q 042434          182 TSQIDSCQYHNSSVAISLYEDHCCGRDQIPTE------TVQILTEHKNEVWFVQFSNN----G---EYLASSSSDCSAII  248 (517)
Q Consensus       182 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~h~~~v~~~~~s~~----~---~~l~t~~~dg~i~i  248 (517)
                      ...+.++.+++.....+..++....|+....+      ....+.+|...|++++|+|+    |   ++|++|+.||.|++
T Consensus        16 ~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~i   95 (397)
T 1sq9_A           16 DADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLF   95 (397)
T ss_dssp             SSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEE
T ss_pred             hcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEE
Confidence            34566677776322334444445555555555      68899999999999999999    9   99999999999999


Q ss_pred             EEecCCCe--eeEEEEeccC-----CCCEEEEEEC----CCCCe-EEEEeCCCeEEEEECCC------CcEEE-----Ee
Q 042434          249 WKVLEDSK--LTLKHTLRSH-----QNPVSFVAWS----PDDTK-LLTCGNAEVLKLWDVET------GICKH-----TF  305 (517)
Q Consensus       249 w~~~~~~~--~~~~~~~~~h-----~~~v~~l~~s----~~~~~-l~s~~~dg~i~iwd~~~------~~~~~-----~~  305 (517)
                      |++.++..  ......+..|     ...|.+++|+    |++++ |++++.||.|++||+.+      ++.+.     .+
T Consensus        96 w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  175 (397)
T 1sq9_A           96 YRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLEL  175 (397)
T ss_dssp             EEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEE
T ss_pred             EEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCccee
Confidence            99976643  1114667778     5999999999    99999 99999999999999988      66555     55


Q ss_pred             -------CCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCe-eEeeeCc--C---CCceEEEEEccCCCEEEEEe
Q 042434          306 -------GDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNE-IKAWRGT--R---IPKVLDLAVTPDGENLISVL  372 (517)
Q Consensus       306 -------~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~-~~~~~~~--~---~~~i~~~~~~~~~~~l~~~~  372 (517)
                             ..|...|.+++|+|++ .+++++.|+.  |.+||..... +..+...  +   ...+.+++|+|+++++++++
T Consensus       176 ~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~  252 (397)
T 1sq9_A          176 QGTVESPMTPSQFATSVDISERG-LIATGFNNGT--VQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAH  252 (397)
T ss_dssp             EEEECCSSSSCCCCCEEEECTTS-EEEEECTTSE--EEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEE
T ss_pred             eeeeccccCCCCCceEEEECCCc-eEEEEeCCCc--EEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEe
Confidence                   4588999999999999 9999999999  8888987544 4444440  3   56899999999999999999


Q ss_pred             CC---CcEEEEECCCce--EEeec-------------cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEe-
Q 042434          373 SD---KDIRILNLGTYA--ERVIS-------------EEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYT-  433 (517)
Q Consensus       373 ~d---g~i~i~d~~~~~--~~~~~-------------~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-  433 (517)
                      .|   |.|++||+++.+  .....             +...+.+++|+|+++++++++.|+.|++||+.+. .....+. 
T Consensus       253 ~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~  331 (397)
T 1sq9_A          253 DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK-ERITTLNM  331 (397)
T ss_dssp             EETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT-EEEEEEEC
T ss_pred             cCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC-ceeEEEec
Confidence            99   999999998877  33334             7889999999999999999999999999999877 6666676 


Q ss_pred             -----Cc---------------ccCceEEEeecCCCCC----------cEEEEecCCCcEEEEecCCCc
Q 042434          434 -----GH---------------SQNKYVIRSCFGGLDG----------TFIASGSENSQIYIWNRRNSK  472 (517)
Q Consensus       434 -----~~---------------~~~~~~i~~~~~s~~~----------~~l~~~~~dg~i~iwd~~~~~  472 (517)
                           +|               ..   .+..+.|+|++          ++|++++.||.|++||+.+|+
T Consensus       332 ~~~~~~~~~~~~~g~~~~~~~~~~---~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          332 HCDDIEIEEDILAVDEHGDSLAEP---GVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             CGGGCSSGGGCCCBCTTSCBCSSC---CEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             ccCcccchhhhhccccccccccCC---ceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence                 55               33   36667778998          799999999999999998764

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=7.7e-33  Score=270.85  Aligned_cols=248  Identities=18%  Similarity=0.281  Sum_probs=210.0

Q ss_pred             EEeccCCCCEEEEEECCC-CCeEEEEeCCCeEEEEECCC----------CcEEEEeCCCCCceEEEEEeCCCC-eEEEee
Q 042434          261 HTLRSHQNPVSFVAWSPD-DTKLLTCGNAEVLKLWDVET----------GICKHTFGDHGFIVSSCAWFPDSK-RLVCGS  328 (517)
Q Consensus       261 ~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~  328 (517)
                      .....|.+.|++++|+|+ +.+|++++.||.|++||+.+          ......+..|...|.+++|+|++. +|++|+
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            445679999999999997 68999999999999999976          567778889999999999999988 999999


Q ss_pred             CCCceeEEEEeCCCCe-----e--EeeeCcCCCceEEEEEcc-CCCEEEEEeCCCcEEEEECCCc---e--EEeeccCCC
Q 042434          329 SDTEKGIFMCDCDGNE-----I--KAWRGTRIPKVLDLAVTP-DGENLISVLSDKDIRILNLGTY---A--ERVISEEHP  395 (517)
Q Consensus       329 ~d~~v~i~~~~~~~~~-----~--~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~---~--~~~~~~~~~  395 (517)
                      .||.  |.+|+.....     +  ......+...|.+++|+| ++..+++++.||.|++||+++.   .  .....+...
T Consensus       202 ~dg~--i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  279 (430)
T 2xyi_A          202 DDHT--ICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAE  279 (430)
T ss_dssp             TTSC--EEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSC
T ss_pred             CCCe--EEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCC
Confidence            9999  7778876511     1  122234556899999999 6789999999999999999876   2  344578889


Q ss_pred             eeEEEEcCCCC-EEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCc-EEEEecCCCcEEEEecCC---
Q 042434          396 ITSLSVSVDCK-NFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGT-FIASGSENSQIYIWNRRN---  470 (517)
Q Consensus       396 i~~~~~s~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iwd~~~---  470 (517)
                      +.+++|+|++. .+++++.||.|++||++........+.+|...   +..+.|+|+++ ++++++.||.|++||+..   
T Consensus       280 v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~---v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~  356 (430)
T 2xyi_A          280 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDE---IFQVQWSPHNETILASSGTDRRLHVWDLSKIGE  356 (430)
T ss_dssp             EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSC---EEEEEECSSCTTEEEEEETTSCCEEEEGGGTTC
T ss_pred             eEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCC---EEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcc
Confidence            99999999987 58899999999999998865677788887765   55666789884 799999999999999987   


Q ss_pred             -----------CceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434          471 -----------SKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ  513 (517)
Q Consensus       471 -----------~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~  513 (517)
                                 .+++..+.+|...|++++|+|+++.++++++.||.|+||++..
T Consensus       357 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~  410 (430)
T 2xyi_A          357 EQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE  410 (430)
T ss_dssp             CCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred             ccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence                       3677888899999999999999955999999999999999864

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.3e-33  Score=270.28  Aligned_cols=281  Identities=15%  Similarity=0.195  Sum_probs=223.2

Q ss_pred             HhccccccCCCC----C-c-cccccCCCcccccCCCcccEEEecc-----ccCcEEEEEECCC----CCEEEEeeCCCcE
Q 042434          182 TSQIDSCQYHNS----S-V-AISLYEDHCCGRDQIPTETVQILTE-----HKNEVWFVQFSNN----GEYLASSSSDCSA  246 (517)
Q Consensus       182 ~~q~~~~~~~~~----~-~-~~~~~~~~~~~~~~~~~~~~~~l~~-----h~~~v~~~~~s~~----~~~l~t~~~dg~i  246 (517)
                      ...+..+.|++.    . . ..+..++....|+....+.+..+..     |...|++++|+|+    |.+|++|+.||.|
T Consensus        18 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i   97 (366)
T 3k26_A           18 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGII   97 (366)
T ss_dssp             CSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEE
T ss_pred             CCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEE
Confidence            445666777752    2 2 3444455556666665666666664     5578999999998    7799999999999


Q ss_pred             EEEEecCCCeeeEEEEeccCCCCEEEEEECC-CCCeEEEEeCCCeEEEEECCCCcEEEEe---CCCCCceEEEEEeCCCC
Q 042434          247 IIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP-DDTKLLTCGNAEVLKLWDVETGICKHTF---GDHGFIVSSCAWFPDSK  322 (517)
Q Consensus       247 ~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~i~~~~~~~  322 (517)
                      ++||+.++   .....+.+|...|.+++|+| ++++|++++.||.|++||+.+++.+..+   ..|...|.+++|+|+++
T Consensus        98 ~v~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  174 (366)
T 3k26_A           98 RIINPITM---QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGE  174 (366)
T ss_dssp             EEECTTTC---CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSS
T ss_pred             EEEEchhc---eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCC
Confidence            99999765   45567889999999999999 8999999999999999999999999888   68999999999999999


Q ss_pred             eEEEeeCCCceeEEEEeCCCCeeEe-e---------------------------eCcCCCceEEEEEccCCCEEEEEeCC
Q 042434          323 RLVCGSSDTEKGIFMCDCDGNEIKA-W---------------------------RGTRIPKVLDLAVTPDGENLISVLSD  374 (517)
Q Consensus       323 ~l~~~~~d~~v~i~~~~~~~~~~~~-~---------------------------~~~~~~~i~~~~~~~~~~~l~~~~~d  374 (517)
                      +|++++.||.  +.+||........ +                           ...+...|.+++|+  ++++++++.|
T Consensus       175 ~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d  250 (366)
T 3k26_A          175 KIMSCGMDHS--LKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCE  250 (366)
T ss_dssp             EEEEEETTSC--EEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSS
T ss_pred             EEEEecCCCC--EEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecC
Confidence            9999999999  8888877532211 1                           11255689999998  7799999999


Q ss_pred             CcEEEEECCCce----------------EEeeccCCCeeEEEEcCC--CCEEEEEeCCCeEEEEEcCCCCc---cceEEe
Q 042434          375 KDIRILNLGTYA----------------ERVISEEHPITSLSVSVD--CKNFIVNLNSQEIHMWDVAGKWE---KPFKYT  433 (517)
Q Consensus       375 g~i~i~d~~~~~----------------~~~~~~~~~i~~~~~s~~--~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~  433 (517)
                      +.|++||+.+..                .....+...+.+++|+|+  ++++++++.||.|++||+.+...   ....+.
T Consensus       251 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  330 (366)
T 3k26_A          251 NAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLT  330 (366)
T ss_dssp             SEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEEC
T ss_pred             CEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEc
Confidence            999999987652                233456778999999999  99999999999999999987632   223455


Q ss_pred             CcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCC
Q 042434          434 GHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRN  470 (517)
Q Consensus       434 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~  470 (517)
                      +|.. ...+..+.|+|++++|++++.||.|++||+.+
T Consensus       331 ~~~~-~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          331 HHKC-GAAIRQTSFSRDSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             CTTC-CSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             cccc-CCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence            5521 12366677799999999999999999999853

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.8e-34  Score=282.56  Aligned_cols=269  Identities=10%  Similarity=-0.010  Sum_probs=202.3

Q ss_pred             CcccEEEeccccCcEEEEEECCCC---------CEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCe
Q 042434          211 PTETVQILTEHKNEVWFVQFSNNG---------EYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTK  281 (517)
Q Consensus       211 ~~~~~~~l~~h~~~v~~~~~s~~~---------~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~  281 (517)
                      +......+. +.+.|++++|+|++         ++||+|+.++..                          -..+|+++.
T Consensus       123 ~~r~~~~~~-~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~--------------------------~~~~~~~~~  175 (524)
T 2j04_B          123 GKRRGFIYN-VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD--------------------------EPLNEHLEM  175 (524)
T ss_dssp             CCSCEEEEE-CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC--------------------------------------
T ss_pred             CCcceEEEE-CCCceeEEEecccCCCCccCcCCeEEEEEEecccC--------------------------Cccchhhhh
Confidence            344444555 78999999999987         799999876420                          013689999


Q ss_pred             EEEEeCCCeEEEEECCCCcEE----EEeCCCCCceEEEEEeCC------CCeEEEeeCCCceeEEEEeCCCCee------
Q 042434          282 LLTCGNAEVLKLWDVETGICK----HTFGDHGFIVSSCAWFPD------SKRLVCGSSDTEKGIFMCDCDGNEI------  345 (517)
Q Consensus       282 l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~v~~i~~~~~------~~~l~~~~~d~~v~i~~~~~~~~~~------  345 (517)
                      +++++.|++|+|||+.+++..    ..+..|...|.+++|+|+      +.+|++++.||+  |.+|+......      
T Consensus       176 laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~Dgt--vrlWd~~~~~~~~~~~~  253 (524)
T 2j04_B          176 FDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGT--INFLEIIDNATDVHVFK  253 (524)
T ss_dssp             ------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSC--EEEEECCCCSSSSSEEE
T ss_pred             hccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCe--EEEEEcCCCccccccce
Confidence            999999999999999887642    345577889999999997      579999999999  66777653311      


Q ss_pred             ------EeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce---EEeeccCCCeeEE--EEcCCC-CEEEEEeC
Q 042434          346 ------KAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA---ERVISEEHPITSL--SVSVDC-KNFIVNLN  413 (517)
Q Consensus       346 ------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~--~~s~~~-~~l~~~~~  413 (517)
                            ..+. .+...|.+++|++++ .|++|+.||+|++||+++..   .....|...|.++  +|+|++ .+|++++.
T Consensus       254 ~~~~p~~~l~-~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~  331 (524)
T 2j04_B          254 MCEKPSLTLS-LADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAV  331 (524)
T ss_dssp             CCCSCSEEEC-CTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEET
T ss_pred             eecCceEEEE-cCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEecc
Confidence                  1222 344689999999864 89999999999999998754   3456788899999  578887 89999999


Q ss_pred             CCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCC
Q 042434          414 SQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKR  493 (517)
Q Consensus       414 d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~  493 (517)
                      |++|++||+++. .....+.+|..... +.++.|+|++..+++++.|++|++||++++.++.++.+|.+.|++|+|+|++
T Consensus       332 D~tvklWD~~~~-~~~~~~~~~~~~~~-v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g  409 (524)
T 2j04_B          332 DGYFYIFNPKDI-ATTKTTVSRFRGSN-LVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLH  409 (524)
T ss_dssp             TSEEEEECGGGH-HHHCEEEEECSCCS-CCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSC
T ss_pred             CCeEEEEECCCC-CcccccccccccCc-ccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCC
Confidence            999999999875 44455555543211 3455679999999999999999999999999989999999999999999999


Q ss_pred             CcEEEEeeCCCcEEEeCCCC
Q 042434          494 PKMLASASDDHTIRIWGPCQ  513 (517)
Q Consensus       494 ~~~l~s~~~dg~v~iw~~~~  513 (517)
                       .+|++|+.||+|++|++..
T Consensus       410 -~~l~Sgs~Dgtv~lwd~~~  428 (524)
T 2j04_B          410 -PMVLAGSADGSLIITNAAR  428 (524)
T ss_dssp             -CBCEEEETTTEEECCBSCS
T ss_pred             -CeEEEEECCCEEEEEechH
Confidence             6899999999999999764

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=3.2e-32  Score=265.72  Aligned_cols=278  Identities=19%  Similarity=0.263  Sum_probs=219.9

Q ss_pred             CCCcccccCCCcccEEEe--ccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCC
Q 042434          201 EDHCCGRDQIPTETVQIL--TEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPD  278 (517)
Q Consensus       201 ~~~~~~~~~~~~~~~~~l--~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~  278 (517)
                      +.....|+...++....+  .+|.+.|++++|+|+|++||+|+.||.|+|||+.++   ..+..+.+|...+.+++|+  
T Consensus       124 d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~---~~~~~~~~h~~~v~~~s~~--  198 (420)
T 4gga_A          124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ---KRLRNMTSHSARVGSLSWN--  198 (420)
T ss_dssp             TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEEE--
T ss_pred             CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCC---cEEEEEeCCCCceEEEeeC--
Confidence            555667777777777665  468889999999999999999999999999999766   5667889999999998885  


Q ss_pred             CCeEEEEeCCCeEEEEECCCC-cEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCe----eEeeeCcCC
Q 042434          279 DTKLLTCGNAEVLKLWDVETG-ICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNE----IKAWRGTRI  353 (517)
Q Consensus       279 ~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~----~~~~~~~~~  353 (517)
                      +..|++|+.|+.+++||.... ..+..+.+|...+..+.|+|++.++++++.|+.  +.+|+.....    .......+.
T Consensus       199 ~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~--v~i~~~~~~~~~~~~~~~~~~~~  276 (420)
T 4gga_A          199 SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNL--VNVWPSAPGEGGWVPLQTFTQHQ  276 (420)
T ss_dssp             TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC--EEEEESSCCSSCSCCSEEECCCS
T ss_pred             CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeecccc--ceEEeeccccccceeeeeecccC
Confidence            679999999999999998764 456778899999999999999999999999999  7777765322    122233445


Q ss_pred             CceEEEEEccCCC-EEEE--EeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEe--CCCeEEEEEcCCCCc
Q 042434          354 PKVLDLAVTPDGE-NLIS--VLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNL--NSQEIHMWDVAGKWE  427 (517)
Q Consensus       354 ~~i~~~~~~~~~~-~l~~--~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~--~d~~i~~~d~~~~~~  427 (517)
                      ..|.+++|+|++. .+++  |+.|+.|++||+.++. .........+.++.|+|+++.+++++  .|+.|++||+.+. .
T Consensus       277 ~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~-~  355 (420)
T 4gga_A          277 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM-A  355 (420)
T ss_dssp             SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC-C
T ss_pred             CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCC-c
Confidence            6899999999765 4444  4579999999999988 55566777899999999999998875  6899999999887 7


Q ss_pred             cceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEe
Q 042434          428 KPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSW  489 (517)
Q Consensus       428 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~  489 (517)
                      .+..+.+|...   |.++.|+|+|++|++|+.||+|++||+....+......+...+....+
T Consensus       356 ~v~~l~gH~~~---V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s~  414 (420)
T 4gga_A          356 KVAELKGHTSR---VLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAAKSSL  414 (420)
T ss_dssp             EEEEECCCSSC---EEEEEECTTSSCEEEEETTTEEEEECCSCSSCC---------------
T ss_pred             EEEEEcCCCCC---EEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCcccccc
Confidence            78888898876   666677999999999999999999999887777666655554444333

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.9e-34  Score=273.87  Aligned_cols=263  Identities=8%  Similarity=0.031  Sum_probs=208.0

Q ss_pred             eccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECC
Q 042434          218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVE  297 (517)
Q Consensus       218 l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~  297 (517)
                      -+.-...|.+++|||||+++|+++.|++|+  |....      ..+.+|...|.+++|+|+|       .++.+.+|+. 
T Consensus        11 ~~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~------~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~-   74 (588)
T 2j04_A           11 RKEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYA------KDINCNSKNLFHVKEFPLE-------FENKLDFELA-   74 (588)
T ss_dssp             SCCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCC------SCCSSBGGGTEEEEEECCC-------CCCTTTTSCC-
T ss_pred             HhHhhccEEEEEECCCCCEEEEEcCCceee--ccccc------ceecCCCccEEEEEECCCC-------CcceEEEEeC-
Confidence            345668899999999999999999999999  65433      2347899999999999998       4555555554 


Q ss_pred             CCcEEEEeC-CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCC----CceEEEEEccCCCEEEEEe
Q 042434          298 TGICKHTFG-DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRI----PKVLDLAVTPDGENLISVL  372 (517)
Q Consensus       298 ~~~~~~~~~-~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~  372 (517)
                        +....+. .|...|.+++|+|+|..|++++.||.  +.+|+..+ .+..+. ++.    ..+.+++|+|||++|++|+
T Consensus        75 --~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~--V~iwd~~~-~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs  148 (588)
T 2j04_A           75 --QQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGN--VSVFKDNK-MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGN  148 (588)
T ss_dssp             --CSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSC--EEEEETTE-EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEE
T ss_pred             --CCceEeecCCCCcEEEEEECCCCCEEEEEeCCCc--EEEEeCCc-eeeecc-CCCccccccEEEEEEcCCCCEEEEEc
Confidence              3222333 55889999999999999999999999  77788554 444444 332    2599999999999999999


Q ss_pred             CCCcEEEEECCCceE--------Ee-----eccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcc--ceEE-eCcc
Q 042434          373 SDKDIRILNLGTYAE--------RV-----ISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEK--PFKY-TGHS  436 (517)
Q Consensus       373 ~dg~i~i~d~~~~~~--------~~-----~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~--~~~~-~~~~  436 (517)
                      .||+|++||+.++..        ..     ..|...|.+++|+|+|  +++++.|+.|++||+.+....  ...+ .+|.
T Consensus       149 ~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~  226 (588)
T 2j04_A          149 EDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASR  226 (588)
T ss_dssp             TTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCS
T ss_pred             CCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeeccccc
Confidence            999999999988731        22     3456799999999999  889999999999999876321  2344 3555


Q ss_pred             cCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEe--cCCCCcEEEEeeCCCcEEEeCCC
Q 042434          437 QNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSW--NPKRPKMLASASDDHTIRIWGPC  512 (517)
Q Consensus       437 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~--~~~~~~~l~s~~~dg~v~iw~~~  512 (517)
                      ..   +..+.|+  |+.||+++ +|+|++||+.+++......+|.+.|.+++|  +|++ ..+++++.||+ ++|..+
T Consensus       227 ~~---V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~-~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          227 RK---ITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKES-TILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             SC---CCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSC-EEEEECSSCEE-EEEESS
T ss_pred             Cc---EEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCC-CEEEEEcCCCC-EEEeec
Confidence            44   4444456  58899887 699999999988874444489999999999  9999 79999999999 999864

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5e-33  Score=290.65  Aligned_cols=267  Identities=21%  Similarity=0.304  Sum_probs=200.4

Q ss_pred             EEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCC--CCeEEEEeCCCeEE
Q 042434          215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPD--DTKLLTCGNAEVLK  292 (517)
Q Consensus       215 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~--~~~l~s~~~dg~i~  292 (517)
                      +..+.+|.+.|++++|+|+|++|++|+.||.|+||++..+ .......+.+|.++|++++|+|+  +++|++|+.||.|+
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~-~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~   80 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE-THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL   80 (753)
T ss_dssp             ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETT-EEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred             eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCC-CCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence            4578899999999999999999999999999999999643 44667788999999999999988  99999999999999


Q ss_pred             EEECCCCc--EEEEeCCCCCceEEEEEeCC--CCeEEEeeCCCceeEEEEeCCCC--eeEeeeCcCCCceEEEEEccCCC
Q 042434          293 LWDVETGI--CKHTFGDHGFIVSSCAWFPD--SKRLVCGSSDTEKGIFMCDCDGN--EIKAWRGTRIPKVLDLAVTPDGE  366 (517)
Q Consensus       293 iwd~~~~~--~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~d~~v~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~  366 (517)
                      +||+.+++  ....+..|...|.+++|+|+  +..+++|+.||.  |.+||....  ........+...|.+++|+|...
T Consensus        81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~--I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~  158 (753)
T 3jro_A           81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK--VSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI  158 (753)
T ss_dssp             EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSE--EEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-
T ss_pred             EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCc--EEEEEeecCCCcceeEeecCCCceEEEEecCccc
Confidence            99999887  66777788999999999998  888888888888  666666543  11112222334566666666310


Q ss_pred             EEEEEeCCCcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC---ccceEEeCcccCceEEE
Q 042434          367 NLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKW---EKPFKYTGHSQNKYVIR  443 (517)
Q Consensus       367 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~---~~~~~~~~~~~~~~~i~  443 (517)
                      ..     +                      ......+++..+++++.||.|++||+++..   .....+.+|...   +.
T Consensus       159 ~~-----~----------------------~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~---V~  208 (753)
T 3jro_A          159 EE-----D----------------------GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW---VR  208 (753)
T ss_dssp             -----------------------------------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC---EE
T ss_pred             cc-----c----------------------cccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCc---EE
Confidence            00     0                      000012356777777777777777776542   223345556554   66


Q ss_pred             eecCCCC---CcEEEEecCCCcEEEEecCCCc-----eeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434          444 SCFGGLD---GTFIASGSENSQIYIWNRRNSK-----PIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS  515 (517)
Q Consensus       444 ~~~~s~~---~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~  515 (517)
                      ++.++|+   +.++++|+.||.|++||+.++.     .+....+|.+.|++++|+|++ .++++++.||.|++|++..+.
T Consensus       209 ~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg-~~l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          209 DVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG-NVLALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             EEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTT-CCEEEECSSSCEECCBCCSSS
T ss_pred             EEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCC-CEEEEEcCCCEEEEEecCCCC
Confidence            6677999   9999999999999999998874     334445688999999999999 799999999999999998543

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.6e-32  Score=264.78  Aligned_cols=250  Identities=14%  Similarity=0.192  Sum_probs=209.3

Q ss_pred             eEEEEeccCCCCEEEEEECCCC-CeEEEEeCCCeEEEEECCCCcEEEEeC--CCCCceEEEEEeC-CCCeEEEeeCCCce
Q 042434          258 TLKHTLRSHQNPVSFVAWSPDD-TKLLTCGNAEVLKLWDVETGICKHTFG--DHGFIVSSCAWFP-DSKRLVCGSSDTEK  333 (517)
Q Consensus       258 ~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~i~~~~-~~~~l~~~~~d~~v  333 (517)
                      .....+.+|...|.+++|+|++ ++|++|+.||.|++||+.+++....+.  +|...|.+++|+| ++.+|++++.|+. 
T Consensus        64 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~-  142 (383)
T 3ei3_B           64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGA-  142 (383)
T ss_dssp             EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTE-
T ss_pred             ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCE-
Confidence            4556778999999999999999 999999999999999999988877765  6999999999999 7899999999999 


Q ss_pred             eEEEEeCCCCeeEeeeCcC--CCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCC-EEE
Q 042434          334 GIFMCDCDGNEIKAWRGTR--IPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCK-NFI  409 (517)
Q Consensus       334 ~i~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~-~l~  409 (517)
                       |.+||..+.....+..+.  ...|.+++|+|+++++++++.|+.|++||++... .....+...+.+++|+|+++ .++
T Consensus       143 -i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~  221 (383)
T 3ei3_B          143 -TTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMA  221 (383)
T ss_dssp             -EEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEE
T ss_pred             -EEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEE
Confidence             888899887777666544  3579999999999999999999999999996554 55566888999999999999 899


Q ss_pred             EEeCCCeEEEEEcCCCC---ccceEEeCcccCceEEEeecCCC-CCcEEEEecCCCcEEEEecCCCceeEEecCCC----
Q 042434          410 VNLNSQEIHMWDVAGKW---EKPFKYTGHSQNKYVIRSCFGGL-DGTFIASGSENSQIYIWNRRNSKPIEILSGHS----  481 (517)
Q Consensus       410 ~~~~d~~i~~~d~~~~~---~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~----  481 (517)
                      +++.|+.|++||++...   .....+ +|...   +.++.|+| ++.+|++++.||.|++||+++++.+..+.+|.    
T Consensus       222 s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~---v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  297 (383)
T 3ei3_B          222 TSSVDATVKLWDLRNIKDKNSYIAEM-PHEKP---VNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQF  297 (383)
T ss_dssp             EEETTSEEEEEEGGGCCSTTCEEEEE-ECSSC---EEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCC
T ss_pred             EEeCCCEEEEEeCCCCCcccceEEEe-cCCCc---eEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccc
Confidence            99999999999997632   223333 45443   66677799 99999999999999999999988877776543    


Q ss_pred             -------------CCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434          482 -------------MTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSE  516 (517)
Q Consensus       482 -------------~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~  516 (517)
                                   +.+..++|+|++ .+  +++.||.|++||+.+++.
T Consensus       298 ~~~~~~~~~~~p~~~~~~~~~s~dg-~~--s~s~d~~i~iwd~~~~~~  342 (383)
T 3ei3_B          298 QHLTPIKATWHPMYDLIVAGRYPDD-QL--LLNDKRTIDIYDANSGGL  342 (383)
T ss_dssp             TTSCCCCCEECSSSSEEEEECBCCT-TT--CTTCCCCEEEEETTTCCE
T ss_pred             ccccceEEeccCCCCceEEEecCCc-cc--ccCCCCeEEEEecCCCce
Confidence                         334456777777 34  788999999999988764

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-33  Score=275.92  Aligned_cols=271  Identities=18%  Similarity=0.298  Sum_probs=212.6

Q ss_pred             EECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEe-ccCCCCEEEEEECC-CCCeEEEEeCCCeEEEEECCC---Cc---
Q 042434          229 QFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTL-RSHQNPVSFVAWSP-DDTKLLTCGNAEVLKLWDVET---GI---  300 (517)
Q Consensus       229 ~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~-~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~~---~~---  300 (517)
                      .|+|++..+++++      .|+.. +   ..+..+ .+|.+.|++++|+| ++++|++|+.||+|++||+.+   +.   
T Consensus        34 ~f~~~~~~~~~~~------~w~~~-g---~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~  103 (437)
T 3gre_A           34 EFGPIQEIVRSPN------MGNLR-G---KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYS  103 (437)
T ss_dssp             GGCCCCCCCCCCC------GGGCC-C---CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCS
T ss_pred             hcCCccccccccc------ccccc-c---eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccc
Confidence            3788888888765      37642 2   455667 88999999999999 999999999999999999876   43   


Q ss_pred             EEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEe--CCCCeeEeeeC--------c---CCCceEEEE--EccCC
Q 042434          301 CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCD--CDGNEIKAWRG--------T---RIPKVLDLA--VTPDG  365 (517)
Q Consensus       301 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~--~~~~~~~~~~~--------~---~~~~i~~~~--~~~~~  365 (517)
                      ....+ .|...|.+++|+|++.+|++++.||.+++|..+  ..+........        .   +...+.++.  +++++
T Consensus       104 ~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  182 (437)
T 3gre_A          104 SSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEK  182 (437)
T ss_dssp             CSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSC
T ss_pred             eeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCC
Confidence            23333 589999999999999999999999994444432  12333222211        1   334566666  66889


Q ss_pred             CEEEEEeCCCcEEEEECCCce--EEeec--cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEe-CcccCce
Q 042434          366 ENLISVLSDKDIRILNLGTYA--ERVIS--EEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYT-GHSQNKY  440 (517)
Q Consensus       366 ~~l~~~~~dg~i~i~d~~~~~--~~~~~--~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~~~~  440 (517)
                      ..+++++.||.|++||+++.+  .....  +...|.+++|+|+++++++++.||.|++||++.. .....+. .+...  
T Consensus       183 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~--  259 (437)
T 3gre_A          183 SLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN-VLIRSWSFGDHAP--  259 (437)
T ss_dssp             EEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT-EEEEEEBCTTCEE--
T ss_pred             CEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc-cEEEEEecCCCCc--
Confidence            999999999999999999877  23333  6789999999999999999999999999999875 5555543 44433  


Q ss_pred             EEEee----cCCCCCcEEEEecCCCcEEEEecCCCceeEEecC--------------------------CCCCeeEEEec
Q 042434          441 VIRSC----FGGLDGTFIASGSENSQIYIWNRRNSKPIEILSG--------------------------HSMTVNCVSWN  490 (517)
Q Consensus       441 ~i~~~----~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------------------------h~~~v~~v~~~  490 (517)
                       +.++    .+++++.+|++|+.||.|++||+.+++++..+.+                          |...|++++|+
T Consensus       260 -v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~  338 (437)
T 3gre_A          260 -ITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS  338 (437)
T ss_dssp             -EEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE
T ss_pred             -eEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC
Confidence             4444    6678899999999999999999999998877764                          44568888998


Q ss_pred             CCCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434          491 PKRPKMLASASDDHTIRIWGPCQSSE  516 (517)
Q Consensus       491 ~~~~~~l~s~~~dg~v~iw~~~~~~~  516 (517)
                       ++ .+|++|+.||.|++||+.+++.
T Consensus       339 -~~-~~l~s~~~d~~i~~wd~~~~~~  362 (437)
T 3gre_A          339 -ND-KILLTDEATSSIVMFSLNELSS  362 (437)
T ss_dssp             -TT-EEEEEEGGGTEEEEEETTCGGG
T ss_pred             -Cc-eEEEecCCCCeEEEEECCCccc
Confidence             56 6999999999999999988764

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-32  Score=256.35  Aligned_cols=282  Identities=17%  Similarity=0.155  Sum_probs=230.6

Q ss_pred             hccccccCCCCCccccccCCC-cccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEE
Q 042434          183 SQIDSCQYHNSSVAISLYEDH-CCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKH  261 (517)
Q Consensus       183 ~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~  261 (517)
                      ..+..+.++.....++...+. ...|+.........+..|.+.|.+++|+|++++|++|+.||.|++|++..........
T Consensus        19 ~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~   98 (313)
T 3odt_A           19 QDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLY   98 (313)
T ss_dssp             SCEEEEEEEETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-C
T ss_pred             CCcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCccc
Confidence            344455553333334444444 5566666677788899999999999999999999999999999999997665555667


Q ss_pred             EeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeC-CCCeEEEeeCCCceeEEEEeC
Q 042434          262 TLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFP-DSKRLVCGSSDTEKGIFMCDC  340 (517)
Q Consensus       262 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~d~~v~i~~~~~  340 (517)
                      .+.+|...|.+++|  +++++++++.||.|++||  .++....+..|...+.++.|+| ++..+++++.|+.  +.+|| 
T Consensus        99 ~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~--i~i~d-  171 (313)
T 3odt_A           99 TLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKT--IKLWQ-  171 (313)
T ss_dssp             EECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSC--EEEEE-
T ss_pred             chhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCC--EEEEe-
Confidence            78899999999999  578999999999999999  7788888889999999999998 8999999999999  77777 


Q ss_pred             CCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEE
Q 042434          341 DGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIH  418 (517)
Q Consensus       341 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~  418 (517)
                      .......+...+...+.+++|+|++. +++++.||.|++||+++++  .....+...+.+++|+|++ .+++++.||.|+
T Consensus       172 ~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~  249 (313)
T 3odt_A          172 NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVR  249 (313)
T ss_dssp             TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEE
T ss_pred             cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEE
Confidence            44555566665667899999999998 9999999999999999877  4455688899999999999 689999999999


Q ss_pred             EEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEec
Q 042434          419 MWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILS  478 (517)
Q Consensus       419 ~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  478 (517)
                      +||+.+. .....+..+...   +..+.++|+++ +++++.||.|++||+.+++.+....
T Consensus       250 iwd~~~~-~~~~~~~~~~~~---i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~~  304 (313)
T 3odt_A          250 IWSKENG-SLKQVITLPAIS---IWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASEDE  304 (313)
T ss_dssp             EECTTTC-CEEEEEECSSSC---EEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC---
T ss_pred             EEECCCC-ceeEEEeccCce---EEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehhh
Confidence            9999887 666677777654   56666799998 5678999999999999887665443

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.7e-32  Score=263.23  Aligned_cols=244  Identities=14%  Similarity=0.171  Sum_probs=208.1

Q ss_pred             eccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc--EEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeC
Q 042434          263 LRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI--CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDC  340 (517)
Q Consensus       263 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~  340 (517)
                      +..|..+|.+++|+|++++|++++.|+.|++||+.+++  .+..+..|...|.+++|+|++++|++++.||.  +.+|+.
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~--i~vwd~   81 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRN--AYVWTL   81 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSC--EEEEEE
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCe--EEEEEC
Confidence            34589999999999999999999999999999999987  88889899999999999999999999999999  666676


Q ss_pred             CCCeeE-e-eeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce------EEeeccCCCeeEEEEcCCCCEEEEEe
Q 042434          341 DGNEIK-A-WRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA------ERVISEEHPITSLSVSVDCKNFIVNL  412 (517)
Q Consensus       341 ~~~~~~-~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~i~~~~~s~~~~~l~~~~  412 (517)
                      ...... . ....+...+.+++|+|+++++++++.|+.|++||+....      .....+...+.+++|+|+++++++++
T Consensus        82 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  161 (372)
T 1k8k_C           82 KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS  161 (372)
T ss_dssp             ETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE
T ss_pred             CCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEc
Confidence            554422 2 223445689999999999999999999999999998764      12234678899999999999999999


Q ss_pred             CCCeEEEEEcCC-----------------CCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeE
Q 042434          413 NSQEIHMWDVAG-----------------KWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIE  475 (517)
Q Consensus       413 ~d~~i~~~d~~~-----------------~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  475 (517)
                      .|+.|++||++.                 .......+.+|...   +..+.++|++++|++++.||.|++||+.+++++.
T Consensus       162 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  238 (372)
T 1k8k_C          162 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGW---VHGVCFSANGSRVAWVSHDSTVCLADADKKMAVA  238 (372)
T ss_dssp             TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSC---EEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEE
T ss_pred             CCCCEEEEEcccccccccccccccccccchhhheEecCCCCCe---EEEEEECCCCCEEEEEeCCCEEEEEECCCCceeE
Confidence            999999999642                 11444455555554   5666779999999999999999999999999999


Q ss_pred             EecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434          476 ILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ  513 (517)
Q Consensus       476 ~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~  513 (517)
                      .+..|...|.+++|+|++ .+++++ .||.|++|++.+
T Consensus       239 ~~~~~~~~v~~~~~~~~~-~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          239 TLASETLPLLAVTFITES-SLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             EEECSSCCEEEEEEEETT-EEEEEE-TTSSCEEEEEET
T ss_pred             EEccCCCCeEEEEEecCC-CEEEEE-eCCeEEEEEccC
Confidence            999999999999999999 677766 999999999876

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.1e-33  Score=272.39  Aligned_cols=242  Identities=13%  Similarity=0.142  Sum_probs=196.1

Q ss_pred             eccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCC--cEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeC
Q 042434          263 LRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETG--ICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDC  340 (517)
Q Consensus       263 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~  340 (517)
                      +..+.++|++++|+|++++|++|+.||.|++||+.++  +.+..+..|...|.+++|+|++++|++++.|+.  |.+|+.
T Consensus         7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~--v~vwd~   84 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRN--AYVYEK   84 (377)
T ss_dssp             EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSS--EEEC--
T ss_pred             EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCe--EEEEEc
Confidence            3446789999999999999999999999999999988  777888899999999999999999999999999  777777


Q ss_pred             CCCe---eEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-----EEeec-cCCCeeEEEEcCCCCEEEEE
Q 042434          341 DGNE---IKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-----ERVIS-EEHPITSLSVSVDCKNFIVN  411 (517)
Q Consensus       341 ~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~-~~~~i~~~~~s~~~~~l~~~  411 (517)
                      ....   .......+...|.+++|+|+++.+++++.|+.|++||+++..     ..... +...+.+++|+|++++++++
T Consensus        85 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~  164 (377)
T 3dwl_C           85 RPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAG  164 (377)
T ss_dssp             ----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEE
T ss_pred             CCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEE
Confidence            6543   222233345689999999999999999999999999998764     33334 78899999999999999999


Q ss_pred             eCCCeEEEEEcCCCC-----------------ccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCce-
Q 042434          412 LNSQEIHMWDVAGKW-----------------EKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKP-  473 (517)
Q Consensus       412 ~~d~~i~~~d~~~~~-----------------~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-  473 (517)
                      +.|+.|++||+....                 .....+ +|...   +.++.|+|++++|++++.||.|++||+.+++. 
T Consensus       165 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~  240 (377)
T 3dwl_C          165 CADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGW---VHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQP  240 (377)
T ss_dssp             ESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSS---EEEEEECTTSSCEEEEETTTEEC-CEECSTTSC
T ss_pred             eCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCce---EEEEEECCCCCEEEEEeCCCcEEEEECCCCCCc
Confidence            999999999985321                 122223 44444   66677799999999999999999999999987 


Q ss_pred             ---eEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCC
Q 042434          474 ---IEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPC  512 (517)
Q Consensus       474 ---~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~  512 (517)
                         +..+.+|...|.+++|+|++ .+|++++.|+.+ +|+..
T Consensus       241 ~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          241 PRALITVKLSQLPLRSLLWANES-AIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             EEECCCEECSSSCEEEEEEEETT-EEEEEESSSSEE-EECCC
T ss_pred             ceeeEeecCCCCceEEEEEcCCC-CEEEEEcCCcEE-EEEeC
Confidence               88889999999999999999 788888877766 66654

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.1e-32  Score=263.06  Aligned_cols=284  Identities=11%  Similarity=0.093  Sum_probs=221.8

Q ss_pred             HhccccccCCCCCc-c-cccc----CCCcccccCCCcccEEE-eccccCcEEEEEECCC---CCEEEEeeCCCcEEEEEe
Q 042434          182 TSQIDSCQYHNSSV-A-ISLY----EDHCCGRDQIPTETVQI-LTEHKNEVWFVQFSNN---GEYLASSSSDCSAIIWKV  251 (517)
Q Consensus       182 ~~q~~~~~~~~~~~-~-~~~~----~~~~~~~~~~~~~~~~~-l~~h~~~v~~~~~s~~---~~~l~t~~~dg~i~iw~~  251 (517)
                      ...+..+.+++... . +...    +.....|+....+.... ..+|.+.|++++|+|+   |++|++|+.||.|++||+
T Consensus        18 ~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~   97 (357)
T 3i2n_A           18 NYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNL   97 (357)
T ss_dssp             SSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECT
T ss_pred             CCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeC
Confidence            44566777877654 2 2222    33344455444444433 3379999999999998   799999999999999999


Q ss_pred             cCCCeeeEEEEeccCCCCEEEEE------ECCCCCeEEEEeCCCeEEEEECCCCc-EEEEeCCCCC----ceEEEE----
Q 042434          252 LEDSKLTLKHTLRSHQNPVSFVA------WSPDDTKLLTCGNAEVLKLWDVETGI-CKHTFGDHGF----IVSSCA----  316 (517)
Q Consensus       252 ~~~~~~~~~~~~~~h~~~v~~l~------~s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~----~v~~i~----  316 (517)
                      .++.  .....+.+|...|.+++      |+|++++|++++.||.|++||+.+++ .+..+..+..    .+.+++    
T Consensus        98 ~~~~--~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  175 (357)
T 3i2n_A           98 EAPE--MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNA  175 (357)
T ss_dssp             TSCS--SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECC
T ss_pred             CCCC--ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEec
Confidence            7664  13467789999999995      57899999999999999999999887 6777765544    889998    


Q ss_pred             EeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEcc---CCCEEEEEeCCCcEEEEECCCce--EEe--
Q 042434          317 WFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTP---DGENLISVLSDKDIRILNLGTYA--ERV--  389 (517)
Q Consensus       317 ~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~--~~~--  389 (517)
                      |+|+++++++++.|+.  |.+||........... +...+.+++|+|   ++..+++++.||.|++||+++..  ...  
T Consensus       176 ~~~~~~~l~~~~~d~~--i~i~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  252 (357)
T 3i2n_A          176 YNQEERVVCAGYDNGD--IKLFDLRNMALRWETN-IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFAS  252 (357)
T ss_dssp             CC-CCCEEEEEETTSE--EEEEETTTTEEEEEEE-CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEE
T ss_pred             cCCCCCEEEEEccCCe--EEEEECccCceeeecC-CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceee
Confidence            7889999999999999  8899998776644443 345899999999   99999999999999999998765  112  


Q ss_pred             ---eccCCCeeEEEEcCCCC-EEEEEeCCCeEEEEEcCCCCc------------------cceEEeCcccCceEEEeecC
Q 042434          390 ---ISEEHPITSLSVSVDCK-NFIVNLNSQEIHMWDVAGKWE------------------KPFKYTGHSQNKYVIRSCFG  447 (517)
Q Consensus       390 ---~~~~~~i~~~~~s~~~~-~l~~~~~d~~i~~~d~~~~~~------------------~~~~~~~~~~~~~~i~~~~~  447 (517)
                         ..+...+.+++|+|+++ ++++++.||.|++||++....                  ....+.+|...   +..+.|
T Consensus       253 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---v~~~~~  329 (357)
T 3i2n_A          253 VSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQP---ISSLDW  329 (357)
T ss_dssp             EEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSC---EEEEEE
T ss_pred             eccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCC---eeEEEE
Confidence               26888999999999998 899999999999999975422                  34445566554   666777


Q ss_pred             CCCCcEEE-EecCCCcEEEEecCCCce
Q 042434          448 GLDGTFIA-SGSENSQIYIWNRRNSKP  473 (517)
Q Consensus       448 s~~~~~l~-~~~~dg~i~iwd~~~~~~  473 (517)
                      +|++++|+ +++.||.|++||+.+.+.
T Consensus       330 s~~~~~l~~s~~~d~~i~iw~~~~~~~  356 (357)
T 3i2n_A          330 SPDKRGLCVCSSFDQTVRVLIVTKLNK  356 (357)
T ss_dssp             CSSSTTEEEEEETTSEEEEEEECC---
T ss_pred             cCCCCeEEEEecCCCcEEEEECCCccc
Confidence            99999998 899999999999987654

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=2e-32  Score=269.74  Aligned_cols=245  Identities=13%  Similarity=0.222  Sum_probs=200.1

Q ss_pred             CCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc-----------EEEEeCCCC------------CceEEEEEeCCC-
Q 042434          266 HQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI-----------CKHTFGDHG------------FIVSSCAWFPDS-  321 (517)
Q Consensus       266 h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-----------~~~~~~~~~------------~~v~~i~~~~~~-  321 (517)
                      |.+.|++++|+|++++||+|+.||.|++||+.+++           ....+.+|.            ..|.+++|+|++ 
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~  106 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN  106 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence            57899999999999999999999999999999877           577888998            889999999998 


Q ss_pred             -CeEEEeeCCCceeEEEEeCCCCee----------------------------------------EeeeCcCCCceEEEE
Q 042434          322 -KRLVCGSSDTEKGIFMCDCDGNEI----------------------------------------KAWRGTRIPKVLDLA  360 (517)
Q Consensus       322 -~~l~~~~~d~~v~i~~~~~~~~~~----------------------------------------~~~~~~~~~~i~~~~  360 (517)
                       ..|++++.|+.  |.+|+......                                        ..+...+...|.+++
T Consensus       107 ~~~l~s~s~d~~--i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  184 (447)
T 3dw8_B          107 AAQFLLSTNDKT--IKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS  184 (447)
T ss_dssp             SSEEEEEECSSC--EEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred             cceEEEeCCCCe--EEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence             79999999999  55555443111                                        122345667899999


Q ss_pred             EccCCCEEEEEeCCCcEEEEECCCce--EE--------eeccCCCeeEEEEcCCC-CEEEEEeCCCeEEEEEcCCCCcc-
Q 042434          361 VTPDGENLISVLSDKDIRILNLGTYA--ER--------VISEEHPITSLSVSVDC-KNFIVNLNSQEIHMWDVAGKWEK-  428 (517)
Q Consensus       361 ~~~~~~~l~~~~~dg~i~i~d~~~~~--~~--------~~~~~~~i~~~~~s~~~-~~l~~~~~d~~i~~~d~~~~~~~-  428 (517)
                      |+|++++++++ .|+.|++||+++..  ..        ...+...+.+++|+|++ ..+++++.||.|++||+++.... 
T Consensus       185 ~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~  263 (447)
T 3dw8_B          185 INSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD  263 (447)
T ss_dssp             ECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred             EcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence            99999999998 89999999998543  22        33678889999999998 99999999999999999876321 


Q ss_pred             --ceEEeCcccC---------ceEEEeecCCCCCcEEEEecCCCcEEEEecCC-CceeEEecCCCCC-------------
Q 042434          429 --PFKYTGHSQN---------KYVIRSCFGGLDGTFIASGSENSQIYIWNRRN-SKPIEILSGHSMT-------------  483 (517)
Q Consensus       429 --~~~~~~~~~~---------~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~h~~~-------------  483 (517)
                        ...+.++...         ...+.++.|+|+|++|++++. |.|++||+++ ++++..+.+|...             
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i  342 (447)
T 3dw8_B          264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCI  342 (447)
T ss_dssp             TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGG
T ss_pred             ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccccc
Confidence              4566665531         013667777999999999999 9999999997 8899999888642             


Q ss_pred             --eeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434          484 --VNCVSWNPKRPKMLASASDDHTIRIWGPCQSS  515 (517)
Q Consensus       484 --v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~  515 (517)
                        +..++|+|++ .+|++|+.||.|++||+.+++
T Consensus       343 ~~~~~~~~s~~~-~~l~s~s~dg~v~iwd~~~~~  375 (447)
T 3dw8_B          343 FDKFECCWNGSD-SVVMTGSYNNFFRMFDRNTKR  375 (447)
T ss_dssp             GCCCCEEECTTS-SEEEEECSTTEEEEEETTTCC
T ss_pred             ccceEEEECCCC-CEEEEeccCCEEEEEEcCCCc
Confidence              2349999999 789999999999999998875

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=7.2e-32  Score=262.23  Aligned_cols=321  Identities=18%  Similarity=0.212  Sum_probs=214.4

Q ss_pred             HhccccccCCC-CCc-cccccCCC-cccccCCCcccEEEe-------------ccccCcEEEEEECC-CCCEEEEeeCCC
Q 042434          182 TSQIDSCQYHN-SSV-AISLYEDH-CCGRDQIPTETVQIL-------------TEHKNEVWFVQFSN-NGEYLASSSSDC  244 (517)
Q Consensus       182 ~~q~~~~~~~~-~~~-~~~~~~~~-~~~~~~~~~~~~~~l-------------~~h~~~v~~~~~s~-~~~~l~t~~~dg  244 (517)
                      ...+.++.+++ ... .++...++ ...|+.........+             .+|.+.|++++|+| ++.+|++++.||
T Consensus        43 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~  122 (408)
T 4a11_B           43 GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDK  122 (408)
T ss_dssp             SSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTS
T ss_pred             CCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCC
Confidence            45566777776 444 33444444 445554443333332             36999999999999 788999999999


Q ss_pred             cEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCC---CeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCC
Q 042434          245 SAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDD---TKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDS  321 (517)
Q Consensus       245 ~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~  321 (517)
                      .|++||+.++.   ....+. +...+.++.|+|.+   .++++++.||.|++||+.+++.+..+..|...|.+++|+|++
T Consensus       123 ~i~iwd~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~  198 (408)
T 4a11_B          123 TLKVWDTNTLQ---TADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRY  198 (408)
T ss_dssp             EEEEEETTTTE---EEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSC
T ss_pred             eEEEeeCCCCc---cceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCC
Confidence            99999997653   333333 78889999999854   599999999999999999999999999999999999999999


Q ss_pred             C-eEEEeeCCCceeEEEEeCCCC--eeEeee--------------CcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCC
Q 042434          322 K-RLVCGSSDTEKGIFMCDCDGN--EIKAWR--------------GTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGT  384 (517)
Q Consensus       322 ~-~l~~~~~d~~v~i~~~~~~~~--~~~~~~--------------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  384 (517)
                      . .+++++.||.  |.+||....  ....+.              ..+...|.+++|+|+++++++++.||.|++||+.+
T Consensus       199 ~~ll~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~  276 (408)
T 4a11_B          199 DYILATASADSR--VKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSN  276 (408)
T ss_dssp             TTEEEEEETTSC--EEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             CcEEEEEcCCCc--EEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCC
Confidence            8 4889999999  778887643  222221              24456899999999999999999999999999988


Q ss_pred             ceEEeec-------cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEe
Q 042434          385 YAERVIS-------EEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASG  457 (517)
Q Consensus       385 ~~~~~~~-------~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  457 (517)
                      .......       ....+........+..+++++.++.|++||+.+. .....+.+|...   +.++.++|++++|++|
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~~---v~~~~~s~~~~~l~s~  352 (408)
T 4a11_B          277 GENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG-EQITMLKGHYKT---VDCCVFQSNFQELYSG  352 (408)
T ss_dssp             CCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTC-CEEEEECCCSSC---EEEEEEETTTTEEEEE
T ss_pred             CccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCC-cceeeeccCCCe---EEEEEEcCCCCEEEEE
Confidence            7622111       1112222233344567778888999999999887 677778777765   5566779999999999


Q ss_pred             cCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434          458 SENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS  515 (517)
Q Consensus       458 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~  515 (517)
                      +.||.|++||+.+++++.....+.   ....+.|.....+.+++.|+.+++|+...-+
T Consensus       353 ~~dg~i~iw~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~  407 (408)
T 4a11_B          353 SRDCNILAWVPSLYEPVPDDDETT---TKSQLNPAFEDAWSSSDEEGGTSAWSHPQFE  407 (408)
T ss_dssp             ETTSCEEEEEECC---------------------------------------------
T ss_pred             CCCCeEEEEeCCCCCccCCCCceE---eccccccccceeecccCccCceeecCCcccC
Confidence            999999999999998876655332   2234444443567788899999999876543

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=1.5e-31  Score=254.56  Aligned_cols=281  Identities=12%  Similarity=0.075  Sum_probs=207.8

Q ss_pred             cccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeE-EEEeCCCe
Q 042434          212 TETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKL-LTCGNAEV  290 (517)
Q Consensus       212 ~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l-~s~~~dg~  290 (517)
                      .+++..+.+|.+.|++++|+|||++||+|+.+| ++||+..+.   ......  +...+..+++.++++.+ ++++.|++
T Consensus         9 ~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~   82 (355)
T 3vu4_A            9 RNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPV---AHIMSQ--EMRHLSKVRMLHRTNYVAFVTGVKEV   82 (355)
T ss_dssp             ----------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTE---EEEEEE--ECSCCCEEEECTTSSEEEEECSSTTE
T ss_pred             cCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCc---ceeeee--ecCCeEEEEEcCCCCEEEEEECCccE
Confidence            345566788999999999999999999998775 789998643   222222  22357888999988887 56778899


Q ss_pred             EEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCC--eeEeeeCcCCCceEEEEEccCCCEE
Q 042434          291 LKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGN--EIKAWRGTRIPKVLDLAVTPDGENL  368 (517)
Q Consensus       291 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l  368 (517)
                      |++||+.+++++..+. +...|.++.|+++.  ++++ .++.  +++|+....  .+..+..    ....+++++  ..+
T Consensus        83 v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~--i~i~d~~~~~~~~~~~~~----~~~~~~~s~--~~l  150 (355)
T 3vu4_A           83 VHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDV--ISVFKFGNPWKRITDDIR----FGGVCEFSN--GLL  150 (355)
T ss_dssp             EEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTE--EEEEESSTTCCBSSCCEE----EEEEEEEET--TEE
T ss_pred             EEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCE--EEEEECCCCceeeEEecc----CCceEEEEc--cEE
Confidence            9999999999998885 66789999998764  4444 3666  888888754  3333332    344556666  566


Q ss_pred             EE--EeCCCcEEEEECCCce------------------EEeeccCCCeeEEEEcCCCCEEEEEeCCCe-EEEEEcCCCCc
Q 042434          369 IS--VLSDKDIRILNLGTYA------------------ERVISEEHPITSLSVSVDCKNFIVNLNSQE-IHMWDVAGKWE  427 (517)
Q Consensus       369 ~~--~~~dg~i~i~d~~~~~------------------~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~-i~~~d~~~~~~  427 (517)
                      ++  |+.+|.|++||+.+..                  .....|...|.+++|+|+++++++++.|++ |++||++++ .
T Consensus       151 a~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~-~  229 (355)
T 3vu4_A          151 VYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG-V  229 (355)
T ss_dssp             EEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC-C
T ss_pred             EEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC-c
Confidence            65  6889999999998743                  445678889999999999999999999998 999999887 5


Q ss_pred             cceEEe-C-cccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCce--eEEec---------------------CCCC
Q 042434          428 KPFKYT-G-HSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKP--IEILS---------------------GHSM  482 (517)
Q Consensus       428 ~~~~~~-~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~---------------------~h~~  482 (517)
                      ....+. + |...   +.++.|+|+|++|++++.|++|++||+..+..  ...+.                     .+..
T Consensus       230 ~~~~~~~g~h~~~---v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (355)
T 3vu4_A          230 LVREFRRGLDRAD---VVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHV  306 (355)
T ss_dssp             EEEEEECTTCCSC---EEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTC
T ss_pred             EEEEEEcCCCCCc---EEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCC
Confidence            666666 4 6654   66777799999999999999999999976531  11111                     1122


Q ss_pred             CeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434          483 TVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS  515 (517)
Q Consensus       483 ~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~  515 (517)
                      ....++|++++ ..+++++.||.+++|++..++
T Consensus       307 ~~~~~a~~~d~-~~l~~~~~dg~~~~~~~~~~~  338 (355)
T 3vu4_A          307 RGCKIAWISES-SLVVVWPHTRMIETFKVVFDD  338 (355)
T ss_dssp             CCCEEEESSSS-EEEEEETTTTEEEEEEEEEET
T ss_pred             CceEEEEeCCC-CEEEEEeCCCeEEEEEEEcCC
Confidence            34779999999 799999999999999986544

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=2.7e-32  Score=264.84  Aligned_cols=256  Identities=17%  Similarity=0.253  Sum_probs=210.1

Q ss_pred             ccEEEeccccCcEEEEEECC-CCCEEEEeeCCCcEEEEEecCCCee----eEEEEeccCCCCEEEEEECCCC-CeEEEEe
Q 042434          213 ETVQILTEHKNEVWFVQFSN-NGEYLASSSSDCSAIIWKVLEDSKL----TLKHTLRSHQNPVSFVAWSPDD-TKLLTCG  286 (517)
Q Consensus       213 ~~~~~l~~h~~~v~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~~----~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~  286 (517)
                      .....+.+|.+.|++++|+| ++++|++|+.||.|+||++.++...    .....+.+|...|.+++|+|++ ++|++++
T Consensus        72 ~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~  151 (402)
T 2aq5_A           72 KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAG  151 (402)
T ss_dssp             TTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEE
T ss_pred             CCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEc
Confidence            35667889999999999999 9999999999999999999765311    3346778999999999999998 6999999


Q ss_pred             CCCeEEEEECCCCcEEEEe--CCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCee-Eee-eCcCCCceEEEEEc
Q 042434          287 NAEVLKLWDVETGICKHTF--GDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEI-KAW-RGTRIPKVLDLAVT  362 (517)
Q Consensus       287 ~dg~i~iwd~~~~~~~~~~--~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~-~~~-~~~~~~~i~~~~~~  362 (517)
                      .||.|++||+.+++.+..+  ..|...|.+++|+|++++|++++.|+.  |.+||...... ..+ ..+....+.++.|+
T Consensus       152 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  229 (402)
T 2aq5_A          152 CDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKR--VRVIEPRKGTVVAEKDRPHEGTRPVHAVFV  229 (402)
T ss_dssp             TTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSE--EEEEETTTTEEEEEEECSSCSSSCCEEEEC
T ss_pred             CCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCc--EEEEeCCCCceeeeeccCCCCCcceEEEEc
Confidence            9999999999999999999  789999999999999999999999999  88899875444 444 34443358999999


Q ss_pred             cCCCEEEEE---eCCCcEEEEECCCce----EEeeccCCCeeEEEEcCCCCEEEE-EeCCCeEEEEEcCCCCccceEEeC
Q 042434          363 PDGENLISV---LSDKDIRILNLGTYA----ERVISEEHPITSLSVSVDCKNFIV-NLNSQEIHMWDVAGKWEKPFKYTG  434 (517)
Q Consensus       363 ~~~~~l~~~---~~dg~i~i~d~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~-~~~d~~i~~~d~~~~~~~~~~~~~  434 (517)
                      |++.++++|   +.|+.|++||+++..    .....+...+.+++|+|+++++++ ++.|+.|++||+.+.......+..
T Consensus       230 ~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~  309 (402)
T 2aq5_A          230 SEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSM  309 (402)
T ss_dssp             STTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEE
T ss_pred             CCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecc
Confidence            999999999   799999999998855    233456778999999999999975 457999999999876433444544


Q ss_pred             cccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCce
Q 042434          435 HSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKP  473 (517)
Q Consensus       435 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  473 (517)
                      +.. ...+..+.|+|++.++++  .++.+++|++.++..
T Consensus       310 ~~~-~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~  345 (402)
T 2aq5_A          310 FSS-KESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC  345 (402)
T ss_dssp             ECC-SSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred             ccc-CCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence            431 123556667999998765  466999999988753

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=5.1e-31  Score=258.59  Aligned_cols=290  Identities=12%  Similarity=0.119  Sum_probs=231.1

Q ss_pred             ccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEE--EeccCCCCEEEEEECCCCCeEEEEeCCCe
Q 042434          213 ETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKH--TLRSHQNPVSFVAWSPDDTKLLTCGNAEV  290 (517)
Q Consensus       213 ~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~--~~~~h~~~v~~l~~s~~~~~l~s~~~dg~  290 (517)
                      +.+..+..+ ..+.+++|+|++.++++++.|+.|++||..++.......  .+.+|...|.+++|+|++.++++++.|+.
T Consensus       114 ~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~  192 (433)
T 3bws_A          114 RFISRFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANA  192 (433)
T ss_dssp             EEEEEEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTE
T ss_pred             eEEEEEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCE
Confidence            445555544 445699999988888888889999999997664331111  34578899999999999999999999999


Q ss_pred             EEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEee-CCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEE
Q 042434          291 LKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGS-SDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLI  369 (517)
Q Consensus       291 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  369 (517)
                      |++||+.+++.+..+..|...+.+++|+|+++.+++++ .++.  |+.||..+.........+ ..+.+++|+|+++.++
T Consensus       193 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~  269 (433)
T 3bws_A          193 VHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISED--ISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELY  269 (433)
T ss_dssp             EEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTE--EEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEE
T ss_pred             EEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCc--EEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEE
Confidence            99999999999999988999999999999999886554 7888  889998765543333332 3699999999999999


Q ss_pred             EEe--------CCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEE-EEEeCCCeEEEEEcCCCCccceEEeCcccCc
Q 042434          370 SVL--------SDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNF-IVNLNSQEIHMWDVAGKWEKPFKYTGHSQNK  439 (517)
Q Consensus       370 ~~~--------~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~  439 (517)
                      +++        .|+.|++||+.+++ .....+...+..++|+|+++.+ ++++.++.|++||+.+. .....+. +... 
T Consensus       270 ~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~-~~~~~~~-~~~~-  346 (433)
T 3bws_A          270 IAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK-KVQKSIP-VFDK-  346 (433)
T ss_dssp             EEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT-EEEEEEE-CSSS-
T ss_pred             EEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC-cEEEEec-CCCC-
Confidence            888        48899999999877 4444555688999999999865 55588999999999865 4444443 2222 


Q ss_pred             eEEEeecCCCCCcEEEEecC---------------CCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEee-CC
Q 042434          440 YVIRSCFGGLDGTFIASGSE---------------NSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS-DD  503 (517)
Q Consensus       440 ~~i~~~~~s~~~~~l~~~~~---------------dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~-~d  503 (517)
                        +..+.++|+|+++++++.               ||.|++||+.+++.+..+.. ...+.+++|+|++ ..|++++ .|
T Consensus       347 --~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg-~~l~~~~~~d  422 (433)
T 3bws_A          347 --PNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDN-RYLVISDFLD  422 (433)
T ss_dssp             --EEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTS-CEEEEEETTT
T ss_pred             --CCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCC-CEEEEEECCC
Confidence              456667999998888876               57999999999999988876 4679999999999 5666665 59


Q ss_pred             CcEEEeCCCC
Q 042434          504 HTIRIWGPCQ  513 (517)
Q Consensus       504 g~v~iw~~~~  513 (517)
                      +.|++|+++.
T Consensus       423 ~~i~v~~~~~  432 (433)
T 3bws_A          423 HQIRVYRRDG  432 (433)
T ss_dssp             TEEEEEEETT
T ss_pred             CeEEEEEecC
Confidence            9999999863

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=6.1e-32  Score=256.31  Aligned_cols=247  Identities=14%  Similarity=0.171  Sum_probs=208.7

Q ss_pred             EEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc---EEEEeCCCCCceEEEEEeCCCC-eEEEeeCCCceeEE
Q 042434          261 HTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI---CKHTFGDHGFIVSSCAWFPDSK-RLVCGSSDTEKGIF  336 (517)
Q Consensus       261 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~d~~v~i~  336 (517)
                      ....+|.+.|.+++|+|++++|++++.||.|++|++.++.   ....+..|...|.+++|+|+++ ++++|+.||.  |.
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~   82 (342)
T 1yfq_A            5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGE--IL   82 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSC--EE
T ss_pred             ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCe--EE
Confidence            3446799999999999999999999999999999998887   3444558999999999999999 9999999999  88


Q ss_pred             EEeC-CCCeeEeeeCc-CCCceEEEEEccCCCEEEEEeCCCcEEEEECCC---------ce-EEeeccCCCeeEEEEcCC
Q 042434          337 MCDC-DGNEIKAWRGT-RIPKVLDLAVTPDGENLISVLSDKDIRILNLGT---------YA-ERVISEEHPITSLSVSVD  404 (517)
Q Consensus       337 ~~~~-~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~---------~~-~~~~~~~~~i~~~~~s~~  404 (517)
                      +|+. .+.....+... +...|.+++|+| +..+++++.|+.|++||+++         .+ .....+...+.+++|+|+
T Consensus        83 ~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  161 (342)
T 1yfq_A           83 KVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS  161 (342)
T ss_dssp             EECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS
T ss_pred             EEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCC
Confidence            8998 77766665551 446899999999 99999999999999999987         54 334457889999999998


Q ss_pred             CCEEEEEeCCCeEEEEEcCC-CCccce-EEeCcccCceEEEeecCCC-CCcEEEEecCCCcEEEEecCCC------ceeE
Q 042434          405 CKNFIVNLNSQEIHMWDVAG-KWEKPF-KYTGHSQNKYVIRSCFGGL-DGTFIASGSENSQIYIWNRRNS------KPIE  475 (517)
Q Consensus       405 ~~~l~~~~~d~~i~~~d~~~-~~~~~~-~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~------~~~~  475 (517)
                      +  +++++.++.|++||++. ...... ....+...   +.++.++| +++++++++.||.|++|++...      +...
T Consensus       162 ~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~---i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~  236 (342)
T 1yfq_A          162 R--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQ---IRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF  236 (342)
T ss_dssp             E--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSC---EEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCE
T ss_pred             c--EEEEeCCCeEEEEECCccccccceeeecCCCCc---eeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccce
Confidence            7  99999999999999987 422222 22333333   56677799 9999999999999999999887      8888


Q ss_pred             EecCCCC---------CeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434          476 ILSGHSM---------TVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSE  516 (517)
Q Consensus       476 ~~~~h~~---------~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~  516 (517)
                      .+.+|..         .|++++|+|++ .+|++++.||.|++||+.+++.
T Consensus       237 ~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~  285 (342)
T 1yfq_A          237 AFRCHRLNLKDTNLAYPVNSIEFSPRH-KFLYTAGSDGIISCWNLQTRKK  285 (342)
T ss_dssp             EEECCCCCTTCCSSCCCEEEEEECTTT-CCEEEEETTSCEEEEETTTTEE
T ss_pred             eeecccccccccccceeEEEEEEcCCC-CEEEEecCCceEEEEcCccHhH
Confidence            8888865         99999999999 7899999999999999987753

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=7.1e-32  Score=264.52  Aligned_cols=249  Identities=13%  Similarity=0.206  Sum_probs=199.1

Q ss_pred             EeccCCCCEEEEEECC-CCCeEEEEeCCCeEEEEECCCCcE--EEEeCCCCCceEEEEEeC-CCCeEEEeeCCCceeEEE
Q 042434          262 TLRSHQNPVSFVAWSP-DDTKLLTCGNAEVLKLWDVETGIC--KHTFGDHGFIVSSCAWFP-DSKRLVCGSSDTEKGIFM  337 (517)
Q Consensus       262 ~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~i~~~~-~~~~l~~~~~d~~v~i~~  337 (517)
                      ...+|...|++++|+| ++++||+|+.||+|+|||+.+++.  ...+.+|...|++++|+| ++.+|++|+.||+  |.+
T Consensus       114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~--v~i  191 (435)
T 4e54_B          114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGT--TRL  191 (435)
T ss_dssp             EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSC--EEE
T ss_pred             cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCE--EEE
Confidence            3456889999999999 567999999999999999987754  445568999999999998 6889999999999  888


Q ss_pred             EeCCCCeeEeeeCcCC--CceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCC-EEEEEeC
Q 042434          338 CDCDGNEIKAWRGTRI--PKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCK-NFIVNLN  413 (517)
Q Consensus       338 ~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~-~l~~~~~  413 (517)
                      ||..+.....+...+.  ..+.+++|+|++.++++|+.||.|++||++... .....|...|.+++|+|++. .+++++.
T Consensus       192 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~  271 (435)
T 4e54_B          192 QDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASV  271 (435)
T ss_dssp             EETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEET
T ss_pred             eeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecC
Confidence            8988877766655442  357889999999999999999999999998765 45556888999999999886 6778899


Q ss_pred             CCeEEEEEcCCCCccc--eEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCC------Cee
Q 042434          414 SQEIHMWDVAGKWEKP--FKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSM------TVN  485 (517)
Q Consensus       414 d~~i~~~d~~~~~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~------~v~  485 (517)
                      |+.|++||++......  ....+|...   +.++.|+|+|.+|++++.||.|++||+.++.....+..|..      .+.
T Consensus       272 d~~v~iwd~~~~~~~~~~~~~~~h~~~---v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  348 (435)
T 4e54_B          272 DQTVKIWDLRQVRGKASFLYSLPHRHP---VNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPI  348 (435)
T ss_dssp             TSBCCEEETTTCCSSSCCSBCCBCSSC---EEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCC
T ss_pred             cceeeEEecccccccceEEEeeecccc---ccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeE
Confidence            9999999997652221  222344443   77788899999999999999999999999988887766643      234


Q ss_pred             EEEecCCCCcEEEEee------------CCCcEEEeCCCCCCC
Q 042434          486 CVSWNPKRPKMLASAS------------DDHTIRIWGPCQSSE  516 (517)
Q Consensus       486 ~v~~~~~~~~~l~s~~------------~dg~v~iw~~~~~~~  516 (517)
                      ...|+|++ .++++++            .++.|++||..+++.
T Consensus       349 ~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~  390 (435)
T 4e54_B          349 KAAWHPRY-NLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKM  390 (435)
T ss_dssp             BCEECSSS-SCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCE
T ss_pred             EEEEcCCC-CEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcE
Confidence            55677776 3444443            346799999988753

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.8e-33  Score=268.21  Aligned_cols=244  Identities=11%  Similarity=0.189  Sum_probs=202.4

Q ss_pred             cccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCC-----CEEEEEECCCCCeEEEEeCCCeEEEE
Q 042434          220 EHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQN-----PVSFVAWSPDDTKLLTCGNAEVLKLW  294 (517)
Q Consensus       220 ~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~-----~v~~l~~s~~~~~l~s~~~dg~i~iw  294 (517)
                      +|...|++++|||+|++||+++.||.|++|+...     ....+. |..     .|.+++|||||++||+|+.||+|++|
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-----~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIW  156 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-----MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFF  156 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-----EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-----eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEE
Confidence            5689999999999999999999999999999532     445566 665     49999999999999999999999999


Q ss_pred             ECCCCc-------EEEEe----CCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCee----EeeeCcCCCceEEE
Q 042434          295 DVETGI-------CKHTF----GDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEI----KAWRGTRIPKVLDL  359 (517)
Q Consensus       295 d~~~~~-------~~~~~----~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~----~~~~~~~~~~i~~~  359 (517)
                      |+.++.       .+.++    .+|...|.+++|+|+|  +++++.|+.  +++|+..++..    ..+...+...|.++
T Consensus       157 d~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~t--VrlWd~~~~~~~~~~~tL~~~h~~~V~sv  232 (588)
T 2j04_A          157 SIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNS--VFSMTVSASSHQPVSRMIQNASRRKITDL  232 (588)
T ss_dssp             ECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCC--EEEECCCSSSSCCCEEEEECCCSSCCCCE
T ss_pred             ECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCe--EEEEECCCCccccceeeecccccCcEEEE
Confidence            999885       35665    6778899999999999  888999999  88888876553    23444555689999


Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCceE-Eee-ccCCCeeEEEE--cCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCc
Q 042434          360 AVTPDGENLISVLSDKDIRILNLGTYAE-RVI-SEEHPITSLSV--SVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGH  435 (517)
Q Consensus       360 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~-~~~~~i~~~~~--s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~  435 (517)
                      +|+  |..+++++ ++.|++||+.+... ... .|...+..++|  +|++..+++++.+|+ ++|....           
T Consensus       233 aFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~-----------  297 (588)
T 2j04_A          233 KIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDE-----------  297 (588)
T ss_dssp             EEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSS-----------
T ss_pred             EEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeecc-----------
Confidence            999  68888887 69999999998873 444 78889999999  999999999999999 9999751           


Q ss_pred             ccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeC
Q 042434          436 SQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASD  502 (517)
Q Consensus       436 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~  502 (517)
                            +.   ++||+..+++.  |+++++|+...+ .+..+.+ ...|.+++|+|+| .++|+++.
T Consensus       298 ------~~---~spd~~l~a~~--d~~v~lW~~~g~-~l~~~~~-~~~I~~va~SPdG-~~lA~~~~  350 (588)
T 2j04_A          298 ------LH---VTADNIIAPYL--EKKFKKWSTIWN-EFNNYET-TLVIHGISLSPDG-YSIAIVYD  350 (588)
T ss_dssp             ------EE---EECCCSSHHHH--HHHHHHTTTTTT-SSSSSCC-EEEEEEEEECTTS-SEEEEEEE
T ss_pred             ------EE---ECCCceEEEEc--CCEEEEEECCCC-ceeeecc-ceEEEEEEECCCC-CEEEEEEe
Confidence                  22   37888877765  999999997544 3545554 6779999999999 78888874

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=2.6e-30  Score=249.93  Aligned_cols=267  Identities=16%  Similarity=0.157  Sum_probs=215.0

Q ss_pred             CEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeE-EEEeCCCeEEEEECCCCcEEEEeCCCCCceE
Q 042434          235 EYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKL-LTCGNAEVLKLWDVETGICKHTFGDHGFIVS  313 (517)
Q Consensus       235 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  313 (517)
                      .++++++.|+.|++||+.++   +....+..| ..+.+++|+|+++++ ++++.|+.|++||+.+++.+..+..+. .+.
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~---~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~   77 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSN---KVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQ   77 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTT---EEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEE
T ss_pred             EEEEEcCCCCEEEEEECCCC---eEEEEeecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Ccc
Confidence            46788899999999999765   444556655 458999999999987 677789999999999999988886554 899


Q ss_pred             EEEEeCCCCeEEEee-CCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEE-EEEeCCCcEEEEECCCce-EEee
Q 042434          314 SCAWFPDSKRLVCGS-SDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENL-ISVLSDKDIRILNLGTYA-ERVI  390 (517)
Q Consensus       314 ~i~~~~~~~~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~-~~~~  390 (517)
                      +++|+|+++++++++ .++.  |++||..+.........+ ..+.+++|+|+++.+ ++++.++.|++||+.+++ ....
T Consensus        78 ~~~~spdg~~l~~~~~~~~~--v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~  154 (391)
T 1l0q_A           78 GVAVSPDGKQVYVTNMASST--LSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV  154 (391)
T ss_dssp             EEEECTTSSEEEEEETTTTE--EEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             ceEECCCCCEEEEEECCCCE--EEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence            999999999886555 5688  889999876554433333 368999999999977 677789999999999887 4444


Q ss_pred             ccCCCeeEEEEcCCCCEE-EEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEec---CCCcEEEE
Q 042434          391 SEEHPITSLSVSVDCKNF-IVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGS---ENSQIYIW  466 (517)
Q Consensus       391 ~~~~~i~~~~~s~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~iw  466 (517)
                      .....+..++|+|+++.+ ++++.++.|++||+++. .....+..+.    .+..+.++|+|+++++++   .++.|++|
T Consensus       155 ~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~~~~----~~~~~~~~~~g~~l~~~~~~~~~~~v~~~  229 (391)
T 1l0q_A          155 SVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN-SVIDTVKVEA----APSGIAVNPEGTKAYVTNVDKYFNTVSMI  229 (391)
T ss_dssp             ECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEECSS----EEEEEEECTTSSEEEEEEECSSCCEEEEE
T ss_pred             ecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC-eEEEEEecCC----CccceEECCCCCEEEEEecCcCCCcEEEE
Confidence            556678999999999988 56677899999999876 4444443322    355566799999999888   68999999


Q ss_pred             ecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434          467 NRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS  515 (517)
Q Consensus       467 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~  515 (517)
                      |+.+++.+..+..|. .+.+++|+|++..++++++.|+.|++||+.+++
T Consensus       230 d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~  277 (391)
T 1l0q_A          230 DTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNT  277 (391)
T ss_dssp             ETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             ECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCc
Confidence            999999999888765 578999999995455788899999999998765

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.5e-32  Score=255.37  Aligned_cols=266  Identities=10%  Similarity=0.016  Sum_probs=204.1

Q ss_pred             EECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECC---------CC
Q 042434          229 QFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVE---------TG  299 (517)
Q Consensus       229 ~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~---------~~  299 (517)
                      .+.+++.+|++|+.||+|++||+.++.......     ...|.++.|+|+   +++++.|++|++|+..         ++
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~-----~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~  114 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT-----TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTN  114 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE-----EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTC
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe-----cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCc
Confidence            455688899999999999999998775443322     456788889988   9999999999999665         55


Q ss_pred             cEEEEeC-CCCCceEEEEEeC--CCCeEEEeeCCCceeEEEEeCCCCeeE-eeeCcCCCceEEEEEccCCCEEEEEeCCC
Q 042434          300 ICKHTFG-DHGFIVSSCAWFP--DSKRLVCGSSDTEKGIFMCDCDGNEIK-AWRGTRIPKVLDLAVTPDGENLISVLSDK  375 (517)
Q Consensus       300 ~~~~~~~-~~~~~v~~i~~~~--~~~~l~~~~~d~~v~i~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  375 (517)
                      +.+..+. .|...|.+++|+|  +++++++++.||.  +.+||....... .....+...+.+++|+|++.++++|+.||
T Consensus       115 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~--i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg  192 (343)
T 3lrv_A          115 KVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGT--IGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDG  192 (343)
T ss_dssp             CEEEEEECCCSSCEEEEECCC---CCEEEEEETTCC--EEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTS
T ss_pred             ceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCc--EEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCC
Confidence            5455443 6778899999999  9999999999999  888888765443 33345555799999999999999999999


Q ss_pred             cEEEEECCCce-E--Eeec-cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEE--EeecCCC
Q 042434          376 DIRILNLGTYA-E--RVIS-EEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVI--RSCFGGL  449 (517)
Q Consensus       376 ~i~i~d~~~~~-~--~~~~-~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i--~~~~~s~  449 (517)
                      .|++||++++. .  .... |..+|.+++|+|++.++++++ ++.|++||++.. .....+..+......+  .++.|+|
T Consensus       193 ~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  270 (343)
T 3lrv_A          193 ILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKD-VGTLAYPTYTIPEFKTGTVTYDIDD  270 (343)
T ss_dssp             CEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSS-TTCBSSCCCBC-----CCEEEEECT
T ss_pred             EEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCC-CcceeecccccccccccceEEEECC
Confidence            99999999877 2  3444 788999999999999999999 559999999876 3333333211111122  2466799


Q ss_pred             CCcEEEEecC-CCcEEEEecCCCceeEEecCCCCCeeEEEecC---CCCcEEEEeeCCCcEEEeCC
Q 042434          450 DGTFIASGSE-NSQIYIWNRRNSKPIEILSGHSMTVNCVSWNP---KRPKMLASASDDHTIRIWGP  511 (517)
Q Consensus       450 ~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~---~~~~~l~s~~~dg~v~iw~~  511 (517)
                      +|++|++++. |+.|++|++.+.......    .++..++|.|   +. ..+++++.||.+.++-.
T Consensus       271 ~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~l~~~~~d~~~~~~~~  331 (343)
T 3lrv_A          271 SGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADF-TDMDVVCGDGGIAAILK  331 (343)
T ss_dssp             TSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCC-CEEEEEEETTEEEEEEE
T ss_pred             CCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCcccccc-ceeEEEecCCceEEEEe
Confidence            9999999988 999999999766543333    5677888888   66 67888888998887743

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.9e-31  Score=254.60  Aligned_cols=246  Identities=14%  Similarity=0.085  Sum_probs=192.7

Q ss_pred             EEeccccCcEEEEEECCCCCEEEEe-----------eCCCcEEEEEecCCCe-eeEEEEe-----ccCCCCEEEEEECCC
Q 042434          216 QILTEHKNEVWFVQFSNNGEYLASS-----------SSDCSAIIWKVLEDSK-LTLKHTL-----RSHQNPVSFVAWSPD  278 (517)
Q Consensus       216 ~~l~~h~~~v~~~~~s~~~~~l~t~-----------~~dg~i~iw~~~~~~~-~~~~~~~-----~~h~~~v~~l~~s~~  278 (517)
                      ..+.+|.+.|.+++++  ++.+++|           +.|+.+++|++..... .......     ..+...+.+++|+||
T Consensus        67 ~~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpD  144 (365)
T 4h5i_A           67 FALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISRE  144 (365)
T ss_dssp             EECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTT
T ss_pred             EEccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCC
Confidence            3577899999988775  4456554           4578899999875432 2222222     234556999999999


Q ss_pred             CCeEEEE--eCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeC-CCCeeE-eeeCcCCC
Q 042434          279 DTKLLTC--GNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDC-DGNEIK-AWRGTRIP  354 (517)
Q Consensus       279 ~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~-~~~~~~-~~~~~~~~  354 (517)
                      |++++++  +.|++|+|||+.+++++..+ .|...|.+++|+|||+++++++.++   +..|+. .+.... .....+..
T Consensus       145 g~~la~as~~~d~~i~iwd~~~~~~~~~~-~~~~~V~~v~fspdg~~l~s~s~~~---~~~~~~~~~~~~~~~~~~~~~~  220 (365)
T 4h5i_A          145 GTVAAIASSKVPAIMRIIDPSDLTEKFEI-ETRGEVKDLHFSTDGKVVAYITGSS---LEVISTVTGSCIARKTDFDKNW  220 (365)
T ss_dssp             SSCEEEEESCSSCEEEEEETTTTEEEEEE-ECSSCCCEEEECTTSSEEEEECSSC---EEEEETTTCCEEEEECCCCTTE
T ss_pred             CCEEEEEECCCCCEEEEeECCCCcEEEEe-CCCCceEEEEEccCCceEEecccee---EEEEEeccCcceeeeecCCCCC
Confidence            9998754  47899999999999999888 4778899999999999999998776   444444 444443 33444556


Q ss_pred             ceEEEEEccCCCEEEEEeCCC----cEEEEECCCce------EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 042434          355 KVLDLAVTPDGENLISVLSDK----DIRILNLGTYA------ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAG  424 (517)
Q Consensus       355 ~i~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~------~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~  424 (517)
                      .+.+++|+|+++.+++++.++    .+++||+....      .....+...|++++|+|+|++|++|+.|+.|++||+.+
T Consensus       221 ~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~  300 (365)
T 4h5i_A          221 SLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKD  300 (365)
T ss_dssp             EEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTT
T ss_pred             CEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCC
Confidence            899999999999999999887    68889887654      23446778899999999999999999999999999988


Q ss_pred             CCccceE-EeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCC
Q 042434          425 KWEKPFK-YTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS  471 (517)
Q Consensus       425 ~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  471 (517)
                      + ..... ..+|...   +.++.|+|||++|++|+.|++|+|||+...
T Consensus       301 ~-~~~~~~~~gH~~~---V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          301 L-SMSKIFKQAHSFA---ITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             T-EEEEEETTSSSSC---EEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             C-cEEEEecCcccCC---EEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            7 55554 4678766   667778999999999999999999998643

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=3.1e-29  Score=242.39  Aligned_cols=300  Identities=15%  Similarity=0.141  Sum_probs=229.5

Q ss_pred             CCcccccCCCcccEEEeccccCcEEEEEECCCCCEE-EEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCC
Q 042434          202 DHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYL-ASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDT  280 (517)
Q Consensus       202 ~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~  280 (517)
                      +....|+....+.+..+.+|.. +.+++|+|+|+++ ++++.|+.|++||..++   +....+..+. .+.+++|+|+++
T Consensus        12 ~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~---~~~~~~~~~~-~v~~~~~spdg~   86 (391)
T 1l0q_A           12 DNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATN---NVIATVPAGS-SPQGVAVSPDGK   86 (391)
T ss_dssp             TEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTT---EEEEEEECSS-SEEEEEECTTSS
T ss_pred             CEEEEEECCCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCC---eEEEEEECCC-CccceEECCCCC
Confidence            3444566566777788877754 8999999999977 67778999999999765   3445555444 899999999999


Q ss_pred             eEEEE-eCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeE-EEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEE
Q 042434          281 KLLTC-GNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRL-VCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLD  358 (517)
Q Consensus       281 ~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~  358 (517)
                      +|+++ +.++.|++||+.+++.+..+.. ...+.+++|+|+++.+ ++++.++.  |++||..+.........+ ..+.+
T Consensus        87 ~l~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~--v~~~d~~~~~~~~~~~~~-~~~~~  162 (391)
T 1l0q_A           87 QVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKT--VSVINTVTKAVINTVSVG-RSPKG  162 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTE--EEEEETTTTEEEEEEECC-SSEEE
T ss_pred             EEEEEECCCCEEEEEECCCCeEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCE--EEEEECCCCcEEEEEecC-CCcce
Confidence            88654 5679999999999998888754 4568999999999977 67777888  889998765543333323 36799


Q ss_pred             EEEccCCCEE-EEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEe---CCCeEEEEEcCCCCccceEEe
Q 042434          359 LAVTPDGENL-ISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNL---NSQEIHMWDVAGKWEKPFKYT  433 (517)
Q Consensus       359 ~~~~~~~~~l-~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~---~d~~i~~~d~~~~~~~~~~~~  433 (517)
                      ++|+|+++.+ ++++.++.|++||+++.. .....+...+.+++|+|+++++++++   .++.|++||+.+. .....+.
T Consensus       163 ~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~-~~~~~~~  241 (391)
T 1l0q_A          163 IAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN-KITARIP  241 (391)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT-EEEEEEE
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC-eEEEEEe
Confidence            9999999987 567788999999999887 44555667889999999999999888   6899999999876 5555555


Q ss_pred             CcccCceEEEeecCCCCCcEE-EEecCCCcEEEEecCCCceeEEecCCCCCee---EEEecCCC----------------
Q 042434          434 GHSQNKYVIRSCFGGLDGTFI-ASGSENSQIYIWNRRNSKPIEILSGHSMTVN---CVSWNPKR----------------  493 (517)
Q Consensus       434 ~~~~~~~~i~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~---~v~~~~~~----------------  493 (517)
                      .+..    +..+.++|+|+++ ++++.|+.|++||+.+++.+..+..|..+..   .+.+.|++                
T Consensus       242 ~~~~----~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~  317 (391)
T 1l0q_A          242 VGPD----PAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGY  317 (391)
T ss_dssp             CCSS----EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSE
T ss_pred             cCCC----ccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeeccccccccccccccccccccc
Confidence            5433    3455669999877 6778899999999999999988876654421   12222211                


Q ss_pred             -----CcEEEEeeCCCcEEEeCCCCCC
Q 042434          494 -----PKMLASASDDHTIRIWGPCQSS  515 (517)
Q Consensus       494 -----~~~l~s~~~dg~v~iw~~~~~~  515 (517)
                           +..+...+.|..+++|++..+.
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~W~~~~g~  344 (391)
T 1l0q_A          318 IFLSEPVQFTDLSKDATEWKWDFGDGS  344 (391)
T ss_dssp             EETTCCEEEEECCBSCSEEEEECSSSC
T ss_pred             ccccceEEEEeCCCCceEEEEECCCCc
Confidence                 1346677789999999997664

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=1.9e-31  Score=257.49  Aligned_cols=263  Identities=12%  Similarity=0.100  Sum_probs=170.9

Q ss_pred             eccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCee--eEEEEeccCCCCEEEEEECC--------CCCeEEEEeC
Q 042434          218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKL--TLKHTLRSHQNPVSFVAWSP--------DDTKLLTCGN  287 (517)
Q Consensus       218 l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~--~~~~~~~~h~~~v~~l~~s~--------~~~~l~s~~~  287 (517)
                      ...|...+....+++++.+||+|+.|++|+|||...+...  .....+.+|.+.|.+++|+|        |+++||+|+.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~  164 (393)
T 4gq1_A           85 ENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGD  164 (393)
T ss_dssp             CC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEET
T ss_pred             ccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEEC
Confidence            3445555555666677889999999999999999866432  23345789999999999998        7899999999


Q ss_pred             CCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCC-eEEEeeCCCceeEEEEeCCCCeeEeee-----------------
Q 042434          288 AEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSK-RLVCGSSDTEKGIFMCDCDGNEIKAWR-----------------  349 (517)
Q Consensus       288 dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~~-----------------  349 (517)
                      |++|+|||+.++.+...+..|...|.+++|+|++. +|++++.|+.  |.+||..........                 
T Consensus       165 D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~--v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~  242 (393)
T 4gq1_A          165 DCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGN--IRIFDWTLNLSAEENSQTELVKNPWLLTLNTL  242 (393)
T ss_dssp             TSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSE--EEEEETTCCC----------CSCCCSEEEESG
T ss_pred             CCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCE--EEEEECCCCcccccccccCCcccceEEecccc
Confidence            99999999999888888888999999999999874 7999999999  777787643321111                 


Q ss_pred             --------CcCCCceEEEEEc-cCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEE
Q 042434          350 --------GTRIPKVLDLAVT-PDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIH  418 (517)
Q Consensus       350 --------~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~  418 (517)
                              ..+...+.++.|+ ++++.+++++.|+.+++||+....  .....+...+..+.+.|+.+.+          
T Consensus       243 ~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----------  312 (393)
T 4gq1_A          243 PLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGI----------  312 (393)
T ss_dssp             GGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEE----------
T ss_pred             cceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccc----------
Confidence                    1122234445543 455555555555555555554433  1111222222222222221110          


Q ss_pred             EEEcCCCCccceEEeCcccCceEEEeecCC-CCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEE
Q 042434          419 MWDVAGKWEKPFKYTGHSQNKYVIRSCFGG-LDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKML  497 (517)
Q Consensus       419 ~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l  497 (517)
                                    ..+   ...+..++++ .++.++++|+.||.|++||+.+++++..+.+|..+|++++|+|+| ++|
T Consensus       313 --------------~~~---~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG-~~L  374 (393)
T 4gq1_A          313 --------------SLF---PSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDG-SHL  374 (393)
T ss_dssp             --------------CSS---CCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTS-SEE
T ss_pred             --------------ccc---CcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCC-CEE
Confidence                          000   0111222222 356678889999999999999999998888999999999999999 799


Q ss_pred             EEeeCCCcEEEeCC
Q 042434          498 ASASDDHTIRIWGP  511 (517)
Q Consensus       498 ~s~~~dg~v~iw~~  511 (517)
                      |++++|| +.+|++
T Consensus       375 A~as~~G-v~lvrL  387 (393)
T 4gq1_A          375 AIATEGS-VLLTRL  387 (393)
T ss_dssp             EEEESSE-EEEEEE
T ss_pred             EEEeCCC-eEEEEE
Confidence            9999877 445544

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.9e-30  Score=254.42  Aligned_cols=274  Identities=20%  Similarity=0.265  Sum_probs=208.8

Q ss_pred             cccccCCCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEE
Q 042434          196 AISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAW  275 (517)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~  275 (517)
                      ..+..++....|+....+....+.+|.+.|++++|  ++++|++|+.||.|++||+.++   .....+.+|...|.+++|
T Consensus       147 ~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~l~~  221 (435)
T 1p22_A          147 VSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG---EMLNTLIHHCEAVLHLRF  221 (435)
T ss_dssp             EEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC---CEEEEECCCCSCEEEEEC
T ss_pred             EEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCC---cEEEEEcCCCCcEEEEEE
Confidence            44455556667777788899999999999999999  7889999999999999999766   456778899999999999


Q ss_pred             CCCCCeEEEEeCCCeEEEEECCCCcEE---EEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcC
Q 042434          276 SPDDTKLLTCGNAEVLKLWDVETGICK---HTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTR  352 (517)
Q Consensus       276 s~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~  352 (517)
                      ++  ..+++|+.||.|++||+.++...   ..+.+|...|.+++|  +++++++|+.||.  |.+||............+
T Consensus       222 ~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~--i~vwd~~~~~~~~~~~~~  295 (435)
T 1p22_A          222 NN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRT--IKVWNTSTCEFVRTLNGH  295 (435)
T ss_dssp             CT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSE--EEEEETTTCCEEEEEECC
T ss_pred             cC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCe--EEEEECCcCcEEEEEcCC
Confidence            74  59999999999999999888655   677799999999999  6889999999999  888898765444333345


Q ss_pred             CCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc---
Q 042434          353 IPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWE---  427 (517)
Q Consensus       353 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~---  427 (517)
                      ...+.++.+  +++.+++|+.||.|++||++++.  .....+...+.++++  ++.++++++.||.|++||+.+...   
T Consensus       296 ~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~  371 (435)
T 1p22_A          296 KRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRA  371 (435)
T ss_dssp             SSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTS
T ss_pred             CCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccc
Confidence            568988888  46899999999999999999877  445567788999988  788999999999999999965421   


Q ss_pred             -----cceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEec
Q 042434          428 -----KPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWN  490 (517)
Q Consensus       428 -----~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~  490 (517)
                           ....+.+|......   +.+  ++.+|++|+.||.|++||+.+........ ...+..++.|.
T Consensus       372 ~~~~~~~~~~~~h~~~v~~---l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~  433 (435)
T 1p22_A          372 PAGTLCLRTLVEHSGRVFR---LQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEP-PRSPSRTYTYI  433 (435)
T ss_dssp             CTTTTEEEEECCCSSCCCC---EEE--CSSCEEECCSSSEEEEEC-----------------------
T ss_pred             cccchheeeccCCCCCeEE---EEe--CCCEEEEEeCCCEEEEEECCCCCCcccCC-CCCCccceeee
Confidence                 45566777765433   333  78899999999999999998876554433 23445555554

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.98  E-value=2.9e-30  Score=234.28  Aligned_cols=256  Identities=15%  Similarity=0.104  Sum_probs=173.3

Q ss_pred             cEEEEEECCCCC---EEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCC----------------------
Q 042434          224 EVWFVQFSNNGE---YLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPD----------------------  278 (517)
Q Consensus       224 ~v~~~~~s~~~~---~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~----------------------  278 (517)
                      .+.++-|-..|-   .+++++. ..|++|+..++.+++..+++.+|..+|..+.+.||                      
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~  119 (356)
T 2w18_A           41 DVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFC  119 (356)
T ss_dssp             EEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC
T ss_pred             EEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEE
Confidence            355566655443   5677765 68999999988778889999999887776666664                      


Q ss_pred             -------CCeEEEEeCCCeEEEEECCCCcEEEE-eCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeC
Q 042434          279 -------DTKLLTCGNAEVLKLWDVETGICKHT-FGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRG  350 (517)
Q Consensus       279 -------~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~  350 (517)
                             +..+++++.  .+.+|++.+++.+.. ..+|...|..++++|+|+.+.                     ....
T Consensus       120 spd~~~~~~~l~s~g~--~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~---------------------s~~~  176 (356)
T 2w18_A          120 SSDDESEKQVLLKSGN--IKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKE---------------------NQFL  176 (356)
T ss_dssp             ------CCEEEEEEEE--EEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEE---------------------EEEE
T ss_pred             CCCccccccEEEeCCC--eEEEEecCCCcEEEecccCCCCcEEEEEECCCCceee---------------------eecc
Confidence                   334444332  244444444444443 234444444444444444333                     2222


Q ss_pred             cCCCceEEEEEcc---CCCEEEEEeCCCcEEEEECCCce-EEee-ccC---CCeeEEEEcCCCCEE------------EE
Q 042434          351 TRIPKVLDLAVTP---DGENLISVLSDKDIRILNLGTYA-ERVI-SEE---HPITSLSVSVDCKNF------------IV  410 (517)
Q Consensus       351 ~~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~-~~~~-~~~---~~i~~~~~s~~~~~l------------~~  410 (517)
                       +...+..++|++   ++..+++++.|++|++||+.+++ ...+ .+.   ..+.+++|+|+|..+            ++
T Consensus       177 -~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laS  255 (356)
T 2w18_A          177 -MPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESL  255 (356)
T ss_dssp             -CCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC----------
T ss_pred             -CCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeec
Confidence             224677888888   78999999999999999999988 2333 222   356778999999887            45


Q ss_pred             EeCCCeEEEEEcCCCCccceEE-----eCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCee
Q 042434          411 NLNSQEIHMWDVAGKWEKPFKY-----TGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVN  485 (517)
Q Consensus       411 ~~~d~~i~~~d~~~~~~~~~~~-----~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~  485 (517)
                      |+.|++|++||..++ .....+     .+|...  .+..   +.++.++++|+.||+|+|||+.+++++.++.+|...+.
T Consensus       256 Gs~D~tIklWd~~tg-k~l~v~~~~~p~Gh~~~--~lsg---~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vv  329 (356)
T 2w18_A          256 RSPVFQLIVINPKTT-LSVGVMLYCLPPGQAGR--FLEG---DVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHW  329 (356)
T ss_dssp             --CCEEEEEEETTTT-EEEEEEEECCCTTCCCC--EEEE---EEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCC
T ss_pred             cCCCcEEEEEECCCC-EEEEEEEeeccCCCcce--eEcc---ccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeE
Confidence            678899999999876 333322     233322  1211   23467899999999999999999999999999987665


Q ss_pred             -EEEecCCCCcEEEEeeCCCcEEEeCC
Q 042434          486 -CVSWNPKRPKMLASASDDHTIRIWGP  511 (517)
Q Consensus       486 -~v~~~~~~~~~l~s~~~dg~v~iw~~  511 (517)
                       .++|+|+| .+|+||+.|++|+|||+
T Consensus       330 s~vafSPDG-~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          330 SFVKWSGTD-SHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             CEEEECSSS-SEEEEECTTSCEEEEEE
T ss_pred             EEEEECCCC-CEEEEEECCCcEEEecC
Confidence             58999999 79999999999999986

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.98  E-value=1.1e-29  Score=237.98  Aligned_cols=262  Identities=20%  Similarity=0.279  Sum_probs=216.8

Q ss_pred             cCCCcccccCCCcccEEEec--cccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECC
Q 042434          200 YEDHCCGRDQIPTETVQILT--EHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP  277 (517)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~l~--~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~  277 (517)
                      .+.....|+...+++++.+.  +|...|++++|+|++++||+|+.||+|++|++.++   +....+.+|...+.++.+  
T Consensus        43 ~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~---~~~~~~~~h~~~~~~~~~--  117 (318)
T 4ggc_A           43 LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ---KRLRNMTSHSARVGSLSW--  117 (318)
T ss_dssp             ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEE--
T ss_pred             eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCc---eeEEEecCccceEEEeec--
Confidence            35556667767777777664  68889999999999999999999999999999766   556778899998887665  


Q ss_pred             CCCeEEEEeCCCeEEEEECCCC-cEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCe----eEeeeCcC
Q 042434          278 DDTKLLTCGNAEVLKLWDVETG-ICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNE----IKAWRGTR  352 (517)
Q Consensus       278 ~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~----~~~~~~~~  352 (517)
                      ++..+++++.++.+++|+..++ ..+..+.+|...+.++.++++++++++++.|+.  |.+||.....    .......+
T Consensus       118 ~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~--i~iwd~~~~~~~~~~~~~~~~~  195 (318)
T 4ggc_A          118 NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNL--VNVWPSAPGEGGWVPLQTFTQH  195 (318)
T ss_dssp             ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC--EEEEESSCBTTBSCCSEEECCC
T ss_pred             CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcc--eeEEECCCCcccccceeeeccc
Confidence            5679999999999999998876 456677899999999999999999999999999  7778876422    12223344


Q ss_pred             CCceEEEEEccCCCEE---EEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEe--CCCeEEEEEcCCCC
Q 042434          353 IPKVLDLAVTPDGENL---ISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNL--NSQEIHMWDVAGKW  426 (517)
Q Consensus       353 ~~~i~~~~~~~~~~~l---~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~--~d~~i~~~d~~~~~  426 (517)
                      .+.|.++.++|++..+   ++++.++.|++||..... .....+...+..+.++|++..+++++  .|+.|++||++++ 
T Consensus       196 ~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~-  274 (318)
T 4ggc_A          196 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM-  274 (318)
T ss_dssp             CSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC-
T ss_pred             CCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCC-
Confidence            4579999999987633   456778999999998877 56667788899999999999988765  6899999999887 


Q ss_pred             ccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCc
Q 042434          427 EKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSK  472 (517)
Q Consensus       427 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  472 (517)
                      ..+..+.+|...   +.++.|+|+|++|++|+.||+|++||+....
T Consensus       275 ~~~~~l~gH~~~---V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          275 AKVAELKGHTSR---VLSLTMSPDGATVASAAADETLRLWRCFELD  317 (318)
T ss_dssp             CEEEEECCCSSC---EEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred             cEEEEEcCCCCC---EEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence            777888888876   6666779999999999999999999997654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.98  E-value=1.4e-30  Score=254.75  Aligned_cols=251  Identities=20%  Similarity=0.315  Sum_probs=205.8

Q ss_pred             EEEeccccCcEEEEEECCC-CCEEEEeeCCCcEEEEEecCC-------CeeeEEEEeccCCCCEEEEEECCCCC-eEEEE
Q 042434          215 VQILTEHKNEVWFVQFSNN-GEYLASSSSDCSAIIWKVLED-------SKLTLKHTLRSHQNPVSFVAWSPDDT-KLLTC  285 (517)
Q Consensus       215 ~~~l~~h~~~v~~~~~s~~-~~~l~t~~~dg~i~iw~~~~~-------~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~  285 (517)
                      .....+|.+.|++++|+|+ +.+||+|+.||.|++|++...       ........+.+|...|.+++|+|++. +|++|
T Consensus       121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  200 (430)
T 2xyi_A          121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA  200 (430)
T ss_dssp             EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred             EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence            3556789999999999997 789999999999999999751       12345567889999999999999988 99999


Q ss_pred             eCCCeEEEEECCCCcE-------EEEeCCCCCceEEEEEeC-CCCeEEEeeCCCceeEEEEeCCCC----eeEeeeCcCC
Q 042434          286 GNAEVLKLWDVETGIC-------KHTFGDHGFIVSSCAWFP-DSKRLVCGSSDTEKGIFMCDCDGN----EIKAWRGTRI  353 (517)
Q Consensus       286 ~~dg~i~iwd~~~~~~-------~~~~~~~~~~v~~i~~~~-~~~~l~~~~~d~~v~i~~~~~~~~----~~~~~~~~~~  353 (517)
                      +.||.|++||+.++..       ...+..|...|.+++|+| ++..|++++.||.  |.+||.+..    .+..+. .+.
T Consensus       201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~--i~i~d~~~~~~~~~~~~~~-~~~  277 (430)
T 2xyi_A          201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK--LMIWDTRNNNTSKPSHTVD-AHT  277 (430)
T ss_dssp             CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSE--EEEEETTCSCSSSCSEEEE-CCS
T ss_pred             eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCe--EEEEECCCCCCCcceeEee-cCC
Confidence            9999999999987422       356678999999999999 6789999999999  888888753    334444 444


Q ss_pred             CceEEEEEccCCC-EEEEEeCCCcEEEEECCCce---EEeeccCCCeeEEEEcCCCC-EEEEEeCCCeEEEEEcCCCC--
Q 042434          354 PKVLDLAVTPDGE-NLISVLSDKDIRILNLGTYA---ERVISEEHPITSLSVSVDCK-NFIVNLNSQEIHMWDVAGKW--  426 (517)
Q Consensus       354 ~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~s~~~~-~l~~~~~d~~i~~~d~~~~~--  426 (517)
                      ..|.+++|+|++. .+++|+.||.|++||+++..   .....+...+.+++|+|+++ .+++++.|+.|++||+....  
T Consensus       278 ~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~  357 (430)
T 2xyi_A          278 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE  357 (430)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCC
T ss_pred             CCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccc
Confidence            6899999999987 68899999999999998743   45556888999999999985 68899999999999997621  


Q ss_pred             -----------ccceEEeCcccCceEEEeecCCCCCc-EEEEecCCCcEEEEecCCC
Q 042434          427 -----------EKPFKYTGHSQNKYVIRSCFGGLDGT-FIASGSENSQIYIWNRRNS  471 (517)
Q Consensus       427 -----------~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~  471 (517)
                                 .....+.+|...   +..+.|+|++. ++++++.||.|++|++...
T Consensus       358 ~~~~~~~~~~~~~~~~~~~h~~~---v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          358 QSTEDAEDGPPELLFIHGGHTAK---ISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             CCHHHHHHCCTTEEEECCCCSSC---EEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             cCccccccCCcceEEEcCCCCCC---ceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence                       233344455544   66667799999 9999999999999998754

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=6.9e-30  Score=244.51  Aligned_cols=253  Identities=15%  Similarity=0.171  Sum_probs=201.4

Q ss_pred             eEEEEeccCCCCEEEEEECCC---CCeEEEEeCCCeEEEEECCC-CcEE-EEeCCCCCceEEEEEeCCCCeEEEeeCCCc
Q 042434          258 TLKHTLRSHQNPVSFVAWSPD---DTKLLTCGNAEVLKLWDVET-GICK-HTFGDHGFIVSSCAWFPDSKRLVCGSSDTE  332 (517)
Q Consensus       258 ~~~~~~~~h~~~v~~l~~s~~---~~~l~s~~~dg~i~iwd~~~-~~~~-~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~  332 (517)
                      .....+.+|.+.|++++|+|+   |++|++|+.||.|++||+.+ +..+ ..+..|...|.+++|+|++++|++++.||.
T Consensus        30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~  109 (368)
T 3mmy_A           30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKT  109 (368)
T ss_dssp             CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCc
Confidence            455678899999999999999   59999999999999999987 5554 677889999999999999999999999999


Q ss_pred             eeEEEEeCCCCeeEeeeCcCCCceEEEEE--ccCCCEEEEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEE
Q 042434          333 KGIFMCDCDGNEIKAWRGTRIPKVLDLAV--TPDGENLISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFI  409 (517)
Q Consensus       333 v~i~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~  409 (517)
                        |.+|+..+........ +...|.+++|  +|++.++++++.||.|++||+++.+ .........+.++.+.  +..++
T Consensus       110 --v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~  184 (368)
T 3mmy_A          110 --AKMWDLSSNQAIQIAQ-HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVI--YPMAV  184 (368)
T ss_dssp             --EEEEETTTTEEEEEEE-CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEE--TTEEE
T ss_pred             --EEEEEcCCCCceeecc-ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEec--CCeeE
Confidence              8888988777665544 4468999999  8999999999999999999998877 3344444556666555  45889


Q ss_pred             EEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCC--CCcEEEEecCCCcEEEEecCCC---ceeEEecCCCC--
Q 042434          410 VNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGL--DGTFIASGSENSQIYIWNRRNS---KPIEILSGHSM--  482 (517)
Q Consensus       410 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~h~~--  482 (517)
                      +++.++.+.+|+++.....................+....  ....+++++.||.|++||+...   ..+..+.+|..  
T Consensus       185 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~  264 (368)
T 3mmy_A          185 VATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNG  264 (368)
T ss_dssp             EEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC-
T ss_pred             EEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccc
Confidence            9999999999999876333333322222111122222122  1234999999999999999987   66778888876  


Q ss_pred             ----------CeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434          483 ----------TVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSE  516 (517)
Q Consensus       483 ----------~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~  516 (517)
                                .|++++|+|++ .+|++++.||.|++||+.+++.
T Consensus       265 ~~~~~~~~~~~v~~~~~sp~~-~~l~s~~~dg~i~iwd~~~~~~  307 (368)
T 3mmy_A          265 TNTSAPQDIYAVNGIAFHPVH-GTLATVGSDGRFSFWDKDARTK  307 (368)
T ss_dssp             ---CCCEEECCEEEEEECTTT-CCEEEEETTSCEEEEETTTTEE
T ss_pred             ccccccccccceEEEEEecCC-CEEEEEccCCeEEEEECCCCcE
Confidence                      79999999999 7999999999999999988753

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.97  E-value=6.5e-30  Score=237.09  Aligned_cols=241  Identities=19%  Similarity=0.258  Sum_probs=186.7

Q ss_pred             hccccccCCCCCc-cccccCCCcc-cccCC--CcccEEEeccccCcEEEEEECCC--CCEEEEeeCCCcEEEEEecCCCe
Q 042434          183 SQIDSCQYHNSSV-AISLYEDHCC-GRDQI--PTETVQILTEHKNEVWFVQFSNN--GEYLASSSSDCSAIIWKVLEDSK  256 (517)
Q Consensus       183 ~q~~~~~~~~~~~-~~~~~~~~~~-~~~~~--~~~~~~~l~~h~~~v~~~~~s~~--~~~l~t~~~dg~i~iw~~~~~~~  256 (517)
                      ..+..+.|++... .++...|... .|+..  ..+++..+.+|.++|++++|+|+  +++||+|+.||+|++||+.++. 
T Consensus        10 ~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~-   88 (297)
T 2pm7_B           10 EMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGR-   88 (297)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSC-
T ss_pred             CceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCc-
Confidence            3455566666554 4444445544 44432  23678899999999999999874  8999999999999999997553 


Q ss_pred             eeEEEEeccCCCCEEEEEECCC--CCeEEEEeCCCeEEEEECCCCc--EEEEeCCCCCceEEEEEeCC------------
Q 042434          257 LTLKHTLRSHQNPVSFVAWSPD--DTKLLTCGNAEVLKLWDVETGI--CKHTFGDHGFIVSSCAWFPD------------  320 (517)
Q Consensus       257 ~~~~~~~~~h~~~v~~l~~s~~--~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~------------  320 (517)
                      ......+.+|...|.+++|+|+  +.+|++++.||+|++||+.++.  ....+..|...|.+++|+|+            
T Consensus        89 ~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~  168 (297)
T 2pm7_B           89 WSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTK  168 (297)
T ss_dssp             BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----------
T ss_pred             eEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCC
Confidence            2234567889999999999997  8899999999999999998763  23566789999999999997            


Q ss_pred             -CCeEEEeeCCCceeEEEEeCCCCe--eEeeeCcCCCceEEEEEccCC---CEEEEEeCCCcEEEEECCCce----EEe-
Q 042434          321 -SKRLVCGSSDTEKGIFMCDCDGNE--IKAWRGTRIPKVLDLAVTPDG---ENLISVLSDKDIRILNLGTYA----ERV-  389 (517)
Q Consensus       321 -~~~l~~~~~d~~v~i~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~----~~~-  389 (517)
                       +++|++|+.|+.+++|..+.....  .......|...|.+++|+|++   .++++++.|++|++||+++..    ... 
T Consensus       169 ~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~  248 (297)
T 2pm7_B          169 ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLL  248 (297)
T ss_dssp             -CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEES
T ss_pred             CcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeee
Confidence             579999999999444444332221  222233455689999999985   799999999999999997642    112 


Q ss_pred             --eccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 042434          390 --ISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAG  424 (517)
Q Consensus       390 --~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~  424 (517)
                        ..+...+.+++|+|++++|++++.|+.|++|+...
T Consensus       249 ~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          249 KEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             SSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             ecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence              24567899999999999999999999999999753

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=3.8e-29  Score=237.32  Aligned_cols=290  Identities=15%  Similarity=0.193  Sum_probs=199.4

Q ss_pred             HhccccccCCCCCc-cccccCCC-cccccCCCc----ccEEEeccccCcEEEEEECC--CCCEEEEeeCCCcEEEEEecC
Q 042434          182 TSQIDSCQYHNSSV-AISLYEDH-CCGRDQIPT----ETVQILTEHKNEVWFVQFSN--NGEYLASSSSDCSAIIWKVLE  253 (517)
Q Consensus       182 ~~q~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~----~~~~~l~~h~~~v~~~~~s~--~~~~l~t~~~dg~i~iw~~~~  253 (517)
                      ...+.++.+++... .++...|. ...|+....    .....+.+|.+.|++++|+|  ++++|++|+.||.|++||+..
T Consensus        11 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~   90 (351)
T 3f3f_A           11 DDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDP   90 (351)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECT
T ss_pred             ccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCC
Confidence            44566777776655 44444444 444543333    46778889999999999999  699999999999999999976


Q ss_pred             CC------eeeEEEEeccCCCCEEEEEECCC--CCeEEEEeCCCeEEEEECCCCcEEEEeC-------------CCCCce
Q 042434          254 DS------KLTLKHTLRSHQNPVSFVAWSPD--DTKLLTCGNAEVLKLWDVETGICKHTFG-------------DHGFIV  312 (517)
Q Consensus       254 ~~------~~~~~~~~~~h~~~v~~l~~s~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------~~~~~v  312 (517)
                      +.      .......+..|...|.+++|+|+  +.++++++.||.|++||+.+++.+..+.             .|...+
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (351)
T 3f3f_A           91 DQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSD  170 (351)
T ss_dssp             TSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCC
T ss_pred             CcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccce
Confidence            43      22556778899999999999999  9999999999999999998876543322             577899


Q ss_pred             EEEEEeCC---CCeEEEeeCCCceeEEEEeCCCCee--EeeeCcCCCceEEEEEccCC----CEEEEEeCCCcEEEEECC
Q 042434          313 SSCAWFPD---SKRLVCGSSDTEKGIFMCDCDGNEI--KAWRGTRIPKVLDLAVTPDG----ENLISVLSDKDIRILNLG  383 (517)
Q Consensus       313 ~~i~~~~~---~~~l~~~~~d~~v~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~i~i~d~~  383 (517)
                      .+++|+|+   +..+++++.++.  +..|+......  ......+...|.+++|+|++    +++++++.||.|++||++
T Consensus       171 ~~~~~~p~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~  248 (351)
T 3f3f_A          171 FCLSWCPSRFSPEKLAVSALEQA--IIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKIT  248 (351)
T ss_dssp             EEEEECCCSSSCCEEEEEETTEE--EEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEE
T ss_pred             eEEEeccCCCCCcEEEEecCCCc--EEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCC
Confidence            99999997   999999999998  55555554432  22233455689999999998    899999999999999998


Q ss_pred             CceEEee--ccCCCeeEEEEcCCCCEEEEEeC----CCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEe
Q 042434          384 TYAERVI--SEEHPITSLSVSVDCKNFIVNLN----SQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASG  457 (517)
Q Consensus       384 ~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~----d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  457 (517)
                      .......  ...........++.......+..    ...+.+|+.... .....+.+|...   +..+.|+|++++|++|
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~---v~~~~~s~~~~~l~s~  324 (351)
T 3f3f_A          249 EKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQV-ELLSEHDDHNGE---VWSVSWNLTGTILSSA  324 (351)
T ss_dssp             ECC---------------------------------------CCSEEE-EEEEEECTTSSC---EEEEEECSSSCCEEEE
T ss_pred             CCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccc-cEEEEEeccccc---EEEEEEcCCCCEEEEe
Confidence            7652221  12222233333333333333322    233444443332 445556666665   6667779999999999


Q ss_pred             cCCCcEEEEecCCCceeEEe
Q 042434          458 SENSQIYIWNRRNSKPIEIL  477 (517)
Q Consensus       458 ~~dg~i~iwd~~~~~~~~~~  477 (517)
                      +.||.|++||+.+++.+..+
T Consensus       325 ~~dg~v~iw~~~~~~~~~~~  344 (351)
T 3f3f_A          325 GDDGKVRLWKATYSNEFKCM  344 (351)
T ss_dssp             ETTSCEEEEEECTTSCEEEE
T ss_pred             cCCCcEEEEecCcCcchhhe
Confidence            99999999999988655443

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2e-29  Score=239.07  Aligned_cols=230  Identities=7%  Similarity=0.050  Sum_probs=183.5

Q ss_pred             EECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCC---------CCe
Q 042434          274 AWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD---------GNE  344 (517)
Q Consensus       274 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~---------~~~  344 (517)
                      .+.+++..+++|+.||+|++||+.+++.+..+.  ...|.++.|+|+   +++++.|+.  +.+|+..         ...
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~--i~~w~~~~~~~~~~~~~~~  115 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNR--LLLLYPGNQITILDSKTNK  115 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTE--EEEEETTTEEEEEETTTCC
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCe--EEEEEccCceEEeecCCcc
Confidence            345678899999999999999999999888775  456778888888   999999999  5555443         333


Q ss_pred             -eEeeeCcCCCceEEEEEcc--CCCEEEEEeCCCcEEEEECCCceEEe---eccCCCeeEEEEcCCCCEEEEEeCCCeEE
Q 042434          345 -IKAWRGTRIPKVLDLAVTP--DGENLISVLSDKDIRILNLGTYAERV---ISEEHPITSLSVSVDCKNFIVNLNSQEIH  418 (517)
Q Consensus       345 -~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~i~~~~~s~~~~~l~~~~~d~~i~  418 (517)
                       +......+...|.+++|+|  +++++++++.||.|++||++++....   ..+...+.+++|+|++.++++|+.||.|+
T Consensus       116 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~  195 (343)
T 3lrv_A          116 VLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILD  195 (343)
T ss_dssp             EEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEE
T ss_pred             eeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEE
Confidence             4455545556899999999  99999999999999999999887322   23455799999999999999999999999


Q ss_pred             EEEcCCCCccceEEeC-cccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecC---CCCCee--EEEecCC
Q 042434          419 MWDVAGKWEKPFKYTG-HSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSG---HSMTVN--CVSWNPK  492 (517)
Q Consensus       419 ~~d~~~~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---h~~~v~--~v~~~~~  492 (517)
                      +||++++......+.. |...   +.++.|+|+|.+|++++ |+.|++||+++++.+..+..   |...+.  +++|+|+
T Consensus       196 iwd~~~~~~~~~~~~~~h~~~---v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (343)
T 3lrv_A          196 VYNLSSPDQASSRFPVDEEAK---IKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDS  271 (343)
T ss_dssp             EEESSCTTSCCEECCCCTTSC---EEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTT
T ss_pred             EEECCCCCCCccEEeccCCCC---EEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCC
Confidence            9999987444366666 6655   66777799999999999 55999999999887666554   444454  5999999


Q ss_pred             CCcEEEEeeC-CCcEEEeCCCCCC
Q 042434          493 RPKMLASASD-DHTIRIWGPCQSS  515 (517)
Q Consensus       493 ~~~~l~s~~~-dg~v~iw~~~~~~  515 (517)
                      + .+|++++. |+.|++|++.++.
T Consensus       272 g-~~l~~~s~~d~~i~v~~~~~~~  294 (343)
T 3lrv_A          272 G-KNMIAYSNESNSLTIYKFDKKT  294 (343)
T ss_dssp             S-SEEEEEETTTTEEEEEEECTTT
T ss_pred             C-CEEEEecCCCCcEEEEEEcccc
Confidence            9 78999888 9999999986654

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.6e-28  Score=241.88  Aligned_cols=235  Identities=15%  Similarity=0.194  Sum_probs=191.5

Q ss_pred             CCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc---EEEEeCC-------------------------------------
Q 042434          268 NPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI---CKHTFGD-------------------------------------  307 (517)
Q Consensus       268 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~-------------------------------------  307 (517)
                      .++.+++|+|+|++|+++ .++.|++||+.+|+   .+..+..                                     
T Consensus         5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            578999999999966655 57899999999998   6555542                                     


Q ss_pred             -----------------CCCceEEEEEeCCCCeE-EEeeCCCceeEEEEeCC---CCeeEeeeC-cCCCceEEEEEccCC
Q 042434          308 -----------------HGFIVSSCAWFPDSKRL-VCGSSDTEKGIFMCDCD---GNEIKAWRG-TRIPKVLDLAVTPDG  365 (517)
Q Consensus       308 -----------------~~~~v~~i~~~~~~~~l-~~~~~d~~v~i~~~~~~---~~~~~~~~~-~~~~~i~~~~~~~~~  365 (517)
                                       |...|.+++|+|++++| ++++.||.  |.+|+..   +..+..+.. .+...|.+++|+|++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~  161 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKS--LLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDD  161 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTSSEEEEEEGGGTE--EEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTS
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCe--EEEEECcCCCCceeeeeecccCCCCceEEEEcCCC
Confidence                             23369999999999996 88999999  5555554   344444432 334579999999999


Q ss_pred             CEEEEEeCCCcEEEEECCCceE------EeeccCCCeeEEEEcCC---CCEEEEEeCCCeEEEEEcCCCCccceE-EeCc
Q 042434          366 ENLISVLSDKDIRILNLGTYAE------RVISEEHPITSLSVSVD---CKNFIVNLNSQEIHMWDVAGKWEKPFK-YTGH  435 (517)
Q Consensus       366 ~~l~~~~~dg~i~i~d~~~~~~------~~~~~~~~i~~~~~s~~---~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~  435 (517)
                      +++++++.+|.+++|++.+...      ....+...+.+++|+|+   ++++++++.|+.|++||+++. ..... ..+|
T Consensus       162 ~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~-~~~~~~~~~h  240 (450)
T 2vdu_B          162 TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC-FIVDKWLFGH  240 (450)
T ss_dssp             SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT-TCEEEECCCC
T ss_pred             CEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC-ceeeeeecCC
Confidence            9999999999999999987652      44567889999999999   999999999999999999876 33433 4566


Q ss_pred             ccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecC-------------------------CCCCeeEEEec
Q 042434          436 SQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSG-------------------------HSMTVNCVSWN  490 (517)
Q Consensus       436 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------------------------h~~~v~~v~~~  490 (517)
                      ...   +.++.|+ ++++|++|+.|+.|++||+.+++++..+..                         +...|.+++|+
T Consensus       241 ~~~---v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~  316 (450)
T 2vdu_B          241 KHF---VSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKS  316 (450)
T ss_dssp             SSC---EEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEEC
T ss_pred             CCc---eEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEe
Confidence            655   5556668 999999999999999999999998888763                         23578999999


Q ss_pred             CCCCcEEEEee-CCCcEEEeCC
Q 042434          491 PKRPKMLASAS-DDHTIRIWGP  511 (517)
Q Consensus       491 ~~~~~~l~s~~-~dg~v~iw~~  511 (517)
                      |++ .++++++ .|+.|++|++
T Consensus       317 ~~~-~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          317 KNL-PFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             SSS-SEEEEEETTCSEEEEEEE
T ss_pred             CCC-CEEEEEECCCCeEEEEEe
Confidence            999 6788887 8999999999

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=2.8e-28  Score=231.99  Aligned_cols=240  Identities=13%  Similarity=0.130  Sum_probs=181.7

Q ss_pred             eEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeE-EEeeCCCceeEE
Q 042434          258 TLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRL-VCGSSDTEKGIF  336 (517)
Q Consensus       258 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~~~~~d~~v~i~  336 (517)
                      ..+.....|...|.+++|+|||++|++|+.+| +++|++.+++.......+  .+..+++.++++.+ ++++.|+.  |.
T Consensus        10 ~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~--v~   84 (355)
T 3vu4_A           10 NPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLHRTNYVAFVTGVKEV--VH   84 (355)
T ss_dssp             ---------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECTTSSEEEEECSSTTE--EE
T ss_pred             CCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcCCCCEEEEEECCccE--EE
Confidence            34456688999999999999999999988775 789999888766554322  47788899988877 56777777  88


Q ss_pred             EEeCCCCe-eEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCc-e-EEeeccCCCeeEEEEcCCCCEEEE--E
Q 042434          337 MCDCDGNE-IKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTY-A-ERVISEEHPITSLSVSVDCKNFIV--N  411 (517)
Q Consensus       337 ~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~-~~~~~~~~~i~~~~~s~~~~~l~~--~  411 (517)
                      +||..... +..+. . ...|.++.++++.  ++++ .++.|++||+.+. + ......  +...+++++  .++++  +
T Consensus        85 iWd~~~~~~~~~~~-~-~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~--~~~~~~~s~--~~la~~sg  155 (355)
T 3vu4_A           85 IWDDVKKQDVSRIK-V-DAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR--FGGVCEFSN--GLLVYSNE  155 (355)
T ss_dssp             EEETTTTEEEEEEE-C-SSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE--EEEEEEEET--TEEEEEES
T ss_pred             EEECCCCcEEEEEE-C-CCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc--CCceEEEEc--cEEEEeCC
Confidence            89987544 34443 3 3489999998764  3333 5789999999887 3 111111  555667777  56666  5


Q ss_pred             eCCCeEEEEEcCCCC--------------cc-ceEEeCcccCceEEEeecCCCCCcEEEEecCCCc-EEEEecCCCceeE
Q 042434          412 LNSQEIHMWDVAGKW--------------EK-PFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQ-IYIWNRRNSKPIE  475 (517)
Q Consensus       412 ~~d~~i~~~d~~~~~--------------~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~  475 (517)
                      +.+|.|++||+.+..              .+ ...+.+|...   +.++.|+|+|++|++|+.||+ |++||+.+++++.
T Consensus       156 ~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~---v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~  232 (355)
T 3vu4_A          156 FNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNP---IKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVR  232 (355)
T ss_dssp             SCTTCEEEEECCC------------------CCEEECCCSSC---EEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEE
T ss_pred             CcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCc---eEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence            789999999998652              01 5677788776   666777999999999999998 9999999999999


Q ss_pred             Eec-C-CCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434          476 ILS-G-HSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS  515 (517)
Q Consensus       476 ~~~-~-h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~  515 (517)
                      ++. + |.+.|++++|+|++ .+|++++.|++|++||+..+.
T Consensus       233 ~~~~g~h~~~v~~~~~s~~~-~~l~s~s~d~~v~iw~~~~~~  273 (355)
T 3vu4_A          233 EFRRGLDRADVVDMKWSTDG-SKLAVVSDKWTLHVFEIFNDQ  273 (355)
T ss_dssp             EEECTTCCSCEEEEEECTTS-CEEEEEETTCEEEEEESSCCS
T ss_pred             EEEcCCCCCcEEEEEECCCC-CEEEEEECCCEEEEEEccCCC
Confidence            998 5 99999999999999 799999999999999997653

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=1.7e-27  Score=233.46  Aligned_cols=284  Identities=11%  Similarity=0.058  Sum_probs=216.5

Q ss_pred             ccCcEEEEE---ECCCCCEEEEe--------------eCCCcEEEEEecCC-CeeeEEEEeccCCCCEEEEEECCCCCeE
Q 042434          221 HKNEVWFVQ---FSNNGEYLASS--------------SSDCSAIIWKVLED-SKLTLKHTLRSHQNPVSFVAWSPDDTKL  282 (517)
Q Consensus       221 h~~~v~~~~---~s~~~~~l~t~--------------~~dg~i~iw~~~~~-~~~~~~~~~~~h~~~v~~l~~s~~~~~l  282 (517)
                      ....+..++   |+|++..++..              +.++.+.||.++.. ........+..+ ..+.+++|+|++.++
T Consensus        59 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~  137 (433)
T 3bws_A           59 KNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTG-FQPKSVRFIDNTRLA  137 (433)
T ss_dssp             TTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECS-SCBCCCEESSSSEEE
T ss_pred             cCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCC-CCceEEEEeCCCeEE
Confidence            455677778   88877665543              23343456655432 233445555544 446699999977888


Q ss_pred             EEEeCCCeEEEEECCCCcEEE-----EeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCee-EeeeCcCCCce
Q 042434          283 LTCGNAEVLKLWDVETGICKH-----TFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEI-KAWRGTRIPKV  356 (517)
Q Consensus       283 ~s~~~dg~i~iwd~~~~~~~~-----~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~-~~~~~~~~~~i  356 (517)
                      ++++.++.|++||+.+++...     .+..|...|.+++|+|++..+++++.|+.  +++|+..+... ..+. .+...+
T Consensus       138 ~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~--v~~~d~~~~~~~~~~~-~~~~~~  214 (433)
T 3bws_A          138 IPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANA--VHVFDLKTLAYKATVD-LTGKWS  214 (433)
T ss_dssp             EEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTE--EEEEETTTCCEEEEEE-CSSSSE
T ss_pred             EEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCE--EEEEECCCceEEEEEc-CCCCCe
Confidence            888889999999999999887     34478889999999999999999999999  88899876444 4444 444589


Q ss_pred             EEEEEccCCCEEEEEe-CCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEe--------CCCeEEEEEcCCCC
Q 042434          357 LDLAVTPDGENLISVL-SDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNL--------NSQEIHMWDVAGKW  426 (517)
Q Consensus       357 ~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~--------~d~~i~~~d~~~~~  426 (517)
                      .+++|+|+++.+++++ .++.|++||+++++ .........+.+++|+|+++.+++++        .|+.|++||+.++ 
T Consensus       215 ~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~-  293 (433)
T 3bws_A          215 KILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKE-  293 (433)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTT-
T ss_pred             eEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCC-
Confidence            9999999999886554 79999999998877 44455566799999999999999888        4889999999876 


Q ss_pred             ccceEEeCcccCceEEEeecCCCCCcE-EEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeC---
Q 042434          427 EKPFKYTGHSQNKYVIRSCFGGLDGTF-IASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASD---  502 (517)
Q Consensus       427 ~~~~~~~~~~~~~~~i~~~~~s~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~---  502 (517)
                      ...... .+...   +..+.++|+++. +++++.|+.|++||+.+++.+..+. +...+.+++|+|++ ..+++++.   
T Consensus       294 ~~~~~~-~~~~~---~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg-~~l~~~~~~~~  367 (433)
T 3bws_A          294 KLIDTI-GPPGN---KRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDG-KYLYVSCRGPN  367 (433)
T ss_dssp             EEEEEE-EEEEC---EEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTS-SEEEEEECCCC
T ss_pred             cEEeec-cCCCC---cceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCC-CEEEEEecCCC
Confidence            333332 22222   445566899965 5667899999999999999888886 77889999999999 56766665   


Q ss_pred             ------------CCcEEEeCCCCCC
Q 042434          503 ------------DHTIRIWGPCQSS  515 (517)
Q Consensus       503 ------------dg~v~iw~~~~~~  515 (517)
                                  ||.|++||+.+++
T Consensus       368 ~~~~~~~~~g~~dg~v~~~d~~~~~  392 (433)
T 3bws_A          368 HPTEGYLKKGLVLGKVYVIDTTTDT  392 (433)
T ss_dssp             CTTTCTTSCCSSCCEEEEEETTTTE
T ss_pred             ccccccccccccceEEEEEECCCCc
Confidence                        5799999998765

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.3e-28  Score=255.44  Aligned_cols=243  Identities=19%  Similarity=0.251  Sum_probs=196.6

Q ss_pred             HHHhccccccCCCCCc-cccccCCC-cccccCC--CcccEEEeccccCcEEEEEECCC--CCEEEEeeCCCcEEEEEecC
Q 042434          180 AVTSQIDSCQYHNSSV-AISLYEDH-CCGRDQI--PTETVQILTEHKNEVWFVQFSNN--GEYLASSSSDCSAIIWKVLE  253 (517)
Q Consensus       180 ~~~~q~~~~~~~~~~~-~~~~~~~~-~~~~~~~--~~~~~~~l~~h~~~v~~~~~s~~--~~~l~t~~~dg~i~iw~~~~  253 (517)
                      .+...+.++.+++... .++...++ ...|+..  .......+.+|.+.|++++|+|+  +++|++|+.||.|++||+.+
T Consensus         7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~   86 (753)
T 3jro_A            7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN   86 (753)
T ss_dssp             -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEET
T ss_pred             cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCC
Confidence            4556677778877665 33444444 4455543  45678889999999999999998  99999999999999999986


Q ss_pred             CCeeeEEEEeccCCCCEEEEEECCC--CCeEEEEeCCCeEEEEECCCCc--EEEEeCCCCCceEEEEEeC----------
Q 042434          254 DSKLTLKHTLRSHQNPVSFVAWSPD--DTKLLTCGNAEVLKLWDVETGI--CKHTFGDHGFIVSSCAWFP----------  319 (517)
Q Consensus       254 ~~~~~~~~~~~~h~~~v~~l~~s~~--~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~----------  319 (517)
                      + .......+.+|...|.+++|+|+  ++.+++|+.||.|++||+.++.  ....+..|...|.+++|+|          
T Consensus        87 ~-~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~  165 (753)
T 3jro_A           87 G-RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHN  165 (753)
T ss_dssp             T-EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC--------
T ss_pred             C-cccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccc
Confidence            5 33466778899999999999999  9999999999999999998873  3445668999999999999          


Q ss_pred             ---CCCeEEEeeCCCceeEEEEeCCCC----eeEeeeCcCCCceEEEEEccC---CCEEEEEeCCCcEEEEECCCce---
Q 042434          320 ---DSKRLVCGSSDTEKGIFMCDCDGN----EIKAWRGTRIPKVLDLAVTPD---GENLISVLSDKDIRILNLGTYA---  386 (517)
Q Consensus       320 ---~~~~l~~~~~d~~v~i~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~---  386 (517)
                         ++..+++|+.||.  |.+||....    ........+...|.+++|+|+   ++.+++++.||.|++||+.+..   
T Consensus       166 ~~~d~~~l~sgs~dg~--I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~  243 (753)
T 3jro_A          166 GTKESRKFVTGGADNL--VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPW  243 (753)
T ss_dssp             -CGGGCCEEEEETTSC--EEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCC
T ss_pred             cCCCCCEEEEEECCCe--EEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcc
Confidence               5899999999999  555555432    222333445568999999999   8999999999999999998863   


Q ss_pred             ----EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 042434          387 ----ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK  425 (517)
Q Consensus       387 ----~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~  425 (517)
                          .....+...+.+++|+|+++++++++.||.|++||+...
T Consensus       244 ~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~  286 (753)
T 3jro_A          244 KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE  286 (753)
T ss_dssp             BCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred             eeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence                222346778999999999999999999999999999754

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=2.5e-27  Score=229.96  Aligned_cols=277  Identities=16%  Similarity=0.155  Sum_probs=218.8

Q ss_pred             cccccC--CCcccE--EEeccccCcEEEEEECC--------------CCCEEEEeeCC------CcEEEEEecCCCeeeE
Q 042434          204 CCGRDQ--IPTETV--QILTEHKNEVWFVQFSN--------------NGEYLASSSSD------CSAIIWKVLEDSKLTL  259 (517)
Q Consensus       204 ~~~~~~--~~~~~~--~~l~~h~~~v~~~~~s~--------------~~~~l~t~~~d------g~i~iw~~~~~~~~~~  259 (517)
                      ...|+.  ...+.+  ..+.+|...+..+++++              .+..++.++.+      +.|++||+....    
T Consensus        95 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~----  170 (415)
T 2hqs_A           95 YQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN----  170 (415)
T ss_dssp             EEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS----
T ss_pred             EEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC----
Confidence            445665  566666  55889999888888775              25667666654      799999996432    


Q ss_pred             EEEeccCCCCEEEEEECCCCCeEEEEeCCC---eEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEE-EeeCCCceeE
Q 042434          260 KHTLRSHQNPVSFVAWSPDDTKLLTCGNAE---VLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLV-CGSSDTEKGI  335 (517)
Q Consensus       260 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~~d~~v~i  335 (517)
                      ...+.+|...|.+++|+|||++|++++.++   .|++||+.+++... +..+...+.+++|+|||+.|+ +++.++...|
T Consensus       171 ~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~-l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i  249 (415)
T 2hqs_A          171 QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNL  249 (415)
T ss_dssp             CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-EECCSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred             CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE-eecCCCcccCEEEcCCCCEEEEEEecCCCceE
Confidence            245667889999999999999999999875   99999999998764 557788999999999999888 6677777779


Q ss_pred             EEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeC-CC--cEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEE
Q 042434          336 FMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLS-DK--DIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVN  411 (517)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~  411 (517)
                      +.||..+.....+..+. ..+.+++|+|+|+.+++++. ++  .|++||+.++. .....+...+.+++|+|+|++++++
T Consensus       250 ~~~d~~~~~~~~l~~~~-~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~  328 (415)
T 2hqs_A          250 YVMDLASGQIRQVTDGR-SNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMV  328 (415)
T ss_dssp             EEEETTTCCEEECCCCS-SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEE
T ss_pred             EEEECCCCCEEeCcCCC-CcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEE
Confidence            99999877666555443 57999999999999988876 44  68888998876 4444566788899999999999988


Q ss_pred             eCC---CeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCC---cEEEEecCCCceeEEecCCCCCee
Q 042434          412 LNS---QEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENS---QIYIWNRRNSKPIEILSGHSMTVN  485 (517)
Q Consensus       412 ~~d---~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~h~~~v~  485 (517)
                      +.+   ..|.+||+.++..  ..+..+.    .+....|+|+|++|++++.++   .|++||+. +.....+.+|.+.|.
T Consensus       329 ~~~~g~~~i~~~d~~~~~~--~~l~~~~----~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~  401 (415)
T 2hqs_A          329 SSNGGQQHIAKQDLATGGV--QVLSSTF----LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVK  401 (415)
T ss_dssp             EECSSCEEEEEEETTTCCE--EECCCSS----SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEE
T ss_pred             ECcCCceEEEEEECCCCCE--EEecCCC----CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCc
Confidence            764   5899999987622  3343332    244566799999999988877   79999987 666788899999999


Q ss_pred             EEEecCCC
Q 042434          486 CVSWNPKR  493 (517)
Q Consensus       486 ~v~~~~~~  493 (517)
                      +++|+|..
T Consensus       402 ~~~~~~~~  409 (415)
T 2hqs_A          402 FPAWSPYL  409 (415)
T ss_dssp             EEEECCCC
T ss_pred             CCcccccc
Confidence            99999975

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.96  E-value=8.7e-26  Score=225.77  Aligned_cols=303  Identities=11%  Similarity=0.089  Sum_probs=224.7

Q ss_pred             CcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEe--cCCCeeeEEEEeccCCCCEEEEEECC---
Q 042434          203 HCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKV--LEDSKLTLKHTLRSHQNPVSFVAWSP---  277 (517)
Q Consensus       203 ~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~--~~~~~~~~~~~~~~h~~~v~~l~~s~---  277 (517)
                      ....++....+++.++..+.. +.+++|+|+|++|++++.|++|.+||+  .++   +...++. +...+..++|+|   
T Consensus       160 ~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~---~~~~~i~-~g~~p~~va~sp~~~  234 (543)
T 1nir_A          160 QIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEP---TKVAEIK-IGIEARSVESSKFKG  234 (543)
T ss_dssp             EEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSC---EEEEEEE-CCSEEEEEEECCSTT
T ss_pred             eEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCC---cEEEEEe-cCCCcceEEeCCCcC
Confidence            345566667788888874333 899999999999999999999999999  544   4455555 456689999999   


Q ss_pred             -CCCeEEEEeC-CCeEEEEECCCCcEEEEeCCC-----------CCceEEEEEeCCCCeE-EEeeCCCceeEEEEeCCCC
Q 042434          278 -DDTKLLTCGN-AEVLKLWDVETGICKHTFGDH-----------GFIVSSCAWFPDSKRL-VCGSSDTEKGIFMCDCDGN  343 (517)
Q Consensus       278 -~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~-----------~~~v~~i~~~~~~~~l-~~~~~d~~v~i~~~~~~~~  343 (517)
                       ||+++++++. +++|.+||..+++++..+..+           ...+.++.++|++..+ ++...++.  |++||....
T Consensus       235 ~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~--i~vvd~~~~  312 (543)
T 1nir_A          235 YEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGK--VLLVNYKDI  312 (543)
T ss_dssp             CTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTE--EEEEECTTS
T ss_pred             CCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCe--EEEEEecCC
Confidence             9999999885 899999999999998887542           2378999999987655 45556677  888887642


Q ss_pred             e-eEeeeCcCCCceEEEEEccCCCEEEEEe-CCCcEEEEECCCceEE-eec-----cCCCeeEEEEcCC-CCEEEEEe-C
Q 042434          344 E-IKAWRGTRIPKVLDLAVTPDGENLISVL-SDKDIRILNLGTYAER-VIS-----EEHPITSLSVSVD-CKNFIVNL-N  413 (517)
Q Consensus       344 ~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~-~~~-----~~~~i~~~~~s~~-~~~l~~~~-~  413 (517)
                      . +..........+.++.|+|+|+++++++ .+++|.+||..+++.. ...     |......+ ++|+ +..++++. .
T Consensus       313 ~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~  391 (543)
T 1nir_A          313 DNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLG  391 (543)
T ss_dssp             SSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSS
T ss_pred             CcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCC
Confidence            2 2211112234678899999999877655 5889999999998722 222     22222333 4677 55555554 5


Q ss_pred             CCeEEEEEcCCC------CccceEEeCcccCceEEEeecCCCCCcEEEEec-------CCCcEEEEecCCCcee-EEe--
Q 042434          414 SQEIHMWDVAGK------WEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGS-------ENSQIYIWNRRNSKPI-EIL--  477 (517)
Q Consensus       414 d~~i~~~d~~~~------~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-------~dg~i~iwd~~~~~~~-~~~--  477 (517)
                      +++|.+||+.+.      ++.+..+.++.....   .+.++|+|++|++++       .+++|.+||+.+++.. ..+  
T Consensus       392 d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~---~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v  468 (543)
T 1nir_A          392 DGSISLIGTDPKNHPQYAWKKVAELQGQGGGSL---FIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPI  468 (543)
T ss_dssp             SSEEEEEECCTTTCTTTBTSEEEEEECSCSCCC---CEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECH
T ss_pred             CceEEEEEeCCCCCchhcCeEEEEEEcCCCCce---EEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeec
Confidence            799999999762      477778887765533   344599999999987       2679999999999877 443  


Q ss_pred             ------cCCCCCeeEEEecCCCCcEEEEee----CCCcEEEeCCCCCCC
Q 042434          478 ------SGHSMTVNCVSWNPKRPKMLASAS----DDHTIRIWGPCQSSE  516 (517)
Q Consensus       478 ------~~h~~~v~~v~~~~~~~~~l~s~~----~dg~v~iw~~~~~~~  516 (517)
                            ..+...+..++|+|+|..++++..    .|+.|.|||..+++.
T Consensus       469 ~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~  517 (543)
T 1nir_A          469 AEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKL  517 (543)
T ss_dssp             HHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred             hhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceE
Confidence                  356788999999999955554432    479999999998764

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.95  E-value=6.3e-26  Score=226.79  Aligned_cols=275  Identities=10%  Similarity=0.095  Sum_probs=215.0

Q ss_pred             EECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEEC--CCCcEEEEeC
Q 042434          229 QFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDV--ETGICKHTFG  306 (517)
Q Consensus       229 ~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~--~~~~~~~~~~  306 (517)
                      +|+|++.++++++.|++|.+||..++   +...++..+.. +.+++|+|||++|++++.|++|.+||+  .+++++.++.
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~---~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~  219 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSK---KIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK  219 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTC---CEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCc---eEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe
Confidence            37899999999999999999999766   34456653333 899999999999999999999999999  8899888886


Q ss_pred             CCCCceEEEEEeC----CCCeEEEeeC-CCceeEEEEeCCCC-eeEeeeC----------cCCCceEEEEEccCCCE-EE
Q 042434          307 DHGFIVSSCAWFP----DSKRLVCGSS-DTEKGIFMCDCDGN-EIKAWRG----------TRIPKVLDLAVTPDGEN-LI  369 (517)
Q Consensus       307 ~~~~~v~~i~~~~----~~~~l~~~~~-d~~v~i~~~~~~~~-~~~~~~~----------~~~~~i~~~~~~~~~~~-l~  369 (517)
                       +...+.+++|+|    +|+++++++. +++  |.+||..+. .+..+..          +....+..+.++|++.. ++
T Consensus       220 -~g~~p~~va~sp~~~~dg~~l~v~~~~~~~--v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~v  296 (543)
T 1nir_A          220 -IGIEARSVESSKFKGYEDRYTIAGAYWPPQ--FAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIV  296 (543)
T ss_dssp             -CCSEEEEEEECCSTTCTTTEEEEEEEESSE--EEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEE
T ss_pred             -cCCCcceEEeCCCcCCCCCEEEEEEccCCe--EEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEE
Confidence             456789999999    9999999885 788  777887653 3344332          12336889999998765 55


Q ss_pred             EEeCCCcEEEEECCCce---EEeeccCCCeeEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCccceEEeC----cccCceE
Q 042434          370 SVLSDKDIRILNLGTYA---ERVISEEHPITSLSVSVDCKNFIVNL-NSQEIHMWDVAGKWEKPFKYTG----HSQNKYV  441 (517)
Q Consensus       370 ~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~----~~~~~~~  441 (517)
                      +...++.|.+||..+..   .........+..+.|+|+|+++++++ .++.|.+||..++ .....+..    |....  
T Consensus       297 s~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg-~l~~~i~~g~~ph~g~g--  373 (543)
T 1nir_A          297 NVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR-RLSALVDVGKTPHPGRG--  373 (543)
T ss_dssp             EETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT-EEEEEEECSSSBCCTTC--
T ss_pred             EECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCC-eEEEeeccCCCCCCCCC--
Confidence            66778999999998754   22445566788999999999877665 5889999999887 55555543    32211  


Q ss_pred             EEeecCCCC-CcEEEEec-CCCcEEEEecCC-------CceeEEecCCCCCeeEEEecCCCCcEEEEee-------CCCc
Q 042434          442 IRSCFGGLD-GTFIASGS-ENSQIYIWNRRN-------SKPIEILSGHSMTVNCVSWNPKRPKMLASAS-------DDHT  505 (517)
Q Consensus       442 i~~~~~s~~-~~~l~~~~-~dg~i~iwd~~~-------~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~-------~dg~  505 (517)
                      ...  ++|+ +.+++++. .|++|.+||+.+       ++++.++.+|.+.+..++++|++ ..|++++       .+++
T Consensus       374 ~~~--~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg-~~l~v~~~~~~~~~~~~~  450 (543)
T 1nir_A          374 ANF--VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKS-SHLYVDTTFNPDARISQS  450 (543)
T ss_dssp             EEE--EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTC-CEEEECCTTCSSHHHHTC
T ss_pred             ccc--CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCC-CcEEEecCCCCCcccCce
Confidence            111  2566 66677765 689999999998       89999999999999999999999 6788776       2789


Q ss_pred             EEEeCCCCCCC
Q 042434          506 IRIWGPCQSSE  516 (517)
Q Consensus       506 v~iw~~~~~~~  516 (517)
                      |.+||+.+++.
T Consensus       451 v~v~d~~~~~~  461 (543)
T 1nir_A          451 VAVFDLKNLDA  461 (543)
T ss_dssp             EEEEETTCTTS
T ss_pred             EEEEECCCCCC
Confidence            99999998764

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.95  E-value=6.8e-27  Score=226.94  Aligned_cols=282  Identities=14%  Similarity=0.143  Sum_probs=213.3

Q ss_pred             cCcEEEEEECCCCC-EEEEee----CCC----cEEEEEe--cCCCeeeEEEEeccCCCCEEEEEECC-------------
Q 042434          222 KNEVWFVQFSNNGE-YLASSS----SDC----SAIIWKV--LEDSKLTLKHTLRSHQNPVSFVAWSP-------------  277 (517)
Q Consensus       222 ~~~v~~~~~s~~~~-~l~t~~----~dg----~i~iw~~--~~~~~~~~~~~~~~h~~~v~~l~~s~-------------  277 (517)
                      ...+....|++.|. ++++|+    .||    .+++||+  .++... ....+.+|...+..+++++             
T Consensus        62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~  140 (415)
T 2hqs_A           62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVL-AQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG  140 (415)
T ss_dssp             GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEE-EEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred             ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEE-eeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence            45677788888764 666776    467    8999999  766532 2356788888888777764             


Q ss_pred             -CCCeEEEEeCC------CeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCC-ceeEEEEeCCCCeeEeee
Q 042434          278 -DDTKLLTCGNA------EVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDT-EKGIFMCDCDGNEIKAWR  349 (517)
Q Consensus       278 -~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~-~v~i~~~~~~~~~~~~~~  349 (517)
                       .+..++.++.+      +.|++||+.. .....+..|...+.+++|+|+|+.|++++.++ .-.|++||..+.....+.
T Consensus       141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~  219 (415)
T 2hqs_A          141 AFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA  219 (415)
T ss_dssp             CTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEE
T ss_pred             cCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEee
Confidence             25666666554      7999999975 44566768889999999999999999999874 233999999876666555


Q ss_pred             CcCCCceEEEEEccCCCEEE-EEeCCCc--EEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeC-CC--eEEEEEc
Q 042434          350 GTRIPKVLDLAVTPDGENLI-SVLSDKD--IRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLN-SQ--EIHMWDV  422 (517)
Q Consensus       350 ~~~~~~i~~~~~~~~~~~l~-~~~~dg~--i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~-d~--~i~~~d~  422 (517)
                      .+. ..+.+++|+|||+.|+ +++.++.  |++||+.++. .....+...+.+++|+|+|+++++++. ++  .|++||+
T Consensus       220 ~~~-~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~  298 (415)
T 2hqs_A          220 SFP-RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNI  298 (415)
T ss_dssp             CCS-SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred             cCC-CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEEC
Confidence            443 4799999999999887 5665554  9999998877 445566678999999999999998886 44  6778888


Q ss_pred             CCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCC---CcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEE
Q 042434          423 AGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSEN---SQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLAS  499 (517)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s  499 (517)
                      .++.  ...+..+..   .+..+.|+|+|++|++++.+   +.|++||+.+++.. .+..|. .+.+++|+|+| ..|++
T Consensus       299 ~~~~--~~~l~~~~~---~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg-~~l~~  370 (415)
T 2hqs_A          299 NGGA--PQRITWEGS---QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNG-TMVIY  370 (415)
T ss_dssp             TSSC--CEECCCSSS---EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTS-SEEEE
T ss_pred             CCCC--EEEEecCCC---cccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCC-CEEEE
Confidence            7652  233333322   34456679999999988764   58999999988764 455554 89999999999 67777


Q ss_pred             eeCCC---cEEEeCCCCC
Q 042434          500 ASDDH---TIRIWGPCQS  514 (517)
Q Consensus       500 ~~~dg---~v~iw~~~~~  514 (517)
                      ++.|+   .|++|++..+
T Consensus       371 ~s~~~~~~~l~~~d~~g~  388 (415)
T 2hqs_A          371 SSSQGMGSVLNLVSTDGR  388 (415)
T ss_dssp             EEEETTEEEEEEEETTSC
T ss_pred             EEcCCCccEEEEEECCCC
Confidence            77766   7999998754

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.95  E-value=2.6e-26  Score=240.80  Aligned_cols=282  Identities=11%  Similarity=0.077  Sum_probs=212.9

Q ss_pred             cCcEEEEEECCCCCEEEEeeC-CC-----cEEEEEecCCCeeeEEEEeccCC------------------------CCEE
Q 042434          222 KNEVWFVQFSNNGEYLASSSS-DC-----SAIIWKVLEDSKLTLKHTLRSHQ------------------------NPVS  271 (517)
Q Consensus       222 ~~~v~~~~~s~~~~~l~t~~~-dg-----~i~iw~~~~~~~~~~~~~~~~h~------------------------~~v~  271 (517)
                      ...|.+++|||||++|++++. |+     .|++||+.++..   ...+..+.                        ..|.
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  112 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQT---RLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIV  112 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCE---EEEECGGGTC--------------------CCEESC
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCce---eEccchhhcccccccccchhhhhhhhhhhccccCcc
Confidence            557899999999999999998 88     899999976643   23333332                        2378


Q ss_pred             EEEECCCCCeEEEEeCCCeEEEEECCCCc--EEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeee
Q 042434          272 FVAWSPDDTKLLTCGNAEVLKLWDVETGI--CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWR  349 (517)
Q Consensus       272 ~l~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~  349 (517)
                      +++|+|||++|++++. +.|.+||+.++.  ....+..+...+.+++|+|||++|++++.+ .  |++|+..+.......
T Consensus       113 ~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~-~--i~~~d~~~g~~~~~~  188 (741)
T 2ecf_A          113 DYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGR-N--LWVIDLASGRQMQLT  188 (741)
T ss_dssp             CCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETT-E--EEEEETTTTEEEECC
T ss_pred             eeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCC-c--EEEEecCCCCEEEec
Confidence            9999999999999886 899999999883  344566778889999999999999998854 4  999999876665544


Q ss_pred             CcCCCc----------------eEEEEEccCCCEEEEEeCCC---------------------------------cEEEE
Q 042434          350 GTRIPK----------------VLDLAVTPDGENLISVLSDK---------------------------------DIRIL  380 (517)
Q Consensus       350 ~~~~~~----------------i~~~~~~~~~~~l~~~~~dg---------------------------------~i~i~  380 (517)
                      ......                +..+.|+|||+.|++++.|+                                 .|++|
T Consensus       189 ~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~  268 (741)
T 2ecf_A          189 ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVI  268 (741)
T ss_dssp             CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEE
T ss_pred             cCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEE
Confidence            333221                47799999999999987765                                 78999


Q ss_pred             ECCC-ceEEee----ccCCCeeEEEEcCCCCEEEEEeC-----CCeEEEEEcCCCCccceEEeCcccC-ceEEEeecCCC
Q 042434          381 NLGT-YAERVI----SEEHPITSLSVSVDCKNFIVNLN-----SQEIHMWDVAGKWEKPFKYTGHSQN-KYVIRSCFGGL  449 (517)
Q Consensus       381 d~~~-~~~~~~----~~~~~i~~~~~s~~~~~l~~~~~-----d~~i~~~d~~~~~~~~~~~~~~~~~-~~~i~~~~~s~  449 (517)
                      |+.+ ++....    .+...+..++| |||+.+++++.     +..|++||+.++ .....+..+... ...+....|+|
T Consensus       269 d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~~~~~~sp  346 (741)
T 2ecf_A          269 SPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN-QQRVLAHETSPTWVPLHNSLRFLD  346 (741)
T ss_dssp             CSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC-CEEEEEEEECSSCCCCCSCCEECT
T ss_pred             ECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC-ceEEEEEcCCCCcCCcCCceEECC
Confidence            9988 763222    24567899999 99999997764     567999999876 333333333221 00133556799


Q ss_pred             CCcEEEEecCCCcEEEEecC-CCceeEEecCCCCCeeEE-EecCCCCcEEEEeeCCC--cEEEeCCCC
Q 042434          450 DGTFIASGSENSQIYIWNRR-NSKPIEILSGHSMTVNCV-SWNPKRPKMLASASDDH--TIRIWGPCQ  513 (517)
Q Consensus       450 ~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~h~~~v~~v-~~~~~~~~~l~s~~~dg--~v~iw~~~~  513 (517)
                      ||+++++++.||.+.+|.+. ++. ...+..|...|.++ .|+|++..++++++.|+  .+++|++..
T Consensus       347 dg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~  413 (741)
T 2ecf_A          347 DGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL  413 (741)
T ss_dssp             TSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred             CCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence            99999999999987777664 345 77888888889887 59999954556666666  899998764

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.95  E-value=1.2e-25  Score=204.07  Aligned_cols=193  Identities=12%  Similarity=0.067  Sum_probs=141.2

Q ss_pred             cEEEEEECCC----CCEEEEeeC--------------------CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECC--
Q 042434          224 EVWFVQFSNN----GEYLASSSS--------------------DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP--  277 (517)
Q Consensus       224 ~v~~~~~s~~----~~~l~t~~~--------------------dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~--  277 (517)
                      .|++++|+||    ++++++++.                    |+.|++|++..+.  +....+.+|...++.++|+|  
T Consensus       113 ~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG--~~~~s~~~~~~~v~~l~fs~~~  190 (356)
T 2w18_A          113 EIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDG--GGKENQFLMPPEETILTFAEVQ  190 (356)
T ss_dssp             EEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTS--CEEEEEEECCCSSCEEEEEEEE
T ss_pred             ceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCC--ceeeeeccCCCceeeEEeeccC
Confidence            5667777778    777877653                    7888888885432  34456667888888888888  


Q ss_pred             -CCCeEEEEeCCCeEEEEECCCCcEEEEeCCCC---CceEEEEEeCCCCeE------------EEeeCCCceeEEEEeCC
Q 042434          278 -DDTKLLTCGNAEVLKLWDVETGICKHTFGDHG---FIVSSCAWFPDSKRL------------VCGSSDTEKGIFMCDCD  341 (517)
Q Consensus       278 -~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~v~~i~~~~~~~~l------------~~~~~d~~v~i~~~~~~  341 (517)
                       ++.+|++++.|++|+|||+.+|++++++.+|.   ..+.+++|+|+|.++            ++|+.|++  +..|+..
T Consensus       191 g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~t--IklWd~~  268 (356)
T 2w18_A          191 GMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQ--LIVINPK  268 (356)
T ss_dssp             TSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEE--EEEEETT
T ss_pred             CCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcE--EEEEECC
Confidence             77999999999999999999999999997653   467788999999887            45677788  6778887


Q ss_pred             CCeeEe-e----eCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCe-eEEEEcCCCCEEEEEeC
Q 042434          342 GNEIKA-W----RGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPI-TSLSVSVDCKNFIVNLN  413 (517)
Q Consensus       342 ~~~~~~-~----~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i-~~~~~s~~~~~l~~~~~  413 (517)
                      +..... .    ...+...+.+..  .++..+++++.|++|++||+.+++  .....|...+ .+++|+|+|++|++|+.
T Consensus       269 tgk~l~v~~~~~p~Gh~~~~lsg~--~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~  346 (356)
T 2w18_A          269 TTLSVGVMLYCLPPGQAGRFLEGD--VKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQK  346 (356)
T ss_dssp             TTEEEEEEEECCCTTCCCCEEEEE--EETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECT
T ss_pred             CCEEEEEEEeeccCCCcceeEccc--cCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEEC
Confidence            654422 2    123323333333  347789999999999999999988  2333455544 46899999999999999


Q ss_pred             CCeEEEEEc
Q 042434          414 SQEIHMWDV  422 (517)
Q Consensus       414 d~~i~~~d~  422 (517)
                      |++|++||+
T Consensus       347 D~TIklWd~  355 (356)
T 2w18_A          347 DGNIFVYHY  355 (356)
T ss_dssp             TSCEEEEEE
T ss_pred             CCcEEEecC
Confidence            999999996

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.95  E-value=2.1e-25  Score=206.33  Aligned_cols=255  Identities=15%  Similarity=0.130  Sum_probs=197.7

Q ss_pred             EeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCC-CcEEEEeCCC-CCceEEEE
Q 042434          239 SSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVET-GICKHTFGDH-GFIVSSCA  316 (517)
Q Consensus       239 t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~-~~~v~~i~  316 (517)
                      .++.|+.|++||+.++..    ..+..|...|.+++|+|++++|++++ ++.|.+||+.+ ++.......+ ...+.+++
T Consensus        17 ~~~~~~~i~~~d~~~~~~----~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~   91 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKM----RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHG   91 (297)
T ss_dssp             -CCCCEEEEEEETTTTEE----EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCE
T ss_pred             CCCcceeEEEEeCCCCce----eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceE
Confidence            356789999999976532    23455789999999999999999976 78999999999 8877766555 47789999


Q ss_pred             EeCCCCeEEEee--CCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEE-EEeCCCcEEEEEC--CCce-EEee
Q 042434          317 WFPDSKRLVCGS--SDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLI-SVLSDKDIRILNL--GTYA-ERVI  390 (517)
Q Consensus       317 ~~~~~~~l~~~~--~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~--~~~~-~~~~  390 (517)
                      |+|+++++++++  .++...+|.++..+.....+....  .+..++|+|+++.++ ++..++.+.+|++  .+.. ....
T Consensus        92 ~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~  169 (297)
T 2ojh_A           92 ISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNL--PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLT  169 (297)
T ss_dssp             ECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSS--SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECC
T ss_pred             ECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCC--CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcc
Confidence            999999999998  446777999998876665555444  488899999999877 7778998899885  3444 4445


Q ss_pred             ccCCCeeEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCC---------
Q 042434          391 SEEHPITSLSVSVDCKNFIVNL-NSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSEN---------  460 (517)
Q Consensus       391 ~~~~~i~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---------  460 (517)
                      .+...+.+++|+|+++.+++++ .++.+.+|++.........+..+.   ..+..+.|+|+|++|++++.+         
T Consensus       170 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~  246 (297)
T 2ojh_A          170 HGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSA---YGDWFPHPSPSGDKVVFVSYDADVFDHPRD  246 (297)
T ss_dssp             CSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCS---EEEEEEEECTTSSEEEEEEEETTCCSCCSS
T ss_pred             cCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCC---cccCCeEECCCCCEEEEEEcCCCCCccccc
Confidence            5667899999999999888776 488999999863324444444443   345566779999999988876         


Q ss_pred             --CcEEEEecCCCce--eEEecCCCCCeeEEEecCCCCcEEEEeeCCC
Q 042434          461 --SQIYIWNRRNSKP--IEILSGHSMTVNCVSWNPKRPKMLASASDDH  504 (517)
Q Consensus       461 --g~i~iwd~~~~~~--~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg  504 (517)
                        +.|++||+.+++.  +..+.+|...+.+++|+|++ ..|++++.|.
T Consensus       247 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~  293 (297)
T 2ojh_A          247 LDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDG-DEFAYVRYFP  293 (297)
T ss_dssp             EEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTS-SEEEEEEECC
T ss_pred             CceEEEEEecCCCCceeeeccCCCCcccccceECCCC-CEEEEEEecc
Confidence              5699999998865  44455788899999999999 5666666543

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.94  E-value=2.1e-24  Score=204.25  Aligned_cols=270  Identities=12%  Similarity=0.102  Sum_probs=187.4

Q ss_pred             EEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCC-CeEEEEECC--CCcE--EEEeCCCCC
Q 042434          236 YLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNA-EVLKLWDVE--TGIC--KHTFGDHGF  310 (517)
Q Consensus       236 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-g~i~iwd~~--~~~~--~~~~~~~~~  310 (517)
                      .+++++.|+.|++|++........... ..|...+.+++|+|++++|++++.+ +.|.+|++.  +++.  +..+..+. 
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-   84 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-   84 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-
Confidence            444557899999999964433344443 3477789999999999999988886 899999997  5553  34444333 


Q ss_pred             ceEEEEEeCCCCeEEEeeC-CCceeEEEEeC-CCC--eeEeeeCcCCCceEEEEEccCCCEEEEEe-CCCcEEEEECCC-
Q 042434          311 IVSSCAWFPDSKRLVCGSS-DTEKGIFMCDC-DGN--EIKAWRGTRIPKVLDLAVTPDGENLISVL-SDKDIRILNLGT-  384 (517)
Q Consensus       311 ~v~~i~~~~~~~~l~~~~~-d~~v~i~~~~~-~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~-  384 (517)
                      .+.+++|+|+++++++++. ++.  +.+|+. .+.  ........ ...+.+++|+|+++.+++++ .++.|.+||+.+ 
T Consensus        85 ~~~~~~~s~dg~~l~~~~~~~~~--i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~  161 (343)
T 1ri6_A           85 SLTHISTDHQGQFVFVGSYNAGN--VSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDD  161 (343)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTE--EEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             CCcEEEEcCCCCEEEEEecCCCe--EEEEECCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCC
Confidence            7889999999998877765 777  555555 221  12222222 23588899999999888887 899999999987 


Q ss_pred             ceE------Eee-ccCCCeeEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCcc---ceEEeCcc---cCceEEEeecCCCC
Q 042434          385 YAE------RVI-SEEHPITSLSVSVDCKNFIVNL-NSQEIHMWDVAGKWEK---PFKYTGHS---QNKYVIRSCFGGLD  450 (517)
Q Consensus       385 ~~~------~~~-~~~~~i~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~~~~---~~~~~~~~---~~~~~i~~~~~s~~  450 (517)
                      +..      ... .....+..++|+|+++++++++ .++.|.+||+......   ........   .....+..+.++|+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~d  241 (343)
T 1ri6_A          162 GHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPD  241 (343)
T ss_dssp             SCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTT
T ss_pred             CceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCC
Confidence            542      112 2345788999999999876655 7899999999542111   11221111   11122334566999


Q ss_pred             CcEEE-EecCCCcEEEEecC--C--CceeEEecCCCCCeeEEEecCCCCcEEEEee-CCCcEEEeCCC
Q 042434          451 GTFIA-SGSENSQIYIWNRR--N--SKPIEILSGHSMTVNCVSWNPKRPKMLASAS-DDHTIRIWGPC  512 (517)
Q Consensus       451 ~~~l~-~~~~dg~i~iwd~~--~--~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~-~dg~v~iw~~~  512 (517)
                      |++++ ++..++.|++||+.  +  .+.+..+..+.. +.+++|+|++ ..|++++ .|+.|.+|+++
T Consensus       242 g~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg-~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          242 GRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSG-KYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             SSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTS-SEEEEECTTTCEEEEEEEE
T ss_pred             CCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCC-CEEEEecCCCCeEEEEEEc
Confidence            98777 45578999999998  3  345555655544 8999999999 5555555 78999999554

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.94  E-value=3.4e-24  Score=201.99  Aligned_cols=274  Identities=11%  Similarity=0.092  Sum_probs=194.4

Q ss_pred             EECCCCC-EEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeC-CCeEEEEECCCCcE-EEEe
Q 042434          229 QFSNNGE-YLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGN-AEVLKLWDVETGIC-KHTF  305 (517)
Q Consensus       229 ~~s~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-dg~i~iwd~~~~~~-~~~~  305 (517)
                      .|.++++ .+++++.++.|.+||..++..   ...+..+...+ +++|+|+++++++++. ++.|.+||+.+++. ...+
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~---~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~   79 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEI---LNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAI   79 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCE---EEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEE
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccce---eeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEec
Confidence            4556555 467778899999999976643   34444556667 9999999997776665 88999999999987 7677


Q ss_pred             CCCCCceEEEEEeCCCCeEEEeeCCC---ceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEE-eCCCc-EEEE
Q 042434          306 GDHGFIVSSCAWFPDSKRLVCGSSDT---EKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISV-LSDKD-IRIL  380 (517)
Q Consensus       306 ~~~~~~v~~i~~~~~~~~l~~~~~d~---~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~-i~i~  380 (517)
                      ..+..+..+++|+|++++++++..++   .  |++|+..+.......... ....+++|+|+|++++++ ..++. +.+|
T Consensus        80 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~--i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~  156 (331)
T 3u4y_A           80 QEGQSSMADVDITPDDQFAVTVTGLNHPFN--MQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRF  156 (331)
T ss_dssp             EECSSCCCCEEECTTSSEEEECCCSSSSCE--EEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEE
T ss_pred             ccCCCCccceEECCCCCEEEEecCCCCccc--EEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEE
Confidence            66666665599999999999655552   5  899998865543333222 357899999999865555 55588 9999


Q ss_pred             ECCCce------EEeeccCCCeeEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCcc---ceEEeCcccCceEEEeecCCCC
Q 042434          381 NLGTYA------ERVISEEHPITSLSVSVDCKNFIVNL-NSQEIHMWDVAGKWEK---PFKYTGHSQNKYVIRSCFGGLD  450 (517)
Q Consensus       381 d~~~~~------~~~~~~~~~i~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~~~~---~~~~~~~~~~~~~i~~~~~s~~  450 (517)
                      ++....      .........+..++|+|+|++++++. .++.|.+||+.++ ..   ...+.....    ...+.++|+
T Consensus       157 ~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~-~~~~~~~~~~~~~~----~~~~~~spd  231 (331)
T 3u4y_A          157 KIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNP-ENITLLNAVGTNNL----PGTIVVSRD  231 (331)
T ss_dssp             EECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSST-TSCEEEEEEECSSC----CCCEEECTT
T ss_pred             EECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCC-cccceeeeccCCCC----CceEEECCC
Confidence            987532      12234456689999999999766555 5889999999876 33   334433222    334556999


Q ss_pred             CcEEEEec-CCCcEEEEecCCCce--eEEecCC----CC---CeeEEEecCCCCcEEEEeeCCCcEEEeCCCCC
Q 042434          451 GTFIASGS-ENSQIYIWNRRNSKP--IEILSGH----SM---TVNCVSWNPKRPKMLASASDDHTIRIWGPCQS  514 (517)
Q Consensus       451 ~~~l~~~~-~dg~i~iwd~~~~~~--~~~~~~h----~~---~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~  514 (517)
                      |+++++++ .++.|.+||..+++.  +..+..+    ..   ...+++|+|++..+++++..++.|.+|++...
T Consensus       232 g~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~  305 (331)
T 3u4y_A          232 GSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK  305 (331)
T ss_dssp             SSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred             CCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence            99776554 578899999999887  4444322    22   23568999999545566667789999999764

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.94  E-value=3.3e-25  Score=213.83  Aligned_cols=203  Identities=13%  Similarity=0.173  Sum_probs=151.1

Q ss_pred             EEEeccccCcEEEEEECC--------CCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCC-CeEEEE
Q 042434          215 VQILTEHKNEVWFVQFSN--------NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDD-TKLLTC  285 (517)
Q Consensus       215 ~~~l~~h~~~v~~~~~s~--------~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~  285 (517)
                      +..+.||.+.|++++|+|        ||++||+|+.|++|+|||+.++   .....+..|..+|.+++|+|++ .+|+++
T Consensus       129 ~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~---~~~~~~~~~~~~v~~v~~~p~~~~~l~~~  205 (393)
T 4gq1_A          129 LGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE---GPILAGYPLSSPGISVQFRPSNPNQLIVG  205 (393)
T ss_dssp             ECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT---EEEEEEEECSSCEEEEEEETTEEEEEEEE
T ss_pred             ecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC---ceeeeecCCCCCcEEEEECCCCCceEEec
Confidence            345789999999999998        8899999999999999999765   3445667789999999999987 579999


Q ss_pred             eCCCeEEEEECCCCcEEEEe-------------------------CCCCCceEEEEEe-CCCCeEEEeeCCCceeEEEEe
Q 042434          286 GNAEVLKLWDVETGICKHTF-------------------------GDHGFIVSSCAWF-PDSKRLVCGSSDTEKGIFMCD  339 (517)
Q Consensus       286 ~~dg~i~iwd~~~~~~~~~~-------------------------~~~~~~v~~i~~~-~~~~~l~~~~~d~~v~i~~~~  339 (517)
                      +.||+|++||+.+++.....                         .+|...+.++.|+ |+++.+++++.|+.  +.+||
T Consensus       206 ~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~--i~vwd  283 (393)
T 4gq1_A          206 ERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGA--WLRWN  283 (393)
T ss_dssp             ETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSE--EEEEE
T ss_pred             CCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCC--EEEEE
Confidence            99999999999887654322                         3567788899987 79999999999999  77777


Q ss_pred             CCCCeeEeeeCcCC------------------CceEEEEEcc--CCCEEEEEeCCCcEEEEECCCce--EEeeccCCCee
Q 042434          340 CDGNEIKAWRGTRI------------------PKVLDLAVTP--DGENLISVLSDKDIRILNLGTYA--ERVISEEHPIT  397 (517)
Q Consensus       340 ~~~~~~~~~~~~~~------------------~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~  397 (517)
                      ............+.                  .......++|  ++.++++|+.||.|++||+.++.  .....+..+|.
T Consensus       284 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~  363 (393)
T 4gq1_A          284 LFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIV  363 (393)
T ss_dssp             C-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEE
T ss_pred             CccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEE
Confidence            65322211111110                  1122233443  33466778889999999998876  55667888999


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEEcC
Q 042434          398 SLSVSVDCKNFIVNLNSQEIHMWDVA  423 (517)
Q Consensus       398 ~~~~s~~~~~l~~~~~d~~i~~~d~~  423 (517)
                      +++|+|+|++|++++.+| +.+|.+.
T Consensus       364 svafspdG~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          364 DFCWHQDGSHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             EEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred             EEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence            999999999999998665 6666653

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.93  E-value=3.5e-24  Score=232.27  Aligned_cols=292  Identities=11%  Similarity=0.100  Sum_probs=197.0

Q ss_pred             CCCcccEEEeccccCcEEEEEECCCCCEEEEeeCC------CcEEEEEecCCCeeeEEEEeccCCCCE-------EEEEE
Q 042434          209 QIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSD------CSAIIWKVLEDSKLTLKHTLRSHQNPV-------SFVAW  275 (517)
Q Consensus       209 ~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d------g~i~iw~~~~~~~~~~~~~~~~h~~~v-------~~l~~  275 (517)
                      ...+.....+.+|.+.|.+++|||||++||+++.+      ..|++|+..++.    ...+..|...+       .+++|
T Consensus        39 ~~~gg~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~----~~~lt~~~~~~~~~~~~~~~~~~  114 (1045)
T 1k32_A           39 DLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE----IKRITYFSGKSTGRRMFTDVAGF  114 (1045)
T ss_dssp             ETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE----EEECCCCCEEEETTEECSEEEEE
T ss_pred             ECCCCcEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC----eEEcccCCCcccccccccccccC
Confidence            34455677888999999999999999999988653      378999986542    35678888888       99999


Q ss_pred             CCCCCeEEEEeCC------CeEEEEECCCCcEEE----------------------------------------------
Q 042434          276 SPDDTKLLTCGNA------EVLKLWDVETGICKH----------------------------------------------  303 (517)
Q Consensus       276 s~~~~~l~s~~~d------g~i~iwd~~~~~~~~----------------------------------------------  303 (517)
                      +|||+.+++++.+      ..|.+|++.+++...                                              
T Consensus       115 SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~  194 (1045)
T 1k32_A          115 DPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSG  194 (1045)
T ss_dssp             CTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETT
T ss_pred             CCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCC
Confidence            9999977777654      368888876654332                                              


Q ss_pred             ---EeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEE
Q 042434          304 ---TFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRIL  380 (517)
Q Consensus       304 ---~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  380 (517)
                         .+..|...+.++.|+++ ..+++++.++...+|.++..+.....+..+.  .+...+|+|+|+.++.+ .++.|++|
T Consensus       195 ~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~--~~~~~~~SpDG~~la~~-~~~~i~~~  270 (1045)
T 1k32_A          195 AFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT--DYYPRHLNTDGRRILFS-KGGSIYIF  270 (1045)
T ss_dssp             EEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC--SSCEEEEEESSSCEEEE-ETTEEEEE
T ss_pred             CeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC--CcceeeEcCCCCEEEEE-eCCEEEEe
Confidence               12345666778888887 6666777888888888887655444433322  23334555555544444 24455555


Q ss_pred             EC----------------------------------------------------CCce-EEeeccCC-CeeEEEEcCCCC
Q 042434          381 NL----------------------------------------------------GTYA-ERVISEEH-PITSLSVSVDCK  406 (517)
Q Consensus       381 d~----------------------------------------------------~~~~-~~~~~~~~-~i~~~~~s~~~~  406 (517)
                      |+                                                    .++. .....+.. .+..++|+ +|+
T Consensus       271 d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~  349 (1045)
T 1k32_A          271 NPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKV  349 (1045)
T ss_dssp             CTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEE
T ss_pred             cCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCC
Confidence            54                                                    3333 11122222 34444444 444


Q ss_pred             EEEEEeCCCeEE-EEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCee
Q 042434          407 NFIVNLNSQEIH-MWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVN  485 (517)
Q Consensus       407 ~l~~~~~d~~i~-~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~  485 (517)
                      .+++++.++.+. +||+.++.  ...+.++..   .+..+.|+|||++|++++.++.|++||+.+++....+.+|.+.+.
T Consensus       350 ~l~~~s~~~~l~~~~d~~~~~--~~~l~~~~~---~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~  424 (1045)
T 1k32_A          350 AFIHGTREGDFLGIYDYRTGK--AEKFEENLG---NVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMIT  424 (1045)
T ss_dssp             EEEEEETTEEEEEEEETTTCC--EEECCCCCC---SEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCC
T ss_pred             eEEEEECCCceEEEEECCCCC--ceEecCCcc---ceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCcc
Confidence            444444444455 55554431  112222322   245566799999999999999999999999998888878999999


Q ss_pred             EEEecCCCCcEEEEeeCCC----------cEEEeCCCCCC
Q 042434          486 CVSWNPKRPKMLASASDDH----------TIRIWGPCQSS  515 (517)
Q Consensus       486 ~v~~~~~~~~~l~s~~~dg----------~v~iw~~~~~~  515 (517)
                      +++|+|+| ..|++++.++          .|++||+.+++
T Consensus       425 ~~~~SpDG-~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~  463 (1045)
T 1k32_A          425 DFTISDNS-RFIAYGFPLKHGETDGYVMQAIHVYDMEGRK  463 (1045)
T ss_dssp             CEEECTTS-CEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred             ceEECCCC-CeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence            99999999 6777776644          89999998764

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.93  E-value=3.2e-24  Score=224.92  Aligned_cols=278  Identities=12%  Similarity=0.063  Sum_probs=203.9

Q ss_pred             EEEEEECCCCCEEEEeeCCCcEEEEEecCCC--eeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEE
Q 042434          225 VWFVQFSNNGEYLASSSSDCSAIIWKVLEDS--KLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICK  302 (517)
Q Consensus       225 v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~--~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~  302 (517)
                      |.+++|||||++|++++. +.|++||+.++.  ..   ..+..|...+.+++|+|||++|++++ ++.|++||+.+++..
T Consensus       111 v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~---~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~  185 (741)
T 2ecf_A          111 IVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAV---RQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQM  185 (741)
T ss_dssp             SCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSC---CBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEE
T ss_pred             cceeEECCCCCEEEEEeC-CcEEEEECCCCCcceE---EEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEE
Confidence            889999999999999886 899999997652  22   34667888899999999999999987 469999999998876


Q ss_pred             EEeCCCCCc----------------eEEEEEeCCCCeEEEeeCCC-------------------------------ceeE
Q 042434          303 HTFGDHGFI----------------VSSCAWFPDSKRLVCGSSDT-------------------------------EKGI  335 (517)
Q Consensus       303 ~~~~~~~~~----------------v~~i~~~~~~~~l~~~~~d~-------------------------------~v~i  335 (517)
                      .....+...                +.+++|+|||++|++++.|+                               .+.+
T Consensus       186 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l  265 (741)
T 2ecf_A          186 QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL  265 (741)
T ss_dssp             ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred             EeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence            655444332                47799999999999987664                               2358


Q ss_pred             EEEeCCC-CeeEeeeC--cCCCceEEEEEccCCCEEEEEeC-----CCcEEEEECCCceEE-ee-ccCC----CeeEEEE
Q 042434          336 FMCDCDG-NEIKAWRG--TRIPKVLDLAVTPDGENLISVLS-----DKDIRILNLGTYAER-VI-SEEH----PITSLSV  401 (517)
Q Consensus       336 ~~~~~~~-~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~-~~-~~~~----~i~~~~~  401 (517)
                      ++||..+ ........  .+...+..++| |||+.|++++.     +..|++||+.++... .. .+..    .+..++|
T Consensus       266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~  344 (741)
T 2ecf_A          266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRF  344 (741)
T ss_dssp             EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEE
T ss_pred             EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEE
Confidence            9999877 66554432  24457899999 99999987764     567999999987722 22 2221    4568999


Q ss_pred             cCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEee-cCCCCCcEEE-EecCCC--cEEEEecCC-CceeEE
Q 042434          402 SVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSC-FGGLDGTFIA-SGSENS--QIYIWNRRN-SKPIEI  476 (517)
Q Consensus       402 s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~-~~s~~~~~l~-~~~~dg--~i~iwd~~~-~~~~~~  476 (517)
                      +|||+.++++..++.+.+|.+..... ...+..+...   +..+ .++|+|+.|+ +++.++  .+++|++.. +.....
T Consensus       345 spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~---v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~  420 (741)
T 2ecf_A          345 LDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWS---VDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQR  420 (741)
T ss_dssp             CTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSC---EEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEE
T ss_pred             CCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceE---EEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeee
Confidence            99999888888899888887653223 4445444333   3333 4689998775 455555  899999864 666677


Q ss_pred             ecCCCCCeeEEEecCCCCcEEEEeeCC---CcEEEeCCCC
Q 042434          477 LSGHSMTVNCVSWNPKRPKMLASASDD---HTIRIWGPCQ  513 (517)
Q Consensus       477 ~~~h~~~v~~v~~~~~~~~~l~s~~~d---g~v~iw~~~~  513 (517)
                      +.. ...+.+++|+|++..++++++..   +.+.+|+...
T Consensus       421 l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~  459 (741)
T 2ecf_A          421 LSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANG  459 (741)
T ss_dssp             CCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTS
T ss_pred             ccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCC
Confidence            765 67789999999995444444443   4578887643

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.93  E-value=8.5e-24  Score=220.44  Aligned_cols=282  Identities=11%  Similarity=0.054  Sum_probs=204.2

Q ss_pred             CcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCC----
Q 042434          223 NEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVET----  298 (517)
Q Consensus       223 ~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~----  298 (517)
                      ..|.+++|||| +.++.+. ++.|++||+.++.   . ..+..+...+.+++|+|||++|+++ .++.|++||+.+    
T Consensus        82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~---~-~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~  154 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARK---V-TYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEG  154 (706)
T ss_dssp             CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTE---E-EEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSC
T ss_pred             cCceeEEECCC-CeEEEEE-CCEEEEEECCCCc---e-EEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCccccc
Confidence            56999999999 6666553 5999999997552   2 2344567788999999999999985 689999999998    


Q ss_pred             -CcEEEEeCCCCCc--------------eEEEEEeCCCCeEEEeeCC-------------------------------Cc
Q 042434          299 -GICKHTFGDHGFI--------------VSSCAWFPDSKRLVCGSSD-------------------------------TE  332 (517)
Q Consensus       299 -~~~~~~~~~~~~~--------------v~~i~~~~~~~~l~~~~~d-------------------------------~~  332 (517)
                       ++.......+...              +.++.|+|||++|++++.|                               +.
T Consensus       155 ~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~  234 (706)
T 2z3z_A          155 MSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHH  234 (706)
T ss_dssp             CCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCE
T ss_pred             CCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCe
Confidence             8776655444332              4789999999999998732                               34


Q ss_pred             eeEEEEeCCCCeeEeeeC--cCCCceEEEEEccCCCEEEEEeCCC-----cEEEEECCCc-eE-Eee--ccCC---CeeE
Q 042434          333 KGIFMCDCDGNEIKAWRG--TRIPKVLDLAVTPDGENLISVLSDK-----DIRILNLGTY-AE-RVI--SEEH---PITS  398 (517)
Q Consensus       333 v~i~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~-~~-~~~--~~~~---~i~~  398 (517)
                      ..+++||..+........  .+...+.+++|+|||+.+++++.++     .|++||+.++ .. ...  ....   .+..
T Consensus       235 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~  314 (706)
T 2z3z_A          235 VTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHP  314 (706)
T ss_dssp             EEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSC
T ss_pred             eEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCC
Confidence            569999998776554432  3345789999999999999887775     8999999988 42 222  1111   2467


Q ss_pred             EEEcC--CCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEec-CCC----cEEEEecCCC
Q 042434          399 LSVSV--DCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGS-ENS----QIYIWNRRNS  471 (517)
Q Consensus       399 ~~~s~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg----~i~iwd~~~~  471 (517)
                      ++|+|  +|++++++..++.+++|++.........+..+...  ......|+|+|+.|+.++ .++    .|+.||..++
T Consensus       315 ~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~--v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~  392 (706)
T 2z3z_A          315 LTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWE--VTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG  392 (706)
T ss_dssp             CEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSC--EEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCC
T ss_pred             ceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeE--EEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCC
Confidence            89999  99999999899999999876322444445444332  122256699998776554 444    6777888777


Q ss_pred             ceeEEecCCCCCeeEEEecCCCCcEEEEeeCC---CcEEEeCCCCCC
Q 042434          472 KPIEILSGHSMTVNCVSWNPKRPKMLASASDD---HTIRIWGPCQSS  515 (517)
Q Consensus       472 ~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~d---g~v~iw~~~~~~  515 (517)
                      + ...+. |...+.+++|+|++..++++++.+   +.|++||+.+++
T Consensus       393 ~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          393 K-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             C-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             C-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence            6 44444 677899999999994344444444   569999987764

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.93  E-value=2.9e-24  Score=224.69  Aligned_cols=324  Identities=11%  Similarity=0.042  Sum_probs=216.3

Q ss_pred             cccccCCCCCccccccCC-CcccccCCCcccEEEeccccC---cEEEEEECCCCCEEEEeeCC---------CcEEEEEe
Q 042434          185 IDSCQYHNSSVAISLYED-HCCGRDQIPTETVQILTEHKN---EVWFVQFSNNGEYLASSSSD---------CSAIIWKV  251 (517)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~h~~---~v~~~~~s~~~~~l~t~~~d---------g~i~iw~~  251 (517)
                      ...+.+.++...+....+ ....|+....+....+.+|..   .|.+++|||||++|++++.+         +.+.+||+
T Consensus        19 ~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~   98 (723)
T 1xfd_A           19 DPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKI   98 (723)
T ss_dssp             CCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEES
T ss_pred             ccccEEcCCCcEEEEeCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEEC
Confidence            344455555442222233 344566666677777877775   49999999999999999764         78889999


Q ss_pred             cCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCce------------------E
Q 042434          252 LEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIV------------------S  313 (517)
Q Consensus       252 ~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v------------------~  313 (517)
                      .++.. ..+....+|...+.+++|||||+.|++++. +.|++||+.+++.......+...+                  .
T Consensus        99 ~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~  176 (723)
T 1xfd_A           99 PHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHI  176 (723)
T ss_dssp             SSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSE
T ss_pred             CCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcc
Confidence            86643 222223345556899999999999999876 799999999988777665544333                  7


Q ss_pred             EEEEeCCCCeEEEeeCCC--------------------------------ceeEEEEeCCCCee-EeeeCc-----CCCc
Q 042434          314 SCAWFPDSKRLVCGSSDT--------------------------------EKGIFMCDCDGNEI-KAWRGT-----RIPK  355 (517)
Q Consensus       314 ~i~~~~~~~~l~~~~~d~--------------------------------~v~i~~~~~~~~~~-~~~~~~-----~~~~  355 (517)
                      +++|+|||+.|++++.++                                ...+++||..+... ..+..+     +...
T Consensus       177 ~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~  256 (723)
T 1xfd_A          177 AHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYY  256 (723)
T ss_dssp             EEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEE
T ss_pred             eEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccce
Confidence            899999999999987553                                22589999886653 444332     1347


Q ss_pred             eEEEEEccCCCEEEEEeC----CCcEEEEECCCceEEe-e--ccCCCe----eEEEEcCCCCEEEEE--eCCC------e
Q 042434          356 VLDLAVTPDGENLISVLS----DKDIRILNLGTYAERV-I--SEEHPI----TSLSVSVDCKNFIVN--LNSQ------E  416 (517)
Q Consensus       356 i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~-~--~~~~~i----~~~~~s~~~~~l~~~--~~d~------~  416 (517)
                      +..++|+|||+.+++...    +..|++||+.+++... .  .+...+    ..++|+|||+.++..  ..++      .
T Consensus       257 ~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~  336 (723)
T 1xfd_A          257 ITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYH  336 (723)
T ss_dssp             EEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEE
T ss_pred             eEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeE
Confidence            889999999998876653    3579999998877222 1  222333    378999999987754  4566      5


Q ss_pred             EEEEE-cCCCCc--cceEEeCcccCceEEEeecCCCCCcEEEEecCC---CcEEEEecCCCc--eeEEecC---CCCCee
Q 042434          417 IHMWD-VAGKWE--KPFKYTGHSQNKYVIRSCFGGLDGTFIASGSEN---SQIYIWNRRNSK--PIEILSG---HSMTVN  485 (517)
Q Consensus       417 i~~~d-~~~~~~--~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~--~~~~~~~---h~~~v~  485 (517)
                      |.+|| ..++ .  ....+......  ......|+|||+.|+..+.+   +.+++|++....  ....+..   |...+.
T Consensus       337 l~~~d~~~~~-~~~~~~~l~~~~~~--~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~  413 (723)
T 1xfd_A          337 ITVSSSQPNS-SNDNIQSITSGDWD--VTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYF  413 (723)
T ss_dssp             EEEECSSCCS-SSCCCCBSCCSSSC--EEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCC
T ss_pred             EEEEeccCCC-CccceeEeecCCeE--EEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeE
Confidence            67777 3333 2  02333322111  22334579999998766554   789999876432  3444443   677789


Q ss_pred             EEEecCCCCcEEEEeeCCC--cEEEeCCCC
Q 042434          486 CVSWNPKRPKMLASASDDH--TIRIWGPCQ  513 (517)
Q Consensus       486 ~v~~~~~~~~~l~s~~~dg--~v~iw~~~~  513 (517)
                      .++|+|++..++++++..+  ...+++..+
T Consensus       414 ~~~~spdg~~l~~~~~~~~~p~~~~~~~~~  443 (723)
T 1xfd_A          414 SASFSHSMDFFLLKCEGPGVPMVTVHNTTD  443 (723)
T ss_dssp             EEEECTTSSEEEEECCSSSSCCEEEEETTT
T ss_pred             EEEECCCCCEEEEEccCCCCCeEEEEECCC
Confidence            9999999955555555444  233444433

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.93  E-value=9e-25  Score=228.50  Aligned_cols=280  Identities=15%  Similarity=0.138  Sum_probs=197.2

Q ss_pred             cEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCC---CEEEEEECCCCCeEEEEeCC---------CeE
Q 042434          224 EVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQN---PVSFVAWSPDDTKLLTCGNA---------EVL  291 (517)
Q Consensus       224 ~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~---~v~~l~~s~~~~~l~s~~~d---------g~i  291 (517)
                      .+.+++|+|||+++++ +.||+|++||..++..   ...+..|..   .|.+++|||||++|++++.+         +.+
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~---~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i   93 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTS---TVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYY   93 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCC---EEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEE
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcE---EEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeE
Confidence            4567899999998776 7899999999987643   344555654   49999999999999998764         788


Q ss_pred             EEEECCCCcEEEEeC---CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCC--------------
Q 042434          292 KLWDVETGICKHTFG---DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIP--------------  354 (517)
Q Consensus       292 ~iwd~~~~~~~~~~~---~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~--------------  354 (517)
                      .+||+.+++. ..+.   .+...+.+++|+|||+.|++++. +.  |++|+..+.........+..              
T Consensus        94 ~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~--i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~e  169 (723)
T 1xfd_A           94 VLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NN--IYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEE  169 (723)
T ss_dssp             EEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TE--EEEESSSSSCCEEEECCCBTTTEEEEECCHHHHH
T ss_pred             EEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-Ce--EEEEECCCCceEEEecCCCCCceECcccceeEEE
Confidence            8999999876 3333   34445889999999999999887 44  99999887555444333222              


Q ss_pred             ----ceEEEEEccCCCEEEEEeCCC----------------------------------cEEEEECCCceE-Eeec-c--
Q 042434          355 ----KVLDLAVTPDGENLISVLSDK----------------------------------DIRILNLGTYAE-RVIS-E--  392 (517)
Q Consensus       355 ----~i~~~~~~~~~~~l~~~~~dg----------------------------------~i~i~d~~~~~~-~~~~-~--  392 (517)
                          .+.+++|+|||+.|++++.++                                  .|++||+.++.. .... +  
T Consensus       170 e~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~  249 (723)
T 1xfd_A          170 EILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDD  249 (723)
T ss_dssp             TTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCC
T ss_pred             EeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCcc
Confidence                237899999999999887553                                  799999988762 2222 2  


Q ss_pred             ----CCCeeEEEEcCCCCEEEEEeC----CCeEEEEEcCCCCccceEEeCcc-cCceE-EEeecCCCCCcEEEE--ecCC
Q 042434          393 ----EHPITSLSVSVDCKNFIVNLN----SQEIHMWDVAGKWEKPFKYTGHS-QNKYV-IRSCFGGLDGTFIAS--GSEN  460 (517)
Q Consensus       393 ----~~~i~~~~~s~~~~~l~~~~~----d~~i~~~d~~~~~~~~~~~~~~~-~~~~~-i~~~~~s~~~~~l~~--~~~d  460 (517)
                          ...+..++|+|||+.+++...    +..|++||+.++ .....+..+. ..... .....|+|||+.|+.  +..+
T Consensus       250 ~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~  328 (723)
T 1xfd_A          250 PRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTG-VCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQ  328 (723)
T ss_dssp             GGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTC-CEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECC
T ss_pred             CCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCC-cceEEEEeccCCEEeccCCCceEcCCCCeEEEEEeccc
Confidence                456889999999998877653    357999999876 3333332221 11110 024556999997765  4456


Q ss_pred             C------cEEEEe-cCCCc--eeEEecCCCCCeeE-EEecCCCCcEEEEee-CC--CcEEEeCCCC
Q 042434          461 S------QIYIWN-RRNSK--PIEILSGHSMTVNC-VSWNPKRPKMLASAS-DD--HTIRIWGPCQ  513 (517)
Q Consensus       461 g------~i~iwd-~~~~~--~~~~~~~h~~~v~~-v~~~~~~~~~l~s~~-~d--g~v~iw~~~~  513 (517)
                      +      .|++|| ..++.  +...+..+...+.. ++|+|++ ..|+..+ .+  +.+++|++..
T Consensus       329 ~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~l~~~~~  393 (723)
T 1xfd_A          329 GGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKG-NKIYFLSTEDLPRRRQLYSANT  393 (723)
T ss_dssp             SSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTT-TEEEEEESSSCTTCCEEEEECS
T ss_pred             CCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCC-CEEEEEEcCCCCcceEEEEEeC
Confidence            6      577788 34444  15555544445554 6999999 5665444 44  7899998864

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.93  E-value=1.2e-22  Score=193.23  Aligned_cols=269  Identities=9%  Similarity=0.038  Sum_probs=201.0

Q ss_pred             ccCcEEEEEECCCCCEEEEeeC-------CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEE-EeCCCeEE
Q 042434          221 HKNEVWFVQFSNNGEYLASSSS-------DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLT-CGNAEVLK  292 (517)
Q Consensus       221 h~~~v~~~~~s~~~~~l~t~~~-------dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s-~~~dg~i~  292 (517)
                      ....+..++|+|+|+++++++.       ++.|.+||..++...   ..+.. ...+..++|+|+++++++ ...++.|.
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~---~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~  114 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVT---QAIHN-DLKPFGATINNTTQTLWFGNTVNSAVT  114 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEE---EEEEE-SSCCCSEEEETTTTEEEEEETTTTEEE
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEE---EEEec-CCCcceEEECCCCCEEEEEecCCCEEE
Confidence            4567889999999998888774       568999999766433   33332 344788999999986654 45579999


Q ss_pred             EEECCCCcEEEEeCCCCC---------ceEEEEEeCCCCeEEEeeC--CCceeEEEEeCCCCeeEeeeCcCCCceEEEEE
Q 042434          293 LWDVETGICKHTFGDHGF---------IVSSCAWFPDSKRLVCGSS--DTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAV  361 (517)
Q Consensus       293 iwd~~~~~~~~~~~~~~~---------~v~~i~~~~~~~~l~~~~~--d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~  361 (517)
                      +||..+++.+..+..+..         .+.+++|+|+++.+++++.  ++.  |+.||..+.............+.+++|
T Consensus       115 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~--i~~~d~~~~~~~~~~~~~~~~~~~~~~  192 (353)
T 3vgz_A          115 AIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESV--IWVVDGGNIKLKTAIQNTGKMSTGLAL  192 (353)
T ss_dssp             EEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCE--EEEEETTTTEEEEEECCCCTTCCCCEE
T ss_pred             EEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCce--EEEEcCCCCceEEEecCCCCccceEEE
Confidence            999999998887765432         2788999999998888763  566  999999876654443323335788999


Q ss_pred             ccCCCEEEEEeCCCcEEEEECCCceEE-eec-----cCCCeeEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCccceEEeC
Q 042434          362 TPDGENLISVLSDKDIRILNLGTYAER-VIS-----EEHPITSLSVSVDCKNFIVNLN-SQEIHMWDVAGKWEKPFKYTG  434 (517)
Q Consensus       362 ~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~-----~~~~i~~~~~s~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~  434 (517)
                      +|+++.+++++.++.|.+||..+++.. ...     +...+..++|+|++++++++.. ++.|.+||+.++ .....+..
T Consensus       193 s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~~  271 (353)
T 3vgz_A          193 DSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG-NILAKVAA  271 (353)
T ss_dssp             ETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC-CEEEEEEC
T ss_pred             CCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC-cEEEEEEc
Confidence            999999999999999999999988722 221     3445778999999998777765 589999999776 44444443


Q ss_pred             cccCceEEEeecCCCCCcEEEEec-CCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeC
Q 042434          435 HSQNKYVIRSCFGGLDGTFIASGS-ENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASD  502 (517)
Q Consensus       435 ~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~  502 (517)
                      ...     ..+.++|+|+++++++ .++.|.+||..+++.+..+..+ ..+.+++|+|++..++++...
T Consensus       272 ~~~-----~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          272 PES-----LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             SSC-----CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEEC
T ss_pred             CCC-----ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEcc
Confidence            222     2344589998665554 6899999999999998888754 478999999999434444443

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.93  E-value=9.7e-24  Score=199.20  Aligned_cols=266  Identities=11%  Similarity=0.030  Sum_probs=194.2

Q ss_pred             CEEEEeeCCCcEEEEEecCCCeeeEEEEeccCC-C-CEEEEEECCCCCeEE-EEeCCCeEEEEECCCCcEEEEeCCC---
Q 042434          235 EYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQ-N-PVSFVAWSPDDTKLL-TCGNAEVLKLWDVETGICKHTFGDH---  308 (517)
Q Consensus       235 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~-~-~v~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~---  308 (517)
                      +++++++.++.|.+||..++.   ....+.... . .+..++|+|+++.++ +++.++.|.+||+.+++.+..+...   
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~---~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~   78 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMA---VDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE   78 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTE---EEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT
T ss_pred             cEEEEcCCCCeEEEEECCCCc---EEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcc
Confidence            578999999999999997653   334443222 2 478899999998765 5556789999999999988766432   


Q ss_pred             --CCceEEEEEeCCCCeEEEee------------CCCceeEEEEeCCCCeeE-eeeCcCCCceEEEEEccCCCEEEEEeC
Q 042434          309 --GFIVSSCAWFPDSKRLVCGS------------SDTEKGIFMCDCDGNEIK-AWRGTRIPKVLDLAVTPDGENLISVLS  373 (517)
Q Consensus       309 --~~~v~~i~~~~~~~~l~~~~------------~d~~v~i~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~  373 (517)
                        ...+.+++|+|+++++++++            .++.  |++||..+.... .+...  ..+.+++|+|++++++++  
T Consensus        79 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~--i~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~--  152 (337)
T 1pby_B           79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTR--VALYDAETLSRRKAFEAP--RQITMLAWARDGSKLYGL--  152 (337)
T ss_dssp             EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCE--EEEEETTTTEEEEEEECC--SSCCCEEECTTSSCEEEE--
T ss_pred             cccccccceEECCCCCEEEEEecccccccccccccCce--EEEEECCCCcEEEEEeCC--CCcceeEECCCCCEEEEe--
Confidence              12567899999999998886            4566  889998865543 33332  357889999999988887  


Q ss_pred             CCcEEEEECCCceEE-eeccCCCeeEEEEcCCCCEEEEEeCCC------------------------eEEEEEcCCCCcc
Q 042434          374 DKDIRILNLGTYAER-VISEEHPITSLSVSVDCKNFIVNLNSQ------------------------EIHMWDVAGKWEK  428 (517)
Q Consensus       374 dg~i~i~d~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~d~------------------------~i~~~d~~~~~~~  428 (517)
                      ++.|.+||+.+++.. ..........+.|+|+++.+++....+                        .|.+||+.++...
T Consensus       153 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  232 (337)
T 1pby_B          153 GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA  232 (337)
T ss_dssp             SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE
T ss_pred             CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce
Confidence            688999999988732 222222122347899988776554332                        4689999876333


Q ss_pred             ceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEE
Q 042434          429 PFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRI  508 (517)
Q Consensus       429 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~i  508 (517)
                      ...+..+..   .+..+.++|+|++++++  ++.|++||+.+++.+..+.. ...+.+++|+|++ ..+++++.|+.|++
T Consensus       233 ~~~~~~~~~---~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg-~~l~~~~~~~~i~v  305 (337)
T 1pby_B          233 MREVRIMDV---FYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL-PHSYYSVNVSTDG-STVWLGGALGDLAA  305 (337)
T ss_dssp             EEEEEECSS---CEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECTTS-CEEEEESBSSEEEE
T ss_pred             EeecCCCCC---ceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC-CCceeeEEECCCC-CEEEEEcCCCcEEE
Confidence            222222222   23345669999999988  79999999999998888764 3567899999999 67777888999999


Q ss_pred             eCCCCCCC
Q 042434          509 WGPCQSSE  516 (517)
Q Consensus       509 w~~~~~~~  516 (517)
                      ||+.+++.
T Consensus       306 ~d~~~~~~  313 (337)
T 1pby_B          306 YDAETLEK  313 (337)
T ss_dssp             EETTTCCE
T ss_pred             EECcCCcE
Confidence            99988763

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.92  E-value=2.2e-22  Score=190.88  Aligned_cols=271  Identities=11%  Similarity=0.065  Sum_probs=181.7

Q ss_pred             CCCcEEEEEecCC-CeeeEEEEeccCCCCEEEEEECCCCCeEEEEeC---CCeEEEEECCCCc--EEEEeCCCCCceEEE
Q 042434          242 SDCSAIIWKVLED-SKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGN---AEVLKLWDVETGI--CKHTFGDHGFIVSSC  315 (517)
Q Consensus       242 ~dg~i~iw~~~~~-~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~---dg~i~iwd~~~~~--~~~~~~~~~~~v~~i  315 (517)
                      .++.|.+|+++.. ....... ...+...+..++|+|||+ |++++.   ++.|.+|++.+++  .+..+..+...+..+
T Consensus        14 ~~~~i~v~~~d~~tg~~~~~~-~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~   91 (347)
T 3hfq_A           14 TSQGIYQGTLDTTAKTLTNDG-LLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYV   91 (347)
T ss_dssp             SCCEEEEEEEETTTTEEEEEE-EEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEE
T ss_pred             CCCCEEEEEEcCCCCeEEEee-eeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEE
Confidence            3567889988643 2333323 234456778899999999 655544   6899999998776  334444567778899


Q ss_pred             EEeCCCCeEEEee-CCCceeEEEEeCCCCe--eEeeeCc--------CCCceEEEEEccCCCEEEEEeCCCcEEEEECC-
Q 042434          316 AWFPDSKRLVCGS-SDTEKGIFMCDCDGNE--IKAWRGT--------RIPKVLDLAVTPDGENLISVLSDKDIRILNLG-  383 (517)
Q Consensus       316 ~~~~~~~~l~~~~-~d~~v~i~~~~~~~~~--~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-  383 (517)
                      +|+|+|+++++++ .++.+.+|..+..+..  +......        ....+.+++|+|+|+.+++...++.|.+||+. 
T Consensus        92 a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~  171 (347)
T 3hfq_A           92 AVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSD  171 (347)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECT
T ss_pred             EECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECC
Confidence            9999999988888 6778444444332322  2222211        11248889999999966666678899999998 


Q ss_pred             CceEE-----eeccCCCeeEEEEcCCCCEEEEE-eCCCeEEEEEcCCCC-cc--ceEEeCccc---CceEEEeecCCCCC
Q 042434          384 TYAER-----VISEEHPITSLSVSVDCKNFIVN-LNSQEIHMWDVAGKW-EK--PFKYTGHSQ---NKYVIRSCFGGLDG  451 (517)
Q Consensus       384 ~~~~~-----~~~~~~~i~~~~~s~~~~~l~~~-~~d~~i~~~d~~~~~-~~--~~~~~~~~~---~~~~i~~~~~s~~~  451 (517)
                      ++...     .......+..++|+|+|++++++ ..++.+.+|++.... ..  .........   .......+.++|||
T Consensus       172 ~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG  251 (347)
T 3hfq_A          172 AGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDG  251 (347)
T ss_dssp             TSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTS
T ss_pred             CCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCC
Confidence            44311     12234467889999999976664 568899999986421 11  112222111   11235566779999


Q ss_pred             cEEE-EecCCCcEEEEecC---CCceeEEecCCCCCeeEEEecCCCCcEEEEee-CCCcEEEe--CCCCCC
Q 042434          452 TFIA-SGSENSQIYIWNRR---NSKPIEILSGHSMTVNCVSWNPKRPKMLASAS-DDHTIRIW--GPCQSS  515 (517)
Q Consensus       452 ~~l~-~~~~dg~i~iwd~~---~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~-~dg~v~iw--~~~~~~  515 (517)
                      ++|+ +...++.|.+|++.   ..+.+..+..+...+.+++|+|++ ++|++++ .++.|.+|  |..+++
T Consensus       252 ~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~d~~tg~  321 (347)
T 3hfq_A          252 HFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTE-AFVVVVNQNTDNATLYARDLTSGK  321 (347)
T ss_dssp             CEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTS-SEEEEEETTTTEEEEEEECTTTCC
T ss_pred             CEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCC-CEEEEEEcCCCcEEEEEEeCCCCe
Confidence            9874 55568999999987   235666677777778999999999 5666655 55899999  555554

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.92  E-value=2.5e-23  Score=225.53  Aligned_cols=284  Identities=13%  Similarity=0.020  Sum_probs=223.0

Q ss_pred             ccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEE
Q 042434          213 ETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLK  292 (517)
Q Consensus       213 ~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~  292 (517)
                      .....+.+|.+.+.++.|+++ .++++++.|+.+.||.+.....  ....+..|. .+...+|+|||+.|+++ .++.|.
T Consensus       194 ~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~--~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~  268 (1045)
T 1k32_A          194 GAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGK--DLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIY  268 (1045)
T ss_dssp             TEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSC--SCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEE
T ss_pred             CCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCC--cceEecCCC-CcceeeEcCCCCEEEEE-eCCEEE
Confidence            344556899999999999998 6777888899999998864221  123445554 46677999999999987 488999


Q ss_pred             EEECCCCcEEEEeCC-----------CCCceEEEEEe-CCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEE
Q 042434          293 LWDVETGICKHTFGD-----------HGFIVSSCAWF-PDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLA  360 (517)
Q Consensus       293 iwd~~~~~~~~~~~~-----------~~~~v~~i~~~-~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~  360 (517)
                      +||+.... +..+..           |...+.+++|+ |||+.+++++ ++.  ++.|+..+........+....+..++
T Consensus       269 ~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~  344 (1045)
T 1k32_A          269 IFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQ--AFIQDVSGTYVLKVPEPLRIRYVRRG  344 (1045)
T ss_dssp             EECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTE--EEEECTTSSBEEECSCCSCEEEEEEC
T ss_pred             EecCCceE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCE--EEEEcCCCCceEEccCCCcceEEeee
Confidence            99995544 335544           23468999999 9999999988 555  89999887666655444432789999


Q ss_pred             EccCCCEEEEEeCCCcEE-EEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccC
Q 042434          361 VTPDGENLISVLSDKDIR-ILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQN  438 (517)
Q Consensus       361 ~~~~~~~l~~~~~dg~i~-i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~  438 (517)
                      |+ +|+.++.++.++.+. +||+.+.. .....+...+..++|+|+|+++++++.++.|++||+.++ .......++...
T Consensus       345 ~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg-~~~~~~~~~~~~  422 (1045)
T 1k32_A          345 GD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG-KPTVIERSREAM  422 (1045)
T ss_dssp             SS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC-CEEEEEECSSSC
T ss_pred             Ec-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCC-ceEEeccCCCCC
Confidence            99 999999998888888 99998776 333355678999999999999999999999999999876 444444455443


Q ss_pred             ceEEEeecCCCCCcEEEEecCCC----------cEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEE
Q 042434          439 KYVIRSCFGGLDGTFIASGSENS----------QIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRI  508 (517)
Q Consensus       439 ~~~i~~~~~s~~~~~l~~~~~dg----------~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~i  508 (517)
                         +..+.|+|||++|++++.++          .|++||+.+++ +..+..|...+.+++|+|+| ..|++++.++...+
T Consensus       423 ---v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG-~~l~~~s~~~~~~~  497 (1045)
T 1k32_A          423 ---ITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADS-KNLYYLSYRSLDPS  497 (1045)
T ss_dssp             ---CCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTS-CEEEEEESCCCCCE
T ss_pred             ---ccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCC-CEEEEEecccCCcC
Confidence               34556699999999887654          89999999887 67778888889999999999 68888998888888


Q ss_pred             eCCC
Q 042434          509 WGPC  512 (517)
Q Consensus       509 w~~~  512 (517)
                      |+..
T Consensus       498 ~~~~  501 (1045)
T 1k32_A          498 PDRV  501 (1045)
T ss_dssp             ECSS
T ss_pred             cchh
Confidence            8754

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.92  E-value=3.4e-23  Score=215.90  Aligned_cols=280  Identities=12%  Similarity=0.064  Sum_probs=196.0

Q ss_pred             EEEEEECCCCCEEEEeeCCCcEEEEEecCCCee-eEEEEecc--------------CCCCEEEEEECCCCCeEEEEeCCC
Q 042434          225 VWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKL-TLKHTLRS--------------HQNPVSFVAWSPDDTKLLTCGNAE  289 (517)
Q Consensus       225 v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~-~~~~~~~~--------------h~~~v~~l~~s~~~~~l~s~~~dg  289 (517)
                      +..+.|+  |+.+++++.|+ | +||+.++... ........              +...|.+++|+|| ..++.+ .++
T Consensus        28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~~  101 (706)
T 2z3z_A           28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQG  101 (706)
T ss_dssp             CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ETT
T ss_pred             CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-ECC
Confidence            3346777  66677777788 8 9999877541 22211110              1156999999999 666655 459


Q ss_pred             eEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC-----CeeEeeeCcCCCc---------
Q 042434          290 VLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG-----NEIKAWRGTRIPK---------  355 (517)
Q Consensus       290 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~-----~~~~~~~~~~~~~---------  355 (517)
                      .|++||+.+++..... .+...+.+++|+|||+.|+++ .++.  |++|+..+     .............         
T Consensus       102 ~i~~~d~~~~~~~~l~-~~~~~~~~~~~SpdG~~la~~-~~~~--i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~  177 (706)
T 2z3z_A          102 GLVGFDMLARKVTYLF-DTNEETASLDFSPVGDRVAYV-RNHN--LYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQ  177 (706)
T ss_dssp             EEEEEETTTTEEEEEE-CCTTCCTTCEECTTSSEEEEE-ETTE--EEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGG
T ss_pred             EEEEEECCCCceEEcc-CCcccccCCcCCCCCCEEEEE-ECCe--EEEEecCcccccCCCcEEeccCCCCCeEcccchhh
Confidence            9999999988765544 566778899999999999985 5677  89999876     5544433322222         


Q ss_pred             -----eEEEEEccCCCEEEEEe---------------------------------CCCcEEEEECCCceEEee----ccC
Q 042434          356 -----VLDLAVTPDGENLISVL---------------------------------SDKDIRILNLGTYAERVI----SEE  393 (517)
Q Consensus       356 -----i~~~~~~~~~~~l~~~~---------------------------------~dg~i~i~d~~~~~~~~~----~~~  393 (517)
                           +.++.|+|||++|++++                                 .+..|++||+.++.....    .+.
T Consensus       178 ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~  257 (706)
T 2z3z_A          178 REFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKE  257 (706)
T ss_dssp             GCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTT
T ss_pred             hhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCc
Confidence                 47899999999999987                                 446799999998873322    244


Q ss_pred             CCeeEEEEcCCCCEEEEEeCCC-----eEEEEEcCCCCccceEEeCcccCc--eEEEeecCCC--CCcEEEEecCCCcEE
Q 042434          394 HPITSLSVSVDCKNFIVNLNSQ-----EIHMWDVAGKWEKPFKYTGHSQNK--YVIRSCFGGL--DGTFIASGSENSQIY  464 (517)
Q Consensus       394 ~~i~~~~~s~~~~~l~~~~~d~-----~i~~~d~~~~~~~~~~~~~~~~~~--~~i~~~~~s~--~~~~l~~~~~dg~i~  464 (517)
                      ..+..++|+|||+.+++++.++     .|.+||+.++. ....+.......  ..+..+.|+|  ||+++++++.||.++
T Consensus       258 ~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~-~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~  336 (706)
T 2z3z_A          258 KFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR-FVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNH  336 (706)
T ss_dssp             CEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCC-EEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCE
T ss_pred             eeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCc-eeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccE
Confidence            5689999999999999987765     89999998762 222222111111  1123456689  999999999999999


Q ss_pred             EEecC-CCceeEEecCCCCCeeE-EEecCCCCcEEEEeeCCC----cEEEeCCCCCC
Q 042434          465 IWNRR-NSKPIEILSGHSMTVNC-VSWNPKRPKMLASASDDH----TIRIWGPCQSS  515 (517)
Q Consensus       465 iwd~~-~~~~~~~~~~h~~~v~~-v~~~~~~~~~l~s~~~dg----~v~iw~~~~~~  515 (517)
                      +|++. ++..+..+..|...+.+ ++|+|++..++++++.++    .|..|++.+++
T Consensus       337 l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~  393 (706)
T 2z3z_A          337 LYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK  393 (706)
T ss_dssp             EEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred             EEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence            99876 67778888888888887 799999954555666655    67777776653

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.92  E-value=3.3e-22  Score=189.12  Aligned_cols=266  Identities=11%  Similarity=0.073  Sum_probs=185.4

Q ss_pred             ccccCcEEEEEECCCCCEEEEeeCC-CcEEEEEecC-CCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeC-CCeEEEEE
Q 042434          219 TEHKNEVWFVQFSNNGEYLASSSSD-CSAIIWKVLE-DSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGN-AEVLKLWD  295 (517)
Q Consensus       219 ~~h~~~v~~~~~s~~~~~l~t~~~d-g~i~iw~~~~-~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-dg~i~iwd  295 (517)
                      ..|...+.+++|+|+|++|++++.+ +.|.+|++.. .........+..+. .+.+++|+|+++++++++. ++.|.+||
T Consensus        34 ~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d  112 (343)
T 1ri6_A           34 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTR  112 (343)
T ss_dssp             EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEE
Confidence            3578889999999999999988876 9999999972 22334445555444 7899999999998877665 88999999


Q ss_pred             CC---CCcEEEEeCCCCCceEEEEEeCCCCeEEEee-CCCceeEEEEeCCC-CeeE-----eeeCcCCCceEEEEEccCC
Q 042434          296 VE---TGICKHTFGDHGFIVSSCAWFPDSKRLVCGS-SDTEKGIFMCDCDG-NEIK-----AWRGTRIPKVLDLAVTPDG  365 (517)
Q Consensus       296 ~~---~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~d~~v~i~~~~~~~-~~~~-----~~~~~~~~~i~~~~~~~~~  365 (517)
                      +.   +++....+.. ...+.+++|+|+++++++++ .++.  +++|+... ..+.     .........+..++|+|++
T Consensus       113 ~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~--v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg  189 (343)
T 1ri6_A          113 LEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDR--ICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNE  189 (343)
T ss_dssp             EETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTE--EEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTS
T ss_pred             CCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCE--EEEEEecCCCceeeecccccccCCCCCcceEEECCCC
Confidence            94   3445555543 34588999999999888887 7888  66777654 3332     2233333468889999999


Q ss_pred             CEEEEEe-CCCcEEEEECCC--ceE----Eee--cc----CCCeeEEEEcCCCCEEEEEe-CCCeEEEEEcCC--C-Ccc
Q 042434          366 ENLISVL-SDKDIRILNLGT--YAE----RVI--SE----EHPITSLSVSVDCKNFIVNL-NSQEIHMWDVAG--K-WEK  428 (517)
Q Consensus       366 ~~l~~~~-~dg~i~i~d~~~--~~~----~~~--~~----~~~i~~~~~s~~~~~l~~~~-~d~~i~~~d~~~--~-~~~  428 (517)
                      +++++++ .++.|.+||+..  +..    ...  ..    ...+..++|+|++++++++. .++.|.+||+..  + ...
T Consensus       190 ~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~  269 (343)
T 1ri6_A          190 QYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSK  269 (343)
T ss_dssp             SEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEE
T ss_pred             CEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEE
Confidence            9776555 789999999954  321    111  11    23466899999999887554 689999999973  2 122


Q ss_pred             ceEEeCcccCceEEEeecCCCCCcEEEEec-CCCcEEEEe--cCCCc--eeEEecCCCCCeeEEEecCCC
Q 042434          429 PFKYTGHSQNKYVIRSCFGGLDGTFIASGS-ENSQIYIWN--RRNSK--PIEILSGHSMTVNCVSWNPKR  493 (517)
Q Consensus       429 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iwd--~~~~~--~~~~~~~h~~~v~~v~~~~~~  493 (517)
                      ...+..+..    +..+.++|+|++|++++ .++.|.+|+  ..+++  .+..+.. .....+++|.|+.
T Consensus       270 ~~~~~~~~~----~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~-g~~p~~i~~~~~~  334 (343)
T 1ri6_A          270 EGFQPTETQ----PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV-GQGPMWVVVNAHE  334 (343)
T ss_dssp             EEEEECSSS----CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEEC-SSSCCEEEEEEEC
T ss_pred             eeeecCCCc----cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcccccc-CCCCeeEEEEccc
Confidence            222222221    44556699999888877 679999994  44664  3444443 2456677887654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.92  E-value=4.9e-23  Score=209.53  Aligned_cols=272  Identities=14%  Similarity=0.037  Sum_probs=196.0

Q ss_pred             ccCcEEEEEECCCCCEEEEeeC-CCcEEEEEecCCCeeeEEEEeccCC-CCEEEEEECCCCCeEEEEeC---CCeEEEEE
Q 042434          221 HKNEVWFVQFSNNGEYLASSSS-DCSAIIWKVLEDSKLTLKHTLRSHQ-NPVSFVAWSPDDTKLLTCGN---AEVLKLWD  295 (517)
Q Consensus       221 h~~~v~~~~~s~~~~~l~t~~~-dg~i~iw~~~~~~~~~~~~~~~~h~-~~v~~l~~s~~~~~l~s~~~---dg~i~iwd  295 (517)
                      +..+|++++|+|||++||+++. ||+++||++..+ .  . ..+..|. ..+.+++|+|| +.+++++.   +....+|.
T Consensus        20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g-~--~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~   94 (582)
T 3o4h_A           20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG-E--T-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFK   94 (582)
T ss_dssp             HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT-E--E-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEE
T ss_pred             hccchheeecCCCCCeEEEEEccCCceeEEEEcCC-C--c-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEE
Confidence            3567999999999999999887 999999998544 2  2 3455555 68999999999 77777665   45556654


Q ss_pred             CCC---CcEEEEeCCCCCceEEEEEeCCCCe-EEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEE
Q 042434          296 VET---GICKHTFGDHGFIVSSCAWFPDSKR-LVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISV  371 (517)
Q Consensus       296 ~~~---~~~~~~~~~~~~~v~~i~~~~~~~~-l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  371 (517)
                      +..   +... .+.... .+...+|+|+++. +++++.++.  +.+|+..+.....+.....   .+++|+|||+.++++
T Consensus        95 ~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~--~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~  167 (582)
T 3o4h_A           95 VNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDR--VALYALDGGGLRELARLPG---FGFVSDIRGDLIAGL  167 (582)
T ss_dssp             EETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSC--EEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEE
T ss_pred             EeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCC--ceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEE
Confidence            432   3333 343222 3446788888864 333334444  4477887766655554442   789999999999988


Q ss_pred             eCC----CcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCC--eEEEEEcCCCCccceEEeCcccCce----
Q 042434          372 LSD----KDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQ--EIHMWDVAGKWEKPFKYTGHSQNKY----  440 (517)
Q Consensus       372 ~~d----g~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~--~i~~~d~~~~~~~~~~~~~~~~~~~----  440 (517)
                      +.+    +.|++||+.++. .....+...+..++|+|||+.++++..++  .|++||+.++...  .+.++.....    
T Consensus       168 ~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~--~~~~~~~~~~~~~~  245 (582)
T 3o4h_A          168 GFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE--DLELPSKDFSSYRP  245 (582)
T ss_dssp             EEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE--ECCCSCSHHHHHCC
T ss_pred             EEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE--EccCCCcChhhhhh
Confidence            877    789999998877 55556677889999999999999888888  8999999876333  4444432211    


Q ss_pred             -EEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCC---cEEEeCCCC
Q 042434          441 -VIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDH---TIRIWGPCQ  513 (517)
Q Consensus       441 -~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg---~v~iw~~~~  513 (517)
                       ......|+|||.++++++.||.+++|++  |+...   .+.+.|.+++|+ ++ .++++++.+.   .+.+|+..+
T Consensus       246 ~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg-~~l~~~s~~~~p~~l~~~d~~~  315 (582)
T 3o4h_A          246 TAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RG-KLVTSHTSLSTPPRIVSLPSGE  315 (582)
T ss_dssp             SEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TT-EEEEEEEETTEEEEEEEETTCC
T ss_pred             ccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CC-EEEEEEcCCCCCCeEEEEcCCC
Confidence             1111226999999999999999999999  76554   345778999999 88 7888888774   477777653

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.91  E-value=1.1e-21  Score=184.66  Aligned_cols=287  Identities=11%  Similarity=0.061  Sum_probs=193.6

Q ss_pred             CCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeC-CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCC
Q 042434          202 DHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSS-DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDT  280 (517)
Q Consensus       202 ~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~-dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~  280 (517)
                      +....++....+....+..+...+ +++|+|+|+++++++. ++.|.+||..++..  ....+..+..+..+++|+|+++
T Consensus        20 ~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~s~dg~   96 (331)
T 3u4y_A           20 RRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP--KVVAIQEGQSSMADVDITPDDQ   96 (331)
T ss_dssp             TEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC--EEEEEEECSSCCCCEEECTTSS
T ss_pred             CeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce--eEEecccCCCCccceEECCCCC
Confidence            344556666677777777777777 9999999997776665 88999999976643  1345555666666699999999


Q ss_pred             eEEEEeCCC---eEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEee-CCCc-eeEEEEeCCCCeeEe--eeCcCC
Q 042434          281 KLLTCGNAE---VLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGS-SDTE-KGIFMCDCDGNEIKA--WRGTRI  353 (517)
Q Consensus       281 ~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~d~~-v~i~~~~~~~~~~~~--~~~~~~  353 (517)
                      +++++..++   .|.+||+.+++.+..+.. ...+.+++|+|+|+++++++ .++. +.+|.++..+.....  ......
T Consensus        97 ~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~  175 (331)
T 3u4y_A           97 FAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGG  175 (331)
T ss_dssp             EEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSS
T ss_pred             EEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCC
Confidence            999655553   899999999998887754 44568999999998666654 4466 666666644433211  111222


Q ss_pred             CceEEEEEccCCCEEEEEe-CCCcEEEEECCCce----EEeeccCCCeeEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCc
Q 042434          354 PKVLDLAVTPDGENLISVL-SDKDIRILNLGTYA----ERVISEEHPITSLSVSVDCKNFIVNL-NSQEIHMWDVAGKWE  427 (517)
Q Consensus       354 ~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~~~  427 (517)
                      .....++|+|+|+++++++ .++.|.+||+.+++    .........+..++|+|+|++++++. .++.|.+||+.++..
T Consensus       176 ~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~  255 (331)
T 3u4y_A          176 TRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL  255 (331)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred             CCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce
Confidence            3578999999999665554 68899999998765    33444556788999999999877665 477899999977522


Q ss_pred             c-ceEEeCc----ccCceEEEeecCCCCCcEEEEec-CCCcEEEEecCCCceeEEecCCCCCeeEEEecCCC
Q 042434          428 K-PFKYTGH----SQNKYVIRSCFGGLDGTFIASGS-ENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKR  493 (517)
Q Consensus       428 ~-~~~~~~~----~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~  493 (517)
                      . ...+...    .........+.++|||++|++++ .++.|.+||+.... +..+.+....-....++|++
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~-~~~~~~~~~~g~~~~~~~~~  326 (331)
T 3u4y_A          256 SFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV-VGYVAGIEANGGIAICHPDK  326 (331)
T ss_dssp             EEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE-EEECTTCCCBSCEEECCCC-
T ss_pred             eeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc-ccceecccccCCeEEECCcc
Confidence            1 2222211    11111112346699999886555 46799999997654 33444443333334455554

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.91  E-value=1.6e-22  Score=194.91  Aligned_cols=300  Identities=14%  Similarity=0.047  Sum_probs=205.6

Q ss_pred             cCCCcccEEEeccccCcEEE-----EEECCCCCEEEEeeC-CCc--EEEEEecCCCeeeEEEEeccCCCCEEEEEECCCC
Q 042434          208 DQIPTETVQILTEHKNEVWF-----VQFSNNGEYLASSSS-DCS--AIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDD  279 (517)
Q Consensus       208 ~~~~~~~~~~l~~h~~~v~~-----~~~s~~~~~l~t~~~-dg~--i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~  279 (517)
                      +......+..+..|......     .+|||||++|++++. +|.  |.+||+.++   .......++...+..+.|+|||
T Consensus        16 ~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g---~~~~lt~~~~~~~~~~~~spdg   92 (388)
T 3pe7_A           16 DASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQ---VATQLTEGRGDNTFGGFLSPDD   92 (388)
T ss_dssp             CTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTC---EEEECCCSSCBCSSSCEECTTS
T ss_pred             cCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCC---ceEEeeeCCCCCccceEEcCCC
Confidence            44456678888888887777     899999999999887 674  777787654   3334444555555577899999


Q ss_pred             CeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEE--EeCCCCeEEEee--------------------CCCceeEEE
Q 042434          280 TKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCA--WFPDSKRLVCGS--------------------SDTEKGIFM  337 (517)
Q Consensus       280 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~--~~~~~~~l~~~~--------------------~d~~v~i~~  337 (517)
                      +.|+.++.++.|++||+.+++....+..+...+....  ++|+++.++...                    .+....|+.
T Consensus        93 ~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  172 (388)
T 3pe7_A           93 DALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMR  172 (388)
T ss_dssp             SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEE
Confidence            9999999999999999999988777766666554444  489999887532                    122245999


Q ss_pred             EeCCCCeeEeeeCcCCCceEEEEEcc-CCCEEEEEeCC------CcEEEEECCCceE-EeeccC--CCeeEEEEcCCCCE
Q 042434          338 CDCDGNEIKAWRGTRIPKVLDLAVTP-DGENLISVLSD------KDIRILNLGTYAE-RVISEE--HPITSLSVSVDCKN  407 (517)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~-~~~~~~--~~i~~~~~s~~~~~  407 (517)
                      ||..+.....+.... ..+..+.|+| +|+.++.+..+      ..|.++|..+... ....+.  ..+..+.|+|||+.
T Consensus       173 ~d~~~g~~~~l~~~~-~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~  251 (388)
T 3pe7_A          173 VDLKTGESTVILQEN-QWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSA  251 (388)
T ss_dssp             EETTTCCEEEEEEES-SCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSC
T ss_pred             EECCCCceEEeecCC-ccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCE
Confidence            999877666555443 3688999999 99988877653      3788889877653 333333  24778899999998


Q ss_pred             EEEEeC-CC----eEEEEEcCCCCcc-ceEEeCcccCceEEEeecCCCCCcEEEEe---------cCCCcEEEEecCCCc
Q 042434          408 FIVNLN-SQ----EIHMWDVAGKWEK-PFKYTGHSQNKYVIRSCFGGLDGTFIASG---------SENSQIYIWNRRNSK  472 (517)
Q Consensus       408 l~~~~~-d~----~i~~~d~~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~---------~~dg~i~iwd~~~~~  472 (517)
                      |+..+. ++    .|++||+.++... +..+.++...........|+|||+.|+..         ..+..|++||+.+++
T Consensus       252 l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~  331 (388)
T 3pe7_A          252 LVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT  331 (388)
T ss_dssp             EEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTE
T ss_pred             EEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCc
Confidence            766543 22    3999999876322 12222211000000112358999988754         456689999999876


Q ss_pred             eeEEecCCCC-----------CeeEEEecCCCCcEEEEeeCCCcEEEeCCC
Q 042434          473 PIEILSGHSM-----------TVNCVSWNPKRPKMLASASDDHTIRIWGPC  512 (517)
Q Consensus       473 ~~~~~~~h~~-----------~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~  512 (517)
                      . ..+..|..           .+.+++|+|+|..+++++..+|...+|.++
T Consensus       332 ~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~  381 (388)
T 3pe7_A          332 Q-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT  381 (388)
T ss_dssp             E-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             e-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence            5 34544555           578899999995455555567877777654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.90  E-value=2.9e-22  Score=185.18  Aligned_cols=242  Identities=16%  Similarity=0.112  Sum_probs=177.4

Q ss_pred             CCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecC-CCeeeEEEEeccC-CCCEEEEEECCCCCeEEEEeC
Q 042434          210 IPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLE-DSKLTLKHTLRSH-QNPVSFVAWSPDDTKLLTCGN  287 (517)
Q Consensus       210 ~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~-~~~~~~~~~~~~h-~~~v~~l~~s~~~~~l~s~~~  287 (517)
                      ........+..|.+.|.+++|+|+|++|++++ ++.|++||+.+ +..   ......| ...+.+++|+|++++|++++.
T Consensus        29 ~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~---~~~~~~~~~~~~~~~~~spdg~~l~~~~~  104 (297)
T 2ojh_A           29 IRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP---EKVDTGFATICNNDHGISPDGALYAISDK  104 (297)
T ss_dssp             TTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC---EECCCTTCCCBCSCCEECTTSSEEEEEEC
T ss_pred             CCCCceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc---eEeccccccccccceEECCCCCEEEEEEe
Confidence            33444556777999999999999999999986 78999999976 432   2333444 477899999999999999983


Q ss_pred             --CC--eEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEE-EeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEc
Q 042434          288 --AE--VLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLV-CGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVT  362 (517)
Q Consensus       288 --dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~  362 (517)
                        ++  .|.+|+..++.. ..+..+ ..+.+++|+|+++.++ +++.++.+.+|.++..+.....+..+. ..+.+++|+
T Consensus       105 ~~~~~~~l~~~~~~~~~~-~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~s  181 (297)
T 2ojh_A          105 VEFGKSAIYLLPSTGGTP-RLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGE-GRNDGPDYS  181 (297)
T ss_dssp             TTTSSCEEEEEETTCCCC-EECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSS-SCEEEEEEC
T ss_pred             CCCCcceEEEEECCCCce-EEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCC-CccccceEC
Confidence              34  455555555553 344333 3488999999999887 677889877888888776665554433 478999999


Q ss_pred             cCCCEEEEEe-CCCcEEEEECC--Cce-EEeeccCCCeeEEEEcCCCCEEEEEeCC-----------CeEEEEEcCCCCc
Q 042434          363 PDGENLISVL-SDKDIRILNLG--TYA-ERVISEEHPITSLSVSVDCKNFIVNLNS-----------QEIHMWDVAGKWE  427 (517)
Q Consensus       363 ~~~~~l~~~~-~dg~i~i~d~~--~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----------~~i~~~d~~~~~~  427 (517)
                      |+++.+++++ .++.+.+|++.  ... .....+...+..++|+|+++++++++.+           +.|.+||+.++..
T Consensus       182 ~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~  261 (297)
T 2ojh_A          182 PDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV  261 (297)
T ss_dssp             TTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred             CCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence            9999888766 58889999875  333 3444455678899999999999888765           5699999977522


Q ss_pred             c-ceEEeCcccCceEEEeecCCCCCcEEEEecCCC
Q 042434          428 K-PFKYTGHSQNKYVIRSCFGGLDGTFIASGSENS  461 (517)
Q Consensus       428 ~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  461 (517)
                      . ...+.++...   +..+.|+|+|++|++++.+.
T Consensus       262 ~~~~~~~~~~~~---~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          262 ETLFDLFGGQGT---MNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEEEEEEESTTT---SCSCCBCTTSSEEEEEEECC
T ss_pred             eeeeccCCCCcc---cccceECCCCCEEEEEEecc
Confidence            2 2223344433   45567799999998887654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.90  E-value=7.1e-22  Score=187.40  Aligned_cols=263  Identities=14%  Similarity=0.114  Sum_probs=182.5

Q ss_pred             EEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCC-CCEEEEEECCCCCeEE-EEeCCCeEEEEECCCCcEEEE
Q 042434          227 FVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQ-NPVSFVAWSPDDTKLL-TCGNAEVLKLWDVETGICKHT  304 (517)
Q Consensus       227 ~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~-~~v~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~  304 (517)
                      .+++++++.++++++.++.|.+||..++   +....+..+. ..+..++|+|++++++ ++..++.|.+||+.+++....
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~---~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~   80 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASD---TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFH   80 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTT---EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCC---cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEE
Confidence            4568889999999999999999999765   3334444332 2578999999998665 555789999999999988877


Q ss_pred             eCCCC------CceEEEEEeCCCCeEEEeeCC------------CceeEEEEeCCCCe----eEeeeCcCCCceEEEEEc
Q 042434          305 FGDHG------FIVSSCAWFPDSKRLVCGSSD------------TEKGIFMCDCDGNE----IKAWRGTRIPKVLDLAVT  362 (517)
Q Consensus       305 ~~~~~------~~v~~i~~~~~~~~l~~~~~d------------~~v~i~~~~~~~~~----~~~~~~~~~~~i~~~~~~  362 (517)
                      +....      ..+.+++|+|+|+++++++.+            +.  +++||..+..    +......  ..+.+++|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~--i~~~d~~~~~~~~~~~~~~~~--~~~~~~~~s  156 (349)
T 1jmx_B           81 ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR--LEVFSTADGLEAKPVRTFPMP--RQVYLMRAA  156 (349)
T ss_dssp             EESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCE--EEEEEGGGGGGBCCSEEEECC--SSCCCEEEC
T ss_pred             EEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCe--EEEEECCCccccceeeeccCC--CcccceeEC
Confidence            65332      237889999999999998865            66  8889987522    2222222  258889999


Q ss_pred             cCCCEEEEEeCCCcEEEEECCCceE-EeeccCC-------------------------CeeEEEEcCCCCE---------
Q 042434          363 PDGENLISVLSDKDIRILNLGTYAE-RVISEEH-------------------------PITSLSVSVDCKN---------  407 (517)
Q Consensus       363 ~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~-------------------------~i~~~~~s~~~~~---------  407 (517)
                      |+|+ +++++  +.|.+||..+++. .......                         ....+++++++..         
T Consensus       157 ~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  233 (349)
T 1jmx_B          157 DDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLY  233 (349)
T ss_dssp             TTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEE
T ss_pred             CCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccce
Confidence            9999 55554  3499999988762 2222111                         2344566654421         


Q ss_pred             --EEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCC-CCcEEEEecCCCcEEEEecCCCceeEEecCCCCCe
Q 042434          408 --FIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGL-DGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTV  484 (517)
Q Consensus       408 --l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v  484 (517)
                        +.....++.+.+|++.          ....   ....+.++| +|++++++  ++.|++||+.+++.+..+.. ...+
T Consensus       234 ~~~~~~~~~~~~~~~~~~----------~~~~---~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~  297 (349)
T 1jmx_B          234 GYLSVDLKTGKTHTQEFA----------DLTE---LYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL-DHTY  297 (349)
T ss_dssp             EEEEEETTTCCEEEEEEE----------ECSS---CEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC-SSCC
T ss_pred             eEEEEeccCCcEEecccc----------cCCC---cceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC-CCCc
Confidence              1122233444444431          1111   233455689 99999988  88999999999998888764 3457


Q ss_pred             eEEEecCCCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434          485 NCVSWNPKRPKMLASASDDHTIRIWGPCQSSE  516 (517)
Q Consensus       485 ~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~  516 (517)
                      .+++|+|++ ..|++++.++.|++||+.+++.
T Consensus       298 ~~~~~s~dg-~~l~~~~~~~~v~v~d~~~~~~  328 (349)
T 1jmx_B          298 YCVAFDKKG-DKLYLGGTFNDLAVFNPDTLEK  328 (349)
T ss_dssp             CEEEECSSS-SCEEEESBSSEEEEEETTTTEE
T ss_pred             cceEECCCC-CEEEEecCCCeEEEEeccccce
Confidence            899999999 5666678889999999987653

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.89  E-value=2.6e-20  Score=177.60  Aligned_cols=264  Identities=11%  Similarity=0.099  Sum_probs=180.9

Q ss_pred             ccCcEEEEEECCCCCEEEEeeCC----CcEEEEEecCC-CeeeEEEEeccCCCCEEEEEECCCCCeEEEEe-CCCeEEEE
Q 042434          221 HKNEVWFVQFSNNGEYLASSSSD----CSAIIWKVLED-SKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCG-NAEVLKLW  294 (517)
Q Consensus       221 h~~~v~~~~~s~~~~~l~t~~~d----g~i~iw~~~~~-~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~iw  294 (517)
                      |...+..++|+|+|++|++++.+    +.|.+|++... .....+.....+......+++  ++++|++++ .++.|.+|
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~  125 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF  125 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence            77888899999999999998876    79999999764 455555566556677888888  788777766 57899999


Q ss_pred             ECCCCcEEEEe------CC--------CCCceEEEEEeCCCCeEEEeeC-CCceeEEEEeCCCC----e-e------Eee
Q 042434          295 DVETGICKHTF------GD--------HGFIVSSCAWFPDSKRLVCGSS-DTEKGIFMCDCDGN----E-I------KAW  348 (517)
Q Consensus       295 d~~~~~~~~~~------~~--------~~~~v~~i~~~~~~~~l~~~~~-d~~v~i~~~~~~~~----~-~------~~~  348 (517)
                      ++.....+...      .+        +...+.+++|+|+|+++++++. ++.+.+|.++..+.    . +      ...
T Consensus       126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~  205 (361)
T 3scy_A          126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF  205 (361)
T ss_dssp             EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred             EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence            99754322111      11        1234588999999997766654 67744554454442    1 1      222


Q ss_pred             eCcCCCceEEEEEccCCCEEEEEe-CCCcEEEEECCCceEEe---e----ccCCCeeEEEEcCCCCEEEEEeCC--CeEE
Q 042434          349 RGTRIPKVLDLAVTPDGENLISVL-SDKDIRILNLGTYAERV---I----SEEHPITSLSVSVDCKNFIVNLNS--QEIH  418 (517)
Q Consensus       349 ~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~---~----~~~~~i~~~~~s~~~~~l~~~~~d--~~i~  418 (517)
                      .......+..++|+|+|+++++++ .++.|.+||+.++....   .    .+......++|+|+|++++++..+  +.|.
T Consensus       206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~  285 (361)
T 3scy_A          206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVA  285 (361)
T ss_dssp             ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEE
T ss_pred             ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEE
Confidence            333334678999999999887777 68999999998664211   1    122346799999999998777665  8999


Q ss_pred             EEEcCC--CC-ccceEEeCcccCceEEEeecCCCCCcEEEEec-CCCcEEEE--ecCCCceeEEec-CCCCCeeEEEec
Q 042434          419 MWDVAG--KW-EKPFKYTGHSQNKYVIRSCFGGLDGTFIASGS-ENSQIYIW--NRRNSKPIEILS-GHSMTVNCVSWN  490 (517)
Q Consensus       419 ~~d~~~--~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iw--d~~~~~~~~~~~-~h~~~v~~v~~~  490 (517)
                      +|++..  +. .....+.. ..   ....+.++|+|++|++++ .++.|.+|  |..++++..... .+...+.|++|.
T Consensus       286 v~~~~~~~g~~~~~~~~~~-g~---~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          286 IFKVDETNGTLTKVGYQLT-GI---HPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             EEEECTTTCCEEEEEEEEC-SS---CCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred             EEEEcCCCCcEEEeeEecC-CC---CCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence            999962  21 12222222 11   133455699999888887 67889996  555777655432 244678888886

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.89  E-value=5.8e-21  Score=181.45  Aligned_cols=243  Identities=11%  Similarity=0.072  Sum_probs=183.6

Q ss_pred             CCCEEEEEECCCCCeEEEEeC-------CCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeC-CCceeEEEE
Q 042434          267 QNPVSFVAWSPDDTKLLTCGN-------AEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSS-DTEKGIFMC  338 (517)
Q Consensus       267 ~~~v~~l~~s~~~~~l~s~~~-------dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-d~~v~i~~~  338 (517)
                      ...+..++|+|+++++++++.       ++.|.+||..+++.+..+.. ...+.+++|+|+++.+++++. ++.  ++.|
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~--v~~~  116 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSA--VTAI  116 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTE--EEEE
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCE--EEEE
Confidence            356789999999998888774       56899999999998887753 344778999999996665544 566  8999


Q ss_pred             eCCCCee-EeeeCcCCC--------ceEEEEEccCCCEEEEEe--CCCcEEEEECCCce-EEeec-cCCCeeEEEEcCCC
Q 042434          339 DCDGNEI-KAWRGTRIP--------KVLDLAVTPDGENLISVL--SDKDIRILNLGTYA-ERVIS-EEHPITSLSVSVDC  405 (517)
Q Consensus       339 ~~~~~~~-~~~~~~~~~--------~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~-~~~~~-~~~~i~~~~~s~~~  405 (517)
                      |..+... ..+..+...        .+.+++|+|+++.+++++  .++.|.+||..+.+ ..... ....+..++|+|++
T Consensus       117 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg  196 (353)
T 3vgz_A          117 DAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEG  196 (353)
T ss_dssp             ETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTT
T ss_pred             eCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCC
Confidence            9875444 444433211        278899999999887776  47889999999887 33333 45568899999999


Q ss_pred             CEEEEEeCCCeEEEEEcCCCCccceEEeC-cccCceEEEeecCCCCCcEEEEecC-CCcEEEEecCCCceeEEecCCCCC
Q 042434          406 KNFIVNLNSQEIHMWDVAGKWEKPFKYTG-HSQNKYVIRSCFGGLDGTFIASGSE-NSQIYIWNRRNSKPIEILSGHSMT  483 (517)
Q Consensus       406 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~h~~~  483 (517)
                      ++++++..++.|.+||+.+. .....+.. ..........+.++|+|+++++++. ++.|++||..+++.+..+..+.  
T Consensus       197 ~~l~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--  273 (353)
T 3vgz_A          197 KRLYTTNADGELITIDTADN-KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--  273 (353)
T ss_dssp             TEEEEECTTSEEEEEETTTT-EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--
T ss_pred             CEEEEEcCCCeEEEEECCCC-eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--
Confidence            99999999999999999876 44444433 1112223444566899997776665 4899999999999888887543  


Q ss_pred             eeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434          484 VNCVSWNPKRPKMLASASDDHTIRIWGPCQSS  515 (517)
Q Consensus       484 v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~  515 (517)
                      ..+++|+|++..++++...++.|.+||+.+++
T Consensus       274 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~  305 (353)
T 3vgz_A          274 SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYK  305 (353)
T ss_dssp             CCCEEEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred             CceEEECCCCCEEEEEECCCCeEEEEECCCCe
Confidence            36799999995466666689999999998765

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.88  E-value=8.4e-20  Score=174.07  Aligned_cols=275  Identities=13%  Similarity=0.118  Sum_probs=183.0

Q ss_pred             CCCEEEEee----CCCcEEEEEecCC-CeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCC----CeEEEEECCC--CcE
Q 042434          233 NGEYLASSS----SDCSAIIWKVLED-SKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNA----EVLKLWDVET--GIC  301 (517)
Q Consensus       233 ~~~~l~t~~----~dg~i~iw~~~~~-~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d----g~i~iwd~~~--~~~  301 (517)
                      ...+++.|+    .++.|.+|+++.. .........  +...+..++|+||+++|++++.+    +.|.+|++..  ++.
T Consensus        12 ~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~   89 (361)
T 3scy_A           12 SELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTL   89 (361)
T ss_dssp             GEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEE
T ss_pred             CceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcE
Confidence            334555653    4678999988642 333444444  67778889999999999998876    7999998865  443


Q ss_pred             --EEEeCCCCCceEEEEEeCCCCeEEEee-CCCceeEEEEeCCC-CeeEee----e--C-------cCCCceEEEEEccC
Q 042434          302 --KHTFGDHGFIVSSCAWFPDSKRLVCGS-SDTEKGIFMCDCDG-NEIKAW----R--G-------TRIPKVLDLAVTPD  364 (517)
Q Consensus       302 --~~~~~~~~~~v~~i~~~~~~~~l~~~~-~d~~v~i~~~~~~~-~~~~~~----~--~-------~~~~~i~~~~~~~~  364 (517)
                        +.....+......+++  +++++++++ .++.  +.+|+... ..+...    .  .       .....+.+++|+|+
T Consensus        90 ~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~--v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spd  165 (361)
T 3scy_A           90 HLLNTQKTMGADPCYLTT--NGKNIVTANYSGGS--ITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPD  165 (361)
T ss_dssp             EEEEEEECSSSCEEEEEE--CSSEEEEEETTTTE--EEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTT
T ss_pred             EEeeEeccCCCCcEEEEE--CCCEEEEEECCCCE--EEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCC
Confidence              3334345566777877  788777776 4677  66666642 111111    1  1       01224588999999


Q ss_pred             CCEEEEEe-CCCcEEEEECCCce---------------EEeeccCCCeeEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCc
Q 042434          365 GENLISVL-SDKDIRILNLGTYA---------------ERVISEEHPITSLSVSVDCKNFIVNL-NSQEIHMWDVAGKWE  427 (517)
Q Consensus       365 ~~~l~~~~-~dg~i~i~d~~~~~---------------~~~~~~~~~i~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~~~  427 (517)
                      |+++++++ .++.|.+|++....               .........+..++|+|+|++++++. .++.|.+||+.++..
T Consensus       166 g~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~  245 (361)
T 3scy_A          166 GKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGML  245 (361)
T ss_dssp             SSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEE
T ss_pred             CCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCce
Confidence            99776655 47899999876432               12233455678999999999888777 589999999975411


Q ss_pred             -cceEEeCcccCceEEEeecCCCCCcEEEEecCC--CcEEEEecC--CCc--eeEEecCCCCCeeEEEecCCCCcEEEEe
Q 042434          428 -KPFKYTGHSQNKYVIRSCFGGLDGTFIASGSEN--SQIYIWNRR--NSK--PIEILSGHSMTVNCVSWNPKRPKMLASA  500 (517)
Q Consensus       428 -~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d--g~i~iwd~~--~~~--~~~~~~~h~~~v~~v~~~~~~~~~l~s~  500 (517)
                       .................+.++|||++|++++.+  +.|.+|++.  +++  .+..+.. ...+.+++|+|+| ++|+++
T Consensus       246 ~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg-~~l~~~  323 (361)
T 3scy_A          246 DEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNG-KYLLVA  323 (361)
T ss_dssp             EEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTS-CEEEEE
T ss_pred             EEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCC-CEEEEE
Confidence             122222222211223456679999998776654  899999985  454  4555554 5678899999999 566666


Q ss_pred             e-CCCcEEEe--CCCCCC
Q 042434          501 S-DDHTIRIW--GPCQSS  515 (517)
Q Consensus       501 ~-~dg~v~iw--~~~~~~  515 (517)
                      + .++.|.+|  |..+++
T Consensus       324 ~~~~~~v~v~~~d~~~g~  341 (361)
T 3scy_A          324 CRDTNVIQIFERDQATGL  341 (361)
T ss_dssp             ETTTTEEEEEEECTTTCC
T ss_pred             ECCCCCEEEEEEECCCCc
Confidence            5 78999996  444543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.88  E-value=4.5e-20  Score=174.94  Aligned_cols=250  Identities=13%  Similarity=0.134  Sum_probs=170.1

Q ss_pred             eccccCcEEEEEECCCCCEEEEeeC---CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEe-CCCeEEE
Q 042434          218 LTEHKNEVWFVQFSNNGEYLASSSS---DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCG-NAEVLKL  293 (517)
Q Consensus       218 l~~h~~~v~~~~~s~~~~~l~t~~~---dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~i  293 (517)
                      ...+...+..++|+|+|+ |++++.   ++.|.+|++.++ ....+..+..+...+..++|+|||++|++++ .++.|.+
T Consensus        35 ~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g-~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v  112 (347)
T 3hfq_A           35 LLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQ-TAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEV  112 (347)
T ss_dssp             EEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETT-EEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEE
T ss_pred             eeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCC-cEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEE
Confidence            345667788899999999 555544   689999999644 3445555566778889999999999988887 6789999


Q ss_pred             EECC-CCc--EEEEeCC---------CCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCC-CCeeE---eeeCcCCCceE
Q 042434          294 WDVE-TGI--CKHTFGD---------HGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD-GNEIK---AWRGTRIPKVL  357 (517)
Q Consensus       294 wd~~-~~~--~~~~~~~---------~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~-~~~~~---~~~~~~~~~i~  357 (517)
                      |++. ++.  .+..+..         ....+.+++|+|+|+.+++...++.  +++|+.. +..+.   .........+.
T Consensus       113 ~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~--v~~~~~~~~g~~~~~~~~~~~~g~~p~  190 (347)
T 3hfq_A          113 MKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDK--VYVYNVSDAGQLSEQSVLTMEAGFGPR  190 (347)
T ss_dssp             EEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTE--EEEEEECTTSCEEEEEEEECCTTCCEE
T ss_pred             EEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCE--EEEEEECCCCcEEEeeeEEcCCCCCCc
Confidence            9995 333  2333321         1234889999999996665566777  6666655 33222   12222333678


Q ss_pred             EEEEccCCCEEEE-EeCCCcEEEEECCC--ceE----EeeccC------CCeeEEEEcCCCCEEEE-EeCCCeEEEEEcC
Q 042434          358 DLAVTPDGENLIS-VLSDKDIRILNLGT--YAE----RVISEE------HPITSLSVSVDCKNFIV-NLNSQEIHMWDVA  423 (517)
Q Consensus       358 ~~~~~~~~~~l~~-~~~dg~i~i~d~~~--~~~----~~~~~~------~~i~~~~~s~~~~~l~~-~~~d~~i~~~d~~  423 (517)
                      .++|+|+|+++++ ...++.+.+|++..  +..    ......      ..+..++|+|+|+++++ +..++.|.+|++.
T Consensus       191 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~  270 (347)
T 3hfq_A          191 HLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT  270 (347)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred             eEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence            8999999996665 45688999999874  331    111111      34788999999998755 4568999999986


Q ss_pred             CCC--ccceEEeCcccCceEEEeecCCCCCcEEEEecCC-CcEEEE--ecCCCcee
Q 042434          424 GKW--EKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSEN-SQIYIW--NRRNSKPI  474 (517)
Q Consensus       424 ~~~--~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~i~iw--d~~~~~~~  474 (517)
                      ...  .....+..+...   ...+.++|||++|++++.+ +.|.+|  |..+|++.
T Consensus       271 ~~g~~~~~~~~~~~~~~---~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          271 ADGHLTLIQQISTEGDF---PRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS  323 (347)
T ss_dssp             GGGCEEEEEEEECSSSC---CCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             CCCcEEEeEEEecCCCC---cCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence            321  222233332222   3345569999988887764 899999  55667654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.88  E-value=9.3e-21  Score=178.68  Aligned_cols=261  Identities=12%  Similarity=0.056  Sum_probs=186.2

Q ss_pred             cccccCCCcccEEEecccc-C-cEEEEEECCCCCEEE-EeeCCCcEEEEEecCCCeeeEEEEecc-C----CCCEEEEEE
Q 042434          204 CCGRDQIPTETVQILTEHK-N-EVWFVQFSNNGEYLA-SSSSDCSAIIWKVLEDSKLTLKHTLRS-H----QNPVSFVAW  275 (517)
Q Consensus       204 ~~~~~~~~~~~~~~l~~h~-~-~v~~~~~s~~~~~l~-t~~~dg~i~iw~~~~~~~~~~~~~~~~-h----~~~v~~l~~  275 (517)
                      ...++....+.+..+.... . .+.+++|+|+|++++ +++.++.|.+||+.++...   ..+.. +    ...+.+++|
T Consensus        13 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~   89 (337)
T 1pby_B           13 LVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETL---GRIDLSTPEERVKSLFGAAL   89 (337)
T ss_dssp             EEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEE---EEEECCBTTEEEECTTCEEE
T ss_pred             EEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeE---eeEEcCCcccccccccceEE
Confidence            3344444556666665322 2 588999999998664 5556789999999766432   32321 1    125678999


Q ss_pred             CCCCCeEEEEe------------CCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCC
Q 042434          276 SPDDTKLLTCG------------NAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGN  343 (517)
Q Consensus       276 s~~~~~l~s~~------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~  343 (517)
                      +|+|+++++++            .++.|.+||+.+++....+.. ...+.+++|+|++++++++  ++.  ++.||..+.
T Consensus        90 s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~--i~~~d~~~~  164 (337)
T 1pby_B           90 SPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRD--LHVMDPEAG  164 (337)
T ss_dssp             CTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSS--EEEEETTTT
T ss_pred             CCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCe--EEEEECCCC
Confidence            99999998886            579999999999988877754 4567889999999988888  455  999998865


Q ss_pred             eeE-eeeCcCCCceEEEEEccCCCEEEEEeCCC------------------------cEEEEECCCceEE---eeccCCC
Q 042434          344 EIK-AWRGTRIPKVLDLAVTPDGENLISVLSDK------------------------DIRILNLGTYAER---VISEEHP  395 (517)
Q Consensus       344 ~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg------------------------~i~i~d~~~~~~~---~~~~~~~  395 (517)
                      ... .+.....  ...+.|+|++..++..+..+                        .|.+||+.+++..   ...+...
T Consensus       165 ~~~~~~~~~~~--~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~  242 (337)
T 1pby_B          165 TLVEDKPIQSW--EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVF  242 (337)
T ss_dssp             EEEEEECSTTT--TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSC
T ss_pred             cEeeeeecccc--CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCc
Confidence            543 3332221  11237889988665544332                        4689999887632   2234456


Q ss_pred             eeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeE
Q 042434          396 ITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIE  475 (517)
Q Consensus       396 i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  475 (517)
                      +..++|+|++++++++  ++.|.+||+.+. .....+.....    +..+.++|+|+++++++.++.|++||+.+++.+.
T Consensus       243 ~~~~~~s~dg~~l~~~--~~~v~~~d~~~~-~~~~~~~~~~~----~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~  315 (337)
T 1pby_B          243 YFSTAVNPAKTRAFGA--YNVLESFDLEKN-ASIKRVPLPHS----YYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKG  315 (337)
T ss_dssp             EEEEEECTTSSEEEEE--ESEEEEEETTTT-EEEEEEECSSC----CCEEEECTTSCEEEEESBSSEEEEEETTTCCEEE
T ss_pred             eeeEEECCCCCEEEEe--CCeEEEEECCCC-cCcceecCCCc----eeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEE
Confidence            7889999999999888  799999999876 44444433221    2345568999999999999999999999999988


Q ss_pred             EecCCC
Q 042434          476 ILSGHS  481 (517)
Q Consensus       476 ~~~~h~  481 (517)
                      .+..+.
T Consensus       316 ~~~~~~  321 (337)
T 1pby_B          316 QVDLPG  321 (337)
T ss_dssp             EEECGG
T ss_pred             EEEcCC
Confidence            887553

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.87  E-value=2.5e-21  Score=197.00  Aligned_cols=232  Identities=9%  Similarity=0.026  Sum_probs=177.5

Q ss_pred             CCCEEEEEECCCCCeEEEEeC-CCeEEEEECCCCcEEEEeCCCC-CceEEEEEeCCCCeEEEeeC---CCceeEEEEeC-
Q 042434          267 QNPVSFVAWSPDDTKLLTCGN-AEVLKLWDVETGICKHTFGDHG-FIVSSCAWFPDSKRLVCGSS---DTEKGIFMCDC-  340 (517)
Q Consensus       267 ~~~v~~l~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~~~~~---d~~v~i~~~~~-  340 (517)
                      ..+|.+++|+|||+.||+++. ||++.||++.+++..+ +..+. ..+.+++|+|| +.+++++.   +....+|.++. 
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~   98 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS   98 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence            467999999999999999887 9999999997766554 44444 68999999999 77777765   44556888888 


Q ss_pred             -CCCeeEeeeCcCCCceEEEEEccCCCE-EEEEeCCCcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCC----
Q 042434          341 -DGNEIKAWRGTRIPKVLDLAVTPDGEN-LISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNS----  414 (517)
Q Consensus       341 -~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----  414 (517)
                       .+... .+....  .....+|+|+++. +++.+.++.+.+||+.+++......... .+++|+|||+++++++.+    
T Consensus        99 ~~g~~~-~l~~~~--~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~-~~~~~spDG~~la~~~~~~~~~  174 (582)
T 3o4h_A           99 RPGEEQ-RLEAVK--PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG-FGFVSDIRGDLIAGLGFFGGGR  174 (582)
T ss_dssp             STTCCE-ECTTSC--SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS-CEEEEEEETTEEEEEEEEETTE
T ss_pred             CCCccc-cccCCC--CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC-ceEEECCCCCEEEEEEEcCCCC
Confidence             65544 332222  3446688888863 3444455556699998877333322222 899999999999988776    


Q ss_pred             CeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCC--cEEEEecCCCceeEEecCCCCCeeEEE----
Q 042434          415 QEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENS--QIYIWNRRNSKPIEILSGHSMTVNCVS----  488 (517)
Q Consensus       415 ~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~h~~~v~~v~----  488 (517)
                      +.|++||+.++.  ...+..+...   +....|+|||++|+++..+|  .|++||+.+++.. .+.+|...+.+++    
T Consensus       175 ~~i~~~d~~~g~--~~~l~~~~~~---~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~  248 (582)
T 3o4h_A          175 VSLFTSNLSSGG--LRVFDSGEGS---FSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAI  248 (582)
T ss_dssp             EEEEEEETTTCC--CEEECCSSCE---EEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEE
T ss_pred             eEEEEEcCCCCC--ceEeecCCCc---cccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccc
Confidence            789999987752  3345554432   45667799999999888888  8999999999888 7888888888888    


Q ss_pred             ----ecCCCCcEEEEeeCCCcEEEeCC
Q 042434          489 ----WNPKRPKMLASASDDHTIRIWGP  511 (517)
Q Consensus       489 ----~~~~~~~~l~s~~~dg~v~iw~~  511 (517)
                          |+||| .++++++.||.+++|++
T Consensus       249 ~~~~~spdg-~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          249 TWLGYLPDG-RLAVVARREGRSAVFID  274 (582)
T ss_dssp             EEEEECTTS-CEEEEEEETTEEEEEET
T ss_pred             cceeEcCCC-cEEEEEEcCCcEEEEEE
Confidence                99999 89999999999999998

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.87  E-value=1.9e-21  Score=203.02  Aligned_cols=276  Identities=14%  Similarity=0.125  Sum_probs=187.9

Q ss_pred             EEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCC---CEEEEEECCCCCeEEEEeC---------CCeEEEE
Q 042434          227 FVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQN---PVSFVAWSPDDTKLLTCGN---------AEVLKLW  294 (517)
Q Consensus       227 ~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~---~v~~l~~s~~~~~l~s~~~---------dg~i~iw  294 (517)
                      +++|+|+|++++++ .|+.|++||+.++..   ...+..|..   .+.+++|||||++|++++.         ++.|++|
T Consensus        20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~   95 (719)
T 1z68_A           20 FPNWISGQEYLHQS-ADNNIVLYNIETGQS---YTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIY   95 (719)
T ss_dssp             CCEESSSSEEEEEC-TTSCEEEEESSSCCE---EEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             ccEECCCCeEEEEc-CCCCEEEEEcCCCcE---EEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEE
Confidence            67899999766654 699999999977643   333444433   4899999999999998876         7899999


Q ss_pred             ECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeee-CcCCCce-----------------
Q 042434          295 DVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWR-GTRIPKV-----------------  356 (517)
Q Consensus       295 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~-~~~~~~i-----------------  356 (517)
                      |+.+++.+... .....+.+++|+|||+.|+++. ++.  |++|+..+.....+. ..+...+                 
T Consensus        96 d~~~g~~~~~~-~l~~~~~~~~~SPDG~~la~~~-~~~--i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~  171 (719)
T 1z68_A           96 DLSNGEFVRGN-ELPRPIQYLCWSPVGSKLAYVY-QNN--IYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATK  171 (719)
T ss_dssp             ETTTTEECCSS-CCCSSBCCEEECSSTTCEEEEE-TTE--EEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSS
T ss_pred             ECCCCccccce-ecCcccccceECCCCCEEEEEE-CCe--EEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCc
Confidence            99998763111 1235688999999999999986 555  999998765544332 2221112                 


Q ss_pred             EEEEEccCCCEEEEEeCCC----------------------------------cEEEEECCCceE----Ee------ecc
Q 042434          357 LDLAVTPDGENLISVLSDK----------------------------------DIRILNLGTYAE----RV------ISE  392 (517)
Q Consensus       357 ~~~~~~~~~~~l~~~~~dg----------------------------------~i~i~d~~~~~~----~~------~~~  392 (517)
                      .+++|+|||+.|++++.|.                                  .|++||+.++..    ..      ..+
T Consensus       172 ~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~  251 (719)
T 1z68_A          172 YALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASS  251 (719)
T ss_dssp             CCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTS
T ss_pred             ccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCC
Confidence            4899999999999887652                                  788999988753    11      135


Q ss_pred             CCCeeEEEEcCCCCEEEEEeCC----CeEEEEE----cCCCCccceEE----eCcccCce--EEEeecCCCCCcEEEE--
Q 042434          393 EHPITSLSVSVDCKNFIVNLNS----QEIHMWD----VAGKWEKPFKY----TGHSQNKY--VIRSCFGGLDGTFIAS--  456 (517)
Q Consensus       393 ~~~i~~~~~s~~~~~l~~~~~d----~~i~~~d----~~~~~~~~~~~----~~~~~~~~--~i~~~~~s~~~~~l~~--  456 (517)
                      ...+..++|+||++.+++....    ..|.+||    +.++ ......    .++.....  ......|+|||+.++.  
T Consensus       252 ~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~  330 (719)
T 1z68_A          252 DYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTW-DCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIF  330 (719)
T ss_dssp             CEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSE-ECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEE
T ss_pred             cceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCC-ceEEEEecccccCCceEccccCCccEECCCCCeEEEEE
Confidence            5678999999998766664432    2488899    6554 222222    23332211  0013456899996544  


Q ss_pred             ecCCC--cEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeC----CCcEEEeCCCC
Q 042434          457 GSENS--QIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASD----DHTIRIWGPCQ  513 (517)
Q Consensus       457 ~~~dg--~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~----dg~v~iw~~~~  513 (517)
                      +..+|  .|++||+.+++ ...+..+...+..+.++ ++..+++++..    ++.+++|.+..
T Consensus       331 ~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~  391 (719)
T 1z68_A          331 SDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI  391 (719)
T ss_dssp             ECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred             EccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence            44555  67888887776 45666666778888777 77445555544    48899998753

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.87  E-value=3.8e-20  Score=180.05  Aligned_cols=202  Identities=14%  Similarity=0.077  Sum_probs=151.2

Q ss_pred             ccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCe--------eeEE----EEeccCCCCEEEEEECCCCCeEE----E
Q 042434          221 HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSK--------LTLK----HTLRSHQNPVSFVAWSPDDTKLL----T  284 (517)
Q Consensus       221 h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~--------~~~~----~~~~~h~~~v~~l~~s~~~~~l~----s  284 (517)
                      +...++.+++++++.++++++.|+ ++||+......        ....    .....+...|.+++|+|++++|+    +
T Consensus        35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~s  113 (434)
T 2oit_A           35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMS  113 (434)
T ss_dssp             CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred             CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEec
Confidence            345688999999999999999888 89987631100        0000    01123567899999999999999    7


Q ss_pred             EeCCCeEEEEECCCC--------c---EEEEeCCCCCceEEEEEeCC-CCeEEEeeCCCceeEEEEeCCCCeeEeeeCcC
Q 042434          285 CGNAEVLKLWDVETG--------I---CKHTFGDHGFIVSSCAWFPD-SKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTR  352 (517)
Q Consensus       285 ~~~dg~i~iwd~~~~--------~---~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~  352 (517)
                      |+.|+.|++||+.++        +   ....+.+|...|.+++|+|+ +.+|++++.||+  |.+||............+
T Consensus       114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~--v~iwD~~~~~~~~~~~~~  191 (434)
T 2oit_A          114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS--IAVLQVTETVKVCATLPS  191 (434)
T ss_dssp             TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC--EEEEEESSSEEEEEEECG
T ss_pred             cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe--EEEEEcCCCcceeeccCC
Confidence            888999999998654        1   24566678999999999998 889999999999  778887765433323334


Q ss_pred             CCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEeecc-------CCCeeEEEEcCCCCEEEEEe-CCC------eE
Q 042434          353 IPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVISE-------EHPITSLSVSVDCKNFIVNL-NSQ------EI  417 (517)
Q Consensus       353 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~-------~~~i~~~~~s~~~~~l~~~~-~d~------~i  417 (517)
                      ...+.+++|+|+|++|++|+.||.|++||.+... .....+       ...+.+++|++++.++++.+ .+|      .+
T Consensus       192 ~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v  271 (434)
T 2oit_A          192 TVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDV  271 (434)
T ss_dssp             GGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEE
T ss_pred             CCceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCce
Confidence            4589999999999999999999999999998322 222111       22789999999887775543 333      38


Q ss_pred             EEEEcCCC
Q 042434          418 HMWDVAGK  425 (517)
Q Consensus       418 ~~~d~~~~  425 (517)
                      ++|+++..
T Consensus       272 ~i~~l~~~  279 (434)
T 2oit_A          272 VMALLPKK  279 (434)
T ss_dssp             EEEECCCT
T ss_pred             EEEEeccC
Confidence            99999754

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.87  E-value=1.2e-20  Score=196.95  Aligned_cols=302  Identities=11%  Similarity=0.033  Sum_probs=199.5

Q ss_pred             CcccccCCCcccEEEeccccC---cEEEEEECCCCCEEEEeeC---------CCcEEEEEecCCCeeeEEEEeccCCCCE
Q 042434          203 HCCGRDQIPTETVQILTEHKN---EVWFVQFSNNGEYLASSSS---------DCSAIIWKVLEDSKLTLKHTLRSHQNPV  270 (517)
Q Consensus       203 ~~~~~~~~~~~~~~~l~~h~~---~v~~~~~s~~~~~l~t~~~---------dg~i~iw~~~~~~~~~~~~~~~~h~~~v  270 (517)
                      ....++...++....+.+|..   .|.+++|||||++|++++.         ++.|++||+.++...   .. ......+
T Consensus        37 ~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~---~~-~~l~~~~  112 (719)
T 1z68_A           37 NIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFV---RG-NELPRPI  112 (719)
T ss_dssp             CEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC---CS-SCCCSSB
T ss_pred             CEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccc---cc-eecCccc
Confidence            344455555666666666654   4999999999999999876         789999999766320   00 1113568


Q ss_pred             EEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeC-CCCCce-----------------EEEEEeCCCCeEEEeeCCC-
Q 042434          271 SFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFG-DHGFIV-----------------SSCAWFPDSKRLVCGSSDT-  331 (517)
Q Consensus       271 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v-----------------~~i~~~~~~~~l~~~~~d~-  331 (517)
                      .+++|||||+.|+++. ++.|++|++.+++...... ++...|                 .+++|+|||+.|++++.|. 
T Consensus       113 ~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~  191 (719)
T 1z68_A          113 QYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDT  191 (719)
T ss_dssp             CCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECT
T ss_pred             ccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCC
Confidence            8999999999999985 7899999999888765332 222222                 4899999999999988652 


Q ss_pred             -------------------------------ceeEEEEeCCCCeeE---eee-----CcCCCceEEEEEccCCCEEEEEe
Q 042434          332 -------------------------------EKGIFMCDCDGNEIK---AWR-----GTRIPKVLDLAVTPDGENLISVL  372 (517)
Q Consensus       332 -------------------------------~v~i~~~~~~~~~~~---~~~-----~~~~~~i~~~~~~~~~~~l~~~~  372 (517)
                                                     ...+++||..+....   ...     ..+...+..++|+||++.+++..
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~  271 (719)
T 1z68_A          192 DIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWL  271 (719)
T ss_dssp             TSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEE
T ss_pred             CCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEe
Confidence                                           225889998875431   111     12445789999999987766644


Q ss_pred             CC----CcEEEEE----CCCceEE-ee-----ccCCCee-----EEEEcCCCCEEEE--EeCCC--eEEEEEcCCCCccc
Q 042434          373 SD----KDIRILN----LGTYAER-VI-----SEEHPIT-----SLSVSVDCKNFIV--NLNSQ--EIHMWDVAGKWEKP  429 (517)
Q Consensus       373 ~d----g~i~i~d----~~~~~~~-~~-----~~~~~i~-----~~~~s~~~~~l~~--~~~d~--~i~~~d~~~~~~~~  429 (517)
                      ..    ..|.+||    ..+++.. ..     .+...+.     .+.|+|||+.++.  +..+|  .|.+||+.++.  .
T Consensus       272 ~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~--~  349 (719)
T 1z68_A          272 KRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN--A  349 (719)
T ss_dssp             ESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT--C
T ss_pred             ccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc--e
Confidence            32    2488899    7776622 22     3444455     7899999996654  43455  57777776542  3


Q ss_pred             eEEeCcccCceEEEeecCCCCCcEEEEecCC-----CcEEEEecCC--Cc-eeEEec----CCCCCeeEEEecCCCCcEE
Q 042434          430 FKYTGHSQNKYVIRSCFGGLDGTFIASGSEN-----SQIYIWNRRN--SK-PIEILS----GHSMTVNCVSWNPKRPKML  497 (517)
Q Consensus       430 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~--~~-~~~~~~----~h~~~v~~v~~~~~~~~~l  497 (517)
                      ..+..+....  ....+ + +++.|+..+.+     +..++|.+..  +. ....+.    +|...+..+.|+|++..++
T Consensus       350 ~~lt~~~~~v--~~~~~-~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~  425 (719)
T 1z68_A          350 IQITSGKWEA--INIFR-V-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYA  425 (719)
T ss_dssp             EECSCSSSCE--EEEEE-E-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEE
T ss_pred             EecccCceEE--EEEEE-E-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEE
Confidence            3443332221  12233 3 66666555544     7888887653  42 123333    2667788999999996555


Q ss_pred             EEeeCC--CcEEEeCCCCCC
Q 042434          498 ASASDD--HTIRIWGPCQSS  515 (517)
Q Consensus       498 ~s~~~d--g~v~iw~~~~~~  515 (517)
                      ++++.+  ..+.+|++.+++
T Consensus       426 ~~~s~~~~p~~~l~d~~~g~  445 (719)
T 1z68_A          426 LVCYGPGIPISTLHDGRTDQ  445 (719)
T ss_dssp             EEECCBSSCEEEEECSSSCC
T ss_pred             EEcCCCCCCeEEEEECCCCC
Confidence            566554  578899987765

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.86  E-value=1.5e-19  Score=172.37  Aligned_cols=276  Identities=8%  Similarity=0.046  Sum_probs=180.7

Q ss_pred             EEEEeeCC--CcEEEEEecC-CCeeeEEEEec-cCCCCEEEEEECCCCCeEEEEeCCCeEEEEECC-CCcEEEEeCC-CC
Q 042434          236 YLASSSSD--CSAIIWKVLE-DSKLTLKHTLR-SHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVE-TGICKHTFGD-HG  309 (517)
Q Consensus       236 ~l~t~~~d--g~i~iw~~~~-~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~-~~  309 (517)
                      +++.|+..  +.|.+|+++. ...+....... .....+..++|+||+++|++++.+ .|.+|++. +++....... ..
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~   82 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG   82 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence            35556543  5688887743 23333333322 234568899999999999998888 99999997 7876543321 11


Q ss_pred             CceEEEEEeCCCCe--EEEee-------------CCCceeEEEEeCCCCeeEeeeC---cCCCceEEEEEccCCCEEEEE
Q 042434          310 FIVSSCAWFPDSKR--LVCGS-------------SDTEKGIFMCDCDGNEIKAWRG---TRIPKVLDLAVTPDGENLISV  371 (517)
Q Consensus       310 ~~v~~i~~~~~~~~--l~~~~-------------~d~~v~i~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~  371 (517)
                      +.+.+++|+|+|++  ++++.             .++.+.+|..+..+........   .....+.+++|+|+|++++++
T Consensus        83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~  162 (365)
T 1jof_A           83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA  162 (365)
T ss_dssp             SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred             CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEE
Confidence            23556899999994  44553             5788444444434443322221   233478999999999988877


Q ss_pred             eC-CCcEEEEECC-CceEE---eec---cCCCeeEEEEcCCCCEEEEEeC-CCeEEEEEcCC--CCcc--ceEEeCccc-
Q 042434          372 LS-DKDIRILNLG-TYAER---VIS---EEHPITSLSVSVDCKNFIVNLN-SQEIHMWDVAG--KWEK--PFKYTGHSQ-  437 (517)
Q Consensus       372 ~~-dg~i~i~d~~-~~~~~---~~~---~~~~i~~~~~s~~~~~l~~~~~-d~~i~~~d~~~--~~~~--~~~~~~~~~-  437 (517)
                      +. ++.|++||+. +++..   ...   +...+..++|+|+|++++++.. ++.|.+|++..  +...  ...+..... 
T Consensus       163 ~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~  242 (365)
T 1jof_A          163 DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPG  242 (365)
T ss_dssp             ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTT
T ss_pred             cCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCC
Confidence            64 6799999998 55421   121   2566899999999999888765 78999998753  2111  111211111 


Q ss_pred             --C-c------eEEEeec-CCCCCcEEEEecCCC------cEEEEecC-CCceeE---EecCCCCCeeEEEecC---CCC
Q 042434          438 --N-K------YVIRSCF-GGLDGTFIASGSENS------QIYIWNRR-NSKPIE---ILSGHSMTVNCVSWNP---KRP  494 (517)
Q Consensus       438 --~-~------~~i~~~~-~s~~~~~l~~~~~dg------~i~iwd~~-~~~~~~---~~~~h~~~v~~v~~~~---~~~  494 (517)
                        . .      .....+. ++|||++|++++.+.      .|.+|++. ++++..   ....+...+..++|+|   +| 
T Consensus       243 ~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg-  321 (365)
T 1jof_A          243 IPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD-  321 (365)
T ss_dssp             CCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT-
T ss_pred             cCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCC-
Confidence              0 1      0244555 799999988776432      89999986 666543   2334555678899999   78 


Q ss_pred             cEEEEeeC-CCcEEEeCCCC
Q 042434          495 KMLASASD-DHTIRIWGPCQ  513 (517)
Q Consensus       495 ~~l~s~~~-dg~v~iw~~~~  513 (517)
                      .+|++++. ++.|.+|+++.
T Consensus       322 ~~l~v~~~~~~~v~v~~~~~  341 (365)
T 1jof_A          322 EWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             TEEEEECSSSCEEEEEEEET
T ss_pred             CEEEEEEcCCCeEEEEEEch
Confidence            57777765 58999998764

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.85  E-value=2.7e-20  Score=179.81  Aligned_cols=289  Identities=12%  Similarity=0.029  Sum_probs=189.3

Q ss_pred             CCCcccEEEeccccCc-----EEEEEECCCCCEEEEeeCC---CcEEEEEecCCCeeeEEEEeccCCCCE-EEEEECCCC
Q 042434          209 QIPTETVQILTEHKNE-----VWFVQFSNNGEYLASSSSD---CSAIIWKVLEDSKLTLKHTLRSHQNPV-SFVAWSPDD  279 (517)
Q Consensus       209 ~~~~~~~~~l~~h~~~-----v~~~~~s~~~~~l~t~~~d---g~i~iw~~~~~~~~~~~~~~~~h~~~v-~~l~~s~~~  279 (517)
                      ......+..+..+...     +.+++|||||++|+.+...   ..|.+|+..++.   . ..+..+...+ ..+.|+|||
T Consensus        17 ~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~---~-~~l~~~~~~~~~~~~~spdg   92 (396)
T 3c5m_A           17 SDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQ---A-VQLTEGKGDNTFGGFISTDE   92 (396)
T ss_dssp             TTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTE---E-EECCCSSCBCTTTCEECTTS
T ss_pred             CCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCc---E-EEeecCCCCccccceECCCC
Confidence            3444556666655444     6788999999998877543   367788876542   2 2233333333 337899999


Q ss_pred             CeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEE-------------------EEEeCCCCeEEEeeC---CCceeEEE
Q 042434          280 TKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSS-------------------CAWFPDSKRLVCGSS---DTEKGIFM  337 (517)
Q Consensus       280 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-------------------i~~~~~~~~l~~~~~---d~~v~i~~  337 (517)
                      ++|+.++.++.|.+||+.+++.......+......                   +.|+|+++.++.+..   ++...++.
T Consensus        93 ~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~  172 (396)
T 3c5m_A           93 RAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIK  172 (396)
T ss_dssp             SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEE
T ss_pred             CEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEE
Confidence            99999999999999999998876665544433222                   345677776655431   33345999


Q ss_pred             EeCCCCeeEeeeCcCCCceEEEEEcc-CCCEEEEEeCC------CcEEEEECCCce-EEeecc--CCCeeEEEEcCCCCE
Q 042434          338 CDCDGNEIKAWRGTRIPKVLDLAVTP-DGENLISVLSD------KDIRILNLGTYA-ERVISE--EHPITSLSVSVDCKN  407 (517)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d------g~i~i~d~~~~~-~~~~~~--~~~i~~~~~s~~~~~  407 (517)
                      |+..+......... ...+..+.|+| ++..++..+.+      ..|.+||+.+.. .....+  ...+..++|+|+|+.
T Consensus       173 ~d~~~g~~~~~~~~-~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~  251 (396)
T 3c5m_A          173 VDIETGELEVIHQD-TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSA  251 (396)
T ss_dssp             EETTTCCEEEEEEE-SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSC
T ss_pred             EECCCCcEEeeccC-CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCE
Confidence            99887665544432 34688999999 78877766543      368899987765 222222  225778999999998


Q ss_pred             EEEEeCC-----CeEEEEEcCCCCccceEEeCcccCceEEEeecCCC-CCcEEEEec----------------CCCcEEE
Q 042434          408 FIVNLNS-----QEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGL-DGTFIASGS----------------ENSQIYI  465 (517)
Q Consensus       408 l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~----------------~dg~i~i  465 (517)
                      ++..+.+     +.|++||+.++...  .+.....    .. ..|+| ||+++++++                .++.|++
T Consensus       252 l~~~~~~~~~~~~~l~~~d~~~g~~~--~l~~~~~----~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~  324 (396)
T 3c5m_A          252 MAYVSYFKGQTDRVIYKANPETLENE--EVMVMPP----CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYV  324 (396)
T ss_dssp             EEEEEEETTTCCEEEEEECTTTCCEE--EEEECCS----EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEE
T ss_pred             EEEEecCCCCccceEEEEECCCCCeE--EeeeCCC----CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEE
Confidence            8777543     44999999765222  1111111    11 44578 999888754                3478999


Q ss_pred             EecCCCceeEEecCCCC-----------CeeEEEecCCCCcEEEEee-CCCcEEEeCC
Q 042434          466 WNRRNSKPIEILSGHSM-----------TVNCVSWNPKRPKMLASAS-DDHTIRIWGP  511 (517)
Q Consensus       466 wd~~~~~~~~~~~~h~~-----------~v~~v~~~~~~~~~l~s~~-~dg~v~iw~~  511 (517)
                      ||+.+++.. .+..+..           .+..++|+|+|. .|+.++ .++...+|.+
T Consensus       325 ~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~~~s~~~~~~~l~~~  380 (396)
T 3c5m_A          325 LNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDD-GVLFTSDFEGVPAIYIA  380 (396)
T ss_dssp             EETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSS-EEEEEECTTSSCEEEEE
T ss_pred             EecccCceE-EccCCCCccccccccccCCCCCceEccCCC-eEEEEecCCCCceEEEE
Confidence            999888754 3444443           267789999994 555544 4566555544

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.85  E-value=2.7e-19  Score=173.99  Aligned_cols=164  Identities=17%  Similarity=0.153  Sum_probs=133.8

Q ss_pred             cccCcEEEEEECCCCCEEE----EeeCCCcEEEEEecCC--------CeeeEEEEeccCCCCEEEEEECCC-CCeEEEEe
Q 042434          220 EHKNEVWFVQFSNNGEYLA----SSSSDCSAIIWKVLED--------SKLTLKHTLRSHQNPVSFVAWSPD-DTKLLTCG  286 (517)
Q Consensus       220 ~h~~~v~~~~~s~~~~~l~----t~~~dg~i~iw~~~~~--------~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~  286 (517)
                      .|.+.|++++|+|+|++||    +|+.|+.|+|||+.+.        ..+.....+.+|...|.+++|+|+ +.+|++++
T Consensus        90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s  169 (434)
T 2oit_A           90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL  169 (434)
T ss_dssp             CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred             cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence            3678899999999999999    7889999999998654        222345667789999999999998 78999999


Q ss_pred             CCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcC------CCceEEEE
Q 042434          287 NAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTR------IPKVLDLA  360 (517)
Q Consensus       287 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~------~~~i~~~~  360 (517)
                      .||+|++||++++........|...|.+++|+|+|++|++|+.||.  |.+||.++.....+..+.      ...+.++.
T Consensus       170 ~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~  247 (434)
T 2oit_A          170 ADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGT--VVQYLPTLQEKKVIPCPPFYESDHPVRVLDVL  247 (434)
T ss_dssp             TTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSC--EEEECTTCCEEEEECCCTTCCTTSCEEEEEEE
T ss_pred             CCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCc--EEEEccCCcccccccCCcccCCCCceeEEEEE
Confidence            9999999999999777666678899999999999999999999999  888888855444443221      23789999


Q ss_pred             EccCCCEEEEEe-CCC------cEEEEECCCc
Q 042434          361 VTPDGENLISVL-SDK------DIRILNLGTY  385 (517)
Q Consensus       361 ~~~~~~~l~~~~-~dg------~i~i~d~~~~  385 (517)
                      |++++.++++.+ .+|      .+++|+++..
T Consensus       248 w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          248 WIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             EEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             EecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            999887765433 343      3899999764

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.84  E-value=3e-19  Score=186.58  Aligned_cols=268  Identities=11%  Similarity=0.053  Sum_probs=181.5

Q ss_pred             cEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCC-----EEEEEECCCCCeEEEEeCC---------C
Q 042434          224 EVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNP-----VSFVAWSPDDTKLLTCGNA---------E  289 (517)
Q Consensus       224 ~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~-----v~~l~~s~~~~~l~s~~~d---------g  289 (517)
                      ...+++|+|||++++++  ||.|++||+.++..   ...+.+|...     ...++|||||++|++++.+         +
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~   92 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNS---SVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA   92 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCE---EEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCce---EEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence            45578999999999986  89999999987753   3445666532     2447899999999998876         5


Q ss_pred             eEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeC-cCCC--------------
Q 042434          290 VLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRG-TRIP--------------  354 (517)
Q Consensus       290 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~-~~~~--------------  354 (517)
                      .+.+||+.+++.. .+..+...+...+|||||+.|+.+. ++.  |++|+..+.....+.. ....              
T Consensus        93 ~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~--i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee  168 (740)
T 4a5s_A           93 SYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NND--IYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEE  168 (740)
T ss_dssp             EEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTE--EEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHH
T ss_pred             EEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCe--EEEEECCCCceEEEcCCCCccceecCcccccccch
Confidence            6779999998754 4667778899999999999999985 455  9999987655544332 1111              


Q ss_pred             ---ceEEEEEccCCCEEEEEeCCC------------------------------------cEEEEECCC---c---eE-E
Q 042434          355 ---KVLDLAVTPDGENLISVLSDK------------------------------------DIRILNLGT---Y---AE-R  388 (517)
Q Consensus       355 ---~i~~~~~~~~~~~l~~~~~dg------------------------------------~i~i~d~~~---~---~~-~  388 (517)
                         ....+.|||||+.|+.++.|.                                    .|++||+.+   +   .. .
T Consensus       169 ~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~  248 (740)
T 4a5s_A          169 VFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQ  248 (740)
T ss_dssp             TSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEE
T ss_pred             hcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEE
Confidence               123589999999998875321                                    488899988   6   32 2


Q ss_pred             eec------cCCCeeEEEEcCCCCEEEEEeC----CCeEEEEEcCCCC-----ccceEE--eCcccCceE--EEeecCCC
Q 042434          389 VIS------EEHPITSLSVSVDCKNFIVNLN----SQEIHMWDVAGKW-----EKPFKY--TGHSQNKYV--IRSCFGGL  449 (517)
Q Consensus       389 ~~~------~~~~i~~~~~s~~~~~l~~~~~----d~~i~~~d~~~~~-----~~~~~~--~~~~~~~~~--i~~~~~s~  449 (517)
                      ...      +...+..++|+|||+.++....    +..|.+||+.++.     .....+  .++......  .....|+|
T Consensus       249 l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fsp  328 (740)
T 4a5s_A          249 ITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTL  328 (740)
T ss_dssp             ECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECT
T ss_pred             ecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcC
Confidence            221      5556889999999997665543    2379999998763     112222  223221110  11344699


Q ss_pred             CCcEEE-EecC-C--CcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeC
Q 042434          450 DGTFIA-SGSE-N--SQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASD  502 (517)
Q Consensus       450 ~~~~l~-~~~~-d--g~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~  502 (517)
                      ||+.++ ..+. +  ..|++||..+++... +......|..+.+ +++..++++++.
T Consensus       329 DG~~l~~~~s~~~G~~~l~~~~~~~~~~~~-lT~g~~~v~~~~~-~d~~~i~f~~~~  383 (740)
T 4a5s_A          329 DGNSFYKIISNEEGYRHICYFQIDKKDCTF-ITKGTWEVIGIEA-LTSDYLYYISNE  383 (740)
T ss_dssp             TSSEEEEEEECTTSCEEEEEEETTCSSCEE-SCCSSSCEEEEEE-ECSSEEEEEESC
T ss_pred             CCCEEEEEEEcCCCceEEEEEECCCCceEe-cccCCEEEEEEEE-EeCCEEEEEEec
Confidence            999876 5553 3  368899988766554 4434556666543 335355556554

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.83  E-value=2.3e-18  Score=163.38  Aligned_cols=279  Identities=13%  Similarity=0.085  Sum_probs=192.4

Q ss_pred             CcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEee----------CCCcEEEEEecCCCeeeEEEEecc---CCCC
Q 042434          203 HCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSS----------SDCSAIIWKVLEDSKLTLKHTLRS---HQNP  269 (517)
Q Consensus       203 ~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~----------~dg~i~iw~~~~~~~~~~~~~~~~---h~~~  269 (517)
                      ....++....+.+..+..+..+  .++|+|||+++++++          .++.|.+||..+......+.....   +...
T Consensus        32 ~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~  109 (361)
T 2oiz_A           32 RVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNY  109 (361)
T ss_dssp             EEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCC
T ss_pred             eEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCC
Confidence            4445565566777777777666  899999999999886          367799999865543332222111   2345


Q ss_pred             EEEEEECCCCCeEEEEeC--CCeEEEEECCCCcEEEE-eCCCCCceEEEEEeCCC-CeEEEeeCCCceeEEEEeCCCCee
Q 042434          270 VSFVAWSPDDTKLLTCGN--AEVLKLWDVETGICKHT-FGDHGFIVSSCAWFPDS-KRLVCGSSDTEKGIFMCDCDGNEI  345 (517)
Q Consensus       270 v~~l~~s~~~~~l~s~~~--dg~i~iwd~~~~~~~~~-~~~~~~~v~~i~~~~~~-~~l~~~~~d~~v~i~~~~~~~~~~  345 (517)
                      ...++|+|||++|+++..  +++|.+||+.+++.+.. +....  ...+.+.|++ ..+++.+.||.+.++.++..+...
T Consensus       110 p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~--~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~  187 (361)
T 2oiz_A          110 DGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG--CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVA  187 (361)
T ss_dssp             GGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT--EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEE
T ss_pred             cceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC--cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEe
Confidence            678999999999998864  57999999999998887 64322  2335667765 677888889984444444334433


Q ss_pred             Eeee-----CcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceEEeec----------c----CCCeeEEEEcCCCC
Q 042434          346 KAWR-----GTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVIS----------E----EHPITSLSVSVDCK  406 (517)
Q Consensus       346 ~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----------~----~~~i~~~~~s~~~~  406 (517)
                      ....     .... ....+.+++++..++..+.++.+.++|+.........          .    ......++++|+++
T Consensus       188 ~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~  266 (361)
T 2oiz_A          188 SQSRSKQMFSVKD-DPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASG  266 (361)
T ss_dssp             EEEECCCCSCTTT-SCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTT
T ss_pred             eeccccceEcCCC-CceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCC
Confidence            1111     0111 1123334677777888888999999998754311100          0    11122378999988


Q ss_pred             EEEEEeC-----------CCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCC--ce
Q 042434          407 NFIVNLN-----------SQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS--KP  473 (517)
Q Consensus       407 ~l~~~~~-----------d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~--~~  473 (517)
                      .++++..           .+.|.+||+.+. +.+..+..+.     ...+.++|||++|++++. +.|.+||..++  +.
T Consensus       267 ~lyv~~~~~~~~~~~~~~~~~v~viD~~t~-~~v~~i~~~~-----p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~  339 (361)
T 2oiz_A          267 RMYVFMHPDGKEGTHKFPAAEIWVMDTKTK-QRVARIPGRD-----ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKL  339 (361)
T ss_dssp             EEEEEEESSCCTTCTTCCCSEEEEEETTTT-EEEEEEECTT-----CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEE
T ss_pred             eEEEEEccCCCcccccCCCceEEEEECCCC-cEEEEEecCC-----eeEEEECCCCCEEEEeCC-CeEEEEECCCCccee
Confidence            8887653           348999999887 5666665554     334455899999999887 99999999999  99


Q ss_pred             eEEecCCCCCeeEEEecCCC
Q 042434          474 IEILSGHSMTVNCVSWNPKR  493 (517)
Q Consensus       474 ~~~~~~h~~~v~~v~~~~~~  493 (517)
                      +.++..+......++++|+|
T Consensus       340 ~~~i~~~G~~P~~~~~~p~G  359 (361)
T 2oiz_A          340 LRTIEGAAEASLQVQFHPVG  359 (361)
T ss_dssp             EEEETTSCSSEEEEEECCCS
T ss_pred             eEEeccCCCCcEEEEecCCC
Confidence            99987777888999999998

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.83  E-value=1.2e-17  Score=153.67  Aligned_cols=244  Identities=14%  Similarity=0.159  Sum_probs=180.2

Q ss_pred             cCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCC------CCCceEEEEEe-CCCCeEEEeeC-CCceeEE
Q 042434          265 SHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGD------HGFIVSSCAWF-PDSKRLVCGSS-DTEKGIF  336 (517)
Q Consensus       265 ~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------~~~~v~~i~~~-~~~~~l~~~~~-d~~v~i~  336 (517)
                      ++-..+.+++++++++++++...++.|.+||.. ++....+..      +...+.++++. +++..+++... ++.  |+
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~--i~  103 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQ--IQ  103 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCE--EE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCE--EE
Confidence            345678999999999988888889999999986 666666632      33568899995 66666655533 566  88


Q ss_pred             EEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceEEee---ccCCCeeEEEEcCCCCEEEEEeC
Q 042434          337 MCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVI---SEEHPITSLSVSVDCKNFIVNLN  413 (517)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~~~~~i~~~~~s~~~~~l~~~~~  413 (517)
                      .|+..+..+..+.......+..++++++|+.+++...++.|.+||.........   .....+..++++++++.+++...
T Consensus       104 ~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~  183 (286)
T 1q7f_A          104 IYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR  183 (286)
T ss_dssp             EECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG
T ss_pred             EECCCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEECC
Confidence            899777777666544445789999999999888777889999999765443333   23346899999999998777788


Q ss_pred             CCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCC-cEEEEecCCCceeEEecCCC--CCeeEEEec
Q 042434          414 SQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENS-QIYIWNRRNSKPIEILSGHS--MTVNCVSWN  490 (517)
Q Consensus       414 d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~h~--~~v~~v~~~  490 (517)
                      ++.|.+||....  ....+..... ......++++++|+++++...++ .|.+||. +++.+..+..+.  ..+.+++++
T Consensus       184 ~~~i~~~~~~g~--~~~~~~~~g~-~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~  259 (286)
T 1q7f_A          184 AHCVKVFNYEGQ--YLRQIGGEGI-TNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALM  259 (286)
T ss_dssp             GTEEEEEETTCC--EEEEESCTTT-SCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEE
T ss_pred             CCEEEEEcCCCC--EEEEEccCCc-cCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEEC
Confidence            999999998543  3333332211 11234455689999888888776 9999995 577777776543  347899999


Q ss_pred             CCCCcEEEEeeCCCcEEEeCCCCCCCC
Q 042434          491 PKRPKMLASASDDHTIRIWGPCQSSEV  517 (517)
Q Consensus       491 ~~~~~~l~s~~~dg~v~iw~~~~~~~v  517 (517)
                      |+| .++++ +.|+.|++|++....+|
T Consensus       260 ~~g-~l~vs-~~~~~v~v~~~~~~~pv  284 (286)
T 1q7f_A          260 DDG-SVVLA-SKDYRLYIYRYVQLAPV  284 (286)
T ss_dssp             TTT-EEEEE-ETTTEEEEEECSCCCCT
T ss_pred             CCC-cEEEE-CCCCeEEEEEccccccc
Confidence            999 67777 67999999999876654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.83  E-value=1.1e-18  Score=180.47  Aligned_cols=290  Identities=10%  Similarity=0.105  Sum_probs=199.4

Q ss_pred             EEeccccCcEEEEEECCCCCEEEEe--eCCCcEEEEEecCCCeeeEEEEeccCCCCEE---------EEEEC--CCCCe-
Q 042434          216 QILTEHKNEVWFVQFSNNGEYLASS--SSDCSAIIWKVLEDSKLTLKHTLRSHQNPVS---------FVAWS--PDDTK-  281 (517)
Q Consensus       216 ~~l~~h~~~v~~~~~s~~~~~l~t~--~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~---------~l~~s--~~~~~-  281 (517)
                      ..+.+|...+..++|++++-++++.  +.++...||....+..   ...+..|...+.         ...|+  |||+. 
T Consensus        17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~   93 (662)
T 3azo_A           17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGA---EESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPL   93 (662)
T ss_dssp             HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSC---EEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCE
T ss_pred             HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCC---cceeCCCCccccccccccCCccceeeeecCCCeE
Confidence            3467899999999999887777777  5688999999744432   345666766666         56565  99998 


Q ss_pred             EEEEeC-CCeEEEEECC--C-CcEEEEeCC-----CCCceEEEEEeCCCCeEEEeeCC--------CceeEEEEeCCC--
Q 042434          282 LLTCGN-AEVLKLWDVE--T-GICKHTFGD-----HGFIVSSCAWFPDSKRLVCGSSD--------TEKGIFMCDCDG--  342 (517)
Q Consensus       282 l~s~~~-dg~i~iwd~~--~-~~~~~~~~~-----~~~~v~~i~~~~~~~~l~~~~~d--------~~v~i~~~~~~~--  342 (517)
                      |+.++. +..|.+|++.  + +. ...+..     +...+.+++|+|||+.|++++.+        +...|+.|+..+  
T Consensus        94 la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~  172 (662)
T 3azo_A           94 LVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSA  172 (662)
T ss_dssp             EEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTT
T ss_pred             EEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCc
Confidence            776554 5677777775  3 44 444544     66788999999999999988865        224599999987  


Q ss_pred             ----CeeEeee-CcCCCceEEEEEccCCCEEEEEeCC--------CcEEEEECC-Cc---e-EEeec-cCCCeeEEEEcC
Q 042434          343 ----NEIKAWR-GTRIPKVLDLAVTPDGENLISVLSD--------KDIRILNLG-TY---A-ERVIS-EEHPITSLSVSV  403 (517)
Q Consensus       343 ----~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~i~d~~-~~---~-~~~~~-~~~~i~~~~~s~  403 (517)
                          .....+. .+. ..+..++|+|||++|+.++.+        ..|++||+. ++   . ..... +...+..+.|+|
T Consensus       173 ~~~~~~~~~l~~~~~-~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~sp  251 (662)
T 3azo_A          173 AADRSAVRELSDDAH-RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAP  251 (662)
T ss_dssp             TTCGGGSEESSCSCS-SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECT
T ss_pred             cccCCceeEEEecCC-CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECC
Confidence                6665555 333 478889999999999987755        379999998 45   3 23333 357889999999


Q ss_pred             CCCEEEEEeCCC--eEEEEEcCCCCccceEEeCcccCc----e--EEEeecCCCCCcEEEEecCCCcEEEE--ecCCCce
Q 042434          404 DCKNFIVNLNSQ--EIHMWDVAGKWEKPFKYTGHSQNK----Y--VIRSCFGGLDGTFIASGSENSQIYIW--NRRNSKP  473 (517)
Q Consensus       404 ~~~~l~~~~~d~--~i~~~d~~~~~~~~~~~~~~~~~~----~--~i~~~~~s~~~~~l~~~~~dg~i~iw--d~~~~~~  473 (517)
                      ||+.++++..++  .|.+||+.++ .. ..+..+....    +  .+..+.++++++++++++. +.+++|  |..+++ 
T Consensus       252 dg~l~~~~~~~~~~~l~~~~~~~~-~~-~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-  327 (662)
T 3azo_A          252 DGSLIVATDRTGWWNLHRVDPATG-AA-TQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-  327 (662)
T ss_dssp             TSCEEEEECTTSSCEEEEECTTTC-CE-EESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-
T ss_pred             CCeEEEEECCCCCeEEEEEECCCC-ce-eecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-
Confidence            999777777777  5666666443 22 2222111110    0  0223445789999999998 999999  655555 


Q ss_pred             eEEecCCCCCeeEE-EecCCCCcEEEEeeCCCc--EEEeCCCCCC
Q 042434          474 IEILSGHSMTVNCV-SWNPKRPKMLASASDDHT--IRIWGPCQSS  515 (517)
Q Consensus       474 ~~~~~~h~~~v~~v-~~~~~~~~~l~s~~~dg~--v~iw~~~~~~  515 (517)
                      +..+..|...+..+ +++++. .++++++.+..  |.+|++.+++
T Consensus       328 ~~~l~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~i~~~d~~~g~  371 (662)
T 3azo_A          328 LVDAAGPWTEWAATLTVSGTR-AVGVAASPRTAYEVVELDTVTGR  371 (662)
T ss_dssp             EEECCSSCCEEEEEEEEETTE-EEEEEEETTEEEEEEEEETTTCC
T ss_pred             EEEecCCCCeEEEEEecCCCE-EEEEEcCCCCCCEEEEEECCCCc
Confidence            67788888888877 555444 34455555544  5555655543

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.82  E-value=2.4e-18  Score=164.03  Aligned_cols=243  Identities=9%  Similarity=0.068  Sum_probs=164.0

Q ss_pred             ccCcEEEEEECCCCCEEEEeeCCCcEEEEEec-CCCeeeEEEEeccCCCCEEEEEECCCCCe--EEEEe-----------
Q 042434          221 HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVL-EDSKLTLKHTLRSHQNPVSFVAWSPDDTK--LLTCG-----------  286 (517)
Q Consensus       221 h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~-~~~~~~~~~~~~~h~~~v~~l~~s~~~~~--l~s~~-----------  286 (517)
                      +...+..++|+|+|++|++++.+ .|.+|++. ++ ..........+ +.+.+++|+|||++  +++++           
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g-~~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~  114 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPT-EIVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPF  114 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETT-EEEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred             CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCC-CEEEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceecccee
Confidence            44578899999999999998887 99999996 44 22222222212 23566899999994  55553           


Q ss_pred             --CCCeEEEEECC-CCcEEEEeC----CCCCceEEEEEeCCCCeEEEeeC-CCceeEEEEeCC-CCeeE---eeeCc-CC
Q 042434          287 --NAEVLKLWDVE-TGICKHTFG----DHGFIVSSCAWFPDSKRLVCGSS-DTEKGIFMCDCD-GNEIK---AWRGT-RI  353 (517)
Q Consensus       287 --~dg~i~iwd~~-~~~~~~~~~----~~~~~v~~i~~~~~~~~l~~~~~-d~~v~i~~~~~~-~~~~~---~~~~~-~~  353 (517)
                        .+|.+.+|++. +++....+.    .+...+.+++|+|||++++++.. ++.  |++|+.. +..+.   ..... +.
T Consensus       115 ~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~--v~~~~~~~~g~~~~~~~~~~~~~g  192 (365)
T 1jof_A          115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANK--LWTHRKLASGEVELVGSVDAPDPG  192 (365)
T ss_dssp             SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTE--EEEEEECTTSCEEEEEEEECSSTT
T ss_pred             ecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCE--EEEEEECCCCCEEEeeeEecCCCC
Confidence              68999999997 466554433    24567899999999998887764 455  7777765 33332   22211 23


Q ss_pred             CceEEEEEccCCCEEEEEeC-CCcEEEEECC--CceEE-----e--eccC----C-------CeeEEE-EcCCCCEEEEE
Q 042434          354 PKVLDLAVTPDGENLISVLS-DKDIRILNLG--TYAER-----V--ISEE----H-------PITSLS-VSVDCKNFIVN  411 (517)
Q Consensus       354 ~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~--~~~~~-----~--~~~~----~-------~i~~~~-~s~~~~~l~~~  411 (517)
                      ..+..++|+|+|+++++++. ++.|.+|++.  +++..     .  ....    .       .+..++ |+|||++++++
T Consensus       193 ~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~  272 (365)
T 1jof_A          193 DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS  272 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred             CCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEE
Confidence            46889999999999887775 6899999865  33321     1  1111    1       478899 99999998877


Q ss_pred             eCC-C-----eEEEEEcCCCCccce---EEeCcccCceEEEeecCCC---CCcEEEEecCC-CcEEEEecCCC
Q 042434          412 LNS-Q-----EIHMWDVAGKWEKPF---KYTGHSQNKYVIRSCFGGL---DGTFIASGSEN-SQIYIWNRRNS  471 (517)
Q Consensus       412 ~~d-~-----~i~~~d~~~~~~~~~---~~~~~~~~~~~i~~~~~s~---~~~~l~~~~~d-g~i~iwd~~~~  471 (517)
                      ..+ +     .|.+|++........   ....+...   ...+.++|   ||++|++++.+ +.|.+|++...
T Consensus       273 ~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~---~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          273 SRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSG---GHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCC---TTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCC---cccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            653 2     899999963212221   12112111   22345578   89999998865 89999998765

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.82  E-value=1.5e-17  Score=156.63  Aligned_cols=271  Identities=11%  Similarity=0.082  Sum_probs=191.0

Q ss_pred             CcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEE
Q 042434          223 NEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICK  302 (517)
Q Consensus       223 ~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~  302 (517)
                      ..|.++.|++++..++..+.++.++.|.   +   .....+..+...+.+++|+|++++++++..++.|.+||..+++..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~   79 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTIT---A---EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK   79 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEEE---C---EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE
T ss_pred             cccceeeecCCccceeEEeecccCcccc---c---ceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEE
Confidence            4567788999888888778888999993   2   233556667778899999999998888888999999999988866


Q ss_pred             EEeCCCCCceEEEEEeCCCCeEEEeeCC----CceeEEEEeCCCCeeEeee--CcCCCceEEEEEccCCCEEEEEeC---
Q 042434          303 HTFGDHGFIVSSCAWFPDSKRLVCGSSD----TEKGIFMCDCDGNEIKAWR--GTRIPKVLDLAVTPDGENLISVLS---  373 (517)
Q Consensus       303 ~~~~~~~~~v~~i~~~~~~~~l~~~~~d----~~v~i~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~---  373 (517)
                      .....+...+.+++++|+++++++...+    +.  |+.|+..+.......  ......+.+++++|+|+.+++...   
T Consensus        80 ~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~--i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~  157 (333)
T 2dg1_A           80 RPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGG--IFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYS  157 (333)
T ss_dssp             EEEECSSSSEEEEEECTTSCEEEEECTTSSSCCE--EEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBT
T ss_pred             EEeeCCCCCcceEEECCCCcEEEEeCCCCCCCce--EEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccc
Confidence            5544566789999999999888777655    45  899998876654322  122346889999999987776653   


Q ss_pred             ---CCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEE-eCCCeEEEEEcCCCCccceEEe----CcccCceEEEe
Q 042434          374 ---DKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVN-LNSQEIHMWDVAGKWEKPFKYT----GHSQNKYVIRS  444 (517)
Q Consensus       374 ---dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~----~~~~~~~~i~~  444 (517)
                         .+.|..+|..+.. .........+..++|+|+++.++++ +.++.|.+||+.........+.    ...........
T Consensus       158 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~  237 (333)
T 2dg1_A          158 TNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDS  237 (333)
T ss_dssp             TBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEE
T ss_pred             cCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCc
Confidence               3567777776544 2222333457889999999866554 5578999999964212211110    00001123445


Q ss_pred             ecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCC------CeeEEEecCCCCcEEEEeeC
Q 042434          445 CFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSM------TVNCVSWNPKRPKMLASASD  502 (517)
Q Consensus       445 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~------~v~~v~~~~~~~~~l~s~~~  502 (517)
                      +.++++|++.++...++.|.+||. +++.+..+..+..      .+.+++|+|++..+++++..
T Consensus       238 i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          238 CCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             EEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             eEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence            666889998888777899999998 5777776654433      68999999997444444443

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.81  E-value=7.2e-18  Score=160.02  Aligned_cols=269  Identities=11%  Similarity=0.123  Sum_probs=183.3

Q ss_pred             CCCEEEEee------CCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEe----------CCCeEEEEEC
Q 042434          233 NGEYLASSS------SDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCG----------NAEVLKLWDV  296 (517)
Q Consensus       233 ~~~~l~t~~------~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~----------~dg~i~iwd~  296 (517)
                      +++++++..      .|+.|.+||..+++   ...++..+..+  .++|+||++++++++          .++.|.+||.
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~---~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~   88 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGK---FLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDA   88 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCC---EEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEET
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCe---EEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEEC
Confidence            555555543      37899999987663   34555555554  899999999999886          3668999999


Q ss_pred             CCCcEEEEeCCC------CCceEEEEEeCCCCeEEEeeC--CCceeEEEEeCCCCeeEee-eCcCCCceEEEEEccCC-C
Q 042434          297 ETGICKHTFGDH------GFIVSSCAWFPDSKRLVCGSS--DTEKGIFMCDCDGNEIKAW-RGTRIPKVLDLAVTPDG-E  366 (517)
Q Consensus       297 ~~~~~~~~~~~~------~~~v~~i~~~~~~~~l~~~~~--d~~v~i~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~-~  366 (517)
                      .+++.+..+...      ......++++|||++++++..  ++.  |.+||......... ....  ....+.+.|++ .
T Consensus        89 ~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~--v~v~d~~~~~~~~~~i~~~--~~~~v~~~p~~~~  164 (361)
T 2oiz_A           89 DKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATS--IGIVDVAKGDYVEDVTAAA--GCWSVIPQPNRPR  164 (361)
T ss_dssp             TTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEE--EEEEETTTTEEEEEEGGGT--TEEEEEECTTSSS
T ss_pred             cCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCe--EEEEECCCCcEEEEEecCC--CcceeEEcCCCCe
Confidence            999988877532      345678999999999999875  455  88889887655332 2221  22335567765 5


Q ss_pred             EEEEEeCCCcEEEEECCC-ceEE-------eeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccce-EEeCcc-
Q 042434          367 NLISVLSDKDIRILNLGT-YAER-------VISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPF-KYTGHS-  436 (517)
Q Consensus       367 ~l~~~~~dg~i~i~d~~~-~~~~-------~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~-  436 (517)
                      .+++.+.||.+.+|+... ++..       ..........+.+++++..++..+.++.+.++|+........ .+.... 
T Consensus       165 ~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~  244 (361)
T 2oiz_A          165 SFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLND  244 (361)
T ss_dssp             EEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCH
T ss_pred             eEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCc
Confidence            778888999999998864 3322       111111122333467777888888889999999865422111 111000 


Q ss_pred             ---cCceE---EEeecCCCCCcEEEEecC-----------CCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEE
Q 042434          437 ---QNKYV---IRSCFGGLDGTFIASGSE-----------NSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLAS  499 (517)
Q Consensus       437 ---~~~~~---i~~~~~s~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s  499 (517)
                         .....   ...+.++|+++.++++..           .+.|.+||+.+++.+.++..+.  +.+++|+|+| ++|++
T Consensus       245 ~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg-~~l~v  321 (361)
T 2oiz_A          245 EDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQR-NLMLT  321 (361)
T ss_dssp             HHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTT-TEEEE
T ss_pred             cccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCC-CEEEE
Confidence               00000   001344788887776543           3489999999999999999876  9999999999 57777


Q ss_pred             eeCCCcEEEeCCCCC
Q 042434          500 ASDDHTIRIWGPCQS  514 (517)
Q Consensus       500 ~~~dg~v~iw~~~~~  514 (517)
                      ++. +.|.+||..++
T Consensus       322 ~n~-~~v~v~D~~t~  335 (361)
T 2oiz_A          322 LDG-GNVNVYDISQP  335 (361)
T ss_dssp             ECS-SCEEEEECSSS
T ss_pred             eCC-CeEEEEECCCC
Confidence            776 99999999987

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.81  E-value=2.5e-18  Score=179.59  Aligned_cols=304  Identities=13%  Similarity=0.093  Sum_probs=195.3

Q ss_pred             CCCcccccCCCcccEEEeccccCc-----EEEEEECCCCCEEEEeeCC---------CcEEEEEecCCCeeeEEEEeccC
Q 042434          201 EDHCCGRDQIPTETVQILTEHKNE-----VWFVQFSNNGEYLASSSSD---------CSAIIWKVLEDSKLTLKHTLRSH  266 (517)
Q Consensus       201 ~~~~~~~~~~~~~~~~~l~~h~~~-----v~~~~~s~~~~~l~t~~~d---------g~i~iw~~~~~~~~~~~~~~~~h  266 (517)
                      ++....++...+++...+.+|...     ...++|||||++|+.++.+         +.+.+||+.++..    ..+..|
T Consensus        35 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~----~~l~~~  110 (740)
T 4a5s_A           35 ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL----ITEERI  110 (740)
T ss_dssp             TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE----CCSSCC
T ss_pred             CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcE----EEcccC
Confidence            344455666666777778877643     2347889999999998876         5677999976632    346678


Q ss_pred             CCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEe-CCCCCce-----------------EEEEEeCCCCeEEEee
Q 042434          267 QNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTF-GDHGFIV-----------------SSCAWFPDSKRLVCGS  328 (517)
Q Consensus       267 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v-----------------~~i~~~~~~~~l~~~~  328 (517)
                      ...+...+|||||+.||.+ .++.|.+|++.+++..+.. .++...+                 ..+.|||||+.|+.++
T Consensus       111 ~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~  189 (740)
T 4a5s_A          111 PNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQ  189 (740)
T ss_dssp             CTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred             CCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEE
Confidence            8899999999999999987 4689999999988765432 2222222                 3489999999999875


Q ss_pred             CCC----------------------------------ceeEEEEeCCC---C---eeEeeeC-----cCCCceEEEEEcc
Q 042434          329 SDT----------------------------------EKGIFMCDCDG---N---EIKAWRG-----TRIPKVLDLAVTP  363 (517)
Q Consensus       329 ~d~----------------------------------~v~i~~~~~~~---~---~~~~~~~-----~~~~~i~~~~~~~  363 (517)
                      .|.                                  .+.+++||..+   .   ....+..     .+...+..++|+|
T Consensus       190 ~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp  269 (740)
T 4a5s_A          190 FNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT  269 (740)
T ss_dssp             EECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE
T ss_pred             EcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC
Confidence            432                                  23588888877   5   3433332     1445788999999


Q ss_pred             CCCEEEEEeC----CCcEEEEECCCce--------EEe--eccCCCe-----eEEEEcCCCCEEE-EEeC-CC--eEEEE
Q 042434          364 DGENLISVLS----DKDIRILNLGTYA--------ERV--ISEEHPI-----TSLSVSVDCKNFI-VNLN-SQ--EIHMW  420 (517)
Q Consensus       364 ~~~~l~~~~~----dg~i~i~d~~~~~--------~~~--~~~~~~i-----~~~~~s~~~~~l~-~~~~-d~--~i~~~  420 (517)
                      ||+.++....    +..|.+||+.+++        ...  ..+...+     ....|+|||+.++ ..+. +|  .|++|
T Consensus       270 dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~  349 (740)
T 4a5s_A          270 QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYF  349 (740)
T ss_dssp             TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEE
T ss_pred             CCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEE
Confidence            9996665543    2379999987764        111  2233333     3788999999877 5553 44  68888


Q ss_pred             EcCCCCccceEEeCcccCceEEEeecCCCCCcEEE-EecC----CC--cEEEEecCCCceeEEecC----CCCCeeEEEe
Q 042434          421 DVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIA-SGSE----NS--QIYIWNRRNSKPIEILSG----HSMTVNCVSW  489 (517)
Q Consensus       421 d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~~----dg--~i~iwd~~~~~~~~~~~~----h~~~v~~v~~  489 (517)
                      |+.++  ....+....-.   +.... .+|++.|+ +++.    .+  .|+..++..+.....+..    .......+.|
T Consensus       350 ~~~~~--~~~~lT~g~~~---v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~  423 (740)
T 4a5s_A          350 QIDKK--DCTFITKGTWE---VIGIE-ALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSF  423 (740)
T ss_dssp             ETTCS--SCEESCCSSSC---EEEEE-EECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEE
T ss_pred             ECCCC--ceEecccCCEE---EEEEE-EEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEE
Confidence            88764  22233322222   22211 23455444 4443    23  455556554444334432    3467889999


Q ss_pred             cCCCCcEEEEeeCC--CcEEEeCCCCCC
Q 042434          490 NPKRPKMLASASDD--HTIRIWGPCQSS  515 (517)
Q Consensus       490 ~~~~~~~l~s~~~d--g~v~iw~~~~~~  515 (517)
                      +|++..++++.+..  ..+.+++..+++
T Consensus       424 S~dg~~~~~~~s~~~~p~~~l~~~~~~~  451 (740)
T 4a5s_A          424 SKEAKYYQLRCSGPGLPLYTLHSSVNDK  451 (740)
T ss_dssp             CTTSSEEEEEECSBSSCEEEEEETTTTE
T ss_pred             CCCCCEEEEEeCCCCCCEEEEEECCCCc
Confidence            99995455555442  356777766543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.81  E-value=2.8e-17  Score=154.20  Aligned_cols=243  Identities=12%  Similarity=0.069  Sum_probs=179.0

Q ss_pred             CCCEEEEEECCCCCeEEEEeCC------------------------CeEEEEECCCCcEEEEeC-CCCCceEEEEEeCCC
Q 042434          267 QNPVSFVAWSPDDTKLLTCGNA------------------------EVLKLWDVETGICKHTFG-DHGFIVSSCAWFPDS  321 (517)
Q Consensus       267 ~~~v~~l~~s~~~~~l~s~~~d------------------------g~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~  321 (517)
                      -+.+.+++++|+|+++++...+                        ++|.+||..+++....+. .+-..+..++++|+|
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            4679999999999999888777                        479999999999887765 344578999999999


Q ss_pred             CeEEEeeCCCceeEEEEeCCCC--eeEeee--------CcCCCceEEEEEcc-CCCEEEEEe-CCCcEEEEECCCceEEe
Q 042434          322 KRLVCGSSDTEKGIFMCDCDGN--EIKAWR--------GTRIPKVLDLAVTP-DGENLISVL-SDKDIRILNLGTYAERV  389 (517)
Q Consensus       322 ~~l~~~~~d~~v~i~~~~~~~~--~~~~~~--------~~~~~~i~~~~~~~-~~~~l~~~~-~dg~i~i~d~~~~~~~~  389 (517)
                      +.+++...++.  |+.|+..+.  .+..+.        ..+......++++| ++..+++.+ .++.|++||........
T Consensus       103 ~l~v~d~~~~~--v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~  180 (329)
T 3fvz_A          103 NYWVTDVALHQ--VFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQ  180 (329)
T ss_dssp             CEEEEETTTTE--EEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEEE
T ss_pred             CEEEEECCCCE--EEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEE
Confidence            98888777777  889998876  444442        12333688999999 788877776 68999999955443332


Q ss_pred             ec-----------cCCCeeEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCC------CC
Q 042434          390 IS-----------EEHPITSLSVSVD-CKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGL------DG  451 (517)
Q Consensus       390 ~~-----------~~~~i~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~------~~  451 (517)
                      ..           ....+..++++|+ +..+++...++.|++||..++ .....+........ +..+.++|      +|
T Consensus       181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G-~~~~~~~~~~~~~~-~~~~~~~pg~~~~~~g  258 (329)
T 3fvz_A          181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK-EFVREIKHASFGRN-VFAISYIPGFLFAVNG  258 (329)
T ss_dssp             ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC-CEEEEECCTTTTTC-EEEEEEETTEEEEEEC
T ss_pred             eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC-cEEEEEeccccCCC-cceeeecCCEEEEeCC
Confidence            22           1123789999998 666777778899999999744 44444432221111 22334466      33


Q ss_pred             cEEEEecCCCcEEEEecCCCceeEEec---CCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCC
Q 042434          452 TFIASGSENSQIYIWNRRNSKPIEILS---GHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQS  514 (517)
Q Consensus       452 ~~l~~~~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~  514 (517)
                      +..++...+..|++||..+++.+..+.   ++...+.+|+++|+| .++++...++.|++|++...
T Consensus       259 ~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG-~lyvad~~~~~I~~~~~~~~  323 (329)
T 3fvz_A          259 KPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDG-TVYIGDAHTNTVWKFTLTEK  323 (329)
T ss_dssp             CCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTS-EEEEEESSSCCEEEEEEEEC
T ss_pred             CEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCC-CEEEEECCCCEEEEEeCCcc
Confidence            333333445689999999999998873   677789999999999 89999999999999998643

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.80  E-value=1.3e-16  Score=146.66  Aligned_cols=243  Identities=12%  Similarity=0.133  Sum_probs=178.1

Q ss_pred             cccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEec------cCCCCEEEEEE-CCCCCeEEEEeC-CCeE
Q 042434          220 EHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLR------SHQNPVSFVAW-SPDDTKLLTCGN-AEVL  291 (517)
Q Consensus       220 ~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~------~h~~~v~~l~~-s~~~~~l~s~~~-dg~i  291 (517)
                      +|-..+.+++++++|+++++.+.++.|.+|+.. +.   ....+.      ++...+..+++ .+++.++++... ++.|
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~---~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i  102 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GR---FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQI  102 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SC---EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-Cc---EEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEE
Confidence            566789999999999988888889999999975 32   223332      24467899999 577776666643 8899


Q ss_pred             EEEECCCCcEEEEeCC-CCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeC-cCCCceEEEEEccCCCEEE
Q 042434          292 KLWDVETGICKHTFGD-HGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRG-TRIPKVLDLAVTPDGENLI  369 (517)
Q Consensus       292 ~iwd~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~  369 (517)
                      .+|| .+++.+..+.. +...+.+++++|+++.+++...++.  |+.|+..+.....+.. .....+..++++++|+.++
T Consensus       103 ~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~--i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v  179 (286)
T 1q7f_A          103 QIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMR--VIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFI  179 (286)
T ss_dssp             EEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTE--EEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEE
T ss_pred             EEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCE--EEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEE
Confidence            9999 57777776643 3467899999999998777777777  8889988776665543 2334689999999999877


Q ss_pred             EEeCCCcEEEEECCCceEEeecc---CCCeeEEEEcCCCCEEEEEeCCC-eEEEEEcCCCCccceEEeCcccCceEEEee
Q 042434          370 SVLSDKDIRILNLGTYAERVISE---EHPITSLSVSVDCKNFIVNLNSQ-EIHMWDVAGKWEKPFKYTGHSQNKYVIRSC  445 (517)
Q Consensus       370 ~~~~dg~i~i~d~~~~~~~~~~~---~~~i~~~~~s~~~~~l~~~~~d~-~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~  445 (517)
                      +...++.|++||...........   ...+..++++++|+.+++...++ .|.+||..+  .....+..+..... ...+
T Consensus       180 ~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g--~~~~~~~~~~~~~~-~~~i  256 (286)
T 1q7f_A          180 SDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG--QLISALESKVKHAQ-CFDV  256 (286)
T ss_dssp             EEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS--CEEEEEEESSCCSC-EEEE
T ss_pred             EECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC--CEEEEEcccCCCCc-ceeE
Confidence            77789999999986554333322   25688999999998888887776 999999654  33344433322211 3345


Q ss_pred             cCCCCCcEEEEecCCCcEEEEecCCCce
Q 042434          446 FGGLDGTFIASGSENSQIYIWNRRNSKP  473 (517)
Q Consensus       446 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~  473 (517)
                      .++|+|+++++ +.|+.|++|+.....+
T Consensus       257 ~~~~~g~l~vs-~~~~~v~v~~~~~~~p  283 (286)
T 1q7f_A          257 ALMDDGSVVLA-SKDYRLYIYRYVQLAP  283 (286)
T ss_dssp             EEETTTEEEEE-ETTTEEEEEECSCCCC
T ss_pred             EECCCCcEEEE-CCCCeEEEEEcccccc
Confidence            55889987777 5689999999865443

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.80  E-value=2e-17  Score=156.65  Aligned_cols=257  Identities=11%  Similarity=-0.011  Sum_probs=170.3

Q ss_pred             CCCcccccCCCcccEEEecccc-CcEEEEEECCCCCEEE-EeeCCCcEEEEEecCCCeeeEEEEeccC------CCCEEE
Q 042434          201 EDHCCGRDQIPTETVQILTEHK-NEVWFVQFSNNGEYLA-SSSSDCSAIIWKVLEDSKLTLKHTLRSH------QNPVSF  272 (517)
Q Consensus       201 ~~~~~~~~~~~~~~~~~l~~h~-~~v~~~~~s~~~~~l~-t~~~dg~i~iw~~~~~~~~~~~~~~~~h------~~~v~~  272 (517)
                      ++....++....+....+..+. ..+..++|+|+|++++ ++..++.|.+||..++.   ....+..+      ...+.+
T Consensus        20 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~---~~~~~~~~~~~~~~~~~~~~   96 (349)
T 1jmx_B           20 PNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK---NTFHANLSSVPGEVGRSMYS   96 (349)
T ss_dssp             TTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE---EEEEEESCCSTTEEEECSSC
T ss_pred             CCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCc---EEEEEEcccccccccccccc
Confidence            3444455655666677766543 2577899999998665 55578999999997653   33333322      223788


Q ss_pred             EEECCCCCeEEEEeCC------------CeEEEEECCCCcE---EEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEE
Q 042434          273 VAWSPDDTKLLTCGNA------------EVLKLWDVETGIC---KHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM  337 (517)
Q Consensus       273 l~~s~~~~~l~s~~~d------------g~i~iwd~~~~~~---~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~  337 (517)
                      ++|+|||+++++++.+            +.|.+||+.+++.   +..+. +...+.+++|+|+++ +++++.+    ++.
T Consensus        97 ~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~~~----i~~  170 (349)
T 1jmx_B           97 FAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAGPD----IYK  170 (349)
T ss_dssp             EEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEESSS----EEE
T ss_pred             eEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEccCc----EEE
Confidence            9999999999998865            8999999988543   33332 334688999999999 6555433    889


Q ss_pred             EeCCCCee-EeeeCcCCC-----------------------ceEEEEEccCCCE-----------EEEEeCCCcEEEEEC
Q 042434          338 CDCDGNEI-KAWRGTRIP-----------------------KVLDLAVTPDGEN-----------LISVLSDKDIRILNL  382 (517)
Q Consensus       338 ~~~~~~~~-~~~~~~~~~-----------------------~i~~~~~~~~~~~-----------l~~~~~dg~i~i~d~  382 (517)
                      ||..+... ..+......                       ....+++++++..           +.....++.+.+++.
T Consensus       171 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (349)
T 1jmx_B          171 MDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEF  250 (349)
T ss_dssp             ECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEE
T ss_pred             EeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEeccc
Confidence            99875443 333222100                       2344666655421           112223344444443


Q ss_pred             CCceEEeeccCCCeeEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCC
Q 042434          383 GTYAERVISEEHPITSLSVSV-DCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENS  461 (517)
Q Consensus       383 ~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  461 (517)
                             ......+..++++| ++++++++  ++.|.+||+.+. .....+.....    +..+.++|+|++|++++.++
T Consensus       251 -------~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~-~~~~~~~~~~~----~~~~~~s~dg~~l~~~~~~~  316 (349)
T 1jmx_B          251 -------ADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQR-KLIKAANLDHT----YYCVAFDKKGDKLYLGGTFN  316 (349)
T ss_dssp             -------EECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTT-EEEEEEECSSC----CCEEEECSSSSCEEEESBSS
T ss_pred             -------ccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccC-eEEEEEcCCCC----ccceEECCCCCEEEEecCCC
Confidence                   12455788999999 99999888  889999999876 44344432221    23455689999888888899


Q ss_pred             cEEEEecCCCceeEEecCC
Q 042434          462 QIYIWNRRNSKPIEILSGH  480 (517)
Q Consensus       462 ~i~iwd~~~~~~~~~~~~h  480 (517)
                      .|++||..+++.+..+..+
T Consensus       317 ~v~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          317 DLAVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             EEEEEETTTTEEEEEEECS
T ss_pred             eEEEEeccccceeeeeecC
Confidence            9999999999988887654

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.79  E-value=3.3e-17  Score=155.09  Aligned_cols=256  Identities=13%  Similarity=0.133  Sum_probs=173.8

Q ss_pred             CcEEEEEECCCCCEEEEee---------CCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCC---C-
Q 042434          223 NEVWFVQFSNNGEYLASSS---------SDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNA---E-  289 (517)
Q Consensus       223 ~~v~~~~~s~~~~~l~t~~---------~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---g-  289 (517)
                      ..+..+++  ||++++...         .++.|.+|++.++...    .+    ..+..++|+|||++|+.++.+   + 
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~----~l----~~~~~~~~SpDg~~la~~~~~~~~~~   84 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR----FI----ENATMPRISPDGKKIAFMRANEEKKV   84 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE----EE----ESCEEEEECTTSSEEEEEEEETTTTE
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE----Ec----ccCCCeEECCCCCEEEEEEeccCCCc
Confidence            45666777  888887642         2567899998765421    22    468899999999999987654   3 


Q ss_pred             -eEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCC------------------C-------ceeEEEEeCCCC
Q 042434          290 -VLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSD------------------T-------EKGIFMCDCDGN  343 (517)
Q Consensus       290 -~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d------------------~-------~v~i~~~~~~~~  343 (517)
                       .|.+|++.+++.......+ . +..++|+|||+.|+.++.+                  |       ...++.|+..+.
T Consensus        85 ~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~  162 (347)
T 2gop_A           85 SEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESE  162 (347)
T ss_dssp             EEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTT
T ss_pred             ceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCC
Confidence             4888899888766554333 3 8999999999999888743                  1       345999999876


Q ss_pred             ee-EeeeCcCCCceEEEEEccCCCEEEEEeCCC---------cEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEe
Q 042434          344 EI-KAWRGTRIPKVLDLAVTPDGENLISVLSDK---------DIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNL  412 (517)
Q Consensus       344 ~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---------~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~  412 (517)
                      .. ..+.. .  .+..+.|+|+| .++++..++         .|.++|  ++. .....+ ..+..  ++|+|+.++.++
T Consensus       163 ~~~~~l~~-~--~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~-~~~~~--~spdg~~l~~~~  233 (347)
T 2gop_A          163 EVIEEFEK-P--RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK-VSFYA--VDSDGERILLYG  233 (347)
T ss_dssp             EEEEEEEE-E--TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE-ESEEE--EEECSSCEEEEE
T ss_pred             eEEeeecC-C--CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceEEeccC-cceee--ECCCCCEEEEEE
Confidence            65 55444 2  67889999999 777775542         455556  444 333333 34443  499999988877


Q ss_pred             CC--------CeEEEEEcCCCCccceEEeCcccCceEEEe-ecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCC
Q 042434          413 NS--------QEIHMWDVAGKWEKPFKYTGHSQNKYVIRS-CFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMT  483 (517)
Q Consensus       413 ~d--------~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~-~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~  483 (517)
                      .+        ..|.+||  ++ ........+..   .+.. ..|+ ++ ++++++.++.+++| +.+++....+ .+.+.
T Consensus       234 ~~~~~~~~~~~~l~~~d--~~-~~~~l~~~~~~---~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~-~~~~~  303 (347)
T 2gop_A          234 KPEKKYMSEHNKLYIYD--GK-EVMGILDEVDR---GVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIA-KGRHW  303 (347)
T ss_dssp             CCSSSCCCSSCEEEEEC--SS-CEEESSTTCCS---EEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEE-CSSSE
T ss_pred             ccccCCccccceEEEEC--CC-ceEeccccCCc---ccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEe-cCCCe
Confidence            54        3688888  32 22222222222   2332 5567 88 89999999999999 8766654444 45788


Q ss_pred             eeEEEecCCCCcEEEEeeCCCcE-EEeCCC
Q 042434          484 VNCVSWNPKRPKMLASASDDHTI-RIWGPC  512 (517)
Q Consensus       484 v~~v~~~~~~~~~l~s~~~dg~v-~iw~~~  512 (517)
                      |.+++|+| .  ++++++.++.. .+|.+.
T Consensus       304 v~~~~~s~-~--~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          304 IMGFDVDE-I--VVYLKETATRLRELFTWD  330 (347)
T ss_dssp             EEEEEESS-S--EEEEEECSSSCCEEEEES
T ss_pred             EEeeeeeC-c--EEEEEcCCCChHHheEeC
Confidence            99999999 4  67777766654 666554

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.79  E-value=1.4e-17  Score=160.40  Aligned_cols=252  Identities=13%  Similarity=0.058  Sum_probs=172.3

Q ss_pred             EEEEeccCCCCEEE-----EEECCCCCeEEEEeC-CC--eEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCC
Q 042434          259 LKHTLRSHQNPVSF-----VAWSPDDTKLLTCGN-AE--VLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSD  330 (517)
Q Consensus       259 ~~~~~~~h~~~v~~-----l~~s~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d  330 (517)
                      ....+..|......     .+|+|||++|+.++. +|  .|.+||+.+++.......+...+..+.|+|||+.|++++.+
T Consensus        22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~  101 (388)
T 3pe7_A           22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDG  101 (388)
T ss_dssp             EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETT
T ss_pred             ceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCC
Confidence            34566777766666     889999999998887 66  48889999998877766666666677899999999999988


Q ss_pred             CceeEEEEeCCCCeeEeeeCcCCCceEEE--EEccCCCEEEEEe----------------------CCCcEEEEECCCce
Q 042434          331 TEKGIFMCDCDGNEIKAWRGTRIPKVLDL--AVTPDGENLISVL----------------------SDKDIRILNLGTYA  386 (517)
Q Consensus       331 ~~v~i~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~l~~~~----------------------~dg~i~i~d~~~~~  386 (517)
                      +.  ++.|+..+.........+...+...  .++++++.++...                      .+..|.+||+.+++
T Consensus       102 ~~--l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~  179 (388)
T 3pe7_A          102 RN--LMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE  179 (388)
T ss_dssp             TE--EEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC
T ss_pred             Ce--EEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc
Confidence            77  9999998766554443333344333  4589999887432                      34679999999887


Q ss_pred             -EEeeccCCCeeEEEEcC-CCCEEEEEeCC------CeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEec
Q 042434          387 -ERVISEEHPITSLSVSV-DCKNFIVNLNS------QEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGS  458 (517)
Q Consensus       387 -~~~~~~~~~i~~~~~s~-~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  458 (517)
                       .....+...+..+.|+| +|+.++....+      ..|.++|..+.  ....+..+... ..+....|+|||+.|+..+
T Consensus       180 ~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~--~~~~l~~~~~~-~~~~~~~~spdg~~l~~~~  256 (388)
T 3pe7_A          180 STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT--NMRKVKTHAEG-ESCTHEFWVPDGSALVYVS  256 (388)
T ss_dssp             EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC--CCEESCCCCTT-EEEEEEEECTTSSCEEEEE
T ss_pred             eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC--ceEEeeeCCCC-cccccceECCCCCEEEEEe
Confidence             44445666789999999 99998877653      36888887654  22333332211 2244556799999776544


Q ss_pred             C-CC----cEEEEecCCCce--eEEecCCCC---CeeEEEecCCCCcEEEEe--------eCCCcEEEeCCCCCC
Q 042434          459 E-NS----QIYIWNRRNSKP--IEILSGHSM---TVNCVSWNPKRPKMLASA--------SDDHTIRIWGPCQSS  515 (517)
Q Consensus       459 ~-dg----~i~iwd~~~~~~--~~~~~~h~~---~v~~v~~~~~~~~~l~s~--------~~dg~v~iw~~~~~~  515 (517)
                      . ++    .|++||+.+++.  +..+.++..   ....++|+|+|..++++.        +.+..|++|++.+++
T Consensus       257 ~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~  331 (388)
T 3pe7_A          257 YLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT  331 (388)
T ss_dssp             EETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTE
T ss_pred             cCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCc
Confidence            3 22    399999999874  333333110   122347999995444433        456789999998764

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.78  E-value=6.6e-15  Score=135.95  Aligned_cols=283  Identities=11%  Similarity=-0.008  Sum_probs=194.7

Q ss_pred             eccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECC
Q 042434          218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVE  297 (517)
Q Consensus       218 l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~  297 (517)
                      +..+...+.+++++++|++.++...++.|.+|+.. + .... .....+...+.++++++++...++...++.|..||..
T Consensus        10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~-~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~   86 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-G-KITE-YPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK   86 (299)
T ss_dssp             CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-C-CEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-C-CeEE-ecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC
Confidence            44566789999999999987776667899999976 3 2221 1223355789999999999988887778899999986


Q ss_pred             CCcEE-EEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCc
Q 042434          298 TGICK-HTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKD  376 (517)
Q Consensus       298 ~~~~~-~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  376 (517)
                       ++.. .........+.++++.+++..+++...++.  ++.++..+.............+..+++.++|+..++...++.
T Consensus        87 -g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~--i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~  163 (299)
T 2z2n_A           87 -GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNR--IGRITDDGKIREYELPNKGSYPSFITLGSDNALWFTENQNNA  163 (299)
T ss_dssp             -SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTE--EEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTE
T ss_pred             -CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCce--EEEECCCCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCE
Confidence             4432 222234567899999999988777766666  888888544332222223346889999999988777777889


Q ss_pred             EEEEECCCceEEe---eccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcE
Q 042434          377 IRILNLGTYAERV---ISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTF  453 (517)
Q Consensus       377 i~i~d~~~~~~~~---~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  453 (517)
                      |..||. ++....   ......+..+++++++..+++...++.|..||. ++..  ..+.... ....+..+.++++|++
T Consensus       164 i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~--~~~~~~~-~~~~~~~i~~~~~g~l  238 (299)
T 2z2n_A          164 IGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI--TEFKIPT-PNARPHAITAGAGIDL  238 (299)
T ss_dssp             EEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE--EEEECSS-TTCCEEEEEECSTTCE
T ss_pred             EEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcE--EEEECCC-CCCCceeEEECCCCCE
Confidence            999998 554222   223456889999999987777667889999998 4322  2221111 1122445555889987


Q ss_pred             EEEecCCCcEEEEecCCCceeEE-ecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434          454 IASGSENSQIYIWNRRNSKPIEI-LSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS  515 (517)
Q Consensus       454 l~~~~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~  515 (517)
                      .++...++.|..||. +++.... +..+...+.++++ +++ .++++.+ .+.+..+++.+++
T Consensus       239 ~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g-~l~v~~~-~~~l~~~~~~~~~  297 (299)
T 2z2n_A          239 WFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGE-TIWFAME-CDKIGKLTLIKDN  297 (299)
T ss_dssp             EEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSS-CEEEEET-TTEEEEEEEC---
T ss_pred             EEeccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCC-CEEEEec-CCcEEEEEcCccc
Confidence            777667889999998 4543322 3345578999999 888 5665544 5667777776543

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.77  E-value=4.8e-17  Score=168.10  Aligned_cols=244  Identities=11%  Similarity=0.039  Sum_probs=175.5

Q ss_pred             EeccCCCCEEEEEECCCCCeEEEE--eCCCeEEEEECCCCcEEEEeCCCCCceE---------EEEEe--CCCCe-EEEe
Q 042434          262 TLRSHQNPVSFVAWSPDDTKLLTC--GNAEVLKLWDVETGICKHTFGDHGFIVS---------SCAWF--PDSKR-LVCG  327 (517)
Q Consensus       262 ~~~~h~~~v~~l~~s~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~---------~i~~~--~~~~~-l~~~  327 (517)
                      .+.+|...+..++|++++-++++.  +.++...||....+.....+..+...+.         ...|+  |||+. |+.+
T Consensus        18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~   97 (662)
T 3azo_A           18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT   97 (662)
T ss_dssp             HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred             HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence            356788999999999887666666  5588999999655555666766666655         56666  99998 7766


Q ss_pred             eCCCceeEEEEeCC--C-CeeEeeeCc----CCCceEEEEEccCCCEEEEEeCC----------CcEEEEECCC------
Q 042434          328 SSDTEKGIFMCDCD--G-NEIKAWRGT----RIPKVLDLAVTPDGENLISVLSD----------KDIRILNLGT------  384 (517)
Q Consensus       328 ~~d~~v~i~~~~~~--~-~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~------  384 (517)
                      +.. ...||.++..  + .....+...    +...+..++|+|||+.|++++.+          ..|++||+.+      
T Consensus        98 ~~~-~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  176 (662)
T 3azo_A           98 HFG-DQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADR  176 (662)
T ss_dssp             BTT-TCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCG
T ss_pred             ECC-CCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccC
Confidence            543 4459999987  4 444444442    33468899999999999988876          5899999988      


Q ss_pred             ce-EEee-ccCCCeeEEEEcCCCCEEEEEeCC--------CeEEEEEcCC-CC-ccceEEe-CcccCceEEEeecCCCCC
Q 042434          385 YA-ERVI-SEEHPITSLSVSVDCKNFIVNLNS--------QEIHMWDVAG-KW-EKPFKYT-GHSQNKYVIRSCFGGLDG  451 (517)
Q Consensus       385 ~~-~~~~-~~~~~i~~~~~s~~~~~l~~~~~d--------~~i~~~d~~~-~~-~~~~~~~-~~~~~~~~i~~~~~s~~~  451 (517)
                      +. .... .+...+..++|+|||++|+.++.+        ..|++||+.. +. .....+. ++...   +....|+|||
T Consensus       177 ~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~---~~~~~~spdg  253 (662)
T 3azo_A          177 SAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEA---IAQAEWAPDG  253 (662)
T ss_dssp             GGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBC---EEEEEECTTS
T ss_pred             CceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCce---EcceEECCCC
Confidence            55 4444 445677889999999999987754        3799999973 31 1222332 22232   4455679999


Q ss_pred             cEEEEecCCC--cEEEEecCCCceeEEecCCCCC--------eeEEEecCCCCcEEEEeeCCCcEEEeCC
Q 042434          452 TFIASGSENS--QIYIWNRRNSKPIEILSGHSMT--------VNCVSWNPKRPKMLASASDDHTIRIWGP  511 (517)
Q Consensus       452 ~~l~~~~~dg--~i~iwd~~~~~~~~~~~~h~~~--------v~~v~~~~~~~~~l~s~~~dg~v~iw~~  511 (517)
                      +++++++.+|  .|++||..+++.......+...        +.+++|+|++ .++++++. +.+++|.+
T Consensus       254 ~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~-~~~~~~~~-~~~~l~~~  321 (662)
T 3azo_A          254 SLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANG-LIAVVHGK-GAAVLGIL  321 (662)
T ss_dssp             CEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTS-CEEEEEBS-SSCEEEEE
T ss_pred             eEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCC-EEEEEEEc-CccEEEEE
Confidence            9888888888  6777787777765544433322        5688999998 78899988 99999943

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.77  E-value=4.3e-16  Score=162.00  Aligned_cols=247  Identities=11%  Similarity=0.029  Sum_probs=174.9

Q ss_pred             CCCCEEEEEECCCCCeEEEEeCCC-----eEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCc--------
Q 042434          266 HQNPVSFVAWSPDDTKLLTCGNAE-----VLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTE--------  332 (517)
Q Consensus       266 h~~~v~~l~~s~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~--------  332 (517)
                      |...+..++|||||++||.++.++     .|++||+.+++....... ...+..++|+|||+.|+.++.++.        
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~  201 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE  201 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc-CcccceEEEEeCCCEEEEEEECCccccccccc
Confidence            444688999999999998775543     899999999987653322 223667999999999999887653        


Q ss_pred             ------eeEEEEeCCCCe---eEeeeCc-CCCceEEEEEccCCCEEEEEeC-----CCcEEEEECCC------c--e-EE
Q 042434          333 ------KGIFMCDCDGNE---IKAWRGT-RIPKVLDLAVTPDGENLISVLS-----DKDIRILNLGT------Y--A-ER  388 (517)
Q Consensus       333 ------v~i~~~~~~~~~---~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~------~--~-~~  388 (517)
                            ..|+.|+..+..   ...+... +...+..+.|+|||++++.++.     +..|++||+.+      +  . ..
T Consensus       202 ~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~  281 (710)
T 2xdw_A          202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK  281 (710)
T ss_dssp             CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred             cccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEE
Confidence                  348899987644   2222222 2335788999999999887765     56899999976      4  2 33


Q ss_pred             eeccCCCeeEEEEcCCCCEEEEEeCC----CeEEEEEcCCCCc-cceEEeCcccCceEEEeecCCCCCcEEEEecCCC--
Q 042434          389 VISEEHPITSLSVSVDCKNFIVNLNS----QEIHMWDVAGKWE-KPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENS--  461 (517)
Q Consensus       389 ~~~~~~~i~~~~~s~~~~~l~~~~~d----~~i~~~d~~~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--  461 (517)
                      ...+...+.. .|+|+|+.++..+..    +.|.+||+.+... ....+..+... ..+..+.+++++.++++...|+  
T Consensus       282 l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~lv~~~~~~g~~  359 (710)
T 2xdw_A          282 LIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEK-DVLEWVACVRSNFLVLCYLHDVKN  359 (710)
T ss_dssp             EECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS-CEEEEEEEETTTEEEEEEEETTEE
T ss_pred             eeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCC-CeEEEEEEEcCCEEEEEEEECCEE
Confidence            3344444443 588999988877653    3699999876521 22444444332 2344444567788888888888  


Q ss_pred             cEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeC---CCcEEEeCCCCCC
Q 042434          462 QIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASD---DHTIRIWGPCQSS  515 (517)
Q Consensus       462 ~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~---dg~v~iw~~~~~~  515 (517)
                      .|++||+.+|+.+..+..+.+.+..++++|++..++++.+.   .+.|+.||+.+++
T Consensus       360 ~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          360 TLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            46777887888888888888889999999998555555443   5789999998765

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.76  E-value=3.7e-16  Score=146.53  Aligned_cols=244  Identities=11%  Similarity=0.075  Sum_probs=173.5

Q ss_pred             ccCcEEEEEECCCCCEEEEeeCC------------------------CcEEEEEecCCCeeeEEEEec-cCCCCEEEEEE
Q 042434          221 HKNEVWFVQFSNNGEYLASSSSD------------------------CSAIIWKVLEDSKLTLKHTLR-SHQNPVSFVAW  275 (517)
Q Consensus       221 h~~~v~~~~~s~~~~~l~t~~~d------------------------g~i~iw~~~~~~~~~~~~~~~-~h~~~v~~l~~  275 (517)
                      --+.|.+++++|+|+++++.+.+                        +.|.+||..++..   ...+. ++-.....+++
T Consensus        22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~---~~~~~~~~~~~p~gia~   98 (329)
T 3fvz_A           22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI---LQSSGKNLFYLPHGLSI   98 (329)
T ss_dssp             CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE---EEEECTTTCSSEEEEEE
T ss_pred             ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE---EeccCCCccCCceEEEE
Confidence            35779999999999999888777                        4799999865542   23332 44567899999


Q ss_pred             CCCCCeEEEEeCCCeEEEEECCCCc-EEEEeC---------CCCCceEEEEEeC-CCCeEEEee-CCCceeEEEEeCCCC
Q 042434          276 SPDDTKLLTCGNAEVLKLWDVETGI-CKHTFG---------DHGFIVSSCAWFP-DSKRLVCGS-SDTEKGIFMCDCDGN  343 (517)
Q Consensus       276 s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~---------~~~~~v~~i~~~~-~~~~l~~~~-~d~~v~i~~~~~~~~  343 (517)
                      +|+|+++++...++.|++||..... .+..+.         .+-..+..++++| ++..+++.+ .++.  |+.|+..+.
T Consensus        99 d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~--I~~~~~~g~  176 (329)
T 3fvz_A           99 DTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSR--IVQFSPSGK  176 (329)
T ss_dssp             CTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCE--EEEECTTSC
T ss_pred             CCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCe--EEEEcCCCC
Confidence            9999988888889999999985442 455552         3344689999999 777777775 5776  888898877


Q ss_pred             eeEeeeCc---------CCCceEEEEEccC-CCEEEEEeCCCcEEEEECCCce-EEee---ccCCCeeEEEEcC------
Q 042434          344 EIKAWRGT---------RIPKVLDLAVTPD-GENLISVLSDKDIRILNLGTYA-ERVI---SEEHPITSLSVSV------  403 (517)
Q Consensus       344 ~~~~~~~~---------~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~-~~~~---~~~~~i~~~~~s~------  403 (517)
                      .+..+...         .......++++|+ +..+++...++.|++||..+++ ....   .....+..++++|      
T Consensus       177 ~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~  256 (329)
T 3fvz_A          177 FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAV  256 (329)
T ss_dssp             EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEE
T ss_pred             EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEe
Confidence            76655422         1224789999998 6677777788899999998655 2222   3445688899999      


Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCC
Q 042434          404 DCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRN  470 (517)
Q Consensus       404 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~  470 (517)
                      +++.+++...+..|.+||..++ .....+............++++|+|.++++...++.|++|++..
T Consensus       257 ~g~~~v~~~~~~~v~~~~~~~g-~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          257 NGKPYFGDQEPVQGFVMNFSSG-EIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             ECCCCTTCSCCCCEEEEETTTC-CEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             CCCEEeccCCCcEEEEEEcCCC-eEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence            3333333334558999998776 44444421111111234455689998889989999999999753

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.75  E-value=9.8e-15  Score=145.46  Aligned_cols=303  Identities=11%  Similarity=0.074  Sum_probs=205.9

Q ss_pred             cccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEec--CCCeeeEEEEeccCCCCEEEEEEC----C
Q 042434          204 CCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVL--EDSKLTLKHTLRSHQNPVSFVAWS----P  277 (517)
Q Consensus       204 ~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~--~~~~~~~~~~~~~h~~~v~~l~~s----~  277 (517)
                      ...++....+.+..+.. ...+..+.|||||+++++++.|+.|.+||+.  +.   +...++... .....++|+    |
T Consensus       179 V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~---~~v~~i~~G-~~P~~ia~s~~~~p  253 (567)
T 1qks_A          179 IALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP---TTVAEIKIG-SEARSIETSKMEGW  253 (567)
T ss_dssp             EEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSC---CEEEEEECC-SEEEEEEECCSTTC
T ss_pred             EEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCC---cEeEEEecC-CCCceeEEccccCC
Confidence            44456566667777653 3467799999999999999999999999985  33   334455443 346799999    6


Q ss_pred             CCCeEEEEeC-CCeEEEEECCCCcEEEEeCCC-----------CCceEEEEEeCCCCeEEEe-eCCCceeEEEEeCCCCe
Q 042434          278 DDTKLLTCGN-AEVLKLWDVETGICKHTFGDH-----------GFIVSSCAWFPDSKRLVCG-SSDTEKGIFMCDCDGNE  344 (517)
Q Consensus       278 ~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~-----------~~~v~~i~~~~~~~~l~~~-~~d~~v~i~~~~~~~~~  344 (517)
                      ||+++++++. ++++.++|..+.+.+..+...           ...+..+..++++..++.. ..+|.  |+++|.....
T Consensus       254 DGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~--v~~vd~~~~~  331 (567)
T 1qks_A          254 EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK--ILLVDYTDLN  331 (567)
T ss_dssp             TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE--EEEEETTCSS
T ss_pred             CCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCe--EEEEecCCCc
Confidence            9999887765 589999999999988876421           2267888889887655544 44566  8888876532


Q ss_pred             -eEeeeCcCCCceEEEEEccCCCEEEEEe-CCCcEEEEECCCceE-Eeecc----CCCeeEEE-EcCCCCEEEEEe--CC
Q 042434          345 -IKAWRGTRIPKVLDLAVTPDGENLISVL-SDKDIRILNLGTYAE-RVISE----EHPITSLS-VSVDCKNFIVNL--NS  414 (517)
Q Consensus       345 -~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~-~~~~~----~~~i~~~~-~s~~~~~l~~~~--~d  414 (517)
                       +............++.|+|+|++++++. .++.|.++|+.+++. .....    .++-.... ++|++..+.+.+  .+
T Consensus       332 ~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~  411 (567)
T 1qks_A          332 NLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGD  411 (567)
T ss_dssp             EEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSS
T ss_pred             cceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCC
Confidence             2211112223577899999999887665 578999999999872 22221    11112233 578755555443  46


Q ss_pred             CeEEEEEcCCC------CccceEEeCcccCceEEEeecCCCCCcEEEEecC-------CCcEEEEecCCC-----c-eeE
Q 042434          415 QEIHMWDVAGK------WEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSE-------NSQIYIWNRRNS-----K-PIE  475 (517)
Q Consensus       415 ~~i~~~d~~~~------~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-------dg~i~iwd~~~~-----~-~~~  475 (517)
                      +.|.++|....      ++.+..+.........+.   .+|+++++++...       .++|.++|+.+.     . ...
T Consensus       412 ~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~---~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~  488 (567)
T 1qks_A          412 DSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIK---THPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFK  488 (567)
T ss_dssp             SEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEE---CCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEE
T ss_pred             CeEEEecCCCCCCccccCEEEEEEecCCCCCEEEE---eCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcE
Confidence            89999998762      345555554433322232   3899999998663       359999999876     2 113


Q ss_pred             Eec--------CCCCCeeEEEecCCCCcEEEEee----CCCcEEEeCCCCCCC
Q 042434          476 ILS--------GHSMTVNCVSWNPKRPKMLASAS----DDHTIRIWGPCQSSE  516 (517)
Q Consensus       476 ~~~--------~h~~~v~~v~~~~~~~~~l~s~~----~dg~v~iw~~~~~~~  516 (517)
                      .+.        .....+..+.|+|+|..+++|..    .++.|.|+|.++.+.
T Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~  541 (567)
T 1qks_A          489 TLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLEL  541 (567)
T ss_dssp             EECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred             EeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceE
Confidence            332        12357899999999976666643    379999999988753

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.74  E-value=1.1e-15  Score=138.94  Aligned_cols=240  Identities=9%  Similarity=-0.003  Sum_probs=170.7

Q ss_pred             CEEEEEECCCCCeEE-EEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEe
Q 042434          269 PVSFVAWSPDDTKLL-TCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKA  347 (517)
Q Consensus       269 ~v~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~  347 (517)
                      ...+++++++|++++ +.+.++.|.+||..++........+...+.++++.++++.+++.. ++.  |+.|+..+.....
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~--i~~~d~~~~~~~~  101 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNR--VVTLAAGSNNQTV  101 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTE--EEEECTTCSCCEE
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCE--EEEEeCCCceEee
Confidence            678999999998777 547788999999766543322223335678899999998666555 666  8899988876655


Q ss_pred             eeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceEEee--ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 042434          348 WRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVI--SEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK  425 (517)
Q Consensus       348 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~  425 (517)
                      +.......+..++++++|+.+++...++.|.+|+..+......  .....+..++++++|+.+++...++.|.+||..+.
T Consensus       102 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~  181 (270)
T 1rwi_B          102 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN  181 (270)
T ss_dssp             CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred             eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCC
Confidence            5434335789999999999777777788999998766542222  22346789999999997777777889999998765


Q ss_pred             CccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCc
Q 042434          426 WEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHT  505 (517)
Q Consensus       426 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~  505 (517)
                      ...... ....   .....+.++++|.++++...++.|.+||............+...+.+++++|+| .++++...++.
T Consensus       182 ~~~~~~-~~~~---~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~  256 (270)
T 1rwi_B          182 NQVVLP-FTDI---TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDR-TVYVADRGNDR  256 (270)
T ss_dssp             CEEECC-CSSC---CSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTC-CEEEEEGGGTE
T ss_pred             ceEeec-ccCC---CCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCC-CEEEEECCCCE
Confidence            222111 1111   123445558899888887788999999987654433222334678999999999 68899999999


Q ss_pred             EEEeCCCCCCC
Q 042434          506 IRIWGPCQSSE  516 (517)
Q Consensus       506 v~iw~~~~~~~  516 (517)
                      |+++++...+.
T Consensus       257 v~~~~~~~~~~  267 (270)
T 1rwi_B          257 VVKLTSLEHHH  267 (270)
T ss_dssp             EEEECCCGGGS
T ss_pred             EEEEcCCCccc
Confidence            99999987654

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.74  E-value=1.3e-16  Score=153.92  Aligned_cols=253  Identities=14%  Similarity=0.045  Sum_probs=165.5

Q ss_pred             cEEEeccccCcEE-EEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEE-------------------E
Q 042434          214 TVQILTEHKNEVW-FVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSF-------------------V  273 (517)
Q Consensus       214 ~~~~l~~h~~~v~-~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~-------------------l  273 (517)
                      ....+..+...+. .+.|||||++|+.++.++.|++|++.++...   .....+......                   +
T Consensus        71 ~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~---~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~  147 (396)
T 3c5m_A           71 QAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQ---VIYTVDEEWKGYGTWVANSDCTKLVGIEILKR  147 (396)
T ss_dssp             EEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEE---EEEECCTTEEEEEEEEECTTSSEEEEEEEEGG
T ss_pred             cEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcE---EEEecccccCCCCCEEEeccCCcccccccccc
Confidence            3444444444433 4789999999999999999999998765422   222223332222                   3


Q ss_pred             EECCCCCeEEEE-----eCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeC-CCCeEEEeeCCCc----eeEEEEeCCCC
Q 042434          274 AWSPDDTKLLTC-----GNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFP-DSKRLVCGSSDTE----KGIFMCDCDGN  343 (517)
Q Consensus       274 ~~s~~~~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~d~~----v~i~~~~~~~~  343 (517)
                      .|+|+++.++.+     ..+..|.+||+.+++..... .+...+..+.|+| +++.|+..+.++.    ..|+.++..+.
T Consensus       148 ~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~  226 (396)
T 3c5m_A          148 DWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGS  226 (396)
T ss_dssp             GCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSC
T ss_pred             ccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCC
Confidence            568888877654     35668999999998866554 5667789999999 7887777665443    45999998876


Q ss_pred             eeEeeeCcC-CCceEEEEEccCCCEEEEEeCC-----CcEEEEECCCceEEeeccCCCeeEEEEcC-CCCEEEEEe----
Q 042434          344 EIKAWRGTR-IPKVLDLAVTPDGENLISVLSD-----KDIRILNLGTYAERVISEEHPITSLSVSV-DCKNFIVNL----  412 (517)
Q Consensus       344 ~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~----  412 (517)
                      ....+.... ...+..+.|+|+|+.|+.++.+     +.|++||+.++............ +.|+| +|+.+++++    
T Consensus       227 ~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~-~~~s~~dg~~l~~~~~~~p  305 (396)
T 3c5m_A          227 NVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPPCS-HLMSNFDGSLMVGDGCDAP  305 (396)
T ss_dssp             CCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCSEE-EEEECSSSSEEEEEECCC-
T ss_pred             ceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCCCC-CCccCCCCceEEEecCCcc
Confidence            655544432 2357889999999987776544     44999999887633322222233 89999 999888754    


Q ss_pred             ------------CCCeEEEEEcCCCCccceEEeCcccCce--------EEEeecCCCCCcEEEEecC-CCc--EEEEecC
Q 042434          413 ------------NSQEIHMWDVAGKWEKPFKYTGHSQNKY--------VIRSCFGGLDGTFIASGSE-NSQ--IYIWNRR  469 (517)
Q Consensus       413 ------------~d~~i~~~d~~~~~~~~~~~~~~~~~~~--------~i~~~~~s~~~~~l~~~~~-dg~--i~iwd~~  469 (517)
                                  .+..|++||+.++. . ..+..+.....        ......|+|||+.|+.++. ++.  |+.+++.
T Consensus       306 ~~~~~~~~~~~~~~~~i~~~d~~~~~-~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~  383 (396)
T 3c5m_A          306 VDVADADSYNIENDPFLYVLNTKAKS-A-QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVP  383 (396)
T ss_dssp             ---------CCCCCCEEEEEETTTTB-C-CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECC
T ss_pred             eeeccccccccCCCCcEEEEecccCc-e-EEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEc
Confidence                        34689999997652 2 23333322100        0123345899998877664 444  5555655


Q ss_pred             CCce
Q 042434          470 NSKP  473 (517)
Q Consensus       470 ~~~~  473 (517)
                      ++..
T Consensus       384 ~~~~  387 (396)
T 3c5m_A          384 ESYK  387 (396)
T ss_dssp             TTCC
T ss_pred             cccc
Confidence            5543

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.73  E-value=2.2e-15  Score=139.13  Aligned_cols=238  Identities=9%  Similarity=0.055  Sum_probs=168.3

Q ss_pred             eccCCCCEEEEEECCCCC-eEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCC
Q 042434          263 LRSHQNPVSFVAWSPDDT-KLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD  341 (517)
Q Consensus       263 ~~~h~~~v~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~  341 (517)
                      +..+.....+++|+|+++ +++++..++.|..||..++  ...+..+...+.+++++|+|+++++...++.  |+.|+..
T Consensus        23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~--i~~~d~~   98 (296)
T 3e5z_A           23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRR--LERQREP   98 (296)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTE--EEEECST
T ss_pred             EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCe--EEEEcCC
Confidence            344566788999999998 7778888999999999887  5666667788999999999998777766666  8999985


Q ss_pred             CCeeEeeeCc----CCCceEEEEEccCCCEEEE----Ee-------------CCCcEEEEECCCceEEeeccCCCeeEEE
Q 042434          342 GNEIKAWRGT----RIPKVLDLAVTPDGENLIS----VL-------------SDKDIRILNLGTYAERVISEEHPITSLS  400 (517)
Q Consensus       342 ~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~----~~-------------~dg~i~i~d~~~~~~~~~~~~~~i~~~~  400 (517)
                      +.....+...    ....+..++++|+|+.+++    ++             ..+.|..++.................++
T Consensus        99 ~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~gi~  178 (296)
T 3e5z_A           99 GGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAPIRDRVKPNGLA  178 (296)
T ss_dssp             TCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEEECCCSSEEEEE
T ss_pred             CCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCCEEEeecCCCCCccEE
Confidence            4444333221    1224678999999998887    32             1346777776622244445556678999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEEcCCCCcc---ceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEe
Q 042434          401 VSVDCKNFIVNLNSQEIHMWDVAGKWEK---PFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEIL  477 (517)
Q Consensus       401 ~s~~~~~l~~~~~d~~i~~~d~~~~~~~---~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  477 (517)
                      |+|+++.+++.+.++.|.+||+......   ...+....   .....++++++|++.++.  ++.|.+||.. ++.+..+
T Consensus       179 ~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~---~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~  252 (296)
T 3e5z_A          179 FLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEP---GKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRV  252 (296)
T ss_dssp             ECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSS---SCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEE
T ss_pred             ECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCC---CCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEE
Confidence            9999999977777899999998622122   12221111   112345558899876666  7889999986 8888888


Q ss_pred             cCCCCCeeEEEe-cCCCCcEEEEeeCCCcEEEeCCCC
Q 042434          478 SGHSMTVNCVSW-NPKRPKMLASASDDHTIRIWGPCQ  513 (517)
Q Consensus       478 ~~h~~~v~~v~~-~~~~~~~l~s~~~dg~v~iw~~~~  513 (517)
                      ..+.. +++++| .|++ ..|+.++.++ +.-+++.+
T Consensus       253 ~~~~~-~~~~~f~~~d~-~~L~v~t~~~-l~~~~~~~  286 (296)
T 3e5z_A          253 LTPQT-TSNLCFGGPEG-RTLYMTVSTE-FWSIETNV  286 (296)
T ss_dssp             ECSSC-CCEEEEESTTS-CEEEEEETTE-EEEEECSC
T ss_pred             ECCCC-ceeEEEECCCC-CEEEEEcCCe-EEEEEccc
Confidence            87777 999999 5887 5677777765 44445444

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.73  E-value=3.3e-16  Score=162.37  Aligned_cols=280  Identities=13%  Similarity=0.026  Sum_probs=178.9

Q ss_pred             CCCCEEEEeeCCC---cEEEEEecC-CCeeeEEEEe----ccCCCCEEEEEECCCCCeEEE-----EeCCCeEEEEECCC
Q 042434          232 NNGEYLASSSSDC---SAIIWKVLE-DSKLTLKHTL----RSHQNPVSFVAWSPDDTKLLT-----CGNAEVLKLWDVET  298 (517)
Q Consensus       232 ~~~~~l~t~~~dg---~i~iw~~~~-~~~~~~~~~~----~~h~~~v~~l~~s~~~~~l~s-----~~~dg~i~iwd~~~  298 (517)
                      |+|++++....++   .-.+|.... +.....+...    .+|...+..++|||||++||.     |+.+..|++||+.+
T Consensus        77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t  156 (695)
T 2bkl_A           77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS  156 (695)
T ss_dssp             EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT
T ss_pred             EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC
Confidence            5777777665443   345565432 2222222111    235557999999999999983     34456899999999


Q ss_pred             CcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCc-----------eeEEEEeCCCCe---eEeeeC-cCCCceEEEEEcc
Q 042434          299 GICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTE-----------KGIFMCDCDGNE---IKAWRG-TRIPKVLDLAVTP  363 (517)
Q Consensus       299 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~-----------v~i~~~~~~~~~---~~~~~~-~~~~~i~~~~~~~  363 (517)
                      ++.+..-.........++|+|||+.|+.++.+..           -.|+.|+..+..   ...+.. .+...+..+.|+|
T Consensus       157 g~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp  236 (695)
T 2bkl_A          157 GEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR  236 (695)
T ss_dssp             CCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT
T ss_pred             CCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC
Confidence            9864110111111267899999999999887653           348899987544   122222 2224688999999


Q ss_pred             CCCEEEEEeCCC----cEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeC----CCeEEEEEcCCCCc-cceEEe
Q 042434          364 DGENLISVLSDK----DIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLN----SQEIHMWDVAGKWE-KPFKYT  433 (517)
Q Consensus       364 ~~~~l~~~~~dg----~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~----d~~i~~~d~~~~~~-~~~~~~  433 (517)
                      ||++++.++.++    .|+++|..++. .....+...+....+ ++|+ ++..+.    ++.|.+||+.+... ....+.
T Consensus       237 DG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~  314 (695)
T 2bkl_A          237 DGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIV  314 (695)
T ss_dssp             TSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEE
T ss_pred             CCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEe
Confidence            999988877666    67777765544 344444445555555 6666 555443    57899999876521 123333


Q ss_pred             CcccCceEEEeecCCCCCcEEEEecCCCcEEEEecC-CCceeEEecCC-CCCeeEEEecCCCCcEEEEee---CCCcEEE
Q 042434          434 GHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRR-NSKPIEILSGH-SMTVNCVSWNPKRPKMLASAS---DDHTIRI  508 (517)
Q Consensus       434 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~h-~~~v~~v~~~~~~~~~l~s~~---~dg~v~i  508 (517)
                      .+... ..+..+.++ ++.++++...|+..++|.+. +++....+..+ .+.+..++++|++..++++.+   ..++|++
T Consensus       315 ~~~~~-~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~  392 (695)
T 2bkl_A          315 PEDSS-ASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYK  392 (695)
T ss_dssp             CCCSS-CEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEE
T ss_pred             cCCCC-CeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEE
Confidence            33222 223333334 67888999999988887654 46666667655 677888999999854444444   3578999


Q ss_pred             eCCCCCC
Q 042434          509 WGPCQSS  515 (517)
Q Consensus       509 w~~~~~~  515 (517)
                      ||+.+++
T Consensus       393 ~d~~~g~  399 (695)
T 2bkl_A          393 TSVSTGK  399 (695)
T ss_dssp             EETTTCC
T ss_pred             EECCCCc
Confidence            9998765

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.73  E-value=2e-15  Score=156.94  Aligned_cols=243  Identities=14%  Similarity=0.109  Sum_probs=166.1

Q ss_pred             cccCcEEEEEECCCCCEEEEeeCCC-----cEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCe----
Q 042434          220 EHKNEVWFVQFSNNGEYLASSSSDC-----SAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEV----  290 (517)
Q Consensus       220 ~h~~~v~~~~~s~~~~~l~t~~~dg-----~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~----  290 (517)
                      +|...+..++|||||++||.++.++     .|++||+.++.....  ++..  ..+..++|+|||+.|+.++.++.    
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~--~~~~--~~~~~~~wspDg~~l~~~~~~~~~~~~  197 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VLER--VKFSCMAWTHDGKGMFYNAYPQQDGKS  197 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EEEE--ECSCCEEECTTSSEEEEEECCCCSSCC
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc--cccC--cccceEEEEeCCCEEEEEEECCccccc
Confidence            3555789999999999999876543     899999987643321  2221  22667999999999999888766    


Q ss_pred             ------------EEEEECCCCcE--EEEeC--CCCCceEEEEEeCCCCeEEEeeCCC---ceeEEEEeCCC------C--
Q 042434          291 ------------LKLWDVETGIC--KHTFG--DHGFIVSSCAWFPDSKRLVCGSSDT---EKGIFMCDCDG------N--  343 (517)
Q Consensus       291 ------------i~iwd~~~~~~--~~~~~--~~~~~v~~i~~~~~~~~l~~~~~d~---~v~i~~~~~~~------~--  343 (517)
                                  |++|++.++..  ...+.  .+...+..+.|+|||++|+.++.++   ...+++++..+      .  
T Consensus       198 ~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~  277 (710)
T 2xdw_A          198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL  277 (710)
T ss_dssp             SSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC
T ss_pred             cccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc
Confidence                        99999988762  22233  3456688999999999998876532   33499999864      3  


Q ss_pred             eeEeeeCcCCCceEEEEEccCCCEEEEEeCC----CcEEEEECCCce----EEeeccCC--CeeEEEEcCCCCEEEEEeC
Q 042434          344 EIKAWRGTRIPKVLDLAVTPDGENLISVLSD----KDIRILNLGTYA----ERVISEEH--PITSLSVSVDCKNFIVNLN  413 (517)
Q Consensus       344 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~----~~~~~~~~--~i~~~~~s~~~~~l~~~~~  413 (517)
                      ....+..+.. .+.. .|+++|+.++..+..    +.|.+||+.+..    .....+..  .+..++|++++..+++...
T Consensus       278 ~~~~l~~~~~-~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~  355 (710)
T 2xdw_A          278 KWVKLIDNFE-GEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLH  355 (710)
T ss_dssp             CCEEEECSSS-SCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEE
T ss_pred             ceEEeeCCCC-cEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEE
Confidence            3444444432 3333 588999988776653    369999998763    33444433  5778899877777778887


Q ss_pred             CCe--EEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEe----cCCCcEEEEecCCCc
Q 042434          414 SQE--IHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASG----SENSQIYIWNRRNSK  472 (517)
Q Consensus       414 d~~--i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~----~~dg~i~iwd~~~~~  472 (517)
                      ++.  |.+||+.++ .....+..+..   .+..+.++|++..++..    ...++|+.||+.+++
T Consensus       356 ~g~~~l~~~~~~~g-~~~~~l~~~~~---~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          356 DVKNTLQLHDLATG-ALLKIFPLEVG---SVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             TTEEEEEEEETTTC-CEEEEECCCSS---EEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             CCEEEEEEEECCCC-CEEEecCCCCc---eEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            874  566776444 33344444422   24445567888766533    234789999998877

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.72  E-value=4.7e-16  Score=161.20  Aligned_cols=243  Identities=11%  Similarity=-0.012  Sum_probs=164.9

Q ss_pred             cccCcEEEEEECCCCCEEEE-----eeCCCcEEEEEecCCCeeeEEEEeccCCCCE--EEEEECCCCCeEEEEeCCCe--
Q 042434          220 EHKNEVWFVQFSNNGEYLAS-----SSSDCSAIIWKVLEDSKLTLKHTLRSHQNPV--SFVAWSPDDTKLLTCGNAEV--  290 (517)
Q Consensus       220 ~h~~~v~~~~~s~~~~~l~t-----~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v--~~l~~s~~~~~l~s~~~dg~--  290 (517)
                      +|...+..++|||||++||.     |+.+..|++||+.++....     ..+...+  ..++|+|||+.|+.++.|..  
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~-----~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~  192 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK-----VDVIEGGKYATPKWTPDSKGFYYEWLPTDPS  192 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS-----SCCBSCCTTCCCEECTTSSEEEEEECCCCTT
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC-----CcccCcccccceEEecCCCEEEEEEecCCCC
Confidence            46668999999999999994     4445789999998764320     1111222  67899999999999988776  


Q ss_pred             -----------EEEEECCCCc----EEEEeCCCCCceEEEEEeCCCCeEEEeeCCC--ceeEEEEeCCCCeeEeeeCcCC
Q 042434          291 -----------LKLWDVETGI----CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDT--EKGIFMCDCDGNEIKAWRGTRI  353 (517)
Q Consensus       291 -----------i~iwd~~~~~----~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~--~v~i~~~~~~~~~~~~~~~~~~  353 (517)
                                 |++|++.++.    .+.....+...+.++.|+|||++|+.++.++  ...+|+++..+.....+.....
T Consensus       193 ~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~  272 (695)
T 2bkl_A          193 IKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVG  272 (695)
T ss_dssp             SCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSS
T ss_pred             CccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCC
Confidence                       9999998876    3333334556789999999999998877665  4558888876555555554443


Q ss_pred             CceEEEEEccCCCEEEEEeC----CCcEEEEECCCce----EEeecc--CCCeeEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 042434          354 PKVLDLAVTPDGENLISVLS----DKDIRILNLGTYA----ERVISE--EHPITSLSVSVDCKNFIVNLNSQEIHMWDVA  423 (517)
Q Consensus       354 ~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~----~~~~~~--~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~  423 (517)
                       .+....+ ++|. ++..+.    ++.|.+||+.++.    .....+  ...+..++++ ++..+++...++..++|.+.
T Consensus       273 -~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~  348 (695)
T 2bkl_A          273 -AKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVAT  348 (695)
T ss_dssp             -CCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred             -ceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence             3444555 5666 554443    5789999997754    333333  3457778888 66777788888887777654


Q ss_pred             CCCccceEEeCcccCceEEEeecCCCCCcEEE----EecCCCcEEEEecCCCce
Q 042434          424 GKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIA----SGSENSQIYIWNRRNSKP  473 (517)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~----~~~~dg~i~iwd~~~~~~  473 (517)
                      ........+..+.  ...+..+.++|++..++    +....++|++||+.+++.
T Consensus       349 ~~g~~~~~l~~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          349 LKGKPVRTVQLPG--VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             TTCCEEEECCCSS--SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             CCCCeeEEecCCC--CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            2112233333221  22345566688887776    333457899999988763

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.71  E-value=1.7e-14  Score=130.97  Aligned_cols=247  Identities=9%  Similarity=0.062  Sum_probs=179.3

Q ss_pred             CCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCC-CCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCC-CC
Q 042434          233 NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQ-NPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDH-GF  310 (517)
Q Consensus       233 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~-~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~  310 (517)
                      .+++|++++.|+.|.+||..++   +.+..+..+. ..+.++.++|+|++++  +.++.|..||. +|+.+..+..+ ..
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG---~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~   77 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTK---EIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGC   77 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTT---EEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTC
T ss_pred             CCcEEEeeCCCCEEEEEECCCC---eEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCc
Confidence            4578999999999999998766   4446666555 4789999999999888  45778999999 89999988765 35


Q ss_pred             ceEEEEEeCCCCeEEEeeC-CCceeEEEEeCCCCeeEeeeCcC-----CCceEEEEEccCCCEEEEEeCCCcEEEEECCC
Q 042434          311 IVSSCAWFPDSKRLVCGSS-DTEKGIFMCDCDGNEIKAWRGTR-----IPKVLDLAVTPDGENLISVLSDKDIRILNLGT  384 (517)
Q Consensus       311 ~v~~i~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  384 (517)
                      .+.++.+.++|+.+++.+. ++.  ++.++..++.+..+....     ......+.+.++|+++++...++.|..||...
T Consensus        78 ~~~~~~~~~dG~~lv~~~~~~~~--v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G  155 (276)
T 3no2_A           78 EMQTARILPDGNALVAWCGHPST--ILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNG  155 (276)
T ss_dssp             EEEEEEECTTSCEEEEEESTTEE--EEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTTS
T ss_pred             cccccEECCCCCEEEEecCCCCE--EEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCCC
Confidence            7889999999999999877 555  888898887776654211     12345567899999999999999999999983


Q ss_pred             ceEEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCccc---CceEEEeecCCCCCcEEEEecCC-
Q 042434          385 YAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQ---NKYVIRSCFGGLDGTFIASGSEN-  460 (517)
Q Consensus       385 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~d-  460 (517)
                      ...........+.++...++++.++++..++.|..+|..++ +.+..+.....   ....+......++|+++++.... 
T Consensus       156 ~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG-~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~  234 (276)
T 3no2_A          156 QLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESN-RIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGH  234 (276)
T ss_dssp             CEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTC-CEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTT
T ss_pred             CEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCC-cEEEEecCCCCCCccccccccceEcCCCCEEEEeccCc
Confidence            33444544556777888999999999998889999998866 56666653321   11223444446788888776311 


Q ss_pred             -------CcEEEEec-CCCceeEEecCCC--CCeeEEE
Q 042434          461 -------SQIYIWNR-RNSKPIEILSGHS--MTVNCVS  488 (517)
Q Consensus       461 -------g~i~iwd~-~~~~~~~~~~~h~--~~v~~v~  488 (517)
                             +..+++.+ .+|+.+.++..+.  +.+.+++
T Consensus       235 ~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~  272 (276)
T 3no2_A          235 DREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC  272 (276)
T ss_dssp             CTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred             cccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence                   12345554 4677777776442  4455443

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.70  E-value=2.5e-15  Score=142.13  Aligned_cols=222  Identities=11%  Similarity=0.060  Sum_probs=157.5

Q ss_pred             CCEEEEEECCCCCeEEEEe---------CCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCC---CceeE
Q 042434          268 NPVSFVAWSPDDTKLLTCG---------NAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSD---TEKGI  335 (517)
Q Consensus       268 ~~v~~l~~s~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d---~~v~i  335 (517)
                      ..+...++  ||+.++...         .++.|.+||+.+++... +    ..+..++|+|||+.|+.++.+   +...+
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l   87 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEI   87 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence            44667777  888887642         25689999999887543 3    567889999999999987764   45669


Q ss_pred             EEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCC---------------------------CcEEEEECCCceE-
Q 042434          336 FMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSD---------------------------KDIRILNLGTYAE-  387 (517)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------------------------g~i~i~d~~~~~~-  387 (517)
                      |.++..+...........  +..+.|+|||+.|+.++.+                           ..|++||+.++.. 
T Consensus        88 ~~~~~~~g~~~~l~~~~~--~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~  165 (347)
T 2gop_A           88 WVADLETLSSKKILEAKN--IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI  165 (347)
T ss_dssp             EEEETTTTEEEEEEEESE--EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE
T ss_pred             EEEECCCCceEEEEcCCC--ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE
Confidence            999998776655554442  8899999999988887642                           5799999988764 


Q ss_pred             EeeccCCCeeEEEEcCCCCEEEEEeCCC-------eEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCC
Q 042434          388 RVISEEHPITSLSVSVDCKNFIVNLNSQ-------EIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSEN  460 (517)
Q Consensus       388 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~-------~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  460 (517)
                      ...... .+..+.|+|+| .++++..++       ...+|.+.++  ....+..+ ..   +...  +|||++|+.++.+
T Consensus       166 ~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~--~~~~l~~~-~~---~~~~--spdg~~l~~~~~~  235 (347)
T 2gop_A          166 EEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDG--KEEKMFEK-VS---FYAV--DSDGERILLYGKP  235 (347)
T ss_dssp             EEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETT--EEEEEEEE-ES---EEEE--EECSSCEEEEECC
T ss_pred             eeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeCCC--ceEEeccC-cc---eeeE--CCCCCEEEEEEcc
Confidence            333323 78899999999 776665442       3344444332  22333333 22   2222  7999988877644


Q ss_pred             --------CcEEEEecCCCceeEEecCCCCCeeE-EEecCCCCcEEEEeeCCCcEEEeCCCCC
Q 042434          461 --------SQIYIWNRRNSKPIEILSGHSMTVNC-VSWNPKRPKMLASASDDHTIRIWGPCQS  514 (517)
Q Consensus       461 --------g~i~iwd~~~~~~~~~~~~h~~~v~~-v~~~~~~~~~l~s~~~dg~v~iw~~~~~  514 (517)
                              ..|++||  +++......+|...+.. +.|+ ++  ++++++.++.+++| +.++
T Consensus       236 ~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg--~~~~~~~~~~~~l~-~~~g  292 (347)
T 2gop_A          236 EKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK--VYFTLFEEGSVNLY-IWDG  292 (347)
T ss_dssp             SSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE--EEEEEEETTEEEEE-EESS
T ss_pred             ccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc--EEEEEecCCcEEEE-EcCC
Confidence                    4688888  66665555667788886 9999 76  88899999999999 8643

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.70  E-value=3.8e-14  Score=133.14  Aligned_cols=245  Identities=7%  Similarity=-0.002  Sum_probs=169.3

Q ss_pred             CcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCC--
Q 042434          211 PTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNA--  288 (517)
Q Consensus       211 ~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d--  288 (517)
                      .......+.++...+.+++|+|+|++++++..++.|.+||..++..   ......+...+.+++|+|+|++++++..+  
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~---~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~  109 (333)
T 2dg1_A           33 TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI---KRPFVSHKANPAAIKIHKDGRLFVCYLGDFK  109 (333)
T ss_dssp             ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE---EEEEECSSSSEEEEEECTTSCEEEEECTTSS
T ss_pred             ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcE---EEEeeCCCCCcceEEECCCCcEEEEeCCCCC
Confidence            4566677777888889999999999888888899999999865532   22222466789999999999888877666  


Q ss_pred             --CeEEEEECCCCcEEEEeC--CCCCceEEEEEeCCCCeEEEeeCC----CceeEEEEeCCCCeeEeeeCcCCCceEEEE
Q 042434          289 --EVLKLWDVETGICKHTFG--DHGFIVSSCAWFPDSKRLVCGSSD----TEKGIFMCDCDGNEIKAWRGTRIPKVLDLA  360 (517)
Q Consensus       289 --g~i~iwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~d----~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~  360 (517)
                        +.|.+||..++.....+.  .+...+.+++++|+|+.+++...+    +...++.++..+.....+... ...+..++
T Consensus       110 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~i~  188 (333)
T 2dg1_A          110 STGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN-ISVANGIA  188 (333)
T ss_dssp             SCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE-ESSEEEEE
T ss_pred             CCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC-CCcccceE
Confidence              689999998887654433  345678999999999877766531    234489998876554443322 23578899


Q ss_pred             EccCCCEEEEE-eCCCcEEEEECCC-ce-EE------ee--ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccc
Q 042434          361 VTPDGENLISV-LSDKDIRILNLGT-YA-ER------VI--SEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKP  429 (517)
Q Consensus       361 ~~~~~~~l~~~-~~dg~i~i~d~~~-~~-~~------~~--~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~  429 (517)
                      |+|+++.++++ +.++.|.+||..+ +. ..      ..  .....+..++++++|+.+++...++.|.+||..+  ...
T Consensus       189 ~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g--~~~  266 (333)
T 2dg1_A          189 LSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRG--YPI  266 (333)
T ss_dssp             ECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTS--CEE
T ss_pred             ECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCCC--CEE
Confidence            99999866544 5678999999853 21 11      11  1113678899999999888877889999999853  333


Q ss_pred             eEEeCccc---CceEEEeecCCCCCcEEEEecCCC
Q 042434          430 FKYTGHSQ---NKYVIRSCFGGLDGTFIASGSENS  461 (517)
Q Consensus       430 ~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~dg  461 (517)
                      ..+.....   ....+..+.+++|++.|+.++.++
T Consensus       267 ~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          267 GQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             EEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             EEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence            34432221   000123344478887776665553

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.70  E-value=3.2e-13  Score=124.58  Aligned_cols=279  Identities=9%  Similarity=-0.021  Sum_probs=192.1

Q ss_pred             ccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCC
Q 042434          219 TEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVET  298 (517)
Q Consensus       219 ~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~  298 (517)
                      ......+.+++++++|++.++...++.|.+|+.. + .... ..+..+...+.++++.++++..++...++.|..||.. 
T Consensus        16 ~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~-~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-   91 (300)
T 2qc5_A           16 SIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-G-RIKE-FEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-   91 (300)
T ss_dssp             SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S-CEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred             CCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-C-ceEE-EECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-
Confidence            3456788999999999988877778999999976 3 2222 2233344679999999999888877778899999987 


Q ss_pred             CcEEE-EeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcE
Q 042434          299 GICKH-TFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDI  377 (517)
Q Consensus       299 ~~~~~-~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  377 (517)
                      ++... ........+.++++.++++.+++...++.  ++.++..+.............+..+++.++++..++...++.|
T Consensus        92 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~--i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i  169 (300)
T 2qc5_A           92 GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDR--IGKLTADGTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSI  169 (300)
T ss_dssp             SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTE--EEEECTTSCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEE
T ss_pred             CCeEEecCCCCCCCCccceECCCCCEEEEccCCCe--EEEECCCCCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeE
Confidence            65432 22234567899999999988777766666  8888888443322222233468899999999976666667899


Q ss_pred             EEEECCCce-EEee--ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEE
Q 042434          378 RILNLGTYA-ERVI--SEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFI  454 (517)
Q Consensus       378 ~i~d~~~~~-~~~~--~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  454 (517)
                      ..+|. ++. ....  .....+..+++++++..+++....+.|..||.... ..........   ..+..+.++++|++.
T Consensus       170 ~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~-~~~~~~~~~~---~~~~~i~~d~~g~l~  244 (300)
T 2qc5_A          170 GRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGE-ISEYDIPTPN---ARPHAITAGKNSEIW  244 (300)
T ss_dssp             EEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCC-EEEEECSSTT---CCEEEEEECSTTCEE
T ss_pred             EEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCCc-EEEEECCCCC---CCceEEEECCCCCEE
Confidence            99998 444 2221  23346889999999987777667788999998332 2211111111   223445558889877


Q ss_pred             EEecCCCcEEEEecCCCceeE-EecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCC
Q 042434          455 ASGSENSQIYIWNRRNSKPIE-ILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPC  512 (517)
Q Consensus       455 ~~~~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~  512 (517)
                      ++...++.|..||. +++... .+......+.++++.++| .++++.. . .|..+++.
T Consensus       245 v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~-~-~i~~~~p~  299 (300)
T 2qc5_A          245 FTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDG-SVWFALK-C-KIGKLNLN  299 (300)
T ss_dssp             EEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTS-CEEEECS-S-EEEEEEEC
T ss_pred             EeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCC-CEEEEcc-C-ceEEeCCC
Confidence            77767789999998 454332 233345678999999998 5655554 4 66666653

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.70  E-value=1.6e-14  Score=133.31  Aligned_cols=246  Identities=11%  Similarity=0.014  Sum_probs=173.4

Q ss_pred             cccEEEeccccCcEEEEEECCCCC-EEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCe
Q 042434          212 TETVQILTEHKNEVWFVQFSNNGE-YLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEV  290 (517)
Q Consensus       212 ~~~~~~l~~h~~~v~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~  290 (517)
                      ...+..+..+.....+++|+|+|+ +++++..++.|..|+..++     ...+..+...+.+++++|+|+++++...++.
T Consensus        17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~   91 (296)
T 3e5z_A           17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-----LSPEMHPSHHQNGHCLNKQGHLIACSHGLRR   91 (296)
T ss_dssp             TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-----EEEEESSCSSEEEEEECTTCCEEEEETTTTE
T ss_pred             CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-----eEEEECCCCCcceeeECCCCcEEEEecCCCe
Confidence            344566667778889999999998 7788888999999998644     2345567788999999999998888777789


Q ss_pred             EEEEECCCCcEEEEeCCC----CCceEEEEEeCCCCeEEE----eeC-----------CCceeEEEEeCCCCeeEeeeCc
Q 042434          291 LKLWDVETGICKHTFGDH----GFIVSSCAWFPDSKRLVC----GSS-----------DTEKGIFMCDCDGNEIKAWRGT  351 (517)
Q Consensus       291 i~iwd~~~~~~~~~~~~~----~~~v~~i~~~~~~~~l~~----~~~-----------d~~v~i~~~~~~~~~~~~~~~~  351 (517)
                      |.+||..+++........    ...+..++++|+|+++++    |+.           .+...|+.++..+. .......
T Consensus        92 i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~-~~~~~~~  170 (296)
T 3e5z_A           92 LERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGT-LSAPIRD  170 (296)
T ss_dssp             EEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSC-EEEEECC
T ss_pred             EEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCC-EEEeecC
Confidence            999999888765443221    234667999999998887    331           01224898988743 3333322


Q ss_pred             CCCceEEEEEccCCCEEEEEeCCCcEEEEECC-CceE-----EeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 042434          352 RIPKVLDLAVTPDGENLISVLSDKDIRILNLG-TYAE-----RVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK  425 (517)
Q Consensus       352 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~-----~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~  425 (517)
                       ......++|+|+++.+++.+.++.|.+||+. ++..     ........+..++++++|+.+++.  ++.|.+||..+ 
T Consensus       171 -~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~g-  246 (296)
T 3e5z_A          171 -RVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPDG-  246 (296)
T ss_dssp             -CSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTTS-
T ss_pred             -CCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCCC-
Confidence             2367899999999988777778999999986 2222     111233456789999999866655  88999999864 


Q ss_pred             CccceEEeCcccCceEEEeecC-CCCCcEEEEecCCCcEEEEecCCCce
Q 042434          426 WEKPFKYTGHSQNKYVIRSCFG-GLDGTFIASGSENSQIYIWNRRNSKP  473 (517)
Q Consensus       426 ~~~~~~~~~~~~~~~~i~~~~~-s~~~~~l~~~~~dg~i~iwd~~~~~~  473 (517)
                       .....+..+..    +..+.+ +++++.|++++.++ +.-++..+.++
T Consensus       247 -~~~~~~~~~~~----~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~  289 (296)
T 3e5z_A          247 -DELGRVLTPQT----TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGL  289 (296)
T ss_dssp             -CEEEEEECSSC----CCEEEEESTTSCEEEEEETTE-EEEEECSCCBC
T ss_pred             -CEEEEEECCCC----ceeEEEECCCCCEEEEEcCCe-EEEEEcccccc
Confidence             34444444333    223333 68999888888764 55666666554

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.70  E-value=9.6e-15  Score=136.67  Aligned_cols=259  Identities=10%  Similarity=-0.000  Sum_probs=176.8

Q ss_pred             CCCcEEEEEecCCCeeeEEEEec------cCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEE
Q 042434          242 SDCSAIIWKVLEDSKLTLKHTLR------SHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSC  315 (517)
Q Consensus       242 ~dg~i~iw~~~~~~~~~~~~~~~------~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i  315 (517)
                      .+++|.+||..++.   ....+.      ........+.+. +++..++...++.|.+||..+++.+.++. .......+
T Consensus        15 ~~~~l~~~d~~t~~---~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i   89 (328)
T 3dsm_A           15 SNATLSYYDPATCE---VENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYI   89 (328)
T ss_dssp             CCBEEEEEETTTTE---EECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEE
T ss_pred             CCceEEEEECCCCE---EhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEE
Confidence            47899999997652   222221      122446778774 44555666668999999999999988884 45678899


Q ss_pred             EEeCCCCeEEEeeCCCceeEEEEeCCCCeeE-eeeCcC----CCceEEEEEccCCCEEEEEe--CCCcEEEEECCCce-E
Q 042434          316 AWFPDSKRLVCGSSDTEKGIFMCDCDGNEIK-AWRGTR----IPKVLDLAVTPDGENLISVL--SDKDIRILNLGTYA-E  387 (517)
Q Consensus       316 ~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~-~~~~~~----~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~-~  387 (517)
                      +++++++.+++...++.  |..+|..+..+. .+....    ......+++  ++..++++.  .++.|.++|+.+.+ .
T Consensus        90 ~~~~~g~lyv~~~~~~~--v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~  165 (328)
T 3dsm_A           90 HFLSDEKAYVTQIWDYR--IFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVV  165 (328)
T ss_dssp             EEEETTEEEEEEBSCSE--EEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEE
T ss_pred             EEeCCCeEEEEECCCCe--EEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEE
Confidence            99999854444437777  889999876654 333222    013456666  344555554  48899999999877 3


Q ss_pred             EeeccCCCeeEEEEcCCCCEEEEEeCC----------CeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEe
Q 042434          388 RVISEEHPITSLSVSVDCKNFIVNLNS----------QEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASG  457 (517)
Q Consensus       388 ~~~~~~~~i~~~~~s~~~~~l~~~~~d----------~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  457 (517)
                      ...........+.++|+|+.++++..+          +.|.++|..+. .....+......  ....++++|++++++++
T Consensus       166 ~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~-~v~~~~~~~~g~--~p~~la~~~d~~~lyv~  242 (328)
T 3dsm_A          166 DELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF-TVEKQFKFKLGD--WPSEVQLNGTRDTLYWI  242 (328)
T ss_dssp             EEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT-EEEEEEECCTTC--CCEEEEECTTSCEEEEE
T ss_pred             EEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC-eEEEEEecCCCC--CceeEEEecCCCEEEEE
Confidence            344445567789999999977777655          78999998776 333333321110  13345558999988887


Q ss_pred             cCCCcEEEEecCCCceeEE--ecCCCCCeeEEEecCCCCcEEEEe----eCCCcEEEeCCCCCC
Q 042434          458 SENSQIYIWNRRNSKPIEI--LSGHSMTVNCVSWNPKRPKMLASA----SDDHTIRIWGPCQSS  515 (517)
Q Consensus       458 ~~dg~i~iwd~~~~~~~~~--~~~h~~~v~~v~~~~~~~~~l~s~----~~dg~v~iw~~~~~~  515 (517)
                      ..  .|++||..+++....  +..+.....+++++|++..++++.    ..++.|.+|+.. ++
T Consensus       243 ~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~  303 (328)
T 3dsm_A          243 NN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GK  303 (328)
T ss_dssp             SS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CC
T ss_pred             cc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CC
Confidence            65  899999998876421  222246789999999554777777    678999999997 54

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.70  E-value=2e-14  Score=130.50  Aligned_cols=212  Identities=9%  Similarity=0.018  Sum_probs=163.0

Q ss_pred             CCCeEEEEeCCCeEEEEECCCCcEEEEeCCCC-CceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCce
Q 042434          278 DDTKLLTCGNAEVLKLWDVETGICKHTFGDHG-FIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKV  356 (517)
Q Consensus       278 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i  356 (517)
                      .++.|++++.++.|.+||.++|+.+.++..+. ..+.++.++|+|+.+++  .++.  ++.+|..++.+..+.......+
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~--V~~~d~~G~~~W~~~~~~~~~~   79 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFS--YSKG--AKMITRDGRELWNIAAPAGCEM   79 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEE--CBSE--EEEECTTSCEEEEEECCTTCEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEe--CCCC--EEEECCCCCEEEEEcCCCCccc
Confidence            45789999999999999999999999997765 57889999999998883  3455  8999998887777776543478


Q ss_pred             EEEEEccCCCEEEEEeC-CCcEEEEECCCceEEeec-------cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcc
Q 042434          357 LDLAVTPDGENLISVLS-DKDIRILNLGTYAERVIS-------EEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEK  428 (517)
Q Consensus       357 ~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~-------~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~  428 (517)
                      .++.+.++|+.+++.+. ++.+..+|..........       +......+++.++|+++++...++.|..||.. + +.
T Consensus        80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G-~~  157 (276)
T 3no2_A           80 QTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G-QL  157 (276)
T ss_dssp             EEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S-CE
T ss_pred             cccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C-CE
Confidence            89999999999999887 788888887443322221       11234566789999999999999999999987 4 56


Q ss_pred             ceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCC------CCeeEEEecCCCCcEEEEe
Q 042434          429 PFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHS------MTVNCVSWNPKRPKMLASA  500 (517)
Q Consensus       429 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~------~~v~~v~~~~~~~~~l~s~  500 (517)
                      ...+...... ..   ....++|+++++++.++.|..+|..+|+.+.++..+.      ..+.+++..++| .++++.
T Consensus       158 ~w~~~~~~~~-~~---~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G-~i~v~~  230 (276)
T 3no2_A          158 LNSVKLSGTP-FS---SAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNG-GLYICN  230 (276)
T ss_dssp             EEEEECSSCC-CE---EEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTS-CEEEEE
T ss_pred             EEEEECCCCc-cc---eeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCC-CEEEEe
Confidence            6666543222 11   2225789999999988999999999999998886432      237888899998 566665

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.68  E-value=1.2e-14  Score=132.02  Aligned_cols=239  Identities=8%  Similarity=-0.044  Sum_probs=165.5

Q ss_pred             cEEEEEECCCCCEEE-EeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEE
Q 042434          224 EVWFVQFSNNGEYLA-SSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICK  302 (517)
Q Consensus       224 ~v~~~~~s~~~~~l~-t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~  302 (517)
                      ...+++++++|++++ +.+.++.|.+|+..+..   .......+...+.+++++++++++++.. ++.|.+||..++...
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~  100 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTG---TTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT  100 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC--------EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcc---cceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe
Confidence            778999999999777 54678899999864332   1111123335688999999998666655 889999998765543


Q ss_pred             EEeC-CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEE
Q 042434          303 HTFG-DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILN  381 (517)
Q Consensus       303 ~~~~-~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  381 (517)
                       .+. .....+.++++.++|+.+++...++.  |+.++..+.............+.+++++++|+.+++...++.|.+||
T Consensus       101 -~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~--i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~  177 (270)
T 1rwi_B          101 -VLPFDGLNYPEGLAVDTQGAVYVADRGNNR--VVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLE  177 (270)
T ss_dssp             -ECCCCSCSSEEEEEECTTCCEEEEEGGGTE--EEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEEC
T ss_pred             -eeecCCcCCCcceEECCCCCEEEEECCCCE--EEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEe
Confidence             332 23367899999999987777666777  77777654433322222223578899999999777777788999999


Q ss_pred             CCCceEEee--ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecC
Q 042434          382 LGTYAERVI--SEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSE  459 (517)
Q Consensus       382 ~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  459 (517)
                      ..+......  .....+..++++++|..+++...++.|..||..+....  .... . .......+.++++|+++++...
T Consensus       178 ~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~--~~~~-~-~~~~p~~i~~~~~g~l~v~~~~  253 (270)
T 1rwi_B          178 AESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST--VLPF-T-GLNTPLAVAVDSDRTVYVADRG  253 (270)
T ss_dssp             TTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCE--ECCC-C-SCSCEEEEEECTTCCEEEEEGG
T ss_pred             cCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcce--eecc-C-CCCCceeEEECCCCCEEEEECC
Confidence            887663222  22356889999999977777777889999998664221  1111 1 1112445556899998888889


Q ss_pred             CCcEEEEecCCCce
Q 042434          460 NSQIYIWNRRNSKP  473 (517)
Q Consensus       460 dg~i~iwd~~~~~~  473 (517)
                      ++.|++++....+.
T Consensus       254 ~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          254 NDRVVKLTSLEHHH  267 (270)
T ss_dssp             GTEEEEECCCGGGS
T ss_pred             CCEEEEEcCCCccc
Confidence            99999999875543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.68  E-value=1.1e-13  Score=137.90  Aligned_cols=273  Identities=11%  Similarity=0.044  Sum_probs=189.0

Q ss_pred             CCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECC--CCcEEEEeCCCC
Q 042434          232 NNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVE--TGICKHTFGDHG  309 (517)
Q Consensus       232 ~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~  309 (517)
                      |.+.++++...++.|.++|..++.   .+.++.. ...+..+.|+|||+++++++.|+.|.+||+.  +++.+..+.. .
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~---v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~-G  239 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYE---IKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-G  239 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCC---EEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-C
T ss_pred             CCceEEEEeCCCCeEEEEECCCCe---EEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec-C
Confidence            445567777889999999997663   3344432 3467799999999999999999999999996  8888887754 3


Q ss_pred             CceEEEEEe----CCCCeEEEeeCC-CceeEEEEeCCCCee-EeeeCc----------CCCceEEEEEccCCCEE-EEEe
Q 042434          310 FIVSSCAWF----PDSKRLVCGSSD-TEKGIFMCDCDGNEI-KAWRGT----------RIPKVLDLAVTPDGENL-ISVL  372 (517)
Q Consensus       310 ~~v~~i~~~----~~~~~l~~~~~d-~~v~i~~~~~~~~~~-~~~~~~----------~~~~i~~~~~~~~~~~l-~~~~  372 (517)
                      .....++|+    |||++++++... +.  +.++|..+... ..+...          ....+..+..++++..+ +...
T Consensus       240 ~~P~~ia~s~~~~pDGk~l~v~n~~~~~--v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~  317 (567)
T 1qks_A          240 SEARSIETSKMEGWEDKYAIAGAYWPPQ--YVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK  317 (567)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEETTE--EEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred             CCCceeEEccccCCCCCEEEEEEccCCe--EEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEec
Confidence            446899999    699988887664 66  67778765433 333211          12357788889887654 4455


Q ss_pred             CCCcEEEEECCCce---EEeeccCCCeeEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCccceEEeC--c-ccCceEEEee
Q 042434          373 SDKDIRILNLGTYA---ERVISEEHPITSLSVSVDCKNFIVNL-NSQEIHMWDVAGKWEKPFKYTG--H-SQNKYVIRSC  445 (517)
Q Consensus       373 ~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~--~-~~~~~~i~~~  445 (517)
                      .+|.|.++|.....   ...+........+.|+|++++++++. .++.|.++|+.++ ........  . ........  
T Consensus       318 ~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~-kl~~~i~vgg~~Phpg~g~~--  394 (567)
T 1qks_A          318 ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG-KLVAIEDTGGQTPHPGRGAN--  394 (567)
T ss_dssp             TTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT-EEEEEEECSSSSBCCTTCEE--
T ss_pred             CCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCC-cEEEEEeccCcCCCCcccee--
Confidence            67999999987653   33334455677899999999987766 5789999999876 44333332  1 11111122  


Q ss_pred             cCCCCCc-EEEEec-CCCcEEEEecCC-------CceeEEecCCCCCeeEEEecCCCCcEEEEeeC------CCcEEEeC
Q 042434          446 FGGLDGT-FIASGS-ENSQIYIWNRRN-------SKPIEILSGHSMTVNCVSWNPKRPKMLASASD------DHTIRIWG  510 (517)
Q Consensus       446 ~~s~~~~-~l~~~~-~dg~i~iwd~~~-------~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~------dg~v~iw~  510 (517)
                      +++|++. ..+++. .++.|.++|..+       .+.+.++......-..+..+|+++++.++...      .++|.++|
T Consensus       395 ~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d  474 (567)
T 1qks_A          395 FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFD  474 (567)
T ss_dssp             EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEE
T ss_pred             eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEE
Confidence            2367744 444443 468999999987       67788887654444568899999544443321      35899999


Q ss_pred             CCCC
Q 042434          511 PCQS  514 (517)
Q Consensus       511 ~~~~  514 (517)
                      +.+.
T Consensus       475 ~~~~  478 (567)
T 1qks_A          475 IKAM  478 (567)
T ss_dssp             GGGC
T ss_pred             CCcc
Confidence            8765

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.67  E-value=4.5e-13  Score=127.00  Aligned_cols=273  Identities=8%  Similarity=-0.023  Sum_probs=179.1

Q ss_pred             ECCCCCEEEEeeC--CC---cEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEe----------CCCeEEEE
Q 042434          230 FSNNGEYLASSSS--DC---SAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCG----------NAEVLKLW  294 (517)
Q Consensus       230 ~s~~~~~l~t~~~--dg---~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~----------~dg~i~iw  294 (517)
                      ..|+++++++...  ..   .|.+||..++   +...++.....+  .++++|||++++++.          .++.|.+|
T Consensus        28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~---~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~vi  102 (373)
T 2mad_H           28 PGADGRRSYINLPAHHSAIIQQWVLDAGSG---SILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVF  102 (373)
T ss_pred             CCCCCCEEEEeCCcccCCccEEEEEECCCC---eEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEE
Confidence            3467776666543  22   7899998765   344555544444  999999999999875          36789999


Q ss_pred             ECCCCcEEEEeCCC-------CCceEEEEEeCCCCeEEEeeC--CCceeEEEEeCCCCeeEee-eCcCCCceEEEEEccC
Q 042434          295 DVETGICKHTFGDH-------GFIVSSCAWFPDSKRLVCGSS--DTEKGIFMCDCDGNEIKAW-RGTRIPKVLDLAVTPD  364 (517)
Q Consensus       295 d~~~~~~~~~~~~~-------~~~v~~i~~~~~~~~l~~~~~--d~~v~i~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~  364 (517)
                      |..+.+.+..+...       ......++|+|||++++++..  ++.  |.++| .+..+... ....    .++.+.|+
T Consensus       103 D~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~--v~viD-~t~~~~~~~i~~~----~~~~~~~~  175 (373)
T 2mad_H          103 DPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA--VGLVV-QGGSSDDQLLSSP----TCYHIHPG  175 (373)
T ss_pred             ECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe--EEEEE-CCCCEEeEEcCCC----ceEEEEeC
Confidence            99998887766432       133568999999999999875  355  77778 76544322 2211    12444555


Q ss_pred             C-CEEEEEeCCCcEEEEECCCceEE-ee------ccCCC-eeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccc-eEEeC
Q 042434          365 G-ENLISVLSDKDIRILNLGTYAER-VI------SEEHP-ITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKP-FKYTG  434 (517)
Q Consensus       365 ~-~~l~~~~~dg~i~i~d~~~~~~~-~~------~~~~~-i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~-~~~~~  434 (517)
                      + +.+++.+.||.+.++|. +++.. ..      ....+ .....+.+++..++..+..+.+.+.|+.+..... ..+..
T Consensus       176 ~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~  254 (373)
T 2mad_H          176 APSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDA  254 (373)
T ss_pred             CCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeee
Confidence            5 45667778999999999 66522 11      11111 1234566666665555678899999986542111 11110


Q ss_pred             ccc-------CceEEEeecCCCCCcEEEEecC----------CCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEE
Q 042434          435 HSQ-------NKYVIRSCFGGLDGTFIASGSE----------NSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKML  497 (517)
Q Consensus       435 ~~~-------~~~~i~~~~~s~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l  497 (517)
                      ...       .......+.++++++.++++..          ++.|.++|..+++.+.++.. .....+++|+|||..++
T Consensus       255 ~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l  333 (373)
T 2mad_H          255 LSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDL  333 (373)
T ss_pred             cCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEE
Confidence            000       0001222345889888877643          35799999999999998863 34689999999994367


Q ss_pred             EEee-CCCcEEEeCCCCCCC
Q 042434          498 ASAS-DDHTIRIWGPCQSSE  516 (517)
Q Consensus       498 ~s~~-~dg~v~iw~~~~~~~  516 (517)
                      +++. .++.|.+||+.+++.
T Consensus       334 ~v~~~~~~~V~ViD~~t~~v  353 (373)
T 2mad_H          334 YALSAGTEVLHIYDAGAGDQ  353 (373)
T ss_pred             EEEcCCCCeEEEEECCCCCE
Confidence            7766 589999999998774

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.66  E-value=1.4e-14  Score=151.16  Aligned_cols=278  Identities=13%  Similarity=0.067  Sum_probs=176.6

Q ss_pred             CCCCEEEEeeCCCc---EEEEEecC----CCeeeEEEE----eccCCCCEEEEEECCCCCeEEEEeCC-----CeEEEEE
Q 042434          232 NNGEYLASSSSDCS---AIIWKVLE----DSKLTLKHT----LRSHQNPVSFVAWSPDDTKLLTCGNA-----EVLKLWD  295 (517)
Q Consensus       232 ~~~~~l~t~~~dg~---i~iw~~~~----~~~~~~~~~----~~~h~~~v~~l~~s~~~~~l~s~~~d-----g~i~iwd  295 (517)
                      |+|++++....++.   -.+|....    +.....+..    -.+|...+..++|||||++|+.++.+     ..|++||
T Consensus       116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d  195 (741)
T 1yr2_A          116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG  195 (741)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred             EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence            77887776654433   56666542    222222111    12233468899999999999877553     3699999


Q ss_pred             CCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCc------------eeEEEEeCCCCe---eEeeeCcC-CCceEEE
Q 042434          296 VETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTE------------KGIFMCDCDGNE---IKAWRGTR-IPKVLDL  359 (517)
Q Consensus       296 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~------------v~i~~~~~~~~~---~~~~~~~~-~~~i~~~  359 (517)
                      +.+|+.+... .+...+..++|+|| +.|+.++.++.            ..|+.|+..+..   ...+.... ...+..+
T Consensus       196 l~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~  273 (741)
T 1yr2_A          196 VADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGA  273 (741)
T ss_dssp             TTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEE
T ss_pred             CCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEE
Confidence            9999876532 12222357899999 99988887653            248899986543   22222221 1247899


Q ss_pred             EEccCCCEEEEEeCCC-----cEEEEECCCc--e--EEeeccCCCeeEEEEcCCCCEEEEEeCC----CeEEEEEcCCCC
Q 042434          360 AVTPDGENLISVLSDK-----DIRILNLGTY--A--ERVISEEHPITSLSVSVDCKNFIVNLNS----QEIHMWDVAGKW  426 (517)
Q Consensus       360 ~~~~~~~~l~~~~~dg-----~i~i~d~~~~--~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d----~~i~~~d~~~~~  426 (517)
                      .|+|||++++..+.++     .|++||+.++  .  ............. ++|+|+.++..+.+    +.|.+||+.+..
T Consensus       274 ~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~  352 (741)
T 1yr2_A          274 SVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGST  352 (741)
T ss_dssp             EECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSS
T ss_pred             EECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCc
Confidence            9999999988877544     8999999765  2  2333333334444 45899998888763    459999987631


Q ss_pred             ccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecC-CCceeEEecC-CCCCeeEEEecCCCCcEEEEee---
Q 042434          427 EKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRR-NSKPIEILSG-HSMTVNCVSWNPKRPKMLASAS---  501 (517)
Q Consensus       427 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~-h~~~v~~v~~~~~~~~~l~s~~---  501 (517)
                      .....+..+...  .+..+.++ ++.++++...|+..++|.+. ++.....+.. +.+.+..+.++|++..++++.+   
T Consensus       353 ~~~~~l~~~~~~--~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~  429 (741)
T 1yr2_A          353 PRFDTVVPESKD--NLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFT  429 (741)
T ss_dssp             CEEEEEECCCSS--EEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETT
T ss_pred             cccEEEecCCCC--eEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCC
Confidence            111222222222  23333333 56788888889877777544 4666666664 3677899999999854555444   


Q ss_pred             CCCcEEEeCCCCCC
Q 042434          502 DDHTIRIWGPCQSS  515 (517)
Q Consensus       502 ~dg~v~iw~~~~~~  515 (517)
                      ..++|++||+.+++
T Consensus       430 ~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          430 QPATVLALDPATAK  443 (741)
T ss_dssp             EEEEEEEEETTTTE
T ss_pred             CCCEEEEEECCCCc
Confidence            35789999988754

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.65  E-value=1.3e-13  Score=128.33  Aligned_cols=244  Identities=11%  Similarity=0.075  Sum_probs=168.4

Q ss_pred             CCCCEEEEEECCCCCeEEE-------EeCCCeEEEEECCCCcEEEEeC----CCCCceEEEEEeCC-CCeEEEeeCCCce
Q 042434          266 HQNPVSFVAWSPDDTKLLT-------CGNAEVLKLWDVETGICKHTFG----DHGFIVSSCAWFPD-SKRLVCGSSDTEK  333 (517)
Q Consensus       266 h~~~v~~l~~s~~~~~l~s-------~~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~i~~~~~-~~~l~~~~~d~~v  333 (517)
                      .-....+++|++++..+++       +..++.|.+||..+++......    ++...+.+++++++ ++++++...+ . 
T Consensus        16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~-~-   93 (314)
T 1pjx_A           16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRL-G-   93 (314)
T ss_dssp             CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTT-E-
T ss_pred             cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCC-C-
Confidence            3456789999999988877       5778899999988887653322    14467899999999 6655544433 3 


Q ss_pred             eEEEEeCCCCeeEee-eC----cCCCceEEEEEccCCCEEEEEeCC---------------CcEEEEECCCce-EEeecc
Q 042434          334 GIFMCDCDGNEIKAW-RG----TRIPKVLDLAVTPDGENLISVLSD---------------KDIRILNLGTYA-ERVISE  392 (517)
Q Consensus       334 ~i~~~~~~~~~~~~~-~~----~~~~~i~~~~~~~~~~~l~~~~~d---------------g~i~i~d~~~~~-~~~~~~  392 (517)
                       ++.|+.. .....+ ..    .....+.+++++++|+.+++...+               +.|..||.. +. ......
T Consensus        94 -l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~  170 (314)
T 1pjx_A           94 -LLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTA  170 (314)
T ss_dssp             -EEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEE
T ss_pred             -EEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccC
Confidence             8889988 444433 21    112357899999999887776655               578888876 33 333333


Q ss_pred             CCCeeEEEEc----CCCCEEEEE-eCCCeEEEEEcC-CCCc-cceEEeCcccCc-eEEEeecCCCCCcEEEEecCCCcEE
Q 042434          393 EHPITSLSVS----VDCKNFIVN-LNSQEIHMWDVA-GKWE-KPFKYTGHSQNK-YVIRSCFGGLDGTFIASGSENSQIY  464 (517)
Q Consensus       393 ~~~i~~~~~s----~~~~~l~~~-~~d~~i~~~d~~-~~~~-~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~~dg~i~  464 (517)
                      ......++++    |+++.++++ ..++.|.+||.. .+.. ....+....... .....+.++++|++.++...++.|.
T Consensus       171 ~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~  250 (314)
T 1pjx_A          171 FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIE  250 (314)
T ss_dssp             ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEE
T ss_pred             CCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEE
Confidence            4456889999    999766555 567899999975 2211 111111111111 2234455688999888877888999


Q ss_pred             EEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCC
Q 042434          465 IWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQS  514 (517)
Q Consensus       465 iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~  514 (517)
                      +||..+++.+..+..+...+.+++|+|++..++++...++.|..|++...
T Consensus       251 ~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          251 VFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             EECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             EEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence            99998888877777777889999999999336666667789999998753

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.62  E-value=2.7e-12  Score=118.25  Aligned_cols=237  Identities=9%  Similarity=0.012  Sum_probs=169.8

Q ss_pred             ccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEE-eCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC
Q 042434          264 RSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHT-FGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG  342 (517)
Q Consensus       264 ~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~  342 (517)
                      ..+...+.+++++++|+..++...++.|.+||.. ++.... .......+.++++.+++..+++...++.  ++.|+..+
T Consensus        11 ~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~--i~~~~~~g   87 (299)
T 2z2n_A           11 TNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANK--IGRITKKG   87 (299)
T ss_dssp             CSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTE--EEEECTTS
T ss_pred             CCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCe--EEEECCCC
Confidence            3455789999999999988777668899999988 654432 2234577899999999988877766776  88888875


Q ss_pred             CeeEeeeC-cCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEee--ccCCCeeEEEEcCCCCEEEEEeCCCeEE
Q 042434          343 NEIKAWRG-TRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVI--SEEHPITSLSVSVDCKNFIVNLNSQEIH  418 (517)
Q Consensus       343 ~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~--~~~~~i~~~~~s~~~~~l~~~~~d~~i~  418 (517)
                      . ...+.. .....+..+++.+++..+++...++.|.+||. ++. ....  .....+..++++++++.+++...++.|.
T Consensus        88 ~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~  165 (299)
T 2z2n_A           88 I-IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIG  165 (299)
T ss_dssp             C-EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred             c-EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEE
Confidence            4 333332 23346889999999988887777889999998 444 2221  2345688999999998877777788999


Q ss_pred             EEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEE-ecCCCCCeeEEEecCCCCcEE
Q 042434          419 MWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEI-LSGHSMTVNCVSWNPKRPKML  497 (517)
Q Consensus       419 ~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~v~~~~~~~~~l  497 (517)
                      .||. ++...........   ..+..+.++++|++.++...++.|.+||. +++.... +..+...+.+++++++| .++
T Consensus       166 ~~~~-~g~~~~~~~~~~~---~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g-~l~  239 (299)
T 2z2n_A          166 RITE-SGDITEFKIPTPA---SGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGI-DLW  239 (299)
T ss_dssp             EECT-TCCEEEEECSSTT---CCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTT-CEE
T ss_pred             EEcC-CCcEEEeeCCCCC---CcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCC-CEE
Confidence            9998 4312111111111   12344555888988777777889999998 6664332 33455778999999998 677


Q ss_pred             EEeeCCCcEEEeCC
Q 042434          498 ASASDDHTIRIWGP  511 (517)
Q Consensus       498 ~s~~~dg~v~iw~~  511 (517)
                      ++...++.|..|+.
T Consensus       240 v~~~~~~~i~~~d~  253 (299)
T 2z2n_A          240 FTEWGANKIGRLTS  253 (299)
T ss_dssp             EEETTTTEEEEEET
T ss_pred             EeccCCceEEEECC
Confidence            66667788999987

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.60  E-value=2.7e-13  Score=126.62  Aligned_cols=272  Identities=10%  Similarity=0.049  Sum_probs=178.6

Q ss_pred             ECCCCCEEEEeeC-----CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEe----------CCCeEEEE
Q 042434          230 FSNNGEYLASSSS-----DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCG----------NAEVLKLW  294 (517)
Q Consensus       230 ~s~~~~~l~t~~~-----dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~----------~dg~i~iw  294 (517)
                      ..|+++.++....     ++.|.+.|..+.   +.+.++.....+ . ++++|||+++++++          .++.|.+|
T Consensus        40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~---~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vsvi  114 (386)
T 3sjl_D           40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAG---RVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVF  114 (386)
T ss_dssp             CCCCTTEEEEEECGGGCSSEEEEEEETTTT---EEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             cCCCCCEEEEEcCcccCCCCEEEEEECCCC---eEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEE
Confidence            4578887777654     678999998765   444555544455 4 99999999988775          36789999


Q ss_pred             ECCCCcEEEEeCCC-------CCceEEEEEeCCCCeEEEeeC--CCceeEEEEeCCCCeeE-eeeCcCCCceEEEEEccC
Q 042434          295 DVETGICKHTFGDH-------GFIVSSCAWFPDSKRLVCGSS--DTEKGIFMCDCDGNEIK-AWRGTRIPKVLDLAVTPD  364 (517)
Q Consensus       295 d~~~~~~~~~~~~~-------~~~v~~i~~~~~~~~l~~~~~--d~~v~i~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~  364 (517)
                      |..+++.+..+.-.       ......++++|||++++++..  ++.  |.++|..+..+. .+....   . ...+...
T Consensus       115 D~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~--VsVID~~t~~vv~tI~v~g---~-~~~~P~g  188 (386)
T 3sjl_D          115 DPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA--VGVVDLEGKAFKRMLDVPD---C-YHIFPTA  188 (386)
T ss_dssp             CTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE--EEEEETTTTEEEEEEECCS---E-EEEEEEE
T ss_pred             ECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCe--EEEEECCCCcEEEEEECCC---c-ceeecCC
Confidence            99999988877422       124567999999999998865  456  889999876654 332221   1 2223334


Q ss_pred             CCEEEEEeCCCcEEEEECCC-ceEEe-e-cc----CCCe-eEEEEc-CCCCEEEEEeCCCeEEEEEcCCCCc-cceEEe-
Q 042434          365 GENLISVLSDKDIRILNLGT-YAERV-I-SE----EHPI-TSLSVS-VDCKNFIVNLNSQEIHMWDVAGKWE-KPFKYT-  433 (517)
Q Consensus       365 ~~~l~~~~~dg~i~i~d~~~-~~~~~-~-~~----~~~i-~~~~~s-~~~~~l~~~~~d~~i~~~d~~~~~~-~~~~~~-  433 (517)
                      .+.+++.+.||.+.+.++.+ ++... . ..    ..++ ....|. ++|+.++ .+.+|.+++.|+.+... ....+. 
T Consensus       189 ~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~  267 (386)
T 3sjl_D          189 PDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEA  267 (386)
T ss_dssp             TTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEES
T ss_pred             CceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceec
Confidence            45677778888888888865 33211 0 01    1122 123553 5665544 55589999999976421 222221 


Q ss_pred             --------CcccCceEEEeecCCCCCcEEEEecC----------CCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCc
Q 042434          434 --------GHSQNKYVIRSCFGGLDGTFIASGSE----------NSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPK  495 (517)
Q Consensus       434 --------~~~~~~~~i~~~~~s~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~  495 (517)
                              +.....  ...+.++++++.++....          .+.|.++|+.+++.+..+.. ...+.++++++++..
T Consensus       268 ~~~~~~~~g~~p~g--~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-g~~~~~lavs~D~~~  344 (386)
T 3sjl_D          268 LTEAERADGWRPGG--WQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKP  344 (386)
T ss_dssp             SCHHHHHTTEEECS--SSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECSSSSC
T ss_pred             cccccccccccCCC--cceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC-CCCcceEEECCCCCe
Confidence                    000100  112223678887777542          24799999999999998874 347889999999943


Q ss_pred             EEEE-eeCCCcEEEeCCCCCCC
Q 042434          496 MLAS-ASDDHTIRIWGPCQSSE  516 (517)
Q Consensus       496 ~l~s-~~~dg~v~iw~~~~~~~  516 (517)
                      +|++ ...++.|.++|..+++.
T Consensus       345 ~ly~tn~~~~~VsViD~~t~k~  366 (386)
T 3sjl_D          345 LLYALSTGDKTLYIHDAESGEE  366 (386)
T ss_dssp             EEEEEETTTTEEEEEETTTCCE
T ss_pred             EEEEEcCCCCeEEEEECCCCcE
Confidence            5544 55699999999998874

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.59  E-value=5.1e-13  Score=124.79  Aligned_cols=277  Identities=10%  Similarity=0.024  Sum_probs=176.6

Q ss_pred             CCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEee----------CCCcEEEEEecCCCeeeEEEEecc----CC
Q 042434          202 DHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSS----------SDCSAIIWKVLEDSKLTLKHTLRS----HQ  267 (517)
Q Consensus       202 ~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~----------~dg~i~iw~~~~~~~~~~~~~~~~----h~  267 (517)
                      +....++....+.+..+.....+ . +++||||+++++++          .++.|.+||..+......+..-.+    ..
T Consensus        59 ~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g  136 (386)
T 3sjl_D           59 TQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVG  136 (386)
T ss_dssp             EEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBS
T ss_pred             CEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccC
Confidence            34455666667777777765555 4 99999999887765          367899999976643332221110    01


Q ss_pred             CCEEEEEECCCCCeEEEEeC--CCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC-Ce
Q 042434          268 NPVSFVAWSPDDTKLLTCGN--AEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG-NE  344 (517)
Q Consensus       268 ~~v~~l~~s~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~-~~  344 (517)
                      .....++|+|||++++++..  ++.|.++|+.+++.+.++.....   ...+....+.+++.+.||.  +...+... ..
T Consensus       137 ~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~P~g~~~~~~~~~DG~--~~~v~~~~~g~  211 (386)
T 3sjl_D          137 TYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIFPTAPDTFFMHCRDGS--LAKVAFGTEGT  211 (386)
T ss_dssp             CCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSC--EEEEECCSSSC
T ss_pred             CCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceeecCCCceeEEECCCCC--EEEEECCCCCe
Confidence            24567899999999988764  68999999999999988853321   1223334456667777777  55555543 22


Q ss_pred             eEeeeCcC----CCce-EEEEEc-cCCCEEEEEeCCCcEEEEECCCceEEeec--------------cCCCeeEEEEcCC
Q 042434          345 IKAWRGTR----IPKV-LDLAVT-PDGENLISVLSDKDIRILNLGTYAERVIS--------------EEHPITSLSVSVD  404 (517)
Q Consensus       345 ~~~~~~~~----~~~i-~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--------------~~~~i~~~~~s~~  404 (517)
                      +.......    ...+ ....|. ++|++++ .+.+|.+++.|..+.......              .......++++++
T Consensus       212 v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~  290 (386)
T 3sjl_D          212 PEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRA  290 (386)
T ss_dssp             CEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETT
T ss_pred             EEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCC
Confidence            21111111    1112 223553 6775544 566899999999765411110              1223456788999


Q ss_pred             CCEEEEEeC----------CCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCc-EEEEe-cCCCcEEEEecCCCc
Q 042434          405 CKNFIVNLN----------SQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGT-FIASG-SENSQIYIWNRRNSK  472 (517)
Q Consensus       405 ~~~l~~~~~----------d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~-~~dg~i~iwd~~~~~  472 (517)
                      ++.+++...          .+.|.++|+.+. +.+..+....    ....+.+++|++ +|+++ ..++.|.++|..+++
T Consensus       291 ~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~-kv~~~i~vg~----~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k  365 (386)
T 3sjl_D          291 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTG-ERLAKFEMGH----EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE  365 (386)
T ss_dssp             TTEEEEEEEECCTTCTTSCEEEEEEEETTTC-CEEEEEEEEE----EECEEEECSSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             CCeEEEEeccccccccCCCCCEEEEEECCCC-eEEEEEECCC----CcceEEECCCCCeEEEEEcCCCCeEEEEECCCCc
Confidence            999888753          257999999887 4444443221    234555689986 66664 458999999999999


Q ss_pred             eeEEecCCCCCeeEEEecCC
Q 042434          473 PIEILSGHSMTVNCVSWNPK  492 (517)
Q Consensus       473 ~~~~~~~h~~~v~~v~~~~~  492 (517)
                      .+.++..- +.-+.+.+++|
T Consensus       366 ~~~~i~~~-~~p~~l~~s~d  384 (386)
T 3sjl_D          366 ELRSVNQL-GHGPQVITTAD  384 (386)
T ss_dssp             EEEEECCC-CSSCCEEEECC
T ss_pred             EEEEecCC-CCCceeEECCc
Confidence            99998743 44456666665

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.59  E-value=8.1e-13  Score=123.54  Aligned_cols=250  Identities=7%  Similarity=-0.007  Sum_probs=167.3

Q ss_pred             CcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEE
Q 042434          223 NEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICK  302 (517)
Q Consensus       223 ~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~  302 (517)
                      .....+.+. +++..++...++.|.+||..+++.   +.++. .......+++++++...++...++.|.+||..+++..
T Consensus        44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~---~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~  118 (328)
T 3dsm_A           44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKE---VGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEIT  118 (328)
T ss_dssp             SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCE---EEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEE
T ss_pred             ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEE---EEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEE
Confidence            456777774 345555666679999999976643   34443 3467899999999855455448999999999999887


Q ss_pred             EEeCCCC-----CceEEEEEeCCCCeEEEee--CCCceeEEEEeCCCCee-EeeeCcCCCceEEEEEccCCCEEEEEeCC
Q 042434          303 HTFGDHG-----FIVSSCAWFPDSKRLVCGS--SDTEKGIFMCDCDGNEI-KAWRGTRIPKVLDLAVTPDGENLISVLSD  374 (517)
Q Consensus       303 ~~~~~~~-----~~v~~i~~~~~~~~l~~~~--~d~~v~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  374 (517)
                      ..+....     .....+++  ++..++++.  .++.  |..+|..+..+ ..+....  ....+.++|+|+.++++..+
T Consensus       119 ~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~--v~viD~~t~~~~~~i~~g~--~p~~i~~~~dG~l~v~~~~~  192 (328)
T 3dsm_A          119 GYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNR--ILKIDTETDKVVDELTIGI--QPTSLVMDKYNKMWTITDGG  192 (328)
T ss_dssp             EEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCE--EEEEETTTTEEEEEEECSS--CBCCCEECTTSEEEEEBCCB
T ss_pred             EEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCE--EEEEECCCCeEEEEEEcCC--CccceEEcCCCCEEEEECCC
Confidence            7665332     14556777  345555554  3666  88999886554 3333322  45788999999877766554


Q ss_pred             ----------CcEEEEECCCceEE-eecc--CCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceE
Q 042434          375 ----------KDIRILNLGTYAER-VISE--EHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYV  441 (517)
Q Consensus       375 ----------g~i~i~d~~~~~~~-~~~~--~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~  441 (517)
                                +.|.++|..+.+.. ....  ......++++|+++.++++..  .|.+||..+.......+....  ...
T Consensus       193 ~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~--~~~  268 (328)
T 3dsm_A          193 YEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFR--DTK  268 (328)
T ss_dssp             CTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCC--SSC
T ss_pred             ccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCC--CCc
Confidence                      78999999887722 2222  346899999999999888765  899999976532211111110  112


Q ss_pred             EEeecCCC-CCcEEEEe----cCCCcEEEEecCCCceeEEecCCCCCeeEEEe
Q 042434          442 IRSCFGGL-DGTFIASG----SENSQIYIWNRRNSKPIEILSGHSMTVNCVSW  489 (517)
Q Consensus       442 i~~~~~s~-~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~  489 (517)
                      ...+.++| ++.+.++.    ..++.|.+||.. ++.+.++.. ......++|
T Consensus       269 p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~-G~~P~~~~~  319 (328)
T 3dsm_A          269 YYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV-GIIPGAFCW  319 (328)
T ss_dssp             EEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE-EESEEEEEE
T ss_pred             eEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEe-ccCcceEEE
Confidence            33445577 56666665    578899999998 998888763 233355555

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.59  E-value=3.2e-12  Score=117.75  Aligned_cols=232  Identities=11%  Similarity=0.066  Sum_probs=155.8

Q ss_pred             cCCCCEEEEEECCCC-CeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCC
Q 042434          265 SHQNPVSFVAWSPDD-TKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGN  343 (517)
Q Consensus       265 ~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~  343 (517)
                      .+..-.-+..|+|++ .++++...++.|..||..+++.. .+ .....+.+++++++|+++++ .. +.  |+.++..+.
T Consensus        10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~~~~~~~~i~~~~dG~l~v~-~~-~~--l~~~d~~~g   83 (297)
T 3g4e_A           10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV-TMDAPVSSVALRQSGGYVAT-IG-TK--FCALNWKEQ   83 (297)
T ss_dssp             CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE-ECSSCEEEEEEBTTSSEEEE-ET-TE--EEEEETTTT
T ss_pred             cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE-eCCCceEEEEECCCCCEEEE-EC-Ce--EEEEECCCC
Confidence            344456788999965 45566667889999999887653 33 34567899999999995554 43 33  889998876


Q ss_pred             eeEeeeCc----CCCceEEEEEccCCCEEEEEeC-----------CCcEEEEECCCceEEeeccCCCeeEEEEcCCCCEE
Q 042434          344 EIKAWRGT----RIPKVLDLAVTPDGENLISVLS-----------DKDIRILNLGTYAERVISEEHPITSLSVSVDCKNF  408 (517)
Q Consensus       344 ~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l  408 (517)
                      ....+...    ....+.+++++|+|+.+++...           .+.|..+|.................++|+|+++.+
T Consensus        84 ~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~l  163 (297)
T 3g4e_A           84 SAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIF  163 (297)
T ss_dssp             EEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEE
T ss_pred             cEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEE
Confidence            65544322    2235788999999996665432           23455555443223333444557899999999977


Q ss_pred             EE-EeCCCeEEEEEcC--CCCcc-ceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCe
Q 042434          409 IV-NLNSQEIHMWDVA--GKWEK-PFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTV  484 (517)
Q Consensus       409 ~~-~~~d~~i~~~d~~--~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v  484 (517)
                      ++ .+.++.|..||+.  ++... ...+............+.++++|++.++...++.|..||..+|+.+..+..+...+
T Consensus       164 yv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~  243 (297)
T 3g4e_A          164 YYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKT  243 (297)
T ss_dssp             EEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBE
T ss_pred             EEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCc
Confidence            55 4557899999973  33111 11111111111123445558899888887778899999999999999998887889


Q ss_pred             eEEEec-CCCCcEEEEeeC
Q 042434          485 NCVSWN-PKRPKMLASASD  502 (517)
Q Consensus       485 ~~v~~~-~~~~~~l~s~~~  502 (517)
                      ++++|. |++..++++...
T Consensus       244 t~~~f~g~d~~~L~vt~~~  262 (297)
T 3g4e_A          244 TSCCFGGKNYSEMYVTCAR  262 (297)
T ss_dssp             EEEEEESGGGCEEEEEEBC
T ss_pred             eEEEEeCCCCCEEEEEcCC
Confidence            999998 887556666554

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.58  E-value=2.1e-13  Score=142.28  Aligned_cols=243  Identities=16%  Similarity=0.109  Sum_probs=156.5

Q ss_pred             cccCcEEEEEECCCCCEEEEeeCC-----CcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCe----
Q 042434          220 EHKNEVWFVQFSNNGEYLASSSSD-----CSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEV----  290 (517)
Q Consensus       220 ~h~~~v~~~~~s~~~~~l~t~~~d-----g~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~----  290 (517)
                      +|...+..++|||||++||.++.+     ..|++||+.++.....  ..  +...+..++|+|| +.|+.++.++.    
T Consensus       160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~--~~--~~~~~~~~~wspD-~~l~~~~~~~~~~~~  234 (741)
T 1yr2_A          160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD--EL--KWVKFSGLAWLGN-DALLYSRFAEPKEGQ  234 (741)
T ss_dssp             ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE--EE--EEEESCCCEESTT-SEEEEEECCCC----
T ss_pred             CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc--cC--CCceeccEEEECC-CEEEEEEecCccccc
Confidence            344578899999999999987653     3599999987754321  11  1112357899999 99988877654    


Q ss_pred             ----------EEEEECCCCcE--EEEeC--CCCCceEEEEEeCCCCeEEEeeCCC---ceeEEEEeCCCC--e-eEeeeC
Q 042434          291 ----------LKLWDVETGIC--KHTFG--DHGFIVSSCAWFPDSKRLVCGSSDT---EKGIFMCDCDGN--E-IKAWRG  350 (517)
Q Consensus       291 ----------i~iwd~~~~~~--~~~~~--~~~~~v~~i~~~~~~~~l~~~~~d~---~v~i~~~~~~~~--~-~~~~~~  350 (517)
                                |++|++.++..  ...+.  .+...+..+.|+|||++|+..+.++   ...+++|+..+.  . ...+..
T Consensus       235 ~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~  314 (741)
T 1yr2_A          235 AFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIP  314 (741)
T ss_dssp             ----CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEEC
T ss_pred             ccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecC
Confidence                      89999987752  23333  3334588999999999988877653   345899988765  4 455544


Q ss_pred             cCCCceEEEEEccCCCEEEEEeCC----CcEEEEECCCc--e-EEeec-cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEc
Q 042434          351 TRIPKVLDLAVTPDGENLISVLSD----KDIRILNLGTY--A-ERVIS-EEHPITSLSVSVDCKNFIVNLNSQEIHMWDV  422 (517)
Q Consensus       351 ~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~--~-~~~~~-~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~  422 (517)
                      ... .+... ++|+|+.++..+.+    +.|.+||+.+.  . ..... ....+..++++ ++..+++...++..++|.+
T Consensus       315 ~~~-~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~  391 (741)
T 1yr2_A          315 DLK-AQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAF  391 (741)
T ss_dssp             SSS-SCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEE
T ss_pred             CCC-ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEE
Confidence            443 33333 34899988887764    45999999874  3 23333 33345567776 5556777777887776655


Q ss_pred             CCCCccceEEeCcccCceEEEeecCCCCCcEEE----EecCCCcEEEEecCCCc
Q 042434          423 AGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIA----SGSENSQIYIWNRRNSK  472 (517)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~----~~~~dg~i~iwd~~~~~  472 (517)
                      .........+....  ...+....++|++..++    +....++|+.||+.+++
T Consensus       392 ~~~g~~~~~l~~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          392 DLDGKPAGAVSLPG--IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             ETTSCEEEECBCSS--SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             eCCCCceeeccCCC--CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            32112333333211  12344555688887665    23345789999998876

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.57  E-value=1.6e-12  Score=125.02  Aligned_cols=237  Identities=12%  Similarity=0.011  Sum_probs=165.6

Q ss_pred             CCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCee-E
Q 042434          268 NPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEI-K  346 (517)
Q Consensus       268 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~-~  346 (517)
                      .....++|+++++++++...++.|++||..++........... .. ++|+++++.++++..++...|+.++..+... .
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~  208 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT  208 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence            4688999999999778877789999999988876655544333 33 9999999999998887644599998875432 2


Q ss_pred             ee---eCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceEEee------ccCCCe--eEEEEcCC-CCEEEEEeCC
Q 042434          347 AW---RGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVI------SEEHPI--TSLSVSVD-CKNFIVNLNS  414 (517)
Q Consensus       347 ~~---~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~------~~~~~i--~~~~~s~~-~~~l~~~~~d  414 (517)
                      ..   .......+.+++++|++..|+++..++.|+.||..+......      ......  ..++|+|+ +..+++...+
T Consensus       209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~  288 (409)
T 3hrp_A          209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL  288 (409)
T ss_dssp             EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred             EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence            22   121334678899999656666677888999999987663322      111111  39999996 5555555668


Q ss_pred             CeEEEEEcCCCCccceEEeCcc------------cCceEEEeecCCCCCcEEEEec-CCCcEEEEecCCCceeEEecCC-
Q 042434          415 QEIHMWDVAGKWEKPFKYTGHS------------QNKYVIRSCFGGLDGTFIASGS-ENSQIYIWNRRNSKPIEILSGH-  480 (517)
Q Consensus       415 ~~i~~~d~~~~~~~~~~~~~~~------------~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~h-  480 (517)
                      +.|+.|+....   ...+.++.            ........++++++|+++++-+ .++.|+.|+..++.. .++.++ 
T Consensus       289 ~~I~~~~~~g~---~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~  364 (409)
T 3hrp_A          289 SSVYKITPDGE---CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQV  364 (409)
T ss_dssp             TEEEEECTTCC---EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEECT
T ss_pred             CEEEEEecCCC---EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCCC
Confidence            89999997653   22222221            0011134455689999888877 889999999877764 344333 


Q ss_pred             --------------CCCeeEEEecCCCCcEEEEeeCCCcEEEeCC
Q 042434          481 --------------SMTVNCVSWNPKRPKMLASASDDHTIRIWGP  511 (517)
Q Consensus       481 --------------~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~  511 (517)
                                    -....++++++++ .++++-..++.|+.+++
T Consensus       365 ~~~g~~~g~~~~~~~~~P~giavd~~g-~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          365 DVASQIDGTPLEATFNYPYDICYDGEG-GYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             TCBSCCCBSTTTCCBSSEEEEEECSSS-EEEEEESTTCEEEEEEE
T ss_pred             CCCCcCCCChhceEeCCceEEEEcCCC-CEEEEECCCCeEEEEEe
Confidence                          2458899999998 78888888889988765

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.57  E-value=2e-11  Score=115.61  Aligned_cols=259  Identities=8%  Similarity=-0.027  Sum_probs=166.4

Q ss_pred             ccccCCCcccEEEeccccCcEEEEEECCCCCEEEEee----------CCCcEEEEEecCCCeeeEEEEe-cc---CCCCE
Q 042434          205 CGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSS----------SDCSAIIWKVLEDSKLTLKHTL-RS---HQNPV  270 (517)
Q Consensus       205 ~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~----------~dg~i~iw~~~~~~~~~~~~~~-~~---h~~~v  270 (517)
                      ..++....+.+..+.....+  .+++||||++++.+.          .++.|.+||..+......+..- ..   +....
T Consensus        50 ~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p  127 (373)
T 2mad_H           50 WVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYS  127 (373)
T ss_pred             EEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCc
Confidence            44555556666666654444  999999999998875          3678999999655332222110 00   01234


Q ss_pred             EEEEECCCCCeEEEEeC--CCeEEEEECCCCcEEEE-eCCCCCceEEEEEeCCC-CeEEEeeCCCceeEEEEeCCCCeeE
Q 042434          271 SFVAWSPDDTKLLTCGN--AEVLKLWDVETGICKHT-FGDHGFIVSSCAWFPDS-KRLVCGSSDTEKGIFMCDCDGNEIK  346 (517)
Q Consensus       271 ~~l~~s~~~~~l~s~~~--dg~i~iwd~~~~~~~~~-~~~~~~~v~~i~~~~~~-~~l~~~~~d~~v~i~~~~~~~~~~~  346 (517)
                      ..+.|+|||++|+++..  ++.|.++| .+++.+.. +....    ++.+.|++ +.+++.+.||.  +..++..++...
T Consensus       128 ~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~--~~~vd~~g~~~~  200 (373)
T 2mad_H          128 WMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGG--LAKTDHAGGAAG  200 (373)
T ss_pred             cceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCC--EEEEECCCcEEE
Confidence            58999999999998874  47899999 99998877 64322    24455554 45566677887  666666333331


Q ss_pred             eee-----CcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceEE---eec-----------cCCCeeEEEEcCCCCE
Q 042434          347 AWR-----GTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAER---VIS-----------EEHPITSLSVSVDCKN  407 (517)
Q Consensus       347 ~~~-----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~-----------~~~~i~~~~~s~~~~~  407 (517)
                      ...     ...........+.+++..++..+..+.+.+.|+.+....   ...           .......+.++|+++.
T Consensus       201 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~  280 (373)
T 2mad_H          201 AGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDG  280 (373)
T ss_pred             EEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCE
Confidence            211     111111233456676666555567889999998754311   110           0122344789999998


Q ss_pred             EEEEeC----------CCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCc-EEEEec-CCCcEEEEecCCCceeE
Q 042434          408 FIVNLN----------SQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGT-FIASGS-ENSQIYIWNRRNSKPIE  475 (517)
Q Consensus       408 l~~~~~----------d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~-~dg~i~iwd~~~~~~~~  475 (517)
                      ++++..          ++.|.++|..+. +.+..+.....    ...+.++|||+ .++++. .++.|.+||..+++.+.
T Consensus       281 lyV~~~~~~~~~~~~~~~~V~VID~~t~-~vv~~i~~g~~----p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~  355 (373)
T 2mad_H          281 IYLLTSEQSAWKLHAAAKEVTSVTGLVG-QTSSQISLGHD----VDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQ  355 (373)
T ss_pred             EEEEeccCCcccccCCCCeEEEEECCCC-EEEEEEECCCC----cCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEe
Confidence            888653          357999999876 44445432221    33445599999 777777 58999999999999988


Q ss_pred             Ee
Q 042434          476 IL  477 (517)
Q Consensus       476 ~~  477 (517)
                      ++
T Consensus       356 ~i  357 (373)
T 2mad_H          356 ST  357 (373)
T ss_pred             ee
Confidence            84

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.55  E-value=1.7e-12  Score=123.66  Aligned_cols=271  Identities=10%  Similarity=0.077  Sum_probs=177.6

Q ss_pred             CCCEEEEeeC-C----CcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEe----------CCCeEEEEECC
Q 042434          233 NGEYLASSSS-D----CSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCG----------NAEVLKLWDVE  297 (517)
Q Consensus       233 ~~~~l~t~~~-d----g~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~----------~dg~i~iwd~~  297 (517)
                      +++.+++... +    +.|.++|..+.   +.+.++.....+  .++++||+++++++.          .++.|.++|..
T Consensus        83 ~~~~vyV~n~~~~~~~~~VsVID~~t~---~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~  157 (426)
T 3c75_H           83 DARRVYIQDPAHFAAITQQFVIDGSTG---RILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPV  157 (426)
T ss_dssp             CTTEEEEEECTTTCSSEEEEEEETTTT---EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred             CCCEEEEECCCcCCCCCeEEEEECCCC---EEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECC
Confidence            5554444433 2    68999999766   444555544455  899999999988876          36789999999


Q ss_pred             CCcEEEEeCCC-------CCceEEEEEeCCCCeEEEeeC--CCceeEEEEeCCCCeeE-eeeCcCCCceEEEEEccCC-C
Q 042434          298 TGICKHTFGDH-------GFIVSSCAWFPDSKRLVCGSS--DTEKGIFMCDCDGNEIK-AWRGTRIPKVLDLAVTPDG-E  366 (517)
Q Consensus       298 ~~~~~~~~~~~-------~~~v~~i~~~~~~~~l~~~~~--d~~v~i~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~-~  366 (517)
                      +++.+..+.-.       ......+.++|||++++++..  ++.  |.++|.....+. .+....   .  ....|++ .
T Consensus       158 t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~--VsVID~~t~kvv~~I~v~g---~--~~~~p~g~~  230 (426)
T 3c75_H          158 TFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA--VGVVDLEGKTFDRMLDVPD---C--YHIFPASPT  230 (426)
T ss_dssp             TCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE--EEEEETTTTEEEEEEECCS---E--EEEEEEETT
T ss_pred             CCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe--EEEEECCCCeEEEEEEcCC---c--eeeccCCCc
Confidence            99988876421       233567899999999999875  355  888899875553 333322   1  2233433 4


Q ss_pred             EEEEEeCCCcEEEEECCCceEEe-----ecc-CCC-eeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccc-eEEeCc---
Q 042434          367 NLISVLSDKDIRILNLGTYAERV-----ISE-EHP-ITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKP-FKYTGH---  435 (517)
Q Consensus       367 ~l~~~~~dg~i~i~d~~~~~~~~-----~~~-~~~-i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~---  435 (517)
                      .+++.+.||.+.+.+..+++...     +.. ..+ ...+.+.+++..++..+..+.+.+.|..+..... ..+...   
T Consensus       231 ~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~  310 (426)
T 3c75_H          231 VFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEA  310 (426)
T ss_dssp             EEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTT
T ss_pred             EEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccc
Confidence            56666777887777775444211     111 111 1245678999888888888999999986532111 111100   


Q ss_pred             c-cCceEE---EeecCCCCCcEEEEecC----------CCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEee
Q 042434          436 S-QNKYVI---RSCFGGLDGTFIASGSE----------NSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS  501 (517)
Q Consensus       436 ~-~~~~~i---~~~~~s~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~  501 (517)
                      . ......   ..+.++++++.+++...          ++.|.++|..+++.+.++... ....+++|+|++..+++++.
T Consensus       311 ~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n  389 (426)
T 3c75_H          311 ERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALS  389 (426)
T ss_dssp             TGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEE
T ss_pred             ccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEc
Confidence            0 000000   01234788887776542          357999999999999988742 35889999999942666666


Q ss_pred             -CCCcEEEeCCCCCCC
Q 042434          502 -DDHTIRIWGPCQSSE  516 (517)
Q Consensus       502 -~dg~v~iw~~~~~~~  516 (517)
                       .++.|.++|+.+.+.
T Consensus       390 ~~s~~VsVID~~t~kv  405 (426)
T 3c75_H          390 AGTQTLHIYDAATGEE  405 (426)
T ss_dssp             TTTTEEEEEETTTCCE
T ss_pred             CCCCeEEEEECCCCCE
Confidence             699999999998764

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.54  E-value=8.9e-12  Score=119.84  Aligned_cols=238  Identities=11%  Similarity=0.011  Sum_probs=159.5

Q ss_pred             cCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCC--eEEEEECCCC
Q 042434          222 KNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAE--VLKLWDVETG  299 (517)
Q Consensus       222 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg--~i~iwd~~~~  299 (517)
                      -.....++|+++|+++++...++.|++||..++..   ...... ..... ++|+|+++.|+++..++  .|.+|+..++
T Consensus       130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~---~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~  204 (409)
T 3hrp_A          130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKV---TTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASG  204 (409)
T ss_dssp             CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEE---EEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGT
T ss_pred             cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEE---EEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCC
Confidence            35788999999999888877789999999865422   222222 23334 99999999999888766  7999998776


Q ss_pred             cEEEEe----CCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEee----eCcCCCce-E-EEEEccC-CCEE
Q 042434          300 ICKHTF----GDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAW----RGTRIPKV-L-DLAVTPD-GENL  368 (517)
Q Consensus       300 ~~~~~~----~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~----~~~~~~~i-~-~~~~~~~-~~~l  368 (517)
                      .....+    ......+.+++++|++..|+++..++.  |+.|+..+.....+    ........ . .++|+|+ +..+
T Consensus       205 ~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~--I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~ly  282 (409)
T 3hrp_A          205 WAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKN--FGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFY  282 (409)
T ss_dssp             TCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCE--EEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEE
T ss_pred             ceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCc--EEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEE
Confidence            554444    224566788999996556666666666  99999886655444    21111112 2 8999995 5555


Q ss_pred             EEEeCCCcEEEEECCCceEEeecc---------------CCCeeEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCccceEE
Q 042434          369 ISVLSDKDIRILNLGTYAERVISE---------------EHPITSLSVSVDCKNFIVNL-NSQEIHMWDVAGKWEKPFKY  432 (517)
Q Consensus       369 ~~~~~dg~i~i~d~~~~~~~~~~~---------------~~~i~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~  432 (517)
                      ++-..++.|+.|+...........               -.....++++|+|+.+++-+ .++.|+.||+.++ . +..+
T Consensus       283 v~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G-~-v~~~  360 (409)
T 3hrp_A          283 MSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG-Y-VSTV  360 (409)
T ss_dssp             EEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT-E-EEEE
T ss_pred             EEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC-E-EEEE
Confidence            555667899999987644333222               13478999999999777777 8899999997654 2 3333


Q ss_pred             eCccc------------CceEEEeecCCCCCcEEEEecCCCcEEEEec
Q 042434          433 TGHSQ------------NKYVIRSCFGGLDGTFIASGSENSQIYIWNR  468 (517)
Q Consensus       433 ~~~~~------------~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~  468 (517)
                      .++..            .......++++++|.++++-..++.|+.+++
T Consensus       361 ~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          361 AGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             eCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            33210            0111334445777777777777777777664

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.54  E-value=7e-11  Score=108.76  Aligned_cols=237  Identities=11%  Similarity=0.002  Sum_probs=168.1

Q ss_pred             cCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEE-EeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCC
Q 042434          265 SHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKH-TFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGN  343 (517)
Q Consensus       265 ~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~  343 (517)
                      .....+.++++.++|+..++...++.|.+||.. ++... .+......+.++++.+++..+++...++.  |+.++..+.
T Consensus        17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~--v~~~d~~g~   93 (300)
T 2qc5_A           17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANK--IGKLSKKGG   93 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTE--EEEECTTSC
T ss_pred             CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCe--EEEECCCCC
Confidence            345678999999999988877778999999987 65443 22233467899999999987777666666  888888844


Q ss_pred             eeEeeeCc-CCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEe-e-ccCCCeeEEEEcCCCCEEEEEeCCCeEEE
Q 042434          344 EIKAWRGT-RIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERV-I-SEEHPITSLSVSVDCKNFIVNLNSQEIHM  419 (517)
Q Consensus       344 ~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~-~-~~~~~i~~~~~s~~~~~l~~~~~d~~i~~  419 (517)
                      . ..+... ....+.++++.++|+.+++...++.|..+|.. +. ... . .....+..+++.++++.+++...++.|..
T Consensus        94 ~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~  171 (300)
T 2qc5_A           94 F-TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGR  171 (300)
T ss_dssp             E-EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred             e-EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEE
Confidence            3 333321 23468899999999988877778899999987 44 222 1 23456889999999996666666889999


Q ss_pred             EEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEE-ecCCCCCeeEEEecCCCCcEEE
Q 042434          420 WDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEI-LSGHSMTVNCVSWNPKRPKMLA  498 (517)
Q Consensus       420 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~v~~~~~~~~~l~  498 (517)
                      ||.... ..  .+..... ......+.++++|++.++....+.|.+||. +++.... +..+...+.+++++++| .+++
T Consensus       172 ~~~~g~-~~--~~~~~~~-~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g-~l~v  245 (300)
T 2qc5_A          172 ITNTGK-LE--EYPLPTN-AAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNS-EIWF  245 (300)
T ss_dssp             ECTTCC-EE--EEECSST-TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTT-CEEE
T ss_pred             ECCCCc-EE--EeeCCCC-CCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCC-CEEE
Confidence            998332 22  2221111 112344455788988777777788999998 5554432 33455678999999998 6777


Q ss_pred             EeeCCCcEEEeCCC
Q 042434          499 SASDDHTIRIWGPC  512 (517)
Q Consensus       499 s~~~dg~v~iw~~~  512 (517)
                      +...++.|..|+..
T Consensus       246 ~~~~~~~i~~~~~~  259 (300)
T 2qc5_A          246 TEWGANQIGRITND  259 (300)
T ss_dssp             EETTTTEEEEECTT
T ss_pred             eccCCCeEEEECCC
Confidence            66667889999873

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.53  E-value=1.6e-11  Score=114.07  Aligned_cols=243  Identities=12%  Similarity=0.087  Sum_probs=160.9

Q ss_pred             ccccCcEEEEEECCCCCEEEE-------eeCCCcEEEEEecCCCeeeEEEE--eccCCCCEEEEEECCC-CCeEEEEeCC
Q 042434          219 TEHKNEVWFVQFSNNGEYLAS-------SSSDCSAIIWKVLEDSKLTLKHT--LRSHQNPVSFVAWSPD-DTKLLTCGNA  288 (517)
Q Consensus       219 ~~h~~~v~~~~~s~~~~~l~t-------~~~dg~i~iw~~~~~~~~~~~~~--~~~h~~~v~~l~~s~~-~~~l~s~~~d  288 (517)
                      ...-....+++|+++|.++++       +..++.|.+|+..++.. .....  ..++...+.+++++++ ++++++. ..
T Consensus        14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~-~~   91 (314)
T 1pjx_A           14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKK-TVICKPEVNGYGGIPAGCQCDRDANQLFVAD-MR   91 (314)
T ss_dssp             ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCE-EEEECCEETTEECCEEEEEECSSSSEEEEEE-TT
T ss_pred             hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcE-EEEEecccCCCCCCCceEEEecCCCcEEEEE-CC
Confidence            344456689999999988888       67788999999765532 11110  0124467899999999 6655544 44


Q ss_pred             CeEEEEECCCCcEEEE-eCC----CCCceEEEEEeCCCCeEEEeeCCC-------------ceeEEEEeCCCCeeEeeeC
Q 042434          289 EVLKLWDVETGICKHT-FGD----HGFIVSSCAWFPDSKRLVCGSSDT-------------EKGIFMCDCDGNEIKAWRG  350 (517)
Q Consensus       289 g~i~iwd~~~~~~~~~-~~~----~~~~v~~i~~~~~~~~l~~~~~d~-------------~v~i~~~~~~~~~~~~~~~  350 (517)
                      +.|.+||.. ++.... ...    ....+.++++.++|+.+++...++             ...++.++..+........
T Consensus        92 ~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~  170 (314)
T 1pjx_A           92 LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTA  170 (314)
T ss_dssp             TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEE
T ss_pred             CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCCCCEEEeccC
Confidence            579999998 765443 221    124578999999998877766541             1348889877443322221


Q ss_pred             cCCCceEEEEEc----cCCCEEEEE-eCCCcEEEEECC-CceE----Eee--c-cC-CCeeEEEEcCCCCEEEEEeCCCe
Q 042434          351 TRIPKVLDLAVT----PDGENLISV-LSDKDIRILNLG-TYAE----RVI--S-EE-HPITSLSVSVDCKNFIVNLNSQE  416 (517)
Q Consensus       351 ~~~~~i~~~~~~----~~~~~l~~~-~~dg~i~i~d~~-~~~~----~~~--~-~~-~~i~~~~~s~~~~~l~~~~~d~~  416 (517)
                        ......++++    |+++.++++ ..++.|.+||.. ++..    ...  . +. ..+..++++++|+.+++...++.
T Consensus       171 --~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~  248 (314)
T 1pjx_A          171 --FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH  248 (314)
T ss_dssp             --ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE
T ss_pred             --CCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCE
Confidence              1246788999    999766555 467899999976 3321    111  1 11 45788999999988888878899


Q ss_pred             EEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEE-EEecCCCcEEEEecCC
Q 042434          417 IHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFI-ASGSENSQIYIWNRRN  470 (517)
Q Consensus       417 i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~~dg~i~iwd~~~  470 (517)
                      |..||..++ .....+..+...   +..+.++++|+.| ++...++.|..|++..
T Consensus       249 i~~~d~~~g-~~~~~~~~~~~~---~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          249 IEVFGPDGG-QPKMRIRCPFEK---PSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEECTTCB-SCSEEEECSSSC---EEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EEEEcCCCC-cEeEEEeCCCCC---ceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            999998744 333344333222   4445558999855 4555668899999764

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.51  E-value=5.6e-12  Score=116.62  Aligned_cols=233  Identities=14%  Similarity=0.130  Sum_probs=153.6

Q ss_pred             eccCCCCEEEEEECCCCC-eEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCC
Q 042434          263 LRSHQNPVSFVAWSPDDT-KLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD  341 (517)
Q Consensus       263 ~~~h~~~v~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~  341 (517)
                      +..+........|+|+++ ++++...++.|..|+. +++ ...+..+...+..++++++|+++++...++.  |+.++..
T Consensus        40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~--v~~~~~~  115 (305)
T 3dr2_A           40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRA--ITRSDAD  115 (305)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTE--EEEECTT
T ss_pred             EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCE--EEEECCC
Confidence            333455678899999998 5667777889999998 454 3445456677899999999997666555555  8888877


Q ss_pred             CCeeEeeeC----cCCCceEEEEEccCCCEEEE----EeC-------------CCcEEEEECCCce-EEeeccCCCeeEE
Q 042434          342 GNEIKAWRG----TRIPKVLDLAVTPDGENLIS----VLS-------------DKDIRILNLGTYA-ERVISEEHPITSL  399 (517)
Q Consensus       342 ~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~----~~~-------------dg~i~i~d~~~~~-~~~~~~~~~i~~~  399 (517)
                      +. ...+..    .....+.+++++++|+..++    |..             .+.|..||..+++ .... .......+
T Consensus       116 g~-~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl  193 (305)
T 3dr2_A          116 GQ-AHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGL  193 (305)
T ss_dssp             SC-EEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEE
T ss_pred             CC-EEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcce
Confidence            54 332221    11234678999999998876    332             2568888876665 2222 44567889


Q ss_pred             EEcCCCCEEEEEeCC------CeEEEEEcCCCCcc-ceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCc
Q 042434          400 SVSVDCKNFIVNLNS------QEIHMWDVAGKWEK-PFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSK  472 (517)
Q Consensus       400 ~~s~~~~~l~~~~~d------~~i~~~d~~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  472 (517)
                      +|+|+++.++++...      +.|..|++...... ...+.....  .....+.++++|++ .+++.+| |.+|+. .++
T Consensus       194 ~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~--~~pdgi~~d~~G~l-wv~~~~g-v~~~~~-~g~  268 (305)
T 3dr2_A          194 AFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPD--GLPDGFCVDRGGWL-WSSSGTG-VCVFDS-DGQ  268 (305)
T ss_dssp             EECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSS--SCCCSEEECTTSCE-EECCSSE-EEEECT-TSC
T ss_pred             EEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCC--CCCCeEEECCCCCE-EEecCCc-EEEECC-CCC
Confidence            999999988877665      78999998654200 011111000  01123344788884 4444554 999997 577


Q ss_pred             eeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEE
Q 042434          473 PIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRI  508 (517)
Q Consensus       473 ~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~i  508 (517)
                      .+..+..+. .+.+++|.|++ ..|+.++.++..++
T Consensus       269 ~~~~~~~~~-~~~~~~f~~d~-~~L~it~~~~l~~~  302 (305)
T 3dr2_A          269 LLGHIPTPG-TASNCTFDQAQ-QRLFITGGPCLWML  302 (305)
T ss_dssp             EEEEEECSS-CCCEEEECTTS-CEEEEEETTEEEEE
T ss_pred             EEEEEECCC-ceeEEEEeCCC-CEEEEEcCCeEEEE
Confidence            777777555 58999999988 56666666654443

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.50  E-value=8e-12  Score=118.98  Aligned_cols=261  Identities=12%  Similarity=0.056  Sum_probs=170.8

Q ss_pred             CcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEee----------CCCcEEEEEecCCCeeeEEEEec--c---CC
Q 042434          203 HCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSS----------SDCSAIIWKVLEDSKLTLKHTLR--S---HQ  267 (517)
Q Consensus       203 ~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~----------~dg~i~iw~~~~~~~~~~~~~~~--~---h~  267 (517)
                      ....+|....+.+..+..-..+  .+++||||++|+++.          .++.|.++|..+......+. +.  .   ..
T Consensus       100 ~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~-v~g~~r~~~g  176 (426)
T 3c75_H          100 QQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIE-LPDAPRFLVG  176 (426)
T ss_dssp             EEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBS
T ss_pred             eEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEE-CCCccccccC
Confidence            4445666677777777755556  899999999888775          36789999997664333222 11  0   01


Q ss_pred             CCEEEEEECCCCCeEEEEeC--CCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCC-CeEEEeeCCCceeEEEEeCCCCe
Q 042434          268 NPVSFVAWSPDDTKLLTCGN--AEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDS-KRLVCGSSDTEKGIFMCDCDGNE  344 (517)
Q Consensus       268 ~~v~~l~~s~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~d~~v~i~~~~~~~~~  344 (517)
                      .....+.|+|||++++++..  ++.|.+.|+.+++.+.++.....    ....|++ ..+++.+.||.  +...+.....
T Consensus       177 ~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~--~~~V~~~~~~  250 (426)
T 3c75_H          177 TYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGS--LARVDFADGE  250 (426)
T ss_dssp             CCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSS--EEEEECCTTC
T ss_pred             CCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCC--EEEEECCCCc
Confidence            23467899999999998864  57999999999999888754321    2223332 44455556665  4444443222


Q ss_pred             eE-----eeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceEEeec--------------cCCCeeEEEEcCCC
Q 042434          345 IK-----AWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVIS--------------EEHPITSLSVSVDC  405 (517)
Q Consensus       345 ~~-----~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--------------~~~~i~~~~~s~~~  405 (517)
                      +.     .+..........+.+.+++..++..+..+.+.+.|..+.......              .......++++|++
T Consensus       251 v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg  330 (426)
T 3c75_H          251 TKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQS  330 (426)
T ss_dssp             CEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGG
T ss_pred             EEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCC
Confidence            21     111111111234567899998888888899999998765421111              01122337899999


Q ss_pred             CEEEEEeC----------CCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCc-EEEEec-CCCcEEEEecCCCce
Q 042434          406 KNFIVNLN----------SQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGT-FIASGS-ENSQIYIWNRRNSKP  473 (517)
Q Consensus       406 ~~l~~~~~----------d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~-~dg~i~iwd~~~~~~  473 (517)
                      +.+++...          ++.|.++|..+. +.+..+....    ....+.++|||+ ++++.. .++.|.++|..+++.
T Consensus       331 ~rlyVa~~~~~~gthk~~s~~VsVID~~T~-kvv~~I~vg~----~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kv  405 (426)
T 3c75_H          331 DRIYLLVDQRDEWKHKAASRFVVVLNAETG-ERINKIELGH----EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEE  405 (426)
T ss_dssp             TEEEEEEEECCTTCTTSCEEEEEEEETTTC-CEEEEEEEEE----EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred             CEEEEEecccccccccCCCCEEEEEECCCC-eEEEEEECCC----CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCE
Confidence            88777643          357999999887 5554443222    133445589999 888887 589999999999999


Q ss_pred             eEEe
Q 042434          474 IEIL  477 (517)
Q Consensus       474 ~~~~  477 (517)
                      +.++
T Consensus       406 v~tI  409 (426)
T 3c75_H          406 LRSV  409 (426)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9887

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.50  E-value=5.3e-11  Score=111.04  Aligned_cols=225  Identities=13%  Similarity=0.114  Sum_probs=150.3

Q ss_pred             EEEEEECCCC-CeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEee
Q 042434          270 VSFVAWSPDD-TKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAW  348 (517)
Q Consensus       270 v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~  348 (517)
                      ..+..|+|++ ..+++...++.|..||..+++.. .+. ....+.+++|+++|+++++. .++   ++.|+..+..+..+
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~g---l~~~d~~~g~~~~~  124 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DDG---LFLRDTATGVLTLH  124 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TTE---EEEEETTTCCEEEE
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CCC---EEEEECCCCcEEEE
Confidence            4667899975 45566667889999999887643 332 34679999999999877654 443   88999876655444


Q ss_pred             eCc----CCCceEEEEEccCCCEEEEEeC------CCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEE-eCCCe
Q 042434          349 RGT----RIPKVLDLAVTPDGENLISVLS------DKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVN-LNSQE  416 (517)
Q Consensus       349 ~~~----~~~~i~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~-~~d~~  416 (517)
                      ...    ....+.++.++|+|+.+++...      .+.|..+|  +++ ............++|+|+++.++++ +.++.
T Consensus       125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~  202 (326)
T 2ghs_A          125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNR  202 (326)
T ss_dssp             ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred             eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCE
Confidence            322    1235889999999997665442      25677777  344 2222333456789999999877655 45789


Q ss_pred             EEEEEcC--CC-Cc-cceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEec-C
Q 042434          417 IHMWDVA--GK-WE-KPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWN-P  491 (517)
Q Consensus       417 i~~~d~~--~~-~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~-~  491 (517)
                      |.+||+.  ++ .. ....+............+.++++|++.++...++.|.+||. +++.+..+..+...+++++|. |
T Consensus       203 I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~  281 (326)
T 2ghs_A          203 LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGP  281 (326)
T ss_dssp             EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEEST
T ss_pred             EEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecC
Confidence            9999985  33 11 11122111111122344555889987777766788999998 677778887777789999998 8


Q ss_pred             CCCcEEEEeeCC
Q 042434          492 KRPKMLASASDD  503 (517)
Q Consensus       492 ~~~~~l~s~~~d  503 (517)
                      ++..++++...+
T Consensus       282 d~~~L~vt~~~~  293 (326)
T 2ghs_A          282 DASRLLVTSARE  293 (326)
T ss_dssp             TSCEEEEEEBCT
T ss_pred             CCCEEEEEecCC
Confidence            874455555544

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.47  E-value=3e-12  Score=119.93  Aligned_cols=252  Identities=6%  Similarity=-0.071  Sum_probs=165.8

Q ss_pred             cEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEe----------CCCeEEEEECCCCcEEEEeCCC------
Q 042434          245 SAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCG----------NAEVLKLWDVETGICKHTFGDH------  308 (517)
Q Consensus       245 ~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~------  308 (517)
                      +|.++|..+.   +.+.++.....+  .+.++||+++++++.          .++.|.+||..+++.+.++...      
T Consensus        47 ~vsvID~~t~---~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~  121 (368)
T 1mda_H           47 ENWVSCAGCG---VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFS  121 (368)
T ss_dssp             EEEEEETTTT---EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCC
T ss_pred             eEEEEECCCC---eEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccc
Confidence            7889998665   445555545556  799999999998886          3679999999999999887533      


Q ss_pred             -CCceEEEEEeCCCCeEEEeeCC--CceeEEE--EeCCCCeeEeeeCcCCCceEEEEEccCCC-EEEEEeCCCcEEEEEC
Q 042434          309 -GFIVSSCAWFPDSKRLVCGSSD--TEKGIFM--CDCDGNEIKAWRGTRIPKVLDLAVTPDGE-NLISVLSDKDIRILNL  382 (517)
Q Consensus       309 -~~~v~~i~~~~~~~~l~~~~~d--~~v~i~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~  382 (517)
                       ......++++|||++++++...  ..  +.+  +|..+  +..+....  .   ..+.|+++ .+++.+.||.+.+.|+
T Consensus       122 ~g~~P~~ia~SpDGk~lyVan~~~~~~--v~V~~iD~~t--v~~i~v~~--~---~~~~p~g~~~~~~~~~dg~~~~vd~  192 (368)
T 1mda_H          122 VGPRVHIIGNCASSACLLFFLFGSSAA--AGLSVPGASD--DQLTKSAS--C---FHIHPGAAATHYLGSCPASLAASDL  192 (368)
T ss_dssp             BSCCTTSEEECTTSSCEEEEECSSSCE--EEEEETTTEE--EEEEECSS--C---CCCEEEETTEEECCCCTTSCEEEEC
T ss_pred             cCCCcceEEEcCCCCEEEEEccCCCCe--EEEEEEchhh--ceEEECCC--c---eEEccCCCeEEEEEcCCCCEEEEEC
Confidence             1235679999999999998753  44  555  77665  33333221  1   11234443 4556677888888888


Q ss_pred             CC-----ceEEe-----e-ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcc-ceEEeCc----ccCceEE---E
Q 042434          383 GT-----YAERV-----I-SEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEK-PFKYTGH----SQNKYVI---R  443 (517)
Q Consensus       383 ~~-----~~~~~-----~-~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~----~~~~~~i---~  443 (517)
                      .+     ++...     . ....+.   . ++++..++..+. +.+.+.|..+.... ...+...    .......   .
T Consensus       193 ~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~  267 (368)
T 1mda_H          193 AAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQ  267 (368)
T ss_dssp             CSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSS
T ss_pred             ccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcce
Confidence            76     33110     1 112222   3 666666666666 99999998643111 1111100    0000100   1


Q ss_pred             eecCCCCCcEEEEecC---------CCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEee-CCCcEEEeCCCC
Q 042434          444 SCFGGLDGTFIASGSE---------NSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS-DDHTIRIWGPCQ  513 (517)
Q Consensus       444 ~~~~s~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~-~dg~v~iw~~~~  513 (517)
                      .+.+++|++.++++..         ++.+.++|+.+++.+.++.... ...+++|+|++..++++.. .++.|.++|+.+
T Consensus       268 ~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t  346 (368)
T 1mda_H          268 MVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAAS  346 (368)
T ss_dssp             CEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred             eeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCC
Confidence            1235889888876543         2356699999999998887543 6889999999965788888 699999999998


Q ss_pred             CCC
Q 042434          514 SSE  516 (517)
Q Consensus       514 ~~~  516 (517)
                      ++.
T Consensus       347 ~kv  349 (368)
T 1mda_H          347 DQD  349 (368)
T ss_dssp             CEE
T ss_pred             CcE
Confidence            763

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.45  E-value=8.2e-12  Score=129.07  Aligned_cols=241  Identities=15%  Similarity=0.178  Sum_probs=156.2

Q ss_pred             cccCcEEEEEECCCCCEEEEe-----eCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCC-----
Q 042434          220 EHKNEVWFVQFSNNGEYLASS-----SSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAE-----  289 (517)
Q Consensus       220 ~h~~~v~~~~~s~~~~~l~t~-----~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg-----  289 (517)
                      +|...+..++|||||++||.+     +....|++||+.++.....  .+...  ....++|+ |++.|+.++.+.     
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~~  200 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--PLKDV--KFSGISWL-GNEGFFYSSYDKPDGSE  200 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--EEEEE--ESCCCEEE-TTTEEEEEESSCCC---
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--ccCCc--eeccEEEe-CCCEEEEEEecCccccc
Confidence            466789999999999999854     2335799999987754322  22111  12467899 999999888774     


Q ss_pred             --------eEEEEECCCCcE--EEEe--CC-CCCceEEEEEeCCCCeEEEeeC-CCc-eeEEEEeCCCC--eeEeeeCcC
Q 042434          290 --------VLKLWDVETGIC--KHTF--GD-HGFIVSSCAWFPDSKRLVCGSS-DTE-KGIFMCDCDGN--EIKAWRGTR  352 (517)
Q Consensus       290 --------~i~iwd~~~~~~--~~~~--~~-~~~~v~~i~~~~~~~~l~~~~~-d~~-v~i~~~~~~~~--~~~~~~~~~  352 (517)
                              .|++|++.++..  ...+  .. +...+.++.|+|||++|+.... ++. -.+|+++..+.  ....+....
T Consensus       201 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~  280 (693)
T 3iuj_A          201 LSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDL  280 (693)
T ss_dssp             ----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSS
T ss_pred             ccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCC
Confidence                    399999987642  2233  33 4456788999999998866543 222 24999998654  444444443


Q ss_pred             CCceEEEEEccCCCEEEEEeC----CCcEEEEECCCce----EEeeccCCCeeEEEEcCCCCEEEEEeCCC---eEEEEE
Q 042434          353 IPKVLDLAVTPDGENLISVLS----DKDIRILNLGTYA----ERVISEEHPITSLSVSVDCKNFIVNLNSQ---EIHMWD  421 (517)
Q Consensus       353 ~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~~d~---~i~~~d  421 (517)
                      . ..... ++++|..++..+.    .+.|..+|+.+..    .....+...+.  .|+++++.++....++   .|++||
T Consensus       281 ~-~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d  356 (693)
T 3iuj_A          281 D-ADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFD  356 (693)
T ss_dssp             S-SCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEEC
T ss_pred             C-ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEE
Confidence            2 33333 6677776655543    2579999998754    33444544444  8999999888776644   688999


Q ss_pred             cCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCC----CcEEEEecCCCce
Q 042434          422 VAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSEN----SQIYIWNRRNSKP  473 (517)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----g~i~iwd~~~~~~  473 (517)
                      +.+..  ...+....  ...+....+++++..++....+    ++|+.||+.+++.
T Consensus       357 ~~g~~--~~~l~~p~--~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~  408 (693)
T 3iuj_A          357 YEGKR--VREVALPG--LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI  408 (693)
T ss_dssp             TTSCE--EEEECCSS--SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred             CCCCe--eEEeecCC--CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence            87542  22222111  1124445557787766655444    7899999987763

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.45  E-value=1.5e-11  Score=127.15  Aligned_cols=241  Identities=12%  Similarity=0.101  Sum_probs=157.4

Q ss_pred             CCCCEEEEEECCCCCeEEEEe-----CCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCc--------
Q 042434          266 HQNPVSFVAWSPDDTKLLTCG-----NAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTE--------  332 (517)
Q Consensus       266 h~~~v~~l~~s~~~~~l~s~~-----~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~--------  332 (517)
                      |...+..++|||||++||.+.     ....|++||+.+|+.+... ........++|+ |++.|+.++.+..        
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~  204 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR  204 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence            556788999999999988532     2347999999999865531 111113567899 9999998887742        


Q ss_pred             ---eeEEEEeCCCCe---eEeeeCc--CCCceEEEEEccCCCEEEEEeC----CCcEEEEECCCce---EEeeccCCCee
Q 042434          333 ---KGIFMCDCDGNE---IKAWRGT--RIPKVLDLAVTPDGENLISVLS----DKDIRILNLGTYA---ERVISEEHPIT  397 (517)
Q Consensus       333 ---v~i~~~~~~~~~---~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~---~~~~~~~~~i~  397 (517)
                         -.|+.|+..+..   ...+...  +......+.++|||++++....    +..|+++|+.+..   ...........
T Consensus       205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~  284 (693)
T 3iuj_A          205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADV  284 (693)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCE
T ss_pred             CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceE
Confidence               448889887533   2222222  2234778999999998865443    2489999997763   33333444444


Q ss_pred             EEEEcCCCCEEEEEeC----CCeEEEEEcCCCCc-cceEEeCcccCceEEEeecCCCCCcEEEEecCC-C--cEEEEecC
Q 042434          398 SLSVSVDCKNFIVNLN----SQEIHMWDVAGKWE-KPFKYTGHSQNKYVIRSCFGGLDGTFIASGSEN-S--QIYIWNRR  469 (517)
Q Consensus       398 ~~~~s~~~~~l~~~~~----d~~i~~~d~~~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g--~i~iwd~~  469 (517)
                      .. ++++|+.++..+.    .+.|..+|+.+... ....+..+....  +   .+++++++|+....+ |  .|++||+.
T Consensus       285 ~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~--~---~~s~~g~~lv~~~~~~g~~~l~~~d~~  358 (693)
T 3iuj_A          285 SL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQV--L---TVHSGSGYLFAEYMVDATARVEQFDYE  358 (693)
T ss_dssp             EE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSC--E---EEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred             EE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCE--E---EEEEECCEEEEEEEECCeeEEEEEECC
Confidence            43 6777777666554    25799999876522 123455554432  2   347788877766554 3  68999987


Q ss_pred             CCceeEEec-CCCCCeeEEEecCCCCcEEEEeeCC---CcEEEeCCCCCC
Q 042434          470 NSKPIEILS-GHSMTVNCVSWNPKRPKMLASASDD---HTIRIWGPCQSS  515 (517)
Q Consensus       470 ~~~~~~~~~-~h~~~v~~v~~~~~~~~~l~s~~~d---g~v~iw~~~~~~  515 (517)
                      .+. ...+. .+.+.+..+.++|++..++++.+..   +.|..||+.+++
T Consensus       359 g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          359 GKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             SCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred             CCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence            544 44443 3456678888898885555555432   789999987764

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.45  E-value=2.5e-10  Score=105.05  Aligned_cols=229  Identities=11%  Similarity=0.013  Sum_probs=151.7

Q ss_pred             eccccCcEEEEEECCC-CCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEEC
Q 042434          218 LTEHKNEVWFVQFSNN-GEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDV  296 (517)
Q Consensus       218 l~~h~~~v~~~~~s~~-~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~  296 (517)
                      +..+..-.-+..|+|+ +.++++...++.|..||..++..    ..+ .....+.+++++++|+++++ . ++.|.+||.
T Consensus         8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~----~~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~   80 (297)
T 3g4e_A            8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV----QRV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNW   80 (297)
T ss_dssp             ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE----EEE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEET
T ss_pred             eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE----EEE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEEC
Confidence            4445556678899995 55666666788999999875432    122 24578999999999995554 3 568999999


Q ss_pred             CCCcEEEEeCC----CCCceEEEEEeCCCCeEEEeeCC---------CceeEEEEeCCCCeeEeeeCcCCCceEEEEEcc
Q 042434          297 ETGICKHTFGD----HGFIVSSCAWFPDSKRLVCGSSD---------TEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTP  363 (517)
Q Consensus       297 ~~~~~~~~~~~----~~~~v~~i~~~~~~~~l~~~~~d---------~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~  363 (517)
                      .+++.......    ....+..+++.|+|+++++....         ....++.++..+.........  .....++|+|
T Consensus        81 ~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~--~~pngi~~sp  158 (297)
T 3g4e_A           81 KEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQV--DISNGLDWSL  158 (297)
T ss_dssp             TTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEE--SBEEEEEECT
T ss_pred             CCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeecc--ccccceEEcC
Confidence            88865433321    23457889999999976654322         233588888775443332222  2567899999


Q ss_pred             CCCEEEE-EeCCCcEEEEECC--CceE----Eee---ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEe
Q 042434          364 DGENLIS-VLSDKDIRILNLG--TYAE----RVI---SEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYT  433 (517)
Q Consensus       364 ~~~~l~~-~~~dg~i~i~d~~--~~~~----~~~---~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~  433 (517)
                      +++.++. .+.++.|.+||+.  ++..    ...   .....+..++++++|+..++...++.|..||..++ .....+.
T Consensus       159 dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG-~~~~~i~  237 (297)
T 3g4e_A          159 DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG-KRLQTVK  237 (297)
T ss_dssp             TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC-CEEEEEE
T ss_pred             CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc-eEEEEEE
Confidence            9997654 4557889999873  3321    111   12346788999999988887778889999998755 4444444


Q ss_pred             CcccCceEEEeecCC-CCCcEEEEecC
Q 042434          434 GHSQNKYVIRSCFGG-LDGTFIASGSE  459 (517)
Q Consensus       434 ~~~~~~~~i~~~~~s-~~~~~l~~~~~  459 (517)
                      .....   +.+++|+ |+++.|++++.
T Consensus       238 ~p~~~---~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          238 LPVDK---TTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             CSSSB---EEEEEEESGGGCEEEEEEB
T ss_pred             CCCCC---ceEEEEeCCCCCEEEEEcC
Confidence            33222   3444454 77776655543

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.43  E-value=2.8e-12  Score=120.35  Aligned_cols=172  Identities=18%  Similarity=0.128  Sum_probs=132.9

Q ss_pred             cEEEEEECCCCCEEEEeeCCCcEEEEEecCCC--------eeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEE
Q 042434          224 EVWFVQFSNNGEYLASSSSDCSAIIWKVLEDS--------KLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWD  295 (517)
Q Consensus       224 ~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~--------~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd  295 (517)
                      .++.+++++...++++|+.++ +.+|++....        ....... ..+.. |+.++|  |+++|+++ .++.|++||
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~-~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWE-KEIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEE-EECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEE-eeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            688999999999999999985 6669874322        0122112 23566 999999  89999998 889999999


Q ss_pred             CCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCC
Q 042434          296 VETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDK  375 (517)
Q Consensus       296 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  375 (517)
                      +.+.........+...+.++.+.+.  .+++++.||.  +++|+.........    ...|.+++|+|+|  ++.|..||
T Consensus       113 v~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~--L~v~dl~~~~~~~~----~~~Vs~v~WSpkG--~~vg~~dg  182 (388)
T 1xip_A          113 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVND--LSALDLRTKSTKQL----AQNVTSFDVTNSQ--LAVLLKDR  182 (388)
T ss_dssp             SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSE--EEEEETTTCCEEEE----EESEEEEEECSSE--EEEEETTS
T ss_pred             chhhhccCccceeecceeeEEecCC--CEEEEECCCC--EEEEEccCCccccc----cCCceEEEEcCCc--eEEEEcCC
Confidence            9877666666677778888887765  3888999999  88999986554332    2379999999999  78899999


Q ss_pred             cEEEEECCCce---EEee----------ccCCCeeEEEEcCCCCEEEEE
Q 042434          376 DIRILNLGTYA---ERVI----------SEEHPITSLSVSVDCKNFIVN  411 (517)
Q Consensus       376 ~i~i~d~~~~~---~~~~----------~~~~~i~~~~~s~~~~~l~~~  411 (517)
                      .+++|+.....   ...+          .+...|.++.|.+++.++++-
T Consensus       183 ~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          183 SFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             CEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             cEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence            99999887766   2223          256789999999999888764

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.43  E-value=2.2e-11  Score=114.64  Aligned_cols=265  Identities=8%  Similarity=-0.046  Sum_probs=166.5

Q ss_pred             CcEEEEEECCCCCEEEEee--CCCcEEEEEecCCCeeeEEE----EeccCCCCEEEEEECCCCCeEEEEeC-----CCeE
Q 042434          223 NEVWFVQFSNNGEYLASSS--SDCSAIIWKVLEDSKLTLKH----TLRSHQNPVSFVAWSPDDTKLLTCGN-----AEVL  291 (517)
Q Consensus       223 ~~v~~~~~s~~~~~l~t~~--~dg~i~iw~~~~~~~~~~~~----~~~~h~~~v~~l~~s~~~~~l~s~~~-----dg~i  291 (517)
                      ..+..++++|+|+++++..  .++.++||.+.+ .......    ....|-..+..++++++++++++-..     ++.|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~-g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQ-DGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEET-TEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECC-CCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            7899999999999988864  234466777652 2221110    01134568999999999876665433     5789


Q ss_pred             EEEECCCCcEEEEeCCC------CCceEEEEEeCCCCeEEEee----CCCceeEEEEeCCCCeeEeeeCcCCCc-eEEEE
Q 042434          292 KLWDVETGICKHTFGDH------GFIVSSCAWFPDSKRLVCGS----SDTEKGIFMCDCDGNEIKAWRGTRIPK-VLDLA  360 (517)
Q Consensus       292 ~iwd~~~~~~~~~~~~~------~~~v~~i~~~~~~~~l~~~~----~d~~v~i~~~~~~~~~~~~~~~~~~~~-i~~~~  360 (517)
                      .+||+.+++.+..+...      ...+..+++++++..++.+.    .++.  |++|+..+.........+... .....
T Consensus        96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~--i~v~d~~~g~~~r~~~~~~~~~~~~~~  173 (343)
T 2qe8_A           96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAA--LIRVDLQTGLAARVLQGYPGIAPEDID  173 (343)
T ss_dssp             EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCE--EEEEETTTCCEEEECTTCTTTSCCSCC
T ss_pred             EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCe--EEEEECCCCCEEEEecCCCcccccccc
Confidence            99999999877666422      23568899998655554443    3455  889998755544433221100 00133


Q ss_pred             EccCCCEEEEEeCCCcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCC-eEEEEEcC---CCC----cc--ce
Q 042434          361 VTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQ-EIHMWDVA---GKW----EK--PF  430 (517)
Q Consensus       361 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~-~i~~~d~~---~~~----~~--~~  430 (517)
                      +.++|..+.+.+.++.+..|.            ..+..++++|+++.++++...+ .+..++..   ...    ..  ..
T Consensus       174 ~~~~g~~~~~~~~~g~~~~~~------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  241 (343)
T 2qe8_A          174 LVIDGVPVQIGQPDGTVIRPH------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKI  241 (343)
T ss_dssp             CEETTEECBEECTTSCEECCC------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTC
T ss_pred             eeECCEEEEeccCCCceecee------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcce
Confidence            445676666677777765553            2467899999999888887665 56555542   110    00  00


Q ss_pred             EEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecC-CCCCeeEEEecCCCCcEEEEeeCCCcE
Q 042434          431 KYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSG-HSMTVNCVSWNPKRPKMLASASDDHTI  506 (517)
Q Consensus       431 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~v~~~~~~~~~l~s~~~dg~v  506 (517)
                      ...++...   ...++++++|+++++...++.|.+||..+++....... +...+.+++|.+++ .++++.+..+.+
T Consensus       242 ~~~g~~g~---pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g-~l~v~~~~~~~~  314 (343)
T 2qe8_A          242 ERYSEKPI---CDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDG-YLYFDCNQLHHS  314 (343)
T ss_dssp             EEEEECCS---CSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTS-CEEEEECCGGGS
T ss_pred             EecccCCC---CceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCC-cEEEEeCccccc
Confidence            11111111   12234478999999999999999999866764333322 24568999999998 677777644433

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.42  E-value=8e-11  Score=108.81  Aligned_cols=239  Identities=10%  Similarity=0.035  Sum_probs=157.0

Q ss_pred             cccEEEeccccCcEEEEEECCCCC-EEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCe
Q 042434          212 TETVQILTEHKNEVWFVQFSNNGE-YLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEV  290 (517)
Q Consensus       212 ~~~~~~l~~h~~~v~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~  290 (517)
                      ...+..+..+........|+|+|+ +++++..++.|..|+.. +. .   ..+..+...+..++++++|+++++...++.
T Consensus        34 ~~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~---~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~  108 (305)
T 3dr2_A           34 DARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-V---DVLLDATAFTNGNAVDAQQRLVHCEHGRRA  108 (305)
T ss_dssp             TCCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-E---EEEEESCSCEEEEEECTTSCEEEEETTTTE
T ss_pred             CCceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-E---EEEeCCCCccceeeECCCCCEEEEECCCCE
Confidence            344555656667778899999998 56677778899999873 32 2   234446677999999999997776666688


Q ss_pred             EEEEECCCCcEEEEeCCC----CCceEEEEEeCCCCeEEE----eeCC-----------CceeEEEEeCCCCeeEeeeCc
Q 042434          291 LKLWDVETGICKHTFGDH----GFIVSSCAWFPDSKRLVC----GSSD-----------TEKGIFMCDCDGNEIKAWRGT  351 (517)
Q Consensus       291 i~iwd~~~~~~~~~~~~~----~~~v~~i~~~~~~~~l~~----~~~d-----------~~v~i~~~~~~~~~~~~~~~~  351 (517)
                      |.+|+.. ++........    ...+..+++.++|+.+++    |..+           +...|+.++..+..+....  
T Consensus       109 v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--  185 (305)
T 3dr2_A          109 ITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--  185 (305)
T ss_dssp             EEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--
T ss_pred             EEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--
Confidence            9999986 6543322111    234678999999998886    3321           1234999998654444433  


Q ss_pred             CCCceEEEEEccCCCEEEEEeCC------CcEEEEECCCce----EEe-eccCCCeeEEEEcCCCCEEEEEeCCCeEEEE
Q 042434          352 RIPKVLDLAVTPDGENLISVLSD------KDIRILNLGTYA----ERV-ISEEHPITSLSVSVDCKNFIVNLNSQEIHMW  420 (517)
Q Consensus       352 ~~~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~----~~~-~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~  420 (517)
                      .......++|+|+++.++++...      +.|.+||+....    ... .........++++++|+ +.+++. +.|.+|
T Consensus       186 ~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~-~gv~~~  263 (305)
T 3dr2_A          186 DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LWSSSG-TGVCVF  263 (305)
T ss_dssp             EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-EEECCS-SEEEEE
T ss_pred             cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-EEEecC-CcEEEE
Confidence            22357889999999988877665      789999986532    111 11233456789999998 444444 459999


Q ss_pred             EcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEe
Q 042434          421 DVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWN  467 (517)
Q Consensus       421 d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd  467 (517)
                      +..+.  ....+.....    +..+.++++++.|+.++.++ ++.++
T Consensus       264 ~~~g~--~~~~~~~~~~----~~~~~f~~d~~~L~it~~~~-l~~~~  303 (305)
T 3dr2_A          264 DSDGQ--LLGHIPTPGT----ASNCTFDQAQQRLFITGGPC-LWMLP  303 (305)
T ss_dssp             CTTSC--EEEEEECSSC----CCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred             CCCCC--EEEEEECCCc----eeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence            98543  3334433321    33344468888888777654 44333

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.36  E-value=2.3e-09  Score=99.92  Aligned_cols=222  Identities=13%  Similarity=0.026  Sum_probs=144.6

Q ss_pred             CcEEEEEECCCC-CEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcE
Q 042434          223 NEVWFVQFSNNG-EYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGIC  301 (517)
Q Consensus       223 ~~v~~~~~s~~~-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~  301 (517)
                      .-..+..|+|++ .++++...++.|..|+..++. ..   .+. ....+.+++|+|+|+++++. .+ .|.+||..+++.
T Consensus        49 ~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~-~~---~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~  121 (326)
T 2ghs_A           49 LLGEGPTFDPASGTAWWFNILERELHELHLASGR-KT---VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVL  121 (326)
T ss_dssp             SBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTE-EE---EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCE
T ss_pred             CCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCc-EE---EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcE
Confidence            345678899974 556666678899999986542 21   222 35679999999999877764 34 599999988876


Q ss_pred             EEEeCC----CCCceEEEEEeCCCCeEEEeeCC----CceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEE-e
Q 042434          302 KHTFGD----HGFIVSSCAWFPDSKRLVCGSSD----TEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISV-L  372 (517)
Q Consensus       302 ~~~~~~----~~~~v~~i~~~~~~~~l~~~~~d----~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~  372 (517)
                      ......    ....+.+++++|+|+++++...+    +...++.++ .+ ....+... ......++|+|+++.++.+ +
T Consensus       122 ~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g-~~~~~~~~-~~~~~~i~~s~dg~~lyv~~~  198 (326)
T 2ghs_A          122 TLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KG-KVTKLFAD-ISIPNSICFSPDGTTGYFVDT  198 (326)
T ss_dssp             EEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TT-EEEEEEEE-ESSEEEEEECTTSCEEEEEET
T ss_pred             EEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-CC-cEEEeeCC-CcccCCeEEcCCCCEEEEEEC
Confidence            443321    12468899999999876655422    234488888 43 33333221 1246789999999877655 4


Q ss_pred             CCCcEEEEECC--Cc-e----EEee---ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEE
Q 042434          373 SDKDIRILNLG--TY-A----ERVI---SEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVI  442 (517)
Q Consensus       373 ~dg~i~i~d~~--~~-~----~~~~---~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i  442 (517)
                      .++.|.+||+.  ++ .    ....   .....+..++++++|...++...++.|..||..+  .....+.....   .+
T Consensus       199 ~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g--~~~~~i~~~~~---~~  273 (326)
T 2ghs_A          199 KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDG--NHIARYEVPGK---QT  273 (326)
T ss_dssp             TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTC--CEEEEEECSCS---BE
T ss_pred             CCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCC--CEEEEEECCCC---Cc
Confidence            56899999985  44 2    1111   1234567899999998777777778999999843  33344433322   24


Q ss_pred             EeecCC-CCCcEEEEecC
Q 042434          443 RSCFGG-LDGTFIASGSE  459 (517)
Q Consensus       443 ~~~~~s-~~~~~l~~~~~  459 (517)
                      .++.++ ++++.|++++.
T Consensus       274 ~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          274 TCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             EEEEEESTTSCEEEEEEB
T ss_pred             EEEEEecCCCCEEEEEec
Confidence            455555 77766654443

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.34  E-value=4.3e-11  Score=112.34  Aligned_cols=171  Identities=13%  Similarity=0.099  Sum_probs=126.8

Q ss_pred             ceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCe---------eEe-eeCcCCCceEEEEEccCCCEEEEEeCCCcEEEE
Q 042434          311 IVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNE---------IKA-WRGTRIPKVLDLAVTPDGENLISVLSDKDIRIL  380 (517)
Q Consensus       311 ~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~---------~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  380 (517)
                      ++..+++++...++++|+.++   +.+|+...-.         ... ....... |..++|  +++.++++ .++.|++|
T Consensus        39 ~~nlLais~~~gll~a~~~~~---l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~  111 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK---AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSL  111 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE---EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE---EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEE
Confidence            688999999999999999987   5557654211         111 1112233 999999  89999998 88999999


Q ss_pred             ECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEec
Q 042434          381 NLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGS  458 (517)
Q Consensus       381 d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  458 (517)
                      |+++..  .....+..++.++.+.+.  .+++++.||.+.+||+.+.... .    +.   ..+++++|+|+|  ++.|.
T Consensus       112 dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~-~----~~---~~Vs~v~WSpkG--~~vg~  179 (388)
T 1xip_A          112 DLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTK-Q----LA---QNVTSFDVTNSQ--LAVLL  179 (388)
T ss_dssp             ESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEE-E----EE---ESEEEEEECSSE--EEEEE
T ss_pred             EchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCccc-c----cc---CCceEEEEcCCc--eEEEE
Confidence            998765  333445566777766654  3888999999999999865322 1    22   237788889999  67788


Q ss_pred             CCCcEEEEecCCCce--eEEe------c---CCCCCeeEEEecCCCCcEEEEee
Q 042434          459 ENSQIYIWNRRNSKP--IEIL------S---GHSMTVNCVSWNPKRPKMLASAS  501 (517)
Q Consensus       459 ~dg~i~iwd~~~~~~--~~~~------~---~h~~~v~~v~~~~~~~~~l~s~~  501 (517)
                      .||++++|+...+..  ..++      .   +|...|.+|.|.+++ .++++-+
T Consensus       180 ~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~-~flv~y~  232 (388)
T 1xip_A          180 KDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQ-DFLAVFG  232 (388)
T ss_dssp             TTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSS-EEEEEEE
T ss_pred             cCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCC-eEEEEEc
Confidence            999999999887775  5566      2   478899999999998 6776643

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.26  E-value=2.3e-10  Score=107.14  Aligned_cols=261  Identities=8%  Similarity=-0.040  Sum_probs=164.3

Q ss_pred             ccccCCCcccEEEeccccCcEEEEEECCCCCEEEEee----------CCCcEEEEEecCCCeeeEEEEeccC-------C
Q 042434          205 CGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSS----------SDCSAIIWKVLEDSKLTLKHTLRSH-------Q  267 (517)
Q Consensus       205 ~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~----------~dg~i~iw~~~~~~~~~~~~~~~~h-------~  267 (517)
                      ..+|....+.+.++.....+  .+.++|||++++++.          .++.|.+||..+...   ..++..+       .
T Consensus        49 svID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v---v~~I~v~~~~~~~~g  123 (368)
T 1mda_H           49 WVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP---IADIELPDAPRFSVG  123 (368)
T ss_dssp             EEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE---EEEEEETTSCSCCBS
T ss_pred             EEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE---EEEEECCCccccccC
Confidence            35666677888888765566  799999999998886          368899999977644   3444322       1


Q ss_pred             CCEEEEEECCCCCeEEEEeC--CCeEEE--EECCCCcEEEEeCCCCCceEEEEEeCCCC-eEEEeeCCCceeEEEEeCCC
Q 042434          268 NPVSFVAWSPDDTKLLTCGN--AEVLKL--WDVETGICKHTFGDHGFIVSSCAWFPDSK-RLVCGSSDTEKGIFMCDCDG  342 (517)
Q Consensus       268 ~~v~~l~~s~~~~~l~s~~~--dg~i~i--wd~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~d~~v~i~~~~~~~  342 (517)
                      .....++++|||++++++..  +..+.+  +|+.+   +..+.... .   ....|+++ .+++.+.||.  +...+...
T Consensus       124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~-~---~~~~p~g~~~~~~~~~dg~--~~~vd~~~  194 (368)
T 1mda_H          124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS-C---FHIHPGAAATHYLGSCPAS--LAASDLAA  194 (368)
T ss_dssp             CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS-C---CCCEEEETTEEECCCCTTS--CEEEECCS
T ss_pred             CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC-c---eEEccCCCeEEEEEcCCCC--EEEEECcc
Confidence            23567899999999998864  457888  99877   44442211 1   11234443 4455566777  44455543


Q ss_pred             -----CeeE-----eeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceEEeec--------------cCCCeeE
Q 042434          343 -----NEIK-----AWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVIS--------------EEHPITS  398 (517)
Q Consensus       343 -----~~~~-----~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--------------~~~~i~~  398 (517)
                           ..+.     .+.... .+.   . .+++..++..+. +.+.+.|..+.......              .......
T Consensus       195 ~~~~~~~v~~~~t~~i~vg~-~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~  268 (368)
T 1mda_H          195 APAAAGIVGAQCTGAQNCSS-QAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQM  268 (368)
T ss_dssp             SCCCCEECCCCSCTTSCBCS-CCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSC
T ss_pred             ccccCCeEEEEeeeeeeCCC-Ccc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCccee
Confidence                 2211     011111 122   3 666676666666 99999999754311110              0111223


Q ss_pred             EEEcCCCCEEEEEeC---------CCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCc-EEEEec-CCCcEEEEe
Q 042434          399 LSVSVDCKNFIVNLN---------SQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGT-FIASGS-ENSQIYIWN  467 (517)
Q Consensus       399 ~~~s~~~~~l~~~~~---------d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~-~dg~i~iwd  467 (517)
                      ++++|+++.++++..         ++.+.++|+.+. +.+..+....    ....+.+++||+ .+++.. .++.|.++|
T Consensus       269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~-~vv~~i~vg~----~p~gi~~s~Dg~~l~va~~~~~~~VsVID  343 (368)
T 1mda_H          269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG-QTSGPISNGH----DSDAIIAAQDGASDNYANSAGTEVLDIYD  343 (368)
T ss_dssp             EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC-CEEECCEEEE----EECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred             eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCC-eEEEEEECCC----CcceEEECCCCCEEEEEccCCCCeEEEEE
Confidence            789999999887643         246679999886 4444443222    133455589997 455555 589999999


Q ss_pred             cCCCceeEEecCCCCCeeEEEecC
Q 042434          468 RRNSKPIEILSGHSMTVNCVSWNP  491 (517)
Q Consensus       468 ~~~~~~~~~~~~h~~~v~~v~~~~  491 (517)
                      +.+++.+.++.... ....+++.+
T Consensus       344 ~~t~kvv~~I~vg~-~P~~i~~~~  366 (368)
T 1mda_H          344 AASDQDQSSVELDK-GPESLSVQN  366 (368)
T ss_dssp             SSSCEEEEECCCCS-CCCEEECCC
T ss_pred             CCCCcEEEEEECCC-CCCEEEeec
Confidence            99999999998554 345666654

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.26  E-value=5.4e-09  Score=99.62  Aligned_cols=259  Identities=12%  Similarity=0.051  Sum_probs=157.7

Q ss_pred             CCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCce
Q 042434          233 NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIV  312 (517)
Q Consensus       233 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v  312 (517)
                      ++..++.++.++.|..+|..+++..   ...............  .+..+++++.++.|..+|..+|+.+..+.......
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~---W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~  176 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVA---WQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSL  176 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEE---EEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEE---EEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCce
Confidence            4557778888999999999777432   222222111111112  24578888899999999999999887765432111


Q ss_pred             -----EEEEEeCCCCeEEEeeCCCceeEEEEeCCC-CeeEeeeCcCCC------ceEEEEEcc--CCCEEEEEeCCCcEE
Q 042434          313 -----SSCAWFPDSKRLVCGSSDTEKGIFMCDCDG-NEIKAWRGTRIP------KVLDLAVTP--DGENLISVLSDKDIR  378 (517)
Q Consensus       313 -----~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~~~~------~i~~~~~~~--~~~~l~~~~~dg~i~  378 (517)
                           ......  +..+++++.++.  ++.+|..+ ...-........      .+..+...|  .+..+++++.++.+.
T Consensus       177 ~~~~~~~~~~~--~~~v~~g~~~g~--l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~  252 (376)
T 3q7m_A          177 SLRGESAPTTA--FGAAVVGGDNGR--VSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLT  252 (376)
T ss_dssp             --CCCCCCEEE--TTEEEECCTTTE--EEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEE
T ss_pred             eecCCCCcEEE--CCEEEEEcCCCE--EEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEE
Confidence                 112222  457788888887  88888764 333333221100      000000111  246788888899999


Q ss_pred             EEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEec
Q 042434          379 ILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGS  458 (517)
Q Consensus       379 i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  458 (517)
                      .+|..+++............+..  ++..+++++.++.+..+|..++ .............  .....  ..+..|++++
T Consensus       253 ~~d~~tG~~~w~~~~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG-~~~w~~~~~~~~~--~~~~~--~~~~~l~v~~  325 (376)
T 3q7m_A          253 ALDLRSGQIMWKRELGSVNDFIV--DGNRIYLVDQNDRVMALTIDGG-VTLWTQSDLLHRL--LTSPV--LYNGNLVVGD  325 (376)
T ss_dssp             EEETTTCCEEEEECCCCEEEEEE--ETTEEEEEETTCCEEEEETTTC-CEEEEECTTTTSC--CCCCE--EETTEEEEEC
T ss_pred             EEECCCCcEEeeccCCCCCCceE--ECCEEEEEcCCCeEEEEECCCC-cEEEeecccCCCc--ccCCE--EECCEEEEEe
Confidence            99998887433333333444433  4678888889999999999877 3333333111110  00110  1346788888


Q ss_pred             CCCcEEEEecCCCceeEEecCCCCCeeE-EEecCCCCcEEEEeeCCCcEEEeC
Q 042434          459 ENSQIYIWNRRNSKPIEILSGHSMTVNC-VSWNPKRPKMLASASDDHTIRIWG  510 (517)
Q Consensus       459 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~-v~~~~~~~~~l~s~~~dg~v~iw~  510 (517)
                      .+|.|+++|..+|+.+.........+.+ ... .++  .|+.++.||.|..|+
T Consensus       326 ~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~-~~~--~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          326 SEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA-ADG--KLLIQAKDGTVYSIT  375 (376)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCTTCBCSCCEE-ETT--EEEEEBTTSCEEEEE
T ss_pred             CCCeEEEEECCCCcEEEEEecCCCcceeCCEE-ECC--EEEEEeCCCEEEEEe
Confidence            9999999999999988877654333332 222 234  577889999999886

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.23  E-value=8.3e-09  Score=98.33  Aligned_cols=265  Identities=5%  Similarity=-0.093  Sum_probs=159.8

Q ss_pred             CCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccC-------CCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEe
Q 042434          233 NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSH-------QNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTF  305 (517)
Q Consensus       233 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h-------~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  305 (517)
                      .+..+++++.++.|..+|..+++.. ....+...       ...+.+. ...++..+++++.++.|..+|..+|+.+...
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~-W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~  129 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEI-WSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQT  129 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEE-EEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             ECCEEEEEcCCCeEEEEEccCCcee-eeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEE
Confidence            4567777888899999998776432 11222111       2223221 1224567888889999999999999988766


Q ss_pred             CCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC-CeeEeeeCcCCCc----eEEEEEccCCCEEEEEeCCCcEEEE
Q 042434          306 GDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG-NEIKAWRGTRIPK----VLDLAVTPDGENLISVLSDKDIRIL  380 (517)
Q Consensus       306 ~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~~~~~----i~~~~~~~~~~~l~~~~~dg~i~i~  380 (517)
                      .............  +..+++++.++.  ++.+|..+ ..+..........    .......  +..+++++.++.+..+
T Consensus       130 ~~~~~~~~~p~~~--~~~v~v~~~~g~--l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~  203 (376)
T 3q7m_A          130 KVAGEALSRPVVS--DGLVLIHTSNGQ--LQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAV  203 (376)
T ss_dssp             ECSSCCCSCCEEE--TTEEEEECTTSE--EEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEE
T ss_pred             eCCCceEcCCEEE--CCEEEEEcCCCe--EEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEE
Confidence            5432221112222  457788888887  88899764 4443333221100    0111222  4578888889999999


Q ss_pred             ECCCceE-EeeccCCCe-----e---EEEEcC--CCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCC
Q 042434          381 NLGTYAE-RVISEEHPI-----T---SLSVSV--DCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGL  449 (517)
Q Consensus       381 d~~~~~~-~~~~~~~~i-----~---~~~~s~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~  449 (517)
                      |..+++. .......+.     .   .+...|  .+..+++++.++.+..+|..++ .........  ...   ..  ..
T Consensus       204 d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG-~~~w~~~~~--~~~---~~--~~  275 (376)
T 3q7m_A          204 LMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSG-QIMWKRELG--SVN---DF--IV  275 (376)
T ss_dssp             ETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTC-CEEEEECCC--CEE---EE--EE
T ss_pred             ECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCC-cEEeeccCC--CCC---Cc--eE
Confidence            9988772 222211110     0   011111  3567888888999999999876 333333211  111   11  12


Q ss_pred             CCcEEEEecCCCcEEEEecCCCceeEEecC-CCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434          450 DGTFIASGSENSQIYIWNRRNSKPIEILSG-HSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSE  516 (517)
Q Consensus       450 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~  516 (517)
                      ++..++.++.+|.|+.+|..+|+.+..... ....+......  + ..++.++.+|.|.++|..+++.
T Consensus       276 ~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~-~~l~v~~~~g~l~~~d~~tG~~  340 (376)
T 3q7m_A          276 DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--N-GNLVVGDSEGYLHWINVEDGRF  340 (376)
T ss_dssp             ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--T-TEEEEECTTSEEEEEETTTCCE
T ss_pred             ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--C-CEEEEEeCCCeEEEEECCCCcE
Confidence            456778888899999999999998877652 22233333333  3 3678888999999999988763

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.22  E-value=3.2e-08  Score=89.25  Aligned_cols=251  Identities=10%  Similarity=0.002  Sum_probs=155.6

Q ss_pred             CCEEEEeeCCCcEEEEEecCCCee--eEEEEeccCCCCEEEEEECCCCCeEEEE-eCCCeEEEEECCCCcEEEEeCCCCC
Q 042434          234 GEYLASSSSDCSAIIWKVLEDSKL--TLKHTLRSHQNPVSFVAWSPDDTKLLTC-GNAEVLKLWDVETGICKHTFGDHGF  310 (517)
Q Consensus       234 ~~~l~t~~~dg~i~iw~~~~~~~~--~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~  310 (517)
                      |.+|+.+.. +.|+.+++......  .....+......+..++|++++..|+.+ ..++.|..++...+.....+.....
T Consensus         1 ~~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~   79 (267)
T 1npe_A            1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLG   79 (267)
T ss_dssp             CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCC
T ss_pred             CcEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCC
Confidence            345555554 47888887643211  0011111112357899999976655544 4578999999976654444433335


Q ss_pred             ceEEEEEeCCCCeEEEeeC-CCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeC---CCcEEEEECCCce
Q 042434          311 IVSSCAWFPDSKRLVCGSS-DTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLS---DKDIRILNLGTYA  386 (517)
Q Consensus       311 ~v~~i~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~  386 (517)
                      ....+++.+++..++.+.. .+.  |..++..+.....+..........++++|++..++.+..   .+.|..+++....
T Consensus        80 ~p~~ia~d~~~~~lyv~d~~~~~--I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~  157 (267)
T 1npe_A           80 SPEGIALDHLGRTIFWTDSQLDR--IEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN  157 (267)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTE--EEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC
T ss_pred             CccEEEEEecCCeEEEEECCCCE--EEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC
Confidence            6789999997766665544 445  888888765444433323246789999997666665554   3688888886544


Q ss_pred             EE-ee-ccCCCeeEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcE
Q 042434          387 ER-VI-SEEHPITSLSVSVDCKNFIVNL-NSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQI  463 (517)
Q Consensus       387 ~~-~~-~~~~~i~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i  463 (517)
                      .. .. ........++++++++.++++. ..+.|..+|..+. .......+.. ....+   ... ++..+++...++.|
T Consensus       158 ~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~-~~~~~~~~~~-~P~gi---~~d-~~~lyva~~~~~~v  231 (267)
T 1npe_A          158 RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP-GRRKVLEGLQ-YPFAV---TSY-GKNLYYTDWKTNSV  231 (267)
T ss_dssp             CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE-EEEEEEECCC-SEEEE---EEE-TTEEEEEETTTTEE
T ss_pred             cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC-ceEEEecCCC-CceEE---EEe-CCEEEEEECCCCeE
Confidence            22 22 2334678999999877665554 5679999998753 2222222211 11122   212 34444555566899


Q ss_pred             EEEecCCCceeEEecCCC-CCeeEEEecCCC
Q 042434          464 YIWNRRNSKPIEILSGHS-MTVNCVSWNPKR  493 (517)
Q Consensus       464 ~iwd~~~~~~~~~~~~h~-~~v~~v~~~~~~  493 (517)
                      .++|..+++.+..+.... ....++++.|++
T Consensus       232 ~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~  262 (267)
T 1npe_A          232 IAMDLAISKEMDTFHPHKQTRLYGITIALSQ  262 (267)
T ss_dssp             EEEETTTTEEEEEECCSSCCCCCCEEEECSC
T ss_pred             EEEeCCCCCceEEEccccccccceeeecCcc
Confidence            999999999888886433 246788888876

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.20  E-value=2.1e-09  Score=110.13  Aligned_cols=258  Identities=9%  Similarity=0.056  Sum_probs=161.0

Q ss_pred             CCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccC-C----CCEEE-EEECCCCCeEEEEeC------CCeEEEEECCCCc
Q 042434          233 NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSH-Q----NPVSF-VAWSPDDTKLLTCGN------AEVLKLWDVETGI  300 (517)
Q Consensus       233 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h-~----~~v~~-l~~s~~~~~l~s~~~------dg~i~iwd~~~~~  300 (517)
                      ++..|++++.|+.+..+|..+++..   ..+..+ .    ..+.+ ...  .+..+++++.      +|.|..+|..+|+
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~~~---W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~  201 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGKEV---WHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGE  201 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEE---EEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCC
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEE---eeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCc
Confidence            4567888889999999999877543   333322 1    11111 011  2345555543      7899999999999


Q ss_pred             EEEEeCCCCCc--------------------------------eEEEEEeCCCCeEEEeeCCCc----------------
Q 042434          301 CKHTFGDHGFI--------------------------------VSSCAWFPDSKRLVCGSSDTE----------------  332 (517)
Q Consensus       301 ~~~~~~~~~~~--------------------------------v~~i~~~~~~~~l~~~~~d~~----------------  332 (517)
                      .+..+......                                ...+++.|++..++.++.++.                
T Consensus       202 ~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~  281 (677)
T 1kb0_A          202 RKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLY  281 (677)
T ss_dssp             EEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTT
T ss_pred             EEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCee
Confidence            98776432111                                124788898888888876642                


Q ss_pred             -eeEEEEeCCCCee-EeeeCcC--------CCceEEEEEccCC---CEEEEEeCCCcEEEEECCCceEEeeccC------
Q 042434          333 -KGIFMCDCDGNEI-KAWRGTR--------IPKVLDLAVTPDG---ENLISVLSDKDIRILNLGTYAERVISEE------  393 (517)
Q Consensus       333 -v~i~~~~~~~~~~-~~~~~~~--------~~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~------  393 (517)
                       ..|+-+|..+... -.+...+        ......+....+|   ..++.++.+|.++++|..+++.......      
T Consensus       282 ~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~  361 (677)
T 1kb0_A          282 LASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWA  361 (677)
T ss_dssp             TTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSE
T ss_pred             eEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcc
Confidence             1388888875443 3333211        1122223334477   6789999999999999998873211110      


Q ss_pred             -------CC------------------------eeEEEEcCCCCEEEEEeCC----------------------------
Q 042434          394 -------HP------------------------ITSLSVSVDCKNFIVNLNS----------------------------  414 (517)
Q Consensus       394 -------~~------------------------i~~~~~s~~~~~l~~~~~d----------------------------  414 (517)
                             .+                        -..++++|++..+++...+                            
T Consensus       362 ~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  441 (677)
T 1kb0_A          362 SGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWN  441 (677)
T ss_dssp             EEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCC
T ss_pred             cccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccc
Confidence                   00                        1256889988888876432                            


Q ss_pred             ---------------CeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecC
Q 042434          415 ---------------QEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSG  479 (517)
Q Consensus       415 ---------------~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  479 (517)
                                     +.|..||+.++ +....+...... .   ...+..++..++.++.||.+++||.++|+.+..+..
T Consensus       442 ~g~~~~~~~~~~~~~g~l~A~D~~tG-~~~W~~~~~~~~-~---~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~  516 (677)
T 1kb0_A          442 TAKFFNAEPPKSKPFGRLLAWDPVAQ-KAAWSVEHVSPW-N---GGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT  516 (677)
T ss_dssp             CCEEECSSCCCSCCEEEEEEEETTTT-EEEEEEEESSSC-C---CCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cccccccccCCCCCccEEEEEeCCCC-cEEeecCCCCCC-c---CcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeC
Confidence                           67999999877 444444322111 0   011134677888899999999999999999999874


Q ss_pred             CC-CCeeEEEecCCCCcEEEEe
Q 042434          480 HS-MTVNCVSWNPKRPKMLASA  500 (517)
Q Consensus       480 h~-~~v~~v~~~~~~~~~l~s~  500 (517)
                      .. ....-+.|.++|..+++..
T Consensus       517 ~~~~~~~p~~y~~~G~~~v~~~  538 (677)
T 1kb0_A          517 GTGVVAAPSTYMVDGRQYVSVA  538 (677)
T ss_dssp             SSCCCSCCEEEEETTEEEEEEE
T ss_pred             CCCcccCCEEEEeCCEEEEEEe
Confidence            33 3334566777884455543

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.19  E-value=2.7e-13  Score=128.73  Aligned_cols=256  Identities=12%  Similarity=-0.045  Sum_probs=133.6

Q ss_pred             CCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCC-c
Q 042434          233 NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGF-I  311 (517)
Q Consensus       233 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~  311 (517)
                      ++..+++++.||.|+.||..+++..   ..+..  +.+.+..+..++..+++++.||.|..||..+|+.+..+..+.. .
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~---W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~   82 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIK---WTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPEL   82 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEE---EEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHH
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEE---EEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccc
Confidence            5778999999999999999877543   33333  4455555566787888888999999999999987766643311 1


Q ss_pred             eE-EEEEeCCCCeEEEeeCCCceeEEEEeCCCCee-EeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceE-E
Q 042434          312 VS-SCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEI-KAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAE-R  388 (517)
Q Consensus       312 v~-~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~  388 (517)
                      +. +..+. ++..+++++.++.  ++.||..+... ..+....     ...++|++..+++++.++.|+.||.++++. .
T Consensus        83 ~~~sp~~~-~~~~v~~g~~dg~--v~a~D~~tG~~~w~~~~~~-----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W  154 (369)
T 2hz6_A           83 VQASPCRS-SDGILYMGKKQDI--WYVIDLLTGEKQQTLSSAF-----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRW  154 (369)
T ss_dssp             HTTCSCC------CCCCEEEEE--EEEECCC---------------------------EEEEEEEEEEECCCSSSSSCCC
T ss_pred             cccCceEe-cCCEEEEEeCCCE--EEEEECCCCcEEEEecCCC-----cccccccCCEEEEEecCCEEEEEECCCCCEEE
Confidence            10 00111 3456778888887  89999874433 3322221     234566888999999999999999988762 1


Q ss_pred             eeccCCCeeEEEEcCCC---CEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEE----EEecCCC
Q 042434          389 VISEEHPITSLSVSVDC---KNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFI----ASGSENS  461 (517)
Q Consensus       389 ~~~~~~~i~~~~~s~~~---~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l----~~~~~dg  461 (517)
                      .... .......+.++.   ..+++++.+|.+..||..++ .....+....   ..+....++++|...    +.+  ++
T Consensus       155 ~~~~-~~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG-~~~W~~~~~~---pv~~~~~~~~dg~~~v~~~~~~--~~  227 (369)
T 2hz6_A          155 NATY-FDYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESG-DVLWIQNYAS---PVVAFYVWQREGLRKVMHINVA--VE  227 (369)
T ss_dssp             EEEE-EEECCBCCCCCTTCCCCEEEEETSCEEEEECTTTC-CEEEEEECSS---CEEEEEECTTSSCEEECCEEEE--HH
T ss_pred             eEec-ccccCccccCCccccceEEEECCCCEEEEEECCCC-cEEEEecCCC---ceEEEEEecCCceEeccceeec--cc
Confidence            1111 112223333332   56778889999999999876 4444433211   122233334555422    112  34


Q ss_pred             cEEEEecCCCc----eeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCC
Q 042434          462 QIYIWNRRNSK----PIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPC  512 (517)
Q Consensus       462 ~i~iwd~~~~~----~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~  512 (517)
                      .++.+|..+|+    .+..+... +.+.+...  .+ ..++.++.||.++.++..
T Consensus       228 ~l~~ld~~tG~~~~~~~W~~~~~-~~~~sp~~--~~-g~lyv~~~~G~l~al~~~  278 (369)
T 2hz6_A          228 TLRYLTFMSGEVGRITKWKYPFP-KETEAKSK--LT-PTLYVGKYSTSLYASPSM  278 (369)
T ss_dssp             HHHHHHHHHHHHHHHHTSCCCCC-CHHHHHHH--SE-EEECBEECSSCEECCEEE
T ss_pred             ceeeeehhcCCcccceeeeeccC-cccccccc--cc-ceEEEecccCCEEecCcc
Confidence            46667766666    44333211 11111111  12 356777778888777654

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.19  E-value=4.1e-09  Score=108.16  Aligned_cols=261  Identities=12%  Similarity=0.118  Sum_probs=161.5

Q ss_pred             CCCEEEEeeCCCcEEEEEecCCCeeeEEEEecc--CCCCEEEEEECC---CCCeEEEEe------CCCeEEEEECCCCcE
Q 042434          233 NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRS--HQNPVSFVAWSP---DDTKLLTCG------NAEVLKLWDVETGIC  301 (517)
Q Consensus       233 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~--h~~~v~~l~~s~---~~~~l~s~~------~dg~i~iwd~~~~~~  301 (517)
                      .+..|++++.|+.|..+|..+++..   ..+..  +......+..+|   ++ .+++++      .+|.|..||..+|+.
T Consensus       120 ~~g~v~v~~~dg~l~AlDa~TG~~~---W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~  195 (689)
T 1yiq_A          120 WKGKVYVGVLDGRLEAIDAKTGQRA---WSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKE  195 (689)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEE---EEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCE
T ss_pred             ECCEEEEEccCCEEEEEECCCCCEe---eeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcE
Confidence            3567888889999999999877543   22221  111111111122   44 444443      378999999999998


Q ss_pred             EEEeCCC--C-----------------------------CceEEEEEeCCCCeEEEeeCCCc-----------------e
Q 042434          302 KHTFGDH--G-----------------------------FIVSSCAWFPDSKRLVCGSSDTE-----------------K  333 (517)
Q Consensus       302 ~~~~~~~--~-----------------------------~~v~~i~~~~~~~~l~~~~~d~~-----------------v  333 (517)
                      +..+...  .                             .....+++.|++..+++++.++.                 .
T Consensus       196 ~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~  275 (689)
T 1yiq_A          196 AWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLS  275 (689)
T ss_dssp             EEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTT
T ss_pred             EEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeee
Confidence            8776421  0                             01125788888889998887752                 1


Q ss_pred             eEEEEeCCCCe-eEeeeCc-C-------CCceEEEEEccCCC---EEEEEeCCCcEEEEECCCceEEeec---c------
Q 042434          334 GIFMCDCDGNE-IKAWRGT-R-------IPKVLDLAVTPDGE---NLISVLSDKDIRILNLGTYAERVIS---E------  392 (517)
Q Consensus       334 ~i~~~~~~~~~-~~~~~~~-~-------~~~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~---~------  392 (517)
                      .|+-+|..+.. +-.+... +       ...........+|+   .++.++.+|.++++|..+++.....   .      
T Consensus       276 ~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~  355 (689)
T 1yiq_A          276 SIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKG  355 (689)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred             eEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccc
Confidence            38888887544 3333321 1       11222223333565   7889999999999999988732100   0      


Q ss_pred             --------------------------------CCCeeEEEEcCCCCEEEEEeC---------------------------
Q 042434          393 --------------------------------EHPITSLSVSVDCKNFIVNLN---------------------------  413 (517)
Q Consensus       393 --------------------------------~~~i~~~~~s~~~~~l~~~~~---------------------------  413 (517)
                                                      ...-..++++|+...+++...                           
T Consensus       356 ~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  435 (689)
T 1yiq_A          356 MDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLR  435 (689)
T ss_dssp             EETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSE
T ss_pred             cCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcc
Confidence                                            001123688888888777532                           


Q ss_pred             ------------------CCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeE
Q 042434          414 ------------------SQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIE  475 (517)
Q Consensus       414 ------------------d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  475 (517)
                                        +|.|..||+.++ +....+..+.....    ..+...+.++++|+.||.++.||.++|+.+.
T Consensus       436 ~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG-~~~W~~~~~~~~~~----g~~~tagglvf~gt~dg~l~a~D~~tG~~lw  510 (689)
T 1yiq_A          436 TGMMPEGAEGLLEMAKSWSGKLIAWDPVKQ-QAAWEVPYVTIFNG----GTLSTAGNLVFEGSADGRVIAYAADTGEKLW  510 (689)
T ss_dssp             ECCCCSSHHHHHHHHTTCEEEEEEEETTTT-EEEEEEEESSSCCC----CEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ccccCcccccCCCCCCCcceeEEEEECCCC-CeEeEccCCCCccC----ccceECCCEEEEECCCCcEEEEECCCCccce
Confidence                              367999999887 44444443322111    0113467789999999999999999999998


Q ss_pred             EecCCCCC-eeEEEecCCCCcEEEEeeC
Q 042434          476 ILSGHSMT-VNCVSWNPKRPKMLASASD  502 (517)
Q Consensus       476 ~~~~h~~~-v~~v~~~~~~~~~l~s~~~  502 (517)
                      .+....+. ..-+.|..+|..++++.+.
T Consensus       511 ~~~~~~~~~~~p~ty~~~G~qyv~~~~G  538 (689)
T 1yiq_A          511 EQPAASGVMAAPVTYSVDGEQYVTFMAG  538 (689)
T ss_dssp             EEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             eeeCCCCcccCceEEEECCEEEEEEEec
Confidence            88754332 2457777888555555443

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.18  E-value=2e-09  Score=110.22  Aligned_cols=271  Identities=10%  Similarity=0.018  Sum_probs=169.3

Q ss_pred             CCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCC-----------CEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEE
Q 042434          234 GEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQN-----------PVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICK  302 (517)
Q Consensus       234 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~-----------~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~  302 (517)
                      +..|++++.++.|.-+|..+++.   +-.+.....           ....+++  ++..|++++.|+.|..+|..+|+.+
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~---~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~  151 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNR---IWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEV  151 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEE---EEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcE---EEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEE
Confidence            45666677788899999877633   233322211           0012222  4668888899999999999999998


Q ss_pred             EEeCCC-C----CceEE-EEEeCCCCeEEEeeC------CCceeEEEEeCCC-CeeEeeeCcCCC---------------
Q 042434          303 HTFGDH-G----FIVSS-CAWFPDSKRLVCGSS------DTEKGIFMCDCDG-NEIKAWRGTRIP---------------  354 (517)
Q Consensus       303 ~~~~~~-~----~~v~~-i~~~~~~~~l~~~~~------d~~v~i~~~~~~~-~~~~~~~~~~~~---------------  354 (517)
                      ..+... .    ..+.+ ...  .+..+++++.      ++.  |+.+|..+ +.+-.+......               
T Consensus       152 W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~--v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~  227 (677)
T 1kb0_A          152 WHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGY--ITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAAR  227 (677)
T ss_dssp             EEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCE--EEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHT
T ss_pred             eeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCE--EEEEECCCCcEEEEeccCCCCccccccccccccccc
Confidence            877644 1    12211 111  2345555543      566  88888764 444333321110               


Q ss_pred             ----------------ceEEEEEccCCCEEEEEeCCC-------------------cEEEEECCCceE-Eeec---cC--
Q 042434          355 ----------------KVLDLAVTPDGENLISVLSDK-------------------DIRILNLGTYAE-RVIS---EE--  393 (517)
Q Consensus       355 ----------------~i~~~~~~~~~~~l~~~~~dg-------------------~i~i~d~~~~~~-~~~~---~~--  393 (517)
                                      ....++++|++..+++++.++                   .|..+|..+++. ....   +.  
T Consensus       228 ~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~w  307 (677)
T 1kb0_A          228 TWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNW  307 (677)
T ss_dssp             TSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCS
T ss_pred             cccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccc
Confidence                            113578889999988887664                   499999998882 2221   11  


Q ss_pred             -----CCeeEEEEcCCC---CEEEEEeCCCeEEEEEcCCCCccceEEeCcccC--------ceEE---------------
Q 042434          394 -----HPITSLSVSVDC---KNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQN--------KYVI---------------  442 (517)
Q Consensus       394 -----~~i~~~~~s~~~---~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~--------~~~i---------------  442 (517)
                           .....+....+|   +.+++++.+|.++++|..++ +.+.........        ...+               
T Consensus       308 d~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG-~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~  386 (677)
T 1kb0_A          308 DYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG-KFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAV  386 (677)
T ss_dssp             CCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC-CEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECS
T ss_pred             ccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC-CEeccccccccCcccccCCCCceeeccccCcCCCccEEC
Confidence                 122233334477   67889999999999999887 333332211000        0000               


Q ss_pred             ---------EeecCCCCCcEEEEecC-------------------------------------------CCcEEEEecCC
Q 042434          443 ---------RSCFGGLDGTFIASGSE-------------------------------------------NSQIYIWNRRN  470 (517)
Q Consensus       443 ---------~~~~~s~~~~~l~~~~~-------------------------------------------dg~i~iwd~~~  470 (517)
                               ....++|++.++++...                                           .|.|..||+.+
T Consensus       387 P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~t  466 (677)
T 1kb0_A          387 PGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVA  466 (677)
T ss_dssp             SCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTT
T ss_pred             cCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCC
Confidence                     12334677777776532                                           27899999999


Q ss_pred             CceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434          471 SKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSE  516 (517)
Q Consensus       471 ~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~  516 (517)
                      ++.+..+. +..++.+..+...+ .+++.++.||.+++||..+++.
T Consensus       467 G~~~W~~~-~~~~~~~g~~~~~g-~~v~~g~~dg~l~a~D~~tG~~  510 (677)
T 1kb0_A          467 QKAAWSVE-HVSPWNGGTLTTAG-NVVFQGTADGRLVAYHAATGEK  510 (677)
T ss_dssp             TEEEEEEE-ESSSCCCCEEEETT-TEEEEECTTSEEEEEETTTCCE
T ss_pred             CcEEeecC-CCCCCcCcceEeCC-CEEEEECCCCcEEEEECCCCce
Confidence            99988876 33445555566666 5788889999999999999875

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.18  E-value=2.4e-11  Score=115.23  Aligned_cols=201  Identities=13%  Similarity=0.056  Sum_probs=115.5

Q ss_pred             CCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCC-CCeeEeeeCcCCCce
Q 042434          278 DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD-GNEIKAWRGTRIPKV  356 (517)
Q Consensus       278 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~-~~~~~~~~~~~~~~i  356 (517)
                      ++..+++++.||.|..||..+|+.+..+..  ..+.+..+..++..+++++.|+.  ++.||.. ++.+..+.......+
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~--l~a~d~~tG~~~w~~~~~~~~~~   83 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGS--LYTLGSKNNEGLTKLPFTIPELV   83 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCC--EEEC-----CCSEECSCCHHHHH
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCE--EEEEECCCCceeeeeeccCcccc
Confidence            577899999999999999999999888765  45555555667878888889999  8888885 444434332211011


Q ss_pred             E-EEEEccCCCEEEEEeCCCcEEEEECCCceEE-eeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeC
Q 042434          357 L-DLAVTPDGENLISVLSDKDIRILNLGTYAER-VISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTG  434 (517)
Q Consensus       357 ~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~  434 (517)
                      . +..+. ++..+++++.++.++.||..+++.. ......   ...++|++..+++++.++.|+.||.+++ .....+..
T Consensus        84 ~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~---~~~~~p~~~~v~~~~~dg~v~a~d~~tG-~~~W~~~~  158 (369)
T 2hz6_A           84 QASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF---ADSLSPSTSLLYLGRTEYTITMYDTKTR-ELRWNATY  158 (369)
T ss_dssp             TTCSCC------CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSSSS-SCCCEEEE
T ss_pred             ccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC---cccccccCCEEEEEecCCEEEEEECCCC-CEEEeEec
Confidence            0 00111 3457788889999999999988732 222221   2345678889999999999999999876 44333332


Q ss_pred             cccCceEEEeecCCCCC---cEEEEecCCCcEEEEecCCCceeEEecCCCCCee-EEEecCCC
Q 042434          435 HSQNKYVIRSCFGGLDG---TFIASGSENSQIYIWNRRNSKPIEILSGHSMTVN-CVSWNPKR  493 (517)
Q Consensus       435 ~~~~~~~i~~~~~s~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~-~v~~~~~~  493 (517)
                      ..     .....+..+.   ..+++++.||.|+.||..+|+.+..... ..++. ...+++++
T Consensus       159 ~~-----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~~pv~~~~~~~~dg  215 (369)
T 2hz6_A          159 FD-----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY-ASPVVAFYVWQREG  215 (369)
T ss_dssp             EE-----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC-SSCEEEEEECTTSS
T ss_pred             cc-----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC-CCceEEEEEecCCc
Confidence            11     1112223321   4577788899999999999998888763 34443 44566666

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.16  E-value=2.1e-09  Score=100.43  Aligned_cols=283  Identities=12%  Similarity=0.069  Sum_probs=172.0

Q ss_pred             CcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeE
Q 042434          203 HCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKL  282 (517)
Q Consensus       203 ~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l  282 (517)
                      ....++ ...+.......+...+.++...++|. |..++.+  +..+|. ++...   ..+...........+.  +..+
T Consensus        41 ~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~---~~~~~~~~~~~~~~~~--~~~l  110 (330)
T 3hxj_A           41 NLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEK---WRFDTKKAIVSDFTIF--EDIL  110 (330)
T ss_dssp             TTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGG---GGSCC-----CCEEEE--TTEE
T ss_pred             EEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEE---EEEECCCCcccCceEE--CCEE
Confidence            344444 44555555555556677888877776 4445444  777775 23221   1111111112222222  5567


Q ss_pred             EEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEc
Q 042434          283 LTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVT  362 (517)
Q Consensus       283 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~  362 (517)
                      ..++.++.+..+|.. ++...........+.++...+++. +..++.++.  ++.++..+......... ...+.++...
T Consensus       111 ~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~--l~~~d~~g~~~~~~~~~-~~~~~~~~~d  185 (330)
T 3hxj_A          111 YVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNY--LYAINPDGTEKWRFKTN-DAITSAASIG  185 (330)
T ss_dssp             EEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSE--EEEECTTSCEEEEEECS-SCCCSCCEEC
T ss_pred             EEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCE--EEEECCCCCEeEEEecC-CCceeeeEEc
Confidence            778889999999988 777766655555566667776666 555666666  89999885554444432 2356677777


Q ss_pred             cCCCEEEEEeCCCcEEEEECCCce-E-EeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCce
Q 042434          363 PDGENLISVLSDKDIRILNLGTYA-E-RVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKY  440 (517)
Q Consensus       363 ~~~~~l~~~~~dg~i~i~d~~~~~-~-~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~  440 (517)
                      +++...+ ++  +.+..+| .++. . ........+.++...+++. +.+++.++.+..+|..+  .....+......  
T Consensus       186 ~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~g--~~~~~~~~~~~~--  256 (330)
T 3hxj_A          186 KDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPDG--TEKWRFKTGKRI--  256 (330)
T ss_dssp             TTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTTS--CEEEEEECSSCC--
T ss_pred             CCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECCCC--CEeEEeeCCCCc--
Confidence            7777554 44  8899999 5544 2 2223335577888888764 56667788888887533  233333322211  


Q ss_pred             EEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCC
Q 042434          441 VIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQS  514 (517)
Q Consensus       441 ~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~  514 (517)
                       .......+++ .|..++.+|.|+.+|. +++.+..+......+.++...+++  .|..++.+|.+++......
T Consensus       257 -~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g--~l~~gt~~G~~~~~~~~~~  325 (330)
T 3hxj_A          257 -ESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENG--TIYFGTRNGKFYALFNLEH  325 (330)
T ss_dssp             -CSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTC--CEEEECTTSCEEEEEC---
T ss_pred             -cccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCC--EEEEEcCCCeEEEEecccc
Confidence             1112223344 5667788889999996 788777776666678888887887  3667899999998776543

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.16  E-value=2.5e-09  Score=109.73  Aligned_cols=274  Identities=11%  Similarity=0.028  Sum_probs=165.2

Q ss_pred             CCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCC----------CE-EEEEECCCCCeEEEEeCCCeEEEEECCCCcEE
Q 042434          234 GEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQN----------PV-SFVAWSPDDTKLLTCGNAEVLKLWDVETGICK  302 (517)
Q Consensus       234 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~----------~v-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~  302 (517)
                      +..|++++.++.|.-+|..+++..   -.+..+..          .+ ..+..  ++..+++++.|+.|..+|..+|+.+
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~---W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~  144 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLI---WKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRA  144 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEE---EEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCcee---EEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEe
Confidence            556777778889999999877532   33322211          00 11122  3568888899999999999999988


Q ss_pred             EEeCCC--CCceEEEEEeC--CCCeEEEeeC------CCceeEEEEeCCC-CeeEeeeCcC-------------------
Q 042434          303 HTFGDH--GFIVSSCAWFP--DSKRLVCGSS------DTEKGIFMCDCDG-NEIKAWRGTR-------------------  352 (517)
Q Consensus       303 ~~~~~~--~~~v~~i~~~~--~~~~l~~~~~------d~~v~i~~~~~~~-~~~~~~~~~~-------------------  352 (517)
                      ..+...  ......+..+|  .+..+++++.      ++.  ++-+|..+ +.+-.+....                   
T Consensus       145 W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~--v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~  222 (689)
T 1yiq_A          145 WSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGY--VTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTW  222 (689)
T ss_dssp             EEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCE--EEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTC
T ss_pred             eeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCE--EEEEECCCCcEEEEecccCCCccccccccccccccccc
Confidence            776532  11101111111  1334444432      465  88888764 4333332110                   


Q ss_pred             -----------CCceEEEEEccCCCEEEEEeCCCc-------------------EEEEECCCceE-Eeec---cC-----
Q 042434          353 -----------IPKVLDLAVTPDGENLISVLSDKD-------------------IRILNLGTYAE-RVIS---EE-----  393 (517)
Q Consensus       353 -----------~~~i~~~~~~~~~~~l~~~~~dg~-------------------i~i~d~~~~~~-~~~~---~~-----  393 (517)
                                 ......++++|++..+++++.++.                   |..+|..+++. ....   +.     
T Consensus       223 ~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~  302 (689)
T 1yiq_A          223 FGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYT  302 (689)
T ss_dssp             CSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCC
T ss_pred             CCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCccccccc
Confidence                       001125788898899999888764                   99999999882 2221   11     


Q ss_pred             --CCeeEEEEcCCCC---EEEEEeCCCeEEEEEcCCCCccceEEeCcc-------------------------cCc-eE-
Q 042434          394 --HPITSLSVSVDCK---NFIVNLNSQEIHMWDVAGKWEKPFKYTGHS-------------------------QNK-YV-  441 (517)
Q Consensus       394 --~~i~~~~~s~~~~---~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-------------------------~~~-~~-  441 (517)
                        .+........+|+   .++.++.+|.++++|..++ +.+.......                         ... .. 
T Consensus       303 ~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG-~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~  381 (689)
T 1yiq_A          303 ATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATG-ELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLV  381 (689)
T ss_dssp             CCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTC-CEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEE
T ss_pred             CCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCC-CEeccccccccccccccCccCCCcccchhhccccCCCCeeEe
Confidence              1122222333554   7888999999999999877 3321111000                         000 00 


Q ss_pred             ---------EEeecCCCCCcEEEEecC---------------------------------------------CCcEEEEe
Q 042434          442 ---------IRSCFGGLDGTFIASGSE---------------------------------------------NSQIYIWN  467 (517)
Q Consensus       442 ---------i~~~~~s~~~~~l~~~~~---------------------------------------------dg~i~iwd  467 (517)
                               ...+.++|+..++++...                                             +|.|+.||
T Consensus       382 ~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D  461 (689)
T 1yiq_A          382 TPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWD  461 (689)
T ss_dssp             SSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEE
T ss_pred             CCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEE
Confidence                     001334666666665421                                             47899999


Q ss_pred             cCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCCC
Q 042434          468 RRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSEV  517 (517)
Q Consensus       468 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~v  517 (517)
                      +.+|+.+..+..+. ++..-.+...+ .+++.++.||.++.||.++|+++
T Consensus       462 ~~tG~~~W~~~~~~-~~~~g~~~tag-glvf~gt~dg~l~a~D~~tG~~l  509 (689)
T 1yiq_A          462 PVKQQAAWEVPYVT-IFNGGTLSTAG-NLVFEGSADGRVIAYAADTGEKL  509 (689)
T ss_dssp             TTTTEEEEEEEESS-SCCCCEEEETT-TEEEEECTTSEEEEEETTTCCEE
T ss_pred             CCCCCeEeEccCCC-CccCccceECC-CEEEEECCCCcEEEEECCCCccc
Confidence            99999988887543 33333555556 58889999999999999999853

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.15  E-value=6.5e-09  Score=101.30  Aligned_cols=221  Identities=14%  Similarity=0.056  Sum_probs=144.8

Q ss_pred             CCCeEEEEeC-CCeEEEEECCCCcEEEEeCC-CCCceEEEEE-e-CCCCeEEEeeCC-------Cc---------eeEEE
Q 042434          278 DDTKLLTCGN-AEVLKLWDVETGICKHTFGD-HGFIVSSCAW-F-PDSKRLVCGSSD-------TE---------KGIFM  337 (517)
Q Consensus       278 ~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~-~~~~v~~i~~-~-~~~~~l~~~~~d-------~~---------v~i~~  337 (517)
                      ||++++.+.. ++.|.+.|+.+.++.+.+.- ....+..+++ + |+++++++++..       |.         -.+..
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv  179 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  179 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence            7888877665 55799999999998885532 2355788887 5 999999888521       11         12677


Q ss_pred             EeCCCCeeE-eeeCcCCCceEEEEEccCCCEEEEEeCCC--------------------------------------cEE
Q 042434          338 CDCDGNEIK-AWRGTRIPKVLDLAVTPDGENLISVLSDK--------------------------------------DIR  378 (517)
Q Consensus       338 ~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--------------------------------------~i~  378 (517)
                      +|..+..+. ++....  ....++++|+|+++++.+.+.                                      .|.
T Consensus       180 ID~~t~~v~~qI~Vgg--~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~  257 (595)
T 1fwx_A          180 VDADKWEVAWQVLVSG--NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  257 (595)
T ss_dssp             EETTTTEEEEEEEESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EECCCCeEEEEEEeCC--CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence            787765442 222222  345678999999998887543                                      477


Q ss_pred             EEECCC--ce--EEeeccCCCeeEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCc-------cceEEeCcccCceEEEeec
Q 042434          379 ILNLGT--YA--ERVISEEHPITSLSVSVDCKNFIVNLN-SQEIHMWDVAGKWE-------KPFKYTGHSQNKYVIRSCF  446 (517)
Q Consensus       379 i~d~~~--~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~-d~~i~~~d~~~~~~-------~~~~~~~~~~~~~~i~~~~  446 (517)
                      +.|..+  +.  ...+.......++.++|||++++++.. ++.|.++|+.+...       ...................
T Consensus       258 VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~a  337 (595)
T 1fwx_A          258 VVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTA  337 (595)
T ss_dssp             EEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEE
T ss_pred             EEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEE
Confidence            778776  32  234445557788999999999887765 78999999975310       0000111111111133445


Q ss_pred             CCCCCcEEEEecCCCcEEEEecCC----------CceeEEecCCCCCe-----eEEEecCCCCcEEEEee
Q 042434          447 GGLDGTFIASGSENSQIYIWNRRN----------SKPIEILSGHSMTV-----NCVSWNPKRPKMLASAS  501 (517)
Q Consensus       447 ~s~~~~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~h~~~v-----~~v~~~~~~~~~l~s~~  501 (517)
                      |+++|...++.-.|++|.+||+.+          ...+.++..|..+-     .++..+||| ++|+++.
T Consensus       338 F~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DG-k~l~~~N  406 (595)
T 1fwx_A          338 FDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATN-DWLVCLS  406 (595)
T ss_dssp             ECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCS-SEEEEEE
T ss_pred             ECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCC-CEEEEcC
Confidence            589995556677899999999877          55677777664432     234568999 5665554

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.15  E-value=2.9e-08  Score=93.37  Aligned_cols=224  Identities=13%  Similarity=0.067  Sum_probs=143.0

Q ss_pred             CCCCEEEE-eeCCCcEEEEEecCC-CeeeEEEEec-------cCCCCEEEEEECCCCCeEEEEeCC------CeEEEEEC
Q 042434          232 NNGEYLAS-SSSDCSAIIWKVLED-SKLTLKHTLR-------SHQNPVSFVAWSPDDTKLLTCGNA------EVLKLWDV  296 (517)
Q Consensus       232 ~~~~~l~t-~~~dg~i~iw~~~~~-~~~~~~~~~~-------~h~~~v~~l~~s~~~~~l~s~~~d------g~i~iwd~  296 (517)
                      +++++|+. |..++.|.|+|+.+. .+.+..+++.       .....-..+..+|+| .++++..+      |.|.+.|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            77887765 556889999998533 3345555552       111245667888999 66666555      78999999


Q ss_pred             CCCcEEEEeCCCC---CceEEEEEeCCCCeEEEee-------------------CCCceeEEEEeCCCCee-EeeeCc-C
Q 042434          297 ETGICKHTFGDHG---FIVSSCAWFPDSKRLVCGS-------------------SDTEKGIFMCDCDGNEI-KAWRGT-R  352 (517)
Q Consensus       297 ~~~~~~~~~~~~~---~~v~~i~~~~~~~~l~~~~-------------------~d~~v~i~~~~~~~~~~-~~~~~~-~  352 (517)
                      .+++.+.++....   .--..+.|+|+++.++++.                   .+..  |.+||..+..+ ..+... .
T Consensus       172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~--V~v~D~~~~k~~~tI~vg~~  249 (462)
T 2ece_A          172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNR--IHFWDLRKRKRIHSLTLGEE  249 (462)
T ss_dssp             TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCE--EEEEETTTTEEEEEEESCTT
T ss_pred             CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCE--EEEEECCCCcEeeEEecCCC
Confidence            9999999886332   2234588899999888885                   2445  88888775443 344432 1


Q ss_pred             CCceEEEEE--ccCCCEEEEEe------CCCcEEEEECCCce---EEee--c-----------------cCCCeeEEEEc
Q 042434          353 IPKVLDLAV--TPDGENLISVL------SDKDIRILNLGTYA---ERVI--S-----------------EEHPITSLSVS  402 (517)
Q Consensus       353 ~~~i~~~~~--~~~~~~l~~~~------~dg~i~i~d~~~~~---~~~~--~-----------------~~~~i~~~~~s  402 (517)
                      ......+.|  +|+++++++++      .+++|.+|....+.   ...+  .                 .......+.++
T Consensus       250 g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS  329 (462)
T 2ece_A          250 NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDIS  329 (462)
T ss_dssp             EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEEC
T ss_pred             CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEEC
Confidence            123445555  99999888776      45678765544332   1100  0                 02457889999


Q ss_pred             CCCCEEEEEeC-CCeEEEEEcCCCC--ccceEEeCccc--------Cc---eEEEeecCCCCCcEEEEec
Q 042434          403 VDCKNFIVNLN-SQEIHMWDVAGKW--EKPFKYTGHSQ--------NK---YVIRSCFGGLDGTFIASGS  458 (517)
Q Consensus       403 ~~~~~l~~~~~-d~~i~~~d~~~~~--~~~~~~~~~~~--------~~---~~i~~~~~s~~~~~l~~~~  458 (517)
                      +||++|+++.. .+.|.+||+....  ..+..+.....        +.   ..-+.+.++|||++|+++.
T Consensus       330 ~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          330 LDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             TTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            99999988876 6799999985331  22222221100        00   0123444589999999888

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.13  E-value=4.6e-08  Score=90.91  Aligned_cols=236  Identities=11%  Similarity=0.050  Sum_probs=151.0

Q ss_pred             CEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCC-C-------------------CCceEEEEEeCCCCeEEEee
Q 042434          269 PVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGD-H-------------------GFIVSSCAWFPDSKRLVCGS  328 (517)
Q Consensus       269 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~-------------------~~~v~~i~~~~~~~~l~~~~  328 (517)
                      ...+++|++++++++++..++.|..|+..++... .+.. .                   ...+..+++.+++..|+++.
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d   98 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD   98 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence            4567889999988888888999999998766543 2210 0                   12478899998333455554


Q ss_pred             CCCceeEEEEeCCCCeeEeeeC----cCCCceEEEEEcc-CCCEEEEEeC-----------------CCcEEEEECCCce
Q 042434          329 SDTEKGIFMCDCDGNEIKAWRG----TRIPKVLDLAVTP-DGENLISVLS-----------------DKDIRILNLGTYA  386 (517)
Q Consensus       329 ~d~~v~i~~~~~~~~~~~~~~~----~~~~~i~~~~~~~-~~~~l~~~~~-----------------dg~i~i~d~~~~~  386 (517)
                      ..+.  ++.++..+..+..+..    ........+++.+ +|+..++-..                 ++.|..||..++.
T Consensus        99 ~~~~--i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~  176 (322)
T 2fp8_A           99 CYYH--LSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE  176 (322)
T ss_dssp             TTTE--EEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred             CCCC--EEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence            4444  7788877654443322    1123478899999 8986665432                 3678999987665


Q ss_pred             E-EeeccCCCeeEEEEcCCCCEEEEE-eCCCeEEEEEcCCCCc-cceEEeCcccCceEEEeecCCCCCcEEEEecC----
Q 042434          387 E-RVISEEHPITSLSVSVDCKNFIVN-LNSQEIHMWDVAGKWE-KPFKYTGHSQNKYVIRSCFGGLDGTFIASGSE----  459 (517)
Q Consensus       387 ~-~~~~~~~~i~~~~~s~~~~~l~~~-~~d~~i~~~d~~~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~----  459 (517)
                      . ...........++++|+++.++++ +..+.|..|++.+... ....+.. ...   ...+...++|++.++...    
T Consensus       177 ~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~~g---P~gi~~d~~G~l~va~~~~~~~  252 (322)
T 2fp8_A          177 TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN---PGNIKRNADGHFWVSSSEELDG  252 (322)
T ss_dssp             EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-CSS---EEEEEECTTSCEEEEEEEETTS
T ss_pred             EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-CCC---CCCeEECCCCCEEEEecCcccc
Confidence            2 222223456789999999976665 5578999999875311 1111111 111   233445788887666544    


Q ss_pred             ------CCcEEEEecCCCceeEEecCCC----CCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCC
Q 042434          460 ------NSQIYIWNRRNSKPIEILSGHS----MTVNCVSWNPKRPKMLASASDDHTIRIWGPCQS  514 (517)
Q Consensus       460 ------dg~i~iwd~~~~~~~~~~~~h~----~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~  514 (517)
                            .+.|..+|. .++.+..+....    ..++++++. ++ .++++....+.|.++++...
T Consensus       253 ~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~~-~g-~L~v~~~~~~~i~~~~~~~~  314 (322)
T 2fp8_A          253 NMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQEH-DG-LLYIGTLFHGSVGILVYDKK  314 (322)
T ss_dssp             STTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEEE-TT-EEEEECSSCSEEEEEEC---
T ss_pred             cccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEEe-CC-EEEEeecCCCceEEEecccc
Confidence                  467888986 477777765432    456777773 55 67777778889999988643

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.08  E-value=1.3e-07  Score=89.06  Aligned_cols=221  Identities=11%  Similarity=0.043  Sum_probs=138.4

Q ss_pred             CCCCeEEE-EeCCCeEEEEECCCC----cEEEEeC------C-CCCceEEEEEeCCCCeEEEeeCC------CceeEEEE
Q 042434          277 PDDTKLLT-CGNAEVLKLWDVETG----ICKHTFG------D-HGFIVSSCAWFPDSKRLVCGSSD------TEKGIFMC  338 (517)
Q Consensus       277 ~~~~~l~s-~~~dg~i~iwd~~~~----~~~~~~~------~-~~~~v~~i~~~~~~~~l~~~~~d------~~v~i~~~  338 (517)
                      +++++|+. +..++.|.++|+.+.    +..+++.      . .......+...|+| .++++..+      |.  +.++
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~--v~vl  169 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGG--ILML  169 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCE--EEEE
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCe--EEEE
Confidence            77777765 555789999999765    5666663      1 12245667889999 66665444      44  9999


Q ss_pred             eCCC-CeeEeeeCcCC--CceEEEEEccCCCEEEEEe-------------------CCCcEEEEECCCce-EEeeccC--
Q 042434          339 DCDG-NEIKAWRGTRI--PKVLDLAVTPDGENLISVL-------------------SDKDIRILNLGTYA-ERVISEE--  393 (517)
Q Consensus       339 ~~~~-~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~-------------------~dg~i~i~d~~~~~-~~~~~~~--  393 (517)
                      |..+ +.+..+.....  ..-..+.|+|+++.+++..                   .+..|.+||+.+++ ...+...  
T Consensus       170 D~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~  249 (462)
T 2ece_A          170 DHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEE  249 (462)
T ss_dssp             CTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTT
T ss_pred             ECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCC
Confidence            9885 44555653322  2345688899999888875                   36899999999876 2223222  


Q ss_pred             -CCeeEEEE--cCCCCEEEEEeC------CCeEEEEEcCCC-CccceEE--eCcc-------------cCceEEEeecCC
Q 042434          394 -HPITSLSV--SVDCKNFIVNLN------SQEIHMWDVAGK-WEKPFKY--TGHS-------------QNKYVIRSCFGG  448 (517)
Q Consensus       394 -~~i~~~~~--s~~~~~l~~~~~------d~~i~~~d~~~~-~~~~~~~--~~~~-------------~~~~~i~~~~~s  448 (517)
                       .....+.|  +|+++++++++.      +++|.+|....+ +.....+  ....             ........+.+|
T Consensus       250 g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS  329 (462)
T 2ece_A          250 NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDIS  329 (462)
T ss_dssp             EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEEC
T ss_pred             CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEEC
Confidence             23444545  999999888774      567876655332 1111111  0000             000113344459


Q ss_pred             CCCcEEEEecC-CCcEEEEecCC---CceeEEecCCC--------------CCeeEEEecCCCCcEEEEee
Q 042434          449 LDGTFIASGSE-NSQIYIWNRRN---SKPIEILSGHS--------------MTVNCVSWNPKRPKMLASAS  501 (517)
Q Consensus       449 ~~~~~l~~~~~-dg~i~iwd~~~---~~~~~~~~~h~--------------~~v~~v~~~~~~~~~l~s~~  501 (517)
                      +||++|+++.. .+.|.+||+..   .+++..+....              +.-..++++|+|. +|+.+.
T Consensus       330 ~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk-~LyVaN  399 (462)
T 2ece_A          330 LDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGR-RVYVTN  399 (462)
T ss_dssp             TTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSS-EEEEEC
T ss_pred             CCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCC-EEEEEc
Confidence            99999988776 57999999863   35555554210              1358899999995 555544

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.05  E-value=1.5e-08  Score=95.16  Aligned_cols=223  Identities=14%  Similarity=0.090  Sum_probs=140.4

Q ss_pred             cccCcEEEEEECCCCCEEEEeeC-----CCcEEEEEecCCCeeeEEEEecc------CCCCEEEEEECCCCCeE-EEEe-
Q 042434          220 EHKNEVWFVQFSNNGEYLASSSS-----DCSAIIWKVLEDSKLTLKHTLRS------HQNPVSFVAWSPDDTKL-LTCG-  286 (517)
Q Consensus       220 ~h~~~v~~~~~s~~~~~l~t~~~-----dg~i~iw~~~~~~~~~~~~~~~~------h~~~v~~l~~s~~~~~l-~s~~-  286 (517)
                      +|-..+..++++++|+++++-..     ++.|.+||..++.   ....+..      +...+..+++++++..+ ++.. 
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~---~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~  140 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQ---LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPA  140 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTE---EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECC
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCe---EEEEEECChhhcccccccceEEEecCCCEEEEEcCc
Confidence            46678999999999986665443     5789999987653   2233321      23456889999865454 5544 


Q ss_pred             --CCCeEEEEECCCCcEEEEeCCCCCceE-EEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEcc
Q 042434          287 --NAEVLKLWDVETGICKHTFGDHGFIVS-SCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTP  363 (517)
Q Consensus       287 --~dg~i~iwd~~~~~~~~~~~~~~~~v~-~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~  363 (517)
                        .++.|.+||+.+++..+.+..|..... ...+.++|..+.+.+.++.  +..|.              ..+..++++|
T Consensus       141 ~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~--~~~~~--------------~~~~gia~s~  204 (343)
T 2qe8_A          141 PDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGT--VIRPH--------------LGVNGIVLDA  204 (343)
T ss_dssp             SGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSC--EECCC--------------CCEEEEEECT
T ss_pred             cCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCc--eecee--------------cccceeEecc
Confidence              578999999999988777655422110 1334556666666666766  32221              1467899999


Q ss_pred             CCCEEEEEeCCC-cEEEEECCC---ce---------EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccce
Q 042434          364 DGENLISVLSDK-DIRILNLGT---YA---------ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPF  430 (517)
Q Consensus       364 ~~~~l~~~~~dg-~i~i~d~~~---~~---------~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~  430 (517)
                      +++.++++...+ .+..++...   ..         ............++++++|..+++...++.|.+||..++ ....
T Consensus       205 dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G-~~~~  283 (343)
T 2qe8_A          205 ENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADR-AYKL  283 (343)
T ss_dssp             TSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTT-EEEE
T ss_pred             CCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCC-CEEE
Confidence            999888887766 555555321   00         011223345678999999999999889999999998333 2221


Q ss_pred             EEeCcccCceEEEeecCCCCCcEEEEecCCCcEE
Q 042434          431 KYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIY  464 (517)
Q Consensus       431 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~  464 (517)
                      .... .. ......+++.++|.++++.+..+.+.
T Consensus       284 ~~~~-~~-~~~p~~va~~~~g~l~v~~~~~~~~~  315 (343)
T 2qe8_A          284 LVTD-EK-LSWTDSFNFGSDGYLYFDCNQLHHSA  315 (343)
T ss_dssp             EEEC-GG-GSCEEEEEECTTSCEEEEECCGGGSG
T ss_pred             EEEC-Cc-eecCCeeEECCCCcEEEEeCcccccc
Confidence            2211 11 11234445567777777766544443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.01  E-value=1.1e-06  Score=92.49  Aligned_cols=275  Identities=8%  Similarity=0.065  Sum_probs=173.6

Q ss_pred             EEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEE
Q 042434          225 VWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHT  304 (517)
Q Consensus       225 v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~  304 (517)
                      |.++...++|.+.+ |+.++-+..|+..++. ..... ...+...|.++...+++.+.+ ++.++-+..||..+++....
T Consensus       175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~-~~~~~-~~~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~  250 (795)
T 4a2l_A          175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKT-FEKVI-PILGTKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNY  250 (795)
T ss_dssp             CEEEEEEETTEEEE-EESSSCEEEEETTTCC-EEECC-----CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEE
T ss_pred             eEEEEECCCCCEEE-EECCCCEEEEeCCCCe-EEEec-CCCCCCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEe
Confidence            88888888886555 5555458888875442 11110 112356789988887776555 44444588999887765443


Q ss_pred             eCC-------CCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCc-------CCCceEEEEEccCCCEEEE
Q 042434          305 FGD-------HGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGT-------RIPKVLDLAVTPDGENLIS  370 (517)
Q Consensus       305 ~~~-------~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~  370 (517)
                      ...       ....|.++...++|...+ |+.+|   ++.++..+.....+...       ....|.++...++|. +.+
T Consensus       251 ~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~G---l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWi  325 (795)
T 4a2l_A          251 LHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFND---LNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWL  325 (795)
T ss_dssp             CCCTTCTTSCSCSBEEEEEECTTSCEEE-EESSC---EEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEE
T ss_pred             ecCCCCccccCCCeEEEEEEcCCCCEEE-EeCCh---hheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEE
Confidence            221       146799999888887554 44455   88899887666554321       234689999998886 455


Q ss_pred             EeCCCcEEEEECCCceEEeec--------cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcc------
Q 042434          371 VLSDKDIRILNLGTYAERVIS--------EEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHS------  436 (517)
Q Consensus       371 ~~~dg~i~i~d~~~~~~~~~~--------~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~------  436 (517)
                      |+.++-|..|+..+.......        ....|.++...++|. +.+|+.++.|..||..+..  ...+....      
T Consensus       326 gt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~--~~~~~~~~~~~~~~  402 (795)
T 4a2l_A          326 GTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQR--FTSYTLQEDESARG  402 (795)
T ss_dssp             EESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCC--EEEECCC------C
T ss_pred             EECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCc--EEEEecCCCCcccC
Confidence            677777999987665421111        234688888888776 5567778789999976541  11221100      


Q ss_pred             cCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEec----CCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCC
Q 042434          437 QNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILS----GHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPC  512 (517)
Q Consensus       437 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~  512 (517)
                      .....+.+++..++|+.|..|+.++-|..||..+++......    .+...|.++...+++ .+. .|+.+ .+.+|+..
T Consensus       403 l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~lw-igt~~-Gl~~~~~~  479 (795)
T 4a2l_A          403 IGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEG-NLW-LGTLS-ALVRFNPE  479 (795)
T ss_dssp             CSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSS-CEE-EEESS-CEEEEETT
T ss_pred             CCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCC-CEE-EEecC-ceeEEeCC
Confidence            011234455546778756777777779999988876443322    134679999998888 444 44444 47788876


Q ss_pred             CC
Q 042434          513 QS  514 (517)
Q Consensus       513 ~~  514 (517)
                      ++
T Consensus       480 ~~  481 (795)
T 4a2l_A          480 QR  481 (795)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.01  E-value=3.6e-09  Score=98.80  Aligned_cols=256  Identities=16%  Similarity=0.129  Sum_probs=153.4

Q ss_pred             EEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCC
Q 042434          228 VQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGD  307 (517)
Q Consensus       228 ~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  307 (517)
                      +....+| .|..++.++.|..|| .++..   ......+...+.++...+++. +..++.+  +..+|. +++....+..
T Consensus        25 ~~~d~~g-~l~v~t~~~~l~~~d-~~g~~---~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~   95 (330)
T 3hxj_A           25 PILAKNG-TIYLGSSNKNLYAIN-TDGSV---KWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDT   95 (330)
T ss_dssp             CEECTTS-CEECSSTTTTTEEEC-TTSCE---EESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC
T ss_pred             ceEccCC-eEEEEcCCCEEEEEC-CCCcE---EEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEEC
Confidence            3444455 466677788899998 55532   222333334456777777765 4444444  888886 6655444432


Q ss_pred             CCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-
Q 042434          308 HGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-  386 (517)
Q Consensus       308 ~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-  386 (517)
                      ...........  +..+.+++.++.  ++.++..+......... ...+.++...+++. +++++.++.|..+|.. +. 
T Consensus        96 ~~~~~~~~~~~--~~~l~v~t~~~~--l~~~d~~g~~~~~~~~~-~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~  168 (330)
T 3hxj_A           96 KKAIVSDFTIF--EDILYVTSMDGH--LYAINTDGTEKWRFKTK-KAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTE  168 (330)
T ss_dssp             -----CCEEEE--TTEEEEECTTSE--EEEECTTSCEEEEEECS-SCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCE
T ss_pred             CCCcccCceEE--CCEEEEEecCCE--EEEEcCCCCEEEEEcCC-CceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCE
Confidence            22222233333  556777887777  88889885544433332 23455666776776 5667788999999998 44 


Q ss_pred             E-EeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEE
Q 042434          387 E-RVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYI  465 (517)
Q Consensus       387 ~-~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i  465 (517)
                      . ........+.++...+++..++ ++  +.+..+| .++ ...........   .+......++|. |..++.++.|..
T Consensus       169 ~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g-~~~~~~~~~~~---~~~~~~~~~~g~-l~v~t~~~gl~~  239 (330)
T 3hxj_A          169 KWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDG-TEKWNFYAGYW---TVTRPAISEDGT-IYVTSLDGHLYA  239 (330)
T ss_dssp             EEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTS-CEEEEECCSSC---CCSCCEECTTSC-EEEEETTTEEEE
T ss_pred             eEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCC-cEEEEEccCCc---ceeceEECCCCe-EEEEcCCCeEEE
Confidence            2 2223344566777777776544 44  8899999 443 33333332221   133333355664 555667788888


Q ss_pred             EecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCC
Q 042434          466 WNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGP  511 (517)
Q Consensus       466 wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~  511 (517)
                      +|. +++.+..+......+.++...+++  .|..++.+|.|..++.
T Consensus       240 ~~~-~g~~~~~~~~~~~~~~~~~~~~~g--~l~v~t~~ggl~~~d~  282 (330)
T 3hxj_A          240 INP-DGTEKWRFKTGKRIESSPVIGNTD--TIYFGSYDGHLYAINP  282 (330)
T ss_dssp             ECT-TSCEEEEEECSSCCCSCCEECTTS--CEEEECTTCEEEEECT
T ss_pred             ECC-CCCEeEEeeCCCCccccceEcCCC--eEEEecCCCCEEEECC
Confidence            884 566666666555555666776666  4667888888999986

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.99  E-value=8.5e-08  Score=93.53  Aligned_cols=236  Identities=10%  Similarity=0.035  Sum_probs=156.9

Q ss_pred             CCCCEEEEeeC-CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEE-C-CCCCeEEEEe------------------CCCe
Q 042434          232 NNGEYLASSSS-DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAW-S-PDDTKLLTCG------------------NAEV  290 (517)
Q Consensus       232 ~~~~~l~t~~~-dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~-s-~~~~~l~s~~------------------~dg~  290 (517)
                      +||+++..... ++.|.+.|+.+.+....+ .+. .......+++ + |+++++++++                  .++.
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii-~ip-~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~  176 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAIL-EIP-NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV  176 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEE-ECS-SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEE-eCC-CCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence            47888877665 556999999765333222 332 2345888898 5 9999998884                  3458


Q ss_pred             EEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCc---------------e---------------------e
Q 042434          291 LKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTE---------------K---------------------G  334 (517)
Q Consensus       291 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~---------------v---------------------~  334 (517)
                      +.+.|.++.+...++.-.. ....++++|+|+++++++.+..               +                     .
T Consensus       177 vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~  255 (595)
T 1fwx_A          177 FTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG  255 (595)
T ss_dssp             EEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred             EEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECc
Confidence            9999999998888775333 3567889999999999886641               0                     1


Q ss_pred             EEEEeCCC---Ce-eEeeeCcCCCceEEEEEccCCCEEEEEe-CCCcEEEEECCCce-------------EEeeccCCCe
Q 042434          335 IFMCDCDG---NE-IKAWRGTRIPKVLDLAVTPDGENLISVL-SDKDIRILNLGTYA-------------ERVISEEHPI  396 (517)
Q Consensus       335 i~~~~~~~---~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~-------------~~~~~~~~~i  396 (517)
                      |.+.|...   .. +..+....  ...++.++|||+++++++ .+.+|.++|+.+.+             ..........
T Consensus       256 V~VID~~~~~~~~~~~~Ipvg~--~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP  333 (595)
T 1fwx_A          256 VKVVDGRKEASSLFTRYIPIAN--NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGP  333 (595)
T ss_dssp             EEEEECSGGGCCSSEEEEEEES--SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCE
T ss_pred             EEEEeCcccCCceeEEEEecCC--CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCc
Confidence            34455543   12 22222222  456799999999877665 57899999998652             2344455678


Q ss_pred             eEEEEcCCCCEEEEEeCCCeEEEEEcCCC---------CccceEEeCcccCceEE--EeecCCCCCcEEEEecC---CCc
Q 042434          397 TSLSVSVDCKNFIVNLNSQEIHMWDVAGK---------WEKPFKYTGHSQNKYVI--RSCFGGLDGTFIASGSE---NSQ  462 (517)
Q Consensus       397 ~~~~~s~~~~~l~~~~~d~~i~~~d~~~~---------~~~~~~~~~~~~~~~~i--~~~~~s~~~~~l~~~~~---dg~  462 (517)
                      ..++|+|+|..+++...++.|..||+...         ...+.++..+-+.....  .....+|||++|+++..   |+.
T Consensus       334 ~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~  413 (595)
T 1fwx_A          334 LHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRF  413 (595)
T ss_dssp             EEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSS
T ss_pred             ceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcccc
Confidence            89999999944555667999999998651         23444555443321111  12245899999998754   332


Q ss_pred             ----------EEEEecCCCc
Q 042434          463 ----------IYIWNRRNSK  472 (517)
Q Consensus       463 ----------i~iwd~~~~~  472 (517)
                                -.++|+..++
T Consensus       414 ~~~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          414 LNVGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             CCCCSSCCEEEEEEECSSSS
T ss_pred             ccCCCCCCCcceEEEcCCCc
Confidence                      1788986554

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.98  E-value=1.5e-07  Score=83.22  Aligned_cols=208  Identities=8%  Similarity=-0.039  Sum_probs=132.4

Q ss_pred             cEEEEeCCCC--CceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCee-EeeeCcCCCceEEEEEccCCCEEE-EEeCCC
Q 042434          300 ICKHTFGDHG--FIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEI-KAWRGTRIPKVLDLAVTPDGENLI-SVLSDK  375 (517)
Q Consensus       300 ~~~~~~~~~~--~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg  375 (517)
                      +.+.++ .|.  .....+.|++++..+++.+..+.-.|..+|..+..+ .............+++.  +..++ +.-.++
T Consensus        10 ~vv~~~-p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~   86 (266)
T 2iwa_A           10 EVLNEF-PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKN   86 (266)
T ss_dssp             EEEEEE-ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCS
T ss_pred             eEEEEE-ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCC
Confidence            445555 343  335789999987555555543333499999986544 44332222233445554  44554 444678


Q ss_pred             cEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCccc--CceEEEeecCCCCCc
Q 042434          376 DIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQ--NKYVIRSCFGGLDGT  452 (517)
Q Consensus       376 ~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~--~~~~i~~~~~s~~~~  452 (517)
                      .+.++|..+.+ ...+... ......+++||+.++++..++.|.++|..+. .....+.-...  ....+.-+.+. +|.
T Consensus        87 ~v~viD~~t~~v~~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~-~v~~~I~Vg~~~~p~~~~nele~~-dg~  163 (266)
T 2iwa_A           87 IGFIYDRRTLSNIKNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTF-KLIKKHNVKYNGHRVIRLNELEYI-NGE  163 (266)
T ss_dssp             EEEEEETTTTEEEEEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTC-CEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred             EEEEEECCCCcEEEEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCC-cEEEEEEECCCCcccccceeEEEE-CCE
Confidence            99999999887 3333222 1223446678888888878899999999876 33444332211  11111222223 676


Q ss_pred             EEEEecCCCcEEEEecCCCceeEEecCC-------------CCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434          453 FIASGSENSQIYIWNRRNSKPIEILSGH-------------SMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ  513 (517)
Q Consensus       453 ~l~~~~~dg~i~iwd~~~~~~~~~~~~h-------------~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~  513 (517)
                      ..+....++.|.+.|..+++.+..+...             ....+.++|+|++..+++++...+.|.+-++..
T Consensus       164 lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          164 VWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             EEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred             EEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence            6666556789999999999998888632             135689999999877888888889888877653

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.98  E-value=2.8e-06  Score=89.35  Aligned_cols=278  Identities=8%  Similarity=0.004  Sum_probs=171.9

Q ss_pred             ccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEe-----ccCCCCEEEEEECCCCCeEEEEeCCCeEEEEE
Q 042434          221 HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTL-----RSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWD  295 (517)
Q Consensus       221 h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~-----~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd  295 (517)
                      +...|.++...++|.+.+ |+.++-+.+|+..++ .......-     .-....|.++...++|.+.+ |+.+ -|.+||
T Consensus       213 ~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~-~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~  288 (795)
T 4a2l_A          213 GTKQIQAILQQSPTRIWV-ATEGAGLFLINPKTK-EIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYH  288 (795)
T ss_dssp             -CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTT-EEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEE
T ss_pred             CCCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCC-eEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEc
Confidence            356788998888877555 444434888887543 22111100     01135699999998887555 4445 588999


Q ss_pred             CCCCcEEEEeCC-------CCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeC------cCCCceEEEEEc
Q 042434          296 VETGICKHTFGD-------HGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRG------TRIPKVLDLAVT  362 (517)
Q Consensus       296 ~~~~~~~~~~~~-------~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~------~~~~~i~~~~~~  362 (517)
                      ..++........       ....|.++...++|... .|+.++-  +..++........+..      .....|.++...
T Consensus       289 ~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-igt~~~G--l~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d  365 (795)
T 4a2l_A          289 EGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMW-LGTYFGG--LNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVED  365 (795)
T ss_dssp             TTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEE-EEESSSC--EEEECGGGGSSEEECCCTTSSSCSCSSEEEEEEC
T ss_pred             CCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEE-EEECCCC--eEEeCCCcccceEEcCCCCCCCCCCCeeEEEEEC
Confidence            887765443211       24679999998888654 4555444  8888876554433321      123468899988


Q ss_pred             cCCCEEEEEeCCCcEEEEECCCceEEeec----------cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEE
Q 042434          363 PDGENLISVLSDKDIRILNLGTYAERVIS----------EEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKY  432 (517)
Q Consensus       363 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----------~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~  432 (517)
                      ++|. +.+|+.++-|..||..+.......          ....|.++...++++.+.+|+.++.+..||..++.  ...+
T Consensus       366 ~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~--~~~~  442 (795)
T 4a2l_A          366 KDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ--VENF  442 (795)
T ss_dssp             TTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCC--EEEE
T ss_pred             CCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCc--EEEe
Confidence            8876 455777777999998876522221          23568888888888867778887889999987642  2222


Q ss_pred             eCcc--cCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecC------CCCCeeEEEecCCCCcEEEEeeCCC
Q 042434          433 TGHS--QNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSG------HSMTVNCVSWNPKRPKMLASASDDH  504 (517)
Q Consensus       433 ~~~~--~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------h~~~v~~v~~~~~~~~~l~s~~~dg  504 (517)
                      ....  .....+.++...++|.+.+.. .+ -|.+||..+++.......      +...|.++...++| .+.+ |+.+ 
T Consensus       443 ~~~~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g-~lWi-gt~~-  517 (795)
T 4a2l_A          443 NQRNSQLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHK-RLWI-GGEE-  517 (795)
T ss_dssp             CTTTSCCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTC-CEEE-EESS-
T ss_pred             ecCCCCcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCC-CEEE-EeCC-
Confidence            2100  111224444446677755544 44 488999887754332211      23678999999988 4444 4444 


Q ss_pred             cEEEeCCCC
Q 042434          505 TIRIWGPCQ  513 (517)
Q Consensus       505 ~v~iw~~~~  513 (517)
                      -|..|+..+
T Consensus       518 Gl~~~~~~~  526 (795)
T 4a2l_A          518 GLSVFKQEG  526 (795)
T ss_dssp             CEEEEEEET
T ss_pred             ceEEEeCCC
Confidence            477777644

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.96  E-value=5.1e-06  Score=76.31  Aligned_cols=234  Identities=9%  Similarity=-0.004  Sum_probs=141.2

Q ss_pred             eEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEE
Q 042434          258 TLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM  337 (517)
Q Consensus       258 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~  337 (517)
                      +....+... .....++|+++++++++-..++.|..||...+ ....+ .....+..+++.++++++++.......+++.
T Consensus        23 ~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~-~~~~~p~gia~~~dG~l~vad~~~~~~~v~~   99 (306)
T 2p4o_A           23 KIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHA-TVEGKVSGLAFTSNGDLVATGWNADSIPVVS   99 (306)
T ss_dssp             EEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEE-ECSSEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             eEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEE-eCCCCceeEEEcCCCcEEEEeccCCcceEEE
Confidence            344444332 56788999999987777667899999998653 33333 2345688999999999666554433334777


Q ss_pred             EeCCCCeeEeeeC-cCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEe--------e--ccCCCeeEEEEcCC
Q 042434          338 CDCDGNEIKAWRG-TRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERV--------I--SEEHPITSLSVSVD  404 (517)
Q Consensus       338 ~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~--------~--~~~~~i~~~~~s~~  404 (517)
                      ++..+..+..+.. ........++..+++..+++-..++.|+++|..+..  ...        .  ........+  +++
T Consensus       100 ~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~d  177 (306)
T 2p4o_A          100 LVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRF  177 (306)
T ss_dssp             EECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEE
T ss_pred             EcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcC
Confidence            7766544433322 122233455555555444444468899999987643  110        0  111234445  788


Q ss_pred             CCEEEEE-eCCCeEEEEEcCCCCc--cceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeE--EecC
Q 042434          405 CKNFIVN-LNSQEIHMWDVAGKWE--KPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIE--ILSG  479 (517)
Q Consensus       405 ~~~l~~~-~~d~~i~~~d~~~~~~--~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~  479 (517)
                      ++.++++ +..+.|..|++.....  ....+....    ....++++++|++.++....+.|.++|.. |+...  .+..
T Consensus       178 g~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~----~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~  252 (306)
T 2p4o_A          178 GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQT----NIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQ  252 (306)
T ss_dssp             TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESC----CCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGG
T ss_pred             CCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccC----CCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeeccc
Confidence            8766655 4578999999864211  111111110    11223347889887777778899999975 66532  3443


Q ss_pred             CCCCeeEEEec---CCCCcEEEEee
Q 042434          480 HSMTVNCVSWN---PKRPKMLASAS  501 (517)
Q Consensus       480 h~~~v~~v~~~---~~~~~~l~s~~  501 (517)
                      .....++++|.   |++..++++..
T Consensus       253 ~~~~p~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          253 GVIGSTAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             TCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             ccCCceEEEEecccCCCCEEEEECC
Confidence            34568999998   88745555544

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.91  E-value=6.9e-07  Score=82.89  Aligned_cols=240  Identities=9%  Similarity=-0.042  Sum_probs=143.9

Q ss_pred             CcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEecc-----------------CCCCEEEEEECC-CCCeEEE
Q 042434          223 NEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRS-----------------HQNPVSFVAWSP-DDTKLLT  284 (517)
Q Consensus       223 ~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~-----------------h~~~v~~l~~s~-~~~~l~s  284 (517)
                      ....+++|+++|++++++..++.|..|+..++. .........                 ....+..+++.+ +++ |+.
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v   96 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSG-FVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYI   96 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTTC-EEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEE
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCc-eEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEE
Confidence            455678899999978888888999999875432 222111000                 013578999998 554 555


Q ss_pred             EeCCCeEEEEECCCCcEEEEeC---C-CCCceEEEEEeC-CCCeEEEeeCC---------------CceeEEEEeCCCCe
Q 042434          285 CGNAEVLKLWDVETGICKHTFG---D-HGFIVSSCAWFP-DSKRLVCGSSD---------------TEKGIFMCDCDGNE  344 (517)
Q Consensus       285 ~~~dg~i~iwd~~~~~~~~~~~---~-~~~~v~~i~~~~-~~~~l~~~~~d---------------~~v~i~~~~~~~~~  344 (517)
                      +...+.+..+|..++.......   + .......+++.+ +|+..++....               ..-.++.++..+..
T Consensus        97 ~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~  176 (322)
T 2fp8_A           97 VDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE  176 (322)
T ss_dssp             EETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred             EECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence            5455568888877654322111   1 123467899999 88766664321               12348899987655


Q ss_pred             eEeeeCcCCCceEEEEEccCCCEEEEE-eCCCcEEEEECCCc---e-EEeeccCCCeeEEEEcCCCCEEEEEeC------
Q 042434          345 IKAWRGTRIPKVLDLAVTPDGENLISV-LSDKDIRILNLGTY---A-ERVISEEHPITSLSVSVDCKNFIVNLN------  413 (517)
Q Consensus       345 ~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~---~-~~~~~~~~~i~~~~~s~~~~~l~~~~~------  413 (517)
                      ....... ......++++++++.++++ +..+.|.+|++...   . ........ ...++++++|+.+++...      
T Consensus       177 ~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~  254 (322)
T 2fp8_A          177 TTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNM  254 (322)
T ss_dssp             EEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSST
T ss_pred             EEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccc
Confidence            5433221 1245679999999976655 55689999998752   2 11112223 788999999987666544      


Q ss_pred             ----CCeEEEEEcCCCCccceEEeCcccC-ceEEEeecCCCCCcEEEEecCCCcEEEEecC
Q 042434          414 ----SQEIHMWDVAGKWEKPFKYTGHSQN-KYVIRSCFGGLDGTFIASGSENSQIYIWNRR  469 (517)
Q Consensus       414 ----d~~i~~~d~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~  469 (517)
                          .+.|..+|...  .....+...... ...+..+.. .++.+.++...++.|.++++.
T Consensus       255 ~~~~~~~v~~~d~~G--~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~  312 (322)
T 2fp8_A          255 HGRVDPKGIKFDEFG--NILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYD  312 (322)
T ss_dssp             TSCEEEEEEEECTTS--CEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred             cCCCccEEEEECCCC--CEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence                46688888653  333333322110 011112221 356666666667788888765

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.90  E-value=4e-06  Score=75.38  Aligned_cols=205  Identities=11%  Similarity=0.015  Sum_probs=129.5

Q ss_pred             cCcEEEEEECCCCCEEE-EeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEE-EEeCCCeEEEEECCCC
Q 042434          222 KNEVWFVQFSNNGEYLA-SSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLL-TCGNAEVLKLWDVETG  299 (517)
Q Consensus       222 ~~~v~~~~~s~~~~~l~-t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~  299 (517)
                      ...+..++|++++..|+ +-..++.|..++......   .............+++++++..|+ +-...+.|.+++....
T Consensus        35 ~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~---~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~  111 (267)
T 1npe_A           35 AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP---TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT  111 (267)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC---EEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc---EEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCC
Confidence            35678999999665555 444578899999864422   122222335689999999765555 4455679999998654


Q ss_pred             cEEEEeCCCCCceEEEEEeCCCCeEEEeeCC-CceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEe-CCCcE
Q 042434          300 ICKHTFGDHGFIVSSCAWFPDSKRLVCGSSD-TEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVL-SDKDI  377 (517)
Q Consensus       300 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i  377 (517)
                      ...............++++|++..++.+... ..-+|+.++.++.....+..........+++++++..++.+. ..+.|
T Consensus       112 ~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I  191 (267)
T 1npe_A          112 QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRA  191 (267)
T ss_dssp             SCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             CEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEE
Confidence            3332332223567899999976666665543 122388888877554444333334678999999877665554 56789


Q ss_pred             EEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEE-eCCCeEEEEEcCCCCccceEE
Q 042434          378 RILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVN-LNSQEIHMWDVAGKWEKPFKY  432 (517)
Q Consensus       378 ~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~  432 (517)
                      .++|..... ............++..  +..++++ ...+.|..+|..++ .....+
T Consensus       192 ~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g-~~~~~i  245 (267)
T 1npe_A          192 ECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAIS-KEMDTF  245 (267)
T ss_dssp             EEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTT-EEEEEE
T ss_pred             EEEecCCCceEEEecCCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCC-CceEEE
Confidence            999998654 2222233344566654  4555554 45689999998765 333333

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.86  E-value=4.3e-06  Score=76.85  Aligned_cols=203  Identities=10%  Similarity=0.071  Sum_probs=125.9

Q ss_pred             cccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCC-C-
Q 042434          212 TETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNA-E-  289 (517)
Q Consensus       212 ~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-g-  289 (517)
                      .+.+..+..+ .....++|+++|+++++-..++.|..|+...  ....  .+ .....+..+++.++|+++++.... + 
T Consensus        22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g--~~~~--~~-~~~~~p~gia~~~dG~l~vad~~~~~~   95 (306)
T 2p4o_A           22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG--NQQI--HA-TVEGKVSGLAFTSNGDLVATGWNADSI   95 (306)
T ss_dssp             EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC--CEEE--EE-ECSSEEEEEEECTTSCEEEEEECTTSC
T ss_pred             ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCC--ceEE--EE-eCCCCceeEEEcCCCcEEEEeccCCcc
Confidence            4455555432 5678999999999777766788898888753  2222  12 123568999999999866655432 2 


Q ss_pred             eEEEEECCCCcEEEEeCC-CCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEee--e--------CcCCCceEE
Q 042434          290 VLKLWDVETGICKHTFGD-HGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAW--R--------GTRIPKVLD  358 (517)
Q Consensus       290 ~i~iwd~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~--~--------~~~~~~i~~  358 (517)
                      .|..+|..+++....... .......++..+++..+++...++.  +|.+|..+.....+  .        .........
T Consensus        96 ~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~--i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~png  173 (306)
T 2p4o_A           96 PVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGA--IWLIDVVQPSGSIWLEHPMLARSNSESVFPAANG  173 (306)
T ss_dssp             EEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTE--EEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEE
T ss_pred             eEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCe--EEEEeCCCCcEeEEEECCccccccccCCCCcCCC
Confidence            477778778875433321 2223345555555544444445666  99999875322111  0        011123445


Q ss_pred             EEEccCCCEEEEEe-CCCcEEEEECCC-ce---EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 042434          359 LAVTPDGENLISVL-SDKDIRILNLGT-YA---ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAG  424 (517)
Q Consensus       359 ~~~~~~~~~l~~~~-~dg~i~i~d~~~-~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~  424 (517)
                      +  +++++.++++. ..+.|..||+.. +.   ............++++++|+.+++....+.|..+|..+
T Consensus       174 i--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G  242 (306)
T 2p4o_A          174 L--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR  242 (306)
T ss_dssp             E--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTC
T ss_pred             c--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCCC
Confidence            5  78887665554 567899999874 22   11222224567799999998877777788999999753

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.85  E-value=3.7e-07  Score=93.41  Aligned_cols=271  Identities=11%  Similarity=0.014  Sum_probs=159.2

Q ss_pred             CCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCC----------CE-EEEEECCCCCeEEEEeCCCeEEEEECCCCcEE
Q 042434          234 GEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQN----------PV-SFVAWSPDDTKLLTCGNAEVLKLWDVETGICK  302 (517)
Q Consensus       234 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~----------~v-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~  302 (517)
                      +..|+.++.++.|.-+|..+++..   -.+.....          .+ ..++.  ++..+++++.|+.|..+|..+|+.+
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~---W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~  140 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKEL---WRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAI  140 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEE---EEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhc---eEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEe
Confidence            456777777888999998777432   33322111          00 11122  3567888889999999999999988


Q ss_pred             EEeCCCC----CceEE-EEEeCCCCeEEEeeC------CCceeEEEEeCCC-CeeEeeeCcC---C--------------
Q 042434          303 HTFGDHG----FIVSS-CAWFPDSKRLVCGSS------DTEKGIFMCDCDG-NEIKAWRGTR---I--------------  353 (517)
Q Consensus       303 ~~~~~~~----~~v~~-i~~~~~~~~l~~~~~------d~~v~i~~~~~~~-~~~~~~~~~~---~--------------  353 (517)
                      ..+....    ..+.+ ...  .+..++++..      +|.  ++.+|..+ +.+-.+....   .              
T Consensus       141 W~~~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~--v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~  216 (668)
T 1kv9_A          141 WSQQTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGF--VSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKT  216 (668)
T ss_dssp             EEEECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCE--EEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTT
T ss_pred             eeeccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCE--EEEEECCCCcEEEEecccCCCCCcccccccccccccc
Confidence            7765321    11111 111  1335555543      355  88888764 4433332110   0              


Q ss_pred             -------------CceEEEEEccCCCEEEEEeCCC-------------------cEEEEECCCceE-Eeec---cC----
Q 042434          354 -------------PKVLDLAVTPDGENLISVLSDK-------------------DIRILNLGTYAE-RVIS---EE----  393 (517)
Q Consensus       354 -------------~~i~~~~~~~~~~~l~~~~~dg-------------------~i~i~d~~~~~~-~~~~---~~----  393 (517)
                                   .....+++.++...++.++.++                   .|..+|..+++. ....   +.    
T Consensus       217 ~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~  296 (668)
T 1kv9_A          217 WQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDF  296 (668)
T ss_dssp             CCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCC
T ss_pred             CCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccc
Confidence                         0112468888888888888766                   399999999882 2221   11    


Q ss_pred             ---CCeeEEEEcCCCC---EEEEEeCCCeEEEEEcCCCCccceEEeCccc---------CceEE----------------
Q 042434          394 ---HPITSLSVSVDCK---NFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQ---------NKYVI----------------  442 (517)
Q Consensus       394 ---~~i~~~~~s~~~~---~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~---------~~~~i----------------  442 (517)
                         .+.....+..+|+   .+++++.+|.++++|..++ +.+........         ....+                
T Consensus       297 ~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG-~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p  375 (668)
T 1kv9_A          297 TATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNG-KLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWP  375 (668)
T ss_dssp             CCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTC-CEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESS
T ss_pred             cCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCC-CEeccccccccccccccccccCCccccccccccCCeeEECC
Confidence               2233333334665   6888899999999998877 33311111000         00000                


Q ss_pred             --------EeecCCCCCcEEEE------------------------------------ecCCCcEEEEecCCCceeEEec
Q 042434          443 --------RSCFGGLDGTFIAS------------------------------------GSENSQIYIWNRRNSKPIEILS  478 (517)
Q Consensus       443 --------~~~~~s~~~~~l~~------------------------------------~~~dg~i~iwd~~~~~~~~~~~  478 (517)
                              ....++|+...++.                                    ...+|.|+.||..+|+.+....
T Consensus       376 ~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~  455 (668)
T 1kv9_A          376 SPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVP  455 (668)
T ss_dssp             CTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEE
T ss_pred             CCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEcc
Confidence                    00223444444433                                    1234889999999999888776


Q ss_pred             CCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434          479 GHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSE  516 (517)
Q Consensus       479 ~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~  516 (517)
                      .+. ......+...+ .+++.++.||.++.||..+++.
T Consensus       456 ~~~-~~~~~~~~t~g-g~vf~g~~dg~l~a~d~~tG~~  491 (668)
T 1kv9_A          456 YPT-HWNGGTLSTAG-NLVFQGTAAGQMHAYSADKGEA  491 (668)
T ss_dssp             ESS-SCCCCEEEETT-TEEEEECTTSEEEEEETTTCCE
T ss_pred             CCC-CCcCceeEeCC-CEEEEECCcccchhhhhhcChh
Confidence            432 33333344445 5788889999999999998874

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.81  E-value=3.2e-06  Score=74.71  Aligned_cols=201  Identities=11%  Similarity=0.029  Sum_probs=129.7

Q ss_pred             ccEEEeccccC--cEEEEEECCCCCEEEEeeC--CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEE-EEeC
Q 042434          213 ETVQILTEHKN--EVWFVQFSNNGEYLASSSS--DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLL-TCGN  287 (517)
Q Consensus       213 ~~~~~l~~h~~--~v~~~~~s~~~~~l~t~~~--dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~~~  287 (517)
                      +.+.++. |..  ....++|+|++.+.++.+.  ++.|.++|..+++....+. +..+ .....+++.  ++.|+ +.-.
T Consensus        10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~-l~~~-~fgeGi~~~--g~~lyv~t~~   84 (266)
T 2iwa_A           10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHK-MDDS-YFGEGLTLL--NEKLYQVVWL   84 (266)
T ss_dssp             EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEE-CCTT-CCEEEEEEE--TTEEEEEETT
T ss_pred             eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEe-cCCC-cceEEEEEe--CCEEEEEEec
Confidence            4455553 553  4689999998765555443  5799999998775432221 2222 122345554  44554 4456


Q ss_pred             CCeEEEEECCCCcEEEEeCCC-CCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCe-eEeeeCcC----CCceEEEEE
Q 042434          288 AEVLKLWDVETGICKHTFGDH-GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNE-IKAWRGTR----IPKVLDLAV  361 (517)
Q Consensus       288 dg~i~iwd~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~-~~~~~~~~----~~~i~~~~~  361 (517)
                      ++.+.++|..+++.+.++... ..   ...+++|++.++++..++.  ++.+|..+.. ...+....    ......+.+
T Consensus        85 ~~~v~viD~~t~~v~~~i~~g~~~---g~glt~Dg~~l~vs~gs~~--l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~  159 (266)
T 2iwa_A           85 KNIGFIYDRRTLSNIKNFTHQMKD---GWGLATDGKILYGSDGTSI--LYEIDPHTFKLIKKHNVKYNGHRVIRLNELEY  159 (266)
T ss_dssp             CSEEEEEETTTTEEEEEEECCSSS---CCEEEECSSSEEEECSSSE--EEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred             CCEEEEEECCCCcEEEEEECCCCC---eEEEEECCCEEEEECCCCe--EEEEECCCCcEEEEEEECCCCcccccceeEEE
Confidence            789999999999999888533 22   2335668888877665555  9999998744 33333221    123567788


Q ss_pred             ccCCCEEEEEeCCCcEEEEECCCce-EEeecc--------------CCCeeEEEEcCCCCEEEEEe-CCCeEEEEEcCC
Q 042434          362 TPDGENLISVLSDKDIRILNLGTYA-ERVISE--------------EHPITSLSVSVDCKNFIVNL-NSQEIHMWDVAG  424 (517)
Q Consensus       362 ~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~--------------~~~i~~~~~s~~~~~l~~~~-~d~~i~~~d~~~  424 (517)
                      . +|...+....++.|.+.|..+++ ...+..              ......++++|+++.+++++ ..+.+...++..
T Consensus       160 ~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          160 I-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             E-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred             E-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence            7 67555555568899999999987 222211              13568999999987666555 577888888754

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.81  E-value=3.2e-05  Score=71.67  Aligned_cols=276  Identities=7%  Similarity=-0.001  Sum_probs=153.4

Q ss_pred             cCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEe-ccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc
Q 042434          222 KNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTL-RSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI  300 (517)
Q Consensus       222 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~-~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~  300 (517)
                      ...+.++.|.+++..+++| .+|.| +...+.+..++....- ......+.++.|.+ +. ++.++.+|.|.. ....|+
T Consensus        35 ~~~~~~v~~~~~~~~~~~G-~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~~g~i~~-S~DgG~  109 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWLVG-VNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGEPPIMLH-TTDGGQ  109 (327)
T ss_dssp             SSCEEEEEESSSSCEEEEE-TTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEETTEEEE-ESSTTS
T ss_pred             CCcEEEEEECCCCcEEEEc-CCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEECCCeEEE-ECCCCC
Confidence            4579999998888777754 56654 3333334444433211 12245688999976 44 444456665443 223344


Q ss_pred             EEEEeC---CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcE
Q 042434          301 CKHTFG---DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDI  377 (517)
Q Consensus       301 ~~~~~~---~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  377 (517)
                      .-....   .+...+..+.+.+++..++++ .++.  ++.-.-.+..-..........+..+.+.+++..++++...+..
T Consensus       110 tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~--v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~  186 (327)
T 2xbg_A          110 SWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGA--IYRTKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFY  186 (327)
T ss_dssp             SCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCC--EEEESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEE
T ss_pred             CceECccccCCCCCeEEEEEECCCCEEEEe-CCcc--EEEEcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEE
Confidence            333222   223457788887777655554 4555  6554444544444443344568899999998877766544434


Q ss_pred             EEEEC--CCceEEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCc-ccCceEEEeecCCCCCcEE
Q 042434          378 RILNL--GTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGH-SQNKYVIRSCFGGLDGTFI  454 (517)
Q Consensus       378 ~i~d~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l  454 (517)
                      +-.|-  .+.+.........+..+.+.+++..+ +.+.+|.+++.+...+ ..-...... ......+..+.+.+++.++
T Consensus       187 ~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G-~tW~~~~~~~~~~~~~~~~v~~~~~~~~~  264 (327)
T 2xbg_A          187 STWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNS-ENWGELLSPLRRNSVGFLDLAYRTPNEVW  264 (327)
T ss_dssp             EEECTTCSSCEEEECCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEE-EEECCCBCTTSSCCSCEEEEEESSSSCEE
T ss_pred             EEeCCCCCceeECCCCCCCccceeEECCCCCEE-EEeCCceEEEecCCCC-CeeEeccCCcccCCcceEEEEecCCCEEE
Confidence            44443  23333333445678889999988755 4456777776642211 110001100 0011113333345677766


Q ss_pred             EEecCCCcEEEEecCCCceeEEec---CCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCC
Q 042434          455 ASGSENSQIYIWNRRNSKPIEILS---GHSMTVNCVSWNPKRPKMLASASDDHTIRIWGP  511 (517)
Q Consensus       455 ~~~~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~  511 (517)
                      +++. +|.| .+....|+.-..+.   .+...+.++.|.+++  .++.++.+|.|.-++-
T Consensus       265 ~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~--~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          265 LAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD--QGFILGQKGILLRYVT  320 (327)
T ss_dssp             EEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT--EEEEECSTTEEEEECC
T ss_pred             EEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC--ceEEEcCCceEEEEcC
Confidence            6654 6766 34445555444443   234568899997555  4777788998877764

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.80  E-value=2.9e-07  Score=94.31  Aligned_cols=271  Identities=10%  Similarity=0.015  Sum_probs=150.0

Q ss_pred             EEEECC-CCCEEEEeeCCC-----------cEEEEEecCCCeeeEEEEe-ccCCCCEEEEEECCCCCeEEEEeC-CCeEE
Q 042434          227 FVQFSN-NGEYLASSSSDC-----------SAIIWKVLEDSKLTLKHTL-RSHQNPVSFVAWSPDDTKLLTCGN-AEVLK  292 (517)
Q Consensus       227 ~~~~s~-~~~~l~t~~~dg-----------~i~iw~~~~~~~~~~~~~~-~~h~~~v~~l~~s~~~~~l~s~~~-dg~i~  292 (517)
                      ++++.| +|+.++.|+.+.           .+.+||..++. +.....+ ..+.....++++.+++..+++|+. +..+.
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~-w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~  268 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGI-VSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS  268 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCC-BCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCc-EEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceE
Confidence            456667 888888887543           57888887653 2222222 223334456788889999999985 45899


Q ss_pred             EEECCCCcEEEEeCCCCC-ceEEEEEeCCCCeEEEee-CCCc---eeEEEEeCCCCeeEeeeCcCCCce----EEEEEcc
Q 042434          293 LWDVETGICKHTFGDHGF-IVSSCAWFPDSKRLVCGS-SDTE---KGIFMCDCDGNEIKAWRGTRIPKV----LDLAVTP  363 (517)
Q Consensus       293 iwd~~~~~~~~~~~~~~~-~v~~i~~~~~~~~l~~~~-~d~~---v~i~~~~~~~~~~~~~~~~~~~~i----~~~~~~~  363 (517)
                      +||..+++....-..+.. .-.+++..++++.++.|+ .++.   -.++.||.....-.........+.    ....+..
T Consensus       269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~  348 (656)
T 1k3i_A          269 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS  348 (656)
T ss_dssp             EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred             EecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec
Confidence            999988765443222211 223455667999999998 3421   238889987765444311000000    0011223


Q ss_pred             CCCEEEEEeCC---------CcEEEEECCCceEEe-ec-c---------CCCeeEEEEc-CCCCEEEEEeCCC-------
Q 042434          364 DGENLISVLSD---------KDIRILNLGTYAERV-IS-E---------EHPITSLSVS-VDCKNFIVNLNSQ-------  415 (517)
Q Consensus       364 ~~~~l~~~~~d---------g~i~i~d~~~~~~~~-~~-~---------~~~i~~~~~s-~~~~~l~~~~~d~-------  415 (517)
                      ++..++.++.+         ..+..||..+..... .. .         .....++.+. .+++.+++|+.++       
T Consensus       349 ~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~  428 (656)
T 1k3i_A          349 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDAT  428 (656)
T ss_dssp             TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCC
T ss_pred             CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcC
Confidence            45555555444         356788887665111 11 0         1112334443 3677777777432       


Q ss_pred             ----eEEEEEcCCCCccceEEe-Cc-ccCceEEEeecCCCCCcEEEEecCC-----------CcEEEEecCCCceeE--E
Q 042434          416 ----EIHMWDVAGKWEKPFKYT-GH-SQNKYVIRSCFGGLDGTFIASGSEN-----------SQIYIWNRRNSKPIE--I  476 (517)
Q Consensus       416 ----~i~~~d~~~~~~~~~~~~-~~-~~~~~~i~~~~~s~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~--~  476 (517)
                          .+.+||..+. .- .... .. ..... ...+..-++|++++.|+.+           ..+.+||..+.+-..  .
T Consensus       429 ~~~~~v~~yd~~~~-~W-~~~~~~~mp~~R~-~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~  505 (656)
T 1k3i_A          429 TNAHIITLGEPGTS-PN-TVFASNGLYFART-FHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNP  505 (656)
T ss_dssp             CCEEEEECCSTTSC-CE-EEECTTCCSSCCB-SCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCC
T ss_pred             CcceEEEcCCCCCC-Ce-eEEccCCCCCCcc-cCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCC
Confidence                5777887553 11 1111 01 11111 1111224789999999864           468999988765322  2


Q ss_pred             ecCCCCCeeEEEecCCCCcEEEEeeC
Q 042434          477 LSGHSMTVNCVSWNPKRPKMLASASD  502 (517)
Q Consensus       477 ~~~h~~~v~~v~~~~~~~~~l~s~~~  502 (517)
                      +...........+.|++ ++++.||.
T Consensus       506 ~~~~R~~hs~a~ll~dg-~v~v~GG~  530 (656)
T 1k3i_A          506 NSIVRVYHSISLLLPDG-RVFNGGGG  530 (656)
T ss_dssp             CSSCCCTTEEEEECTTS-CEEEEECC
T ss_pred             CCCccccccHhhcCCCc-EEEecCCC
Confidence            22222233345567888 78888885

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.78  E-value=2.2e-06  Score=74.74  Aligned_cols=193  Identities=9%  Similarity=0.113  Sum_probs=121.0

Q ss_pred             EEEEeCCCC--CceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCee-EeeeCcCCCceEEEEEccCCCEEEEEe-CCCc
Q 042434          301 CKHTFGDHG--FIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEI-KAWRGTRIPKVLDLAVTPDGENLISVL-SDKD  376 (517)
Q Consensus       301 ~~~~~~~~~--~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~  376 (517)
                      .+.++ .|.  .-...+.|+ ++.++.+++.+|.-.|..+|..+..+ .......  ......+.+++..++... .++.
T Consensus        33 vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~--~~FgeGit~~g~~ly~ltw~~~~  108 (262)
T 3nol_A           33 IVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK--RYFGEGISDWKDKIVGLTWKNGL  108 (262)
T ss_dssp             EEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT--TCCEEEEEEETTEEEEEESSSSE
T ss_pred             EEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC--ccceeEEEEeCCEEEEEEeeCCE
Confidence            45566 443  334778898 67777777777755599999986544 4443332  233322333455555544 5889


Q ss_pred             EEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCccc--CceEEEeecCCCCCcE
Q 042434          377 IRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQ--NKYVIRSCFGGLDGTF  453 (517)
Q Consensus       377 i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~--~~~~i~~~~~s~~~~~  453 (517)
                      +.+||..+.+ ...+....  ....++++++.++++..++.|.++|..+. .....+.....  ....+.-+.+ .+|+.
T Consensus       109 v~v~D~~t~~~~~ti~~~~--eG~glt~dg~~L~~SdGs~~i~~iDp~T~-~v~~~I~V~~~g~~~~~lNELe~-~~G~l  184 (262)
T 3nol_A          109 GFVWNIRNLRQVRSFNYDG--EGWGLTHNDQYLIMSDGTPVLRFLDPESL-TPVRTITVTAHGEELPELNELEW-VDGEI  184 (262)
T ss_dssp             EEEEETTTCCEEEEEECSS--CCCCEEECSSCEEECCSSSEEEEECTTTC-SEEEEEECEETTEECCCEEEEEE-ETTEE
T ss_pred             EEEEECccCcEEEEEECCC--CceEEecCCCEEEEECCCCeEEEEcCCCC-eEEEEEEeccCCccccccceeEE-ECCEE
Confidence            9999999887 33333222  33344467888888877889999999876 44444332211  1111111121 26766


Q ss_pred             EEEecCCCcEEEEecCCCceeEEecCC------------CCCeeEEEecCCCCcEEEEee
Q 042434          454 IASGSENSQIYIWNRRNSKPIEILSGH------------SMTVNCVSWNPKRPKMLASAS  501 (517)
Q Consensus       454 l~~~~~dg~i~iwd~~~~~~~~~~~~h------------~~~v~~v~~~~~~~~~l~s~~  501 (517)
                      .+..-.+..|.+.|..+|+.+..+...            ....+.|||+|++..+++||-
T Consensus       185 yan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          185 FANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             EEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             EEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            666657889999999999998887632            135689999999856666653

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.78  E-value=2.2e-06  Score=82.64  Aligned_cols=239  Identities=11%  Similarity=0.140  Sum_probs=145.2

Q ss_pred             CEEEEEECC-CCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeC-CC--ceeEEEEeCCCCe
Q 042434          269 PVSFVAWSP-DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSS-DT--EKGIFMCDCDGNE  344 (517)
Q Consensus       269 ~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-d~--~v~i~~~~~~~~~  344 (517)
                      ....++++| ++..|+++...+.|+.+|+.++...... ........++|+++++.|+++.. ++  ...++.++..+..
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~  216 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF  216 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence            457889998 4556666655588999999876654444 35566889999999996666654 22  2235555555432


Q ss_pred             e--EeeeCcCCCceEEEEEcc-CCCEEEEEeCCCcEEEEECCCceE-Eeec--cCCCeeEEEEcCCCCEEEE-EeCCCeE
Q 042434          345 I--KAWRGTRIPKVLDLAVTP-DGENLISVLSDKDIRILNLGTYAE-RVIS--EEHPITSLSVSVDCKNFIV-NLNSQEI  417 (517)
Q Consensus       345 ~--~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~-~~~~--~~~~i~~~~~s~~~~~l~~-~~~d~~i  417 (517)
                      .  ..+..  ......++++| ++..+++-..++.|..++..+... ....  .......++++|+++++++ ....+.|
T Consensus       217 ~~~~~l~~--~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I  294 (430)
T 3tc9_A          217 KVITELTK--GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI  294 (430)
T ss_dssp             CSEEEEEE--CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred             eeeeeecc--CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence            2  22221  23467788999 676666666788999999987653 2222  2235788999999995554 4567889


Q ss_pred             EEEEcCCCC-c--cceEEeCcc------cC-------ceEEEeecC--------CCCCcEEEEecCCCcEEEEecCCCce
Q 042434          418 HMWDVAGKW-E--KPFKYTGHS------QN-------KYVIRSCFG--------GLDGTFIASGSENSQIYIWNRRNSKP  473 (517)
Q Consensus       418 ~~~d~~~~~-~--~~~~~~~~~------~~-------~~~i~~~~~--------s~~~~~l~~~~~dg~i~iwd~~~~~~  473 (517)
                      ..++..... .  ....+.+..      ..       ......++.        .++|.+.++-...+.|+.++ .+|..
T Consensus       295 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~v  373 (430)
T 3tc9_A          295 LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGRV  373 (430)
T ss_dssp             EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSEE
T ss_pred             EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCcE
Confidence            998875421 1  112222110      00       000001111        23456666666677888888 44643


Q ss_pred             eEEecC----C-------------CCCeeEEEecCC-CCcEEEEeeCCCcEEEeCCC
Q 042434          474 IEILSG----H-------------SMTVNCVSWNPK-RPKMLASASDDHTIRIWGPC  512 (517)
Q Consensus       474 ~~~~~~----h-------------~~~v~~v~~~~~-~~~~l~s~~~dg~v~iw~~~  512 (517)
                      ......    .             -.....|+++|+ + .++++-...+.|+.++++
T Consensus       374 ~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g-~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          374 TTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERE-CFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             EEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTT-EEEEEEGGGTEEEEEEEC
T ss_pred             EEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCC-EEEEEECCCCeEEEEccC
Confidence            332211    0             124789999995 5 677777777888887754

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.77  E-value=3.4e-05  Score=80.92  Aligned_cols=279  Identities=12%  Similarity=0.014  Sum_probs=169.5

Q ss_pred             cCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEE-------e-----ccCCCCEEEEEECCCCCeEEEEeCCC
Q 042434          222 KNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHT-------L-----RSHQNPVSFVAWSPDDTKLLTCGNAE  289 (517)
Q Consensus       222 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~-------~-----~~h~~~v~~l~~s~~~~~l~s~~~dg  289 (517)
                      ...|.++...++|. |..|+..+-|.+++..+.. +.....       .     ......|.++...++|. |-.|+.++
T Consensus       257 ~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~  333 (781)
T 3v9f_A          257 SSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQ-FLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGG  333 (781)
T ss_dssp             CCCEEEEEECTTSE-EEEEESSSCEEEEETTCC----------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSS
T ss_pred             CceEEEEEECCCCC-EEEEeCCCCeEEECCCCCe-eeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCC
Confidence            46799999988886 4445554557888875432 111111       0     11346799999998886 55667677


Q ss_pred             eEEEEECCCCcEEEEeC---------CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeee---CcCCCceE
Q 042434          290 VLKLWDVETGICKHTFG---------DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWR---GTRIPKVL  357 (517)
Q Consensus       290 ~i~iwd~~~~~~~~~~~---------~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~---~~~~~~i~  357 (517)
                      -|..++..++.......         .....|.++...++|... .|+.++-  ++.++..+.....+.   ......|.
T Consensus       334 Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt~~~G--l~~~~~~~~~~~~~~~~~~~~~~~v~  410 (781)
T 3v9f_A          334 GINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW-IGTDGGG--INVFENGKRVAIYNKENRELLSNSVL  410 (781)
T ss_dssp             CEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEE-EEEBSSC--EEEEETTEEEEECC-----CCCSBEE
T ss_pred             eEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEE-EEeCCCc--EEEEECCCCeEEEccCCCCCCCcceE
Confidence            78889887665433211         124568899888777644 5554443  888888765444332   12234688


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEECCCceEEeec----cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEe
Q 042434          358 DLAVTPDGENLISVLSDKDIRILNLGTYAERVIS----EEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYT  433 (517)
Q Consensus       358 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~  433 (517)
                      ++...+++... +|+.++.+..+|..+.......    ....|.++...+++. +.+++. +.+..||..+.. . ..+.
T Consensus       411 ~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~-~-~~~~  485 (781)
T 3v9f_A          411 CSLKDSEGNLW-FGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKK-V-IHHY  485 (781)
T ss_dssp             EEEECTTSCEE-EEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSS-C-CEEE
T ss_pred             EEEECCCCCEE-EEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCe-E-Eecc
Confidence            88888777654 4677677999998877633332    345788888888775 555555 668899986642 1 1221


Q ss_pred             Ccc---cCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecC---CCCCeeEEEecCCCCcEEEEeeCCCcEE
Q 042434          434 GHS---QNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSG---HSMTVNCVSWNPKRPKMLASASDDHTIR  507 (517)
Q Consensus       434 ~~~---~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---h~~~v~~v~~~~~~~~~l~s~~~dg~v~  507 (517)
                      ...   .....+.++...++|.+.+ |+.++-|..||..+++.......   ....|.++...++| .+ ..++.+|.|.
T Consensus       486 ~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g-~l-Wi~T~~Glv~  562 (781)
T 3v9f_A          486 DTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKG-QM-WLATGEGLVC  562 (781)
T ss_dssp             CTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTS-CE-EEEETTEEEE
T ss_pred             cCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCC-CE-EEEECCCceE
Confidence            111   0112244555567776554 45444488899876654332211   24578999998888 44 4445567658


Q ss_pred             EeCCCCC
Q 042434          508 IWGPCQS  514 (517)
Q Consensus       508 iw~~~~~  514 (517)
                      .|+..++
T Consensus       563 ~~d~~~~  569 (781)
T 3v9f_A          563 FPSARNF  569 (781)
T ss_dssp             ESCTTTC
T ss_pred             EECCCCC
Confidence            8887664

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.77  E-value=3.9e-05  Score=71.74  Aligned_cols=243  Identities=9%  Similarity=0.013  Sum_probs=147.7

Q ss_pred             CcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEE-eCCCeEEEEECCCCcE
Q 042434          223 NEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTC-GNAEVLKLWDVETGIC  301 (517)
Q Consensus       223 ~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~~dg~i~iwd~~~~~~  301 (517)
                      +..+|.+..+++ +|+.+. ...|+..++.... .  ..... ....+..++|++.+..|+.+ ...+.|..+++..+..
T Consensus        34 d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~-~--~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~  107 (349)
T 3v64_C           34 DRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSE-Y--TLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV  107 (349)
T ss_dssp             TSSCEEESSSCC-EEEEEC-BSCEEEECTTSCC-E--EEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCCcccccccCc-eeEeec-ccceEEEeCCCCe-e--EEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCc
Confidence            334566666644 444433 3457777765332 2  22222 33458899999766555544 4578899999877654


Q ss_pred             EEEeCCCCCceEEEEEeCCCCeEEEee-CCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEe-CC-CcEE
Q 042434          302 KHTFGDHGFIVSSCAWFPDSKRLVCGS-SDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVL-SD-KDIR  378 (517)
Q Consensus       302 ~~~~~~~~~~v~~i~~~~~~~~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d-g~i~  378 (517)
                      ...+.........+++.+.+..|+.+. ..+.  |...+.++.....+..........++++|.+..++... .. +.|.
T Consensus       108 ~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~--I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~  185 (349)
T 3v64_C          108 EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSR--IEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIE  185 (349)
T ss_dssp             EEEECSSCSCCCEEEEETTTTEEEEEETTTTE--EEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred             eEEEeCCCCCccEEEEecCCCeEEEEcCCCCe--EEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEE
Confidence            444433334567889988665555444 4455  88888887665554444445678999999766655544 34 7899


Q ss_pred             EEECCCceEEee--ccCCCeeEEEEcCCCCEEEEE-eCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEE
Q 042434          379 ILNLGTYAERVI--SEEHPITSLSVSVDCKNFIVN-LNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIA  455 (517)
Q Consensus       379 i~d~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  455 (517)
                      .+++........  ........++++|++..|+.+ +..+.|..+|+.+... .............+..    .++...+
T Consensus       186 r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~-~~~~~~~~~~P~giav----~~~~ly~  260 (349)
T 3v64_C          186 ASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KAVISQGLPHPFAITV----FEDSLYW  260 (349)
T ss_dssp             EEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEE----ETTEEEE
T ss_pred             EEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce-EEEEeCCCCCceEEEE----ECCEEEE
Confidence            998876542222  234457899999876666555 4567899999876422 2222211122222322    2456666


Q ss_pred             EecCCCcEEEEecCCCceeEEec
Q 042434          456 SGSENSQIYIWNRRNSKPIEILS  478 (517)
Q Consensus       456 ~~~~dg~i~iwd~~~~~~~~~~~  478 (517)
                      +-...+.|..++..+|+.+..+.
T Consensus       261 td~~~~~V~~~~~~~G~~~~~i~  283 (349)
T 3v64_C          261 TDWHTKSINSANKFTGKNQEIIR  283 (349)
T ss_dssp             EETTTTEEEEEETTTCCSCEEEE
T ss_pred             ecCCCCeEEEEEccCCCccEEec
Confidence            66677888888876776655554

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.76  E-value=5.2e-05  Score=79.49  Aligned_cols=278  Identities=9%  Similarity=0.042  Sum_probs=166.4

Q ss_pred             cCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEe-----ccCCCCEEEEEECCCCCeEEEEeCCCeEEEEEC
Q 042434          222 KNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTL-----RSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDV  296 (517)
Q Consensus       222 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~-----~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~  296 (517)
                      ...|.++...++|.+.+. +.+ -+.+||..++. +......     ......|.++...++|. |..|+..+-|.++|.
T Consensus       210 ~~~i~~i~~d~~g~lwig-t~~-Gl~~~d~~~~~-~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~  285 (781)
T 3v9f_A          210 GNDVRCIYKDTNGNIWIG-TSK-GLALFNANTET-FTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDL  285 (781)
T ss_dssp             CSSEEEEEECTTCCEEEE-ETT-EEEEEETTTTE-EEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEET
T ss_pred             CCceeEEEEcCCCCEEEE-eCC-cHheECCCCCc-EEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECC
Confidence            357999999888875554 444 58888875432 2111110     11246799999988876 444556456888998


Q ss_pred             CCCcEEEEeC--------------CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeC---------cCC
Q 042434          297 ETGICKHTFG--------------DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRG---------TRI  353 (517)
Q Consensus       297 ~~~~~~~~~~--------------~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~---------~~~  353 (517)
                      .++.......              .....|.++...++|. +-.|+.++-  +..++........+..         ...
T Consensus       286 ~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~G--l~~~~~~~~~~~~~~~~~~~~~~~~l~~  362 (781)
T 3v9f_A          286 QQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGG--INFISNAPPTFHTWSYSPTQMNESSLSN  362 (781)
T ss_dssp             TCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSC--EEEECSSCCSCEEEC----CCCSSCCSS
T ss_pred             CCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCe--EEEeCCCCCcceeeccCccccccCCCCC
Confidence            7765432111              1245789998888776 445554444  8888877655444321         123


Q ss_pred             CceEEEEEccCCCEEEEEeCCCcEEEEECCCceEEee-----ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcc
Q 042434          354 PKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVI-----SEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEK  428 (517)
Q Consensus       354 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~  428 (517)
                      ..|.++...++|.. .+|+.++-|..||..+......     .....|.++...+++. +.+|+.++.+..+|..++ . 
T Consensus       363 ~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~-~-  438 (781)
T 3v9f_A          363 KVVSSVCDDGQGKL-WIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLK-K-  438 (781)
T ss_dssp             SCEEEEEECTTSCE-EEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSC-E-
T ss_pred             cceEEEEEcCCCCE-EEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCC-c-
Confidence            46888988887764 4566666799999876553221     1235688888887775 555777777889987654 1 


Q ss_pred             ceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCC-----CCCeeEEEecCCCCcEEEEeeCC
Q 042434          429 PFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGH-----SMTVNCVSWNPKRPKMLASASDD  503 (517)
Q Consensus       429 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h-----~~~v~~v~~~~~~~~~l~s~~~d  503 (517)
                      ...+.........+.++...++|.+.+ |+. +-|..||..+++........     ...|.++...++| . |..|+.+
T Consensus       439 ~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g-~-lWigt~~  514 (781)
T 3v9f_A          439 FQIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEG-R-FWIGTFG  514 (781)
T ss_dssp             EEECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTC-C-EEEEESS
T ss_pred             EEEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCC-C-EEEEEcC
Confidence            122211011112244554466676444 444 45899998877654332222     4679999999888 4 4445554


Q ss_pred             CcEEEeCCCCC
Q 042434          504 HTIRIWGPCQS  514 (517)
Q Consensus       504 g~v~iw~~~~~  514 (517)
                      +-+..|+..++
T Consensus       515 ~Gl~~~~~~~~  525 (781)
T 3v9f_A          515 GGVGIYTPDMQ  525 (781)
T ss_dssp             SCEEEECTTCC
T ss_pred             CCEEEEeCCCC
Confidence            44777877653

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.72  E-value=5.3e-06  Score=86.26  Aligned_cols=241  Identities=10%  Similarity=0.063  Sum_probs=134.8

Q ss_pred             CEEEEEEC-CCCCeEEEEeC-CC----eEEEEECCCC-cEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCc---eeEEEE
Q 042434          269 PVSFVAWS-PDDTKLLTCGN-AE----VLKLWDVETG-ICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTE---KGIFMC  338 (517)
Q Consensus       269 ~v~~l~~s-~~~~~l~s~~~-dg----~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~---v~i~~~  338 (517)
                      .+...+|| |||++||.+.. +|    +|+++|+.++ +.+..  ........++|+|||+.|+....+..   -.|+.+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~  252 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRH  252 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--cccCceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence            67889999 99998885533 33    5999999998 63210  00112346889999998888776532   358899


Q ss_pred             eCCCCe---eEeeeCcCCCceEEEEEccCCCEEEEEeC---CCcEEEEECCCce--E--Eeec--cCCCeeEEEEcCCCC
Q 042434          339 DCDGNE---IKAWRGTRIPKVLDLAVTPDGENLISVLS---DKDIRILNLGTYA--E--RVIS--EEHPITSLSVSVDCK  406 (517)
Q Consensus       339 ~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~--~--~~~~--~~~~i~~~~~s~~~~  406 (517)
                      +..+..   ...+..........+.|+|||++|+..+.   ...|+++|+.+..  .  ....  ......++.|+. |+
T Consensus       253 ~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g~  331 (751)
T 2xe4_A          253 VMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-TS  331 (751)
T ss_dssp             ETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-TT
T ss_pred             ECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-CC
Confidence            887643   22333222235678899999998887653   3468889987652  2  2222  223344444443 55


Q ss_pred             EEEEEeC-C----CeEEEEEcCCCCccceE-EeCcccCceEEEeecCCCCCcEEEEecCCCc--EEEEec-------CCC
Q 042434          407 NFIVNLN-S----QEIHMWDVAGKWEKPFK-YTGHSQNKYVIRSCFGGLDGTFIASGSENSQ--IYIWNR-------RNS  471 (517)
Q Consensus       407 ~l~~~~~-d----~~i~~~d~~~~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~--i~iwd~-------~~~  471 (517)
                      .|+..+. +    ..|..+|+.+. ..... +..+.... .+....+. .+.++++...+|.  |+++|+       .++
T Consensus       332 ~l~~~t~~~~a~~~~L~~~d~~~~-~~~~~~li~~~~~~-~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g  408 (751)
T 2xe4_A          332 HLVILTNEGGAVNHKLLIAPRGQP-SDWSHVLVDHSEDV-FMESIAVR-SNYLVVAGRRAGLTRIWTMMADSQDGVFKAG  408 (751)
T ss_dssp             EEEEEECTTTCTTCEEEEEETTST-TCCCCEEECCCSSE-EEEEEEEC-SSEEEEEEEETTEEEEEEEECCTTTSCCCTT
T ss_pred             EEEEEeCCCCCCCcEEEEEcCCCc-ccceeeEECCCCCc-EEEEEEEE-CCEEEEEEEeCCEEEEEEEecccccccccCC
Confidence            5554443 3    25777776542 11122 22222221 22222222 3456667777775  556665       344


Q ss_pred             ceeEEecCC-CCCeeEEEe----cCCCCcEEEEeeCC---CcEEEeCCCCCC
Q 042434          472 KPIEILSGH-SMTVNCVSW----NPKRPKMLASASDD---HTIRIWGPCQSS  515 (517)
Q Consensus       472 ~~~~~~~~h-~~~v~~v~~----~~~~~~~l~s~~~d---g~v~iw~~~~~~  515 (517)
                      +....+... ...+..+.+    ++++..++++.+..   +.+..+++.+++
T Consensus       409 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~  460 (751)
T 2xe4_A          409 TGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS  460 (751)
T ss_dssp             TCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred             ccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            413444311 122445544    34664566665543   457777776553

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.71  E-value=3.8e-05  Score=72.89  Aligned_cols=251  Identities=9%  Similarity=-0.022  Sum_probs=151.6

Q ss_pred             EEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEE-EEeCCCeEEEEECCCCcEEEE
Q 042434          226 WFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLL-TCGNAEVLKLWDVETGICKHT  304 (517)
Q Consensus       226 ~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~  304 (517)
                      .|.+..+.+ +|+.+. ...|+..++..... .  .... ....+..++|++.+..|+ +-...+.|..+++..+.....
T Consensus        80 ~C~~~~~~~-~l~~~~-~~~I~~i~~~~~~~-~--~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~  153 (386)
T 3v65_B           80 SCKALGPEP-VLLFAN-RIDIRQVLPHRSEY-T--LLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV  153 (386)
T ss_dssp             CEEECSSCC-EEEEEC-BSCEEEECTTSCCC-E--EEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEE
T ss_pred             eECCccccc-eeEeec-CccceeeccCCCcE-E--EEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEE
Confidence            355555543 444443 35677777754322 1  2222 345588999997665555 445677999999877665444


Q ss_pred             eCCCCCceEEEEEeCCCCeEEEee-CCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeC-C-CcEEEEE
Q 042434          305 FGDHGFIVSSCAWFPDSKRLVCGS-SDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLS-D-KDIRILN  381 (517)
Q Consensus       305 ~~~~~~~v~~i~~~~~~~~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d-g~i~i~d  381 (517)
                      +.........+++.+.+..|+.+. ..+.  |+..+..+.....+..........+++.|.+..++.... . +.|..++
T Consensus       154 ~~~~~~~p~glavd~~~g~lY~~d~~~~~--I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~  231 (386)
T 3v65_B          154 VSTGLESPGGLAVDWVHDKLYWTDSGTSR--IEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS  231 (386)
T ss_dssp             ECSSCSCCCCEEEETTTTEEEEEETTTTE--EEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             EeCCCCCccEEEEEeCCCeEEEEcCCCCe--EEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEe
Confidence            433334557788887666555544 3444  888888876555544444456889999997776665543 3 6899998


Q ss_pred             CCCceE-Eee-ccCCCeeEEEEcCCCCEEEEE-eCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEec
Q 042434          382 LGTYAE-RVI-SEEHPITSLSVSVDCKNFIVN-LNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGS  458 (517)
Q Consensus       382 ~~~~~~-~~~-~~~~~i~~~~~s~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  458 (517)
                      +..... ... ........++++|++..|+.+ +..+.|..+|+.+... .............+..    ..+.++++-.
T Consensus       232 ~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~P~giav----~~~~ly~td~  306 (386)
T 3v65_B          232 MDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KAVISQGLPHPFAITV----FEDSLYWTDW  306 (386)
T ss_dssp             TTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC-EEEECSSCSSEEEEEE----ETTEEEEEET
T ss_pred             CCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee-EEEEECCCCCceEEEE----ECCEEEEeeC
Confidence            876542 222 234457899999876666555 4567899999875422 2222211112222222    2456666666


Q ss_pred             CCCcEEEEecCCCceeEEecCCCCCeeEEEe
Q 042434          459 ENSQIYIWNRRNSKPIEILSGHSMTVNCVSW  489 (517)
Q Consensus       459 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~  489 (517)
                      ..+.|..+|..+|+.+..+........+|++
T Consensus       307 ~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v  337 (386)
T 3v65_B          307 HTKSINSANKFTGKNQEIIRNKLHFPMDIHT  337 (386)
T ss_dssp             TTTEEEEEETTTCCSCEEEECSCSCCCCEEE
T ss_pred             CCCeEEEEECCCCcceEEEccCCCCCceEEE
Confidence            7788999987777766666543333344443

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.70  E-value=4.7e-06  Score=85.25  Aligned_cols=259  Identities=13%  Similarity=0.135  Sum_probs=152.7

Q ss_pred             CCEEEEeeCCCcEEEEEecCCCeeeEEEEeccC-CCCEEEEEECC--CCCeEEEEeC------CCeEEEEECCCCcEEEE
Q 042434          234 GEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSH-QNPVSFVAWSP--DDTKLLTCGN------AEVLKLWDVETGICKHT  304 (517)
Q Consensus       234 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h-~~~v~~l~~s~--~~~~l~s~~~------dg~i~iwd~~~~~~~~~  304 (517)
                      +..++.++.|+.|..+|..+++..   ..+... ......+..+|  .+..+++++.      +|.|..+|..+|+.+..
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~---W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~  193 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAI---WSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWR  193 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEE---EEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEe---eeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEE
Confidence            457788888999999999877543   222211 00000011111  1335555543      58999999999999887


Q ss_pred             eCCC---CC----------------------------ceEEEEEeCCCCeEEEeeCCCc-----------------eeEE
Q 042434          305 FGDH---GF----------------------------IVSSCAWFPDSKRLVCGSSDTE-----------------KGIF  336 (517)
Q Consensus       305 ~~~~---~~----------------------------~v~~i~~~~~~~~l~~~~~d~~-----------------v~i~  336 (517)
                      +...   ..                            ....+++.|+...++.++.++.                 ..|+
T Consensus       194 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~  273 (668)
T 1kv9_A          194 FYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSIL  273 (668)
T ss_dssp             EESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred             ecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence            7421   00                            1124678888888888876652                 1378


Q ss_pred             EEeCCCCee-EeeeCc-CC-------CceEEEEEccCCC---EEEEEeCCCcEEEEECCCceEEeec-c-----------
Q 042434          337 MCDCDGNEI-KAWRGT-RI-------PKVLDLAVTPDGE---NLISVLSDKDIRILNLGTYAERVIS-E-----------  392 (517)
Q Consensus       337 ~~~~~~~~~-~~~~~~-~~-------~~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~-~-----------  392 (517)
                      -+|..+..+ -.+... +.       .+.....+..+|+   .++.++.+|.++++|..+++..... .           
T Consensus       274 AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~  353 (668)
T 1kv9_A          274 AIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDL  353 (668)
T ss_dssp             EECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECT
T ss_pred             EEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccc
Confidence            888765443 333322 11       1222233334665   6888999999999999888732100 0           


Q ss_pred             --CC------------------------CeeEEEEcCCCCEEEEEe----------------------------------
Q 042434          393 --EH------------------------PITSLSVSVDCKNFIVNL----------------------------------  412 (517)
Q Consensus       393 --~~------------------------~i~~~~~s~~~~~l~~~~----------------------------------  412 (517)
                        ..                        .-..++++|+...+++..                                  
T Consensus       354 ~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~  433 (668)
T 1kv9_A          354 ATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPA  433 (668)
T ss_dssp             TTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCG
T ss_pred             ccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCC
Confidence              00                        011267777766665421                                  


Q ss_pred             --CCCeEEEEEcCCCCccceEEeCcccC-ceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCe-eEEE
Q 042434          413 --NSQEIHMWDVAGKWEKPFKYTGHSQN-KYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTV-NCVS  488 (517)
Q Consensus       413 --~d~~i~~~d~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v-~~v~  488 (517)
                        .+|.|..||+.++ +........... ...+     ...+.++++++.||.++.||.++|+.+..+....+.. .-+.
T Consensus       434 ~~~~g~l~A~D~~tG-~~~W~~~~~~~~~~~~~-----~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~  507 (668)
T 1kv9_A          434 AVVSGALLAWDPVKQ-KAAWKVPYPTHWNGGTL-----STAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMT  507 (668)
T ss_dssp             GGCEEEEEEEETTTT-EEEEEEEESSSCCCCEE-----EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEE
T ss_pred             CCccceEEEEeCCCC-cEEEEccCCCCCcCcee-----EeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceE
Confidence              2377999999877 444443322211 1111     2357788889999999999999999998887543221 2344


Q ss_pred             ecCCCCcEEEEee
Q 042434          489 WNPKRPKMLASAS  501 (517)
Q Consensus       489 ~~~~~~~~l~s~~  501 (517)
                      +..+|..+++.++
T Consensus       508 ~~~~G~~yva~~~  520 (668)
T 1kv9_A          508 FELAGRQYVAIMA  520 (668)
T ss_dssp             EEETTEEEEEEEE
T ss_pred             EEECCEEEEEEEe
Confidence            4456634555544

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.69  E-value=0.00016  Score=66.61  Aligned_cols=231  Identities=10%  Similarity=-0.008  Sum_probs=139.8

Q ss_pred             EEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEE-EEeCCCeEEEEECCC----CcEEEEeCCCCC
Q 042434          236 YLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLL-TCGNAEVLKLWDVET----GICKHTFGDHGF  310 (517)
Q Consensus       236 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~~~dg~i~iwd~~~----~~~~~~~~~~~~  310 (517)
                      +|+.+.. ..|+..++......   ..+. ....+..++|++++..|+ +-..++.|..+++.+    ......+...-.
T Consensus         3 ~ll~~~~-~~I~~i~~~~~~~~---~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~   77 (316)
T 1ijq_A            3 YLFFTNR-HEVRKMTLDRSEYT---SLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ   77 (316)
T ss_dssp             EEEEECB-SSEEEEETTSCCCE---EEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCS
T ss_pred             EEEEECC-CeEEEEECCCcceE---ehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCC
Confidence            3444433 46888888654322   2222 345678999998765555 445568999999876    222223322334


Q ss_pred             ceEEEEEeCCCCeEEEe-eCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCC--CcEEEEECCCceE
Q 042434          311 IVSSCAWFPDSKRLVCG-SSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSD--KDIRILNLGTYAE  387 (517)
Q Consensus       311 ~v~~i~~~~~~~~l~~~-~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~  387 (517)
                      ....+++.+.+..|+.+ ...+.  |..++..+.....+..........+++.|.+..++.+...  +.|..+++.....
T Consensus        78 ~p~glavd~~~~~ly~~d~~~~~--I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~  155 (316)
T 1ijq_A           78 APDGLAVDWIHSNIYWTDSVLGT--VSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI  155 (316)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTE--EEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE
T ss_pred             CcCEEEEeecCCeEEEEECCCCE--EEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe
Confidence            55788998765555544 44555  7888888766554443333467899999977766655543  6899998865543


Q ss_pred             Eee--ccCCCeeEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCccceEEeCc--ccCceEEEeecCCCCCcEEEEecCCCc
Q 042434          388 RVI--SEEHPITSLSVSVDCKNFIVNL-NSQEIHMWDVAGKWEKPFKYTGH--SQNKYVIRSCFGGLDGTFIASGSENSQ  462 (517)
Q Consensus       388 ~~~--~~~~~i~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~  462 (517)
                      ...  ........+++++++..++.+. ..+.|..+|+.+..... .....  ......+..   . .+.++++-...+.
T Consensus       156 ~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~-~~~~~~~~~~P~giav---~-~~~ly~~d~~~~~  230 (316)
T 1ijq_A          156 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT-ILEDEKRLAHPFSLAV---F-EDKVFWTDIINEA  230 (316)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-EEECTTTTSSEEEEEE---E-TTEEEEEETTTTE
T ss_pred             EEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEE-EeecCCccCCcEEEEE---E-CCEEEEEECCCCe
Confidence            222  2345678999999877666554 56799999997542221 11111  111122222   2 4566666667788


Q ss_pred             EEEEecCCCceeEEec
Q 042434          463 IYIWNRRNSKPIEILS  478 (517)
Q Consensus       463 i~iwd~~~~~~~~~~~  478 (517)
                      |..++..+|+.+..+.
T Consensus       231 V~~~~~~~g~~~~~i~  246 (316)
T 1ijq_A          231 IFSANRLTGSDVNLLA  246 (316)
T ss_dssp             EEEEETTTCCCCEEEE
T ss_pred             EEEEeCCCCcceEEEe
Confidence            9999987776555543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.67  E-value=0.00016  Score=68.93  Aligned_cols=240  Identities=10%  Similarity=0.010  Sum_probs=148.1

Q ss_pred             EEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEE-eCCCeEEEEECCCC----cEEEEeCCCCC
Q 042434          236 YLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTC-GNAEVLKLWDVETG----ICKHTFGDHGF  310 (517)
Q Consensus       236 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~~dg~i~iwd~~~~----~~~~~~~~~~~  310 (517)
                      +|+.+. ...|+..++......    .+......+..++|++.+..|+.+ ...+.|..+++...    .....+.....
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~----~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~  159 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYT----SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ  159 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCE----EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCS
T ss_pred             eeEEec-cceeEEEccCCccee----EeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCC
Confidence            444443 357888887644321    122345678899999866665554 45678999998652    23333433445


Q ss_pred             ceEEEEEeCCCCeEEEe-eCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeC--CCcEEEEECCCceE
Q 042434          311 IVSSCAWFPDSKRLVCG-SSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLS--DKDIRILNLGTYAE  387 (517)
Q Consensus       311 ~v~~i~~~~~~~~l~~~-~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~  387 (517)
                      ....+++.+.+..|+.+ ...+.  |...+.++.....+..........+++.|.+..++....  .+.|...++.....
T Consensus       160 ~p~glavD~~~~~lY~~d~~~~~--I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~  237 (400)
T 3p5b_L          160 APDGLAVDWIHSNIYWTDSVLGT--VSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI  237 (400)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTE--EEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC
T ss_pred             CcccEEEEecCCceEEEECCCCe--EEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc
Confidence            67889998855555554 44555  888898887665555444456889999997776666553  47899999876552


Q ss_pred             -Eee-ccCCCeeEEEEcCCCCEEEEE-eCCCeEEEEEcCCCCccceEEeCc--ccCceEEEeecCCCCCcEEEEecCCCc
Q 042434          388 -RVI-SEEHPITSLSVSVDCKNFIVN-LNSQEIHMWDVAGKWEKPFKYTGH--SQNKYVIRSCFGGLDGTFIASGSENSQ  462 (517)
Q Consensus       388 -~~~-~~~~~i~~~~~s~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~  462 (517)
                       ... ..-.....+++++++..|+.+ +..+.|..+|+.+.... ......  ......+..    ..+.++++-...+.
T Consensus       238 ~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~-~~~~~~~~l~~P~gl~v----~~~~lywtd~~~~~  312 (400)
T 3p5b_L          238 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TILEDEKRLAHPFSLAV----FEDKVFWTDIINEA  312 (400)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCE-EEEECSSTTSSEEEEEE----ETTEEEEEESSSCS
T ss_pred             EEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccE-EEEeCCCCCCCCEEEEE----eCCEEEEecCCCCe
Confidence             222 233578899999877776665 45678999998764222 222211  112222222    24556666667788


Q ss_pred             EEEEecCCCceeEEecCCCCCeeEE
Q 042434          463 IYIWNRRNSKPIEILSGHSMTVNCV  487 (517)
Q Consensus       463 i~iwd~~~~~~~~~~~~h~~~v~~v  487 (517)
                      |..+|..+|+.+..+........++
T Consensus       313 V~~~~~~~G~~~~~i~~~~~~p~~i  337 (400)
T 3p5b_L          313 IFSANRLTGSDVNLLAENLLSPEDM  337 (400)
T ss_dssp             EEEEESSSCCCCEEEECSCSCEEEE
T ss_pred             EEEEEcCCCCceEEEecCCCCCceE
Confidence            9999988887666665333334444

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.67  E-value=8.8e-06  Score=81.43  Aligned_cols=274  Identities=11%  Similarity=-0.038  Sum_probs=152.2

Q ss_pred             CCEEEEeeC-CCcEEEEEe-cCCCeeeEEEEeccCCC-----------CEEEEEECCCCCe----EEEEeCCCeEEEEEC
Q 042434          234 GEYLASSSS-DCSAIIWKV-LEDSKLTLKHTLRSHQN-----------PVSFVAWSPDDTK----LLTCGNAEVLKLWDV  296 (517)
Q Consensus       234 ~~~l~t~~~-dg~i~iw~~-~~~~~~~~~~~~~~h~~-----------~v~~l~~s~~~~~----l~s~~~dg~i~iwd~  296 (517)
                      +..|++++. ++.|.-+|. .+++..   -.+.....           ....++++|.+..    |+.++.|+.+..+|.
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~l---W~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa  138 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTIL---WQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNA  138 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEE---EEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEET
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEE---EEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEEC
Confidence            445666666 788888888 666432   22221111           0122445344444    888889999999999


Q ss_pred             CCCcEEEEeCCCC----CceEE-EEEeCCCCeEEEeeC------CCceeEEEEeCCC-CeeEeeeCcCCC----------
Q 042434          297 ETGICKHTFGDHG----FIVSS-CAWFPDSKRLVCGSS------DTEKGIFMCDCDG-NEIKAWRGTRIP----------  354 (517)
Q Consensus       297 ~~~~~~~~~~~~~----~~v~~-i~~~~~~~~l~~~~~------d~~v~i~~~~~~~-~~~~~~~~~~~~----------  354 (517)
                      .+|+.+.......    ..+.+ .... ++ .+++++.      ++.  |+-+|..+ +.+-.+......          
T Consensus       139 ~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~--v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~  214 (599)
T 1w6s_A          139 ETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGY--LTAYDVKTGEQVWRAYATGPDKDLLLASDFN  214 (599)
T ss_dssp             TTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCE--EEEEETTTCCEEEEEESSSCHHHHTBCTTTT
T ss_pred             CCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCe--EEEEECCCCcEEEEEcCCCCccccccccccc
Confidence            9999887654322    01211 1111 33 5555542      566  88888764 333333221100          


Q ss_pred             ---------------------------ceEEEEEccCCCEEEEEeCC----------------CcEEEEECCCceE-Eee
Q 042434          355 ---------------------------KVLDLAVTPDGENLISVLSD----------------KDIRILNLGTYAE-RVI  390 (517)
Q Consensus       355 ---------------------------~i~~~~~~~~~~~l~~~~~d----------------g~i~i~d~~~~~~-~~~  390 (517)
                                                 .-..+++.++...++.++.+                +.|..+|..+++. ...
T Consensus       215 ~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~  294 (599)
T 1w6s_A          215 IKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGY  294 (599)
T ss_dssp             TTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEE
T ss_pred             cccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEe
Confidence                                       00134566777788877765                3799999998882 222


Q ss_pred             ccC-C---------CeeEEEEc-CCC---CEEEEEeCCCeEEEEEcCCCCccceEEeCcc----------cCceEE----
Q 042434          391 SEE-H---------PITSLSVS-VDC---KNFIVNLNSQEIHMWDVAGKWEKPFKYTGHS----------QNKYVI----  442 (517)
Q Consensus       391 ~~~-~---------~i~~~~~s-~~~---~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~----------~~~~~i----  442 (517)
                      ... +         ...-+... .+|   ..++.++.+|.++++|..++ +.+.......          .....+    
T Consensus       295 q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG-~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~  373 (599)
T 1w6s_A          295 QKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDG-ALVSANKLDDTVNVFKSVDLKTGQPVRDPE  373 (599)
T ss_dssp             ESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTC-CEEEEEESSTTCCSEEEECTTTCCEEECGG
T ss_pred             ecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCC-CEeecccccCCcccccccccCCCceeeccc
Confidence            111 1         11112222 467   45777889999999998876 3333222110          000000    


Q ss_pred             ----------------------EeecCCCCCcEEEEe---------------------------------c------CCC
Q 042434          443 ----------------------RSCFGGLDGTFIASG---------------------------------S------ENS  461 (517)
Q Consensus       443 ----------------------~~~~~s~~~~~l~~~---------------------------------~------~dg  461 (517)
                                            ....++|+..++++.                                 +      .+|
T Consensus       374 ~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G  453 (599)
T 1w6s_A          374 YGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLG  453 (599)
T ss_dssp             GCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCE
T ss_pred             cCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcC
Confidence                                  011223333333221                                 1      357


Q ss_pred             cEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCCC
Q 042434          462 QIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSEV  517 (517)
Q Consensus       462 ~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~v  517 (517)
                      .|..||+.+|+.+-.... ..++.+-.....+ .+++.++.||.++.||.++|+++
T Consensus       454 ~l~A~D~~tG~~~W~~~~-~~~~~~g~~~tag-g~vf~gt~dg~l~A~D~~tG~~l  507 (599)
T 1w6s_A          454 QIKAYNAITGDYKWEKME-RFAVWGGTMATAG-DLVFYGTLDGYLKARDSDTGDLL  507 (599)
T ss_dssp             EEEEECTTTCCEEEEEEE-SSCCCSBCEEETT-TEEEEECTTSEEEEEETTTCCEE
T ss_pred             eEEEEECCCCCEEeEecC-CCCccCcceEecC-CEEEEECCCCeEEEEECCCCCEE
Confidence            899999999998877652 1222211112234 46777999999999999998853

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.66  E-value=1.4e-05  Score=79.96  Aligned_cols=264  Identities=13%  Similarity=0.082  Sum_probs=149.4

Q ss_pred             EEECCCCCE----EEEeeCCCcEEEEEecCCCeeeEEEEeccCC--CCEEE-EEECCCCCeEEEEe------CCCeEEEE
Q 042434          228 VQFSNNGEY----LASSSSDCSAIIWKVLEDSKLTLKHTLRSHQ--NPVSF-VAWSPDDTKLLTCG------NAEVLKLW  294 (517)
Q Consensus       228 ~~~s~~~~~----l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~--~~v~~-l~~s~~~~~l~s~~------~dg~i~iw  294 (517)
                      ++++|.+..    |+.++.|+.+..+|..+++..- ......+.  ..+.+ ... .++ .+++++      .+|.|..+
T Consensus       111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W-~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~  187 (599)
T 1w6s_A          111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVW-KVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAY  187 (599)
T ss_dssp             CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEE-EEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEE
T ss_pred             eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEE-eecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEE
Confidence            344444444    7788889999999988775431 11221110  01111 011 134 455554      38999999


Q ss_pred             ECCCCcEEEEeCCCCCc-------------------------------------e-EEEEEeCCCCeEEEeeCCCc----
Q 042434          295 DVETGICKHTFGDHGFI-------------------------------------V-SSCAWFPDSKRLVCGSSDTE----  332 (517)
Q Consensus       295 d~~~~~~~~~~~~~~~~-------------------------------------v-~~i~~~~~~~~l~~~~~d~~----  332 (517)
                      |..+|+.+..+......                                     + ..+++.++...++.++.++.    
T Consensus       188 D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~  267 (599)
T 1w6s_A          188 DVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNE  267 (599)
T ss_dssp             ETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCG
T ss_pred             ECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccC
Confidence            99999988776432111                                     0 13456677777777766531    


Q ss_pred             ----------eeEEEEeCCCCeeE-eeeCcCC---------CceEEEEEc-cCC---CEEEEEeCCCcEEEEECCCceEE
Q 042434          333 ----------KGIFMCDCDGNEIK-AWRGTRI---------PKVLDLAVT-PDG---ENLISVLSDKDIRILNLGTYAER  388 (517)
Q Consensus       333 ----------v~i~~~~~~~~~~~-~~~~~~~---------~~i~~~~~~-~~~---~~l~~~~~dg~i~i~d~~~~~~~  388 (517)
                                -.++-+|..+..+. .+...+.         .++. +... .+|   ..++.++.+|.++++|..+++..
T Consensus       268 ~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l  346 (599)
T 1w6s_A          268 TMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALV  346 (599)
T ss_dssp             GGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred             cccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEe
Confidence                      13888888754442 3322211         1111 2222 467   46777889999999999888722


Q ss_pred             e-ecc--------------CCC--------------------------eeEEEEcCCCCEEEEEe---------------
Q 042434          389 V-ISE--------------EHP--------------------------ITSLSVSVDCKNFIVNL---------------  412 (517)
Q Consensus       389 ~-~~~--------------~~~--------------------------i~~~~~s~~~~~l~~~~---------------  412 (517)
                      . ...              ..+                          -..++++|+...+++..               
T Consensus       347 w~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~  426 (599)
T 1w6s_A          347 SANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYK  426 (599)
T ss_dssp             EEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCC
T ss_pred             ecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeeccccccc
Confidence            1 110              001                          12456777666655432               


Q ss_pred             ------------------------CCCeEEEEEcCCCCccceEEe-CcccCceEEEeecCCCCCcEEEEecCCCcEEEEe
Q 042434          413 ------------------------NSQEIHMWDVAGKWEKPFKYT-GHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWN  467 (517)
Q Consensus       413 ------------------------~d~~i~~~d~~~~~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd  467 (517)
                                              ..|.+..||+.++ +...... +.......+     ...+..++.++.||.++.||
T Consensus       427 ~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG-~~~W~~~~~~~~~~g~~-----~tagg~vf~gt~dg~l~A~D  500 (599)
T 1w6s_A          427 AGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITG-DYKWEKMERFAVWGGTM-----ATAGDLVFYGTLDGYLKARD  500 (599)
T ss_dssp             TTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTC-CEEEEEEESSCCCSBCE-----EETTTEEEEECTTSEEEEEE
T ss_pred             CCcceecccceeccCCcCCcccCCCcCeEEEEECCCC-CEEeEecCCCCccCcce-----EecCCEEEEECCCCeEEEEE
Confidence                                    2367888888776 3333332 111100001     12466788899999999999


Q ss_pred             cCCCceeEEecCCCCCe-eEEEecCCCCcEEEEee
Q 042434          468 RRNSKPIEILSGHSMTV-NCVSWNPKRPKMLASAS  501 (517)
Q Consensus       468 ~~~~~~~~~~~~h~~~v-~~v~~~~~~~~~l~s~~  501 (517)
                      .++|+.+..++...+.+ .-+.|..+|..++++.+
T Consensus       501 ~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~~~~  535 (599)
T 1w6s_A          501 SDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYY  535 (599)
T ss_dssp             TTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             CCCCCEEEEeeCCCCcEeccEEEEeCCEEEEEEEc
Confidence            99999998886443222 23556667744554443

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.65  E-value=4.8e-05  Score=66.76  Aligned_cols=201  Identities=7%  Similarity=0.058  Sum_probs=131.3

Q ss_pred             EEeccccCcEEEEEECCCCCEEE-EeeCCCcEEEEEecCCCeeeEEEEec-cCCCCEEEEEECCCCCeEEEEeCCCeEEE
Q 042434          216 QILTEHKNEVWFVQFSNNGEYLA-SSSSDCSAIIWKVLEDSKLTLKHTLR-SHQNPVSFVAWSPDDTKLLTCGNAEVLKL  293 (517)
Q Consensus       216 ~~l~~h~~~v~~~~~s~~~~~l~-t~~~dg~i~iw~~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~~~dg~i~i  293 (517)
                      +.+.+-.+.+..++|+|++..|+ +...++.|...|.. +.   ....+. +.....-.+++.+++.++++.-.++.+.+
T Consensus        20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~---v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~   95 (255)
T 3qqz_A           20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GD---LIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYV   95 (255)
T ss_dssp             EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CC---EEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEE
T ss_pred             eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CC---EEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEE
Confidence            45667777899999999766554 46677778777775 32   223331 22356788999999887777667788999


Q ss_pred             EECCCCcE---EEEeC------CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeC--CCCeeEeee------CcCCCce
Q 042434          294 WDVETGIC---KHTFG------DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDC--DGNEIKAWR------GTRIPKV  356 (517)
Q Consensus       294 wd~~~~~~---~~~~~------~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~--~~~~~~~~~------~~~~~~i  356 (517)
                      +++.....   +....      ........++|.|+++.|+++.......++.|+-  .+..+....      ......+
T Consensus        96 ~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~  175 (255)
T 3qqz_A           96 ISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDV  175 (255)
T ss_dssp             EEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCC
T ss_pred             EEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCc
Confidence            98765432   22221      2345578999999998888877776666888872  222222221      1122357


Q ss_pred             EEEEEccCCC-EEEEEeCCCcEEEEECCCceEEeeccC----------CCeeEEEEcCCCCEEEEEeCCCeEEEEE
Q 042434          357 LDLAVTPDGE-NLISVLSDKDIRILNLGTYAERVISEE----------HPITSLSVSVDCKNFIVNLNSQEIHMWD  421 (517)
Q Consensus       357 ~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~----------~~i~~~~~s~~~~~l~~~~~d~~i~~~d  421 (517)
                      .+++++|... +++....++.+.++|............          .....+++.++|+.++ .+..+.++.|.
T Consensus       176 S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyI-vsE~n~~y~f~  250 (255)
T 3qqz_A          176 SGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYI-VSEPNRFYRFT  250 (255)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEE-EETTTEEEEEE
T ss_pred             eeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEE-EcCCceEEEEE
Confidence            8899999755 455555667888899876642222211          3678999999997444 46666666664

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.65  E-value=4.6e-06  Score=72.74  Aligned_cols=190  Identities=13%  Similarity=0.115  Sum_probs=121.0

Q ss_pred             ccEEEeccccCc--EEEEEECCCCCEEEEeeCCC--cEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEE-eC
Q 042434          213 ETVQILTEHKNE--VWFVQFSNNGEYLASSSSDC--SAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTC-GN  287 (517)
Q Consensus       213 ~~~~~l~~h~~~--v~~~~~s~~~~~l~t~~~dg--~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~~  287 (517)
                      +.+.++ .|...  ...+.|+ ++.+..+++.+|  .|+++|+.+++..   ..+... .........++++.|... -.
T Consensus        32 ~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~---~~~~l~-~~~FgeGit~~g~~ly~ltw~  105 (262)
T 3nol_A           32 QIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTL---QQIELG-KRYFGEGISDWKDKIVGLTWK  105 (262)
T ss_dssp             EEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEE---EEEECC-TTCCEEEEEEETTEEEEEESS
T ss_pred             EEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEE---EEEecC-CccceeEEEEeCCEEEEEEee
Confidence            445555 35543  4788998 677777777766  8999999877543   333222 233232222345455544 45


Q ss_pred             CCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCe-eEeeeCc----CCCceEEEEEc
Q 042434          288 AEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNE-IKAWRGT----RIPKVLDLAVT  362 (517)
Q Consensus       288 dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~-~~~~~~~----~~~~i~~~~~~  362 (517)
                      ++.+.+||..+.+.+.++......   ..+++|++.|+.+..++.  ++.+|..+.. ...+...    ....++.+.+.
T Consensus       106 ~~~v~v~D~~t~~~~~ti~~~~eG---~glt~dg~~L~~SdGs~~--i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~  180 (262)
T 3nol_A          106 NGLGFVWNIRNLRQVRSFNYDGEG---WGLTHNDQYLIMSDGTPV--LRFLDPESLTPVRTITVTAHGEELPELNELEWV  180 (262)
T ss_dssp             SSEEEEEETTTCCEEEEEECSSCC---CCEEECSSCEEECCSSSE--EEEECTTTCSEEEEEECEETTEECCCEEEEEEE
T ss_pred             CCEEEEEECccCcEEEEEECCCCc---eEEecCCCEEEEECCCCe--EEEEcCCCCeEEEEEEeccCCccccccceeEEE
Confidence            889999999999999988643322   233457777777765555  9999998643 3333321    11234557776


Q ss_pred             cCCCEEEEEeCCCcEEEEECCCce-EEeecc-------------CCCeeEEEEcCCCCEEEEEeCC
Q 042434          363 PDGENLISVLSDKDIRILNLGTYA-ERVISE-------------EHPITSLSVSVDCKNFIVNLNS  414 (517)
Q Consensus       363 ~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~-------------~~~i~~~~~s~~~~~l~~~~~d  414 (517)
                       +|+..+..-.++.|.+.|..+++ ...+..             ....+.++++|+++.|++.+..
T Consensus       181 -~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          181 -DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             -TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             -CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence             67655555568899999999987 222211             2356899999998888877653

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.64  E-value=2.2e-05  Score=78.58  Aligned_cols=260  Identities=11%  Similarity=0.070  Sum_probs=147.8

Q ss_pred             CCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCC--CCEEEEEECC--CCCeEEEEeC------CCeEEEEECCCCcEEE
Q 042434          234 GEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQ--NPVSFVAWSP--DDTKLLTCGN------AEVLKLWDVETGICKH  303 (517)
Q Consensus       234 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~--~~v~~l~~s~--~~~~l~s~~~------dg~i~iwd~~~~~~~~  303 (517)
                      +..++.++.|+.+..+|..+++..- ......+.  ..+.   -+|  .+..+++++.      ++.|..+|..+|+.+.
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W-~~~~~~~~~~~~~~---~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W  190 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINW-EVEVCDPKVGSTLT---QAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKW  190 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEE-EEECCCGGGTCBCC---SCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEE-EecCCCCCccceec---cCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEE
Confidence            5577788889999999998775431 11222111  0111   111  1335555554      7899999999999887


Q ss_pred             EeCCCCCc-------------------------------------e-EEEEEeCCCCeEEEeeCCC-----------c--
Q 042434          304 TFGDHGFI-------------------------------------V-SSCAWFPDSKRLVCGSSDT-----------E--  332 (517)
Q Consensus       304 ~~~~~~~~-------------------------------------v-~~i~~~~~~~~l~~~~~d~-----------~--  332 (517)
                      ++......                                     + ..+++.++...++.++.+.           .  
T Consensus       191 ~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y  270 (571)
T 2ad6_A          191 RAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKW  270 (571)
T ss_dssp             EEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTT
T ss_pred             EEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCcee
Confidence            76432110                                     0 1355667666776665321           1  


Q ss_pred             -eeEEEEeCCCCee-EeeeCcC--------CCceEEEEEccCCC---EEEEEeCCCcEEEEECCCceEE-eeccC-----
Q 042434          333 -KGIFMCDCDGNEI-KAWRGTR--------IPKVLDLAVTPDGE---NLISVLSDKDIRILNLGTYAER-VISEE-----  393 (517)
Q Consensus       333 -v~i~~~~~~~~~~-~~~~~~~--------~~~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~-~~~~~-----  393 (517)
                       -.++-+|..+... -.+...+        .....-+....+|+   .++.++.+|.++++|..+++.. .....     
T Consensus       271 ~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w  350 (571)
T 2ad6_A          271 TMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNV  350 (571)
T ss_dssp             TTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCS
T ss_pred             EEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccc
Confidence             1378888875443 3332211        01111122334674   5678889999999999888722 11111     


Q ss_pred             ---------CCe--------------------------eEEEEcCCCCEEEEEe--------------------------
Q 042434          394 ---------HPI--------------------------TSLSVSVDCKNFIVNL--------------------------  412 (517)
Q Consensus       394 ---------~~i--------------------------~~~~~s~~~~~l~~~~--------------------------  412 (517)
                               .++                          ..++++|+...+++.+                          
T Consensus       351 ~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~  430 (571)
T 2ad6_A          351 FKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLA  430 (571)
T ss_dssp             EEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred             cccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccce
Confidence                     111                          2457788877777654                          


Q ss_pred             -----------CCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCC
Q 042434          413 -----------NSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHS  481 (517)
Q Consensus       413 -----------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~  481 (517)
                                 .++.+..||+.++ +...++......    ........+..++.++.||.|+.||.++|+.+..+....
T Consensus       431 ~~~~~~~~~~~~~g~l~a~D~~tG-~~~W~~~~~~~~----~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~  505 (571)
T 2ad6_A          431 MYPGPNGPTKKEMGQIRAFDLTTG-KAKWTKWEKFAA----WGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPS  505 (571)
T ss_dssp             EEECTTSTTSCCCEEEEEECTTTC-CEEEEEEESSCC----CSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             eccCccccCCCCCCeEEEEECCCC-CEEEEecCCCCc----cceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCC
Confidence                       2468888998776 333333321110    000111245677779999999999999999998887432


Q ss_pred             CC-eeEEEecCCCCcEEEEeeC
Q 042434          482 MT-VNCVSWNPKRPKMLASASD  502 (517)
Q Consensus       482 ~~-v~~v~~~~~~~~~l~s~~~  502 (517)
                      .. -..+.+..++..++++.+.
T Consensus       506 ~~~~~p~~~~~~G~~yv~~~~G  527 (571)
T 2ad6_A          506 GGIGSPMTYSFKGKQYIGSMYG  527 (571)
T ss_dssp             CCCSCCEEEEETTEEEEEEEEC
T ss_pred             CcEeeeEEEEECCEEEEEEECC
Confidence            21 1234455677334444433

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.64  E-value=4.8e-06  Score=83.39  Aligned_cols=271  Identities=11%  Similarity=-0.046  Sum_probs=152.9

Q ss_pred             CCEEEEeeC-CCcEEEEEe-cCCCeeeEEEEeccCCC----------CE-EEEEECCCCCeEEEEeCCCeEEEEECCCCc
Q 042434          234 GEYLASSSS-DCSAIIWKV-LEDSKLTLKHTLRSHQN----------PV-SFVAWSPDDTKLLTCGNAEVLKLWDVETGI  300 (517)
Q Consensus       234 ~~~l~t~~~-dg~i~iw~~-~~~~~~~~~~~~~~h~~----------~v-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~  300 (517)
                      +..++.++. ++.|.-+|. .+++..   -.+.....          .+ ..++.  ++..+++++.|+.+..+|..+|+
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~---W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~  136 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIV---WQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGK  136 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEE---EEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCC
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEE---EEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCC
Confidence            345555666 788888888 666432   22211110          00 11122  35678888899999999999999


Q ss_pred             EEEEeCCCC----CceEE-EEEeCCCCeEEEeeC------CCceeEEEEeCCC-CeeEeeeCcCCC--------------
Q 042434          301 CKHTFGDHG----FIVSS-CAWFPDSKRLVCGSS------DTEKGIFMCDCDG-NEIKAWRGTRIP--------------  354 (517)
Q Consensus       301 ~~~~~~~~~----~~v~~-i~~~~~~~~l~~~~~------d~~v~i~~~~~~~-~~~~~~~~~~~~--------------  354 (517)
                      .+..+....    ..+.+ .... + ..+++++.      ++.  ++.+|..+ +.+-.+......              
T Consensus       137 ~~W~~~~~~~~~~~~~~~~P~v~-~-g~v~vg~~~~~~~~~g~--v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~  212 (571)
T 2ad6_A          137 INWEVEVCDPKVGSTLTQAPFVA-K-DTVLMGCSGAELGVRGA--VNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANP  212 (571)
T ss_dssp             EEEEEECCCGGGTCBCCSCCEEE-T-TEEEEECBCGGGTCCCE--EEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred             EEEEecCCCCCccceeccCCEEE-C-CEEEEEecCCccCCCCE--EEEEECCCCcEEEEEccCCCccccccCcccccccc
Confidence            887664321    01211 1111 3 35555554      566  88888864 443333221100              


Q ss_pred             -----------------------ceEEEEEccCCCEEEEEeCC----------------CcEEEEECCCceE-Eeec---
Q 042434          355 -----------------------KVLDLAVTPDGENLISVLSD----------------KDIRILNLGTYAE-RVIS---  391 (517)
Q Consensus       355 -----------------------~i~~~~~~~~~~~l~~~~~d----------------g~i~i~d~~~~~~-~~~~---  391 (517)
                                             ....+++.++...++.++.+                +.|..+|..+++. ....   
T Consensus       213 ~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~  292 (571)
T 2ad6_A          213 HYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTP  292 (571)
T ss_dssp             GGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESST
T ss_pred             cccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCC
Confidence                                   00235666766677766542                3599999998872 2221   


Q ss_pred             cC-------CCeeEEEEcCCCC---EEEEEeCCCeEEEEEcCCCCccceEEeCcc-c----------Cc-----------
Q 042434          392 EE-------HPITSLSVSVDCK---NFIVNLNSQEIHMWDVAGKWEKPFKYTGHS-Q----------NK-----------  439 (517)
Q Consensus       392 ~~-------~~i~~~~~s~~~~---~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~----------~~-----------  439 (517)
                      +.       ....-+...++|+   .+++++.+|.++++|..++ +.+....... .          ..           
T Consensus       293 ~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG-~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~  371 (571)
T 2ad6_A          293 HDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENG-NLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRM  371 (571)
T ss_dssp             TCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTC-CEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCT
T ss_pred             CcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCC-CEEeeecccCCccccccccccCCceecccccCCCC
Confidence            11       1111122234674   5677888999999998776 3333322111 0          00           


Q ss_pred             ---eEE-----------EeecCCCCCcEEEEec-------------------------------------CCCcEEEEec
Q 042434          440 ---YVI-----------RSCFGGLDGTFIASGS-------------------------------------ENSQIYIWNR  468 (517)
Q Consensus       440 ---~~i-----------~~~~~s~~~~~l~~~~-------------------------------------~dg~i~iwd~  468 (517)
                         ..+           ....++|+..++++.+                                     .+|.|+.||.
T Consensus       372 ~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~  451 (571)
T 2ad6_A          372 DHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDL  451 (571)
T ss_dssp             TCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECT
T ss_pred             CCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEEC
Confidence               000           1123355555555542                                     3578999999


Q ss_pred             CCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434          469 RNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSE  516 (517)
Q Consensus       469 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~  516 (517)
                      .+|+.+.++... ..+.+......+ .+++.++.||.|+.||..++++
T Consensus       452 ~tG~~~W~~~~~-~~~~~~~~~t~g-g~v~~g~~dg~l~a~D~~tG~~  497 (571)
T 2ad6_A          452 TTGKAKWTKWEK-FAAWGGTLYTKG-GLVWYATLDGYLKALDNKDGKE  497 (571)
T ss_dssp             TTCCEEEEEEES-SCCCSBCEEETT-TEEEEECTTSEEEEEETTTCCE
T ss_pred             CCCCEEEEecCC-CCccceeEEECC-CEEEEEcCCCeEEEEECCCCCE
Confidence            999988877632 233332222234 3677789999999999999875

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.64  E-value=6.5e-06  Score=85.61  Aligned_cols=195  Identities=11%  Similarity=0.113  Sum_probs=115.2

Q ss_pred             cccC-cEEEEEEC-CCCCEEEEeeC-CC----cEEEEEecCC-CeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCC---
Q 042434          220 EHKN-EVWFVQFS-NNGEYLASSSS-DC----SAIIWKVLED-SKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNA---  288 (517)
Q Consensus       220 ~h~~-~v~~~~~s-~~~~~l~t~~~-dg----~i~iw~~~~~-~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---  288 (517)
                      +|.- .+...+|| |||++||.+.. +|    .|+++|+.++ ....  ..+.   .....++|+|||+.|+....+   
T Consensus       170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~--~~~~---~~~~~~~WspDg~~l~y~~~d~~~  244 (751)
T 2xe4_A          170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA--DKVS---GTNGEIVWGPDHTSLFYVTKDETL  244 (751)
T ss_dssp             TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC--CCEE---EECSCCEECSSTTEEEEEEECTTC
T ss_pred             CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC--cccc---CceeeEEEecCCCEEEEEEECCCC
Confidence            3443 68889999 99999886543 22    4999999876 4211  0111   113467899999888877665   


Q ss_pred             --CeEEEEECCCCcE--EEEeC-CCCCceEEEEEeCCCCeEEEeeCC-CceeEEEEeCCCC--ee--EeeeCcCCCceEE
Q 042434          289 --EVLKLWDVETGIC--KHTFG-DHGFIVSSCAWFPDSKRLVCGSSD-TEKGIFMCDCDGN--EI--KAWRGTRIPKVLD  358 (517)
Q Consensus       289 --g~i~iwd~~~~~~--~~~~~-~~~~~v~~i~~~~~~~~l~~~~~d-~~v~i~~~~~~~~--~~--~~~~~~~~~~i~~  358 (517)
                        ..|.++++.++..  ...+. ........+.|+|||++|+..+.+ ..-.+++++..+.  ..  ..+.........+
T Consensus       245 ~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s  324 (751)
T 2xe4_A          245 RENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYD  324 (751)
T ss_dssp             CEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEE
T ss_pred             CCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEE
Confidence              2688889887642  23332 223446788999999988776533 3455899998753  23  3333333334445


Q ss_pred             EEEccCCCEEE-EEeCC----CcEEEEECCCc-e-EE-eeccCCC--eeEEEEcCCCCEEE-EEeCCCe--EEEEEc
Q 042434          359 LAVTPDGENLI-SVLSD----KDIRILNLGTY-A-ER-VISEEHP--ITSLSVSVDCKNFI-VNLNSQE--IHMWDV  422 (517)
Q Consensus       359 ~~~~~~~~~l~-~~~~d----g~i~i~d~~~~-~-~~-~~~~~~~--i~~~~~s~~~~~l~-~~~~d~~--i~~~d~  422 (517)
                      +.|+. |..|+ ....+    ..|..+|+.+. . .. ...+...  +..+.+  .++.++ +...++.  |.++|+
T Consensus       325 ~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          325 VQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             EEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEEEEEETTEEEEEEEEC
T ss_pred             Eeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEEEEEeCCEEEEEEEec
Confidence            55443 55444 44333    26777787652 3 23 3444433  344444  445554 4455664  556665

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.62  E-value=5.1e-05  Score=65.60  Aligned_cols=194  Identities=8%  Similarity=0.040  Sum_probs=120.2

Q ss_pred             cEEEEeCCC--CCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCee-EeeeCcCCCceEEEEEccCCCEEE-EEeCCC
Q 042434          300 ICKHTFGDH--GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEI-KAWRGTRIPKVLDLAVTPDGENLI-SVLSDK  375 (517)
Q Consensus       300 ~~~~~~~~~--~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg  375 (517)
                      +.+.++ .|  ......+.|++ +.++.+.+.+|.-.|..+|..+..+ ..........-..+++.  +..++ ..-.++
T Consensus        10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~   85 (243)
T 3mbr_X           10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNH   85 (243)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSS
T ss_pred             EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCC
Confidence            345555 44  34466889986 5666777777655699999986554 43433332122334443  44444 445688


Q ss_pred             cEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccC--ceEEEeecCCCCCc
Q 042434          376 DIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQN--KYVIRSCFGGLDGT  452 (517)
Q Consensus       376 ~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~--~~~i~~~~~s~~~~  452 (517)
                      .+.+||..+.+ ...+.....-  ..+.++++.++++..++.|.++|..+. .....+.-...+  ...+.-+.+ .+|+
T Consensus        86 ~v~v~D~~tl~~~~ti~~~~~G--wglt~dg~~L~vSdgs~~l~~iDp~t~-~~~~~I~V~~~g~~~~~lNeLe~-~~G~  161 (243)
T 3mbr_X           86 EGFVYDLATLTPRARFRYPGEG--WALTSDDSHLYMSDGTAVIRKLDPDTL-QQVGSIKVTAGGRPLDNLNELEW-VNGE  161 (243)
T ss_dssp             EEEEEETTTTEEEEEEECSSCC--CEEEECSSCEEEECSSSEEEEECTTTC-CEEEEEECEETTEECCCEEEEEE-ETTE
T ss_pred             EEEEEECCcCcEEEEEeCCCCc--eEEeeCCCEEEEECCCCeEEEEeCCCC-eEEEEEEEccCCcccccceeeEE-eCCE
Confidence            99999999987 3333333322  344467777887777899999999876 444443322211  111111111 2677


Q ss_pred             EEEEecCCCcEEEEecCCCceeEEecCC-------------CCCeeEEEecCCCCcEEEEee
Q 042434          453 FIASGSENSQIYIWNRRNSKPIEILSGH-------------SMTVNCVSWNPKRPKMLASAS  501 (517)
Q Consensus       453 ~l~~~~~dg~i~iwd~~~~~~~~~~~~h-------------~~~v~~v~~~~~~~~~l~s~~  501 (517)
                      ..+..-.+..|.+.|..+|+.+..+...             ....++|+|+|++..+++||-
T Consensus       162 lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          162 LLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             EEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             EEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            6666556789999999999988877521             135689999998866666664

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.60  E-value=3.5e-05  Score=74.24  Aligned_cols=237  Identities=10%  Similarity=0.084  Sum_probs=141.2

Q ss_pred             CEEEEEECCC--CCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCC---ceeEEEEeCCCC
Q 042434          269 PVSFVAWSPD--DTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDT---EKGIFMCDCDGN  343 (517)
Q Consensus       269 ~v~~l~~s~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~---~v~i~~~~~~~~  343 (517)
                      ....++|+|+  +..|+.+...+.|+.+|..++...... ........++++++|+ |+.+...+   ...++.++..+.
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~  217 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG  217 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC
Confidence            4578999984  445555544489999999887765544 4555689999999999 44444321   122444443322


Q ss_pred             ee--EeeeCcCCCceEEEEEcc-CCCEEEEEeCCCcEEEEECCCceE--Eeec--cCCCeeEEEEcCCCCEEEEE-eCCC
Q 042434          344 EI--KAWRGTRIPKVLDLAVTP-DGENLISVLSDKDIRILNLGTYAE--RVIS--EEHPITSLSVSVDCKNFIVN-LNSQ  415 (517)
Q Consensus       344 ~~--~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~--~~~~--~~~~i~~~~~s~~~~~l~~~-~~d~  415 (517)
                      ..  ....  .......++++| ++...++-..++.|+.+|..++..  ....  .......++++|++++|+++ ...+
T Consensus       218 ~~~~~~~~--~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~  295 (433)
T 4hw6_A          218 FTERLSLC--NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKH  295 (433)
T ss_dssp             TCCEEEEE--ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTT
T ss_pred             eecccccc--ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCC
Confidence            11  1111  122456788999 666666666778899999875542  1211  12223469999999955554 5578


Q ss_pred             eEEEEEcCCCCc---cceEEeCccc------------CceEEEeecC---------CCCCcEEEEecCCCcEEEEecCCC
Q 042434          416 EIHMWDVAGKWE---KPFKYTGHSQ------------NKYVIRSCFG---------GLDGTFIASGSENSQIYIWNRRNS  471 (517)
Q Consensus       416 ~i~~~d~~~~~~---~~~~~~~~~~------------~~~~i~~~~~---------s~~~~~l~~~~~dg~i~iwd~~~~  471 (517)
                      .|..++......   ....+.+...            .......+++         .++|.+.++-...+.|+.++. +|
T Consensus       296 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G  374 (433)
T 4hw6_A          296 CIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG  374 (433)
T ss_dssp             EEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS
T ss_pred             EEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC
Confidence            899988753211   1122222100            0001122333         566777777777788999885 55


Q ss_pred             ceeEEecCC------------------CCCeeEEEec-CCCCcEEEEeeCCCcEEEeCCC
Q 042434          472 KPIEILSGH------------------SMTVNCVSWN-PKRPKMLASASDDHTIRIWGPC  512 (517)
Q Consensus       472 ~~~~~~~~h------------------~~~v~~v~~~-~~~~~~l~s~~~dg~v~iw~~~  512 (517)
                      ... ++.+.                  -....+|+++ +++ .++++=...+.|+.++++
T Consensus       375 ~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g-~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          375 RVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRK-CFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             EEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTT-EEEEEEGGGTEEEEEEEC
T ss_pred             CEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCC-EEEEEeCCCCEEEEEecC
Confidence            433 33221                  1236789999 566 677777777888887764

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.57  E-value=5.5e-05  Score=75.79  Aligned_cols=258  Identities=14%  Similarity=0.135  Sum_probs=147.1

Q ss_pred             CCEEEEeeCCCcEEEEEecCCCeeeEEEEeccC-------CCCEEEEEEC-CCCC-eEEEEe------CCCeEEEEECCC
Q 042434          234 GEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSH-------QNPVSFVAWS-PDDT-KLLTCG------NAEVLKLWDVET  298 (517)
Q Consensus       234 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h-------~~~v~~l~~s-~~~~-~l~s~~------~dg~i~iwd~~~  298 (517)
                      +..++.++.|+.+.-+|..+++..-. .....+       ..++  +.=. .+++ .+++++      .+|.|..+|..+
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~-~~~~~~~~~~~~~~sP~--v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~t  193 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWK-KKFADHGAGYTMTGAPT--IVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDT  193 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEE-EECSCGGGTCBCCSCCE--EEECTTTCCEEEEECCBCGGGCCBCEEEEECTTT
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEee-ecCCCCCcCcccccCCE--EeCCCcCCcEEEEEeccccccCCCCEEEEEECCC
Confidence            45677788899999999987754311 122111       1111  1100 1233 566654      378999999999


Q ss_pred             CcEEEEeCCCCCce-----------------------------------------EEEEEeCCCCeEEEeeCC-------
Q 042434          299 GICKHTFGDHGFIV-----------------------------------------SSCAWFPDSKRLVCGSSD-------  330 (517)
Q Consensus       299 ~~~~~~~~~~~~~v-----------------------------------------~~i~~~~~~~~l~~~~~d-------  330 (517)
                      |+.+.........+                                         ..+++.|+...++.++.+       
T Consensus       194 G~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~  273 (582)
T 1flg_A          194 GEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTW  273 (582)
T ss_dssp             CCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGG
T ss_pred             CCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCc
Confidence            99877653211000                                         124566677777766631       


Q ss_pred             -----C----------ceeEEEEeCCCCee-EeeeCc-C--------CCceEEEEEc-cCCC---EEEEEeCCCcEEEEE
Q 042434          331 -----T----------EKGIFMCDCDGNEI-KAWRGT-R--------IPKVLDLAVT-PDGE---NLISVLSDKDIRILN  381 (517)
Q Consensus       331 -----~----------~v~i~~~~~~~~~~-~~~~~~-~--------~~~i~~~~~~-~~~~---~l~~~~~dg~i~i~d  381 (517)
                           +          .-.|+-+|..+... -.+... +        ..++. +... .+|+   .++.++.+|.++++|
T Consensus       274 ~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD  352 (582)
T 1flg_A          274 ARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVD  352 (582)
T ss_dssp             GGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEE
T ss_pred             ccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEE
Confidence                 1          02388888865443 333221 1        01121 1221 4674   678899999999999


Q ss_pred             CCCceEEe-eccCC--------------C--------------------------------eeEEEEcCCCCEEEEEe--
Q 042434          382 LGTYAERV-ISEEH--------------P--------------------------------ITSLSVSVDCKNFIVNL--  412 (517)
Q Consensus       382 ~~~~~~~~-~~~~~--------------~--------------------------------i~~~~~s~~~~~l~~~~--  412 (517)
                      ..+++... .....              +                                -..++++|+...+++..  
T Consensus       353 ~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~  432 (582)
T 1flg_A          353 RSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANH  432 (582)
T ss_dssp             TTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEEC
T ss_pred             CCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechh
Confidence            98877221 11000              0                                11346677655555543  


Q ss_pred             -------------------------------CCCeEEEEEcCCCCccceEEeCcccC-ceEEEeecCCCCCcEEEEecCC
Q 042434          413 -------------------------------NSQEIHMWDVAGKWEKPFKYTGHSQN-KYVIRSCFGGLDGTFIASGSEN  460 (517)
Q Consensus       413 -------------------------------~d~~i~~~d~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~d  460 (517)
                                                     .+|.|..||+.++ +...+....... ...+     ...+.+++.|+.|
T Consensus       433 ~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG-~~~W~~~~~~~~~~g~~-----~tagglvf~g~~d  506 (582)
T 1flg_A          433 WKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSG-KVVWEHKEHLPLWAGVL-----ATAGNLVFTGTGD  506 (582)
T ss_dssp             EEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTC-CEEEEEEESSCCCSCCE-----EETTTEEEEECTT
T ss_pred             cceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCC-CEEEEecCCCCCcccce-----EeCCCEEEEECCC
Confidence                                           2577889998876 443333322111 0011     1246678889999


Q ss_pred             CcEEEEecCCCceeEEecCCCCCe-eEEEecCCCCcEEEEee
Q 042434          461 SQIYIWNRRNSKPIEILSGHSMTV-NCVSWNPKRPKMLASAS  501 (517)
Q Consensus       461 g~i~iwd~~~~~~~~~~~~h~~~v-~~v~~~~~~~~~l~s~~  501 (517)
                      |.++.||.++|+.+..+....+.. .-+.|..+|..++++.+
T Consensus       507 g~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~~  548 (582)
T 1flg_A          507 GYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVTV  548 (582)
T ss_dssp             SEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             CcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEEEEc
Confidence            999999999999999887543322 23667678844555443

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.57  E-value=5.8e-05  Score=75.65  Aligned_cols=56  Identities=7%  Similarity=0.047  Sum_probs=39.5

Q ss_pred             CCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCCC
Q 042434          460 NSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSEV  517 (517)
Q Consensus       460 dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~v  517 (517)
                      +|.|+.||+.+|+.+.....+. ++..-.....+ .+++.++.||.++.||.++|+++
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tag-glvf~g~~dg~l~A~D~~tG~~l  520 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAG-NLVFTGTGDGYFKAFDAKSGKEL  520 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETT-TEEEEECTTSEEEEEETTTCCEE
T ss_pred             cceEEEEECCCCCEEEEecCCC-CCcccceEeCC-CEEEEECCCCcEEEEECCCCCEE
Confidence            6889999999999887765332 22221111224 47778999999999999998853

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.55  E-value=4.2e-05  Score=66.67  Aligned_cols=192  Identities=6%  Similarity=-0.031  Sum_probs=118.6

Q ss_pred             cEEEEeCCCC--CceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCee-EeeeCcCCCceEEEEEccCCCEEEEEeCCCc
Q 042434          300 ICKHTFGDHG--FIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEI-KAWRGTRIPKVLDLAVTPDGENLISVLSDKD  376 (517)
Q Consensus       300 ~~~~~~~~~~--~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  376 (517)
                      +.+.++ .|.  .....+.|+ ++.++.+.+.+|.  |..+|..+..+ ... .........+++.. ++..++.-.++.
T Consensus        44 ~Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~--v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g-~~Ly~ltw~~~~  117 (268)
T 3nok_A           44 HIIREY-PHATNAFTQGLVFH-QGHFFESTGHQGT--LRQLSLESAQPVWME-RLGNIFAEGLASDG-ERLYQLTWTEGL  117 (268)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTE--EEECCSSCSSCSEEE-ECTTCCEEEEEECS-SCEEEEESSSCE
T ss_pred             EEEEEE-cCCCccccceEEEE-CCEEEEEcCCCCE--EEEEECCCCcEEeEE-CCCCcceeEEEEeC-CEEEEEEccCCE
Confidence            345555 443  334678887 4566677777788  88888875443 333 22211223344432 234444556889


Q ss_pred             EEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccC--ceEEEeecCCCCCcE
Q 042434          377 IRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQN--KYVIRSCFGGLDGTF  453 (517)
Q Consensus       377 i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~--~~~i~~~~~s~~~~~  453 (517)
                      +.+||..+.+ ...+.....  ...++++++.++++..++.|.++|..+. .....+.....+  ...+.-+.+ .+|+.
T Consensus       118 v~V~D~~Tl~~~~ti~~~~e--GwGLt~Dg~~L~vSdGs~~l~~iDp~T~-~v~~~I~V~~~g~~v~~lNeLe~-~dG~l  193 (268)
T 3nok_A          118 LFTWSGMPPQRERTTRYSGE--GWGLCYWNGKLVRSDGGTMLTFHEPDGF-ALVGAVQVKLRGQPVELINELEC-ANGVI  193 (268)
T ss_dssp             EEEEETTTTEEEEEEECSSC--CCCEEEETTEEEEECSSSEEEEECTTTC-CEEEEEECEETTEECCCEEEEEE-ETTEE
T ss_pred             EEEEECCcCcEEEEEeCCCc--eeEEecCCCEEEEECCCCEEEEEcCCCC-eEEEEEEeCCCCcccccccccEE-eCCEE
Confidence            9999999988 333332222  2334467888888888999999998876 444443332211  111111121 26766


Q ss_pred             EEEecCCCcEEEEecCCCceeEEecCC-------------CCCeeEEEecCCCCcEEEEee
Q 042434          454 IASGSENSQIYIWNRRNSKPIEILSGH-------------SMTVNCVSWNPKRPKMLASAS  501 (517)
Q Consensus       454 l~~~~~dg~i~iwd~~~~~~~~~~~~h-------------~~~v~~v~~~~~~~~~l~s~~  501 (517)
                      .+....+..|.+.|..+|+.+..+...             ....+.|||+|++..+++||-
T Consensus       194 yanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          194 YANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             EEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             EEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            665556789999999999988877531             236789999998867777764

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.54  E-value=0.00024  Score=67.68  Aligned_cols=206  Identities=12%  Similarity=-0.036  Sum_probs=130.5

Q ss_pred             ccccCcEEEEEECCCCCEEEEe-eCCCcEEEEEecCCCe-eeEEEEeccCCCCEEEEEECCC-CCeEEEEeCCCeEEEEE
Q 042434          219 TEHKNEVWFVQFSNNGEYLASS-SSDCSAIIWKVLEDSK-LTLKHTLRSHQNPVSFVAWSPD-DTKLLTCGNAEVLKLWD  295 (517)
Q Consensus       219 ~~h~~~v~~~~~s~~~~~l~t~-~~dg~i~iw~~~~~~~-~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~iwd  295 (517)
                      ......+..++|++.+..|..+ ...+.|..+++..... ......+.........+++.+. +++.++-...+.|.+.+
T Consensus       108 ~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~  187 (400)
T 3p5b_L          108 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD  187 (400)
T ss_dssp             ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEC
T ss_pred             ccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEe
Confidence            3345678899999865555444 4567888888754210 0111223334456788999874 44555556678999999


Q ss_pred             CCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEe-CC
Q 042434          296 VETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVL-SD  374 (517)
Q Consensus       296 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d  374 (517)
                      ++.......+...-.....+++.|.+..|+.+.....-+|+..++++.....+..........+++++++..|+.+. ..
T Consensus       188 ~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~  267 (400)
T 3p5b_L          188 TKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL  267 (400)
T ss_dssp             TTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             CCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCC
Confidence            87665544444444557899999977777666543222399999988766555444445788999999887777665 46


Q ss_pred             CcEEEEECCCce-EEeec---cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 042434          375 KDIRILNLGTYA-ERVIS---EEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK  425 (517)
Q Consensus       375 g~i~i~d~~~~~-~~~~~---~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~  425 (517)
                      +.|..+|+.... .....   .......+++. .+..+++....+.|..+|..++
T Consensus       268 ~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G  321 (400)
T 3p5b_L          268 HSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG  321 (400)
T ss_dssp             TEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSC
T ss_pred             CEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCC
Confidence            789999987655 22222   12345566663 3345555566778888886554

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.54  E-value=0.0002  Score=66.79  Aligned_cols=200  Identities=12%  Similarity=0.005  Sum_probs=128.1

Q ss_pred             cCcEEEEEECCCCCEEE-EeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCe-EEEEeCCCeEEEEECCCC
Q 042434          222 KNEVWFVQFSNNGEYLA-SSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTK-LLTCGNAEVLKLWDVETG  299 (517)
Q Consensus       222 ~~~v~~~~~s~~~~~l~-t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~-l~s~~~dg~i~iwd~~~~  299 (517)
                      ...+..++|++....|. +-...+.|..++.......   ............+++.+.+.. .++-...+.|.+.++...
T Consensus        72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~---~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~  148 (349)
T 3v64_C           72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE---EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA  148 (349)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCceEEEEEeccccEEEEEeccCCceEEEecCCCCce---EEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCC
Confidence            34578999997555554 4445678888887644321   122222344577888875544 455556789999998755


Q ss_pred             cEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEe-CCCcEE
Q 042434          300 ICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVL-SDKDIR  378 (517)
Q Consensus       300 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~  378 (517)
                      .....+...-.....+++.|.+..++.+.....-+|+.++.++.....+..........++++|++..|+.+. ..+.|.
T Consensus       149 ~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~  228 (349)
T 3v64_C          149 HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIE  228 (349)
T ss_dssp             SCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             ceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEE
Confidence            4443443444567899999977766666554323499999988666555444444678999998777666554 467899


Q ss_pred             EEECCCce-EEee-ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 042434          379 ILNLGTYA-ERVI-SEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK  425 (517)
Q Consensus       379 i~d~~~~~-~~~~-~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~  425 (517)
                      .+|+.... .... ........+++ ..+..+++....+.|..++..++
T Consensus       229 ~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G  276 (349)
T 3v64_C          229 RANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTG  276 (349)
T ss_dssp             EEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTC
T ss_pred             EEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCC
Confidence            99987644 2222 23345677777 34555555566778888875443

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.52  E-value=0.00011  Score=64.53  Aligned_cols=204  Identities=14%  Similarity=0.102  Sum_probs=129.1

Q ss_pred             EeCCCCCceEEEEEeCCCCeEEE-eeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEEC
Q 042434          304 TFGDHGFIVSSCAWFPDSKRLVC-GSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL  382 (517)
Q Consensus       304 ~~~~~~~~v~~i~~~~~~~~l~~-~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  382 (517)
                      .+.+-...+..++|+|++..|++ ...++.  |+.+|..+..+..+..........+++.+++.++++.-.++.+.++++
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~--I~~ld~~g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v   98 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAA--IVEMTTNGDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL   98 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEE--EEEEETTCCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCe--EEEEeCCCCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence            44555667999999998776665 555555  999999987777765544457889999998887777667788999887


Q ss_pred             CCceE----Ee-------eccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC--CccceEEeC----cccCceEEEee
Q 042434          383 GTYAE----RV-------ISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK--WEKPFKYTG----HSQNKYVIRSC  445 (517)
Q Consensus       383 ~~~~~----~~-------~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~--~~~~~~~~~----~~~~~~~i~~~  445 (517)
                      .....    ..       .........++++|.++.|+++.......+|.+...  .........    .......+..+
T Consensus        99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l  178 (255)
T 3qqz_A           99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA  178 (255)
T ss_dssp             CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred             CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence            54331    11       122334689999999988888776655555555321  011111111    00001112222


Q ss_pred             cCCC-CCcEEEEecCCCcEEEEecCCCceeEEecCCC---------CCeeEEEecCCCCcEEEEeeCCCcEEEeCCC
Q 042434          446 FGGL-DGTFIASGSENSQIYIWNRRNSKPIEILSGHS---------MTVNCVSWNPKRPKMLASASDDHTIRIWGPC  512 (517)
Q Consensus       446 ~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~---------~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~  512 (517)
                      .+.| .+.+++.......|.++|.. |+.+..+.-..         ..--.|+|.++| +++++ +.-+.++++...
T Consensus       179 ~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G-~lyIv-sE~n~~y~f~~~  252 (255)
T 3qqz_A          179 EFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASG-NIYIV-SEPNRFYRFTPQ  252 (255)
T ss_dssp             EEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTC-CEEEE-ETTTEEEEEEC-
T ss_pred             EEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCC-CEEEE-cCCceEEEEEec
Confidence            3333 56777777788899999965 66666554221         245799999999 55554 777766666543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.51  E-value=7.4e-05  Score=72.11  Aligned_cols=241  Identities=12%  Similarity=0.138  Sum_probs=145.0

Q ss_pred             CEEEEEECC-CCCeEEEE-eCCCeEEEEECCCCcEEEEeCCC---CCceEEEEE-------eCCCCeEEEeeCCC-----
Q 042434          269 PVSFVAWSP-DDTKLLTC-GNAEVLKLWDVETGICKHTFGDH---GFIVSSCAW-------FPDSKRLVCGSSDT-----  331 (517)
Q Consensus       269 ~v~~l~~s~-~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~---~~~v~~i~~-------~~~~~~l~~~~~d~-----  331 (517)
                      ....|+|+| ++..|+.+ ...+.|++.|..++.........   ......++|       ++++..++++...+     
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            356899998 35445544 44467899998887766544322   235899999       99999777776654     


Q ss_pred             ceeEEEEeCCC--Cee-----EeeeCcCCCceEEEEEccC-CCEEEEEeCCCcEEEEECC-------CceE---------
Q 042434          332 EKGIFMCDCDG--NEI-----KAWRGTRIPKVLDLAVTPD-GENLISVLSDKDIRILNLG-------TYAE---------  387 (517)
Q Consensus       332 ~v~i~~~~~~~--~~~-----~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~-------~~~~---------  387 (517)
                      ...++.++...  ...     ..+..  ......++++|+ +.++++-..++.|..+|+.       ++..         
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~--~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~  297 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAA--YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP  297 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEE--ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred             CceEEEEecCCCCceeecccceeecc--CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence            23466665332  111     11211  124567889995 4455566677889999987       3332         


Q ss_pred             ----E--eeccCCCeeEEEEcCCCCEEE-EEeCCCeEEEEEcCCCCcc---ceEEeCc---cc---C-------ceEEEe
Q 042434          388 ----R--VISEEHPITSLSVSVDCKNFI-VNLNSQEIHMWDVAGKWEK---PFKYTGH---SQ---N-------KYVIRS  444 (517)
Q Consensus       388 ----~--~~~~~~~i~~~~~s~~~~~l~-~~~~d~~i~~~d~~~~~~~---~~~~~~~---~~---~-------~~~i~~  444 (517)
                          .  ..........++|+|+|+.++ +-+..+.|+.++.......   ...+.+.   ..   .       ......
T Consensus       298 g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~g  377 (496)
T 3kya_A          298 NTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQG  377 (496)
T ss_dssp             TTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEE
T ss_pred             cccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEE
Confidence                1  112234567999999999644 4456788999776432111   1222221   00   0       011101


Q ss_pred             ecCC-------CCCcEEEEecCCCcEEEEecCCCceeEEecCC------------------------CCCeeEEEecCC-
Q 042434          445 CFGG-------LDGTFIASGSENSQIYIWNRRNSKPIEILSGH------------------------SMTVNCVSWNPK-  492 (517)
Q Consensus       445 ~~~s-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h------------------------~~~v~~v~~~~~-  492 (517)
                      ++..       ++|.++++-..+..|+.++ .+|. +.++.+.                        -....+|+++++ 
T Consensus       378 v~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~  455 (496)
T 3kya_A          378 VFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVK  455 (496)
T ss_dssp             EEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTT
T ss_pred             EEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCC
Confidence            2222       4567777777788899998 4564 3344221                        123678999997 


Q ss_pred             CCcEEEEeeCCCcEEEeCCCCC
Q 042434          493 RPKMLASASDDHTIRIWGPCQS  514 (517)
Q Consensus       493 ~~~~l~s~~~dg~v~iw~~~~~  514 (517)
                      + .++++=.....||.+++...
T Consensus       456 g-~lyVaD~~N~rIrki~~~~~  476 (496)
T 3kya_A          456 E-MFYVHDQVGHTIRTISMEQE  476 (496)
T ss_dssp             T-EEEEEETTTTEEEEEEECCC
T ss_pred             C-EEEEEeCCCCEEEEEECCCC
Confidence            6 67777777888999887654

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.50  E-value=0.00016  Score=68.67  Aligned_cols=201  Identities=12%  Similarity=0.018  Sum_probs=128.6

Q ss_pred             ccCcEEEEEECCCCCEE-EEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeE-EEEeCCCeEEEEECCC
Q 042434          221 HKNEVWFVQFSNNGEYL-ASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKL-LTCGNAEVLKLWDVET  298 (517)
Q Consensus       221 h~~~v~~~~~s~~~~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l-~s~~~dg~i~iwd~~~  298 (517)
                      ....+..++|++.+..| ++-...+.|..++......   ...+.........+++.+.+..| ++-...+.|.+.++..
T Consensus       114 ~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~---~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg  190 (386)
T 3v65_B          114 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV---EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG  190 (386)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE---EEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTS
T ss_pred             CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc---EEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCC
Confidence            34457789999755544 4545667888888764421   12222223345678888755444 5555577898888865


Q ss_pred             CcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEe-CCCcE
Q 042434          299 GICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVL-SDKDI  377 (517)
Q Consensus       299 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i  377 (517)
                      ......+...-.....+++.|.+..++.+.....-+|+.++.++.....+..........++++|++..|+.+. ..+.|
T Consensus       191 ~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I  270 (386)
T 3v65_B          191 AHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVI  270 (386)
T ss_dssp             CSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEE
T ss_pred             CceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEE
Confidence            54444444444567899999987777766654434499999988766555444444678999998777666554 46789


Q ss_pred             EEEECCCce-EEee-ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 042434          378 RILNLGTYA-ERVI-SEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK  425 (517)
Q Consensus       378 ~i~d~~~~~-~~~~-~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~  425 (517)
                      ..+|+.... .... ........+++ ..+..+++....+.|..+|..++
T Consensus       271 ~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G  319 (386)
T 3v65_B          271 ERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTG  319 (386)
T ss_dssp             EEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTC
T ss_pred             EEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCC
Confidence            999987544 2222 23345677777 34455556666778888885443

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.49  E-value=2.7e-06  Score=87.16  Aligned_cols=240  Identities=12%  Similarity=0.092  Sum_probs=138.3

Q ss_pred             EEEECC-CCCeEEEEeCCC-----------eEEEEECCCCcEEE--EeC-CCCCceEEEEEeCCCCeEEEeeCCCceeEE
Q 042434          272 FVAWSP-DDTKLLTCGNAE-----------VLKLWDVETGICKH--TFG-DHGFIVSSCAWFPDSKRLVCGSSDTEKGIF  336 (517)
Q Consensus       272 ~l~~s~-~~~~l~s~~~dg-----------~i~iwd~~~~~~~~--~~~-~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~  336 (517)
                      ++++.+ +++.++.|+.+.           .+.+||..+++...  .+. .+.....++++..+++.+++|+.++. .++
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~-~v~  268 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAK-KTS  268 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTT-CEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCC-ceE
Confidence            556667 888888887543           58899998876322  221 23333445778889999999986543 389


Q ss_pred             EEeCCCCeeEeeeCcCCC-ceEEEEEccCCCEEEEEe-CC-----CcEEEEECCCceEEeec------cCCCeeEEEEcC
Q 042434          337 MCDCDGNEIKAWRGTRIP-KVLDLAVTPDGENLISVL-SD-----KDIRILNLGTYAERVIS------EEHPITSLSVSV  403 (517)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~-~d-----g~i~i~d~~~~~~~~~~------~~~~i~~~~~s~  403 (517)
                      .||.....-......... .-.+++..++++.++.|+ .+     ..+.+||..+..-....      ....-....+..
T Consensus       269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~  348 (656)
T 1k3i_A          269 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS  348 (656)
T ss_dssp             EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred             EecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec
Confidence            999876554433222211 224566677999999988 34     57999999887622211      000000112234


Q ss_pred             CCCEEEEEeCC---------CeEEEEEcCCCCccceEEeCccc-------CceEEEeecCCCCCcEEEEecCCC------
Q 042434          404 DCKNFIVNLNS---------QEIHMWDVAGKWEKPFKYTGHSQ-------NKYVIRSCFGGLDGTFIASGSENS------  461 (517)
Q Consensus       404 ~~~~l~~~~~d---------~~i~~~d~~~~~~~~~~~~~~~~-------~~~~i~~~~~s~~~~~l~~~~~dg------  461 (517)
                      ++..++.++.+         ..+..||..+..- .........       .......++-..+++++++|+.++      
T Consensus       349 ~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w-~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~  427 (656)
T 1k3i_A          349 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD-VKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDA  427 (656)
T ss_dssp             TCSCCEEECGGGCEEECCSSSEEEEEECSTTCE-EEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBC
T ss_pred             CCceEEEECCCCcEEEecCccceeeeecCCcce-eecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCc
Confidence            55555555444         3567888765421 111111110       000111111024788888888543      


Q ss_pred             -----cEEEEecCCCceeEEe--cCCCCCe-eEEEecCCCCcEEEEeeCC-----------CcEEEeCCCCC
Q 042434          462 -----QIYIWNRRNSKPIEIL--SGHSMTV-NCVSWNPKRPKMLASASDD-----------HTIRIWGPCQS  514 (517)
Q Consensus       462 -----~i~iwd~~~~~~~~~~--~~h~~~v-~~v~~~~~~~~~l~s~~~d-----------g~v~iw~~~~~  514 (517)
                           .|.+||..+.......  ..+.... .+.+..|++ ++++.||.+           ..+.+||+.+.
T Consensus       428 ~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g-~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~  498 (656)
T 1k3i_A          428 TTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDG-STFITGGQRRGIPFEDSTPVFTPEIYVPEQD  498 (656)
T ss_dssp             CCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTS-CEEEECCBSBCCTTCCCSBCCCCEEEEGGGT
T ss_pred             CCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCC-CEEEECCcccCcCcCCCCcccceEEEcCCCC
Confidence                 6888888876654433  2222222 344666888 788988865           46888887653

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.48  E-value=0.00047  Score=63.36  Aligned_cols=202  Identities=12%  Similarity=-0.012  Sum_probs=127.8

Q ss_pred             ccCcEEEEEECCCCCEEE-EeeCCCcEEEEEecCC---CeeeEEEEeccCCCCEEEEEECCCCCeE-EEEeCCCeEEEEE
Q 042434          221 HKNEVWFVQFSNNGEYLA-SSSSDCSAIIWKVLED---SKLTLKHTLRSHQNPVSFVAWSPDDTKL-LTCGNAEVLKLWD  295 (517)
Q Consensus       221 h~~~v~~~~~s~~~~~l~-t~~~dg~i~iw~~~~~---~~~~~~~~~~~h~~~v~~l~~s~~~~~l-~s~~~dg~i~iwd  295 (517)
                      ....+..++|++.+..|+ +-...+.|..++....   ....  ..+...-.....+++.+.+..| ++-...+.|.+.+
T Consensus        28 ~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~--~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~  105 (316)
T 1ijq_A           28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD--TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD  105 (316)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE--EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccE--EEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEe
Confidence            345678999998655454 4455688988888641   1111  1222222455788888655444 5556678999999


Q ss_pred             CCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEe-CC
Q 042434          296 VETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVL-SD  374 (517)
Q Consensus       296 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d  374 (517)
                      .........+.........+++.|.+..++.+.....-+|+.++.++.....+..........+++++++..|+.+. ..
T Consensus       106 ~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~  185 (316)
T 1ijq_A          106 TKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL  185 (316)
T ss_dssp             TTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             CCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCC
Confidence            87554433333334567899999977766666554223489999888766555433445688999999877776655 45


Q ss_pred             CcEEEEECCCce-EEeec---cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 042434          375 KDIRILNLGTYA-ERVIS---EEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK  425 (517)
Q Consensus       375 g~i~i~d~~~~~-~~~~~---~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~  425 (517)
                      +.|..+|+.... .....   .......+++. .+..+++....+.|..++..++
T Consensus       186 ~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g  239 (316)
T 1ijq_A          186 HSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG  239 (316)
T ss_dssp             TEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred             CeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCC
Confidence            689999997644 22222   12345677775 3555556666788888887554

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.46  E-value=3.4e-05  Score=74.28  Aligned_cols=153  Identities=11%  Similarity=0.131  Sum_probs=94.6

Q ss_pred             cEEEEEECC-CCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCC-C----eEEEEECC
Q 042434          224 EVWFVQFSN-NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNA-E----VLKLWDVE  297 (517)
Q Consensus       224 ~v~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-g----~i~iwd~~  297 (517)
                      ....++++| ++..|..+...+.|+.+|...+ ..   ..+.........++|+++++.|+++... +    .+.+.+. 
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~-~v---~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-  212 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKE-YV---STVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-  212 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTT-EE---EEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCC-EE---EEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-
Confidence            557889998 4555666655578888887543 22   2233345668999999999966665542 2    2333443 


Q ss_pred             CCcEE--EEeCCCCCceEEEEEeC-CCCeEEEeeCCCceeEEEEeCCCCeeEe-eeCcCCCceEEEEEccCCCEEEEE-e
Q 042434          298 TGICK--HTFGDHGFIVSSCAWFP-DSKRLVCGSSDTEKGIFMCDCDGNEIKA-WRGTRIPKVLDLAVTPDGENLISV-L  372 (517)
Q Consensus       298 ~~~~~--~~~~~~~~~v~~i~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~-~  372 (517)
                      .+...  ..+. .......++++| ++..+++-..++.  |+.++..+..... ...........++++|+|++++.+ .
T Consensus       213 ~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~--V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~  289 (430)
T 3tc9_A          213 ESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQ--VFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVV  289 (430)
T ss_dssp             GGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTE--EEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEET
T ss_pred             CCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCE--EEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEEC
Confidence            33221  2221 123356788999 5665555545555  9999998766522 222222357789999999955544 5


Q ss_pred             CCCcEEEEECCC
Q 042434          373 SDKDIRILNLGT  384 (517)
Q Consensus       373 ~dg~i~i~d~~~  384 (517)
                      ..+.|..++...
T Consensus       290 ~~~~I~~~~~d~  301 (430)
T 3tc9_A          290 NQHYILRSDYDW  301 (430)
T ss_dssp             TTTEEEEEEEET
T ss_pred             CCCEEEEEeCCc
Confidence            677899987653

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.41  E-value=0.00064  Score=62.38  Aligned_cols=226  Identities=11%  Similarity=0.020  Sum_probs=137.1

Q ss_pred             CCcEEEEEecCCC-eeeEEEEeccCCCCEEEEEECCCCCeE-EEEeCCCeEEEEECCCCcE-EEEeCCCCCceEEEEEeC
Q 042434          243 DCSAIIWKVLEDS-KLTLKHTLRSHQNPVSFVAWSPDDTKL-LTCGNAEVLKLWDVETGIC-KHTFGDHGFIVSSCAWFP  319 (517)
Q Consensus       243 dg~i~iw~~~~~~-~~~~~~~~~~h~~~v~~l~~s~~~~~l-~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~i~~~~  319 (517)
                      ...|+..++.... .....  +. ....+..++|++.+..| .+-...+.|..+++..+.. ...+...-.....+++.+
T Consensus        12 ~~~I~~i~l~~~~~~~~~~--~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~   88 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIV--VG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDW   88 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEE--EE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEET
T ss_pred             cCeEEEEECCCCceEEEEE--ec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEc
Confidence            3578888886543 11111  11 12346789999865555 4545677899999876532 112222223456788887


Q ss_pred             CCCeEEEe-eCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeC--CCcEEEEECCCce-EEee-ccCC
Q 042434          320 DSKRLVCG-SSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLS--DKDIRILNLGTYA-ERVI-SEEH  394 (517)
Q Consensus       320 ~~~~l~~~-~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~-~~~~-~~~~  394 (517)
                      .+..|+.+ ...+.  |..++..+.....+..........+++.|.+..++.+..  .+.|..+++.... .... ..-.
T Consensus        89 ~~g~ly~~d~~~~~--I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~  166 (318)
T 3sov_A           89 LGEKLYWTDSETNR--IEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIY  166 (318)
T ss_dssp             TTTEEEEEETTTTE--EEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCS
T ss_pred             CCCeEEEEECCCCE--EEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCC
Confidence            55555544 34455  888888876655554444456789999997766666653  5789999887544 2222 2345


Q ss_pred             CeeEEEEcCCCCEEEEE-eCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCce
Q 042434          395 PITSLSVSVDCKNFIVN-LNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKP  473 (517)
Q Consensus       395 ~i~~~~~s~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  473 (517)
                      ....+++++++..|+.+ +..+.|..+|+.+.... ....+.......+..   . .+.++++-...+.|..++..+|+.
T Consensus       167 ~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~-~~~~~~~~~P~glav---~-~~~lywtd~~~~~V~~~~~~~G~~  241 (318)
T 3sov_A          167 WPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQ-AVVKGSLPHPFALTL---F-EDILYWTDWSTHSILACNKYTGEG  241 (318)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEECSCCSCEEEEEE---E-TTEEEEEETTTTEEEEEETTTCCS
T ss_pred             CccEEEEeccCCEEEEEECCCCEEEEEcCCCCceE-EEecCCCCCceEEEE---e-CCEEEEEecCCCeEEEEECCCCCc
Confidence            67899999976666555 55778999998754222 112211122222222   2 345566666778899999877776


Q ss_pred             eEEec
Q 042434          474 IEILS  478 (517)
Q Consensus       474 ~~~~~  478 (517)
                      ...+.
T Consensus       242 ~~~i~  246 (318)
T 3sov_A          242 LREIH  246 (318)
T ss_dssp             CEEEE
T ss_pred             eEEEe
Confidence            55554

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.38  E-value=0.0006  Score=61.57  Aligned_cols=207  Identities=10%  Similarity=0.110  Sum_probs=132.2

Q ss_pred             eccccCcEEEEEECCCCCEEEEee-CCCcEEEEEecCCCeeeEEEEecc----CCC--CEEEEEE---CCCCCeEEEEe-
Q 042434          218 LTEHKNEVWFVQFSNNGEYLASSS-SDCSAIIWKVLEDSKLTLKHTLRS----HQN--PVSFVAW---SPDDTKLLTCG-  286 (517)
Q Consensus       218 l~~h~~~v~~~~~s~~~~~l~t~~-~dg~i~iw~~~~~~~~~~~~~~~~----h~~--~v~~l~~---s~~~~~l~s~~-  286 (517)
                      +....--..+++|.+....+..++ ..|+|..|+...+.. ... .+.+    ...  .+..+.|   .|+++++++.. 
T Consensus         8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~-~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~   85 (334)
T 2p9w_A            8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSH-FNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKN   85 (334)
T ss_dssp             ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCE-EEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEE
T ss_pred             ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeE-EEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcc
Confidence            333444455788988555555555 789999999864322 222 3322    111  3689999   68877777543 


Q ss_pred             ------------CCCeEEEEECC---CCcEEEEeC--C-----------CCCceEEEEEeCCCCeEEEeeCC-CceeEEE
Q 042434          287 ------------NAEVLKLWDVE---TGICKHTFG--D-----------HGFIVSSCAWFPDSKRLVCGSSD-TEKGIFM  337 (517)
Q Consensus       287 ------------~dg~i~iwd~~---~~~~~~~~~--~-----------~~~~v~~i~~~~~~~~l~~~~~d-~~v~i~~  337 (517)
                                  .+..|..+|+.   +++.+....  .           .......++..++|+..++++.. +.  |+.
T Consensus        86 ~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~--I~r  163 (334)
T 2p9w_A           86 AKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPA--IAR  163 (334)
T ss_dssp             TTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCE--EEE
T ss_pred             cccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCe--EEE
Confidence                        25789999998   777655442  1           11357889999999999999888 87  999


Q ss_pred             EeCCCCeeEeeeCcC-----CCceEEEEEccCCCEEEEEeCCCcEEEEECCCceE--Eee---c---cCCCeeEE-EEcC
Q 042434          338 CDCDGNEIKAWRGTR-----IPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAE--RVI---S---EEHPITSL-SVSV  403 (517)
Q Consensus       338 ~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~---~---~~~~i~~~-~~s~  403 (517)
                      ++.++.....+....     ....+.|+++|+|+.|++....|.+..+|+.....  ...   .   .......+ ..-.
T Consensus       164 V~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~  243 (334)
T 2p9w_A          164 VSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPV  243 (334)
T ss_dssp             ECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEE
T ss_pred             EeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCccccccccc
Confidence            999987655443211     12366899999999999887899999999885432  111   1   11223443 3334


Q ss_pred             CCCEEEEEe-CCCeEEEEEcCCCCccc
Q 042434          404 DCKNFIVNL-NSQEIHMWDVAGKWEKP  429 (517)
Q Consensus       404 ~~~~l~~~~-~d~~i~~~d~~~~~~~~  429 (517)
                      +|+.++++. ..+.+.+.+... |...
T Consensus       244 ~G~vllV~~~~~~~~~l~S~Dg-W~sa  269 (334)
T 2p9w_A          244 GNESVLVGARAPYAISFRSWDN-WKSA  269 (334)
T ss_dssp             TTEEEEEEEETTEEEEEECSST-TSEE
T ss_pred             CCEEEEEEcCCCCEEEEECCCC-ccee
Confidence            677755544 455555555433 4433

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.35  E-value=3.5e-05  Score=67.22  Aligned_cols=152  Identities=8%  Similarity=0.025  Sum_probs=103.4

Q ss_pred             CCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEeeccCCCeeE--EEEcCCCCEEEEEeCCCeEEEEEcCCCCcc
Q 042434          352 RIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVISEEHPITS--LSVSVDCKNFIVNLNSQEIHMWDVAGKWEK  428 (517)
Q Consensus       352 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~--~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~  428 (517)
                      .......+.|+ ++.+.++.+.+|.|+++|+.+++ .... .......  +++.. ++.+.+.-.++.+.+||..+. ..
T Consensus        53 ~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl-~~  128 (268)
T 3nok_A           53 TNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPP-QR  128 (268)
T ss_dssp             TTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTT-EE
T ss_pred             CccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcC-cE
Confidence            33456788887 45666777788899999999988 2222 3333333  44433 234444556889999999877 55


Q ss_pred             ceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCC-----CCeeEEEecCCCCcEEEEeeCC
Q 042434          429 PFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHS-----MTVNCVSWNPKRPKMLASASDD  503 (517)
Q Consensus       429 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~-----~~v~~v~~~~~~~~~l~s~~~d  503 (517)
                      ...+.....+ +.+     .+|++.|+.+..++.|.++|..+.+.+.++....     ..++.+.|. +| .+++..-.+
T Consensus       129 ~~ti~~~~eG-wGL-----t~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG-~lyanvw~s  200 (268)
T 3nok_A          129 ERTTRYSGEG-WGL-----CYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NG-VIYANIWHS  200 (268)
T ss_dssp             EEEEECSSCC-CCE-----EEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTC
T ss_pred             EEEEeCCCce-eEE-----ecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CC-EEEEEECCC
Confidence            5555543222 222     2467777777778999999999999888876421     245778887 66 666666678


Q ss_pred             CcEEEeCCCCCC
Q 042434          504 HTIRIWGPCQSS  515 (517)
Q Consensus       504 g~v~iw~~~~~~  515 (517)
                      +.|.+-|+.+++
T Consensus       201 ~~I~vIDp~TG~  212 (268)
T 3nok_A          201 SDVLEIDPATGT  212 (268)
T ss_dssp             SEEEEECTTTCB
T ss_pred             CeEEEEeCCCCc
Confidence            899999999886

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.33  E-value=0.0016  Score=67.38  Aligned_cols=224  Identities=10%  Similarity=-0.005  Sum_probs=138.2

Q ss_pred             CcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEE-EEeCCCeEEEEECCCC----cEEEEeCCCCCceEEEEEe
Q 042434          244 CSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLL-TCGNAEVLKLWDVETG----ICKHTFGDHGFIVSSCAWF  318 (517)
Q Consensus       244 g~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~i~~~  318 (517)
                      ..|+..++..... .   .+......+..++|++.+..|+ +-...+.|+.+++...    .....+.........|++.
T Consensus       404 ~~Ir~i~l~~~~~-~---~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD  479 (791)
T 3m0c_C          404 HEVRKMTLDRSEY-T---SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD  479 (791)
T ss_dssp             SSEEEECTTSCCC-E---EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEE
T ss_pred             cceeEeeccCCcc-e---eeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeee
Confidence            4577666653322 1   1223456678999998555554 5455678999988652    2233443344556789998


Q ss_pred             CCCCeEEEeeC-CCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeC--CCcEEEEECCCceEEee--ccC
Q 042434          319 PDSKRLVCGSS-DTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLS--DKDIRILNLGTYAERVI--SEE  393 (517)
Q Consensus       319 ~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~--~~~  393 (517)
                      +.++.|+.+.. .+.  |...++.+.....+..........|++.|.+..|+....  .+.|.+.++.......+  ...
T Consensus       480 ~~~~~LY~tD~~~~~--I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l  557 (791)
T 3m0c_C          480 WIHSNIYWTDSVLGT--VSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENI  557 (791)
T ss_dssp             TTTTEEEEEETTTTE--EEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSC
T ss_pred             ecCCcEEEEecCCCe--EEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCC
Confidence            87766665544 444  888999887766665544456889999998766666553  26899999876653322  233


Q ss_pred             CCeeEEEEcCCCCEEEEE-eCCCeEEEEEcCCCCccceEEeCc--ccCceEEEeecCCCCCcEEEEecCCCcEEEEecCC
Q 042434          394 HPITSLSVSVDCKNFIVN-LNSQEIHMWDVAGKWEKPFKYTGH--SQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRN  470 (517)
Q Consensus       394 ~~i~~~~~s~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~  470 (517)
                      .....+++++.+..|+.+ ...+.|..+++.+... .......  ......+..    ..+.++++-...+.|...|..+
T Consensus       558 ~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~-~~v~~~~~~l~~P~glav----~~~~lYwtD~~~~~I~~~dk~t  632 (791)
T 3m0c_C          558 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAV----FEDKVFWTDIINEAIFSANRLT  632 (791)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEE----ETTEEEEEETTTTEEEEEETTT
T ss_pred             CCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce-EEEecCCCccCCCCEEEE----eCCEEEEEECCCCEEEEEeCCC
Confidence            578899999876666655 4567899999876522 2222221  112222222    1345555555667888888777


Q ss_pred             CceeEEec
Q 042434          471 SKPIEILS  478 (517)
Q Consensus       471 ~~~~~~~~  478 (517)
                      |+.+..+.
T Consensus       633 G~~~~~l~  640 (791)
T 3m0c_C          633 GSDVNLLA  640 (791)
T ss_dssp             CCCCEEEE
T ss_pred             CcceEEee
Confidence            76655554

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.32  E-value=0.00029  Score=67.83  Aligned_cols=194  Identities=9%  Similarity=0.082  Sum_probs=112.8

Q ss_pred             CcEEEEEECCC--CCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCC---Ce-EEEEEC
Q 042434          223 NEVWFVQFSNN--GEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNA---EV-LKLWDV  296 (517)
Q Consensus       223 ~~v~~~~~s~~--~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---g~-i~iwd~  296 (517)
                      .....++|+|+  +..|..+...+.|+.++..++. .   ..+.........++|+++|+++++....   .. +...+.
T Consensus       139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~-v---~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~  214 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQY-V---DIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTR  214 (433)
T ss_dssp             SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTE-E---EEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECG
T ss_pred             CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCE-E---EEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEEC
Confidence            34678999984  3345444444889999875442 2   2333345668999999999944443311   12 333332


Q ss_pred             CCCcE-EEEeCCCCCceEEEEEeC-CCCeEEEeeCCCceeEEEEeCCCCee-Eee-eCcCCCceEEEEEccCCCEEEEEe
Q 042434          297 ETGIC-KHTFGDHGFIVSSCAWFP-DSKRLVCGSSDTEKGIFMCDCDGNEI-KAW-RGTRIPKVLDLAVTPDGENLISVL  372 (517)
Q Consensus       297 ~~~~~-~~~~~~~~~~v~~i~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~-~~~-~~~~~~~i~~~~~~~~~~~l~~~~  372 (517)
                      ..+.. ...+. .......+++.| ++.++++-..++.  |+.++..+..+ ..+ ..........++++|+++.|+.+.
T Consensus       215 ~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~--V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad  291 (433)
T 4hw6_A          215 ASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAM--ISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIY  291 (433)
T ss_dssp             GGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSE--EEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEE
T ss_pred             CCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCE--EEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEe
Confidence            22211 01111 123346688899 5655555555565  89999874433 222 222222345799999999555554


Q ss_pred             -CCCcEEEEECCC--ce----EEeec---------------cCCCeeEEEE---------cCCCCEEEEEeCCCeEEEEE
Q 042434          373 -SDKDIRILNLGT--YA----ERVIS---------------EEHPITSLSV---------SVDCKNFIVNLNSQEIHMWD  421 (517)
Q Consensus       373 -~dg~i~i~d~~~--~~----~~~~~---------------~~~~i~~~~~---------s~~~~~l~~~~~d~~i~~~d  421 (517)
                       ..+.|+.++...  ..    .....               .-.....+++         .+++..+++-...+.|+.++
T Consensus       292 ~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~  371 (433)
T 4hw6_A          292 NGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLT  371 (433)
T ss_dssp             TTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEEC
T ss_pred             CCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEEC
Confidence             567899988652  21    11111               1123567888         67777777777788999998


Q ss_pred             cC
Q 042434          422 VA  423 (517)
Q Consensus       422 ~~  423 (517)
                      ..
T Consensus       372 ~~  373 (433)
T 4hw6_A          372 PE  373 (433)
T ss_dssp             TT
T ss_pred             CC
Confidence            53

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.30  E-value=0.00011  Score=63.45  Aligned_cols=155  Identities=12%  Similarity=0.107  Sum_probs=102.3

Q ss_pred             cCCCceEEEEEccCCCEEEEEeCC--CcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEE-EeCCCeEEEEEcCCCC
Q 042434          351 TRIPKVLDLAVTPDGENLISVLSD--KDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIV-NLNSQEIHMWDVAGKW  426 (517)
Q Consensus       351 ~~~~~i~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~-~~~d~~i~~~d~~~~~  426 (517)
                      ........+.|++ +....+.+..  ..|+.+|+.+++ ..............+.+.++.+.. .-.++.+.+||..+. 
T Consensus        18 d~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl-   95 (243)
T 3mbr_X           18 DTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATL-   95 (243)
T ss_dssp             CTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTT-
T ss_pred             CCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcC-
Confidence            3334677888886 5555555554  489999999988 333333334433333334445444 456889999999876 


Q ss_pred             ccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCC-----CCeeEEEecCCCCcEEEEee
Q 042434          427 EKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHS-----MTVNCVSWNPKRPKMLASAS  501 (517)
Q Consensus       427 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~-----~~v~~v~~~~~~~~~l~s~~  501 (517)
                      .....+..... .+.+.     +++..|+.+..++.|.++|..+.+.+.++.-..     ..++.+.|. +| .+++..-
T Consensus        96 ~~~~ti~~~~~-Gwglt-----~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G-~lyanvw  167 (243)
T 3mbr_X           96 TPRARFRYPGE-GWALT-----SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NG-ELLANVW  167 (243)
T ss_dssp             EEEEEEECSSC-CCEEE-----ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEET
T ss_pred             cEEEEEeCCCC-ceEEe-----eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CC-EEEEEEC
Confidence            55555554332 22332     456666666668899999999999888876422     356777876 56 5666665


Q ss_pred             CCCcEEEeCCCCCC
Q 042434          502 DDHTIRIWGPCQSS  515 (517)
Q Consensus       502 ~dg~v~iw~~~~~~  515 (517)
                      .+..|.+.|+.+++
T Consensus       168 ~s~~I~vIDp~tG~  181 (243)
T 3mbr_X          168 LTSRIARIDPASGK  181 (243)
T ss_dssp             TTTEEEEECTTTCB
T ss_pred             CCCeEEEEECCCCC
Confidence            67899999999886

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.24  E-value=0.001  Score=60.95  Aligned_cols=200  Identities=13%  Similarity=-0.037  Sum_probs=127.4

Q ss_pred             CcEEEEEECCC-CCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCC-CeEEEEeCCCeEEEEECCCCc
Q 042434          223 NEVWFVQFSNN-GEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDD-TKLLTCGNAEVLKLWDVETGI  300 (517)
Q Consensus       223 ~~v~~~~~s~~-~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~  300 (517)
                      ..+..++|++. +.+.++-...+.|..++..........  +...-.....+++.+.+ ++.++-...+.|.++++....
T Consensus        35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~--~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~  112 (318)
T 3sov_A           35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNV--VVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL  112 (318)
T ss_dssp             EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEE--EEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEE--EcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc
Confidence            45678999985 444455556778888888654221111  11222345678888744 444555567899999986554


Q ss_pred             EEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEe-CCCcEEE
Q 042434          301 CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVL-SDKDIRI  379 (517)
Q Consensus       301 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i  379 (517)
                      ....+.........+++.|.+..++.+.....-+|+.++.++.....+..........+++++++..|+.+. ..+.|..
T Consensus       113 ~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~  192 (318)
T 3sov_A          113 RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHK  192 (318)
T ss_dssp             CEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEE
Confidence            333333445567899999977777666543233499999987665554433344678999999777666654 5678999


Q ss_pred             EECCCce-EEeec-cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 042434          380 LNLGTYA-ERVIS-EEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK  425 (517)
Q Consensus       380 ~d~~~~~-~~~~~-~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~  425 (517)
                      +|+.... ..... .......+++. .+..+++....+.|..++..++
T Consensus       193 ~d~dG~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G  239 (318)
T 3sov_A          193 SNLDGTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILACNKYTG  239 (318)
T ss_dssp             EETTSCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred             EcCCCCceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCC
Confidence            9987544 22222 34456677775 3345555556788888888554

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.23  E-value=0.0017  Score=59.97  Aligned_cols=231  Identities=8%  Similarity=-0.014  Sum_probs=123.9

Q ss_pred             cCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcE
Q 042434          222 KNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGIC  301 (517)
Q Consensus       222 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~  301 (517)
                      ...+.++.|++ +..++. +.+|.|.. ..+.+..+........+.+.+..+.+.+++..++++ .+|.|.. ..+.|+.
T Consensus        79 ~~~~~~i~~~~-~~~~~~-g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~t  153 (327)
T 2xbg_A           79 DYRFNSVSFQG-NEGWIV-GEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKN  153 (327)
T ss_dssp             CCEEEEEEEET-TEEEEE-EETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSS
T ss_pred             CccEEEEEecC-CeEEEE-ECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCC
Confidence            45788999986 444444 45564433 333345554333222234567888887777666655 4554422 1223432


Q ss_pred             E-EEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCC-CCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEE
Q 042434          302 K-HTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD-GNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRI  379 (517)
Q Consensus       302 ~-~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  379 (517)
                      - .........+..+.+.+++.+++++. +|.  ++.-... +..-..........+..+.+.+++..+ +++.+|.+++
T Consensus       154 W~~~~~~~~~~~~~~~~~~~~~~~~~g~-~G~--~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~  229 (327)
T 2xbg_A          154 WQALVQEAIGVMRNLNRSPSGEYVAVSS-RGS--FYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLW-MIVNGGKIAF  229 (327)
T ss_dssp             EEEEECSCCCCEEEEEECTTSCEEEEET-TSS--EEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEE-EEETTTEEEE
T ss_pred             CEEeecCCCcceEEEEEcCCCcEEEEEC-CCc--EEEEeCCCCCceeECCCCCCCccceeEECCCCCEE-EEeCCceEEE
Confidence            2 22234556788999999887776654 454  5544332 333333333334478889999988755 4556788877


Q ss_pred             EECCCceEEe---ec---cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEe---CcccCceEEEeecCCCC
Q 042434          380 LNLGTYAERV---IS---EEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYT---GHSQNKYVIRSCFGGLD  450 (517)
Q Consensus       380 ~d~~~~~~~~---~~---~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~---~~~~~~~~i~~~~~s~~  450 (517)
                      .+...+....   ..   ....+..+.+.+++..++++. ++.+ ++....+ ..-....   ......+.+..   .++
T Consensus       230 s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG-~tW~~~~~~~~~~~~~~~v~~---~~~  303 (327)
T 2xbg_A          230 SDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGG-QTWQQDVDVKKVPSNFYKILF---FSP  303 (327)
T ss_dssp             EETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTT-SSCEECGGGTTSSSCCCEEEE---EET
T ss_pred             ecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCC-cccEEcCccCCCCCCeEEEEE---ECC
Confidence            6533233111   11   223578888998777666554 5655 3333333 1111111   11122222322   334


Q ss_pred             CcEEEEecCCCcEEEEec
Q 042434          451 GTFIASGSENSQIYIWNR  468 (517)
Q Consensus       451 ~~~l~~~~~dg~i~iwd~  468 (517)
                      +. +++++.+|.|.-++-
T Consensus       304 ~~-~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          304 DQ-GFILGQKGILLRYVT  320 (327)
T ss_dssp             TE-EEEECSTTEEEEECC
T ss_pred             Cc-eEEEcCCceEEEEcC
Confidence            44 556667888776653

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.23  E-value=0.0015  Score=61.00  Aligned_cols=202  Identities=14%  Similarity=0.128  Sum_probs=110.3

Q ss_pred             EeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEec---cCCCCEEEEEECCC---CCeEEEEeC-C-
Q 042434          217 ILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLR---SHQNPVSFVAWSPD---DTKLLTCGN-A-  288 (517)
Q Consensus       217 ~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~---~h~~~v~~l~~s~~---~~~l~s~~~-d-  288 (517)
                      .+...-...+.++|.|+|+++++ ..+|.|.+++  ++ ....+..+.   ........++|+|+   +..|+.+.. . 
T Consensus        25 ~va~~l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g-~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~  100 (352)
T 2ism_A           25 EVVGGLEVPWALAFLPDGGMLIA-ERPGRIRLFR--EG-RLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAE  100 (352)
T ss_dssp             EEECCCSCEEEEEECTTSCEEEE-ETTTEEEEEE--TT-EEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECT
T ss_pred             EEECCCCCceEEEEcCCCeEEEE-eCCCeEEEEE--CC-CccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCC
Confidence            33333456789999999996555 5669999888  23 333333222   22456899999998   555544433 2 


Q ss_pred             ----CeEEEEECCCCc-----EE-EEeC---CCCCceEEEEEeCCCCeEEEeeCCCc-----------eeEEEEeCCCC-
Q 042434          289 ----EVLKLWDVETGI-----CK-HTFG---DHGFIVSSCAWFPDSKRLVCGSSDTE-----------KGIFMCDCDGN-  343 (517)
Q Consensus       289 ----g~i~iwd~~~~~-----~~-~~~~---~~~~~v~~i~~~~~~~~l~~~~~d~~-----------v~i~~~~~~~~-  343 (517)
                          +.|..++...+.     .+ ..+.   ........++|.|||.++++.+..+.           -+|+.++.++. 
T Consensus       101 ~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~  180 (352)
T 2ism_A          101 GGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEP  180 (352)
T ss_dssp             TSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSB
T ss_pred             CCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCC
Confidence                578888876442     11 1232   11123468999999977666443211           24888887762 


Q ss_pred             ------------eeEeeeCcCCCceEEEEEcc-CCCEEEEEeCCCc--------EEEEECCCc---------------e-
Q 042434          344 ------------EIKAWRGTRIPKVLDLAVTP-DGENLISVLSDKD--------IRILNLGTY---------------A-  386 (517)
Q Consensus       344 ------------~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~--------i~i~d~~~~---------------~-  386 (517)
                                  ....+.... .....++|+| ++..+++-...+.        |.+......               . 
T Consensus       181 p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~  259 (352)
T 2ism_A          181 APGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRD  259 (352)
T ss_dssp             CTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCC
T ss_pred             CCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcC
Confidence                        111121111 2466789999 5665554333332        333322110               0 


Q ss_pred             -EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 042434          387 -ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAG  424 (517)
Q Consensus       387 -~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~  424 (517)
                       ............++| .+|..+++....+.|...++..
T Consensus       260 p~~~~~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~  297 (352)
T 2ism_A          260 PLYFWPQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEG  297 (352)
T ss_dssp             CSEECTTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEE
T ss_pred             CeEecCCCCCCcceEE-ECCEEEEEECCCCEEEEEEECC
Confidence             011112223456666 4566666666677787777754

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.20  E-value=0.0073  Score=60.86  Aligned_cols=203  Identities=13%  Similarity=-0.022  Sum_probs=126.0

Q ss_pred             cccCcEEEEEECCCCCEEEEee-CCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeE-EEEeCCCeEEEEECC
Q 042434          220 EHKNEVWFVQFSNNGEYLASSS-SDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKL-LTCGNAEVLKLWDVE  297 (517)
Q Consensus       220 ~h~~~v~~~~~s~~~~~l~t~~-~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l-~s~~~dg~i~iwd~~  297 (517)
                      ..-..+..++|++.+..|..+. ..+.|..++.......  ...+...-.....+++.+.+..| ++-...+.|.+.++.
T Consensus        37 ~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~--~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~d  114 (619)
T 3s94_A           37 GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV--QNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLD  114 (619)
T ss_dssp             BCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----C--EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             cCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCce--EEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECC
Confidence            3445678999999666565544 4677888887533211  12233333568899999865555 455567899999987


Q ss_pred             CCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEe-CCCc
Q 042434          298 TGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVL-SDKD  376 (517)
Q Consensus       298 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~  376 (517)
                      .......+...-.....+++.|.+..++.+.....-+|+..++++.....+..........+++++++..|+.+. ..+.
T Consensus       115 G~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~  194 (619)
T 3s94_A          115 GSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNF  194 (619)
T ss_dssp             SCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCC
T ss_pred             CCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCe
Confidence            654433333444557789999987666666543233488888888766555544445788999999777666554 4678


Q ss_pred             EEEEECCCceEEeec--cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 042434          377 IRILNLGTYAERVIS--EEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK  425 (517)
Q Consensus       377 i~i~d~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~  425 (517)
                      |..+|+.........  .......+++..+ ..+++-...+.|...|..++
T Consensus       195 I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg  244 (619)
T 3s94_A          195 IHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTG  244 (619)
T ss_dssp             EEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSC
T ss_pred             EEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCC
Confidence            999998765422221  2223356677655 44444455778888887543

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=98.19  E-value=0.0026  Score=59.29  Aligned_cols=202  Identities=11%  Similarity=0.093  Sum_probs=112.5

Q ss_pred             eccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEec---cCCCCEEEEEECCC---CCeEEEEeC----
Q 042434          218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLR---SHQNPVSFVAWSPD---DTKLLTCGN----  287 (517)
Q Consensus       218 l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~---~h~~~v~~l~~s~~---~~~l~s~~~----  287 (517)
                      +...-...+.++|.|+|+++++ ..+|.|++++. ++ . ..+..+.   ........|+|+|+   +..|+++..    
T Consensus        24 va~~l~~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G-~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~   99 (354)
T 3a9g_A           24 VASDLEVPWSIAPLGGGRYLVT-ERPGRLVLISP-SG-K-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAE   99 (354)
T ss_dssp             EECSCSCEEEEEEEETTEEEEE-ETTTEEEEECS-SC-E-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECG
T ss_pred             EeCCCCCCeEEEEcCCCeEEEE-eCCCEEEEEeC-CC-c-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCC
Confidence            3333456789999999985555 56699988863 23 2 3333221   22356899999997   445544332    


Q ss_pred             C----CeEEEEECCCC--c-----EE-EEeCC-CCCceEEEEEeCCCCeEEEeeCCCc-----------eeEEEEeCCCC
Q 042434          288 A----EVLKLWDVETG--I-----CK-HTFGD-HGFIVSSCAWFPDSKRLVCGSSDTE-----------KGIFMCDCDGN  343 (517)
Q Consensus       288 d----g~i~iwd~~~~--~-----~~-~~~~~-~~~~v~~i~~~~~~~~l~~~~~d~~-----------v~i~~~~~~~~  343 (517)
                      +    ..|..|+...+  .     .+ ..+.. .......++|.|||.++++.+..+.           -+|+.++.++.
T Consensus       100 ~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~  179 (354)
T 3a9g_A          100 GGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGR  179 (354)
T ss_dssp             GGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC
T ss_pred             CCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCC
Confidence            3    56777776544  1     11 11221 1123467999999987776543211           13888887764


Q ss_pred             --------eeEeeeCcCCCceEEEEEcc-CCCEEEEEeCCC---cEEEEECCCc---------------e--EEee-ccC
Q 042434          344 --------EIKAWRGTRIPKVLDLAVTP-DGENLISVLSDK---DIRILNLGTY---------------A--ERVI-SEE  393 (517)
Q Consensus       344 --------~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg---~i~i~d~~~~---------------~--~~~~-~~~  393 (517)
                              ....+.... .....++|+| ++..+++-...+   .|.+......               .  .... ...
T Consensus       180 ~p~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~  258 (354)
T 3a9g_A          180 PPADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSET  258 (354)
T ss_dssp             CCTTSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCC
T ss_pred             CCCCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCC
Confidence                    112222222 2466899999 565544432222   2443322110               0  0111 123


Q ss_pred             CCeeEEEEc-------CCCCEEEEEeCCCeEEEEEcCC
Q 042434          394 HPITSLSVS-------VDCKNFIVNLNSQEIHMWDVAG  424 (517)
Q Consensus       394 ~~i~~~~~s-------~~~~~l~~~~~d~~i~~~d~~~  424 (517)
                      .....++|.       .+|.++++....+.|...++..
T Consensus       259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~  296 (354)
T 3a9g_A          259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGD  296 (354)
T ss_dssp             CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECG
T ss_pred             cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECC
Confidence            356777773       4676676666777888888864

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.18  E-value=0.002  Score=66.58  Aligned_cols=204  Identities=12%  Similarity=-0.028  Sum_probs=127.0

Q ss_pred             ccCcEEEEEECCCCC-EEEEeeCCCcEEEEEecCCCe-eeEEEEeccCCCCEEEEEECCCCCeE-EEEeCCCeEEEEECC
Q 042434          221 HKNEVWFVQFSNNGE-YLASSSSDCSAIIWKVLEDSK-LTLKHTLRSHQNPVSFVAWSPDDTKL-LTCGNAEVLKLWDVE  297 (517)
Q Consensus       221 h~~~v~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~~~-~~~~~~~~~h~~~v~~l~~s~~~~~l-~s~~~dg~i~iwd~~  297 (517)
                      ....+..++|++... ++++-...+.|+.+++..... ......+.........|++.+.+..| ++-...+.|.+.++.
T Consensus       422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld  501 (791)
T 3m0c_C          422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  501 (791)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence            345677899988544 444545567788888753211 01112233234556788888776555 455567899999987


Q ss_pred             CCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEe-CCCc
Q 042434          298 TGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVL-SDKD  376 (517)
Q Consensus       298 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~  376 (517)
                      .......+...-.....|++.|.+..|+.+.....-+|+..++.+.....+..........|++++.+..|+.+. ..+.
T Consensus       502 G~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~  581 (791)
T 3m0c_C          502 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS  581 (791)
T ss_dssp             SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             CCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCc
Confidence            555443443444568899999987777766644323499999998777666655555788999998777776664 4568


Q ss_pred             EEEEECCCceE-Eeecc---CCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 042434          377 IRILNLGTYAE-RVISE---EHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK  425 (517)
Q Consensus       377 i~i~d~~~~~~-~~~~~---~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~  425 (517)
                      |..+++..... .+...   ......+++.. +..+++-...+.|...|..++
T Consensus       582 I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG  633 (791)
T 3m0c_C          582 ISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTG  633 (791)
T ss_dssp             EEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred             EEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCC
Confidence            99999876552 22221   22344566532 234444455678888876544

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.17  E-value=0.0013  Score=59.47  Aligned_cols=207  Identities=8%  Similarity=0.036  Sum_probs=126.3

Q ss_pred             eccCCCCEEEEEECCCCCeEEEEe-CCCeEEEEECCCCcEEEE-eCC----C--CCceEEEEE---eCCCCeEEEeeC--
Q 042434          263 LRSHQNPVSFVAWSPDDTKLLTCG-NAEVLKLWDVETGICKHT-FGD----H--GFIVSSCAW---FPDSKRLVCGSS--  329 (517)
Q Consensus       263 ~~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~-~~~----~--~~~v~~i~~---~~~~~~l~~~~~--  329 (517)
                      +......--+++|++....+..++ ..++|..||...+..... +..    .  ...+..+.|   .|+++++++...  
T Consensus         8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~   87 (334)
T 2p9w_A            8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAK   87 (334)
T ss_dssp             ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETT
T ss_pred             ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccc
Confidence            333444456789987555555555 799999999976654433 221    1  124688999   588777775431  


Q ss_pred             ---------CCceeEEEEeCC----CCeeEeeeCc------------CCCceEEEEEccCCCEEEEEeCC-CcEEEEECC
Q 042434          330 ---------DTEKGIFMCDCD----GNEIKAWRGT------------RIPKVLDLAVTPDGENLISVLSD-KDIRILNLG  383 (517)
Q Consensus       330 ---------d~~v~i~~~~~~----~~~~~~~~~~------------~~~~i~~~~~~~~~~~l~~~~~d-g~i~i~d~~  383 (517)
                               +|.-.+..+|+.    ++.+......            .......++..++|+..++++.. +.|..++..
T Consensus        88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd  167 (334)
T 2p9w_A           88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD  167 (334)
T ss_dssp             TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT
T ss_pred             cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC
Confidence                     123348889987    4443322211            22358899999999999999888 888888877


Q ss_pred             CceEE-ee-c-----cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEe--Cc---ccCceEEEeecCCCCC
Q 042434          384 TYAER-VI-S-----EEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYT--GH---SQNKYVIRSCFGGLDG  451 (517)
Q Consensus       384 ~~~~~-~~-~-----~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~--~~---~~~~~~i~~~~~s~~~  451 (517)
                      ..... .. .     .....+.++++|+|+.|++....+.+..+|+...........  +.   ......+  +....+|
T Consensus       168 G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgi--lp~~~~G  245 (334)
T 2p9w_A          168 GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKI--VTVPVGN  245 (334)
T ss_dssp             SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEE--EEEEETT
T ss_pred             CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccc--cccccCC
Confidence            65422 11 1     122367999999999999988899999999874311012121  21   1111112  1112467


Q ss_pred             cE-EEEecCCCcEEEEecCCC
Q 042434          452 TF-IASGSENSQIYIWNRRNS  471 (517)
Q Consensus       452 ~~-l~~~~~dg~i~iwd~~~~  471 (517)
                      +. +++.+..+.+.+.+....
T Consensus       246 ~vllV~~~~~~~~~l~S~DgW  266 (334)
T 2p9w_A          246 ESVLVGARAPYAISFRSWDNW  266 (334)
T ss_dssp             EEEEEEEETTEEEEEECSSTT
T ss_pred             EEEEEEcCCCCEEEEECCCCc
Confidence            76 455555666666655443

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.16  E-value=0.002  Score=60.06  Aligned_cols=225  Identities=12%  Similarity=0.070  Sum_probs=119.1

Q ss_pred             CCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEE--EEeC---CCCCceEEEEEeCC---CCeEEEeeCCC----ceeE
Q 042434          268 NPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICK--HTFG---DHGFIVSSCAWFPD---SKRLVCGSSDT----EKGI  335 (517)
Q Consensus       268 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~---~~~~~v~~i~~~~~---~~~l~~~~~d~----~v~i  335 (517)
                      .....++|.|+|+++++ ..+|.|.+++  +++..  ..+.   ........++++|+   +..|+++....    .-+|
T Consensus        31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            45679999999985554 5679999998  45422  2221   22456789999998   55555544321    1237


Q ss_pred             EEEeCCCCee----Ee---ee--CcCCCceEEEEEccCCCEEEEEeC-------------CCcEEEEECCCc--------
Q 042434          336 FMCDCDGNEI----KA---WR--GTRIPKVLDLAVTPDGENLISVLS-------------DKDIRILNLGTY--------  385 (517)
Q Consensus       336 ~~~~~~~~~~----~~---~~--~~~~~~i~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~--------  385 (517)
                      +.++..+..+    ..   +.  .........++|.|+|...++.+.             .|.|..++....        
T Consensus       108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~  187 (352)
T 2ism_A          108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL  187 (352)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred             EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence            7777664311    11   21  111123468999999976665432             256777766541        


Q ss_pred             -----e-EEeeccCCCeeEEEEcC-CCCEEEEEeCCCe--------EEEEEcCC--CC-------------ccceEEeCc
Q 042434          386 -----A-ERVISEEHPITSLSVSV-DCKNFIVNLNSQE--------IHMWDVAG--KW-------------EKPFKYTGH  435 (517)
Q Consensus       386 -----~-~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~--------i~~~d~~~--~~-------------~~~~~~~~~  435 (517)
                           . ............++|+| ++..+++-...+.        |.+.....  ++             .....+..+
T Consensus       188 ~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~  267 (352)
T 2ism_A          188 GRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQG  267 (352)
T ss_dssp             TCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTC
T ss_pred             CCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecCCC
Confidence                 1 11111223467889999 5665554443333        33332111  00             011111111


Q ss_pred             ccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCce------eEEecCCCCCeeEEEecCCCCcEEEEee
Q 042434          436 SQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKP------IEILSGHSMTVNCVSWNPKRPKMLASAS  501 (517)
Q Consensus       436 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~h~~~v~~v~~~~~~~~~l~s~~  501 (517)
                      ..    ...+.+ .+|.++++.-..+.|...++.....      ...+-.-...+.++++.|+| .++++..
T Consensus       268 ~a----p~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG-~lyv~~~  333 (352)
T 2ism_A          268 FP----PGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDG-ALYVTTS  333 (352)
T ss_dssp             CC----EEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTS-CEEEEEC
T ss_pred             CC----CcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCC-cEEEEEe
Confidence            11    111111 3667666666667787777654321      12221223678999999999 5555543

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.15  E-value=0.009  Score=60.24  Aligned_cols=231  Identities=10%  Similarity=0.014  Sum_probs=144.7

Q ss_pred             EEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEE-EeCCCeEEEEECCCCcEEEEeCCCCCceEE
Q 042434          236 YLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLT-CGNAEVLKLWDVETGICKHTFGDHGFIVSS  314 (517)
Q Consensus       236 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  314 (517)
                      +|+.+ ....|+..++..... .....+ ..-..+..++|++.+..|+. -..++.|..+++........+.........
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~~~-~~~~~~-~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~G   84 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETNNN-NVAIPL-TGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEG   84 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCTTC-EEECCC-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCE
T ss_pred             EEEEE-eCCcEEEEECCCCCc-ceEEEc-CCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcce
Confidence            44444 446788888865432 111111 12346889999997666654 455789999998765544444333345678


Q ss_pred             EEEeCCCCeEEEeeC-CCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeC--CCcEEEEECCCce-EEee
Q 042434          315 CAWFPDSKRLVCGSS-DTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLS--DKDIRILNLGTYA-ERVI  390 (517)
Q Consensus       315 i~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~-~~~~  390 (517)
                      +++.+.+..|+.+.. .+.  |...+.++.....+..........+++.|....|+....  .+.|...++.... ....
T Consensus        85 lAvD~~~~~LY~tD~~~~~--I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~  162 (628)
T 4a0p_A           85 MAVDWLGKNLYWADTGTNR--IEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV  162 (628)
T ss_dssp             EEEETTTTEEEEEETTTTE--EEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE
T ss_pred             EEEEeCCCEEEEEECCCCE--EEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE
Confidence            889877666655544 444  888888876555444344456789999996666666553  5688888887655 3334


Q ss_pred             ccCCCeeEEEEcCCCCEEEEE-eCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecC
Q 042434          391 SEEHPITSLSVSVDCKNFIVN-LNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRR  469 (517)
Q Consensus       391 ~~~~~i~~~~~s~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~  469 (517)
                      ........++++++++.|+.+ ...+.|..+|+.+...  ..+.........+..   . .+..+++-...+.|...|..
T Consensus       163 ~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~--~v~~~~l~~P~glav---~-~~~ly~tD~~~~~I~~~dk~  236 (628)
T 4a0p_A          163 PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR--EVIADDLPHPFGLTQ---Y-QDYIYWTDWSRRSIERANKT  236 (628)
T ss_dssp             CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEEECCSCEEEEEE---E-TTEEEEEETTTTEEEEEETT
T ss_pred             CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce--EEeeccCCCceEEEE---E-CCEEEEecCCCCEEEEEECC
Confidence            455678899999976666555 4577899999976533  222222222222322   2 24555555567889999977


Q ss_pred             CCceeEEe
Q 042434          470 NSKPIEIL  477 (517)
Q Consensus       470 ~~~~~~~~  477 (517)
                      +|+....+
T Consensus       237 tg~~~~~l  244 (628)
T 4a0p_A          237 SGQNRTII  244 (628)
T ss_dssp             TCCSCEEE
T ss_pred             CCCceEEE
Confidence            77644443

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.15  E-value=0.00038  Score=67.17  Aligned_cols=195  Identities=7%  Similarity=0.046  Sum_probs=108.9

Q ss_pred             cEEEEEECC-CCCEEEEe-eCCCcEEEEEecCCCeeeEEEEe-ccCCCCEEEEEE-------CCCCCeEEEEeCCC----
Q 042434          224 EVWFVQFSN-NGEYLASS-SSDCSAIIWKVLEDSKLTLKHTL-RSHQNPVSFVAW-------SPDDTKLLTCGNAE----  289 (517)
Q Consensus       224 ~v~~~~~s~-~~~~l~t~-~~dg~i~iw~~~~~~~~~~~~~~-~~h~~~v~~l~~-------s~~~~~l~s~~~dg----  289 (517)
                      ....++|+| ++..|+.+ ...+.|++.|...+ .+..+... .........++|       ++++..|+++...+    
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~-~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~  218 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNR-MLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD  218 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTT-EEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCC-EEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence            467899998 34444444 43456777777543 22222111 112235899999       99998777665543    


Q ss_pred             ---eEEEEECCC-CcEE-----EEeCCCCCceEEEEEeCCCCe-EEEeeCCCceeEEEEeCC-------CCee-------
Q 042434          290 ---VLKLWDVET-GICK-----HTFGDHGFIVSSCAWFPDSKR-LVCGSSDTEKGIFMCDCD-------GNEI-------  345 (517)
Q Consensus       290 ---~i~iwd~~~-~~~~-----~~~~~~~~~v~~i~~~~~~~~-l~~~~~d~~v~i~~~~~~-------~~~~-------  345 (517)
                         .|.+.+... +...     ..+.. ......++.+|++.. +++-..++.  |+.++..       +...       
T Consensus       219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~--V~r~d~~~~~~~~~tg~~~tp~~~~  295 (496)
T 3kya_A          219 ESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQ--VFRLDLVDYFKTIKNGGSWDPIVKN  295 (496)
T ss_dssp             GEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTE--EEEECHHHHHHHHHTTCCCCCBGGG
T ss_pred             cCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCE--EEEEecccccccccCceeecccccc
Confidence               255665333 2211     12211 123356788995555 445555666  8888875       3322       


Q ss_pred             ------EeeeCcCCCceEEEEEccCCCEEEEE-eCCCcEEEEECC--CceE----Eeecc---C------------CCee
Q 042434          346 ------KAWRGTRIPKVLDLAVTPDGENLISV-LSDKDIRILNLG--TYAE----RVISE---E------------HPIT  397 (517)
Q Consensus       346 ------~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~--~~~~----~~~~~---~------------~~i~  397 (517)
                            .............++|+|+|+.++.+ +..+.|+.++..  ....    .....   .            ....
T Consensus       296 ~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~  375 (496)
T 3kya_A          296 NPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPC  375 (496)
T ss_dssp             CTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEE
T ss_pred             cccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCe
Confidence                  11222223356789999999965554 456788886643  2211    11111   0            1233


Q ss_pred             -EEEEc-------CCCCEEEEEeCCCeEEEEEc
Q 042434          398 -SLSVS-------VDCKNFIVNLNSQEIHMWDV  422 (517)
Q Consensus       398 -~~~~s-------~~~~~l~~~~~d~~i~~~d~  422 (517)
                       .++..       +++..+++-+.+++|+.++.
T Consensus       376 ~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~  408 (496)
T 3kya_A          376 QGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP  408 (496)
T ss_dssp             EEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT
T ss_pred             EEEEEccccccccCCCeEEEEECCCCEEEEEeC
Confidence             45554       45666666677889999984

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.13  E-value=0.0064  Score=65.72  Aligned_cols=282  Identities=16%  Similarity=0.105  Sum_probs=152.9

Q ss_pred             cCcEEEEEECCC------CCEEEEeeC-CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEEC--CCCCeEEEEeCCCeEE
Q 042434          222 KNEVWFVQFSNN------GEYLASSSS-DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWS--PDDTKLLTCGNAEVLK  292 (517)
Q Consensus       222 ~~~v~~~~~s~~------~~~l~t~~~-dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s--~~~~~l~s~~~dg~i~  292 (517)
                      .+.|.|+++.|.      ++++|.|.. |++|+|+++.+-... ....+.. .....++.+.  ....+|..|-.||.+.
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~-~~~~L~~-~~~p~si~l~~~~~~~~L~igl~dG~l~  630 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELL-HKEMLGG-EIIPRSILMTTFESSHYLLCALGDGALF  630 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEE-EEEECCS-SCCEEEEEEEEETTEEEEEEEETTSEEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeE-EEEECCC-CCCCcEEEEEEeCCCcEEEEEeCCCeEE
Confidence            568999999863      479999996 999999999643322 1222321 2234444332  2346788999999876


Q ss_pred             EEEC--CCCcEEEE--eCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEE-EEEccC--C
Q 042434          293 LWDV--ETGICKHT--FGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLD-LAVTPD--G  365 (517)
Q Consensus       293 iwd~--~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~--~  365 (517)
                      -+.+  .+|.....  ..-...++.-..+...+..-+.+..+..  .+.+...+....  ..-....+.. ..|+..  .
T Consensus       631 ~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp--~liy~~~~~l~~--s~l~~~~v~~~~~F~se~~~  706 (1158)
T 3ei3_A          631 YFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRP--TVIYSSNHKLVF--SNVNLKEVNYMCPLNSDGYP  706 (1158)
T ss_dssp             EEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSC--EEEEESSSSEEE--EEBSSSCCCEEEEECCSSST
T ss_pred             EEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCC--EEEEEcCCceEE--eccChHHhceEeccCcccCC
Confidence            5544  45544321  1122345554445444444333344444  334443433221  1111112322 334332  2


Q ss_pred             CEEEEEeCCCcEEEEECCCce---EEeeccCCCeeEEEEcCCCCEEEEEeCC----------------------------
Q 042434          366 ENLISVLSDKDIRILNLGTYA---ERVISEEHPITSLSVSVDCKNFIVNLNS----------------------------  414 (517)
Q Consensus       366 ~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~d----------------------------  414 (517)
                      .-++.. .++.++|..+....   .....-...+..++++|+.+.++++..+                            
T Consensus       707 ~g~v~~-~~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  785 (1158)
T 3ei3_A          707 DSLALA-NNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSS  785 (1158)
T ss_dssp             TEEEEE-CSSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECC
T ss_pred             CcEEEE-cCCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccc
Confidence            344443 34568888775433   4555566788899999988776655421                            


Q ss_pred             ---------------------CeEEEEEcCCCCccceEEeCc-ccCceEEEeecCCCC-CcEEEEec----------CCC
Q 042434          415 ---------------------QEIHMWDVAGKWEKPFKYTGH-SQNKYVIRSCFGGLD-GTFIASGS----------ENS  461 (517)
Q Consensus       415 ---------------------~~i~~~d~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~-~~~l~~~~----------~dg  461 (517)
                                           +.|+++|..+. .....+.-. ......+..+.+..+ ..++++|+          ..|
T Consensus       786 ~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~-~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~G  864 (1158)
T 3ei3_A          786 SKLFSSSTAPHETSFGEEVEVHNLLIIDQHTF-EVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQG  864 (1158)
T ss_dssp             CCCC----------CCCEEEEEEEEEEETTTC-CEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCE
T ss_pred             cccccccccCchhhcCCceeeEEEEEEeCCCC-eEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCce
Confidence                                 12445554332 222222211 112233444444332 46888876          358


Q ss_pred             cEEEEecCCCceeEEec-CCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434          462 QIYIWNRRNSKPIEILS-GHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS  515 (517)
Q Consensus       462 ~i~iwd~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~  515 (517)
                      .|++|++..+++..... ...++|++++--. | +++++.  ..+|++|++...+
T Consensus       865 ri~vf~v~~~kL~lv~~~~v~g~v~al~~~~-g-~Lla~i--g~~l~vy~l~~~~  915 (1158)
T 3ei3_A          865 RIVVFQYSDGKLQTVAEKEVKGAVYSMVEFN-G-KLLASI--NSTVRLYEWTTEK  915 (1158)
T ss_dssp             EEEEEEEETTEEEEEEEEEESSCEEEEEEET-T-EEEEEE--TTEEEEEEECTTS
T ss_pred             EEEEEEEECCEEEEEEEEEcCCcCEEEeeeC-C-EEEEEc--CCEEEEEECCCCc
Confidence            89999987554322221 2368899987553 4 455544  4689999987654

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.13  E-value=0.0011  Score=60.51  Aligned_cols=197  Identities=14%  Similarity=0.222  Sum_probs=123.6

Q ss_pred             CCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCC----CCe--EEEeeC----CCceeEEEEeCCCCeeEe
Q 042434          278 DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPD----SKR--LVCGSS----DTEKGIFMCDCDGNEIKA  347 (517)
Q Consensus       278 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~----~~~--l~~~~~----d~~v~i~~~~~~~~~~~~  347 (517)
                      ...+++.....+-+.+||+ +|+.+..+..  +.+..+..-|+    |+.  ++.++.    ++++.++..|.....+..
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~  115 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence            3456776777889999999 8998888753  45666666653    222  333333    356555555656666655


Q ss_pred             eeC------cCCCceEEEEE--ccC-CC-EEEEEeCCCcEEEEECCC---c----e-EEeeccCCCeeEEEEcCCCCEEE
Q 042434          348 WRG------TRIPKVLDLAV--TPD-GE-NLISVLSDKDIRILNLGT---Y----A-ERVISEEHPITSLSVSVDCKNFI  409 (517)
Q Consensus       348 ~~~------~~~~~i~~~~~--~~~-~~-~l~~~~~dg~i~i~d~~~---~----~-~~~~~~~~~i~~~~~s~~~~~l~  409 (517)
                      ...      .....+..+|+  +|. +. ++++...+|.+..|++..   +    + ...+.....+..+...+....|+
T Consensus       116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Ly  195 (355)
T 3amr_A          116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLY  195 (355)
T ss_dssp             CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEE
T ss_pred             ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEE
Confidence            522      11135666777  774 44 688888899999998832   2    1 34455667889999999999999


Q ss_pred             EEeCCCeEEEEEcCCCC----ccceEEe-Ccc-cCceEEEeecCCCCCc-EEEEec-CCCcEEEEecC-CCceeEEec
Q 042434          410 VNLNSQEIHMWDVAGKW----EKPFKYT-GHS-QNKYVIRSCFGGLDGT-FIASGS-ENSQIYIWNRR-NSKPIEILS  478 (517)
Q Consensus       410 ~~~~d~~i~~~d~~~~~----~~~~~~~-~~~-~~~~~i~~~~~s~~~~-~l~~~~-~dg~i~iwd~~-~~~~~~~~~  478 (517)
                      ++-.+..|..|+.....    ..+..+. ++- .....+.... .++++ ||++++ .+.+..+||.. +.+.+..+.
T Consensus       196 v~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~-~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~  272 (355)
T 3amr_A          196 IAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYY-AADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR  272 (355)
T ss_dssp             EEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEE-CGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             EecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEe-cCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence            99999888777754221    2222221 111 1223333221 34544 555555 56799999996 677777774

>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A

Probab=98.12  E-value=2.1e-06  Score=59.74  Aligned_cols=36  Identities=28%  Similarity=0.228  Sum_probs=33.2

Q ss_pred             CCchHHHHHHHHHHHhhcChHHHHHHHhhhcCeeec
Q 042434           13 LIKKYEFVRVVVQCLYSLGYQKSASCLESESGVSYK   48 (517)
Q Consensus        13 ~~~~~~~~~li~q~L~~~g~~~s~~~l~~Esg~~~~   48 (517)
                      .++.+||+.||++||+|.||.+||.+|++||++.-.
T Consensus         2 sitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~~   37 (90)
T 2xtc_A            2 SITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQS   37 (90)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGGS
T ss_pred             CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCcc
Confidence            578999999999999999999999999999998643

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=98.08  E-value=0.0069  Score=56.41  Aligned_cols=231  Identities=13%  Similarity=0.039  Sum_probs=124.0

Q ss_pred             CCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc-EEEEeC---CCCCceEEEEEeCC---CCeEEEeeCC--Cc----e
Q 042434          267 QNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI-CKHTFG---DHGFIVSSCAWFPD---SKRLVCGSSD--TE----K  333 (517)
Q Consensus       267 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~---~~~~~v~~i~~~~~---~~~l~~~~~d--~~----v  333 (517)
                      -.....++|.|+|++++ +..+|.|.+++ .+++ .+..+.   ........++++|+   +..|+++...  +.    -
T Consensus        28 l~~P~~ia~~pdG~l~V-~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~  105 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLV-TERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN  105 (354)
T ss_dssp             CSCEEEEEEEETTEEEE-EETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred             CCCCeEEEEcCCCeEEE-EeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence            34578999999997555 46669999997 4554 222221   22356789999997   5555544331  11    3


Q ss_pred             eEEEEeCCCC--e---eE----eeeCcCCCceEEEEEccCCCEEEEEeC-------------CCcEEEEECCCc------
Q 042434          334 GIFMCDCDGN--E---IK----AWRGTRIPKVLDLAVTPDGENLISVLS-------------DKDIRILNLGTY------  385 (517)
Q Consensus       334 ~i~~~~~~~~--~---~~----~~~~~~~~~i~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~------  385 (517)
                      +|..++..+.  .   ..    .+..........+.|.|||.+.++.+.             .|.|..++....      
T Consensus       106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np  185 (354)
T 3a9g_A          106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP  185 (354)
T ss_dssp             EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred             EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence            3777776543  1   11    122111123567999999987666432             246666666542      


Q ss_pred             --e-EEeeccCCCeeEEEEcC-CCCEEEEEeCCC---eEEEEEcCC--CC-------------ccceEE-eCcccCceEE
Q 042434          386 --A-ERVISEEHPITSLSVSV-DCKNFIVNLNSQ---EIHMWDVAG--KW-------------EKPFKY-TGHSQNKYVI  442 (517)
Q Consensus       386 --~-~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~---~i~~~d~~~--~~-------------~~~~~~-~~~~~~~~~i  442 (517)
                        . ............++|+| ++..+++-...+   .|.+...-.  ++             .....+ ..+. ....+
T Consensus       186 f~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~-ap~G~  264 (354)
T 3a9g_A          186 FPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETW-APSGA  264 (354)
T ss_dssp             STTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCC-CEEEE
T ss_pred             CCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCc-CCcce
Confidence              1 11112223467899999 565555443322   243332111  00             011111 1111 11111


Q ss_pred             Eee---cC-CCCCcEEEEecCCCcEEEEecCCC-cee--EEe-cCCCCCeeEEEecCCCCcEEEEee
Q 042434          443 RSC---FG-GLDGTFIASGSENSQIYIWNRRNS-KPI--EIL-SGHSMTVNCVSWNPKRPKMLASAS  501 (517)
Q Consensus       443 ~~~---~~-s~~~~~l~~~~~dg~i~iwd~~~~-~~~--~~~-~~h~~~v~~v~~~~~~~~~l~s~~  501 (517)
                      ...   .| ..+|.++++.-..+.|...++... +..  ..+ .+....+.++++.|+| .++++..
T Consensus       265 ~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG-~lyv~~~  330 (354)
T 3a9g_A          265 SFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDG-GILISTS  330 (354)
T ss_dssp             EECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTS-CEEEEEC
T ss_pred             EEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCC-cEEEEEe
Confidence            110   00 246777777777788888888753 322  222 2334678999999999 5666654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.06  E-value=3.6e-05  Score=78.96  Aligned_cols=235  Identities=9%  Similarity=-0.016  Sum_probs=134.0

Q ss_pred             CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEe-CCCeEEEEECCC----CcEEEEeCCCCCceEEEEE
Q 042434          243 DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCG-NAEVLKLWDVET----GICKHTFGDHGFIVSSCAW  317 (517)
Q Consensus       243 dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~iwd~~~----~~~~~~~~~~~~~v~~i~~  317 (517)
                      .+.|+..++.....   .. +......+..++|++.+..|+.+. ..+.|..+++.+    ......+.........+++
T Consensus       385 ~~~I~~id~~~~~~---~~-~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glav  460 (699)
T 1n7d_A          385 RHEVRKMTLDRSEY---TS-LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV  460 (699)
T ss_dssp             TTC-CEECTTSCCE---EC-CSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEEC
T ss_pred             ccceEEEeCCCCcc---ee-eeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEE
Confidence            35677777654321   11 222234567889998776666554 457899999875    2222222122223456788


Q ss_pred             eCCCCeEEEe-eCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeC--CCcEEEEECCCceEE-e-ecc
Q 042434          318 FPDSKRLVCG-SSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLS--DKDIRILNLGTYAER-V-ISE  392 (517)
Q Consensus       318 ~~~~~~l~~~-~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~-~-~~~  392 (517)
                      .+.+..|+.+ ...+.  |++++..+.....+..........+++.|.+..|+.+..  .+.|.++++...... . ...
T Consensus       461 D~~~g~LY~tD~~~~~--I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~  538 (699)
T 1n7d_A          461 DWIHSNIYWTDSVLGT--VSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN  538 (699)
T ss_dssp             CCSSSBCEECCTTTSC--EEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSS
T ss_pred             EeeCCcEEEEeccCCe--EEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCC
Confidence            7554444443 44555  888888877665554433345678899997665555443  268888887654422 2 223


Q ss_pred             CCCeeEEEEcCCCCEEE-EEeCCCeEEEEEcCCCCccceEEeCc---ccCceEEEeecCCCCCcEEEEecCCCcEEEEec
Q 042434          393 EHPITSLSVSVDCKNFI-VNLNSQEIHMWDVAGKWEKPFKYTGH---SQNKYVIRSCFGGLDGTFIASGSENSQIYIWNR  468 (517)
Q Consensus       393 ~~~i~~~~~s~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~---~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~  468 (517)
                      ......++++|++..|+ +-+..+.|..+++.+...  ..+...   ......+..   .. +.++++....+.|..++.
T Consensus       539 l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~--~~~~~~~~~~~~P~glav---d~-~~lywtd~~~~~V~~~d~  612 (699)
T 1n7d_A          539 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR--KTILEDEKRLAHPFSLAV---FE-DKVFWTDIINEAIFSANR  612 (699)
T ss_dssp             CSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC--EEECCCSSSCSSCCCCEE---ET-TEEEEECSTTTCEEEEET
T ss_pred             CCCccEEEEeccCCEEEEEecCCCeEEEEccCCCce--EEEEecCCcCCCceEeEE---EC-CEEEEEeCCCCeEEEEEc
Confidence            34577899999765554 445677899999865322  222111   111111111   12 345556666789999998


Q ss_pred             CCCceeEEecCCCCCeeEEEe
Q 042434          469 RNSKPIEILSGHSMTVNCVSW  489 (517)
Q Consensus       469 ~~~~~~~~~~~h~~~v~~v~~  489 (517)
                      .+|+.+..+........+|++
T Consensus       613 ~~G~~~~~i~~~~~~P~~i~v  633 (699)
T 1n7d_A          613 LTGSDVNLLAENLLSPEDMVL  633 (699)
T ss_dssp             TTEEEEECCCTTCSSCCCCCB
T ss_pred             cCCCceEEeecCCCCCcEEEE
Confidence            888877776543333444443

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.04  E-value=0.015  Score=58.55  Aligned_cols=284  Identities=8%  Similarity=-0.034  Sum_probs=151.5

Q ss_pred             CcEEEEEECCCCC-EEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeC--CCeEEEEECCCC
Q 042434          223 NEVWFVQFSNNGE-YLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGN--AEVLKLWDVETG  299 (517)
Q Consensus       223 ~~v~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~--dg~i~iwd~~~~  299 (517)
                      .....+++.+.+. +.++-...+.|.+.+...... ..  .....-.....|++.|.+..|+.+..  .+.|...++...
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~-~~--l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~  160 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR-KV--LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS  160 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EE--EECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE-EE--EEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCC
Confidence            5788999998554 555555678899998864322 11  12233455678999997666655543  456777776544


Q ss_pred             cEEEEeCCCCCceEEEEEeCCCCeEEEeeCC-CceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEE
Q 042434          300 ICKHTFGDHGFIVSSCAWFPDSKRLVCGSSD-TEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIR  378 (517)
Q Consensus       300 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  378 (517)
                      .........-.....+++.+++..|+.+... +.  |+.++..+.....+..........+++..+ ..+++-...+.|.
T Consensus       161 ~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~--I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~  237 (619)
T 3s94_A          161 SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNF--IHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSIL  237 (619)
T ss_dssp             SCEEEECSSCSSEEEEEEETTTTEEEEEETTTCC--EEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEE
T ss_pred             ceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCe--EEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEE
Confidence            3333333344567899999987777666543 44  888898876554443322223456677655 3444444567888


Q ss_pred             EEECCCce-E-EeeccCCCee-------------------------EEEE-----------cC-------CC-------C
Q 042434          379 ILNLGTYA-E-RVISEEHPIT-------------------------SLSV-----------SV-------DC-------K  406 (517)
Q Consensus       379 i~d~~~~~-~-~~~~~~~~i~-------------------------~~~~-----------s~-------~~-------~  406 (517)
                      ..|..+++ . ..........                         .+++           .|       ++       .
T Consensus       238 ~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~  317 (619)
T 3s94_A          238 ACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGAT  317 (619)
T ss_dssp             EEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCS
T ss_pred             EEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCc
Confidence            88876553 1 1110000001                         1111           11       11       1


Q ss_pred             EEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCC-CCcEEEEecCCCcEEEEecCCCceeEEecCCCCCee
Q 042434          407 NFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGL-DGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVN  485 (517)
Q Consensus       407 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~  485 (517)
                      .++.-+..+.|+..++.........+.. ..-.. ...+.+.+ ++.++++-...+.|+.++.........+...-....
T Consensus       318 ~~Ll~~~~~~i~~i~l~~~~~~~~~~~~-~~l~~-~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~  395 (619)
T 3s94_A          318 ELLLLARRTDLRRISLDTPDFTDIVLQL-EDIRH-AIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPD  395 (619)
T ss_dssp             EEEEEEESSCEEEEESSSTTCCCEECCC-SCCSS-EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCC
T ss_pred             eEEEEEcccceEEEecCCCccceeEEec-cccCc-cEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcC
Confidence            1222223344555555433111111110 01011 12233344 455555555677888888765443333333335677


Q ss_pred             EEEecCCCCcEEEEeeCCCcEEEeCCCCC
Q 042434          486 CVSWNPKRPKMLASASDDHTIRIWGPCQS  514 (517)
Q Consensus       486 ~v~~~~~~~~~l~s~~~dg~v~iw~~~~~  514 (517)
                      ++++.+.+.+++++-+..+.|.+.++...
T Consensus       396 GlAvD~~~~~lY~tD~~~~~I~v~~~~G~  424 (619)
T 3s94_A          396 GIAVDWVARNLYWTDTGTDRIEVTRLNGT  424 (619)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             ceEEecccCcEEEEeCCCCcEEEEeCCCC
Confidence            89998755467777667778888876643

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.01  E-value=0.00097  Score=60.74  Aligned_cols=226  Identities=14%  Similarity=0.116  Sum_probs=116.4

Q ss_pred             CCCeEEEEe-CC-----CeEEEEECCCCcEEEEeC--CCCCceEEEEEeCCCCeEEEeeCCCc---eeEEEEeCCCCe--
Q 042434          278 DDTKLLTCG-NA-----EVLKLWDVETGICKHTFG--DHGFIVSSCAWFPDSKRLVCGSSDTE---KGIFMCDCDGNE--  344 (517)
Q Consensus       278 ~~~~l~s~~-~d-----g~i~iwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~d~~---v~i~~~~~~~~~--  344 (517)
                      ++..++.|+ .+     ..+.+||+.+++-...-.  ........+  ..++..++.|+.++.   -.++.+|.....  
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~   91 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASV--SLHDRIYVIGGYDGRSRLSSVECLDYTADEDG   91 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEE--EETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEE--EECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence            445666666 33     368899988776433211  111112222  235777788876532   238899987655  


Q ss_pred             -eEeeeCcCCCceEEEEEccCCCEEEEEeCC-----CcEEEEECCCce-EEee--ccCCCeeEEEEcCCCCEEEEEeCC-
Q 042434          345 -IKAWRGTRIPKVLDLAVTPDGENLISVLSD-----KDIRILNLGTYA-ERVI--SEEHPITSLSVSVDCKNFIVNLNS-  414 (517)
Q Consensus       345 -~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~-~~~~--~~~~~i~~~~~s~~~~~l~~~~~d-  414 (517)
                       -..............+...+++.++.|+.+     ..+.+||+.+.+ ....  .....-.+++ ..+++.++.|+.+ 
T Consensus        92 ~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~  170 (301)
T 2vpj_A           92 VWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLV-VASGVIYCLGGYDG  170 (301)
T ss_dssp             CCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEE-EETTEEEEECCBCS
T ss_pred             eeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEE-EECCEEEEECCCCC
Confidence             333322221111111222366677777654     368899998876 2211  1111112222 2266677777654 


Q ss_pred             ----CeEEEEEcCCC-CccceEEeCcccCceEEEeecCCCCCcEEEEecCC-----CcEEEEecCCCceeEE--ecCCCC
Q 042434          415 ----QEIHMWDVAGK-WEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSEN-----SQIYIWNRRNSKPIEI--LSGHSM  482 (517)
Q Consensus       415 ----~~i~~~d~~~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~--~~~h~~  482 (517)
                          ..+..||+.+. +......   ........++  ..++++++.|+.+     ..+.+||..+.+-...  +.....
T Consensus       171 ~~~~~~~~~~d~~~~~W~~~~~~---p~~r~~~~~~--~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~  245 (301)
T 2vpj_A          171 LNILNSVEKYDPHTGHWTNVTPM---ATKRSGAGVA--LLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRC  245 (301)
T ss_dssp             SCBCCCEEEEETTTTEEEEECCC---SSCCBSCEEE--EETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCB
T ss_pred             CcccceEEEEeCCCCcEEeCCCC---CcccccceEE--EECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCccc
Confidence                46888998654 2211111   1111111111  1267788888764     4689999987754332  221112


Q ss_pred             CeeEEEecCCCCcEEEEeeCC-----CcEEEeCCCCC
Q 042434          483 TVNCVSWNPKRPKMLASASDD-----HTIRIWGPCQS  514 (517)
Q Consensus       483 ~v~~v~~~~~~~~~l~s~~~d-----g~v~iw~~~~~  514 (517)
                      ....+.+  ++ .+++.||.+     ..|.+||+.+.
T Consensus       246 ~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          246 YVGATVL--RG-RLYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             SCEEEEE--TT-EEEEECCBCSSSBEEEEEEEETTTT
T ss_pred             ceeEEEE--CC-EEEEEcCcCCCcccccEEEEcCCCC
Confidence            2222222  45 678888765     35778887654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.96  E-value=0.0022  Score=58.40  Aligned_cols=225  Identities=9%  Similarity=0.086  Sum_probs=115.7

Q ss_pred             CCeEEEEeCC----CeEEEEECCCCcEEEEe--CCCCCceEEEEEeCCCCeEEEeeCCCc---eeEEEEeCCCCeeEeee
Q 042434          279 DTKLLTCGNA----EVLKLWDVETGICKHTF--GDHGFIVSSCAWFPDSKRLVCGSSDTE---KGIFMCDCDGNEIKAWR  349 (517)
Q Consensus       279 ~~~l~s~~~d----g~i~iwd~~~~~~~~~~--~~~~~~v~~i~~~~~~~~l~~~~~d~~---v~i~~~~~~~~~~~~~~  349 (517)
                      +..++.|+.+    ..+..||+.+.+-...-  ......-..+.  -++..++.|+.++.   -.++.+|.....-....
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~   93 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVY--MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA   93 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEE--ECCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence            3455556543    35888998877643321  11111112222  26777888876532   23888998876654443


Q ss_pred             CcCCCceEEEEEccCCCEEEEEeCCC-----cEEEEECCCce-EEeec--cCCCeeEEEEcCCCCEEEEEeC-------C
Q 042434          350 GTRIPKVLDLAVTPDGENLISVLSDK-----DIRILNLGTYA-ERVIS--EEHPITSLSVSVDCKNFIVNLN-------S  414 (517)
Q Consensus       350 ~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~-~~~~~--~~~~i~~~~~s~~~~~l~~~~~-------d  414 (517)
                      ..........+...++..++.|+.++     .+.+||+.+.. .....  ....-.+++. .+++.++.|+.       .
T Consensus        94 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~  172 (302)
T 2xn4_A           94 NMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCL  172 (302)
T ss_dssp             CCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEEC
T ss_pred             CCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCccc
Confidence            32222111112223667777777553     57889988876 22211  1111112222 25566666654       2


Q ss_pred             CeEEEEEcCCC-CccceEEeCcccCceEEEeecCCCCCcEEEEecCC-----CcEEEEecCCCceeEE--ecCCCCCeeE
Q 042434          415 QEIHMWDVAGK-WEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSEN-----SQIYIWNRRNSKPIEI--LSGHSMTVNC  486 (517)
Q Consensus       415 ~~i~~~d~~~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~--~~~h~~~v~~  486 (517)
                      ..+..||+.+. +.......   .......++  ..++.+++.|+.+     ..+.+||..+.+-...  +.........
T Consensus       173 ~~~~~yd~~~~~W~~~~~~p---~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~  247 (302)
T 2xn4_A          173 STVECYNATTNEWTYIAEMS---TRRSGAGVG--VLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGV  247 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCS---SCCBSCEEE--EETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred             cEEEEEeCCCCcEEECCCCc---cccccccEE--EECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeE
Confidence            45888998654 22221111   111111111  1267788888765     3689999987653322  2211111122


Q ss_pred             EEecCCCCcEEEEeeCCC-----cEEEeCCCCC
Q 042434          487 VSWNPKRPKMLASASDDH-----TIRIWGPCQS  514 (517)
Q Consensus       487 v~~~~~~~~~l~s~~~dg-----~v~iw~~~~~  514 (517)
                      +.+  ++ .+++.||.++     .+.+||+.+.
T Consensus       248 ~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~~  277 (302)
T 2xn4_A          248 CAV--NG-LLYVVGGDDGSCNLASVEYYNPTTD  277 (302)
T ss_dssp             EEE--TT-EEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             EEE--CC-EEEEECCcCCCcccccEEEEcCCCC
Confidence            222  45 6888887654     4788888754

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.94  E-value=0.0012  Score=60.17  Aligned_cols=230  Identities=10%  Similarity=0.046  Sum_probs=118.0

Q ss_pred             CCCEEEEee-CC-----CcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCC-----CeEEEEECCCCc-
Q 042434          233 NGEYLASSS-SD-----CSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNA-----EVLKLWDVETGI-  300 (517)
Q Consensus       233 ~~~~l~t~~-~d-----g~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-----g~i~iwd~~~~~-  300 (517)
                      ++.+++.|+ .+     ..+.+||..+. .+.....+.........+.  .++..++.|+.+     ..+.+||..+++ 
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~   90 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQ-EWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADED   90 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTT-EEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTT
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCC-eEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCC
Confidence            445666666 32     35778887643 2322222221111222222  256777777765     368999998876 


Q ss_pred             --EEEEe--CCCCCceEEEEEeCCCCeEEEeeCCCc---eeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeC
Q 042434          301 --CKHTF--GDHGFIVSSCAWFPDSKRLVCGSSDTE---KGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLS  373 (517)
Q Consensus       301 --~~~~~--~~~~~~v~~i~~~~~~~~l~~~~~d~~---v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  373 (517)
                        -...-  ........++.+  ++..++.|+.++.   -.++.+|..+..-..............+...+++.++.|+.
T Consensus        91 ~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~  168 (301)
T 2vpj_A           91 GVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGY  168 (301)
T ss_dssp             CCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCB
T ss_pred             CeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCC
Confidence              33322  111222222222  6777888876542   24888998876544433222111111222236677777765


Q ss_pred             C-----CcEEEEECCCce-EEeeccCC-CeeEEEEcCCCCEEEEEeCC-----CeEEEEEcCCC-CccceEEeCcccCce
Q 042434          374 D-----KDIRILNLGTYA-ERVISEEH-PITSLSVSVDCKNFIVNLNS-----QEIHMWDVAGK-WEKPFKYTGHSQNKY  440 (517)
Q Consensus       374 d-----g~i~i~d~~~~~-~~~~~~~~-~i~~~~~s~~~~~l~~~~~d-----~~i~~~d~~~~-~~~~~~~~~~~~~~~  440 (517)
                      +     ..+.+||+.+.. ........ .....+...+++.++.|+.+     ..+.+||+.+. +......   .....
T Consensus       169 ~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~---p~~r~  245 (301)
T 2vpj_A          169 DGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSM---TTPRC  245 (301)
T ss_dssp             CSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCC---SSCCB
T ss_pred             CCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCC---CCccc
Confidence            4     468999998877 22211111 11111222256667777654     46889998654 2222111   11111


Q ss_pred             EEEeecCCCCCcEEEEecCC-----CcEEEEecCCCc
Q 042434          441 VIRSCFGGLDGTFIASGSEN-----SQIYIWNRRNSK  472 (517)
Q Consensus       441 ~i~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~  472 (517)
                      ...++  ..++++++.|+.+     ..+.+||..+.+
T Consensus       246 ~~~~~--~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          246 YVGAT--VLRGRLYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             SCEEE--EETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             ceeEE--EECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence            11111  1267777888765     357888887664

>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1

Probab=97.91  E-value=4.6e-06  Score=57.51  Aligned_cols=56  Identities=20%  Similarity=0.299  Sum_probs=46.6

Q ss_pred             hHHHHHHHHHHHhhcChHHHHHHHhhhcCeeecChhHHHHHHHHHcCChHHHHHHhh
Q 042434           16 KYEFVRVVVQCLYSLGYQKSASCLESESGVSYKSKGFERLEVQILNGDWDGCIDTLI   72 (517)
Q Consensus        16 ~~~~~~li~q~L~~~g~~~s~~~l~~Esg~~~~~~~~~~~~~~i~~g~w~~~~~~l~   72 (517)
                      ++|+.+-|++||..+||.+++.+|.+|.+++.+++... -...+++.+|..|+.+-+
T Consensus        10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~-ky~gLLEKKWTSViRLQK   65 (88)
T 1uuj_A           10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDK-KYAGLLEKKWTSVIRLQK   65 (88)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHH-HHTTHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhh-hhhhhhhhhHHHHHHHHH
Confidence            67999999999999999999999999999987744333 456678899998876643

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=97.85  E-value=0.0097  Score=53.86  Aligned_cols=213  Identities=10%  Similarity=0.014  Sum_probs=123.7

Q ss_pred             EEECCCCCeEEEEeCC--------------CeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEee--CCCceeEE
Q 042434          273 VAWSPDDTKLLTCGNA--------------EVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGS--SDTEKGIF  336 (517)
Q Consensus       273 l~~s~~~~~l~s~~~d--------------g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~--~d~~v~i~  336 (517)
                      --+++++.+|+-+...              ..|+..++..++....... .    +..|+++++.|+...  .++.-.|+
T Consensus        58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~-~----~~~~s~~g~~Iy~~~~~~~~~~~Iy  132 (302)
T 3s25_A           58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPD-P----CIYASLIGNYIYYLHYDTQTATSLY  132 (302)
T ss_dssp             EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECS-C----EEEEEEETTEEEEEEESSSSCEEEE
T ss_pred             eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecC-C----ccEEEEeCCEEEEEeecCCCCceEE
Confidence            3457888888876543              3677778776654333221 1    236788899988876  45556699


Q ss_pred             EEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeC-CCcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCC-
Q 042434          337 MCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLS-DKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNS-  414 (517)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-  414 (517)
                      ..+.++.....+.....     ..++++++.|+-.+. ...|.+.++.......... .... ..+.|++++|+-.... 
T Consensus       133 ~~~~dGs~~~~lt~~~~-----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~-~~~~-~~~~P~g~~iy~t~~~~  205 (302)
T 3s25_A          133 RIRIDGEEKKKIKNHYL-----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD-CNCY-KPVVLDDTNVYYMDVNR  205 (302)
T ss_dssp             EEETTSCCCEEEESSCC-----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC-SCEE-EEEEEETTEEEEEEGGG
T ss_pred             EEECCCCCeEEEeCCCc-----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC-CCcc-ceeeecCCEEEEEEcCC
Confidence            99998766665554432     346778888876655 6789999988766333322 2332 3466999988876543 


Q ss_pred             -CeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEec--CCCcEEEEecCCCceeEEecCCCCCeeEEEecC
Q 042434          415 -QEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGS--ENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNP  491 (517)
Q Consensus       415 -~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~  491 (517)
                       ..|..-++.+..  ...+....     +.  +++|++.+|+-++  ..+.|..-++.... ...+..  +.+..+..  
T Consensus       206 ~~~I~~~~ldG~~--~~~Lt~~~-----~~--~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~-r~~l~~--~~~~~i~i--  271 (302)
T 3s25_A          206 DNAIVHVNINNPN--PVVLTEAN-----IE--HYNVYGSLIFYQRGGDNPALCVVKNDGTG-FKELAK--GEFCNINV--  271 (302)
T ss_dssp             TTEEEEECSSSCC--CEECSCSC-----EE--EEEEETTEEEEEECSSSCEEEEEETTSCC-CEEEEE--SCEEEEEE--
T ss_pred             CcEEEEEECCCCC--eEEEeCCC-----cc--eEEECCCEEEEEECCCCcEEEEEECCCCc-cEEeeC--CccceEEE--
Confidence             367677776542  22222111     11  2467888877653  34567777765333 333321  12444444  


Q ss_pred             CCCcEEEEeeCCCcEEEeCC
Q 042434          492 KRPKMLASASDDHTIRIWGP  511 (517)
Q Consensus       492 ~~~~~l~s~~~dg~v~iw~~  511 (517)
                      .+..+..+--..+.|..-++
T Consensus       272 ~~d~Iy~td~~~~~i~~~~~  291 (302)
T 3s25_A          272 TSQYVYFTDFVSNKEYCTST  291 (302)
T ss_dssp             CSSEEEEEETTTCCEEEEES
T ss_pred             eCCEEEEEECCCCeEEEEEC
Confidence            44344444434455544443

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.85  E-value=0.0026  Score=58.07  Aligned_cols=224  Identities=11%  Similarity=0.055  Sum_probs=116.8

Q ss_pred             CeEEEEeC--CCeEEEEECCCCcEEEEeC--CCCCceEEEEEeCCCCeEEEeeCCC--ceeEEEEeCCCCeeEeeeCcCC
Q 042434          280 TKLLTCGN--AEVLKLWDVETGICKHTFG--DHGFIVSSCAWFPDSKRLVCGSSDT--EKGIFMCDCDGNEIKAWRGTRI  353 (517)
Q Consensus       280 ~~l~s~~~--dg~i~iwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~d~--~v~i~~~~~~~~~~~~~~~~~~  353 (517)
                      ..++.|+.  ...+.+||..+++-...-.  ........+.  -++..++.|+.+.  .-.++.+|.....-........
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~   90 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT   90 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence            34555654  3578899998876443211  1112222222  3667778887551  2238889988765544433222


Q ss_pred             CceEEEEEccCCCEEEEEeCC------CcEEEEECCCce-EEeec--cCCCeeEEEEcCCCCEEEEEeC---------CC
Q 042434          354 PKVLDLAVTPDGENLISVLSD------KDIRILNLGTYA-ERVIS--EEHPITSLSVSVDCKNFIVNLN---------SQ  415 (517)
Q Consensus       354 ~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~-~~~~~--~~~~i~~~~~s~~~~~l~~~~~---------d~  415 (517)
                      ......+..-+++.++.|+.+      ..+.+||..+.. .....  ....-.+++. .+++.++.|+.         ..
T Consensus        91 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~  169 (306)
T 3ii7_A           91 PRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVLN  169 (306)
T ss_dssp             CCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEECC
T ss_pred             cccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCcccccc
Confidence            222222222366777777765      468999998876 22211  1111112222 35666666653         34


Q ss_pred             eEEEEEcCCC-CccceEEeCcccCceEEEeecCCCCCcEEEEecCC-----CcEEEEecCCCcee--EEecCCCCCeeEE
Q 042434          416 EIHMWDVAGK-WEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSEN-----SQIYIWNRRNSKPI--EILSGHSMTVNCV  487 (517)
Q Consensus       416 ~i~~~d~~~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~--~~~~~h~~~v~~v  487 (517)
                      .+..||+.+. +......   ......-.++  ..++++++.|+.+     ..+.+||..+.+-.  ..+.........+
T Consensus       170 ~~~~yd~~~~~W~~~~~~---p~~r~~~~~~--~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~  244 (306)
T 3ii7_A          170 SCEVYDPATETWTELCPM---IEARKNHGLV--FVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCA  244 (306)
T ss_dssp             CEEEEETTTTEEEEECCC---SSCCBSCEEE--EETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEE
T ss_pred             eEEEeCCCCCeEEECCCc---cchhhcceEE--EECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEE
Confidence            5888998654 1211111   1111111111  1267777777754     36899998876532  2222222222333


Q ss_pred             EecCCCCcEEEEeeCC-----CcEEEeCCCCC
Q 042434          488 SWNPKRPKMLASASDD-----HTIRIWGPCQS  514 (517)
Q Consensus       488 ~~~~~~~~~l~s~~~d-----g~v~iw~~~~~  514 (517)
                      .+  ++ .+++.||.+     ..+.+||+.+.
T Consensus       245 ~~--~~-~i~v~GG~~~~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          245 AV--GS-IVYVLAGFQGVGRLGHILEYNTETD  273 (306)
T ss_dssp             EE--TT-EEEEEECBCSSSBCCEEEEEETTTT
T ss_pred             EE--CC-EEEEEeCcCCCeeeeeEEEEcCCCC
Confidence            33  45 688888854     45788888764

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.85  E-value=0.0042  Score=56.51  Aligned_cols=229  Identities=11%  Similarity=0.094  Sum_probs=116.8

Q ss_pred             CCEEEEeeCC----CcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCC-----eEEEEECCCCcEEEE
Q 042434          234 GEYLASSSSD----CSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAE-----VLKLWDVETGICKHT  304 (517)
Q Consensus       234 ~~~l~t~~~d----g~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~  304 (517)
                      +.+++.|+.+    ..+.+||..+. .+.....+......-..+.+  ++..++.|+.++     .+.+||..+.+-...
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~   92 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEE-RWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV   92 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTT-EEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCC-cEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeC
Confidence            3455555543    35778887644 33332222211111122222  567777777553     588999988764432


Q ss_pred             eC--CCCCceEEEEEeCCCCeEEEeeCCCc---eeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCC-----
Q 042434          305 FG--DHGFIVSSCAWFPDSKRLVCGSSDTE---KGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSD-----  374 (517)
Q Consensus       305 ~~--~~~~~v~~i~~~~~~~~l~~~~~d~~---v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----  374 (517)
                      -.  ........+.  -++..++.|+.++.   -.++.+|.....-..............+..-+++.++.|+.+     
T Consensus        93 ~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~  170 (302)
T 2xn4_A           93 ANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQ  170 (302)
T ss_dssp             CCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTE
T ss_pred             CCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCc
Confidence            21  1122222222  26777777876542   237888888765544432222111111222356666666542     


Q ss_pred             --CcEEEEECCCce-EEeec--cCCCeeEEEEcCCCCEEEEEeCC-----CeEEEEEcCCC-CccceEEeCcccCceEEE
Q 042434          375 --KDIRILNLGTYA-ERVIS--EEHPITSLSVSVDCKNFIVNLNS-----QEIHMWDVAGK-WEKPFKYTGHSQNKYVIR  443 (517)
Q Consensus       375 --g~i~i~d~~~~~-~~~~~--~~~~i~~~~~s~~~~~l~~~~~d-----~~i~~~d~~~~-~~~~~~~~~~~~~~~~i~  443 (517)
                        ..+.+||+.+.. .....  ....-.+++. -+++.++.|+.+     ..+.+||+.+. +..+....   .......
T Consensus       171 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~---~~r~~~~  246 (302)
T 2xn4_A          171 CLSTVECYNATTNEWTYIAEMSTRRSGAGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMN---MCRRNAG  246 (302)
T ss_dssp             ECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCS---SCCBSCE
T ss_pred             cccEEEEEeCCCCcEEECCCCccccccccEEE-ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCC---CccccCe
Confidence              458899998876 22211  1111122222 256677777654     36889998654 22221111   1111011


Q ss_pred             eecCCCCCcEEEEecCCC-----cEEEEecCCCce
Q 042434          444 SCFGGLDGTFIASGSENS-----QIYIWNRRNSKP  473 (517)
Q Consensus       444 ~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~  473 (517)
                      ++  ..++++++.|+.++     .+.+||..+.+-
T Consensus       247 ~~--~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  279 (302)
T 2xn4_A          247 VC--AVNGLLYVVGGDDGSCNLASVEYYNPTTDKW  279 (302)
T ss_dssp             EE--EETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             EE--EECCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence            11  13677888887654     489999887653

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.83  E-value=0.0086  Score=54.52  Aligned_cols=227  Identities=12%  Similarity=0.097  Sum_probs=117.4

Q ss_pred             CEEEEeeC--CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCC----CeEEEEECCCCcEEEEeC--
Q 042434          235 EYLASSSS--DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNA----EVLKLWDVETGICKHTFG--  306 (517)
Q Consensus       235 ~~l~t~~~--dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~--  306 (517)
                      .+++.|+.  ...+.+||..++ .+..+..+......-..+.+  ++..++.|+.+    ..+.+||..+++-...-.  
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p   89 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDY-SWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP   89 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTT-EEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred             eEEEEeCCCCCceEEEecCCCC-CEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence            34555654  356888887643 23322222211222222232  56677777755    578899998876443322  


Q ss_pred             CCCCceEEEEEeCCCCeEEEeeCC-C---ceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeC---------
Q 042434          307 DHGFIVSSCAWFPDSKRLVCGSSD-T---EKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLS---------  373 (517)
Q Consensus       307 ~~~~~v~~i~~~~~~~~l~~~~~d-~---~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---------  373 (517)
                      ........+.+  +++.++.|+.+ +   .-.++.+|.....-..............+...+++.++.|+.         
T Consensus        90 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~  167 (306)
T 3ii7_A           90 TPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRV  167 (306)
T ss_dssp             SCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEE
T ss_pred             ccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccc
Confidence            12222222222  67777888765 1   123889998876554443222211111122236666666654         


Q ss_pred             CCcEEEEECCCce-EEeeccC--CCeeEEEEcCCCCEEEEEeCC-----CeEEEEEcCCC-CccceEEeCcccCceEEEe
Q 042434          374 DKDIRILNLGTYA-ERVISEE--HPITSLSVSVDCKNFIVNLNS-----QEIHMWDVAGK-WEKPFKYTGHSQNKYVIRS  444 (517)
Q Consensus       374 dg~i~i~d~~~~~-~~~~~~~--~~i~~~~~s~~~~~l~~~~~d-----~~i~~~d~~~~-~~~~~~~~~~~~~~~~i~~  444 (517)
                      -..+.+||+.+.. .......  ..-.++... +++.++.|+.+     ..+.+||+.+. +..+.........   ..+
T Consensus       168 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~---~~~  243 (306)
T 3ii7_A          168 LNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVT---VKC  243 (306)
T ss_dssp             CCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSC---CEE
T ss_pred             cceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccc---eeE
Confidence            3458899998877 2221111  111222222 56667776543     46889998654 2222211111111   111


Q ss_pred             ecCCCCCcEEEEecCC-----CcEEEEecCCCc
Q 042434          445 CFGGLDGTFIASGSEN-----SQIYIWNRRNSK  472 (517)
Q Consensus       445 ~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~  472 (517)
                      +.  -++.+++.|+.+     ..+.+||..+.+
T Consensus       244 ~~--~~~~i~v~GG~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          244 AA--VGSIVYVLAGFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             EE--ETTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred             EE--ECCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence            11  267788888754     468899988764

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.81  E-value=0.00019  Score=73.57  Aligned_cols=202  Identities=12%  Similarity=-0.026  Sum_probs=117.3

Q ss_pred             CcEEEEEECCCCCEEEEe-eCCCcEEEEEecCCCe-eeEEEEeccCCCCEEEEEECCCC-CeEEEEeCCCeEEEEECCCC
Q 042434          223 NEVWFVQFSNNGEYLASS-SSDCSAIIWKVLEDSK-LTLKHTLRSHQNPVSFVAWSPDD-TKLLTCGNAEVLKLWDVETG  299 (517)
Q Consensus       223 ~~v~~~~~s~~~~~l~t~-~~dg~i~iw~~~~~~~-~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~  299 (517)
                      ..+..++|++.+..|+.+ ...+.|+.+++..... ......+.........+++.+.+ +++++-...+.|.++++...
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~  485 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  485 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence            456688999866666555 3467888888764100 00011111112234567887544 44455456788999998765


Q ss_pred             cEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEE-eCCCcEE
Q 042434          300 ICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISV-LSDKDIR  378 (517)
Q Consensus       300 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~  378 (517)
                      .....+.........+++.|.+..|+.+.....-+|+.+++.+.....+..........++++|++..|+.+ +..+.|.
T Consensus       486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~  565 (699)
T 1n7d_A          486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS  565 (699)
T ss_dssp             CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEE
T ss_pred             ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEE
Confidence            544444333345678899987666665543321238888887655444433333456789999976655544 4567899


Q ss_pred             EEECCCce-EEeec---cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 042434          379 ILNLGTYA-ERVIS---EEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK  425 (517)
Q Consensus       379 i~d~~~~~-~~~~~---~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~  425 (517)
                      ++|+.... ..+..   .......+++..+ ..+++....+.|..++..++
T Consensus       566 ~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G  615 (699)
T 1n7d_A          566 SIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTG  615 (699)
T ss_dssp             EECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTE
T ss_pred             EEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCC
Confidence            99987644 22221   1123445555443 44555556778888886544

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.78  E-value=0.0055  Score=56.60  Aligned_cols=177  Identities=12%  Similarity=0.135  Sum_probs=102.4

Q ss_pred             CCCeEEEEECCC--CcEEE-EeCC-----CCCceEEEEEeC--CCC-eEEEe-eC--CCceeEEEEeCCCCeeE---eee
Q 042434          287 NAEVLKLWDVET--GICKH-TFGD-----HGFIVSSCAWFP--DSK-RLVCG-SS--DTEKGIFMCDCDGNEIK---AWR  349 (517)
Q Consensus       287 ~dg~i~iwd~~~--~~~~~-~~~~-----~~~~v~~i~~~~--~~~-~l~~~-~~--d~~v~i~~~~~~~~~~~---~~~  349 (517)
                      .+|.|.++|..+  ++... .+.+     .......+.+.+  ++. +|+++ ..  +..+.++.++..+....   .+.
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~  160 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR  160 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence            688999999873  33211 1212     234567777766  354 34444 33  45666888887765433   333


Q ss_pred             CcCCCceEEEEEccCCCEEEEEe-----------------CCCcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEe
Q 042434          350 GTRIPKVLDLAVTPDGENLISVL-----------------SDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNL  412 (517)
Q Consensus       350 ~~~~~~i~~~~~~~~~~~l~~~~-----------------~dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  412 (517)
                      .......+++.+.++|.+.++..                 ..|.|..+|.... ......-...+.++|+||++.++++.
T Consensus       161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~-~~~~~~l~~pNGia~spDg~~lYvad  239 (355)
T 3sre_A          161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDV-RVVAEGFDFANGINISPDGKYVYIAE  239 (355)
T ss_dssp             CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCC-EEEEEEESSEEEEEECTTSSEEEEEE
T ss_pred             cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeE-EEeecCCcccCcceECCCCCEEEEEe
Confidence            44445688999999998777654                 1255666665421 33334445678999999998877765


Q ss_pred             -CCCeEEEEEcCCCCcc--ceEEeCcccCceEEEeecCCC-CCcEEEEecCC-CcEEEEec
Q 042434          413 -NSQEIHMWDVAGKWEK--PFKYTGHSQNKYVIRSCFGGL-DGTFIASGSEN-SQIYIWNR  468 (517)
Q Consensus       413 -~d~~i~~~d~~~~~~~--~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~d-g~i~iwd~  468 (517)
                       ..+.|..|++......  ...+. . .  ....-+...+ +|++.+++..+ +.|..|+.
T Consensus       240 t~~~~I~~~~~~~~g~l~~~~~~~-~-~--g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P  296 (355)
T 3sre_A          240 LLAHKIHVYEKHANWTLTPLRVLS-F-D--TLVDNISVDPVTGDLWVGCHPNGMRIFFYDA  296 (355)
T ss_dssp             GGGTEEEEEEECTTSCEEEEEEEE-C-S--SEEEEEEECTTTCCEEEEEESCHHHHHSCCT
T ss_pred             CCCCeEEEEEECCCCcEecCEEEe-C-C--CCCceEEEeCCCCcEEEEecCCceEEEEECC
Confidence             5789999998643121  11221 1 1  1233334466 48777655433 34444443

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.78  E-value=0.042  Score=55.36  Aligned_cols=196  Identities=10%  Similarity=-0.057  Sum_probs=121.7

Q ss_pred             cCcEEEEEECCCCCEEE-EeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeE-EEEeCCCeEEEEECCCC
Q 042434          222 KNEVWFVQFSNNGEYLA-SSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKL-LTCGNAEVLKLWDVETG  299 (517)
Q Consensus       222 ~~~v~~~~~s~~~~~l~-t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l-~s~~~dg~i~iwd~~~~  299 (517)
                      -..+..++|++.+..|. +-..++.|..+++.... ..  ..+.........+++.+.+..| ++-...+.|.+.++...
T Consensus        36 ~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~-~~--~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~  112 (628)
T 4a0p_A           36 VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSA-LE--HVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQ  112 (628)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CE--EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTST
T ss_pred             CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCC-cE--EEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCC
Confidence            35678999999655554 44567888888875432 22  2222222456778887665555 45455778999998655


Q ss_pred             cEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEe-CCCcEE
Q 042434          300 ICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVL-SDKDIR  378 (517)
Q Consensus       300 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~  378 (517)
                      .....+...-.....+++.|....|+.+.....-+|+..++++.....+.. .......+++++++..|+.+. ..+.|.
T Consensus       113 ~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~-~~~~P~GlalD~~~~~LY~aD~~~~~I~  191 (628)
T 4a0p_A          113 HRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-NVGRANGLTIDYAKRRLYWTDLDTNLIE  191 (628)
T ss_dssp             TCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             cEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC-CCCCcceEEEccccCEEEEEECCCCEEE
Confidence            433333344455789999997666666654323459999998766555443 334688999999877666654 456888


Q ss_pred             EEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEc
Q 042434          379 ILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDV  422 (517)
Q Consensus       379 i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~  422 (517)
                      .+|+.... ............+++.. +..+++-...+.|...|.
T Consensus       192 ~~d~dG~~~~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk  235 (628)
T 4a0p_A          192 SSNMLGLNREVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANK  235 (628)
T ss_dssp             EEETTSCSCEEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEET
T ss_pred             EEcCCCCceEEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEEC
Confidence            88886644 22222233445666654 334444444566666664

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.77  E-value=0.0068  Score=56.46  Aligned_cols=148  Identities=9%  Similarity=0.093  Sum_probs=81.4

Q ss_pred             ccCcEEEEEECCCCC-EEEEeeCCCcEEEEEecCCCeee-EEE----EeccCCCCEEEEEECCC---CCeEEEE-eC---
Q 042434          221 HKNEVWFVQFSNNGE-YLASSSSDCSAIIWKVLEDSKLT-LKH----TLRSHQNPVSFVAWSPD---DTKLLTC-GN---  287 (517)
Q Consensus       221 h~~~v~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~~~~~-~~~----~~~~h~~~v~~l~~s~~---~~~l~s~-~~---  287 (517)
                      .-...+.++|.|+|+ +++ +...|.|++++.. + ... .+.    ...........++|+|+   +..|..+ +.   
T Consensus        16 ~l~~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~-g-~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~   92 (353)
T 2g8s_A           16 KLDHPWALAFLPDNHGMLI-TLRGGELRHWQAG-K-GLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGD   92 (353)
T ss_dssp             EESSEEEEEECSTTCCEEE-EETTTEEEEEETT-T-EECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECS
T ss_pred             CCCCcEEEEEcCCCCEEEE-EeCCceEEEEeCC-C-ceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCC
Confidence            445678999999999 555 4567999888742 2 111 111    11122456789999996   4455443 22   


Q ss_pred             ----CCeEEEEECCCC--c--EEE-E---eCC---CCCceEEEEEeCCCCeEEEeeCCCc-----------eeEEEEeCC
Q 042434          288 ----AEVLKLWDVETG--I--CKH-T---FGD---HGFIVSSCAWFPDSKRLVCGSSDTE-----------KGIFMCDCD  341 (517)
Q Consensus       288 ----dg~i~iwd~~~~--~--~~~-~---~~~---~~~~v~~i~~~~~~~~l~~~~~d~~-----------v~i~~~~~~  341 (517)
                          ...|..|+...+  .  ... .   +..   .......++|.|||.++++.+..+.           -+|+.++.+
T Consensus        93 ~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~d  172 (353)
T 2g8s_A           93 DGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQ  172 (353)
T ss_dssp             SSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETT
T ss_pred             CCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCC
Confidence                235666666433  1  111 1   111   1122357999999966655433211           138888887


Q ss_pred             CC-------------eeEeeeCcCCCceEEEEEccCCCEEEEEe
Q 042434          342 GN-------------EIKAWRGTRIPKVLDLAVTPDGENLISVL  372 (517)
Q Consensus       342 ~~-------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  372 (517)
                      +.             ....+.... .....++|+|....|.++.
T Consensus       173 G~~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d  215 (353)
T 2g8s_A          173 GEIPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNE  215 (353)
T ss_dssp             SCCCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEE
T ss_pred             CCCCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEe
Confidence            64             122222222 2577899999433444443

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.76  E-value=0.027  Score=52.56  Aligned_cols=255  Identities=8%  Similarity=0.126  Sum_probs=152.2

Q ss_pred             CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCC
Q 042434          243 DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSK  322 (517)
Q Consensus       243 dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~  322 (517)
                      +..|.|-|+.++... ..+... -    -+.-.+|..+.+|.-. ..++.|+|+++...++.+.-.. .|.-=.|-.+ +
T Consensus        47 ~~~vvIiDl~~~~~~-~rrpi~-A----dsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~-~  117 (494)
T 1bpo_A           47 QAQVVIIDMNDPSNP-IRRPIS-A----DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISL-N  117 (494)
T ss_dssp             CCEEEEEETTSTTSC-EEEECC-C----SEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEET-T
T ss_pred             CCeEEEEECCCCCcc-eecccc-c----ceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCC-C
Confidence            347888898766543 122221 1    2344678887777655 6799999999999888875443 4555556544 3


Q ss_pred             eEEEeeCCCceeEEEEeCCC--CeeEeeeCcC---CCceEEEEEccCCCEEEEEeC-------CCcEEEEECCCceE-Ee
Q 042434          323 RLVCGSSDTEKGIFMCDCDG--NEIKAWRGTR---IPKVLDLAVTPDGENLISVLS-------DKDIRILNLGTYAE-RV  389 (517)
Q Consensus       323 ~l~~~~~d~~v~i~~~~~~~--~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~-------dg~i~i~d~~~~~~-~~  389 (517)
                      .|+..+...   ||.|+..+  .+.+.+..+.   ...|..-..+++.++++..+-       .|.+.+|..+.... ..
T Consensus       118 ~l~lVT~ta---VyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~i  194 (494)
T 1bpo_A          118 TVALVTDNA---VYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPI  194 (494)
T ss_dssp             EEEEECSSE---EEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEE
T ss_pred             eEEEEcCCe---eEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchh
Confidence            454444443   99999964  4555554332   346888888999998775442       46788999877663 33


Q ss_pred             eccCCCeeEEEEcCC---CCEEEEEeC---CCeEEEEEcCCC--Cccce-------EEeCcccCceEEEeecCCCCCcEE
Q 042434          390 ISEEHPITSLSVSVD---CKNFIVNLN---SQEIHMWDVAGK--WEKPF-------KYTGHSQNKYVIRSCFGGLDGTFI  454 (517)
Q Consensus       390 ~~~~~~i~~~~~s~~---~~~l~~~~~---d~~i~~~d~~~~--~~~~~-------~~~~~~~~~~~i~~~~~s~~~~~l  454 (517)
                      .+|......+.+..+   ...++.+..   .+.+++.++...  .....       .+.......+.+.... ++.-..+
T Consensus       195 eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqv-s~kygvi  273 (494)
T 1bpo_A          195 EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI-SEKHDVV  273 (494)
T ss_dssp             CCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEE-ETTTTEE
T ss_pred             eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEe-cccCCEE
Confidence            333332222222211   123333333   378999998432  11111       0111122344444333 5666688


Q ss_pred             EEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCC
Q 042434          455 ASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGP  511 (517)
Q Consensus       455 ~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~  511 (517)
                      +.-+.-|.|++||+.++.++..-+-...+|..-+.+... .=++.....|.|.--.+
T Consensus       274 yviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~-~Gi~~Vnr~GqVl~v~v  329 (494)
T 1bpo_A          274 FLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEAT-AGIIGVNRKGQVLSVCV  329 (494)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTT-TEEEEEETTCEEEEEEE
T ss_pred             EEEecCceEEEEecccceeeeeecccCCceEEecccCCC-CcEEEEccCceEEEEEE
Confidence            888899999999999999988776556666655555443 23445556666654433

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.73  E-value=0.0032  Score=57.49  Aligned_cols=226  Identities=9%  Similarity=0.031  Sum_probs=115.6

Q ss_pred             CCCeEEEEeCC----CeEEEEECCCCcEEEEeC--CCCCceEEEEEeCCCCeEEEeeC----CCc---eeEEEEeCCCCe
Q 042434          278 DDTKLLTCGNA----EVLKLWDVETGICKHTFG--DHGFIVSSCAWFPDSKRLVCGSS----DTE---KGIFMCDCDGNE  344 (517)
Q Consensus       278 ~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~----d~~---v~i~~~~~~~~~  344 (517)
                      ++..++.|+.+    ..+.+||..+++-...-.  ....... ++ ..++..++.|+.    ++.   -.++.+|..+..
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~-~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~  101 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLA-GC-VVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ  101 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCE-EE-EETTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccce-EE-EECCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence            45666676642    368899988776443211  1111112 22 226677777775    221   128889988765


Q ss_pred             eEeeeCcCCCceEEEEEccCCCEEEEEeCC-----CcEEEEECCCce-EEeec--cCCCeeEEEEcCCCCEEEEEeCC--
Q 042434          345 IKAWRGTRIPKVLDLAVTPDGENLISVLSD-----KDIRILNLGTYA-ERVIS--EEHPITSLSVSVDCKNFIVNLNS--  414 (517)
Q Consensus       345 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~-~~~~~--~~~~i~~~~~s~~~~~l~~~~~d--  414 (517)
                      -.................-+++.++.|+.+     ..+.+||+.+.+ .....  ....-.+++.. +++.++.|+.+  
T Consensus       102 W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~  180 (308)
T 1zgk_A          102 WSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGFDGT  180 (308)
T ss_dssp             EEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSS
T ss_pred             EeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-CCEEEEEeCCCCC
Confidence            544432222111111122266677776643     468899998876 22211  11111122222 56667776654  


Q ss_pred             ---CeEEEEEcCCC-CccceEEeCcccCceEEEeecCCCCCcEEEEecCC-----CcEEEEecCCCceeE--EecCCCCC
Q 042434          415 ---QEIHMWDVAGK-WEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSEN-----SQIYIWNRRNSKPIE--ILSGHSMT  483 (517)
Q Consensus       415 ---~~i~~~d~~~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~--~~~~h~~~  483 (517)
                         ..+..||+.+. +........   ......++.  -++++++.|+.+     ..+.+||+.+.+-..  .+......
T Consensus       181 ~~~~~~~~yd~~~~~W~~~~~~p~---~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~  255 (308)
T 1zgk_A          181 NRLNSAECYYPERNEWRMITAMNT---IRSGAGVCV--LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSA  255 (308)
T ss_dssp             CBCCCEEEEETTTTEEEECCCCSS---CCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBS
T ss_pred             CcCceEEEEeCCCCeEeeCCCCCC---ccccceEEE--ECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccc
Confidence               45888998654 222111111   111111111  267788888765     469999988765332  22211112


Q ss_pred             eeEEEecCCCCcEEEEeeCC-----CcEEEeCCCCC
Q 042434          484 VNCVSWNPKRPKMLASASDD-----HTIRIWGPCQS  514 (517)
Q Consensus       484 v~~v~~~~~~~~~l~s~~~d-----g~v~iw~~~~~  514 (517)
                      ...+.+  ++ .+++.||.+     ..+.+||+.+.
T Consensus       256 ~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~~  288 (308)
T 1zgk_A          256 LGITVH--QG-RIYVLGGYDGHTFLDSVECYDPDTD  288 (308)
T ss_dssp             CEEEEE--TT-EEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             eEEEEE--CC-EEEEEcCcCCCcccceEEEEcCCCC
Confidence            222222  44 678888754     35778887654

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.72  E-value=0.0056  Score=55.80  Aligned_cols=183  Identities=13%  Similarity=0.196  Sum_probs=113.8

Q ss_pred             CCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccC----CC---EEEEEeC---CCcEEEEEC--CCceEE
Q 042434          321 SKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPD----GE---NLISVLS---DKDIRILNL--GTYAER  388 (517)
Q Consensus       321 ~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~---~l~~~~~---dg~i~i~d~--~~~~~~  388 (517)
                      ...++.....+-  +.++|+.++.+..+..   +.++.+..-|+    |+   .+++...   +++|.+|++  .+....
T Consensus        40 ~s~ii~t~k~~g--L~Vydl~G~~l~~~~~---g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~  114 (355)
T 3amr_A           40 NSKLITTNKKSG--LVVYSLDGKMLHSYNT---GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (355)
T ss_dssp             GCEEEEEETTTE--EEEEETTSCEEEEECC---SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEE
T ss_pred             ccEEEEEcCCCC--EEEEcCCCcEEEEccC---CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCcee
Confidence            345555555554  9999999888887654   24666655552    22   2333333   578999976  343322


Q ss_pred             eec-------cC-CCeeEEEE--cCC-CC-EEEEEeCCCeEEEEEcCC---C---CccceEEeCcccCceEEEeecCCCC
Q 042434          389 VIS-------EE-HPITSLSV--SVD-CK-NFIVNLNSQEIHMWDVAG---K---WEKPFKYTGHSQNKYVIRSCFGGLD  450 (517)
Q Consensus       389 ~~~-------~~-~~i~~~~~--s~~-~~-~l~~~~~d~~i~~~d~~~---~---~~~~~~~~~~~~~~~~i~~~~~s~~  450 (517)
                      ...       .. ..+..+++  +|. ++ ++++...+|.+..|++..   +   .+.++.+....+    +..|...+.
T Consensus       115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq----~EgcvvDd~  190 (355)
T 3amr_A          115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQ----TEGMAADDE  190 (355)
T ss_dssp             ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSC----EEEEEEETT
T ss_pred             eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCC----cceEEEcCC
Confidence            221       12 55667777  774 44 688888899999999832   1   123344433322    444555777


Q ss_pred             CcEEEEecCCCcEEEEecC-----CCceeEEec-CC-CCCeeEEEe--cCCCC-cEEEEeeCCCcEEEeCCC
Q 042434          451 GTFIASGSENSQIYIWNRR-----NSKPIEILS-GH-SMTVNCVSW--NPKRP-KMLASASDDHTIRIWGPC  512 (517)
Q Consensus       451 ~~~l~~~~~dg~i~iwd~~-----~~~~~~~~~-~h-~~~v~~v~~--~~~~~-~~l~s~~~dg~v~iw~~~  512 (517)
                      ...|+.+-++.-|..++.+     +++.+..+. ++ ...+..|+.  .+++. .+++|+-.+++..+|+..
T Consensus       191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            8899999998777777754     345665553 22 246888887  45553 455555577899999986

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.69  E-value=0.015  Score=53.13  Aligned_cols=224  Identities=9%  Similarity=0.029  Sum_probs=115.7

Q ss_pred             eEEEEeCCCeEEEEECCCCcEEE-EeCCCCCceEEEEEeCCCCeEEEeeC-----C--Cc--eeEEEEeCCCCeeEeeeC
Q 042434          281 KLLTCGNAEVLKLWDVETGICKH-TFGDHGFIVSSCAWFPDSKRLVCGSS-----D--TE--KGIFMCDCDGNEIKAWRG  350 (517)
Q Consensus       281 ~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~i~~~~~~~~l~~~~~-----d--~~--v~i~~~~~~~~~~~~~~~  350 (517)
                      +++.|+  ..+.+||..+++-.. .+..............++..++.|+.     .  ..  -.++.+|.....-.....
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~   84 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP   84 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred             EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence            344555  578999998887543 22112223333344457788888874     1  11  127888888765544432


Q ss_pred             cCCCceEEEEEccCCCEEEEEeCC--------CcEEEEECCCce-EEeecc-CCCeeEEEEcCCCCEEEEEeC-C-----
Q 042434          351 TRIPKVLDLAVTPDGENLISVLSD--------KDIRILNLGTYA-ERVISE-EHPITSLSVSVDCKNFIVNLN-S-----  414 (517)
Q Consensus       351 ~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~-~~~~~~-~~~i~~~~~s~~~~~l~~~~~-d-----  414 (517)
                      ............-++..++.|+.+        ..+.+||..+.+ ...... .......+...+++.++.|+. +     
T Consensus        85 ~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~  164 (315)
T 4asc_A           85 LPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCL  164 (315)
T ss_dssp             BSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBC
T ss_pred             CCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCccc
Confidence            222221111222256666776632        468999998876 222111 111111222245666777765 2     


Q ss_pred             CeEEEEEcCCC-CccceEEeCcccCceEEEeecCCCCCcEEEEecCCC-----cEEEEecCCCceeEE--ecCCCCCeeE
Q 042434          415 QEIHMWDVAGK-WEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENS-----QIYIWNRRNSKPIEI--LSGHSMTVNC  486 (517)
Q Consensus       415 ~~i~~~d~~~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~--~~~h~~~v~~  486 (517)
                      ..+.+||..+. +............   ..++  ..++++++.|+.++     .+.+||..+.+-...  +.........
T Consensus       165 ~~~~~yd~~~~~W~~~~~~p~~r~~---~~~~--~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~  239 (315)
T 4asc_A          165 NKMCVYDPKKFEWKELAPMQTARSL---FGAT--VHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSL  239 (315)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBS---CEEE--EETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred             ceEEEEeCCCCeEEECCCCCCchhc---eEEE--EECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeE
Confidence            46889998654 2222211111111   1111  12677788887654     588999887653332  2211122222


Q ss_pred             EEecCCCCcEEEEeeCCC--------------cEEEeCCCCC
Q 042434          487 VSWNPKRPKMLASASDDH--------------TIRIWGPCQS  514 (517)
Q Consensus       487 v~~~~~~~~~l~s~~~dg--------------~v~iw~~~~~  514 (517)
                      +.+  ++ .+++.||.++              .+.+||+.+.
T Consensus       240 ~~~--~~-~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~  278 (315)
T 4asc_A          240 VSL--VG-TLYAIGGFATLETESGELVPTELNDIWRYNEEEK  278 (315)
T ss_dssp             EEE--TT-EEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred             EEE--CC-EEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence            233  44 6778887642              3667887654

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.67  E-value=0.019  Score=53.41  Aligned_cols=239  Identities=11%  Similarity=0.073  Sum_probs=122.8

Q ss_pred             CCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEe-------CCCCCceEEEEEeCC---CCeEEEee-C---CC--
Q 042434          268 NPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTF-------GDHGFIVSSCAWFPD---SKRLVCGS-S---DT--  331 (517)
Q Consensus       268 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------~~~~~~v~~i~~~~~---~~~l~~~~-~---d~--  331 (517)
                      .....|+|.|+|+.|+++...|.|++++. ++.....+       .........++++|+   +..|+++. .   ++  
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA   96 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence            34689999999984445567899999985 34321111       112345689999996   44444442 2   11  


Q ss_pred             ceeEEEEeCCCC--e---eEe-eeCc-----CCCceEEEEEccCCCEEEEEeC-------------CCcEEEEECCCc--
Q 042434          332 EKGIFMCDCDGN--E---IKA-WRGT-----RIPKVLDLAVTPDGENLISVLS-------------DKDIRILNLGTY--  385 (517)
Q Consensus       332 ~v~i~~~~~~~~--~---~~~-~~~~-----~~~~i~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~--  385 (517)
                      ..+|..++....  .   ... +...     .......+.|.|||.+.++.+.             .|.|.-+|....  
T Consensus        97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p  176 (353)
T 2g8s_A           97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP  176 (353)
T ss_dssp             EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred             eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence            234666665421  1   111 1111     1112457999999965555433             246777776543  


Q ss_pred             -----------e-EEeeccCCCeeEEEEcCCCCEEEEEeCCC----eEEEEEcCC--CCc--------------------
Q 042434          386 -----------A-ERVISEEHPITSLSVSVDCKNFIVNLNSQ----EIHMWDVAG--KWE--------------------  427 (517)
Q Consensus       386 -----------~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~----~i~~~d~~~--~~~--------------------  427 (517)
                                 . ............++|+|....|.++....    .|.+.....  ++.                    
T Consensus       177 ~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~  256 (353)
T 2g8s_A          177 DDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEI  256 (353)
T ss_dssp             TTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSS
T ss_pred             CCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCC
Confidence                       1 11112223477899999433444433221    222211100  000                    


Q ss_pred             ------cceEEeCcccCceEEEeec---C-CCCCcEEEEecCCCcEEEEecCCCceeEE---ecCCCCCeeEEEecCCCC
Q 042434          428 ------KPFKYTGHSQNKYVIRSCF---G-GLDGTFIASGSENSQIYIWNRRNSKPIEI---LSGHSMTVNCVSWNPKRP  494 (517)
Q Consensus       428 ------~~~~~~~~~~~~~~i~~~~---~-s~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~h~~~v~~v~~~~~~~  494 (517)
                            ....+..+. ....+....   | ..+|.++++.-..+.|...++..++.+..   +......+.++++.|+| 
T Consensus       257 ~~~~~~P~~~~~~~~-ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG-  334 (353)
T 2g8s_A          257 VAGTEQPVFYWKDSP-AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDG-  334 (353)
T ss_dssp             CTTSCCCSEEESSCC-CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTS-
T ss_pred             CCCccCCeEEeCCCc-CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCC-
Confidence                  001111111 111111110   0 13577777777778888888876654332   22223578999999999 


Q ss_pred             cEEEEee-CCCcEEEeCC
Q 042434          495 KMLASAS-DDHTIRIWGP  511 (517)
Q Consensus       495 ~~l~s~~-~dg~v~iw~~  511 (517)
                      .++++.. .+|  +||.+
T Consensus       335 ~lyv~td~~~g--~I~ri  350 (353)
T 2g8s_A          335 YLYVLTDESSG--ELLKV  350 (353)
T ss_dssp             CEEEEECSTTE--EEEEE
T ss_pred             cEEEEEeCCCC--EEEEE
Confidence            4555432 345  44543

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.66  E-value=0.079  Score=55.06  Aligned_cols=264  Identities=10%  Similarity=0.067  Sum_probs=151.5

Q ss_pred             cCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEe-ccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc
Q 042434          222 KNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTL-RSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI  300 (517)
Q Consensus       222 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~-~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~  300 (517)
                      ...|+++.-..+|. |..|+.+| +..||-   ......... ......|.++.-..++ .|..|+.+| +..||..+.+
T Consensus        21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG---~~~~~~~~~~~~~~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~   93 (758)
T 3ott_A           21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDG---YSTQQHFTYGENNNTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADR   93 (758)
T ss_dssp             CCCEEEEEECTTSC-EEEEESSC-EEEECS---SCEEECSCTTSTTSSCEEEEEEETTT-EEEEEETTE-EEEEETTTTE
T ss_pred             cceEEEEEECCCCC-EEEEECCC-ccccCC---CceEEEEccCCCCCceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCE
Confidence            56799998888874 55666777 445553   222111000 1123568888777666 555666555 7899988764


Q ss_pred             EEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeee----CcCCCceEEEEEccCCCEEEEEeCCCc
Q 042434          301 CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWR----GTRIPKVLDLAVTPDGENLISVLSDKD  376 (517)
Q Consensus       301 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~dg~  376 (517)
                      ...........|.++.. .++ .+..++.+|   ++.++..+.....+.    ......|.++....+|...+ ++.+ -
T Consensus        94 f~~~~~~~~~~i~~i~~-~~g-~lWigt~~G---l~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-G  166 (758)
T 3ott_A           94 YEQPETDFPTDVRTMAL-QGD-TLWLGALNG---LYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-G  166 (758)
T ss_dssp             ECCCSCCCCSCEEEEEE-ETT-EEEEEETTE---EEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEE-EETT-E
T ss_pred             EECcccCCCceEEEEEe-cCC-cEEEEcCCc---ceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-C
Confidence            33211112345776654 344 566666664   888888766655441    12234688888887777655 4444 5


Q ss_pred             EEEEECCCceEEeecc-------CCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCC
Q 042434          377 IRILNLGTYAERVISE-------EHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGL  449 (517)
Q Consensus       377 i~i~d~~~~~~~~~~~-------~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~  449 (517)
                      +..+|..+........       ...|.++...+++..+.+++. +.+..+|..+. . ...+...  ....+.+++...
T Consensus       167 l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~-~-~~~~~~l--~~~~i~~i~~d~  241 (758)
T 3ott_A          167 LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTG-Q-IKQTEAF--HNNSIKSLALDG  241 (758)
T ss_dssp             EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTT-E-EEEEEEE--EEEEEEEEEECT
T ss_pred             HhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCC-e-EEeccCC--CCCeEEEEEEcC
Confidence            8888887765322211       123778888777776667764 46888887654 1 1112111  112355555456


Q ss_pred             CCcEEEEecCCCcEEEEecCCCceeEEec-------CCCCCeeEEEecCCCCcEEEEeeCCCcEEEe
Q 042434          450 DGTFIASGSENSQIYIWNRRNSKPIEILS-------GHSMTVNCVSWNPKRPKMLASASDDHTIRIW  509 (517)
Q Consensus       450 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw  509 (517)
                      +|.+.+ |+.+ -+.+++..+++......       -....|.++....+| . |..|+..| +.++
T Consensus       242 ~g~lWi-gT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g-~-lWiGT~~G-l~~~  303 (758)
T 3ott_A          242 NGDLLA-GTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEH-N-IWLGTDYG-ISLS  303 (758)
T ss_dssp             TCCEEE-EETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTC-C-EEEEESSS-EEEE
T ss_pred             CCCEEE-EeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCC-C-EEEEeCCc-cccc
Confidence            666544 4444 48888877655332211       123468899888877 3 44555556 4444

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.61  E-value=0.034  Score=51.33  Aligned_cols=193  Identities=11%  Similarity=0.080  Sum_probs=113.1

Q ss_pred             EEeccccCcEEEEEECCCCCEEEEee------------CCCcEEEEEecCC-CeeeEEEEecc-----CCCCEEEEEECC
Q 042434          216 QILTEHKNEVWFVQFSNNGEYLASSS------------SDCSAIIWKVLED-SKLTLKHTLRS-----HQNPVSFVAWSP  277 (517)
Q Consensus       216 ~~l~~h~~~v~~~~~s~~~~~l~t~~------------~dg~i~iw~~~~~-~~~~~~~~~~~-----h~~~v~~l~~s~  277 (517)
                      ..+.+-....-.+...|+|..+++++            .+|.|.++|..+. .+...+ .+.+     .......+.+.+
T Consensus        43 ~~i~~~~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~  121 (355)
T 3sre_A           43 NLVKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFI  121 (355)
T ss_dssp             EECTTCCSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEE
T ss_pred             EEeCCCCCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEE
Confidence            33444223344556788876555542            6899999998632 122222 2222     234667777755


Q ss_pred             --CCC-eEEEE-eC--CCeEEEEECCCC--c--EEEEeCCC-CCceEEEEEeCCCCeEEEeeC---C------------C
Q 042434          278 --DDT-KLLTC-GN--AEVLKLWDVETG--I--CKHTFGDH-GFIVSSCAWFPDSKRLVCGSS---D------------T  331 (517)
Q Consensus       278 --~~~-~l~s~-~~--dg~i~iwd~~~~--~--~~~~~~~~-~~~v~~i~~~~~~~~l~~~~~---d------------~  331 (517)
                        ++. +|+++ ..  +.+|.+|++..+  .  .+..+.+. -.....+.+.++|.+.++...   |            .
T Consensus       122 d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~  201 (355)
T 3sre_A          122 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLA  201 (355)
T ss_dssp             CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCC
T ss_pred             CCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCC
Confidence              343 44444 32  467888877543  2  23334332 346788999999987776541   1            2


Q ss_pred             ceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEe-CCCcEEEEECCC-ce---EEeeccCCCeeEEEEcC-CC
Q 042434          332 EKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVL-SDKDIRILNLGT-YA---ERVISEEHPITSLSVSV-DC  405 (517)
Q Consensus       332 ~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~-~~---~~~~~~~~~i~~~~~s~-~~  405 (517)
                      .-.++.++..  .+...... ....+.++|+||++.++++. ..+.|..|++.. +.   ............+++.+ +|
T Consensus       202 ~g~vyr~d~~--~~~~~~~~-l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G  278 (355)
T 3sre_A          202 WSFVTYYSPN--DVRVVAEG-FDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTG  278 (355)
T ss_dssp             CEEEEEECTT--CCEEEEEE-ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTC
T ss_pred             ccEEEEEECC--eEEEeecC-CcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCC
Confidence            2348888774  22222211 23578999999998877665 567899999863 22   22223345677888888 58


Q ss_pred             CEEEEEe
Q 042434          406 KNFIVNL  412 (517)
Q Consensus       406 ~~l~~~~  412 (517)
                      +..+++.
T Consensus       279 ~lwva~~  285 (355)
T 3sre_A          279 DLWVGCH  285 (355)
T ss_dssp             CEEEEEE
T ss_pred             cEEEEec
Confidence            7766554

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.57  E-value=0.032  Score=50.95  Aligned_cols=227  Identities=9%  Similarity=0.045  Sum_probs=115.1

Q ss_pred             EEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeC----C-------CeEEEEECCCCcEEEE
Q 042434          236 YLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGN----A-------EVLKLWDVETGICKHT  304 (517)
Q Consensus       236 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~----d-------g~i~iwd~~~~~~~~~  304 (517)
                      +++.|+  ..+.+||..++ .+.. ..+..............++..++.|+.    +       ..+.+||..+++-...
T Consensus         7 l~~~GG--~~~~~yd~~~~-~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~   82 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAAN-ECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM   82 (315)
T ss_dssp             EEEEET--TEEEEEETTTT-EEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC
T ss_pred             EEEEcC--CceEEECCCCC-eEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEEC
Confidence            344555  46889998654 3332 222222222333334457778888873    1       1277889888764332


Q ss_pred             eCCC--CCceEEEEEeCCCCeEEEeeCC------CceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeC-C-
Q 042434          305 FGDH--GFIVSSCAWFPDSKRLVCGSSD------TEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLS-D-  374 (517)
Q Consensus       305 ~~~~--~~~v~~i~~~~~~~~l~~~~~d------~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d-  374 (517)
                      -...  ......+.  -++..++.|+.+      ..-.++.+|..+..-..............+...+++.++.|+. + 
T Consensus        83 ~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~  160 (315)
T 4asc_A           83 PPLPSPRCLFGLGE--ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSD  160 (315)
T ss_dssp             CCBSSCEESCEEEE--ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTT
T ss_pred             CCCCcchhceeEEE--ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCC
Confidence            1111  11111222  266777777732      1123888998876544433222222222222346667777766 2 


Q ss_pred             ----CcEEEEECCCce-EEeeccC-CC-eeEEEEcCCCCEEEEEeCCC-----eEEEEEcCCC-CccceEEeCcccCceE
Q 042434          375 ----KDIRILNLGTYA-ERVISEE-HP-ITSLSVSVDCKNFIVNLNSQ-----EIHMWDVAGK-WEKPFKYTGHSQNKYV  441 (517)
Q Consensus       375 ----g~i~i~d~~~~~-~~~~~~~-~~-i~~~~~s~~~~~l~~~~~d~-----~i~~~d~~~~-~~~~~~~~~~~~~~~~  441 (517)
                          ..+.+||+.+.. ....... .. -.+++ .-+++.++.|+.++     .+.+||+.+. +.......   .....
T Consensus       161 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p---~~r~~  236 (315)
T 4asc_A          161 RKCLNKMCVYDPKKFEWKELAPMQTARSLFGAT-VHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFP---QERSS  236 (315)
T ss_dssp             SCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCS---SCCBS
T ss_pred             CcccceEEEEeCCCCeEEECCCCCCchhceEEE-EECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCC---Ccccc
Confidence                468999998876 2221111 11 11222 22667777776544     5888888654 22221111   11111


Q ss_pred             EEeecCCCCCcEEEEecCCC--------------cEEEEecCCCcee
Q 042434          442 IRSCFGGLDGTFIASGSENS--------------QIYIWNRRNSKPI  474 (517)
Q Consensus       442 i~~~~~s~~~~~l~~~~~dg--------------~i~iwd~~~~~~~  474 (517)
                      ..++  ..++++++.|+.++              .+.+||..+.+-.
T Consensus       237 ~~~~--~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~  281 (315)
T 4asc_A          237 LSLV--SLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWE  281 (315)
T ss_dssp             CEEE--EETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEE
T ss_pred             eeEE--EECCEEEEECCccccCcCCccccccccCcEEEecCCCChhh
Confidence            1111  12567777777532              4778888776543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.49  E-value=0.018  Score=52.38  Aligned_cols=229  Identities=7%  Similarity=-0.030  Sum_probs=115.5

Q ss_pred             CCCEEEEeeC----CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeC----C-----CeEEEEECCCC
Q 042434          233 NGEYLASSSS----DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGN----A-----EVLKLWDVETG  299 (517)
Q Consensus       233 ~~~~l~t~~~----dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~----d-----g~i~iwd~~~~  299 (517)
                      ++.+++.|+.    -..+.+||..+. .+.....+......-..+.+  ++..++.|+.    +     ..+.+||+.+.
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~  100 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNG-TWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTN  100 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTT-EEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCC-eEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence            5566666663    235778887543 23222211111111122222  5667777765    2     36888998877


Q ss_pred             cEEEEe--CCCCCceEEEEEeCCCCeEEEeeCCCc---eeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCC
Q 042434          300 ICKHTF--GDHGFIVSSCAWFPDSKRLVCGSSDTE---KGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSD  374 (517)
Q Consensus       300 ~~~~~~--~~~~~~v~~i~~~~~~~~l~~~~~d~~---v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  374 (517)
                      +-...-  .........+.+  +++.++.|+.++.   -.++.+|..+..-..............+..-++..++.|+.+
T Consensus       101 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~  178 (308)
T 1zgk_A          101 QWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFD  178 (308)
T ss_dssp             EEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBC
T ss_pred             eEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeCCC
Confidence            643321  111222222222  6777777765432   238889988765544432221111111122266677777654


Q ss_pred             -----CcEEEEECCCceEEee-c--cCCCeeEEEEcCCCCEEEEEeCC-----CeEEEEEcCCC-CccceEEeCcccCce
Q 042434          375 -----KDIRILNLGTYAERVI-S--EEHPITSLSVSVDCKNFIVNLNS-----QEIHMWDVAGK-WEKPFKYTGHSQNKY  440 (517)
Q Consensus       375 -----g~i~i~d~~~~~~~~~-~--~~~~i~~~~~s~~~~~l~~~~~d-----~~i~~~d~~~~-~~~~~~~~~~~~~~~  440 (517)
                           ..+.+||+.+..-... .  ....-.+++.. +++.++.|+.+     ..+.+||+.+. +..+.........  
T Consensus       179 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~--  255 (308)
T 1zgk_A          179 GTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSA--  255 (308)
T ss_dssp             SSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBS--
T ss_pred             CCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccc--
Confidence                 4689999988762211 1  11111222222 56677777654     46899998654 2222111111111  


Q ss_pred             EEEeecCCCCCcEEEEecCC-----CcEEEEecCCCc
Q 042434          441 VIRSCFGGLDGTFIASGSEN-----SQIYIWNRRNSK  472 (517)
Q Consensus       441 ~i~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~  472 (517)
                       ..++  ..++++++.|+.+     ..+.+||..+.+
T Consensus       256 -~~~~--~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          256 -LGIT--VHQGRIYVLGGYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             -CEEE--EETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             -eEEE--EECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence             1111  1267778888754     357888887664

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.43  E-value=0.0084  Score=55.98  Aligned_cols=228  Identities=11%  Similarity=0.024  Sum_probs=111.0

Q ss_pred             CCCeEEEEeCC-CeEEEEECCC--CcEEEEeCC----CCCceEEEEEeCCCCeEEEeeC-C---C----ceeEEEEeCCC
Q 042434          278 DDTKLLTCGNA-EVLKLWDVET--GICKHTFGD----HGFIVSSCAWFPDSKRLVCGSS-D---T----EKGIFMCDCDG  342 (517)
Q Consensus       278 ~~~~l~s~~~d-g~i~iwd~~~--~~~~~~~~~----~~~~v~~i~~~~~~~~l~~~~~-d---~----~v~i~~~~~~~  342 (517)
                      ++..++.|+.+ ..+.++|+.+  .+-. .+..    ......++.+  ++..++.|+. +   +    .-.++.+|...
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~-~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~   95 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWT-ALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT   95 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEE-ECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCee-ECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence            55566666543 4688888864  3322 2221    1112222222  5677777776 2   1    12388999887


Q ss_pred             CeeEeeeCcC-CCceEEEEEccCCCEEEEEeCC---------------------------------------CcEEEEEC
Q 042434          343 NEIKAWRGTR-IPKVLDLAVTPDGENLISVLSD---------------------------------------KDIRILNL  382 (517)
Q Consensus       343 ~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d---------------------------------------g~i~i~d~  382 (517)
                      ..-....... .......+...+++.++.|+.+                                       ..+.+||.
T Consensus        96 ~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~  175 (357)
T 2uvk_A           96 NSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDP  175 (357)
T ss_dssp             TEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEET
T ss_pred             CcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeC
Confidence            6554433322 2222222222567777788754                                       57899999


Q ss_pred             CCce-EEeec--cCCCe-eEEEEcCCCCEEEEEeC------CCeEEEEEc--CCC-CccceEEeCcccCceEEEeecCCC
Q 042434          383 GTYA-ERVIS--EEHPI-TSLSVSVDCKNFIVNLN------SQEIHMWDV--AGK-WEKPFKYTGHSQNKYVIRSCFGGL  449 (517)
Q Consensus       383 ~~~~-~~~~~--~~~~i-~~~~~s~~~~~l~~~~~------d~~i~~~d~--~~~-~~~~~~~~~~~~~~~~i~~~~~s~  449 (517)
                      .+.. .....  ..... .+++. -+++.++.|+.      ...+..||+  .+. +..+........ .....++  ..
T Consensus       176 ~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~-~~~~~~~--~~  251 (357)
T 2uvk_A          176 STQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDG-VAGGFAG--IS  251 (357)
T ss_dssp             TTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTC-CBSCEEE--EE
T ss_pred             CCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcc-cccceEE--EE
Confidence            8877 22211  11112 23333 25566666653      345777876  321 222221111110 0000011  23


Q ss_pred             CCcEEEEecCC----------------------CcEEEEecCCCc--eeEEecCCCCCeeEEEecCCCCcEEEEeeCCC-
Q 042434          450 DGTFIASGSEN----------------------SQIYIWNRRNSK--PIEILSGHSMTVNCVSWNPKRPKMLASASDDH-  504 (517)
Q Consensus       450 ~~~~l~~~~~d----------------------g~i~iwd~~~~~--~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg-  504 (517)
                      ++++++.|+.+                      ..+.+||+.+.+  .+..+......-.++.  -++ .+++.||.++ 
T Consensus       252 ~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~-~i~v~GG~~~~  328 (357)
T 2uvk_A          252 NDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLP--WNN-SLLIIGGETAG  328 (357)
T ss_dssp             TTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEE--ETT-EEEEEEEECGG
T ss_pred             CCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEE--eCC-EEEEEeeeCCC
Confidence            67777777742                      257889987654  4444443222222333  345 6888888653 


Q ss_pred             -----cEEEeCCCCCC
Q 042434          505 -----TIRIWGPCQSS  515 (517)
Q Consensus       505 -----~v~iw~~~~~~  515 (517)
                           .|.++++++++
T Consensus       329 ~~~~~~v~~l~~~~~~  344 (357)
T 2uvk_A          329 GKAVTDSVLITVKDNK  344 (357)
T ss_dssp             GCEEEEEEEEEC-CCS
T ss_pred             CCEeeeEEEEEEcCcE
Confidence                 35555777655

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.42  E-value=0.04  Score=50.32  Aligned_cols=229  Identities=12%  Similarity=0.107  Sum_probs=114.2

Q ss_pred             EEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeC----CC-------eEEEEECCCCcEEEE
Q 042434          236 YLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGN----AE-------VLKLWDVETGICKHT  304 (517)
Q Consensus       236 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~----dg-------~i~iwd~~~~~~~~~  304 (517)
                      .++.|+.  .+..||..++. +.. .................++..++.|+.    ++       .+.+||..+++-...
T Consensus        18 i~~~GG~--~~~~yd~~~~~-W~~-~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~   93 (318)
T 2woz_A           18 ILLVNDT--AAVAYDPMENE-CYL-TALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGL   93 (318)
T ss_dssp             EEEECSS--EEEEEETTTTE-EEE-EEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEEC
T ss_pred             hhhcccc--ceEEECCCCCc-eec-ccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEEC
Confidence            3444543  37888876542 322 222211122223334456778888873    12       277889887765432


Q ss_pred             eC--CCCCceEEEEEeCCCCeEEEeeCC--C---ceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeC----
Q 042434          305 FG--DHGFIVSSCAWFPDSKRLVCGSSD--T---EKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLS----  373 (517)
Q Consensus       305 ~~--~~~~~v~~i~~~~~~~~l~~~~~d--~---~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----  373 (517)
                      -.  ........+.+  ++..++.|+.+  +   .-.++.+|..+..-..............+...+++.++.|+.    
T Consensus        94 ~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~  171 (318)
T 2woz_A           94 PPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDK  171 (318)
T ss_dssp             SCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSS
T ss_pred             CCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCC
Confidence            11  11111122222  66777777754  1   123888898876554443222211111222246667777764    


Q ss_pred             --CCcEEEEECCCce-EEeec--cCCCeeEEEEcCCCCEEEEEeCC-----CeEEEEEcCCC-CccceEEeCcccCceEE
Q 042434          374 --DKDIRILNLGTYA-ERVIS--EEHPITSLSVSVDCKNFIVNLNS-----QEIHMWDVAGK-WEKPFKYTGHSQNKYVI  442 (517)
Q Consensus       374 --dg~i~i~d~~~~~-~~~~~--~~~~i~~~~~s~~~~~l~~~~~d-----~~i~~~d~~~~-~~~~~~~~~~~~~~~~i  442 (517)
                        -..+.+||+.+.. .....  ....-.+++. -+++.++.|+.+     ..+.+||+.+. +............   .
T Consensus       172 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~---~  247 (318)
T 2woz_A          172 KCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSS---I  247 (318)
T ss_dssp             CBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBS---C
T ss_pred             CccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccc---e
Confidence              2469999998877 22211  1111122222 256667776543     35778888653 2222221111111   1


Q ss_pred             EeecCCCCCcEEEEecCC--------------CcEEEEecCCCceeEE
Q 042434          443 RSCFGGLDGTFIASGSEN--------------SQIYIWNRRNSKPIEI  476 (517)
Q Consensus       443 ~~~~~s~~~~~l~~~~~d--------------g~i~iwd~~~~~~~~~  476 (517)
                      .++  ..++++++.|+.+              ..+.+||..+.+-...
T Consensus       248 ~~~--~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  293 (318)
T 2woz_A          248 SLV--SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM  293 (318)
T ss_dssp             EEE--EETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred             EEE--EECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence            111  2356777777754              3578888887654433

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.36  E-value=0.059  Score=49.22  Aligned_cols=223  Identities=10%  Similarity=0.073  Sum_probs=111.7

Q ss_pred             eEEEEeCCCeEEEEECCCCcEEE-EeCCCCCceEEEEEeCCCCeEEEeeCC----Cc-----eeEEEEeCCCCeeEeeeC
Q 042434          281 KLLTCGNAEVLKLWDVETGICKH-TFGDHGFIVSSCAWFPDSKRLVCGSSD----TE-----KGIFMCDCDGNEIKAWRG  350 (517)
Q Consensus       281 ~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~i~~~~~~~~l~~~~~d----~~-----v~i~~~~~~~~~~~~~~~  350 (517)
                      .++.|+.  .+..||..+++-.. ................++..++.|+..    +.     ..++.+|.....-.....
T Consensus        18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~   95 (318)
T 2woz_A           18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP   95 (318)
T ss_dssp             EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred             hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence            3444443  47899998887544 121112222333345577788888731    21     127888887765544432


Q ss_pred             cCCCce-EEEEEccCCCEEEEEeCC-------CcEEEEECCCce-EEeeccCCC-eeEEEEcCCCCEEEEEeC------C
Q 042434          351 TRIPKV-LDLAVTPDGENLISVLSD-------KDIRILNLGTYA-ERVISEEHP-ITSLSVSVDCKNFIVNLN------S  414 (517)
Q Consensus       351 ~~~~~i-~~~~~~~~~~~l~~~~~d-------g~i~i~d~~~~~-~~~~~~~~~-i~~~~~s~~~~~l~~~~~------d  414 (517)
                      ...... .+++. -++..++.|+.+       ..+.+||..+.+ ........+ ....+...+++.++.|+.      .
T Consensus        96 ~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~  174 (318)
T 2woz_A           96 LPSARCLFGLGE-VDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCT  174 (318)
T ss_dssp             BSSCBCSCEEEE-ETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBC
T ss_pred             CCccccccceEE-ECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCcc
Confidence            221111 12222 256677777654       258889998876 222111111 111122246666676654      2


Q ss_pred             CeEEEEEcCCC-CccceEEeCcccCceEEEeecCCCCCcEEEEecCC-----CcEEEEecCCCceeE--EecCCCCCeeE
Q 042434          415 QEIHMWDVAGK-WEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSEN-----SQIYIWNRRNSKPIE--ILSGHSMTVNC  486 (517)
Q Consensus       415 ~~i~~~d~~~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~--~~~~h~~~v~~  486 (517)
                      ..+..||+.+. +.......   .......++  ..++++++.|+.+     ..+.+||..+.+-..  .+.........
T Consensus       175 ~~~~~yd~~~~~W~~~~~~p---~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~  249 (318)
T 2woz_A          175 NRVFIYNPKKGDWKDLAPMK---TPRSMFGVA--IHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISL  249 (318)
T ss_dssp             CCEEEEETTTTEEEEECCCS---SCCBSCEEE--EETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEE
T ss_pred             ceEEEEcCCCCEEEECCCCC---CCcccceEE--EECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEE
Confidence            35889998664 22221111   111101111  1266777777654     357789988765322  22222222222


Q ss_pred             EEecCCCCcEEEEeeCC--------------CcEEEeCCCCC
Q 042434          487 VSWNPKRPKMLASASDD--------------HTIRIWGPCQS  514 (517)
Q Consensus       487 v~~~~~~~~~l~s~~~d--------------g~v~iw~~~~~  514 (517)
                      +.+  ++ .+++.||.+              ..+.+||+.+.
T Consensus       250 ~~~--~~-~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~  288 (318)
T 2woz_A          250 VSL--AG-SLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK  288 (318)
T ss_dssp             EEE--TT-EEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred             EEE--CC-EEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence            222  34 677777754              34777887653

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.28  E-value=0.3  Score=52.90  Aligned_cols=193  Identities=9%  Similarity=-0.011  Sum_probs=101.7

Q ss_pred             cEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCC------CCeEEEEeC-CCeEEEEEC
Q 042434          224 EVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPD------DTKLLTCGN-AEVLKLWDV  296 (517)
Q Consensus       224 ~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~------~~~l~s~~~-dg~i~iwd~  296 (517)
                      .|.+.+.+.  .+++.++ ++.+.++.+..+ .+....... -...|.|+++.|.      +++++.|.. |++++|+++
T Consensus       515 ~I~~As~n~--~~vvva~-g~~l~~fel~~~-~L~~~~~~~-l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL  589 (1158)
T 3ei3_A          515 NISVASCNS--SQVVVAV-GRALYYLQIHPQ-ELRQISHTE-MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKL  589 (1158)
T ss_dssp             CCCEEEECS--SEEEEEE-TTEEEEEEEETT-EEEEEEEEE-CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEET
T ss_pred             EEEEEEeCC--CEEEEEE-CCEEEEEEeeCC-ceeeecccC-CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEEC
Confidence            455555443  3555554 577888887653 333333322 3568999999863      478999986 999999999


Q ss_pred             CCCcEEEEeCC-CCCceEEEEEe--CCCCeEEEeeCCCceeEEEEeCCCCeeE----eeeCcCCCceEEEEEccCCCEEE
Q 042434          297 ETGICKHTFGD-HGFIVSSCAWF--PDSKRLVCGSSDTEKGIFMCDCDGNEIK----AWRGTRIPKVLDLAVTPDGENLI  369 (517)
Q Consensus       297 ~~~~~~~~~~~-~~~~v~~i~~~--~~~~~l~~~~~d~~v~i~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~l~  369 (517)
                      .+.+.+....- ......++.+.  ....++.+|-.||.+.-+.+|..+..+.    ...+.  .++.-..+...+..-+
T Consensus       590 ~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~--~pv~L~~~~~~~~~~V  667 (1158)
T 3ei3_A          590 PSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGT--QPTVLRTFRSLSTTNV  667 (1158)
T ss_dssp             TTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCS--SCCEEEEEESSSCEEE
T ss_pred             CCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCC--CceEEEEEeeCCceeE
Confidence            88766654321 12234444433  2345788999999865556665433332    12222  2344334444444333


Q ss_pred             EEeCCCcEEEEECCCceEEeeccCCCee-EEEEcCC--CCEEEEEeCCCeEEEEEcCC
Q 042434          370 SVLSDKDIRILNLGTYAERVISEEHPIT-SLSVSVD--CKNFIVNLNSQEIHMWDVAG  424 (517)
Q Consensus       370 ~~~~dg~i~i~d~~~~~~~~~~~~~~i~-~~~~s~~--~~~l~~~~~d~~i~~~d~~~  424 (517)
                      .+..+....+|.-+..-.........+. ...|+..  ..-++..+ ++.+++..+..
T Consensus       668 ~a~s~rp~liy~~~~~l~~s~l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~  724 (1158)
T 3ei3_A          668 FACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDE  724 (1158)
T ss_dssp             EEESSSCEEEEESSSSEEEEEBSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECC
T ss_pred             EEECCCCEEEEEcCCceEEeccChHHhceEeccCcccCCCcEEEEc-CCceEEEEecc
Confidence            3444444444543322111111112232 2334332  23344333 45588877643

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.24  E-value=0.16  Score=48.87  Aligned_cols=153  Identities=13%  Similarity=0.131  Sum_probs=89.2

Q ss_pred             EeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEecc------CCCCEEEEEECCC---CCeEEEEeC
Q 042434          217 ILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRS------HQNPVSFVAWSPD---DTKLLTCGN  287 (517)
Q Consensus       217 ~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~------h~~~v~~l~~s~~---~~~l~s~~~  287 (517)
                      .+...-...+.++|.|+|+++++-...+.|++++..++. ...+..+..      .......|+|+|+   +..|..+..
T Consensus        21 ~~a~~l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~-~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s   99 (454)
T 1cru_A           21 VILSNLNKPHALLWGPDNQIWLTERATGKILRVNPESGS-VKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGT   99 (454)
T ss_dssp             EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCC-EEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEE
T ss_pred             EEECCCCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCc-EeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEe
Confidence            333334567899999999977775444568777654332 233333321      2456789999995   555544432


Q ss_pred             -------------CCeEEEEECCCC--c-----EEE-EeCC-CCCceEEEEEeCCCCeEEEeeCCC--------------
Q 042434          288 -------------AEVLKLWDVETG--I-----CKH-TFGD-HGFIVSSCAWFPDSKRLVCGSSDT--------------  331 (517)
Q Consensus       288 -------------dg~i~iwd~~~~--~-----~~~-~~~~-~~~~v~~i~~~~~~~~l~~~~~d~--------------  331 (517)
                                   ...|.-++...+  +     .+. .+.. .......++|.|||.++++.+..+              
T Consensus       100 ~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~~  179 (454)
T 1cru_A          100 FKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQ  179 (454)
T ss_dssp             EECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSCCCTT
T ss_pred             ccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCCCCCCccccccccccc
Confidence                         134555554322  1     111 1221 123468899999998777654321              


Q ss_pred             ----------------ceeEEEEeCCCC-----------eeEeeeCcCCCceEEEEEccCCCEEEEE
Q 042434          332 ----------------EKGIFMCDCDGN-----------EIKAWRGTRIPKVLDLAVTPDGENLISV  371 (517)
Q Consensus       332 ----------------~v~i~~~~~~~~-----------~~~~~~~~~~~~i~~~~~~~~~~~l~~~  371 (517)
                                      .-+|+.++.++.           ....+...+ .....++|+|+|.++++-
T Consensus       180 ~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~-RNp~gla~dp~G~L~~~d  245 (454)
T 1cru_A          180 HTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGH-RNPQGLAFTPNGKLLQSE  245 (454)
T ss_dssp             CCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCC-SEEEEEEECTTSCEEEEE
T ss_pred             cccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECC-CCcceEEECCCCCEEEEe
Confidence                            124888887765           223333333 367889999987755543

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.20  E-value=0.13  Score=47.17  Aligned_cols=154  Identities=15%  Similarity=0.075  Sum_probs=93.6

Q ss_pred             ccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEe----ccCCCCEEEEEECCC---CCeEEEE
Q 042434          213 ETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTL----RSHQNPVSFVAWSPD---DTKLLTC  285 (517)
Q Consensus       213 ~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~----~~h~~~v~~l~~s~~---~~~l~s~  285 (517)
                      ..+.++...-...+.++|.|+|.++++--..|.|++++...+. ...+..+    .........|+++|+   +..|...
T Consensus        22 ~~~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~-~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~  100 (347)
T 3das_A           22 KVLRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGR-KTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAY  100 (347)
T ss_dssp             EEEEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCC-EEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEE
T ss_pred             ceeEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCc-EeeecccCceeecCCCCceeeEeccccccCCEEEEE
Confidence            3455566667788999999999987776558999888754332 2223222    223567899999995   3444432


Q ss_pred             ---eCCCeEEEEECCCC----------cEE-EEeC-CCCCceEEEEEeCCCCeEEEeeC-------------CCceeEEE
Q 042434          286 ---GNAEVLKLWDVETG----------ICK-HTFG-DHGFIVSSCAWFPDSKRLVCGSS-------------DTEKGIFM  337 (517)
Q Consensus       286 ---~~dg~i~iwd~~~~----------~~~-~~~~-~~~~~v~~i~~~~~~~~l~~~~~-------------d~~v~i~~  337 (517)
                         ..++.|.-|....+          +.+ ..+. ........+.|.|||.++++.+.             .|.  |+.
T Consensus       101 yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~--IlR  178 (347)
T 3das_A          101 FTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGK--ILR  178 (347)
T ss_dssp             EECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTC--EEE
T ss_pred             EecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCE--EEE
Confidence               23456666665541          111 1222 11223456999999987777542             244  888


Q ss_pred             EeCCCC--------eeEeeeCcCCCceEEEEEccCCCEEEE
Q 042434          338 CDCDGN--------EIKAWRGTRIPKVLDLAVTPDGENLIS  370 (517)
Q Consensus       338 ~~~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~l~~  370 (517)
                      ++.++.        ....+...+ .....++|+|+|.+.++
T Consensus       179 i~~dG~ip~~nPf~~~~i~a~G~-RNp~Gla~dp~G~L~~~  218 (347)
T 3das_A          179 MTPDGEPAPGNPFPGSPVYSYGH-RNVQGLAWDDKQRLFAS  218 (347)
T ss_dssp             ECTTSSBCTTCSSTTCCEEEBCC-SBCCEEEECTTCCEEEE
T ss_pred             EeCCCCccCCCCCCCCeEEeeCC-CCcceEEECCCCCEEEE
Confidence            887764        122233222 25678999998776554

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.15  E-value=0.2  Score=48.26  Aligned_cols=105  Identities=15%  Similarity=0.164  Sum_probs=62.5

Q ss_pred             CCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEE--EEeCC------CCCceEEEEEeCC---CCeEEEeeCC------
Q 042434          268 NPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICK--HTFGD------HGFIVSSCAWFPD---SKRLVCGSSD------  330 (517)
Q Consensus       268 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~------~~~~v~~i~~~~~---~~~l~~~~~d------  330 (517)
                      ...+.|+|.|+|+++++-...+.|.+++..+++..  ..+..      .......++|+|+   +..|+++...      
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            45679999999987776544457888886656532  22321      2456779999995   5555544321      


Q ss_pred             -C----ceeEEEEeCCC--Cee----Ee---eeCcCCCceEEEEEccCCCEEEEEe
Q 042434          331 -T----EKGIFMCDCDG--NEI----KA---WRGTRIPKVLDLAVTPDGENLISVL  372 (517)
Q Consensus       331 -~----~v~i~~~~~~~--~~~----~~---~~~~~~~~i~~~~~~~~~~~l~~~~  372 (517)
                       +    .-+|+.++...  ..+    ..   +..........+.|.|||.+.++.+
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence             1    23466665432  111    11   1111123578899999999777654

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.12  E-value=0.046  Score=50.87  Aligned_cols=238  Identities=8%  Similarity=0.026  Sum_probs=116.2

Q ss_pred             CCCEEEEeeCC-CcEEEEEecC-CCeeeEEEEec-cCCCCEEEEEECCCCCeEEEEeC-C---------CeEEEEECCCC
Q 042434          233 NGEYLASSSSD-CSAIIWKVLE-DSKLTLKHTLR-SHQNPVSFVAWSPDDTKLLTCGN-A---------EVLKLWDVETG  299 (517)
Q Consensus       233 ~~~~l~t~~~d-g~i~iw~~~~-~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~~~-d---------g~i~iwd~~~~  299 (517)
                      ++.+++.|+.+ ..+.+||... ...+..+..+. .....-.++.+  ++..++.|+. +         ..+.+||+.+.
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~   96 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN   96 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence            56666666643 4577788753 23443333322 11112222233  5667777776 2         36889999887


Q ss_pred             cEEEEeCCC-CCceEEEEEeCCCCeEEEeeCCCc-------------------------------------eeEEEEeCC
Q 042434          300 ICKHTFGDH-GFIVSSCAWFPDSKRLVCGSSDTE-------------------------------------KGIFMCDCD  341 (517)
Q Consensus       300 ~~~~~~~~~-~~~v~~i~~~~~~~~l~~~~~d~~-------------------------------------v~i~~~~~~  341 (517)
                      +-...-... .......+...+++.++.|+.++.                                     -.++.+|..
T Consensus        97 ~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~  176 (357)
T 2uvk_A           97 SWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPS  176 (357)
T ss_dssp             EEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETT
T ss_pred             cEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCC
Confidence            644322111 111111122256778888876532                                     248999988


Q ss_pred             CCeeEeeeCcCCC-ce-EEEEEccCCCEEEEEeC------CCcEEEEEC--CCce-EEeecc--C-CCeeEEEEcCCCCE
Q 042434          342 GNEIKAWRGTRIP-KV-LDLAVTPDGENLISVLS------DKDIRILNL--GTYA-ERVISE--E-HPITSLSVSVDCKN  407 (517)
Q Consensus       342 ~~~~~~~~~~~~~-~i-~~~~~~~~~~~l~~~~~------dg~i~i~d~--~~~~-~~~~~~--~-~~i~~~~~s~~~~~  407 (517)
                      +..-......... .. .+++. -+++.++.|+.      ...+.+||+  .+.. ......  . ......+...+++.
T Consensus       177 ~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i  255 (357)
T 2uvk_A          177 TQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSL  255 (357)
T ss_dssp             TTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEE
T ss_pred             CCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCEE
Confidence            7654433322211 11 22332 25566666653      346778887  4444 211111  1 11122223335666


Q ss_pred             EEEEeCC----------------------CeEEEEEcCCC-CccceEEeCcccCceEEEeecCCCCCcEEEEecCCC---
Q 042434          408 FIVNLNS----------------------QEIHMWDVAGK-WEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENS---  461 (517)
Q Consensus       408 l~~~~~d----------------------~~i~~~d~~~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---  461 (517)
                      ++.|+.+                      ..+.+||+.+. +..+..+........   ++  ..++++++.|+.++   
T Consensus       256 yv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~---~~--~~~~~i~v~GG~~~~~~  330 (357)
T 2uvk_A          256 IFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGV---SL--PWNNSLLIIGGETAGGK  330 (357)
T ss_dssp             EEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSE---EE--EETTEEEEEEEECGGGC
T ss_pred             EEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccce---eE--EeCCEEEEEeeeCCCCC
Confidence            7776632                      25778998653 333322221111111   11  23677888888653   


Q ss_pred             ---cEEEEecCCCceeEEec
Q 042434          462 ---QIYIWNRRNSKPIEILS  478 (517)
Q Consensus       462 ---~i~iwd~~~~~~~~~~~  478 (517)
                         .|.++++++++.+....
T Consensus       331 ~~~~v~~l~~~~~~~~~~~~  350 (357)
T 2uvk_A          331 AVTDSVLITVKDNKVTVQNL  350 (357)
T ss_dssp             EEEEEEEEEC-CCSCEEEC-
T ss_pred             EeeeEEEEEEcCcEeEeeec
Confidence               46666888777665443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.05  E-value=0.033  Score=59.95  Aligned_cols=234  Identities=9%  Similarity=0.125  Sum_probs=130.8

Q ss_pred             CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCC
Q 042434          243 DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSK  322 (517)
Q Consensus       243 dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~  322 (517)
                      ..+|.|-|+.++...  .+.    .-.--+.-.+|..+.+|.-. ..++.|+|+++...++.+.- ..+|.-=.|-.+. 
T Consensus        47 ~~~vvIidl~~~~~~--~rr----pi~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~-  117 (1630)
T 1xi4_A           47 QAQVVIIDMNDPSNP--IRR----PISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-  117 (1630)
T ss_pred             CceEEEEECCCCCCc--ccc----cccchhhccCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCC-
Confidence            347888888765432  111    11112334577777666654 67999999999888777644 3455555666443 


Q ss_pred             eEEEeeCCCceeEEEEeCCC--CeeEeeeCcC---CCceEEEEEccCCCEEEEEeC-------CCcEEEEECCCce-EEe
Q 042434          323 RLVCGSSDTEKGIFMCDCDG--NEIKAWRGTR---IPKVLDLAVTPDGENLISVLS-------DKDIRILNLGTYA-ERV  389 (517)
Q Consensus       323 ~l~~~~~d~~v~i~~~~~~~--~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~-------dg~i~i~d~~~~~-~~~  389 (517)
                      .|+..+...   |+.|+..+  .+.+.+..+.   ...|..-..+++.++++..+-       .|.+.+|...... ...
T Consensus       118 ~l~lVT~~a---VyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~i  194 (1630)
T 1xi4_A          118 TVALVTDNA---VYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPI  194 (1630)
T ss_pred             eeEEEcCCe---EEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhh
Confidence            444444333   99999965  2333332221   246778888899998775442       4788888887665 222


Q ss_pred             eccCCCeeEEEEc--CC-CCEEEEEeC---CCeEEEEEcCCC--Cccce-------EEeCcccCceEEEeecCCCCCcEE
Q 042434          390 ISEEHPITSLSVS--VD-CKNFIVNLN---SQEIHMWDVAGK--WEKPF-------KYTGHSQNKYVIRSCFGGLDGTFI  454 (517)
Q Consensus       390 ~~~~~~i~~~~~s--~~-~~~l~~~~~---d~~i~~~d~~~~--~~~~~-------~~~~~~~~~~~i~~~~~s~~~~~l  454 (517)
                      -+|......+...  +. ...++.+..   .+.+++.++...  .....       .+.......+++... .++.-..+
T Consensus       195 egha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~-vs~k~g~i  273 (1630)
T 1xi4_A          195 EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQ-ISEKHDVV  273 (1630)
T ss_pred             hHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEE-eccccCEE
Confidence            2333222222221  11 122222222   368888888432  01111       111111223333332 35666678


Q ss_pred             EEecCCCcEEEEecCCCceeEEecCCCCCeeEEEe
Q 042434          455 ASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSW  489 (517)
Q Consensus       455 ~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~  489 (517)
                      ..-+.-|.|++||+.+|.++..-+-...+|...+.
T Consensus       274 y~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~  308 (1630)
T 1xi4_A          274 FLITKYGYIHLYDLETGTCIYMNRISGETIFVTAP  308 (1630)
T ss_pred             EEEecCceEEEEecccchhhhhccccCCceEEecc
Confidence            88889999999999999887654433444443333

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.93  E-value=0.01  Score=49.95  Aligned_cols=132  Identities=10%  Similarity=-0.007  Sum_probs=79.6

Q ss_pred             CCeEEEEeCCCeEEEEECCCCc------EEEEeCC-CCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCc
Q 042434          279 DTKLLTCGNAEVLKLWDVETGI------CKHTFGD-HGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGT  351 (517)
Q Consensus       279 ~~~l~s~~~dg~i~iwd~~~~~------~~~~~~~-~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~  351 (517)
                      ...|+....| +++.=...++.      ...++.. .=..+..++|+|+|.+.++  .+|.  ++..+..+..-..+...
T Consensus         4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~--Ly~~~~~t~~~~~W~~s   78 (236)
T 1tl2_A            4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDK--IYKGTPPTHDNDNWMGR   78 (236)
T ss_dssp             CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTE--EEEESCCCSTTCCHHHH
T ss_pred             ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCe--EEEECCCCCCccccccc
Confidence            3455565666 55544444332      1122211 1236679999999987666  6666  88888754332333222


Q ss_pred             -------CCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--E-----Eeec--cCCCeeEEEEcCCCCEEEEEeCCC
Q 042434          352 -------RIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--E-----RVIS--EEHPITSLSVSVDCKNFIVNLNSQ  415 (517)
Q Consensus       352 -------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~-----~~~~--~~~~i~~~~~s~~~~~l~~~~~d~  415 (517)
                             .-.....+.|.|+|.+.++  .||.|+-++..+..  .     ..+.  .-..+..+.+.|+|...++.  ++
T Consensus        79 ~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg  154 (236)
T 1tl2_A           79 AKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQ  154 (236)
T ss_dssp             CEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TT
T ss_pred             ccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CC
Confidence                   1112378899999988777  66999888764322  1     1111  11467999999999888877  77


Q ss_pred             eEEE
Q 042434          416 EIHM  419 (517)
Q Consensus       416 ~i~~  419 (517)
                      .++-
T Consensus       155 ~lyr  158 (236)
T 1tl2_A          155 QFYK  158 (236)
T ss_dssp             EEEE
T ss_pred             cEEe
Confidence            6543

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.90  E-value=0.25  Score=45.32  Aligned_cols=234  Identities=12%  Similarity=0.075  Sum_probs=125.2

Q ss_pred             eccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEE--EEe----CCCCCceEEEEEeCC---CCeEEEe-eCCCc
Q 042434          263 LRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICK--HTF----GDHGFIVSSCAWFPD---SKRLVCG-SSDTE  332 (517)
Q Consensus       263 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~----~~~~~~v~~i~~~~~---~~~l~~~-~~d~~  332 (517)
                      +...-...+.|+|.|||.++++--..|.|++++..+++..  ..+    .........++++|+   +..|++. +....
T Consensus        27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~  106 (347)
T 3das_A           27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD  106 (347)
T ss_dssp             EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred             eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence            3333456789999999987777655899999987666542  222    123566789999995   3444432 22222


Q ss_pred             eeEEEEeCCCC---------eeEe---eeCcCCCceEEEEEccCCCEEEEEeC-------------CCcEEEEECCCc--
Q 042434          333 KGIFMCDCDGN---------EIKA---WRGTRIPKVLDLAVTPDGENLISVLS-------------DKDIRILNLGTY--  385 (517)
Q Consensus       333 v~i~~~~~~~~---------~~~~---~~~~~~~~i~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~--  385 (517)
                      -+|..+...+.         ....   +..........+.|.|||.+.++.+.             .|.|.-++....  
T Consensus       107 ~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip  186 (347)
T 3das_A          107 NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPA  186 (347)
T ss_dssp             EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBC
T ss_pred             CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCcc
Confidence            34777765431         1111   11111124567999999987776542             356666665543  


Q ss_pred             ------e-EEeeccCCCeeEEEEcCCCCEEEEEeC-CC--eEEEEEcCC--CCc-------------cceEEeCcccCce
Q 042434          386 ------A-ERVISEEHPITSLSVSVDCKNFIVNLN-SQ--EIHMWDVAG--KWE-------------KPFKYTGHSQNKY  440 (517)
Q Consensus       386 ------~-~~~~~~~~~i~~~~~s~~~~~l~~~~~-d~--~i~~~d~~~--~~~-------------~~~~~~~~~~~~~  440 (517)
                            . ............++|+|+|..+++-.. ++  .|....--.  +|.             ....+..+...  
T Consensus       187 ~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~a--  264 (347)
T 3das_A          187 PGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEAS--  264 (347)
T ss_dssp             TTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCC--
T ss_pred             CCCCCCCCeEEeeCCCCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCC--
Confidence                  1 111222234678999998776555432 22  232221100  000             01111111001  


Q ss_pred             EEEeecCCCCCcEEEEecCCCcEEEEecCCCce----eEEecCCCCCeeEEEecCCCCcEEEEee
Q 042434          441 VIRSCFGGLDGTFIASGSENSQIYIWNRRNSKP----IEILSGHSMTVNCVSWNPKRPKMLASAS  501 (517)
Q Consensus       441 ~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~h~~~v~~v~~~~~~~~~l~s~~  501 (517)
                      ..-..+  .+|..++..-..+.|....+.....    ...+.+..+.+.+|+..||| .++++.+
T Consensus       265 p~G~~~--~~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG-~lyv~td  326 (347)
T 3das_A          265 PSGIAY--AEGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGD-KLWLVTS  326 (347)
T ss_dssp             EEEEEE--ETTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETT-EEEEEEC
T ss_pred             CcceEE--EcCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCC-cEEEEEc
Confidence            111111  1455666555566776666654432    23344445789999999999 5555543

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.90  E-value=0.052  Score=45.67  Aligned_cols=143  Identities=12%  Similarity=0.030  Sum_probs=82.8

Q ss_pred             CceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEeeccCCC--------eeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 042434          354 PKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVISEEHP--------ITSLSVSVDCKNFIVNLNSQEIHMWDVAG  424 (517)
Q Consensus       354 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~--------i~~~~~s~~~~~l~~~~~d~~i~~~d~~~  424 (517)
                      ..+..++|+|+|.+.++  .+|.++-.+..+.. .........        ...+.|.|+|.+.++  .||.|+-++-.+
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence            36789999999986666  78888877765522 111111222        378999999988888  569888887633


Q ss_pred             CCccce----EEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCc------eeEEec-CCCCCeeEEEecCCC
Q 042434          425 KWEKPF----KYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSK------PIEILS-GHSMTVNCVSWNPKR  493 (517)
Q Consensus       425 ~~~~~~----~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~-~h~~~v~~v~~~~~~  493 (517)
                      ......    ...+.. .-..+..+++.|+|.+.++.  ||.++-+...++.      ....+. ..-..-+.+.|.|++
T Consensus       117 ~~~~~Wl~~a~~vg~~-gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G  193 (236)
T 1tl2_A          117 SDTDNWIARATEVGSG-GWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVG  193 (236)
T ss_dssp             STTCCHHHHSEEEECS-SGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTS
T ss_pred             CCCCceeccccEeccC-CCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCC
Confidence            211111    111110 01125777889999877776  7776544332221      111111 223345567799998


Q ss_pred             CcEEEEeeCCCcE
Q 042434          494 PKMLASASDDHTI  506 (517)
Q Consensus       494 ~~~l~s~~~dg~v  506 (517)
                       .+.+..  +|.+
T Consensus       194 -~l~~v~--~g~~  203 (236)
T 1tl2_A          194 -TLFGVQ--GGKF  203 (236)
T ss_dssp             -CEEEEE--TTEE
T ss_pred             -cEEEEe--CCeE
Confidence             444444  7743

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.82  E-value=0.067  Score=48.90  Aligned_cols=192  Identities=8%  Similarity=-0.058  Sum_probs=100.2

Q ss_pred             CCeEEEEeCCCeEEEEECCCCcEEEEeCCC-CCceEEEEEe--C-CCCeEEEe-eCCCceeEEEEeCCCCeeEeeeCc--
Q 042434          279 DTKLLTCGNAEVLKLWDVETGICKHTFGDH-GFIVSSCAWF--P-DSKRLVCG-SSDTEKGIFMCDCDGNEIKAWRGT--  351 (517)
Q Consensus       279 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~i~~~--~-~~~~l~~~-~~d~~v~i~~~~~~~~~~~~~~~~--  351 (517)
                      +..++.++.||.|.-.|..+|+...++... ..++....-.  + ++..++.. +.||.  ++.++..+...+ +...  
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~--l~a~~~~~G~~~-~~~~~~   86 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGN--IYYFNAHQGLQK-LPLSIR   86 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTE--EEEEETTTEEEE-EEEEHH
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCE--EEEEECCCCcEE-eeeccc
Confidence            347888999999999999999999888643 1222221100  1 22333333 57888  888887654222 2111  


Q ss_pred             ---CCCceEE---EEE-----ccCCCEEEEEeCCCcEEEEECCCce-EEeeccCCCee--------EEEEc-----CCCC
Q 042434          352 ---RIPKVLD---LAV-----TPDGENLISVLSDKDIRILNLGTYA-ERVISEEHPIT--------SLSVS-----VDCK  406 (517)
Q Consensus       352 ---~~~~i~~---~~~-----~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~--------~~~~s-----~~~~  406 (517)
                         ...++..   ..+     ...+..+++|+.+|.+...|+.+++ ........+..        +....     ..+.
T Consensus        87 ~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~  166 (339)
T 2be1_A           87 QLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECEN  166 (339)
T ss_dssp             HHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CC
T ss_pred             cceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCC
Confidence               0111111   000     0145688999999999999999988 33333222110        11111     1235


Q ss_pred             EEEEEeCCCeEEEEEcCCCCccceEEeCccc---CceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeE
Q 042434          407 NFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQ---NKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIE  475 (517)
Q Consensus       407 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  475 (517)
                      .++.+..+..+.+.+ +++..-...+.....   ..........+.|+.+ +.++.||.|+-+|..+|+.+.
T Consensus       167 ~v~ig~~~y~v~~~~-~sG~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          167 MIVIGKTIFELGIHS-YDGASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             EEEEEEEEEECEECC-TTSCCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred             eEEEecceEEEEEEC-CCCCeEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence            677777666666666 332111111111100   0000000011234666 446788999999988888765

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.78  E-value=0.11  Score=48.42  Aligned_cols=139  Identities=14%  Similarity=0.168  Sum_probs=87.6

Q ss_pred             CCCeEEEEeCCCeEEEEECCCCcEEEEeCCC----CCceEEEEEeCCCCeEEEeeCCCceeEEEEeCC-CC---------
Q 042434          278 DDTKLLTCGNAEVLKLWDVETGICKHTFGDH----GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD-GN---------  343 (517)
Q Consensus       278 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~-~~---------  343 (517)
                      +|..++.+ .++.||.-++..+..-+.+...    -..|..+..+|+|++++..+..+   |.+..+. +.         
T Consensus        31 n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~---V~Vv~LP~~~~~~~~~~~~  106 (452)
T 3pbp_A           31 NGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNE---IFVMEVPWGYSNVEDVSIQ  106 (452)
T ss_dssp             TTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSE---EEEEECCTTCSCCCCHHHH
T ss_pred             CCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCe---EEEEEecCccccCcccccc
Confidence            44444443 2356666666543333333222    23578899999999999887664   4444443 11         


Q ss_pred             ---eeEeeeCc-----CCCceEEEEEccC---CCEEEEEeCCCcEEEEECCCce--EEee----------ccCCCeeEEE
Q 042434          344 ---EIKAWRGT-----RIPKVLDLAVTPD---GENLISVLSDKDIRILNLGTYA--ERVI----------SEEHPITSLS  400 (517)
Q Consensus       344 ---~~~~~~~~-----~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~--~~~~----------~~~~~i~~~~  400 (517)
                         ..+.+...     ...+|..+.|+|-   +..|++-..|+.|++||+....  ....          .....+.+++
T Consensus       107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~  186 (452)
T 3pbp_A          107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLE  186 (452)
T ss_dssp             HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEE
T ss_pred             cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEE
Confidence               11122221     2357999999995   5589999999999999998622  1111          1125688999


Q ss_pred             EcCCCCEEEEEe--CCCeEEEE
Q 042434          401 VSVDCKNFIVNL--NSQEIHMW  420 (517)
Q Consensus       401 ~s~~~~~l~~~~--~d~~i~~~  420 (517)
                      |.+++-.+.+.+  .+|.|+-.
T Consensus       187 Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          187 FSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             ECTTSSCEEEEECTTSCEEEEE
T ss_pred             EcCCCcEEEEEecCCCCCEEEE
Confidence            999887777755  77887654

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.78  E-value=0.1  Score=48.78  Aligned_cols=111  Identities=18%  Similarity=0.217  Sum_probs=74.5

Q ss_pred             ceEEEEEccCCCEEEEEeCCCcEEEEECCCce---E------------Eeec-----cCCCeeEEEEcCC---CCEEEEE
Q 042434          355 KVLDLAVTPDGENLISVLSDKDIRILNLGTYA---E------------RVIS-----EEHPITSLSVSVD---CKNFIVN  411 (517)
Q Consensus       355 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~------------~~~~-----~~~~i~~~~~s~~---~~~l~~~  411 (517)
                      .+..+..+|+|++++..+ +..|.|..+..+.   .            ....     ...+|..+.|+|-   +..+++-
T Consensus        67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL  145 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL  145 (452)
T ss_dssp             TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred             ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence            578899999999998875 4578888876321   0            0111     2467999999994   5689999


Q ss_pred             eCCCeEEEEEcCCCCccceEEe------CcccCceEEEeecCCCCCcEEEE--ecCCCcEEEE
Q 042434          412 LNSQEIHMWDVAGKWEKPFKYT------GHSQNKYVIRSCFGGLDGTFIAS--GSENSQIYIW  466 (517)
Q Consensus       412 ~~d~~i~~~d~~~~~~~~~~~~------~~~~~~~~i~~~~~s~~~~~l~~--~~~dg~i~iw  466 (517)
                      ..|+.|++||+......+..+.      +.......+.+++|+.++-.|+.  .+++|.|+-.
T Consensus       146 tsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          146 KEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             ETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             ecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            9999999999976433333222      11111233556666778776666  4488888765

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=96.77  E-value=0.19  Score=45.28  Aligned_cols=174  Identities=8%  Similarity=0.090  Sum_probs=98.3

Q ss_pred             eCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCC--------------CcEEEEECC
Q 042434          318 FPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSD--------------KDIRILNLG  383 (517)
Q Consensus       318 ~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------------g~i~i~d~~  383 (517)
                      ++++..++.....+.-.++..+.++.....+....     +--++++|.+|+-+...              ..|+..++.
T Consensus        22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~~-----~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d   96 (302)
T 3s25_A           22 CESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSNDT-----AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN   96 (302)
T ss_dssp             EEETTEEEEEEGGGTTEEEEEETTSCSCEEEEEEE-----EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred             EEeCCEEEEEeCCCCceEEEEcCCCCCCEEccCCc-----eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence            34666666654322223888888876665554322     34557888888776543              367888887


Q ss_pred             CceEEeeccCCCeeEEEEcCCCCEEEEEe----CCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecC
Q 042434          384 TYAERVISEEHPITSLSVSVDCKNFIVNL----NSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSE  459 (517)
Q Consensus       384 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~----~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  459 (517)
                      ..........   ....+++++++++...    ....|+..++.+.  ....+..+..       ..++++++.|+-.+.
T Consensus        97 g~~~~~l~~~---~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs--~~~~lt~~~~-------~~~~~~g~~iy~t~~  164 (302)
T 3s25_A           97 GHGSTVLDPD---PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGE--EKKKIKNHYL-------FTCNTSDRYFYYNNP  164 (302)
T ss_dssp             SCCCEEEECS---CEEEEEEETTEEEEEEESSSSCEEEEEEETTSC--CCEEEESSCC-------CCSEEETTEEEEECT
T ss_pred             CCcceEeecC---CccEEEEeCCEEEEEeecCCCCceEEEEECCCC--CeEEEeCCCc-------eEeeEECCEEEEEeC
Confidence            7663333222   2236788888888775    2345666666543  3334443322       223677877775554


Q ss_pred             -CCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeC-C-CcEEEeCCCC
Q 042434          460 -NSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASD-D-HTIRIWGPCQ  513 (517)
Q Consensus       460 -dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~-d-g~v~iw~~~~  513 (517)
                       ...|++.++..+.....+.   +... ..++|++. .|+-... + ..|..-++..
T Consensus       165 g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~-~iy~t~~~~~~~I~~~~ldG  216 (302)
T 3s25_A          165 KNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDT-NVYYMDVNRDNAIVHVNINN  216 (302)
T ss_dssp             TTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETT-EEEEEEGGGTTEEEEECSSS
T ss_pred             CCceEEEEECCCCCEEEEeC---CCcc-ceeeecCC-EEEEEEcCCCcEEEEEECCC
Confidence             5788888887665443333   2222 23558774 4443333 2 2444444443

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.69  E-value=0.23  Score=50.87  Aligned_cols=197  Identities=10%  Similarity=0.094  Sum_probs=107.0

Q ss_pred             CCCCeEEEEeCC----CeEEEEECCCCcEEEEe-C------CCCCceEEEEEeC-CCCeEEEeeCCCc----eeEEEEeC
Q 042434          277 PDDTKLLTCGNA----EVLKLWDVETGICKHTF-G------DHGFIVSSCAWFP-DSKRLVCGSSDTE----KGIFMCDC  340 (517)
Q Consensus       277 ~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~-~------~~~~~v~~i~~~~-~~~~l~~~~~d~~----v~i~~~~~  340 (517)
                      .++..++.||.+    ..+.+||..+++....- .      .....-.+++..+ ++..++.|+.++.    -.++.+|.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            356667777653    36888998887654332 1      1111112333333 7778888876542    23888998


Q ss_pred             CCCeeEeeeCcCCCc-eEEEEEccCCCEEEEEeCCC--cEEEEECCCceEEeec-------cCCCeeEEEEcCC-CCEEE
Q 042434          341 DGNEIKAWRGTRIPK-VLDLAVTPDGENLISVLSDK--DIRILNLGTYAERVIS-------EEHPITSLSVSVD-CKNFI  409 (517)
Q Consensus       341 ~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~-------~~~~i~~~~~s~~-~~~l~  409 (517)
                      ....-.......... -.+++...++..++.|+.++  .+.+||..+..-....       .......+.+..+ ++.++
T Consensus       476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv  555 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII  555 (695)
T ss_dssp             TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred             CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence            876544433222222 22333434788888887655  7999999887722221       1222333555555 66677


Q ss_pred             EEeC--C-----CeEEEEEcCCCCc-cc---eEEeCc-ccCceEEEeecCCCCCcEEEEecCC--------CcEEEEecC
Q 042434          410 VNLN--S-----QEIHMWDVAGKWE-KP---FKYTGH-SQNKYVIRSCFGGLDGTFIASGSEN--------SQIYIWNRR  469 (517)
Q Consensus       410 ~~~~--d-----~~i~~~d~~~~~~-~~---~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~d--------g~i~iwd~~  469 (517)
                      .|+.  +     +.+..||+.+..- ..   ...... ........++. ..++.+++.|+.+        ..+.+||..
T Consensus       556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~  634 (695)
T 2zwa_A          556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKY-ITPRKLLIVGGTSPSGLFDRTNSIISLDPL  634 (695)
T ss_dssp             ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEE-EETTEEEEECCBCSSCCCCTTTSEEEEETT
T ss_pred             ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEE-eCCCEEEEECCccCCCCCCCCCeEEEEECC
Confidence            7765  2     4688999876520 00   111110 11111111111 1237778888743        469999998


Q ss_pred             CCcee
Q 042434          470 NSKPI  474 (517)
Q Consensus       470 ~~~~~  474 (517)
                      +.+-.
T Consensus       635 t~~W~  639 (695)
T 2zwa_A          635 SETLT  639 (695)
T ss_dssp             TTEEE
T ss_pred             CCeEE
Confidence            87644

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=96.27  E-value=0.91  Score=43.97  Aligned_cols=233  Identities=12%  Similarity=0.039  Sum_probs=134.1

Q ss_pred             EEEEeeCCCcEEEEEecCCCeeeEEEEeccC----------------------CCCEE--EEEEC---CCCCeEEEEeC-
Q 042434          236 YLASSSSDCSAIIWKVLEDSKLTLKHTLRSH----------------------QNPVS--FVAWS---PDDTKLLTCGN-  287 (517)
Q Consensus       236 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h----------------------~~~v~--~l~~s---~~~~~l~s~~~-  287 (517)
                      .+.+|+..|.|+|+-+.+...+..+..|...                      .+...  .+++.   -||++|+.-.. 
T Consensus        72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdka  151 (638)
T 3sbq_A           72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKA  151 (638)
T ss_dssp             EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETT
T ss_pred             EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCC
Confidence            3667888899999988766544333332210                      11111  22332   26788888764 


Q ss_pred             CCeEEEEECCCCcEEEEeC-CCCCceEEEEEe--CCCCeEEEeeCC-------Cce---------e-EEEEeCCCCeeEe
Q 042434          288 AEVLKLWDVETGICKHTFG-DHGFIVSSCAWF--PDSKRLVCGSSD-------TEK---------G-IFMCDCDGNEIKA  347 (517)
Q Consensus       288 dg~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~--~~~~~l~~~~~d-------~~v---------~-i~~~~~~~~~~~~  347 (517)
                      +..|...++...++-+.+. .....+.++.|-  |+..++++++..       |..         . ....|..+..+ .
T Consensus       152 n~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v-~  230 (638)
T 3sbq_A          152 NSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEM-A  230 (638)
T ss_dssp             TTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSE-E
T ss_pred             CcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEE-E
Confidence            5678888998888776654 446678888886  677888887643       221         0 00112211111 1


Q ss_pred             eeCcCCCceEEEEEccCCCEEEEEeCC--------------------------------------C--cEEEEECCC---
Q 042434          348 WRGTRIPKVLDLAVTPDGENLISVLSD--------------------------------------K--DIRILNLGT---  384 (517)
Q Consensus       348 ~~~~~~~~i~~~~~~~~~~~l~~~~~d--------------------------------------g--~i~i~d~~~---  384 (517)
                      |+..-.+....+...++|.+.++.+.+                                      +  .+.+.|.+.   
T Consensus       231 ~Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~  310 (638)
T 3sbq_A          231 FQVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDG  310 (638)
T ss_dssp             EEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTT
T ss_pred             EEEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccccccc
Confidence            110001122334556677777666553                                      1  355666654   


Q ss_pred             -ce--EEeeccCCCeeEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCc--------cceEEeCc-ccCceEEEeecCCCCC
Q 042434          385 -YA--ERVISEEHPITSLSVSVDCKNFIVNLN-SQEIHMWDVAGKWE--------KPFKYTGH-SQNKYVIRSCFGGLDG  451 (517)
Q Consensus       385 -~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~-d~~i~~~d~~~~~~--------~~~~~~~~-~~~~~~i~~~~~s~~~  451 (517)
                       ..  ...+........+.++|||+++++++. +.++.++|+.....        ......+. ..+...+.. .|.++|
T Consensus       311 ~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt-~Fd~~G  389 (638)
T 3sbq_A          311 KDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHT-TFDGRG  389 (638)
T ss_dssp             BCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEE-EECSSS
T ss_pred             cCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEE-EECCCC
Confidence             22  344455566778899999999988876 77999999863100        00111111 112223333 447889


Q ss_pred             cEEEEecCCCcEEEEecCC
Q 042434          452 TFIASGSENSQIYIWNRRN  470 (517)
Q Consensus       452 ~~l~~~~~dg~i~iwd~~~  470 (517)
                      ....+---|..|..|++..
T Consensus       390 ~aYTtlfidSqvvkWni~~  408 (638)
T 3sbq_A          390 NAYTTLFIDSQVVKWNMEE  408 (638)
T ss_dssp             EEEEEETTTTEEEEEEHHH
T ss_pred             ceEeeeeecceEEEEeccH
Confidence            6666777899999999865

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=95.83  E-value=1.2  Score=41.72  Aligned_cols=181  Identities=12%  Similarity=0.016  Sum_probs=93.5

Q ss_pred             CEEEEeeCCCcEEEEEecC-CCeeeEEEEeccCCCCEEEEEECC-CCCeEEEEeCCC----eEEEEECCCCcEEEEeCC-
Q 042434          235 EYLASSSSDCSAIIWKVLE-DSKLTLKHTLRSHQNPVSFVAWSP-DDTKLLTCGNAE----VLKLWDVETGICKHTFGD-  307 (517)
Q Consensus       235 ~~l~t~~~dg~i~iw~~~~-~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~-  307 (517)
                      ..|..|+..| +.+++... +..+...... .....|.+|++.| +...|.+++..|    .|...+ ..|+.-..+.. 
T Consensus        23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~-~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~   99 (394)
T 3b7f_A           23 VMLLVATIKG-AWFLASDPARRTWELRGPV-FLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRP   99 (394)
T ss_dssp             CEEEEEETTE-EEEEEECTTSCSEEEEEEE-STTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBC
T ss_pred             CEEEEEecCc-eEEEECCCCCCCceECCcc-CCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCcc
Confidence            3566777766 55555432 2344433221 2346799999998 334454454444    343332 23332222211 


Q ss_pred             -------------CCCceEEEEEeCC--CCeEEEeeCCCceeEEEEeCCCCeeEeeeC------------------cCCC
Q 042434          308 -------------HGFIVSSCAWFPD--SKRLVCGSSDTEKGIFMCDCDGNEIKAWRG------------------TRIP  354 (517)
Q Consensus       308 -------------~~~~v~~i~~~~~--~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~------------------~~~~  354 (517)
                                   ....|.++++.|.  ...+.+++..+.  |+..+-.+..-.....                  ....
T Consensus       100 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~gg--l~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~  177 (394)
T 3b7f_A          100 PAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQG--LFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGP  177 (394)
T ss_dssp             CCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTE--EEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCC
T ss_pred             ccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCc--EEEEcCCCCCeEECcCccCCccccccccccccCCCCCC
Confidence                         1125778888872  456666666555  7776665554333321                  1123


Q ss_pred             ceEEEEEccC-CCEEEEEeCCCcEEEEECCCce-EEeec-c------------CCCeeEEEEcCC-CCEEEEEeCCCeEE
Q 042434          355 KVLDLAVTPD-GENLISVLSDKDIRILNLGTYA-ERVIS-E------------EHPITSLSVSVD-CKNFIVNLNSQEIH  418 (517)
Q Consensus       355 ~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~-~~~~~-~------------~~~i~~~~~s~~-~~~l~~~~~d~~i~  418 (517)
                      .+.++.+.|. ...++++..++.|...+-.... ..... .            ...+.++.++|. ...+++++..+ |.
T Consensus       178 ~i~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~  256 (394)
T 3b7f_A          178 KMHSILVDPRDPKHLYIGMSSGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IY  256 (394)
T ss_dssp             EEEEEEECTTCTTCEEEEEETBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EE
T ss_pred             ceeEEEECCCCCCEEEEEECCCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EE
Confidence            5788999884 4455555555545444322222 11111 0            124788999985 46666666544 44


Q ss_pred             EEE
Q 042434          419 MWD  421 (517)
Q Consensus       419 ~~d  421 (517)
                      ..+
T Consensus       257 ~s~  259 (394)
T 3b7f_A          257 RMD  259 (394)
T ss_dssp             EEE
T ss_pred             EeC
Confidence            443

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=95.80  E-value=2.1  Score=44.21  Aligned_cols=273  Identities=9%  Similarity=-0.001  Sum_probs=148.8

Q ss_pred             cCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEecc----CCCCEEEEEECCCCCeEEEEeCCCeEEEEECC
Q 042434          222 KNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRS----HQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVE  297 (517)
Q Consensus       222 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~----h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~  297 (517)
                      ...|.++...++|.+.+ |+.+| +..++..++ .+.... ...    ....|.++...+++..|..|+. +-+..+|..
T Consensus       145 ~~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~-~~~~~~-~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~  219 (758)
T 3ott_A          145 NNTIYSIIRTKDNQIYV-GTYNG-LCRYIPSNG-KFEGIP-LPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPS  219 (758)
T ss_dssp             CSCEEEEEECTTCCEEE-EETTE-EEEEETTTT-EEEEEC-CCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETT
T ss_pred             CCeEEEEEEcCCCCEEE-EeCCC-HhhCccCCC-ceEEec-CCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCC
Confidence            35688888888887554 44544 667776433 221111 111    1234888888777765555554 458889987


Q ss_pred             CCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeC-------cCCCceEEEEEccCCCEEEE
Q 042434          298 TGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRG-------TRIPKVLDLAVTPDGENLIS  370 (517)
Q Consensus       298 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~  370 (517)
                      +++...........|.++...++|.+.+ |+.+|   ++.++..+.....+..       .....|.++....+|... +
T Consensus       220 ~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~G---l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-i  294 (758)
T 3ott_A          220 TGQIKQTEAFHNNSIKSLALDGNGDLLA-GTDNG---LYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIW-L  294 (758)
T ss_dssp             TTEEEEEEEEEEEEEEEEEECTTCCEEE-EETTE---EEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEE-E
T ss_pred             CCeEEeccCCCCCeEEEEEEcCCCCEEE-EeCCc---eeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEE-E
Confidence            7654322111234578887777776554 44555   7888877655544321       122358888888777644 4


Q ss_pred             EeCCCcEEEEECCCceEEee-------ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc-cceEEeCc----ccC
Q 042434          371 VLSDKDIRILNLGTYAERVI-------SEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWE-KPFKYTGH----SQN  438 (517)
Q Consensus       371 ~~~dg~i~i~d~~~~~~~~~-------~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~-~~~~~~~~----~~~  438 (517)
                      |+..| +.++.....-....       .....|.++....+|... +|+.+ .+..++..++.. ....+...    ...
T Consensus       295 GT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lW-iGt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~l~  371 (758)
T 3ott_A          295 GTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYW-FGGAN-GLIRFTDPAGERHDAIWYRMGDKTYPLS  371 (758)
T ss_dssp             EESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEE-EEETT-EEEEESCTTSSCCCCEEECTTCSSSCCS
T ss_pred             EeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEE-EeeCC-cceeecccccccceeEEeccCCcCCCCC
Confidence            55556 55443322111110       123457888877777654 44544 466676543211 11112110    011


Q ss_pred             ceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEec-C-----CCCCeeEEEecCCCCcEEEEeeCCCcEEEeCC
Q 042434          439 KYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILS-G-----HSMTVNCVSWNPKRPKMLASASDDHTIRIWGP  511 (517)
Q Consensus       439 ~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~-----h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~  511 (517)
                      ...+.++.-..+|++- .|+ ++-|..||..+++...... .     ....|.++.-.+++  .|..|+..+-|.+++.
T Consensus       372 ~~~v~~i~~d~~g~lW-igt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g--~lWigT~~~Gl~~~~~  446 (758)
T 3ott_A          372 HNRIRHIYEDKEQQLW-IAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAG--QLWISTCLGGIFVVDK  446 (758)
T ss_dssp             CSCEEEEEECTTSCEE-EEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTS--EEEEEESSSCEEEEEH
T ss_pred             CCceEEEEECCCCCEE-EEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCC--CEEEEECCCceEEEcc
Confidence            1124444445666544 455 3569999988776433211 1     13468888887777  3555666555666653

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=95.48  E-value=1.7  Score=40.81  Aligned_cols=233  Identities=11%  Similarity=0.137  Sum_probs=133.6

Q ss_pred             EEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCC-CcEEEEe
Q 042434          227 FVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVET-GICKHTF  305 (517)
Q Consensus       227 ~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~  305 (517)
                      +.-.+|..+.+|.-. ..++.|+|+++..++   +.+.. ...|..=.|-.+. .|+..+ +..|.-|++.. ..+.+.|
T Consensus        70 sAIMnP~~~iiALra-g~~lQiFnle~K~kl---ks~~~-~e~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~P~kvF  142 (494)
T 1bpo_A           70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKM---KAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMF  142 (494)
T ss_dssp             EEEECSSSSCEEEEE-TTEEEEEETTTTEEE---EEEEC-SSCCCEEEEEETT-EEEEEC-SSEEEEEESSSSCCCEEEE
T ss_pred             eeeeCCCCcEEEEec-CCeEEEEchHHhhhh---cceec-CCCceEEEecCCC-eEEEEc-CCeeEEecccCCCCchhhe
Confidence            455788888888765 679999999766443   33333 3456666776443 444433 45899999964 3566667


Q ss_pred             CCC----CCceEEEEEeCCCCeEEEeeC---CCce--eEEEEeCCCCeeEeeeCcCCCceEEEEEccCC---CEEEEEeC
Q 042434          306 GDH----GFIVSSCAWFPDSKRLVCGSS---DTEK--GIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDG---ENLISVLS  373 (517)
Q Consensus       306 ~~~----~~~v~~i~~~~~~~~l~~~~~---d~~v--~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~  373 (517)
                      ..|    ...|..-..+++.++++..+-   ++.+  .+-+|..+.+....+.++. .....+.+..+.   ..++.+..
T Consensus       143 dR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGha-a~F~~~~~~g~~~~~~lf~fa~r  221 (494)
T 1bpo_A          143 DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHA-ASFAQFKMEGNAEESTLFCFAVR  221 (494)
T ss_dssp             ECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSE-EEEEEEECTTCSSEEEEEEEEEC
T ss_pred             ecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheeee-eeeEEEecCCCCCCceEEEEEEe
Confidence            654    566777888888888775432   3321  1556666655544444433 122222221111   13333333


Q ss_pred             ---CCcEEEEECCCc---e--------EEeec---cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcc
Q 042434          374 ---DKDIRILNLGTY---A--------ERVIS---EEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHS  436 (517)
Q Consensus       374 ---dg~i~i~d~~~~---~--------~~~~~---~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~  436 (517)
                         .+.++|.++...   .        ...+.   ...-..++.+++....+..-+.-|.+++||+.++ ..+..-.-..
T Consensus       222 ~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTg-t~i~~nrIs~  300 (494)
T 1bpo_A          222 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG-TCIYMNRISG  300 (494)
T ss_dssp             STTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC-CEEEEEECCS
T ss_pred             cCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccc-eeeeeecccC
Confidence               378999998543   0        01111   1234567888888899999999999999999887 4444333222


Q ss_pred             cCceEEEeecCCCCCcEEEEecCCCcEEEEecCCC
Q 042434          437 QNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS  471 (517)
Q Consensus       437 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  471 (517)
                      ...+.  .+. .....-+++....|.|.--.+...
T Consensus       301 ~~iF~--t~~-~~~~~Gi~~Vnr~GqVl~v~v~e~  332 (494)
T 1bpo_A          301 ETIFV--TAP-HEATAGIIGVNRKGQVLSVCVEEE  332 (494)
T ss_dssp             SCEEE--EEE-ETTTTEEEEEETTCEEEEEEECTT
T ss_pred             CceEE--ecc-cCCCCcEEEEccCceEEEEEEccc
Confidence            22221  111 122223444445666555554443

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=95.45  E-value=0.64  Score=47.55  Aligned_cols=194  Identities=13%  Similarity=0.064  Sum_probs=99.3

Q ss_pred             CCCCeEEEeeCCC--ceeEEEEeCCCCeeEeee-C------cCCCceEEEEEcc-CCCEEEEEeCC------CcEEEEEC
Q 042434          319 PDSKRLVCGSSDT--EKGIFMCDCDGNEIKAWR-G------TRIPKVLDLAVTP-DGENLISVLSD------KDIRILNL  382 (517)
Q Consensus       319 ~~~~~l~~~~~d~--~v~i~~~~~~~~~~~~~~-~------~~~~~i~~~~~~~-~~~~l~~~~~d------g~i~i~d~  382 (517)
                      .++..++.|+.++  .-.++.+|.....-.... .      .....-.+++..+ ++..++.|+.+      ..+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            4566667776532  112788887765544433 1      1111123344443 77777777754      35889999


Q ss_pred             CCceEEee---ccCCCeeEEEEcCCCCEEEEEeCCC--eEEEEEcCCC-CccceEEeCcccCceEEEeecCCCC-CcEEE
Q 042434          383 GTYAERVI---SEEHPITSLSVSVDCKNFIVNLNSQ--EIHMWDVAGK-WEKPFKYTGHSQNKYVIRSCFGGLD-GTFIA  455 (517)
Q Consensus       383 ~~~~~~~~---~~~~~i~~~~~s~~~~~l~~~~~d~--~i~~~d~~~~-~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~  455 (517)
                      .+..-...   .....-.+++...+++.++.|+.++  .+.+||..+. |.................++.+..+ +++++
T Consensus       476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv  555 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII  555 (695)
T ss_dssp             TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred             CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence            88662211   1111223344434788888887654  6899998654 2211110001111111111111223 67777


Q ss_pred             EecC--C-----CcEEEEecCCCc------e--eEEec-CCCCCeeEEEecCCCCcEEEEeeCC--------CcEEEeCC
Q 042434          456 SGSE--N-----SQIYIWNRRNSK------P--IEILS-GHSMTVNCVSWNPKRPKMLASASDD--------HTIRIWGP  511 (517)
Q Consensus       456 ~~~~--d-----g~i~iwd~~~~~------~--~~~~~-~h~~~v~~v~~~~~~~~~l~s~~~d--------g~v~iw~~  511 (517)
                      .|+.  +     ..+.+||+.+.+      .  +.... ........ +...++ .+++.||.+        ..|.+||+
T Consensus       556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~-~~~~~~-~iyv~GG~~~~~~~~~~~~v~~yd~  633 (695)
T 2zwa_A          556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQI-KYITPR-KLLIVGGTSPSGLFDRTNSIISLDP  633 (695)
T ss_dssp             ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEE-EEEETT-EEEEECCBCSSCCCCTTTSEEEEET
T ss_pred             ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceE-EEeCCC-EEEEECCccCCCCCCCCCeEEEEEC
Confidence            7776  2     358999988776      1  11111 11112222 333335 678888743        45888888


Q ss_pred             CCC
Q 042434          512 CQS  514 (517)
Q Consensus       512 ~~~  514 (517)
                      .+.
T Consensus       634 ~t~  636 (695)
T 2zwa_A          634 LSE  636 (695)
T ss_dssp             TTT
T ss_pred             CCC
Confidence            754

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=95.11  E-value=1.7  Score=38.62  Aligned_cols=221  Identities=11%  Similarity=0.028  Sum_probs=109.4

Q ss_pred             CEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCC-eeEe
Q 042434          269 PVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGN-EIKA  347 (517)
Q Consensus       269 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~-~~~~  347 (517)
                      .|..++....  ..+... ||.|..|-....-.+..-......|..++...+. .++. . ||.  +|.|-.... ++-.
T Consensus        25 ~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~--v~~wG~n~~Gqlg~   96 (282)
T 3qhy_B           25 GVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGE--VIAWGGNEDGQTTV   96 (282)
T ss_dssp             SCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTE--EEEEECCTTSTTCC
T ss_pred             CCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCE--EEEeeCCCCCCCCC
Confidence            5666666533  222234 8999999754321111000112356666665332 3333 4 787  888876521 1111


Q ss_pred             eeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 042434          348 WRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK  425 (517)
Q Consensus       348 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~  425 (517)
                       .......|..++...+  ..+... +|.|+.|-....-  .........+..++...+  +.++-. +|.++.|-....
T Consensus        97 -P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~~  169 (282)
T 3qhy_B           97 -PAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVY--TALAVK-NGGVIAWGDNYF  169 (282)
T ss_dssp             -CGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEEE-TTEEEEEECCTT
T ss_pred             -CcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccC--EEEEEE-CCEEEEecCCCC
Confidence             1111135666665544  344445 9999999765432  111122345666655443  333333 799999976543


Q ss_pred             CccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCc
Q 042434          426 WEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHT  505 (517)
Q Consensus       426 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~  505 (517)
                      ....... ........+.+   . ....++.  .||.|+.|-....-.+..-......|..|+.....  .++..  ||.
T Consensus       170 gqlg~p~-~~~~~v~~i~~---G-~~hs~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h--~~al~--~g~  238 (282)
T 3qhy_B          170 GQTTVPA-EAQSGVDDVAG---G-IFHSLAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWY--SLALK--NGK  238 (282)
T ss_dssp             STTSCCG-GGGSSEEEEEE---C-SSEEEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSC--EEEEE--TTE
T ss_pred             CCCCCce-ecCCCeEEEEe---c-CCEEEEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCE--EEEEE--CCE
Confidence            2221110 01112222222   2 2233444  59999999754422111111112457788776554  33333  999


Q ss_pred             EEEeCCCCCC
Q 042434          506 IRIWGPCQSS  515 (517)
Q Consensus       506 v~iw~~~~~~  515 (517)
                      |..|--....
T Consensus       239 v~~wG~n~~g  248 (282)
T 3qhy_B          239 VIAWGSSRTA  248 (282)
T ss_dssp             EEEESTTCCC
T ss_pred             EEEecCCCCc
Confidence            9999876543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=94.95  E-value=1.7  Score=47.43  Aligned_cols=217  Identities=10%  Similarity=0.026  Sum_probs=122.5

Q ss_pred             CCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCe-eEeeeCcCCCceEEEEEccCCC
Q 042434          288 AEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNE-IKAWRGTRIPKVLDLAVTPDGE  366 (517)
Q Consensus       288 dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~  366 (517)
                      ..+|.|.|+.++..+.+..   -..-+.-.+|..+.++.-. ..+  +-++++..+. ++......  .|.--.|-.+..
T Consensus        47 ~~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~--lQiFnl~~k~klks~~~~e--~VvfWkWis~~~  118 (1630)
T 1xi4_A           47 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKT--LQIFNIEMKSKMKAHTMTD--DVTFWKWISLNT  118 (1630)
T ss_pred             CceEEEEECCCCCCccccc---ccchhhccCCCcceEEEec-CCe--EEEeehHHhhhhcccccCC--CceEEEecCCCe
Confidence            3378888888765432211   1112344577777666654 445  6666665432 23222222  466666654443


Q ss_pred             EEEEEeCCCcEEEEECCCce--E-----EeeccCCCeeEEEEcCCCCEEEEEe-------CCCeEEEEEcCCCCccceEE
Q 042434          367 NLISVLSDKDIRILNLGTYA--E-----RVISEEHPITSLSVSVDCKNFIVNL-------NSQEIHMWDVAGKWEKPFKY  432 (517)
Q Consensus       367 ~l~~~~~dg~i~i~d~~~~~--~-----~~~~~~~~i~~~~~s~~~~~l~~~~-------~d~~i~~~d~~~~~~~~~~~  432 (517)
                      . +.. .+..|+-|++....  .     ........|.....+++.++++..+       ..|.+.+|....+  ..+.+
T Consensus       119 l-~lV-T~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~--~sQ~i  194 (1630)
T 1xi4_A          119 V-ALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK--VSQPI  194 (1630)
T ss_pred             e-EEE-cCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc--cchhh
Confidence            3 222 34569999996532  1     1111245678888899999977554       2478899998653  44556


Q ss_pred             eCcccCceEEEeecCCCCCcEEEEecC---CCcEEEEecCCC---ceeE------EecC---CCCCeeEEEecCCCCcEE
Q 042434          433 TGHSQNKYVIRSCFGGLDGTFIASGSE---NSQIYIWNRRNS---KPIE------ILSG---HSMTVNCVSWNPKRPKML  497 (517)
Q Consensus       433 ~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~iwd~~~~---~~~~------~~~~---h~~~v~~v~~~~~~~~~l  497 (517)
                      .||...-..+..-...+....++.+..   .+.++|.++...   .+..      .+..   ..+-..++..++.. .++
T Consensus       195 egha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~-g~i  273 (1630)
T 1xi4_A          195 EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH-DVV  273 (1630)
T ss_pred             hHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEecccc-CEE
Confidence            666554332222221222233333222   378999887543   1111      1111   12334567777776 588


Q ss_pred             EEeeCCCcEEEeCCCCCCCC
Q 042434          498 ASASDDHTIRIWGPCQSSEV  517 (517)
Q Consensus       498 ~s~~~dg~v~iw~~~~~~~v  517 (517)
                      ...+.-|.|.++|+.++..+
T Consensus       274 y~itk~G~~~~~d~~t~~~i  293 (1630)
T 1xi4_A          274 FLITKYGYIHLYDLETGTCI  293 (1630)
T ss_pred             EEEecCceEEEEecccchhh
Confidence            88899999999999998753

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=94.54  E-value=2.4  Score=37.63  Aligned_cols=238  Identities=12%  Similarity=0.047  Sum_probs=117.4

Q ss_pred             cEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEE
Q 042434          224 EVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKH  303 (517)
Q Consensus       224 ~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~  303 (517)
                      .|..++....- .++. . ||.|..|-.....++...   ......|..++...+.. ++. . ||.|..|-....-.+.
T Consensus        25 ~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~p---~~~~~~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gqlg   95 (282)
T 3qhy_B           25 GVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTMP---AATQSGVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQTT   95 (282)
T ss_dssp             SCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSCC---GGGGSCCCEEEECSSEE-EEE-E-TTEEEEEECCTTSTTC
T ss_pred             CCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCCC---ccCCCCEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCCCC
Confidence            45555554432 2333 4 888988876543322110   11123566777654432 233 4 8999999754321111


Q ss_pred             EeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCC-eeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEEC
Q 042434          304 TFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGN-EIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL  382 (517)
Q Consensus       304 ~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  382 (517)
                      .-..-...|..++...+  ..+.-. +|.  +|.|-.... ++. ........|..++.....  .+.-. ||.++.|-.
T Consensus        96 ~P~~~~~~v~~ia~G~~--hs~al~-~G~--v~~wG~n~~gqlg-~~~~~~~~i~~i~~G~~~--~~~l~-~G~v~~wG~  166 (282)
T 3qhy_B           96 VPAEARSGVDAIAAGAW--ASYALK-DGK--VIAWGDDSDGQTT-VPAEAQSGVTALDGGVYT--ALAVK-NGGVIAWGD  166 (282)
T ss_dssp             CCGGGSSSEEEEEEETT--EEEEEE-TTE--EEEEECCTTSTTS-CCGGGGSSEEEEEECSSE--EEEEE-TTEEEEEEC
T ss_pred             CCcccCCCeEEEECcCC--EEEEEe-CCe--EEEecCCCCCcCC-CCccCCCCeEEEEcccCE--EEEEE-CCEEEEecC
Confidence            00011346777776644  333334 887  888876531 111 111122356666654433  33334 799999976


Q ss_pred             CCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCC
Q 042434          383 GTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSEN  460 (517)
Q Consensus       383 ~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  460 (517)
                      ....  .........+..++...+  +.++- .+|.++.|-.....+.-.... .......+.+   ..+ ..++. . |
T Consensus       167 n~~gqlg~p~~~~~~v~~i~~G~~--hs~al-~~G~v~~wG~n~~gqlg~p~~-~~~~v~~i~~---G~~-h~~al-~-~  236 (282)
T 3qhy_B          167 NYFGQTTVPAEAQSGVDDVAGGIF--HSLAL-KDGKVIAWGDNRYKQTTVPTE-ALSGVSAIAS---GEW-YSLAL-K-N  236 (282)
T ss_dssp             CTTSTTSCCGGGGSSEEEEEECSS--EEEEE-ETTEEEEEECCTTSTTCCCGG-GGSSCCEEEE---CSS-CEEEE-E-T
T ss_pred             CCCCCCCCceecCCCeEEEEecCC--EEEEE-ECCeEEEEECCCCCCCCCCcc-cCCCceEEEc---CCC-EEEEE-E-C
Confidence            5432  111112345666665544  32333 599999997654322211111 1112222322   222 23333 3 9


Q ss_pred             CcEEEEecCCCceeEEecCCCCCeeEEEecCCC
Q 042434          461 SQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKR  493 (517)
Q Consensus       461 g~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~  493 (517)
                      |.|+.|-.....++..    ...|.+|+-....
T Consensus       237 g~v~~wG~n~~gq~~v----~~~v~~iaaG~~h  265 (282)
T 3qhy_B          237 GKVIAWGSSRTAPSSV----QSGVSSIEAGPNA  265 (282)
T ss_dssp             TEEEEESTTCCCCGGG----SSCEEEEEECSSC
T ss_pred             CEEEEecCCCCccccC----CCCcEEEEECcCe
Confidence            9999997655433322    2357777776654

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=94.38  E-value=3.8  Score=39.31  Aligned_cols=122  Identities=9%  Similarity=0.001  Sum_probs=69.1

Q ss_pred             ccCcEEEEEECCCCC-EEEEeeCCCcEEEEEecCCCeeeEEEEec---------cCCCCEEEEEECCC----CCeEEEEe
Q 042434          221 HKNEVWFVQFSNNGE-YLASSSSDCSAIIWKVLEDSKLTLKHTLR---------SHQNPVSFVAWSPD----DTKLLTCG  286 (517)
Q Consensus       221 h~~~v~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~---------~h~~~v~~l~~s~~----~~~l~s~~  286 (517)
                      --...+.++|.|+|. .|+.+...|.|++++.........+..+.         ........|+|+|+    +.+.++-+
T Consensus        12 gL~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt   91 (463)
T 2wg3_C           12 GLRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYT   91 (463)
T ss_dssp             EESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEE
T ss_pred             CCCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEe
Confidence            345678999999996 34445678999998643221111111111         12457889999996    43333332


Q ss_pred             C--C----------CeEEEEECCC----------CcEEEEeC--CCCCceEEEEEeCCCCeEEEeeCCCc----------
Q 042434          287 N--A----------EVLKLWDVET----------GICKHTFG--DHGFIVSSCAWFPDSKRLVCGSSDTE----------  332 (517)
Q Consensus       287 ~--d----------g~i~iwd~~~----------~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~d~~----------  332 (517)
                      .  +          ..|.-|.+..          .+.+..+.  ........|+|.|||.+.++.+..+.          
T Consensus        92 ~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~  171 (463)
T 2wg3_C           92 TNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDG  171 (463)
T ss_dssp             ECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTT
T ss_pred             CCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccC
Confidence            2  1          1344465542          12222222  22334578999999987777654331          


Q ss_pred             -----eeEEEEeCCC
Q 042434          333 -----KGIFMCDCDG  342 (517)
Q Consensus       333 -----v~i~~~~~~~  342 (517)
                           -+|+.++.++
T Consensus       172 ~~~~~GkIlRi~~dg  186 (463)
T 2wg3_C          172 LSDFTGSVLRLDVDT  186 (463)
T ss_dssp             CCSCTTEEEEEBCCC
T ss_pred             cCCCCeeEEEEECCC
Confidence                 2377777776

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=93.73  E-value=6.8  Score=39.91  Aligned_cols=238  Identities=11%  Similarity=0.079  Sum_probs=121.9

Q ss_pred             EEEE-ECCCCCeEEEE-eCCC----eEEEEECCCCcEEE-EeC-CCCC------ceEEEEEeCCCCeEEEeeCC------
Q 042434          271 SFVA-WSPDDTKLLTC-GNAE----VLKLWDVETGICKH-TFG-DHGF------IVSSCAWFPDSKRLVCGSSD------  330 (517)
Q Consensus       271 ~~l~-~s~~~~~l~s~-~~dg----~i~iwd~~~~~~~~-~~~-~~~~------~v~~i~~~~~~~~l~~~~~d------  330 (517)
                      ..+. ++|++++++.+ |..|    .++++|+.+++.+. .+. ..+.      ....++|.. ...++.+...      
T Consensus       132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d-~~~~~~~~~~~~~~~~  210 (711)
T 4hvt_A          132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWIN-KDTIIFNLVLHKNEIT  210 (711)
T ss_dssp             EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEE-TTEEEECCCCSTTCBC
T ss_pred             eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEEC-CCEEEEEeCCCCCCcC
Confidence            3344 78898877654 3333    79999999997653 121 0001      113458874 4444443211      


Q ss_pred             --C-ceeEEEEeCCCC---eeEeeeCcCCCceEEEEEccCCCE-----EEEEeC---CCcEEEEECCC--ceEEeeccCC
Q 042434          331 --T-EKGIFMCDCDGN---EIKAWRGTRIPKVLDLAVTPDGEN-----LISVLS---DKDIRILNLGT--YAERVISEEH  394 (517)
Q Consensus       331 --~-~v~i~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~-----l~~~~~---dg~i~i~d~~~--~~~~~~~~~~  394 (517)
                        + .-+++.|...+.   ....+.............++++++     +++.+.   ...+.+.|...  +.........
T Consensus       211 ~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  290 (711)
T 4hvt_A          211 SSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPS  290 (711)
T ss_dssp             TTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCT
T ss_pred             cCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCC
Confidence              1 134888877643   223344333333345556677662     343332   24566667653  2212222121


Q ss_pred             CeeEEEEcCCCCEEEEE----------eCCCeEEEEEcCCCC------ccceEEeCcccCceEEEeecCCCCCcEEEEec
Q 042434          395 PITSLSVSVDCKNFIVN----------LNSQEIHMWDVAGKW------EKPFKYTGHSQNKYVIRSCFGGLDGTFIASGS  458 (517)
Q Consensus       395 ~i~~~~~s~~~~~l~~~----------~~d~~i~~~d~~~~~------~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  458 (517)
                      . ..+..+.++..++..          ...+.|...|+.+..      .....+..+.. ...+..+.+..+ .++++..
T Consensus       291 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~-~l~~~~~  367 (711)
T 4hvt_A          291 D-ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTA-NEVFNFISTTKD-RVFLATY  367 (711)
T ss_dssp             T-CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCT-TEEEEEEEECSS-CEEEEEE
T ss_pred             c-ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCC-CCeEEEEEEECC-EEEEEEE
Confidence            1 122334455444432          135678888886531      12222222322 223444444444 5777777


Q ss_pred             CCC--cEEEEecCCCc-eeEE-ecCC-CCCeeEEEecCCCCcEEEEeeCC---CcEEEeCCC
Q 042434          459 ENS--QIYIWNRRNSK-PIEI-LSGH-SMTVNCVSWNPKRPKMLASASDD---HTIRIWGPC  512 (517)
Q Consensus       459 ~dg--~i~iwd~~~~~-~~~~-~~~h-~~~v~~v~~~~~~~~~l~s~~~d---g~v~iw~~~  512 (517)
                      .++  .|+++|+.+++ .... +... .+.+......+++..++++.+..   +.+..+++.
T Consensus       368 ~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~  429 (711)
T 4hvt_A          368 DNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT  429 (711)
T ss_dssp             ETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred             ECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence            776  47788877664 2333 2222 35677777777776666666543   567777765

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=93.39  E-value=6.2  Score=38.37  Aligned_cols=229  Identities=9%  Similarity=0.067  Sum_probs=128.6

Q ss_pred             EEEEeCCCeEEEEECCCCcEEEEeCCCC-------------------------Cc--eEEEEEeC---CCCeEEEeeCCC
Q 042434          282 LLTCGNAEVLKLWDVETGICKHTFGDHG-------------------------FI--VSSCAWFP---DSKRLVCGSSDT  331 (517)
Q Consensus       282 l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------------------------~~--v~~i~~~~---~~~~l~~~~~d~  331 (517)
                      +.||+..|.|+|+-+.+++.+..+....                         +.  -..+++..   ||++++.-...+
T Consensus        73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan  152 (638)
T 3sbq_A           73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN  152 (638)
T ss_dssp             EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence            5688899999999999998887653110                         00  11233322   566777766543


Q ss_pred             ceeEEEEeCCCCee-EeeeCcCCCceEEEEEc--cCCCEEEEEeC-------CCcE------------EEEECCCce-EE
Q 042434          332 EKGIFMCDCDGNEI-KAWRGTRIPKVLDLAVT--PDGENLISVLS-------DKDI------------RILNLGTYA-ER  388 (517)
Q Consensus       332 ~v~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~--~~~~~l~~~~~-------dg~i------------~i~d~~~~~-~~  388 (517)
                      . ++-..+++.-.. +.........+..+.+-  |+..+++.++.       ||..            ...|..+.+ ..
T Consensus       153 ~-RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~  231 (638)
T 3sbq_A          153 S-RVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAF  231 (638)
T ss_dssp             T-EEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEE
T ss_pred             c-ceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEE
Confidence            2 477777775333 23334444578888886  67778887765       2221            112333322 11


Q ss_pred             eeccCCCeeEEEEcCCCCEEEEEeCCC---------------eEEEEEcCC--------CCc-----cceEEeCcc----
Q 042434          389 VISEEHPITSLSVSVDCKNFIVNLNSQ---------------EIHMWDVAG--------KWE-----KPFKYTGHS----  436 (517)
Q Consensus       389 ~~~~~~~i~~~~~s~~~~~l~~~~~d~---------------~i~~~d~~~--------~~~-----~~~~~~~~~----  436 (517)
                      ...-......+...+++++.++.+.+.               .+.++++..        ...     .+..+.+..    
T Consensus       232 Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~~  311 (638)
T 3sbq_A          232 QVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDGK  311 (638)
T ss_dssp             EEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTTB
T ss_pred             EEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcccccccc
Confidence            111223444455677888877665432               255555421        000     111222211    


Q ss_pred             c-C-ceE------EEeecCCCCCcEEEEec-CCCcEEEEecCCC------ce-------eEEecCCCCCeeEEEecCCCC
Q 042434          437 Q-N-KYV------IRSCFGGLDGTFIASGS-ENSQIYIWNRRNS------KP-------IEILSGHSMTVNCVSWNPKRP  494 (517)
Q Consensus       437 ~-~-~~~------i~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~------~~-------~~~~~~h~~~v~~v~~~~~~~  494 (517)
                      . . ...      ...+-.+|||+++++++ -+.++.++|++.-      +.       ..... -.-.....+|.++| 
T Consensus       312 ~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G-  389 (638)
T 3sbq_A          312 DSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRG-  389 (638)
T ss_dssp             CCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSS-
T ss_pred             CCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCC-
Confidence            0 0 000      11223378999988765 4678999998742      11       22222 23456788999999 


Q ss_pred             cEEEEeeCCCcEEEeCCCC
Q 042434          495 KMLASASDDHTIRIWGPCQ  513 (517)
Q Consensus       495 ~~l~s~~~dg~v~iw~~~~  513 (517)
                      +...|.--|..|.-|++..
T Consensus       390 ~aYTtlfidSqvvkWni~~  408 (638)
T 3sbq_A          390 NAYTTLFIDSQVVKWNMEE  408 (638)
T ss_dssp             EEEEEETTTTEEEEEEHHH
T ss_pred             ceEeeeeecceEEEEeccH
Confidence            6777777899999999754

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=92.10  E-value=7.7  Score=36.19  Aligned_cols=263  Identities=11%  Similarity=0.038  Sum_probs=124.8

Q ss_pred             cCcEEEEEECC--CCCEEEEeeCCC--cEEEEEe-cCCCeeeEEEE---ecc--------CCCCEEEEEECCC--CCeEE
Q 042434          222 KNEVWFVQFSN--NGEYLASSSSDC--SAIIWKV-LEDSKLTLKHT---LRS--------HQNPVSFVAWSPD--DTKLL  283 (517)
Q Consensus       222 ~~~v~~~~~s~--~~~~l~t~~~dg--~i~iw~~-~~~~~~~~~~~---~~~--------h~~~v~~l~~s~~--~~~l~  283 (517)
                      ...|.++++.|  ++.+.+ ++..|  --.||.. +.+..+.....   +..        +...|.++++.|.  ...+.
T Consensus        54 ~~~v~~i~~dp~~~~~l~~-g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~  132 (394)
T 3b7f_A           54 GHTIHHIVQDPREPERMLM-AARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY  132 (394)
T ss_dssp             TSEEEEEEECSSSTTCEEE-EEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred             CCceEEEEECCCCCCeEEE-EecCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence            45799999998  444444 44444  1123433 33344433221   110        1125788999872  45666


Q ss_pred             EEeCCCeEEEEECCCCcEEEEeC-------------------CCCCceEEEEEeCC-CCeEEEeeCCCceeEEEEeCCCC
Q 042434          284 TCGNAEVLKLWDVETGICKHTFG-------------------DHGFIVSSCAWFPD-SKRLVCGSSDTEKGIFMCDCDGN  343 (517)
Q Consensus       284 s~~~dg~i~iwd~~~~~~~~~~~-------------------~~~~~v~~i~~~~~-~~~l~~~~~d~~v~i~~~~~~~~  343 (517)
                      +++..+.|...+ ..|+.-..+.                   .....+.++.+.|. ...++.+..++.  ++..+..+.
T Consensus       133 ~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~gg--l~~s~DgG~  209 (394)
T 3b7f_A          133 AGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGG--VFESTDAGT  209 (394)
T ss_dssp             EEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBE--EEEESSTTS
T ss_pred             EEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCC--EEEECCCCC
Confidence            666666554443 2233222221                   11245788999873 455565655444  666655554


Q ss_pred             eeEeeeCcC------------CCceEEEEEccC-CCEEEEEeCCCcEEEEECCCce-EEeec--cC---CCeeEEEEcC-
Q 042434          344 EIKAWRGTR------------IPKVLDLAVTPD-GENLISVLSDKDIRILNLGTYA-ERVIS--EE---HPITSLSVSV-  403 (517)
Q Consensus       344 ~~~~~~~~~------------~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~-~~~~~--~~---~~i~~~~~s~-  403 (517)
                      .-.......            ...+.++.+.|. ...++++...+ |...+-.... .....  ..   ..+..+.++| 
T Consensus       210 tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~D~G~tW~~~~~~l~~~~~~~~~~i~~~p~  288 (394)
T 3b7f_A          210 DWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMDRREGVWKRIGDAMPREVGDIGFPIVVHQR  288 (394)
T ss_dssp             SCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEETTTTEEECGGGGSCTTTCSCEEEEEECSS
T ss_pred             CceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeCCCCCcceECCCCCCCCCccceEEEEECCC
Confidence            443332110            124788999986 35666666544 5555433332 11111  11   2356778876 


Q ss_pred             CCCEEEEEeC-----------CCeEEEEEcCCCCccceEEe-CcccC-ce--E-EEeecCCC-CCcEEEEecCCCcEEEE
Q 042434          404 DCKNFIVNLN-----------SQEIHMWDVAGKWEKPFKYT-GHSQN-KY--V-IRSCFGGL-DGTFIASGSENSQIYIW  466 (517)
Q Consensus       404 ~~~~l~~~~~-----------d~~i~~~d~~~~~~~~~~~~-~~~~~-~~--~-i~~~~~s~-~~~~l~~~~~dg~i~iw  466 (517)
                      +...+.+++.           ++...+|........-..+. +.... .+  . ...+.++| +...|+.++.++.|+.-
T Consensus       289 ~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~S  368 (394)
T 3b7f_A          289 DPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWAS  368 (394)
T ss_dssp             CTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEEEE
T ss_pred             CCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeEEEE
Confidence            3444555532           23345555443212212211 11110 00  0 01222344 33446666666665543


Q ss_pred             ecCCCceeEEecCCCCCeeEEEec
Q 042434          467 NRRNSKPIEILSGHSMTVNCVSWN  490 (517)
Q Consensus       467 d~~~~~~~~~~~~h~~~v~~v~~~  490 (517)
                      + ..|+.-..+..+-..+.+|+|.
T Consensus       369 ~-D~G~tW~~~~~~lp~~~~v~~~  391 (394)
T 3b7f_A          369 A-DEGEHWQCIASHLPHIYAVQSA  391 (394)
T ss_dssp             S-STTSBCEEEECSCSCEEEEEEE
T ss_pred             C-CCCCCceEcccCCCCeeEEEEe
Confidence            2 3344444444444567777764

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=92.09  E-value=0.54  Score=42.87  Aligned_cols=113  Identities=12%  Similarity=0.150  Sum_probs=66.1

Q ss_pred             CEEEEEeCCCcEEEEECCCce-EEeeccC--CCeeEEEE--cC-CCCEEEEE-eCCCeEEEEEcCCCCccceEEeCccc-
Q 042434          366 ENLISVLSDKDIRILNLGTYA-ERVISEE--HPITSLSV--SV-DCKNFIVN-LNSQEIHMWDVAGKWEKPFKYTGHSQ-  437 (517)
Q Consensus       366 ~~l~~~~~dg~i~i~d~~~~~-~~~~~~~--~~i~~~~~--s~-~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~-  437 (517)
                      ..+++++.||.|+-+|..+++ .......  .++....-  .+ ++..++.. +.||.+..++..++ .....+..... 
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G-~~~~~~~~~~lv   89 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQG-LQKLPLSIRQLV   89 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTE-EEEEEEEHHHHH
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCC-cEEeeeccccce
Confidence            368899999999999998888 3333222  22221110  01 22333343 68999999998765 22222221110 


Q ss_pred             CceEEEe--ec-C-----CCCCcEEEEecCCCcEEEEecCCCceeEEecC
Q 042434          438 NKYVIRS--CF-G-----GLDGTFIASGSENSQIYIWNRRNSKPIEILSG  479 (517)
Q Consensus       438 ~~~~i~~--~~-~-----s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  479 (517)
                      ....+..  .. .     ...+..+++|+.+|.++..|+.+|+.+..+..
T Consensus        90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~  139 (339)
T 2be1_A           90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP  139 (339)
T ss_dssp             TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred             eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence            0000110  00 0     01466889999999999999999999998863

>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}

Probab=90.70  E-value=0.26  Score=33.71  Aligned_cols=30  Identities=10%  Similarity=0.113  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHhhcChHHHHHHHhhhcCee
Q 042434           17 YEFVRVVVQCLYSLGYQKSASCLESESGVS   46 (517)
Q Consensus        17 ~~~~~li~q~L~~~g~~~s~~~l~~Esg~~   46 (517)
                      .-+..||-.||.-+||+-|+.+|+-|+|.+
T Consensus        19 rLi~~LVrEyLef~~l~~TlsVf~pEs~l~   48 (82)
T 2d68_A           19 RLVASLVAEFLQFFNLDFTLAVFQPETSTL   48 (82)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHcCCcchHHhhhhccCCC
Confidence            347789999999999999999999999997

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=90.05  E-value=11  Score=34.18  Aligned_cols=198  Identities=10%  Similarity=0.041  Sum_probs=110.3

Q ss_pred             cCcEEEEEECCCCCEEEEeeCCCcEEEEEec---CCC---eeeEEEE---eccCCCCEEEE-EECC--CCCeEEEEeCCC
Q 042434          222 KNEVWFVQFSNNGEYLASSSSDCSAIIWKVL---EDS---KLTLKHT---LRSHQNPVSFV-AWSP--DDTKLLTCGNAE  289 (517)
Q Consensus       222 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~---~~~---~~~~~~~---~~~h~~~v~~l-~~s~--~~~~l~s~~~dg  289 (517)
                      .+.+..+........|+.-+..|.++-....   ...   ...++..   +. ....|.++ ...+  +..+++.++.+|
T Consensus        41 ~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G  119 (327)
T 3uc1_A           41 DDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNG  119 (327)
T ss_dssp             GGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTS
T ss_pred             CCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCC
Confidence            3444444444444556655667776655432   110   1111111   11 23445554 4432  578999999999


Q ss_pred             eEEEEECCCCc-------EEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCC--CCe--------eEeeeCcC
Q 042434          290 VLKLWDVETGI-------CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD--GNE--------IKAWRGTR  352 (517)
Q Consensus       290 ~i~iwd~~~~~-------~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~--~~~--------~~~~~~~~  352 (517)
                      .++.-.+..-.       ....+.. ...+..+........++..+..|.  ++.+...  .-+        ...+....
T Consensus       120 ~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~--~~rf~~~~~eip~~gr~a~Gv~~i~L~~  196 (327)
T 3uc1_A          120 LVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQ--SIRFSATDEALRPMGRATSGVQGMRFNI  196 (327)
T ss_dssp             EEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSE--EEEEECCTTTSCCCCTTSBCEESSCCCT
T ss_pred             EEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCe--EEEEECcccccCcCCcCCCCeeeecCCC
Confidence            99998764421       1112323 445555555556677888888887  6666554  211        11122223


Q ss_pred             CCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--------EEee---ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEE
Q 042434          353 IPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--------ERVI---SEEHPITSLSVSVDCKNFIVNLNSQEIHMWD  421 (517)
Q Consensus       353 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------~~~~---~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d  421 (517)
                      ...|.++...+++..++..+..|.++.-.+....        ....   .....+..+....+...++..+.+|.+..++
T Consensus       197 ~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~  276 (327)
T 3uc1_A          197 DDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTA  276 (327)
T ss_dssp             TCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEE
T ss_pred             CCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEe
Confidence            3467777777777789999999999888764322        1111   1123444444444555677777777777776


Q ss_pred             cC
Q 042434          422 VA  423 (517)
Q Consensus       422 ~~  423 (517)
                      ..
T Consensus       277 ~~  278 (327)
T 3uc1_A          277 AR  278 (327)
T ss_dssp             GG
T ss_pred             hh
Confidence            63

>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}

Probab=87.79  E-value=14  Score=32.51  Aligned_cols=192  Identities=10%  Similarity=0.007  Sum_probs=109.3

Q ss_pred             CcEEEEEECCCCCEEEEeeCCCcEEEE---EecCCCeeeEEEEeccCCCCEEEEEECC--CCCeEEEEeCCCeEEEEECC
Q 042434          223 NEVWFVQFSNNGEYLASSSSDCSAIIW---KVLEDSKLTLKHTLRSHQNPVSFVAWSP--DDTKLLTCGNAEVLKLWDVE  297 (517)
Q Consensus       223 ~~v~~~~~s~~~~~l~t~~~dg~i~iw---~~~~~~~~~~~~~~~~h~~~v~~l~~s~--~~~~l~s~~~dg~i~iwd~~  297 (517)
                      +.+..+.......+|+.-+.+|.++--   ++....... +  +. ....|..+.- +  +..+++..+.+|.++...+.
T Consensus        24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-l--l~-~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~   98 (276)
T 3no0_A           24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS-L--KS-REEKIVGAFI-REKFGNRLLLATKKGYVKKIPLA   98 (276)
T ss_dssp             CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC-C--SS-TTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGG
T ss_pred             CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc-c--CC-CCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHH
Confidence            455555544445566666777876643   333221111 1  32 3556666644 4  46789999999999998875


Q ss_pred             CCc------EEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC--------CeeEeeeCcCCCceEEEEEcc
Q 042434          298 TGI------CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG--------NEIKAWRGTRIPKVLDLAVTP  363 (517)
Q Consensus       298 ~~~------~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~--------~~~~~~~~~~~~~i~~~~~~~  363 (517)
                      .-.      ....+. ....+..+....+...++..+..|.  ++.+....        .-...+.......|..+...+
T Consensus        99 ~~~~~~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~--~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~  175 (276)
T 3no0_A           99 EFEYKAQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGR--VARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWN  175 (276)
T ss_dssp             GTTTCSTTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSE--EEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEES
T ss_pred             HhhhhcCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCE--EEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeC
Confidence            432      111222 2345555555556668888888888  66665431        111112222234677766666


Q ss_pred             CCCEEEEEeCCCcEEEEECCCce--------EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEE--EEc
Q 042434          364 DGENLISVLSDKDIRILNLGTYA--------ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHM--WDV  422 (517)
Q Consensus       364 ~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~--~d~  422 (517)
                      ++..++..+..|.++...+....        .........+..+....+...++..+.+|.+..  ++.
T Consensus       176 ~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~  244 (276)
T 3no0_A          176 GEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVSGTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQ  244 (276)
T ss_dssp             SCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECCCSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEG
T ss_pred             CCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEEcCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCH
Confidence            67789999999999988874432        111123334444433333445666666776666  665

>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}

Probab=86.29  E-value=17  Score=31.95  Aligned_cols=194  Identities=8%  Similarity=-0.005  Sum_probs=105.1

Q ss_pred             CCEEEEEECCCCCeEEEEeCCCeEEE---EECCCCcEEEEeCCCCCceEEEEEeC--CCCeEEEeeCCCceeEEEEeCCC
Q 042434          268 NPVSFVAWSPDDTKLLTCGNAEVLKL---WDVETGICKHTFGDHGFIVSSCAWFP--DSKRLVCGSSDTEKGIFMCDCDG  342 (517)
Q Consensus       268 ~~v~~l~~s~~~~~l~s~~~dg~i~i---wd~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~~d~~v~i~~~~~~~  342 (517)
                      +.+..+.-.....+|+.-+.+|.++-   |++..+.....+ .....|..+.. +  +...++..+.+|.  +.......
T Consensus        24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll-~~~e~i~~v~~-~~~~~~~~v~~T~~G~--iKr~~l~~   99 (276)
T 3no0_A           24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLK-SREEKIVGAFI-REKFGNRLLLATKKGY--VKKIPLAE   99 (276)
T ss_dssp             CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCS-STTCCEEEEEE-GGGSCSEEEEEETTSE--EEEEEGGG
T ss_pred             CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccC-CCCCEEEEEEC-CcCCCCEEEEEeCCCE--EEEEEHHH
Confidence            34444443334445555566665543   333322111113 33556666644 4  4678999999998  55555432


Q ss_pred             C-----eeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--------E--EeeccCCCeeEEEEcCCCCE
Q 042434          343 N-----EIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--------E--RVISEEHPITSLSVSVDCKN  407 (517)
Q Consensus       343 ~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------~--~~~~~~~~i~~~~~s~~~~~  407 (517)
                      -     -...........+..+........++..+..|.+..++...-.        .  ........+..+...+++..
T Consensus       100 ~~~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~  179 (276)
T 3no0_A          100 FEYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPY  179 (276)
T ss_dssp             TTTCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSE
T ss_pred             hhhhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCE
Confidence            1     1222222233466666666667789999999998888753311        1  11233456666666666778


Q ss_pred             EEEEeCCCeEEEEEcCCCCc------cceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEE--EecC
Q 042434          408 FIVNLNSQEIHMWDVAGKWE------KPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYI--WNRR  469 (517)
Q Consensus       408 l~~~~~d~~i~~~d~~~~~~------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i--wd~~  469 (517)
                      ++..+..|.++...+..-..      -...+   ......+...... ++..++..+.+|.+..  ++..
T Consensus       180 ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i---~~~~~lv~~~~~~-~~~~i~~~t~~G~~ir~~~~~~  245 (276)
T 3no0_A          180 LLVITAKGRVKKISHEEIPKTNRGVKGTEVS---GTKDTLVDLIPIK-EEVELLITTKNGKAFYDKINQK  245 (276)
T ss_dssp             EEEEETTSCEEEEEGGGSCCCCTTCCCEECC---CSSSCEEEEEEES-SEEEEEEEETTSCEEEEEEEGG
T ss_pred             EEEEeCCCcEEEeEHHHcccCCCCCcceEEE---cCCCcEEEEEEeC-CCCEEEEEcCCCeEEEeeeCHH
Confidence            99999999988887632100      11111   1112223222222 3345666677777766  7654

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=81.72  E-value=29  Score=31.08  Aligned_cols=190  Identities=9%  Similarity=0.057  Sum_probs=105.7

Q ss_pred             CCCCeEEEEeCCCeEEEEECCCCcE-------EEEeC-CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC------
Q 042434          277 PDDTKLLTCGNAEVLKLWDVETGIC-------KHTFG-DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG------  342 (517)
Q Consensus       277 ~~~~~l~s~~~dg~i~iwd~~~~~~-------~~~~~-~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~------  342 (517)
                      ++...+++.+.+|.|+--.+..-+.       +..+. .....+..+........++..+..|.  ++.+....      
T Consensus         6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~--~~~~~~~~ip~~~r   83 (312)
T 1suu_A            6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGK--LYLINAYEIKDSSR   83 (312)
T ss_dssp             --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSE--EEEEEGGGSCC---
T ss_pred             CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCe--EEEEEHHHCCCCCc
Confidence            5667888889999998876643211       11111 12344455555555667777788887  55554421      


Q ss_pred             ----CeeE-eeeCcCCCceEEEEEcc---CCCEEEEEeCCCcEEEEECCCce--------EEeeccCCCeeEEEEcCCCC
Q 042434          343 ----NEIK-AWRGTRIPKVLDLAVTP---DGENLISVLSDKDIRILNLGTYA--------ERVISEEHPITSLSVSVDCK  406 (517)
Q Consensus       343 ----~~~~-~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~i~~~~~s~~~~  406 (517)
                          ..+. .+.......|..+...+   +..+++..+..|.++...+....        .........+..+.....+.
T Consensus        84 ~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~~  163 (312)
T 1suu_A           84 ASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDE  163 (312)
T ss_dssp             ----CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTTC
T ss_pred             cCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCCC
Confidence                1100 11111223455554433   46688899999999988875432        11122344566665555567


Q ss_pred             EEEEEeCCCeEEEEEcCCCCcc-----ceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecC
Q 042434          407 NFIVNLNSQEIHMWDVAGKWEK-----PFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRR  469 (517)
Q Consensus       407 ~l~~~~~d~~i~~~d~~~~~~~-----~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~  469 (517)
                      .++..+.+|.+..+....-...     -.....-......+...... ++..+++.+..|..+..++.
T Consensus       164 ~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~-~~~~l~~vt~~G~~kr~~~~  230 (312)
T 1suu_A          164 KVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVK-ENPYLLIVSENGYGKRLNMS  230 (312)
T ss_dssp             EEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECT-TCSEEEEEETTSEEEEEEGG
T ss_pred             EEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEEC-CCCeEEEEECCCceEEEEHH
Confidence            8889999999988887431000     00111111122333333333 45567788889998888764

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}

Probab=81.00  E-value=35  Score=31.61  Aligned_cols=265  Identities=12%  Similarity=0.160  Sum_probs=126.4

Q ss_pred             EEEEeeCCCcEEEEEecCCCe--------eeEEEEecc-CCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCC-------
Q 042434          236 YLASSSSDCSAIIWKVLEDSK--------LTLKHTLRS-HQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETG-------  299 (517)
Q Consensus       236 ~l~t~~~dg~i~iw~~~~~~~--------~~~~~~~~~-h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~-------  299 (517)
                      .++.-..||+|..|=.....+        ......+.. ....|..++-  .....+....||.|..|-....       
T Consensus        12 ~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~--G~~~~~~l~~~G~v~~wG~n~~GqLG~g~   89 (389)
T 3kci_A           12 ENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIG--GEQTLFAVTADGKLYATGYGAGGRLGIGG   89 (389)
T ss_dssp             ---------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEE--ETTEEEEEETTSCEEEEECCGGGTTSSSS
T ss_pred             cceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEe--CCCeEEEEcCCCcEEEEECCCCCCCCCCC
Confidence            444445677888885543211        111111110 1123444443  2345555677889999854321       


Q ss_pred             -c---EEEEeC-CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC---------C---eeEeeeCcCCCceEEEEEc
Q 042434          300 -I---CKHTFG-DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG---------N---EIKAWRGTRIPKVLDLAVT  362 (517)
Q Consensus       300 -~---~~~~~~-~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~---------~---~~~~~~~~~~~~i~~~~~~  362 (517)
                       .   ....+. .....+..++.+......+.-+.||.  ||.|-...         .   ............|..++. 
T Consensus        90 ~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~--v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~-  166 (389)
T 3kci_A           90 TESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGE--VYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAA-  166 (389)
T ss_dssp             SCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSC--EEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEE-
T ss_pred             cCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCC--EEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEe-
Confidence             1   111121 12334555666666667777788888  88886531         0   011111111124555444 


Q ss_pred             cCCCEEEEEeCCCcEEEEECCCce------------EEe--eccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc-
Q 042434          363 PDGENLISVLSDKDIRILNLGTYA------------ERV--ISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWE-  427 (517)
Q Consensus       363 ~~~~~l~~~~~dg~i~i~d~~~~~------------~~~--~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~-  427 (517)
                       .....++...+|.|+.|-....-            ...  ......+..++......+.++-..+|.|+.|-.....+ 
T Consensus       167 -G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqL  245 (389)
T 3kci_A          167 -GGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKL  245 (389)
T ss_dssp             -CSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTT
T ss_pred             -CcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCC
Confidence             34566667789999999754310            111  11233456666554445677778899999997532111 


Q ss_pred             ---------cceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCC-c----------eeEEecC-CCCCeeE
Q 042434          428 ---------KPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS-K----------PIEILSG-HSMTVNC  486 (517)
Q Consensus       428 ---------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~----------~~~~~~~-h~~~v~~  486 (517)
                               .+..+.... ....+...+   ...+.++-..||.|+.|-.... +          ....+.. ....|..
T Consensus       246 G~g~~~~~~~p~~v~~~~-~~~v~~v~~---G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~  321 (389)
T 3kci_A          246 GRGGSDGCKVPMKIDSLT-GLGVVKVEC---GSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIA  321 (389)
T ss_dssp             SSSSCCCEEEEEECGGGT-TSCEEEEEE---ETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEE
T ss_pred             CCCCCCCccccEEecccC-CCcEEEEeC---CCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEE
Confidence                     111111111 111111111   2234444567999999965321 0          0111111 2235667


Q ss_pred             EEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434          487 VSWNPKRPKMLASASDDHTIRIWGPCQ  513 (517)
Q Consensus       487 v~~~~~~~~~l~s~~~dg~v~iw~~~~  513 (517)
                      |+....   ..+....||.|+.|-...
T Consensus       322 ia~G~~---h~~al~~~G~v~~wG~n~  345 (389)
T 3kci_A          322 IATGSL---HCVCCTEDGEVYTWGDND  345 (389)
T ss_dssp             EEECSS---EEEEEETTCCEEEEECCT
T ss_pred             EEeccC---eEEEECCCCCEEEeeCCC
Confidence            766433   345567899999997654

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=80.99  E-value=17  Score=38.45  Aligned_cols=38  Identities=21%  Similarity=0.240  Sum_probs=33.4

Q ss_pred             CCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEe
Q 042434          268 NPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTF  305 (517)
Q Consensus       268 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  305 (517)
                      ..+.+++..++..++++-+.|+++|+|++.+++++.+.
T Consensus       236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence            35777888888899999999999999999999998865

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=80.82  E-value=14  Score=39.21  Aligned_cols=33  Identities=6%  Similarity=-0.038  Sum_probs=28.3

Q ss_pred             cCCCCCcEEEEecCCCcEEEEecCCCceeEEec
Q 042434          446 FGGLDGTFIASGSENSQIYIWNRRNSKPIEILS  478 (517)
Q Consensus       446 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  478 (517)
                      ...++..++++-+.|+++|+|++.+++++.+..
T Consensus       242 ~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          242 IFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             EEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            335778899999999999999999999888753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	517
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-34
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-16
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-13
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-05
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-32
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	7e-17
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-16
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-12
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-31
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-15
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-14
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	8e-10
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-24
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-12
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-11
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	7e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-22
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	8e-21
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-19
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-10
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-20
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-09
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	5e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-19
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	7e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-19
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-18
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	9e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-18
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	7e-12
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-11
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-09
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-17
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-17
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-11
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	9e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	9e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-15
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-12
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-14
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-08
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-05
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	5e-14
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	5e-08
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	5e-14
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-08
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	5e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-13
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	2e-08
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	4e-05
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	3e-08
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	3e-08
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	5e-04
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-08
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	7e-08
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	7e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	2e-05
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	3e-04
d2p4oa1	302	b.68.6.3 (A:4-305) Hypothetical protein All0351 ho	2e-04
d1k32a2	281	b.68.7.1 (A:39-319) Tricorn protease N-terminal do	3e-04
d2bgra1	470	b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26,	0.001

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  129 bits (325), Expect = 2e-34
 Identities = 59/317 (18%), Positives = 117/317 (36%), Gaps = 32/317 (10%)

Query: 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVA 274
              L+ H++ V  V F      + S+S D +  +W          + TL+ H + V  ++
Sbjct: 10  KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDY---ETGDFERTLKGHTDSVQDIS 66

Query: 275 WSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKG 334
           +      L +C     +KLWD +   C  T   H   VSS +  P+   +V  S D    
Sbjct: 67  FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIK 126

Query: 335 IFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEH 394
           ++                  +++      DG  + S  +D+ +R+  + T   +    EH
Sbjct: 127 MWEVQTGYCVKTFTGHREWVRMV--RPNQDGTLIASCSNDQTVRVWVVATKECKAELREH 184

Query: 395 PITSLSVSVDCKNFIVNLNSQ----------------------EIHMWDVAGKWEKPFKY 432
                 +S   ++   +++                         I MWDV+         
Sbjct: 185 RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS-TGMCLMTL 243

Query: 433 TGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPK 492
            GH      +R       G FI S +++  + +W+ +N + ++ L+ H   V  + ++  
Sbjct: 244 VGHDNW---VRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKT 300

Query: 493 RPKMLASASDDHTIRIW 509
               + + S D T+++W
Sbjct: 301 A-PYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.6 bits (192), Expect = 1e-16
 Identities = 29/129 (22%), Positives = 47/129 (36%), Gaps = 3/129 (2%)

Query: 202 DHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKH 261
            H         E+              +    G +L S S D +  +W   + S      
Sbjct: 185 RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW---DVSTGMCLM 241

Query: 262 TLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDS 321
           TL  H N V  V +      +L+C + + L++WD +   C  T   H   V+S  +   +
Sbjct: 242 TLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTA 301

Query: 322 KRLVCGSSD 330
             +V GS D
Sbjct: 302 PYVVTGSVD 310

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.4 bits (168), Expect = 1e-13
 Identities = 49/256 (19%), Positives = 91/256 (35%), Gaps = 27/256 (10%)

Query: 188 CQYHNSSVAISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAI 247
             +    +A    +      D    E ++ +  H + V  V    NG+++ S+S D +  
Sbjct: 67  FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIK 126

Query: 248 IWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGD 307
           +W+V          T   H+  V  V  + D T + +C N + +++W V T  CK    +
Sbjct: 127 MWEV---QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE 183

Query: 308 HGFIVSSCAWFPDS--------------------KRLVCGSSDTEKGIFMCDCDGNEIKA 347
           H  +V   +W P+S                      L+ GS D    ++     G  +  
Sbjct: 184 HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS-TGMCLMT 242

Query: 348 WRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEH--PITSLSVSVDC 405
             G     V  +     G+ ++S   DK +R+ +            H   +TSL      
Sbjct: 243 LVGHDNW-VRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTA 301

Query: 406 KNFIVNLNSQEIHMWD 421
              +     Q + +W+
Sbjct: 302 PYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.2 bits (100), Expect = 4e-05
 Identities = 13/84 (15%), Positives = 31/84 (36%), Gaps = 3/84 (3%)

Query: 430 FKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSW 489
           +  +GH      +         + + S SE++ I +W+         L GH+ +V  +S+
Sbjct: 11  YALSGHRSP---VTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISF 67

Query: 490 NPKRPKMLASASDDHTIRIWGPCQ 513
           +     + + ++D           
Sbjct: 68  DHSGKLLASCSADMTIKLWDFQGF 91

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  123 bits (309), Expect = 6e-32
 Identities = 53/343 (15%), Positives = 122/343 (35%), Gaps = 11/343 (3%)

Query: 172 RLEHLVETA--VTSQIDSCQYHNSSVAISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQ 229
            L+ L + A  + +QI   +   +   +S   ++     +I   T + L  H  +++ + 
Sbjct: 3   ELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMH 62

Query: 230 FSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAE 289
           +  +   L S+S D   IIW     +K+   H +    + V   A++P    +   G   
Sbjct: 63  WGTDSRLLVSASQDGKLIIWDSYTTNKV---HAIPLRSSWVMTCAYAPSGNYVACGGLDN 119

Query: 290 VLKLWDVETGICKHTF-GDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAW 348
           +  +++++T         +        +           +S  +    + D +  +    
Sbjct: 120 ICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTT 179

Query: 349 RGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEH--PITSLSVSVDCK 406
                  V+ L++ PD    +S   D   ++ ++     R     H   I ++    +  
Sbjct: 180 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN 239

Query: 407 NFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIW 466
            F    +     ++D+    E       +      I S      G  + +G ++    +W
Sbjct: 240 AFATGSDDATCRLFDLRADQELMTYSHDNIICG--ITSVSFSKSGRLLLAGYDDFNCNVW 297

Query: 467 NRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
           +   +    +L+GH   V+C+         +A+ S D  ++IW
Sbjct: 298 DALKADRAGVLAGHDNRVSCLGVTDD-GMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 79.8 bits (195), Expect = 7e-17
 Identities = 31/163 (19%), Positives = 61/163 (37%), Gaps = 2/163 (1%)

Query: 261 HTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPD 320
            T   H   V  ++ +PD    ++       KLWDV  G+C+ TF  H   +++  +FP+
Sbjct: 178 TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPN 237

Query: 321 SKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRIL 380
                 GS D    +F    D   +       I  +  ++ +  G  L++   D +  + 
Sbjct: 238 GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVW 297

Query: 381 NLGTYAERVISEEH--PITSLSVSVDCKNFIVNLNSQEIHMWD 421
           +        +   H   ++ L V+ D            + +W+
Sbjct: 298 DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 78.2 bits (191), Expect = 2e-16
 Identities = 41/258 (15%), Positives = 76/258 (29%), Gaps = 44/258 (17%)

Query: 256 KLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSC 315
           ++  + TLR H   +  + W  D   L++      L +WD  T    H        V +C
Sbjct: 44  QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC 103

Query: 316 AWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDK 375
           A+ P    + CG  D    I+        ++  R                          
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSR-------------------------- 137

Query: 376 DIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGH 435
                            E    +  +S         + +            E   + T  
Sbjct: 138 -----------------ELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTF 180

Query: 436 SQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPK 495
           + +   + S     D     SG+ ++   +W+ R     +  +GH   +N + + P    
Sbjct: 181 TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG-N 239

Query: 496 MLASASDDHTIRIWGPCQ 513
             A+ SDD T R++    
Sbjct: 240 AFATGSDDATCRLFDLRA 257

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.5 bits (158), Expect = 3e-12
 Identities = 22/118 (18%), Positives = 38/118 (32%), Gaps = 7/118 (5%)

Query: 182 TSQIDSCQYH-NSSVAISLYED---HCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYL 237
            S I++  +  N +   +  +D                         +  V FS +G  L
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285

Query: 238 ASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWD 295
            +   D +  +W      K      L  H N VS +  + D   + T      LK+W+
Sbjct: 286 LAGYDDFNCNVWDA---LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.5 bits (93), Expect = 4e-04
 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 467 NRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSEV 517
            R   +    L GH   +  + W     ++L SAS D  + IW    +++V
Sbjct: 41  GRIQMRTRRTLRGHLAKIYAMHWGTDS-RLLVSASQDGKLIIWDSYTTNKV 90

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  121 bits (304), Expect = 6e-31
 Identities = 64/333 (19%), Positives = 128/333 (38%), Gaps = 40/333 (12%)

Query: 214 TVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKV---------------LEDSKLT 258
            +    +H + V  V+FSN+GEYLA+   + +  +++V                +D +  
Sbjct: 54  ELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENL 112

Query: 259 LKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWF 318
              +  S    +  V +SPD   L T     ++++WD+E          H   + S  +F
Sbjct: 113 NTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYF 172

Query: 319 PDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIR 378
           P   +LV GS D    + + D    +                   DG+ + +   D+ +R
Sbjct: 173 PSGDKLVSGSGDRT--VRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVR 230

Query: 379 ILNLGT---------YAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKP 429
           + +  T           E     +  + S+  + D ++ +     + + +W++     K 
Sbjct: 231 VWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKS 290

Query: 430 FKYTGHSQ--------NKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHS 481
              T +S         +K  + S     +  +I SGS++  +  W++++  P+ +L GH 
Sbjct: 291 DSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHR 350

Query: 482 MTVNCVSWNPKRP-----KMLASASDDHTIRIW 509
            +V  V+            + A+ S D   RIW
Sbjct: 351 NSVISVAVANGSSLGPEYNVFATGSGDCKARIW 383

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.2 bits (183), Expect = 3e-15
 Identities = 31/149 (20%), Positives = 57/149 (38%), Gaps = 15/149 (10%)

Query: 197 ISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSK 256
           + +++       +      +  T HK+ V+ V F+ +G+ + S S D S  +W +   + 
Sbjct: 229 VRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN 288

Query: 257 L---------TLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGD 307
                     T + T   H++ V  VA + +D  +L+      +  WD ++G        
Sbjct: 289 KSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQG 348

Query: 308 HGFIVSSCAWF------PDSKRLVCGSSD 330
           H   V S A        P+      GS D
Sbjct: 349 HRNSVISVAVANGSSLGPEYNVFATGSGD 377

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.7 bits (179), Expect = 1e-14
 Identities = 45/293 (15%), Positives = 99/293 (33%), Gaps = 26/293 (8%)

Query: 197 ISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSK 256
           ++   D                      +  V FS +G++LA+ + D    IW +     
Sbjct: 96  VARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKI 155

Query: 257 LTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCA 316
           + +      H+  +  + + P   KL++      +++WD+ TG C  T      + +   
Sbjct: 156 VMILQG---HEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAV 212

Query: 317 WFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPK-----VLDLAVTPDGENLISV 371
              D K +  GS D    ++  +      +              V  +  T DG++++S 
Sbjct: 213 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG 272

Query: 372 LSDKDIRILNLGTYAERV--------------ISEEHPITSLSVSVDCKNFIVNLNSQEI 417
             D+ +++ NL     +               I  +  + S++ + + +  +     + +
Sbjct: 273 SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGV 332

Query: 418 HMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGL---DGTFIASGSENSQIYIWN 467
             WD            GH  +   +    G     +    A+GS + +  IW 
Sbjct: 333 LFWDKK-SGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.3 bits (139), Expect = 8e-10
 Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 9/83 (10%)

Query: 221 HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVA------ 274
           HK+ V  V  + N EY+ S S D   + W             L+ H+N V  VA      
Sbjct: 307 HKDFVLSVATTQNDEYILSGSKDRGVLFWDK---KSGNPLLMLQGHRNSVISVAVANGSS 363

Query: 275 WSPDDTKLLTCGNAEVLKLWDVE 297
             P+     T       ++W  +
Sbjct: 364 LGPEYNVFATGSGDCKARIWKYK 386

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (249), Expect = 6e-24
 Identities = 50/305 (16%), Positives = 93/305 (30%), Gaps = 12/305 (3%)

Query: 209 QIPTETVQILT-EHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLED--SKLTLKHTLRS 265
            IP    QI T  H   V  V  SN   ++ +    C   +W +          +    +
Sbjct: 37  GIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGC-VKVWDISHPGNKSPVSQLDCLN 95

Query: 266 HQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLV 325
             N +      PD   L+  G A  L +WD+     +          +  A        V
Sbjct: 96  RDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKV 155

Query: 326 CGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTY 385
           C S  ++  I + D     +             + ++ DG  L +   D  +R  +L   
Sbjct: 156 CFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG 215

Query: 386 AERVISEEH-PITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRS 444
            +    +    I SL      +   V + S  + +  V               ++  + S
Sbjct: 216 RQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD-----KYQLHLHESCVLS 270

Query: 445 CFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDH 504
                 G +  S  +++ +  W       I   S  S +V     +    K + + S D 
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASI-FQSKESSSVLSCDISVDD-KYIVTGSGDK 328

Query: 505 TIRIW 509
              ++
Sbjct: 329 KATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.6 bits (158), Expect = 3e-12
 Identities = 23/143 (16%), Positives = 50/143 (34%), Gaps = 5/143 (3%)

Query: 188 CQYHNSSVAISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAI 247
              ++ +   +   D+      +         +  ++++ + +   GE+LA      +  
Sbjct: 190 DISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVE 249

Query: 248 IWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGD 307
           +  V +  K    + L  H++ V  + ++      ++ G   +L  W    G        
Sbjct: 250 VLHVNKPDK----YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK- 304

Query: 308 HGFIVSSCAWFPDSKRLVCGSSD 330
               V SC    D K +V GS D
Sbjct: 305 ESSSVLSCDISVDDKYIVTGSGD 327

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.5 bits (150), Expect = 3e-11
 Identities = 15/97 (15%), Positives = 34/97 (35%), Gaps = 4/97 (4%)

Query: 200 YEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTL 259
            E        +       L  H++ V  ++F+  G++  S+  D     W+    + +  
Sbjct: 243 MESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ 302

Query: 260 KHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDV 296
                   + V     S DD  ++T    +   +++V
Sbjct: 303 SK----ESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 4e-07
 Identities = 31/292 (10%), Positives = 67/292 (22%), Gaps = 51/292 (17%)

Query: 264 RSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDV-ETGICKHTFGDHGFIVSSCAWFPDSK 322
                P      + D          + L    +       +T   HG +V +      ++
Sbjct: 6   AMGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLN-HGEVVCAVTISNPTR 64

Query: 323 RLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPK-----VLDLAVTPDGENLISVLSDKDI 377
            +  G       + + D      K+             +    + PDG  LI       +
Sbjct: 65  HVYTGGKGC---VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTL 121

Query: 378 RILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQ 437
            I +L     R+ +E         ++          S                       
Sbjct: 122 SIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQG 181

Query: 438 NKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRP--- 494
           +           DGT + +G  ++ +  W+ R  + ++     +  +  + + P      
Sbjct: 182 HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ-HDFTSQIFSLGYCPTGEWLA 240

Query: 495 -------------------------------------KMLASASDDHTIRIW 509
                                                K   S   D+ +  W
Sbjct: 241 VGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAW 292

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 7e-06
 Identities = 10/62 (16%), Positives = 26/62 (41%)

Query: 191 HNSSVAISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWK 250
           +     +S  +D+     + P       ++  + V     S + +Y+ + S D  A +++
Sbjct: 275 YCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334

Query: 251 VL 252
           V+
Sbjct: 335 VI 336

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 4e-05
 Identities = 29/254 (11%), Positives = 60/254 (23%), Gaps = 4/254 (1%)

Query: 170 ERRLEHLVETAVTSQIDSCQYHNSSVAISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQ 229
           +  +  L      + I SC+       + +  +               +           
Sbjct: 85  KSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 144

Query: 230 FSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAE 289
           ++      +     C +     + D                +      +D   L  G  +
Sbjct: 145 YALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD 204

Query: 290 VLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWR 349
                       +    D    + S  + P  + L       E             K   
Sbjct: 205 NTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAV---GMESSNVEVLHVNKPDKYQL 261

Query: 350 GTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAE-RVISEEHPITSLSVSVDCKNF 408
                 VL L     G+  +S   D  +        A      E   + S  +SVD K  
Sbjct: 262 HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYI 321

Query: 409 IVNLNSQEIHMWDV 422
           +     ++  +++V
Sbjct: 322 VTGSGDKKATVYEV 335

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 96.5 bits (238), Expect = 2e-22
 Identities = 32/326 (9%), Positives = 88/326 (26%), Gaps = 25/326 (7%)

Query: 213 ETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSF 272
           + VQI    K+ +  ++   +   L  +S D S  ++K    +K         +++P+  
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61

Query: 273 VAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTE 332
             +  +    +  G  +   L     G        +                   ++  +
Sbjct: 62  CNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWD 121

Query: 333 KGIFMCDCDGNEIKAWRGTRIPKV------LDLAVTPDGENLISVLSDKDIRILNLGTYA 386
             I + D             +             +  +   LI  +++  ++   L    
Sbjct: 122 GLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCE 181

Query: 387 ERVI------SEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEK-----------P 429
           +          +        +  + + +  +     + +     + +             
Sbjct: 182 DDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH 241

Query: 430 FKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSW 489
                 +   Y + S        F+ +   +  I  WN +  K I+  +  +   + V  
Sbjct: 242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-EDSVVKI 300

Query: 490 NPKRPKMLASASDDHTIRIWGPCQSS 515
                 +L  A+ D T +       +
Sbjct: 301 AC-SDNILCLATSDDTFKTNAAIDQT 325

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.4 bits (225), Expect = 8e-21
 Identities = 49/302 (16%), Positives = 99/302 (32%), Gaps = 18/302 (5%)

Query: 208 DQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQ 267
            +   ++ ++L  H + V        G  + S S D +  +W            TL  H 
Sbjct: 2   RRGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSA---VTGKCLRTLVGHT 57

Query: 268 NPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCG 327
             V       +    +    +    L        +     +G   +        KR+V G
Sbjct: 58  GGVWSSQMRDN----IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSG 113

Query: 328 SSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAE 387
           S D      +   D    +              V  DG  ++S   D  +++ +  T   
Sbjct: 114 SRD----ATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETC 169

Query: 388 RVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFG 447
               + H     S+  D  + +       I +WDV            H+   +   +   
Sbjct: 170 LHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCI------HTLTGHQSLTSGM 223

Query: 448 GLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIR 507
            L    + SG+ +S + IW+ +  + ++ L G +   + V+        + ++SDD T++
Sbjct: 224 ELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVK 283

Query: 508 IW 509
           +W
Sbjct: 284 LW 285

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.9 bits (216), Expect = 1e-19
 Identities = 46/261 (17%), Positives = 82/261 (31%), Gaps = 19/261 (7%)

Query: 249 WKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDH 308
           W+     +L     L+ H + V          ++++  +   LK+W   TG C  T   H
Sbjct: 1   WRR---GELKSPKVLKGHDDHV-ITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGH 56

Query: 309 GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENL 368
              V S     +           +          + +     T     L       G   
Sbjct: 57  TGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSR- 115

Query: 369 ISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEK 428
                D  +R+ ++ T     +   H      V  D +  +       + +WD       
Sbjct: 116 -----DATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPE-TETC 169

Query: 429 PFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVS 488
                GH+      R      DG  + SGS ++ I +W+      I  L+GH    + + 
Sbjct: 170 LHTLQGHTN-----RVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME 224

Query: 489 WNPKRPKMLASASDDHTIRIW 509
                  +L S + D T++IW
Sbjct: 225 LK---DNILVSGNADSTVKIW 242

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (142), Expect = 3e-10
 Identities = 26/153 (16%), Positives = 49/153 (32%), Gaps = 8/153 (5%)

Query: 183 SQIDSCQYHNSSVAISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSS 242
           +        +    +S   D    R         I T   ++            L S ++
Sbjct: 177 TNRVYSLQFDGIHVVSGSLDTSI-RVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNA 235

Query: 243 DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICK 302
           D +  IW +     L        HQ+ V+ + ++ +   ++T  +   +KLWD++TG   
Sbjct: 236 DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDLKTGEFI 293

Query: 303 HTF-----GDHGFIVSSCAWFPDSKRLVCGSSD 330
                   G  G +V              GS +
Sbjct: 294 RNLVTLESGGSGGVVWRIRASNTKLVCAVGSRN 326

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 90.4 bits (222), Expect = 2e-20
 Identities = 36/308 (11%), Positives = 82/308 (26%), Gaps = 19/308 (6%)

Query: 221 HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQ-NPVSFVAWSP-- 277
            +N    + +      +A      + +      DSK+        H  + V+ V +SP  
Sbjct: 16  QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK 75

Query: 278 DDTKLLTCGNAEVLKLWDVETGICKHTFGD--------HGFIVSSCAWFPDSKRLVCGSS 329
               L +   +  + +W        ++               +S  +W  + +RL     
Sbjct: 76  GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE 135

Query: 330 DTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERV 389
             +        D             ++    +          + D    +   G   +  
Sbjct: 136 GRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFS 195

Query: 390 I------SEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIR 443
                   +   +  +  S D   F++ + S            E         +      
Sbjct: 196 ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGI 255

Query: 444 SCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNC--VSWNPKRPKMLASAS 501
                LD    A+   ++ I +W+   SK ++  +     +    V         + S S
Sbjct: 256 FALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLS 315

Query: 502 DDHTIRIW 509
            D T+  +
Sbjct: 316 LDGTLNFY 323

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.8 bits (135), Expect = 2e-09
 Identities = 51/329 (15%), Positives = 90/329 (27%), Gaps = 24/329 (7%)

Query: 156 VELERLLPPPEVVPERRLEHLVETAVTSQIDSCQYHNSSVAISLYEDHCCGRDQIPTETV 215
           + L+ ++PP          HL     T+ I        S  +   +D     D      V
Sbjct: 3   ISLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYP--CGKSAFVRCLDD----GDSKVPPVV 56

Query: 216 QILTEHKNEVWFVQFS--NNGEYLASSSSDCSAIIWKVLEDSK-----LTLKHTLRSHQN 268
           Q      + V  V+FS     +YL S       I+W    D +     + +K   +    
Sbjct: 57  QFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAG 116

Query: 269 PVSFVAWSPDDTKLLTCGNAE--VLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVC 326
           P+S ++W  +  +L   G            ++G        H   +++C           
Sbjct: 117 PISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSM 176

Query: 327 GSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGE--------NLISVLSDKDIR 378
              D    +F          + R           V    +             +S  D +
Sbjct: 177 TVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK 236

Query: 379 ILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQN 438
                 Y E               +D + F        I +WDV    +   K+T   Q 
Sbjct: 237 SGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVT-TSKCVQKWTLDKQQ 295

Query: 439 KYVIRSCFGGLDGTFIASGSENSQIYIWN 467
               +          I S S +  +  + 
Sbjct: 296 LGNQQVGVVATGNGRIISLSLDGTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.8 bits (101), Expect = 3e-05
 Identities = 15/98 (15%), Positives = 33/98 (33%), Gaps = 2/98 (2%)

Query: 200 YEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTL 259
                 G+     + ++   E      F     + +  A+  +D +  +W V   SK   
Sbjct: 229 KISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDV-TTSKCVQ 287

Query: 260 KHTLRSHQNPVSFVAWSPD-DTKLLTCGNAEVLKLWDV 296
           K TL   Q     V      + ++++      L  +++
Sbjct: 288 KWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 5e-04
 Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 5/70 (7%)

Query: 450 DGTFIASGSENS-QIYIWNRRNSK--PIEILSGH-SMTVNCVSWNPKRP-KMLASASDDH 504
               IA     S  +   +  +SK  P+   +GH S  V  V ++P +  + L S  +  
Sbjct: 28  TTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESG 87

Query: 505 TIRIWGPCQS 514
            + +WG    
Sbjct: 88  KVIVWGWTFD 97

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 87.3 bits (214), Expect = 1e-19
 Identities = 49/305 (16%), Positives = 101/305 (33%), Gaps = 32/305 (10%)

Query: 213 ETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSF 272
           E ++ ++ H   +  +  +     L S S D   + W              + H N +  
Sbjct: 4   EVLKTISGHNKGITALTVN----PLISGSYDGRIMEWSS--------SSMHQDHSNLIVS 51

Query: 273 VAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTE 332
           +  S                 WD    +   T  + G      +   D    V  + D  
Sbjct: 52  LDNSKAQEYSSIS--------WDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDL 103

Query: 333 KGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISE 392
             + +    G+ IK+ R       + L+       L    + +  ++ +L    +     
Sbjct: 104 --LILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPL 161

Query: 393 EHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK-------WEKPFKYTGHSQNKYVIRSC 445
               + +S+S             +I ++D+  +         +  K    S       + 
Sbjct: 162 RAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGAN 221

Query: 446 FGGLDGTFIASGSENSQIYIWN-RRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDH 504
              ++   +A+GS ++ I+I++ +R  K I+ L+ H   VN + W    P  L S+  D 
Sbjct: 222 EEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET--PSTLVSSGADA 279

Query: 505 TIRIW 509
            I+ W
Sbjct: 280 CIKRW 284

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.7 bits (124), Expect = 4e-08
 Identities = 19/95 (20%), Positives = 39/95 (41%), Gaps = 3/95 (3%)

Query: 202 DHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKH 261
           +    R    T  +  ++    E    +     + +A+ S D +  I+ V    K+    
Sbjct: 195 EVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKII--K 252

Query: 262 TLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDV 296
            L +H++ V+ + W    T L++ G    +K W+V
Sbjct: 253 ALNAHKDGVNNLLWETPST-LVSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.6 bits (111), Expect = 1e-06
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 5/40 (12%)

Query: 470 NSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
           + + ++ +SGH+  +  ++ NP     L S S D  I  W
Sbjct: 2   HDEVLKTISGHNKGITALTVNP-----LISGSYDGRIMEW 36

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.2 bits (89), Expect = 7e-04
 Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 211 PTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVL 252
           P + ++ L  HK+ V  + +      L SS +D     W V+
Sbjct: 247 PMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNVV 287

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.8 bits (213), Expect = 1e-19
 Identities = 45/307 (14%), Positives = 93/307 (30%), Gaps = 30/307 (9%)

Query: 213 ETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSF 272
           + +   +E    V+ +Q+  + + + S   D +  IW     + L  K  L  H   V  
Sbjct: 6   QRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDK---NTLECKRILTGHTGSVLC 60

Query: 273 VAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTE 332
           + +        +  +   +   +    +          +                S    
Sbjct: 61  LQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRS---- 116

Query: 333 KGIFMCDCDGN-EIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVIS 391
             I + D     +I   R     +     V  D + ++S   D+ I++ N  T       
Sbjct: 117 --IAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTL 174

Query: 392 EEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDG 451
             H      +    +  +   +   I +WD+                 +         D 
Sbjct: 175 NGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACL------RVLEGHEELVRCIRFDN 228

Query: 452 TFIASGSENSQIYIWNRR---------NSKPIEILSGHSMTVNCVSWNPKRPKMLASASD 502
             I SG+ + +I +W+            +  +  L  HS  V  + ++  +   + S+S 
Sbjct: 229 KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQ---IVSSSH 285

Query: 503 DHTIRIW 509
           D TI IW
Sbjct: 286 DDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (105), Expect = 1e-05
 Identities = 15/64 (23%), Positives = 29/64 (45%)

Query: 450 DGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
           D   I SG  ++ I IW++   +   IL+GH+ +V C+ ++ +     +S S      + 
Sbjct: 24  DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVN 83

Query: 510 GPCQ 513
               
Sbjct: 84  TGEM 87

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 85.7 bits (210), Expect = 1e-18
 Identities = 44/358 (12%), Positives = 95/358 (26%), Gaps = 72/358 (20%)

Query: 219 TEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPD 278
           +     +    ++ +   +A   ++    I++    +K    H L+ H   V+ V W+PD
Sbjct: 4   SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEK-SGNKWVQVHELKEHNGQVTGVDWAPD 62

Query: 279 DTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMC 338
             +++TCG      +W ++    K T        ++                  + I +C
Sbjct: 63  SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISIC 122

Query: 339 D----CDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVI---- 390
                 D    K  +      VL L   P+   L +   D   RI +             
Sbjct: 123 YFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPT 182

Query: 391 ----------------SEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTG 434
                           S    +  +  S +        +   + + D   K       + 
Sbjct: 183 PWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASE 242

Query: 435 HSQNKYVIRSCFGGLDGTFIASGSENS-QIYIWNRRNSK--------------------- 472
                 V        + + +A+G +    ++ ++    K                     
Sbjct: 243 TLPLLAVTFIT----ESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTAR 298

Query: 473 ------------------PIEILSGHSMTVNCVSWNPK---RPKMLASASDDHTIRIW 509
                                + S H  +V+ +S       +     +   D  + IW
Sbjct: 299 ERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIW 356

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.1 bits (89), Expect = 9e-04
 Identities = 14/121 (11%), Positives = 29/121 (23%), Gaps = 8/121 (6%)

Query: 183 SQIDSCQYHNSSVAISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSS 242
             +       SS+  + ++                     +                 + 
Sbjct: 245 PLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNL 304

Query: 243 DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDD----TKLLTCGNAEVLKLWDVET 298
           D  A        S          H+N VS ++         ++  T G    + +WDV +
Sbjct: 305 DKKASSE----GSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360

Query: 299 G 299
            
Sbjct: 361 L 361

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 84.1 bits (206), Expect = 3e-18
 Identities = 25/313 (7%), Positives = 67/313 (21%), Gaps = 26/313 (8%)

Query: 216 QILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAW 275
            +       + +V+   + +      +     +      +    K     +   V  +  
Sbjct: 36  VLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFE--ENLGNVFAMGV 93

Query: 276 SPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGI 335
             +    +   +   +   D+ETG           +++      +S+ +  G        
Sbjct: 94  DRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGET 153

Query: 336 FM-------CDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAER 388
                                 T        A   D +NL  +         +       
Sbjct: 154 DGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFS 213

Query: 389 VISEEHP---------ITSLSVSVDCKNFI---VNLNSQEIHMWDVAGKWEKPFKYTGHS 436
                 P              +            +LN        +              
Sbjct: 214 FEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLE 273

Query: 437 QNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKM 496
            +  +      G    +     E   +  ++ +  K    ++     +  +  +  R K 
Sbjct: 274 SSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK----VTEVKNNLTDLRLSADR-KT 328

Query: 497 LASASDDHTIRIW 509
           +    DD  I  +
Sbjct: 329 VMVRKDDGKIYTF 341

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 64.5 bits (155), Expect = 7e-12
 Identities = 16/208 (7%), Positives = 38/208 (18%), Gaps = 17/208 (8%)

Query: 188 CQYHNSSVAISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAI 247
             +         Y         +    +   T   +  +   F  + + L   S      
Sbjct: 144 YGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDP 203

Query: 248 IWKVLEDSKLTLK----HTLRSHQNPVSFVAWSPDDTKLLT-------CGNAEVLKLWDV 296
               +  +           +       +     P                        D 
Sbjct: 204 SPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDP 263

Query: 297 ETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKV 356
                         I S       +             +   D    ++   +      +
Sbjct: 264 GDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGV--LLKYDVKTRKVTEVKN----NL 317

Query: 357 LDLAVTPDGENLISVLSDKDIRILNLGT 384
            DL ++ D + ++    D  I    L  
Sbjct: 318 TDLRLSADRKTVMVRKDDGKIYTFPLEK 345

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 63.7 bits (153), Expect = 2e-11
 Identities = 21/259 (8%), Positives = 51/259 (19%), Gaps = 26/259 (10%)

Query: 273 VAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTE 332
             +SP D  L+   +     + DV               +       D+K      +   
Sbjct: 8   EDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREG 65

Query: 333 KGIFMCDCDGNEIKAWRGTR-----------IPKVLDLAVTPDGENLISVLSDKDIRILN 381
             + + D    + + +                   +      +   +        +   +
Sbjct: 66  DFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS 125

Query: 382 LGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYV 441
                      ++                    Q IH++D+ G+                
Sbjct: 126 REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPA 185

Query: 442 IRSCFGGLDGTFIASGSENSQIYIWNRRN-------SKPIEILSGHSMTVNCVSWNPKRP 494
             +         +   S  S     +R              ++     + N     P R 
Sbjct: 186 FDAD-----SKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVP-RS 239

Query: 495 KMLASASDDHTIRIWGPCQ 513
               +   D          
Sbjct: 240 MTSEAGEYDLNDMYKRSSP 258

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 57.6 bits (137), Expect = 1e-09
 Identities = 9/102 (8%), Positives = 25/102 (24%), Gaps = 7/102 (6%)

Query: 203 HCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHT 262
                D      +  L                 Y   +      + + V           
Sbjct: 257 SPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVK-------TRK 309

Query: 263 LRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHT 304
           +   +N ++ +  S D   ++   +   +  + +E    + T
Sbjct: 310 VTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERT 351

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 81.2 bits (198), Expect = 2e-17
 Identities = 38/298 (12%), Positives = 91/298 (30%), Gaps = 10/298 (3%)

Query: 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVA 274
            Q+   H   +  +  S +G+ L S+ ++     W +   + ++ +     H   ++ + 
Sbjct: 5   DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDI--STGISNRVFPDVHATMITGIK 62

Query: 275 WSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKG 334
                  L T    + LK+          +      + S       S       +   K 
Sbjct: 63  T-TSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKH 121

Query: 335 IFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEH 394
           I +      ++     +     + L+       +    S   +  L+  + +E       
Sbjct: 122 IAIYSH--GKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHP 179

Query: 395 PITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFI 454
              +     +   F+V  +     +        +       + +   +       D   +
Sbjct: 180 AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRL 239

Query: 455 ASGSENSQIYIWNRRNSKPIEIL---SGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
           A+GS ++ + +WN        I+   +    +VN V W  +    + SA  D  I+ W
Sbjct: 240 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET--TIVSAGQDSNIKFW 295

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.6 bits (103), Expect = 1e-05
 Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 1/109 (0%)

Query: 188 CQYHNSSVAISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAI 247
                 +   S         +          T H  +V  V +S +   LA+ S D S I
Sbjct: 190 NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVI 249

Query: 248 IWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDV 296
           +W + + S   +        + V+ V W  ++T +++ G    +K W+V
Sbjct: 250 VWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNV 297

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 79.9 bits (195), Expect = 4e-17
 Identities = 41/290 (14%), Positives = 78/290 (26%), Gaps = 12/290 (4%)

Query: 230 FSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAE 289
            +  G+ +   +   S     V     LT       H +  +    SP      +     
Sbjct: 25  NTPAGDKIQYCN-GTSVYTVPV---GSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHG 80

Query: 290 VLKLWDVETGICK--HTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKA 347
            +++WD          T       V   +W  +SKR+       E+   +   D      
Sbjct: 81  NVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNG 140

Query: 348 WRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKN 407
               +   +  +   P     I   SD +   +  G   +   +       +       +
Sbjct: 141 NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPD 200

Query: 408 FIVNLNSQEIHMW------DVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENS 461
             +  ++            D             +  +   +       DGT IAS S + 
Sbjct: 201 GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK 260

Query: 462 QIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGP 511
            I IWN    K  + +   +   +         + L S S +  I    P
Sbjct: 261 TIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 62.2 bits (149), Expect = 3e-11
 Identities = 29/244 (11%), Positives = 61/244 (25%), Gaps = 8/244 (3%)

Query: 273 VAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSD-T 331
           +  +P   K+  C    V     V +      + +H    +     P       G     
Sbjct: 23  LGNTPAGDKIQYCNGTSV-YTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGN 81

Query: 332 EKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVIS 391
            +                    P       +            +    + L        +
Sbjct: 82  VRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGN 141

Query: 392 EEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDG 451
                 +++      +    + S          +       +   ++   + S     DG
Sbjct: 142 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDG 201

Query: 452 TFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRP------KMLASASDDHT 505
           +  AS   +  I ++N  +     +    S+     S +            +ASAS D T
Sbjct: 202 SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT 261

Query: 506 IRIW 509
           I+IW
Sbjct: 262 IKIW 265

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 51.4 bits (121), Expect = 9e-08
 Identities = 15/64 (23%), Positives = 21/64 (32%), Gaps = 2/64 (3%)

Query: 450 DGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
            G  I   +  S +Y     +    EI + HS        +P      AS      +RIW
Sbjct: 28  AGDKIQYCNGTS-VYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGY-YCASGDVHGNVRIW 85

Query: 510 GPCQ 513
              Q
Sbjct: 86  DTTQ 89

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.3 bits (105), Expect = 9e-06
 Identities = 15/90 (16%), Positives = 34/90 (37%), Gaps = 4/90 (4%)

Query: 209 QIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQN 268
            +  +       H   V+ + +S +G  +AS+S+D +  IW V   + L ++ T+     
Sbjct: 225 GVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNV---ATLKVEKTIPVGTR 281

Query: 269 -PVSFVAWSPDDTKLLTCGNAEVLKLWDVE 297
                +        L++      +   + E
Sbjct: 282 IEDQQLGIIWTKQALVSISANGFINFVNPE 311

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.3 bits (183), Expect = 2e-15
 Identities = 36/350 (10%), Positives = 84/350 (24%), Gaps = 65/350 (18%)

Query: 218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP 277
           L  H   V          Y+ + + D    ++             L  H   V  + ++ 
Sbjct: 8   LRGHMTSVITC-LQFEDNYVITGADDKMIRVYDS---INKKFLLQLSGHDGGVWALKYAH 63

Query: 278 DDTKL-------------------------------------------LTCGNAEVLKLW 294
               +                                           +T      L +W
Sbjct: 64  GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 123

Query: 295 DVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIP 354
            +         G+            ++   V         +      GN + +       
Sbjct: 124 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTL 183

Query: 355 KVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNS 414
            V D+A       L          I +         S +  I    +      + +  ++
Sbjct: 184 IVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHT 243

Query: 415 QEIHMWDVAGKWE--------------KPFKYTGHSQNKYVIRSCFGGLDGTFIASGSEN 460
             + +  ++ K+                 +       +  +       +    + SGSEN
Sbjct: 244 ALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSEN 303

Query: 461 SQIYIWNRRNSKPI-EILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
               I+N R+ K +   +   +  +  V++  K   ++A+   D    + 
Sbjct: 304 Q-FNIYNLRSGKLVHANILKDADQIWSVNFKGKT--LVAAVEKDGQSFLE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.5 bits (160), Expect = 2e-12
 Identities = 34/254 (13%), Positives = 71/254 (27%), Gaps = 3/254 (1%)

Query: 260 KHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFP 319
           + TLR H   V       +D  ++T  + ++++++D            H   V +  +  
Sbjct: 5   RTTLRGHMTSV-ITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH 63

Query: 320 DSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRI 379
               LV GS+D    ++                  + LD+    + + +++   D  + +
Sbjct: 64  GG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV 122

Query: 380 LNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNK 439
             L   +      E     L      +N    +     HM  V             S + 
Sbjct: 123 WKLPKESSVPDHGEEHDYPLVFHTPEENPY-FVGVLRGHMASVRTVSGHGNIVVSGSYDN 181

Query: 440 YVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLAS 499
            +I      +   +I SG  +           K     S  +        N +    L  
Sbjct: 182 TLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG 241

Query: 500 ASDDHTIRIWGPCQ 513
            +    +       
Sbjct: 242 HTALVGLLRLSDKF 255

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 72.9 bits (177), Expect = 1e-14
 Identities = 34/325 (10%), Positives = 84/325 (25%), Gaps = 51/325 (15%)

Query: 228 VQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLL-TCG 286
                  EY+  ++   +  +   +    +     +     P +    +PD+        
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVD-VASDTVYKSCVMPDKFGPGT-AMMAPDNRTAYVLNN 59

Query: 287 NAEVLKLWDVETGICKH------TFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDC 340
           +   +   D++T             G+ G  + S A  PD K +    + T++       
Sbjct: 60  HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVV 119

Query: 341 DGNEIKAWRG--TRIPKVLDLAVTPDGENL------------------ISVLSDKDIRIL 380
               ++ +        K +     P    L                  + V + K    L
Sbjct: 120 KPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVAL 179

Query: 381 NLGTYAERVI----------------SEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAG 424
            L  +  +                        T      D ++             D+  
Sbjct: 180 PLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKT 239

Query: 425 KWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTV 484
                 ++   ++  +                G  N  +  ++ +  K I+  +    T 
Sbjct: 240 GKTHTQEFADLTELYFTGLRSP---KDPNQIYGVLNR-LAKYDLKQRKLIKAAN-LDHTY 294

Query: 485 NCVSWNPKRPKMLASASDDHTIRIW 509
            CV+++ K    L      + + ++
Sbjct: 295 YCVAFDKKG-DKLYLGGTFNDLAVF 318

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 54.0 bits (128), Expect = 2e-08
 Identities = 22/283 (7%), Positives = 64/283 (22%), Gaps = 40/283 (14%)

Query: 205 CGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIW---------KVLEDS 255
             ++        +  E    ++    S +G+ + ++ +    +           +V   +
Sbjct: 71  TCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTA 130

Query: 256 KLTLKHTLRSHQ--NPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVS 313
                  +R+      V  +  + D +  +   +       DV+TG          +   
Sbjct: 131 DGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDI---YKMDVKTGKYTVALPLRNW-NR 186

Query: 314 SCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLS 373
                PD        S                                  D ++  +   
Sbjct: 187 KGYSAPDVLYFWPHQSPR------------------HEFSMLYTIARFKDDKQDPATADL 228

Query: 374 DKDIRILNLGTYAERVISEEHPITSLSVSVDCKN--FIVNLNSQEIHMWDVAGKWEKPFK 431
                 ++L T                  +        +      +  +D+  +      
Sbjct: 229 LYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAA 288

Query: 432 YTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPI 474
              H+              G  +  G   + + ++N    + +
Sbjct: 289 NLDHT-----YYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV 326

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 45.1 bits (105), Expect = 1e-05
 Identities = 12/101 (11%), Positives = 22/101 (21%), Gaps = 5/101 (4%)

Query: 209 QIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQN 268
           +      Q   +     +    S           +  A         +  L         
Sbjct: 238 KTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDL----KQRKLIKAANLDHT 293

Query: 269 PVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHG 309
               VA+     KL   G    L +++ +T          G
Sbjct: 294 YYC-VAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPG 333

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 71.4 bits (173), Expect = 5e-14
 Identities = 27/315 (8%), Positives = 79/315 (25%), Gaps = 44/315 (13%)

Query: 236 YLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAE------ 289
           Y+   +   +     V++     +   +     P      + D + +             
Sbjct: 17  YVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPN--PVVADDGSFIAHASTVFSRIARG 74

Query: 290 ----VLKLWDVETGICKHTFGDH-------GFIVSSCAWFPDSKRLVCGSSDTEKGIFMC 338
                ++++D  T +               G      +  PD K L+         + + 
Sbjct: 75  ERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVV 134

Query: 339 DCDGNEIKAWRGTR-------IPKVLDLAVTPDGENLISVLSDKD-IRILNLGTYA---- 386
           D +G   K                        DG         +    I +   +     
Sbjct: 135 DLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDE 194

Query: 387 ---ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVI- 442
                    +     +  +   K   ++L+S +           +  +  G     +   
Sbjct: 195 FLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQV 254

Query: 443 -------RSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNP-KRP 494
                  R              + +  + + + +  + +         ++ ++ +  ++P
Sbjct: 255 AYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH-EIDSINVSQDEKP 313

Query: 495 KMLASASDDHTIRIW 509
            + A ++ D T+ I 
Sbjct: 314 LLYALSTGDKTLYIH 328

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 52.5 bits (124), Expect = 5e-08
 Identities = 29/278 (10%), Positives = 67/278 (24%), Gaps = 39/278 (14%)

Query: 223 NEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKH------TLRSHQNPVSFVAWS 276
              W    + +G+ L       +  +  V  + K   +              P +F    
Sbjct: 106 TYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHC 165

Query: 277 PDDTKLL-TCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGI 335
            D +      G     ++   E    +  F     +++  A+   + RLV  +   +   
Sbjct: 166 RDGSLAKVAFGTEGTPEITHTEVFHPEDEF-----LINHPAYSQKAGRLVWPTYTGKIHQ 220

Query: 336 FMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHP 395
                   +                  P G   ++     D   L               
Sbjct: 221 IDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYL--------------- 265

Query: 396 ITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGT--F 453
                +      +     S+ + + D            GH      I S     D     
Sbjct: 266 -----LVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHE-----IDSINVSQDEKPLL 315

Query: 454 IASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNP 491
            A  + +  +YI +  + + +  ++        ++   
Sbjct: 316 YALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD 353

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.4 bits (173), Expect = 5e-14
 Identities = 39/387 (10%), Positives = 95/387 (24%), Gaps = 94/387 (24%)

Query: 214 TVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKV-LEDSKLTLKHTLRSHQNPV-- 270
           T      H  +++ V   N+  +  S S D    +W   L D++     +     +    
Sbjct: 6   TANAGKAHDADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGL 63

Query: 271 -------SFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGD----------HGFIVS 313
                  +    + +   + T   +  L  + +                           
Sbjct: 64  HHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFW 123

Query: 314 SCAWFPDS-----KRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPK------------- 355
           +  W   +      RLV         I+      +E  +      P              
Sbjct: 124 ALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTP 183

Query: 356 ---VLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHP--------ITSLSVSVD 404
                 + ++  G  + +  ++  ++I  L T       E           I S+  S  
Sbjct: 184 SQFATSVDISERGL-IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ 242

Query: 405 CKNFIVNLNSQEIH---MWDVAGKWEKPFKYTGHSQNKYV---------IRSCFGGLDGT 452
                +  +S       +++                ++           + S      G 
Sbjct: 243 GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE 302

Query: 453 FIASGSENSQIYIWNRRNSKPIEILSGHSMTV----NCVSWNP----------------- 491
            + S   + ++  W+ +  + I  L+ H   +    + ++ +                  
Sbjct: 303 TLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLK 362

Query: 492 ---------KRPKMLASASDDHTIRIW 509
                       + L     D +IR +
Sbjct: 363 KGWRSGMGADLNESLCCVCLDRSIRWF 389

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.9 bits (130), Expect = 1e-08
 Identities = 39/316 (12%), Positives = 75/316 (23%), Gaps = 66/316 (20%)

Query: 257 LTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETG-----------ICKHTF 305
           +   +  ++H   +  V+        ++C     LK+WD +                H  
Sbjct: 4   IATANAGKAHDADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS 61

Query: 306 GDHGFIVSSCAWF--PDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIP--------K 355
           G H   V         +   +   S   +   +    +    K                 
Sbjct: 62  GLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHS 121

Query: 356 VLDLAVTPDGEN-----LISVLSDKDIRILNLGTYAER------------------VISE 392
              L      +      L++        I     +A+                       
Sbjct: 122 FWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPM 181

Query: 393 EHPITSLSVSVDCKNFIV---NLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGL 449
                + SV +  +  I    N  + +I                    N   IRS     
Sbjct: 182 TPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP 241

Query: 450 DGTFIASGSENSQIYIW----------------NRRNSKPIEILSGHSMTVNCVSWNPKR 493
            G+ +A   +++                        +S+       HS  V  +S+N   
Sbjct: 242 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG 301

Query: 494 PKMLASASDDHTIRIW 509
             +  SA  D  +R W
Sbjct: 302 ETL-CSAGWDGKLRFW 316

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.5 bits (116), Expect = 5e-07
 Identities = 30/195 (15%), Positives = 52/195 (26%), Gaps = 36/195 (18%)

Query: 203 HCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKV----------- 251
               R     E+   +  + N +  V+FS  G  LA +    S     +           
Sbjct: 212 LSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGS 271

Query: 252 --LEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHG 309
             +            +H + V  ++++     L + G    L+ WDV+T     T   H 
Sbjct: 272 LSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHC 331

Query: 310 ----FIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAV-TPD 364
                     A       L                       +    + K     +    
Sbjct: 332 DDIEIEEDILAVDEHGDSLAEPGV------------------FDVKFLKKGWRSGMGADL 373

Query: 365 GENLISVLSDKDIRI 379
            E+L  V  D+ IR 
Sbjct: 374 NESLCCVCLDRSIRW 388

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 68.3 bits (165), Expect = 4e-13
 Identities = 30/308 (9%), Positives = 77/308 (25%), Gaps = 36/308 (11%)

Query: 235 EYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNA-EVLKL 293
           +Y+ + +     ++    E   +    T+            +P         N  E L  
Sbjct: 2   DYILAPARPDKLVVID-TEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60

Query: 294 WDVETGICK-----HTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIK-- 346
            D+ TG         T  +    +   A  PD K L    S     +   +     +   
Sbjct: 61  IDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALY 120

Query: 347 -------AWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSL 399
                          ++  LA   DG  L  +  D  +     GT  E    +     + 
Sbjct: 121 DAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETY 180

Query: 400 SVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHS---------QNKYVIRSCFGGLD 450
           +       +  + +S  +       + +                  +   +       +D
Sbjct: 181 AQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMD 240

Query: 451 GTFIASGS---------ENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS 501
             + ++             + +  ++   +  I+ +     +   V+ +      +    
Sbjct: 241 VFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRV-PLPHSYYSVNVSTDG-STVWLGG 298

Query: 502 DDHTIRIW 509
               +  +
Sbjct: 299 ALGDLAAY 306

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 51.3 bits (121), Expect = 1e-07
 Identities = 30/306 (9%), Positives = 68/306 (22%), Gaps = 39/306 (12%)

Query: 218 LTEHKNEVWFVQFSNNGEYL-ASSSSDCSAIIWKV--LEDSKLTLKHTLRSHQNPVSFVA 274
           + +          +  G    A+ +   S +   +   E        T       +   A
Sbjct: 29  IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAA 88

Query: 275 WSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGF-----------IVSSCAWFPDSKR 323
            SPD   L    +   L+L   E    +    D               ++  AW  D  +
Sbjct: 89  LSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSK 148

Query: 324 LVCGSSDTEKGIFMCDCDGNEIK-------------------AWRGTRIPKVLDLAVTPD 364
           L     D             +                         + +          D
Sbjct: 149 LYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKD 208

Query: 365 GENLISVLSDKDIRILNLGT-YAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVA 423
            +          +  ++L T            +   S +V+            +  +D+ 
Sbjct: 209 IDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLE 268

Query: 424 GKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMT 483
                      HS     + +     DG+ +  G     +  ++    +    +      
Sbjct: 269 KNASIKRVPLPHSYYSVNVST-----DGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNA 323

Query: 484 VNCVSW 489
              ++ 
Sbjct: 324 SMSLAS 329

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 50.2 bits (118), Expect = 3e-07
 Identities = 25/220 (11%), Positives = 48/220 (21%), Gaps = 24/220 (10%)

Query: 187 SCQYHNSSVAISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSA 246
                   +     +          T + +   E   ++  + ++ +G  L     D   
Sbjct: 99  YESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHV 158

Query: 247 IIWK------------------VLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNA 288
           +  +                     D          S      F     D          
Sbjct: 159 MDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYR 218

Query: 289 EVLKLWDVETGICKHT-FGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKA 347
             L   D+ETG               S A  P   R     +     +   D + N    
Sbjct: 219 TGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNV----LESFDLEKNASIK 274

Query: 348 WRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAE 387
                      + V+ DG  +    +  D+   +  T  +
Sbjct: 275 RVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK 313

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.4 bits (103), Expect = 2e-05
 Identities = 17/133 (12%), Positives = 34/133 (25%), Gaps = 4/133 (3%)

Query: 185 IDSCQYHNSSVAISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDC 244
                  +   A             + T  + +      +V++   + N     +  +  
Sbjct: 201 PFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYN 260

Query: 245 SAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHT 304
               + +    K      +    +    V  S D + +   G    L  +D ET   K  
Sbjct: 261 VLESFDL---EKNASIKRV-PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQ 316

Query: 305 FGDHGFIVSSCAW 317
               G    S A 
Sbjct: 317 VDLPGNASMSLAS 329

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 53.3 bits (126), Expect = 2e-08
 Identities = 30/273 (10%), Positives = 73/273 (26%), Gaps = 10/273 (3%)

Query: 239 SSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLL-TCGNAEVLKLWDVE 297
           ++S   +  +  V   +   +  T+    NP+     SPD TK+     ++  + + D  
Sbjct: 7   ANSESDNISVIDV---TSNKVTATIPVGSNPMG-AVISPDGTKVYVANAHSNDVSIIDTA 62

Query: 298 TGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVL 357
           T              S               ++            +   A         L
Sbjct: 63  TNNVIA---TVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPL 119

Query: 358 DLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDC-KNFIVNLNSQE 416
            LA++PDG+ L    +      +        + +     +   ++V      +   N   
Sbjct: 120 GLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDS 179

Query: 417 IHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEI 476
           + +  +                   I     G            + + + +   +K    
Sbjct: 180 MSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITAR 239

Query: 477 LSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
           +         ++  P   K+  + S  +T+ + 
Sbjct: 240 IPVGP-DPAGIAVTPDGKKVYVALSFCNTVSVI 271

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 43.3 bits (100), Expect = 4e-05
 Identities = 13/119 (10%), Positives = 36/119 (30%), Gaps = 2/119 (1%)

Query: 188 CQYHNSSVAISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAI 247
                + V ++ ++          T +V    + +     +  +  G     ++ D    
Sbjct: 165 VTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFN 224

Query: 248 IWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLL-TCGNAEVLKLWDVETGICKHTF 305
              +++     +   +    +P   +A +PD  K+         + + D  T     T 
Sbjct: 225 TVSMIDTGTNKITARIPVGPDPAG-IAVTPDGKKVYVALSFCNTVSVIDTATNTITATM 282

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 53.4 bits (127), Expect = 3e-08
 Identities = 34/340 (10%), Positives = 85/340 (25%), Gaps = 41/340 (12%)

Query: 206 GRDQIPTETVQILTEHKNEVWFVQFSNNGEYLAS-SSSDCSAIIWKVLEDSKLTLKHTLR 264
           G  ++  E+ ++L + ++         +   L S +  D   I   +++     +   + 
Sbjct: 3   GMPEM-RESWKVLVKPEDRPKKQLNDLDLPNLFSVTLRDAGQI--ALVDGDSKKIVKVID 59

Query: 265 SHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHT-----FGDHGFIVSSCAWFP 319
           +          S     LL  G    + + D+               +   + SS     
Sbjct: 60  TGYAVHI-SRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGY 118

Query: 320 DSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSD----- 374
           + +  + G+        + D +  E K    TR   V      P+      + S      
Sbjct: 119 EDRYTIAGAYWP-PQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEF 177

Query: 375 ----------KDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIV--NLNSQEIHMWDV 422
                       +   ++       I     +         + F+   N +++   +   
Sbjct: 178 IVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSK 237

Query: 423 AGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWN-------RRNSKPIE 475
             +                           +  S   +  I +         +   K + 
Sbjct: 238 DRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVA 297

Query: 476 ILSGHSMTVNCVSWNPKRP------KMLASASDDHTIRIW 509
            L G       +  +PK             A    ++ ++
Sbjct: 298 ELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVF 337

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 52.9 bits (125), Expect = 3e-08
 Identities = 38/299 (12%), Positives = 78/299 (26%), Gaps = 27/299 (9%)

Query: 236 YLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAE-VLKLW 294
           Y+AS  S     +W +  +  LTL   +      V  +  SPD   L      E  +  +
Sbjct: 7   YIASPESQ-QIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAY 64

Query: 295 DVETGICKHTFGDHGFIVSS---CAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGT 351
            +       TF     +  S    +     + +  GS +          DG  +      
Sbjct: 65  RIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV 124

Query: 352 RIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIV- 410
                   A        + V + K  RI       +  +  + P    +V       +V 
Sbjct: 125 EGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVF 184

Query: 411 -----------------NLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTF 453
                            ++   +    ++             S  ++             
Sbjct: 185 HPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHL 244

Query: 454 IASGSENSQIYIWNRRNSKPIEILSGHSMTVNC---VSWNPKRPKMLASASDDHTIRIW 509
            A     S I +++      +    G   T       + +     ++A+    H I ++
Sbjct: 245 YACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVY 303

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 39.8 bits (91), Expect = 5e-04
 Identities = 8/60 (13%), Positives = 22/60 (36%), Gaps = 2/60 (3%)

Query: 452 TFIASGSENSQIYIWNRRNSKPIEILS--GHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
           T   +  E+ QI++WN  +   + +         V  +  +P +  +      +  +  +
Sbjct: 5   TVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAY 64

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 53.1 bits (126), Expect = 4e-08
 Identities = 21/230 (9%), Positives = 50/230 (21%), Gaps = 29/230 (12%)

Query: 219 TEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHT-----LRSHQNPVSFV 273
                 V  +    +   L       SA     +  +                    +  
Sbjct: 120 FSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHY 179

Query: 274 AWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAW-------FPDSKRLVC 326
             S   +   +   A       V         G       +          +  +  ++ 
Sbjct: 180 LGSCPASLAASDLAAAPAAAGIVGA----QCTGAQNCSSQAAQANYPGMLVWAVASSILQ 235

Query: 327 GSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKD---------- 376
           G             DGNE              +       + I +L+ +           
Sbjct: 236 GDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAEN 295

Query: 377 IRILNLGTYAE-RVISEEHPITSLSVSVDCKN--FIVNLNSQEIHMWDVA 423
              +          IS  H   ++  + D  +  +  +  ++ + ++D A
Sbjct: 296 TSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAA 345

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 52.3 bits (124), Expect = 7e-08
 Identities = 14/185 (7%), Positives = 36/185 (19%), Gaps = 25/185 (13%)

Query: 221 HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDT 280
                     S      AS  +   A    V             +          +    
Sbjct: 172 PGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQ-------CTGAQNCSSQAAQANYPGM 224

Query: 281 KLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDT-------EK 333
            +    ++ +           K     +     +  +     ++V    +T        +
Sbjct: 225 LVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVE 284

Query: 334 GIFMCDCDGNEIKAW------RGTRIPK---VLDLAVTPDGENLISVLS--DKDIRILNL 382
               C        +           I        +    DG +     S   + + I + 
Sbjct: 285 HSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDA 344

Query: 383 GTYAE 387
            +  +
Sbjct: 345 ASDQD 349

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.6 bits (91), Expect = 7e-04
 Identities = 16/180 (8%), Positives = 44/180 (24%), Gaps = 34/180 (18%)

Query: 214 TVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFV 273
             Q            Q +  G  + + +S            +  T+K  +  +++     
Sbjct: 203 GAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDI---PAAGATMKAAIDGNESGRKAD 259

Query: 274 AWSPDDTKLLT-------------------CGNAEVLKLWDVETGICKHTFGDHGFIVSS 314
            +     +++                       AE         G        +G    +
Sbjct: 260 NFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPI-SNGHDSDA 318

Query: 315 CAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSD 374
                D       +S   + + + D   ++ ++     +           G   +SV ++
Sbjct: 319 IIAAQDGASDNYANSAGTEVLDIYDAASDQDQS----SVE-------LDKGPESLSVQNE 367

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.8 bits (105), Expect = 2e-05
 Identities = 32/153 (20%), Positives = 57/153 (37%), Gaps = 5/153 (3%)

Query: 362 TPDGENLISV-LSDKD-IRILNLGTYAE-RVISEEHPITSLSVSVDCKNFIVNLNSQEIH 418
             D ENL SV L D   I +++  TY    V+   + +    +S   +   V     +++
Sbjct: 27  DWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVN 86

Query: 419 MWDVA-GKWEKPFKYTGHSQNKYVIRSCFGGLDG-TFIASGSENSQIYIWNRRNSKPIEI 476
           M D+   +     +    S+ + +  S   G +    IA      Q  I +    +P +I
Sbjct: 87  MIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKI 146

Query: 477 LSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
            S   MT +   ++P+       AS      I 
Sbjct: 147 QSTRGMTYDEQEYHPEPRVAAILASHYRPEFIV 179

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.9 bits (95), Expect = 3e-04
 Identities = 29/275 (10%), Positives = 66/275 (24%), Gaps = 46/275 (16%)

Query: 251 VLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKH-----TF 305
           +++ S   +K  L +          S     L   G    + + D+              
Sbjct: 46  LIDGSTYEIKTVLDTGYAVHI-SRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG 104

Query: 306 GDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDG 365
            +   I +S     + K  + G+    + + M D +  E K  + TR     +    P+ 
Sbjct: 105 SEARSIETSKMEGWEDKYAIAGAYWPPQYVIM-DGETLEPKKIQSTRGMTYDEQEYHPEP 163

Query: 366 ENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNL-NSQEIHMWDVAG 424
                                         + ++  S     FIVN+  + +I + D   
Sbjct: 164 -----------------------------RVAAILASHYRPEFIVNVKETGKILLVDYTD 194

Query: 425 KWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTV 484
                       +    +          +  + +      +        +  +       
Sbjct: 195 LNNLKTTEISAER---FLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQT 251

Query: 485 NCVSWNPK------RPKMLASASDDHTIRIWGPCQ 513
                          P    S   D ++ + G   
Sbjct: 252 PHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDP 286

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Length = 302

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 15/156 (9%), Positives = 42/156 (26%), Gaps = 1/156 (0%)

Query: 358 DLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEI 417
           +LA  PDG   ++     +I  +      +   + E  ++ L+ + +        N+  I
Sbjct: 32  NLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSI 91

Query: 418 HMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEIL 477
            +  +                 ++        D  ++ + S    I++ +         L
Sbjct: 92  PVVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWL 150

Query: 478 SGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ 513
               +  +           L    +   +       
Sbjct: 151 EHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKML 186

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 281

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 40.5 bits (93), Expect = 3e-04
 Identities = 21/241 (8%), Positives = 63/241 (26%), Gaps = 22/241 (9%)

Query: 210 IPTETVQILTEHKNEVWFVQFSNNGEYLASSS----SDCSAIIWKVLEDSK-----LTLK 260
           + + + + +  +   +   +F  +G  +A       S  +A ++    ++          
Sbjct: 28  LKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFS 87

Query: 261 HTLRSHQNPVSFVAWSPDDTKLLT--CGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWF 318
                 +       + PD   +++                      F       ++   F
Sbjct: 88  GKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILF 147

Query: 319 PDSKRLV----------CGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENL 368
            D +R++           G     +G    + +    K            + V      +
Sbjct: 148 ADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFI 207

Query: 369 ISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEK 428
             +     I   +L     R  +         ++ D    I+      I++++   +  +
Sbjct: 208 TDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTD-GRRILFSKGGSIYIFNPDTEKIE 266

Query: 429 P 429
            
Sbjct: 267 K 267

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 470

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 35/322 (10%), Positives = 82/322 (25%), Gaps = 37/322 (11%)

Query: 228 VQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGN 287
           +++ ++ EYL    ++      +    S      T     + ++  + SPD   +L   N
Sbjct: 22  LRWISDHEYLYKQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYN 81

Query: 288 AE---------VLKLWDVETGICKHTF------------GDHGFIVSSCAWFPDSKRLVC 326
                         ++D+                          +          K    
Sbjct: 82  YVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPN 141

Query: 327 GSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAV--TPDGENLISVLSD----KDIRIL 380
             S         D   N I  W           A+  +P+G  L     +      I   
Sbjct: 142 LPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYS 201

Query: 381 NLGTYAERVISEEHPITSL--SVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQN 438
                + +             +V+   K F+VN +S        + +   P   +    +
Sbjct: 202 FYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAP--ASMLIGD 259

Query: 439 KYVIRSCFGGLDG-----TFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSW-NPK 492
            Y+    +   +                 I  ++  + +   +++   + ++   W    
Sbjct: 260 HYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRF 319

Query: 493 RPKMLASASDDHTIRIWGPCQS 514
           RP       D ++       + 
Sbjct: 320 RPSEPHFTLDGNSFYKIISNEE 341

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	517
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.98
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.98
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.96
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.96
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.95
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.95
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.94
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.93
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.93
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.92
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.91
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.9
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.88
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.86
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.86
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.85
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.82
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.8
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.78
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.77
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.74
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.64
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.63
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.58
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.56
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.48
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.41
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.38
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.33
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.33
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.3
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.29
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.28
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.27
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.25
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.24
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.19
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.14
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.12
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.12
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.06
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.05
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.01
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.93
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.67
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.63
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.42
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	98.3
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.18
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.15
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.01
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	98.0
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.97
d1uuja_	76	Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te	97.97
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.76
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.71
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.59
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.43
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.41
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.41
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.21
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.2
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.01
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.78
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.75
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	96.65
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.65
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.47
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.06
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.97
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.89
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.83
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	95.27
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	95.0
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	94.96
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	94.84
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	94.02
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	93.94
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	91.39
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	90.45
d1wp5a_	323	Topoisomerase IV subunit A, ParC, C-terminal domai	88.63
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	86.3
d1wp5a_	323	Topoisomerase IV subunit A, ParC, C-terminal domai	83.63

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-43  Score=330.01  Aligned_cols=288  Identities=17%  Similarity=0.184  Sum_probs=250.3

Q ss_pred             ccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeee--EEEEeccCCCCEEEEEECCCCCeEEEEeCCCe
Q 042434          213 ETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLT--LKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEV  290 (517)
Q Consensus       213 ~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~--~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~  290 (517)
                      +.+..+ +|...|+|++|+|+|++||+|+ ||.|+|||+..+....  ......+|.+.|.+++|+|++++|++|+.||.
T Consensus        43 ~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~  120 (337)
T d1gxra_          43 RQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST  120 (337)
T ss_dssp             EEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSE
T ss_pred             eEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccc
Confidence            344455 7999999999999999999987 8999999997654322  33345679999999999999999999999999


Q ss_pred             EEEEECCCC--cEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEE
Q 042434          291 LKLWDVETG--ICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENL  368 (517)
Q Consensus       291 i~iwd~~~~--~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  368 (517)
                      |++||+...  +....+..|...+.+++|+|++..+++++.|+.  +..|+..+.........+...+.+++|++++..+
T Consensus       121 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~--i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~  198 (337)
T d1gxra_         121 LSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGN--IAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKL  198 (337)
T ss_dssp             EEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSC--EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccc
Confidence            999998754  456677789999999999999999999999999  8889988777666666666789999999999999


Q ss_pred             EEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecC
Q 042434          369 ISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFG  447 (517)
Q Consensus       369 ~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~  447 (517)
                      ++++.|+.+++||+++++ .....+...+.+++|+|+++.+++++.|+.+++||++...  ......|...   +..+.|
T Consensus       199 ~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~---i~~v~~  273 (337)
T d1gxra_         199 WTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD--KYQLHLHESC---VLSLKF  273 (337)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC--EEEECCCSSC---EEEEEE
T ss_pred             ccccccccccccccccceeecccccccceEEEEEcccccccceeccccccccccccccc--cccccccccc---cceEEE
Confidence            999999999999999887 5566788899999999999999999999999999998752  2344455554   566677


Q ss_pred             CCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCC
Q 042434          448 GLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGP  511 (517)
Q Consensus       448 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~  511 (517)
                      +|++++|++|+.||.|++||+.+++.+..+. |.+.|++++|+|++ .+|++|+.||+|+|||+
T Consensus       274 s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~d~-~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         274 AYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDD-KYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECTTS-CEEEEEETTSCEEEEEE
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-CCCCEEEEEEeCCC-CEEEEEeCCCeEEEEEE
Confidence            9999999999999999999999999988875 78999999999999 79999999999999986

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.5e-42  Score=318.50  Aligned_cols=289  Identities=21%  Similarity=0.356  Sum_probs=256.0

Q ss_pred             cccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeE
Q 042434          212 TETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVL  291 (517)
Q Consensus       212 ~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i  291 (517)
                      .....+|+||.++|++++|+|++++||||+.||+|+|||+.++.   ...++.+|...|.+++|+|++.++++++.++.+
T Consensus         7 ~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~---~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~   83 (317)
T d1vyhc1           7 PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD---FERTLKGHTDSVQDISFDHSGKLLASCSADMTI   83 (317)
T ss_dssp             SSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC---CCEEECCCSSCEEEEEECTTSSEEEEEETTSCC
T ss_pred             CCccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC---EEEEEeCCCCcEEEEeeeccccccccccccccc
Confidence            34456799999999999999999999999999999999997663   457788999999999999999999999999999


Q ss_pred             EEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEE
Q 042434          292 KLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISV  371 (517)
Q Consensus       292 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  371 (517)
                      .+|+....+....+..|...+.++.|+|++..+++++.|+.  +.+|+............+...+.++++++++.+++++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  161 (317)
T d1vyhc1          84 KLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKT--IKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASC  161 (317)
T ss_dssp             CEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSE--EEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             ccccccccccccccccccccceeeeccCCCceEEeeccCcc--eeEeecccceeeeEEccCCCcceeeecccCCCEEEEE
Confidence            99999999998888899999999999999999999999999  7888887544433333444689999999999999999


Q ss_pred             eCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCC--------------------CEEEEEeCCCeEEEEEcCCCCccc
Q 042434          372 LSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDC--------------------KNFIVNLNSQEIHMWDVAGKWEKP  429 (517)
Q Consensus       372 ~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~--------------------~~l~~~~~d~~i~~~d~~~~~~~~  429 (517)
                      +.|+.|++|+..+..  .....+...+.++.++|++                    ..+++++.|+.|++||++++ ...
T Consensus       162 ~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~-~~~  240 (317)
T d1vyhc1         162 SNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG-MCL  240 (317)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT-EEE
T ss_pred             eCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCC-cEE
Confidence            999999999998877  4445667788888888754                    46889999999999999887 677


Q ss_pred             eEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEe
Q 042434          430 FKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW  509 (517)
Q Consensus       430 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw  509 (517)
                      ..+.+|...   +..+.++|++++|++|+.||.|++||+.+++++.++.+|.+.|++++|+|++ .+|+||+.||+|+||
T Consensus       241 ~~~~~~~~~---v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~-~~l~s~s~Dg~i~iW  316 (317)
T d1vyhc1         241 MTLVGHDNW---VRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTA-PYVVTGSVDQTVKVW  316 (317)
T ss_dssp             EEEECCSSC---EEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSS-SCEEEEETTSEEEEE
T ss_pred             EEEeCCCCC---EEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCeEEEe
Confidence            778887765   5566679999999999999999999999999999999999999999999999 799999999999999


Q ss_pred             C
Q 042434          510 G  510 (517)
Q Consensus       510 ~  510 (517)
                      |
T Consensus       317 d  317 (317)
T d1vyhc1         317 E  317 (317)
T ss_dssp             C
T ss_pred             C
Confidence            7

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.6e-41  Score=321.59  Aligned_cols=287  Identities=22%  Similarity=0.373  Sum_probs=235.7

Q ss_pred             ccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEE---------------EEeccCCCCEEEEEECCCCCeEE
Q 042434          219 TEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLK---------------HTLRSHQNPVSFVAWSPDDTKLL  283 (517)
Q Consensus       219 ~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~---------------~~~~~h~~~v~~l~~s~~~~~l~  283 (517)
                      .+|++.|+|++|||||++||+|+ |++|+|||+.++......               .....|...|++++|+|++++|+
T Consensus        59 ~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~  137 (388)
T d1erja_          59 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA  137 (388)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred             CCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcce
Confidence            46999999999999999999986 899999999766432111               12235778899999999999999


Q ss_pred             EEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEcc
Q 042434          284 TCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTP  363 (517)
Q Consensus       284 s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~  363 (517)
                      +|+.||.|++||..+++.+..+.+|...|.++.|++++..+++++.++.  +.+|+............+...+....+.+
T Consensus       138 s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  215 (388)
T d1erja_         138 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRT--VRIWDLRTGQCSLTLSIEDGVTTVAVSPG  215 (388)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE--EEEEETTTTEEEEEEECSSCEEEEEECST
T ss_pred             eccccccccccccccccccccccccccccccccccccccccccccccee--eeeeeccccccccccccccccccccccCC
Confidence            9999999999999999999999999999999999999999999999999  88889887666555555543444444455


Q ss_pred             CCCEEEEEeCCCcEEEEECCCceEE---------eeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcc------
Q 042434          364 DGENLISVLSDKDIRILNLGTYAER---------VISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEK------  428 (517)
Q Consensus       364 ~~~~l~~~~~dg~i~i~d~~~~~~~---------~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~------  428 (517)
                      +++++++++.||.|++||..+....         ...+...|.+++|+|+++++++++.|+.|++||++.....      
T Consensus       216 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  295 (388)
T d1erja_         216 DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP  295 (388)
T ss_dssp             TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------------
T ss_pred             CCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccc
Confidence            8899999999999999999876621         1245678999999999999999999999999999754221      


Q ss_pred             -----ceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEe------cCCCCcEE
Q 042434          429 -----PFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSW------NPKRPKML  497 (517)
Q Consensus       429 -----~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~------~~~~~~~l  497 (517)
                           ......|...   +.++.++|++++|++|+.||.|++||+.+++++.++.+|.+.|+++++      +|++ .+|
T Consensus       296 ~~~~~~~~~~~~~~~---v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~-~~l  371 (388)
T d1erja_         296 NSGTCEVTYIGHKDF---VLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEY-NVF  371 (388)
T ss_dssp             ---CEEEEEECCSSC---EEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTC-EEE
T ss_pred             cccceeeecccccce---EEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCC-CEE
Confidence                 1222233333   566677999999999999999999999999999999999999999975      6788 799


Q ss_pred             EEeeCCCcEEEeCCC
Q 042434          498 ASASDDHTIRIWGPC  512 (517)
Q Consensus       498 ~s~~~dg~v~iw~~~  512 (517)
                      +|||.||+|+||+++
T Consensus       372 ~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         372 ATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEEETTSEEEEEEEE
T ss_pred             EEEeCCCEEEEEeee
Confidence            999999999999984

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.3e-40  Score=309.47  Aligned_cols=292  Identities=18%  Similarity=0.327  Sum_probs=245.8

Q ss_pred             CCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCC
Q 042434          210 IPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAE  289 (517)
Q Consensus       210 ~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg  289 (517)
                      ...+..++|+||.+.|++++|+|++++||||+.||+|+|||+.++   .....+..|..+|.+++|+|+++++++|+.|+
T Consensus        43 ~~~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~---~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~  119 (340)
T d1tbga_          43 IQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTT---NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDN  119 (340)
T ss_dssp             CCCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTT---EEEEEEECSCSCEEEEEECTTSSEEEEEETTC
T ss_pred             cceeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccc---eeEEEEecccccEEeeEeeccceeeeeecccc
Confidence            335677899999999999999999999999999999999999766   55677889999999999999999999999999


Q ss_pred             eEEEEECCCC----cEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCC
Q 042434          290 VLKLWDVETG----ICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDG  365 (517)
Q Consensus       290 ~i~iwd~~~~----~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  365 (517)
                      .+++|+....    .....+.+|.......... .+..+.....+..  ...+.................+....+.+.+
T Consensus       120 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (340)
T d1tbga_         120 ICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL-DDNQIVTSSGDTT--CALWDIETGQQTTTFTGHTGDVMSLSLAPDT  196 (340)
T ss_dssp             CEEEEESSSSCSCCCEEEEECCCSSCEEEEEEE-ETTEEEEEETTTE--EEEEETTTTEEEEEEECCSSCEEEEEECTTS
T ss_pred             eeecccccccccccccceecccccccccccccc-ccccccccccccc--ccccccccccccccccccceeEeeecccccc
Confidence            9999997654    3455666777666655554 4556777777777  6666666655555555555688999999999


Q ss_pred             CEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEE
Q 042434          366 ENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIR  443 (517)
Q Consensus       366 ~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~  443 (517)
                      ..+++++.|+.|++||++++.  .....+...|.+++|+|+++++++++.|+.|++||++.. .....+.... ....+.
T Consensus       197 ~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~-~~~~~~~~~~-~~~~i~  274 (340)
T d1tbga_         197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD-QELMTYSHDN-IICGIT  274 (340)
T ss_dssp             SEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCTT-CCSCEE
T ss_pred             ceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccc-cccccccccc-ccCceE
Confidence            999999999999999999887  445567889999999999999999999999999999876 3333333222 222366


Q ss_pred             eecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeC
Q 042434          444 SCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWG  510 (517)
Q Consensus       444 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~  510 (517)
                      .+.++|++++|++|+.||.|++||+.+++++.++.+|.++|++++|+|++ .+|+|||.||+|+|||
T Consensus       275 ~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~-~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         275 SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG-MAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-SCEEEEETTSCEEEEC
T ss_pred             EEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCC-CEEEEEccCCEEEEeC
Confidence            66779999999999999999999999999999999999999999999999 6899999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.4e-39  Score=301.73  Aligned_cols=282  Identities=16%  Similarity=0.142  Sum_probs=228.8

Q ss_pred             cccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCC
Q 042434          220 EHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETG  299 (517)
Q Consensus       220 ~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~  299 (517)
                      .+.+.+.+++++|+|+.||.++ ++.|.+|++.+..   ....+.+|.+.|++++|+|+|++||+|+.||+|++||+.++
T Consensus        15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~---~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~   90 (311)
T d1nr0a1          15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLT---DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQT   90 (311)
T ss_dssp             CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSS---CCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSST
T ss_pred             CCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCc---eeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecc
Confidence            3556677899999999999986 5679999997653   33567899999999999999999999999999999999887


Q ss_pred             cEE--EEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCE-EEEEeCCCc
Q 042434          300 ICK--HTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGEN-LISVLSDKD  376 (517)
Q Consensus       300 ~~~--~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~  376 (517)
                      ...  ..+..|..+|.+++|+|+++++++++.+....+.+|+............+...|.+++|+|++++ +++|+.|+.
T Consensus        91 ~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~  170 (311)
T d1nr0a1          91 THILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNT  170 (311)
T ss_dssp             TCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSC
T ss_pred             ccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeecccccccc
Confidence            643  55778999999999999999999998754433566666543333333344568999999999885 788999999


Q ss_pred             EEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEe-------CcccCceEEEeecC
Q 042434          377 IRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYT-------GHSQNKYVIRSCFG  447 (517)
Q Consensus       377 i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-------~~~~~~~~i~~~~~  447 (517)
                      |++||+++.+  .....+..+|.++.++|+++++++++.|+.|++||.... .....+.       +|...   +.++.|
T Consensus       171 i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~-~~~~~~~~~~~~~~~h~~~---V~~~~~  246 (311)
T d1nr0a1         171 VAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG-TKTGVFEDDSLKNVAHSGS---VFGLTW  246 (311)
T ss_dssp             EEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEEECBCTTSSSCSSSSC---EEEEEE
T ss_pred             cccccccccccccccccccccccccccCccccccccccccccccccccccc-ccccccccccccccccccc---cccccc
Confidence            9999999887  444567789999999999999999999999999999775 3333322       33333   666777


Q ss_pred             CCCCcEEEEecCCCcEEEEecCCCceeEEecCCCC---CeeEEEecCCCCcEEEEeeCCCcEEEeCCC
Q 042434          448 GLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSM---TVNCVSWNPKRPKMLASASDDHTIRIWGPC  512 (517)
Q Consensus       448 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~---~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~  512 (517)
                      +|++++|++|+.||.|+|||+++++++.++..|..   .+.++.|++   ..+++++.||.|++||++
T Consensus       247 s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~---~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         247 SPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK---QALVSISANGFINFVNPE  311 (311)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECS---SCEEEEETTCCEEEEETT
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecC---CEEEEEECCCEEEEEeCC
Confidence            99999999999999999999999999999987643   445566654   358999999999999974

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.2e-38  Score=303.77  Aligned_cols=287  Identities=16%  Similarity=0.187  Sum_probs=231.4

Q ss_pred             ccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc
Q 042434          221 HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI  300 (517)
Q Consensus       221 h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~  300 (517)
                      +..+|+|++|+|+|++||+|+.||.|+||+..++ +......+.+|.++|.+++|+|++++|++|+.|++|++||+.++.
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~-~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~   84 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGN-KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT   84 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETT-EEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCC-CEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccc
Confidence            4578999999999999999999999999999754 446678889999999999999999999999999999999998776


Q ss_pred             EE--EEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCee--EeeeCcCCCceEEEEEccCCCEEEEEeCCCc
Q 042434          301 CK--HTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEI--KAWRGTRIPKVLDLAVTPDGENLISVLSDKD  376 (517)
Q Consensus       301 ~~--~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  376 (517)
                      ..  ..+..|...|.+++|+|+++.|++++.|+.+++|.++......  ......+...|.+++|+|+++++++|+.|+.
T Consensus        85 ~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~  164 (371)
T d1k8kc_          85 WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK  164 (371)
T ss_dssp             EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcE
Confidence            44  4456788999999999999999999999997787777665432  3334445568999999999999999999999


Q ss_pred             EEEEECCCce--------------------EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcc
Q 042434          377 IRILNLGTYA--------------------ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHS  436 (517)
Q Consensus       377 i~i~d~~~~~--------------------~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~  436 (517)
                      +++||.....                    .....+...+.+++|+|+++.+++++.|+.|++||+... .....+..|.
T Consensus       165 v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~  243 (371)
T d1k8kc_         165 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK-MAVATLASET  243 (371)
T ss_dssp             EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT-TEEEEEECSS
T ss_pred             EEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecc-cceeeeeccc
Confidence            9999985432                    122345667999999999999999999999999999876 5666777776


Q ss_pred             cCceEEEeecCCCCCcEEEEecCCCcEEEEecCC--CceeE---------------------------------------
Q 042434          437 QNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRN--SKPIE---------------------------------------  475 (517)
Q Consensus       437 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~--~~~~~---------------------------------------  475 (517)
                      ..   +.++.|+|++++|++|+ |+.+++|....  +....                                       
T Consensus       244 ~~---v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (371)
T d1k8kc_         244 LP---LLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAG  319 (371)
T ss_dssp             CC---EEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CC
T ss_pred             cc---ceeeeecCCCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccce
Confidence            65   55666789999888766 66666654332  21100                                       


Q ss_pred             EecCCCCCeeEEEecCCCC---cEEEEeeCCCcEEEeCCCC
Q 042434          476 ILSGHSMTVNCVSWNPKRP---KMLASASDDHTIRIWGPCQ  513 (517)
Q Consensus       476 ~~~~h~~~v~~v~~~~~~~---~~l~s~~~dg~v~iw~~~~  513 (517)
                      ....|.+.|+++++.|.+.   ..++|+|.||.|+||++++
T Consensus       320 ~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~  360 (371)
T d1k8kc_         320 LDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  360 (371)
T ss_dssp             CSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             ecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence            0013888999999977542   3689999999999999854

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.2e-38  Score=292.63  Aligned_cols=285  Identities=17%  Similarity=0.189  Sum_probs=223.7

Q ss_pred             cccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEe-ccCCCCEEEEEECCCCCeEEEEeCCCe
Q 042434          212 TETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTL-RSHQNPVSFVAWSPDDTKLLTCGNAEV  290 (517)
Q Consensus       212 ~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~-~~h~~~v~~l~~s~~~~~l~s~~~dg~  290 (517)
                      +...+++.||.++|++++|+|+|++||+|+.||+|++||+.++.   ....+ .+|...|++++|+|++. +++++.|+.
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~---~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~   77 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI---SNRVFPDVHATMITGIKTTSKGD-LFTVSWDDH   77 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC---EEECSSCSCSSCEEEEEECTTSC-EEEEETTTE
T ss_pred             CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCc---EEEEEcCCCCCcEEEEEeeccce-eecccceee
Confidence            35678999999999999999999999999999999999997663   33444 46899999999999986 556678999


Q ss_pred             EEEEECCCCcEE---EEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCE
Q 042434          291 LKLWDVETGICK---HTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGEN  367 (517)
Q Consensus       291 i~iwd~~~~~~~---~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  367 (517)
                      +++|+.......   .....+...+.+++|+|++..+++++.+ .  +.+|+...  .......  ..+.+++++|++++
T Consensus        78 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~-~--i~~~~~~~--~~~~~~~--~~~~~~~~s~~~~~  150 (299)
T d1nr0a2          78 LKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYK-H--IAIYSHGK--LTEVPIS--YNSSCVALSNDKQF  150 (299)
T ss_dssp             EEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESS-E--EEEEETTE--EEEEECS--SCEEEEEECTTSCE
T ss_pred             EEEeccCCccccccccccccccccccccccccccccccccccc-c--cccccccc--ccccccc--cccccccccccccc
Confidence            999998654311   1122467788999999999988777654 4  77777442  2222222  35788999999999


Q ss_pred             EEEEeCCCcEEEEECCCce---EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcc--ceEEeCcccCceEE
Q 042434          368 LISVLSDKDIRILNLGTYA---ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEK--PFKYTGHSQNKYVI  442 (517)
Q Consensus       368 l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~--~~~~~~~~~~~~~i  442 (517)
                      +++++.||.|++||+++..   .....+...|.+++|+|+++++++++.++.|++||+.+....  ...+.+|...   +
T Consensus       151 l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~---v  227 (299)
T d1nr0a2         151 VAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAK---V  227 (299)
T ss_dssp             EEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSC---E
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---c
Confidence            9999999999999998766   344567889999999999999999999999999999765222  2234445544   6


Q ss_pred             EeecCCCCCcEEEEecCCCcEEEEecCCCcee--EEecCC-CCCeeEEEecCCCCcEEEEeeCCCcEEEeCCC
Q 042434          443 RSCFGGLDGTFIASGSENSQIYIWNRRNSKPI--EILSGH-SMTVNCVSWNPKRPKMLASASDDHTIRIWGPC  512 (517)
Q Consensus       443 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~h-~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~  512 (517)
                      .++.++|++++|++|+.||.|++||+.++...  .....| ...|.++.|.+ + .+|+|++.||+|++||+.
T Consensus       228 ~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~-~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         228 ACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN-E-TTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEE-T-TEEEEEETTSCEEEEECC
T ss_pred             ccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEECC-C-CEEEEEeCCCEEEEEecc
Confidence            66677999999999999999999999887543  333333 45677776654 5 489999999999999984

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.3e-36  Score=281.76  Aligned_cols=261  Identities=18%  Similarity=0.215  Sum_probs=218.4

Q ss_pred             CcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeE
Q 042434          203 HCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKL  282 (517)
Q Consensus       203 ~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l  282 (517)
                      ....++.........+.+|.+.|++++|+|+|++||+|+.||+|+|||+.++.. .....+..|..+|.+++|+|+++++
T Consensus        39 ~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~v~~s~d~~~l  117 (311)
T d1nr0a1          39 SVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH-ILKTTIPVFSGPVKDISWDSESKRI  117 (311)
T ss_dssp             EEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC-CEEEEEECSSSCEEEEEECTTSCEE
T ss_pred             EEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccc-ccccccccccCcccccccccccccc
Confidence            344555556778888999999999999999999999999999999999986644 2345678899999999999999999


Q ss_pred             EEEeC--CCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCe-EEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEE
Q 042434          283 LTCGN--AEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKR-LVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDL  359 (517)
Q Consensus       283 ~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~-l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~  359 (517)
                      ++++.  +..+++|++++++....+.+|...|.+++|+|++.+ +++|+.|+.  |.+||.++.........+...|.++
T Consensus       118 ~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~--i~i~d~~~~~~~~~~~~~~~~i~~v  195 (311)
T d1nr0a1         118 AAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNT--VAIFEGPPFKFKSTFGEHTKFVHSV  195 (311)
T ss_dssp             EEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSC--EEEEETTTBEEEEEECCCSSCEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccceeeecccccccc--ccccccccccccccccccccccccc
Confidence            99876  456999999999999999999999999999999885 788999999  8888998777666666666789999


Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCceEE---------eeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccce
Q 042434          360 AVTPDGENLISVLSDKDIRILNLGTYAER---------VISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPF  430 (517)
Q Consensus       360 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---------~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~  430 (517)
                      .++|+++++++++.|+.|++||..+....         ...|...|.+++|+|++++|++++.||.|++||++++ ....
T Consensus       196 ~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~-~~~~  274 (311)
T d1nr0a1         196 RYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL-KVEK  274 (311)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-EEEE
T ss_pred             ccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCC-cEEE
Confidence            99999999999999999999999876521         2235678999999999999999999999999999877 6666


Q ss_pred             EEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecC
Q 042434          431 KYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRR  469 (517)
Q Consensus       431 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~  469 (517)
                      .+..+.........+  .+++.++++++.||.|++||.+
T Consensus       275 ~l~~~~~~~~~~~~~--~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         275 TIPVGTRIEDQQLGI--IWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             EEECCSSGGGCEEEE--EECSSCEEEEETTCCEEEEETT
T ss_pred             EEECCCCccceEEEE--EecCCEEEEEECCCEEEEEeCC
Confidence            666554422222222  3456789999999999999964

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.1e-35  Score=273.35  Aligned_cols=278  Identities=16%  Similarity=0.198  Sum_probs=228.0

Q ss_pred             HhccccccCCCCCc-cccccCCCcccccCCCc-----ccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCC
Q 042434          182 TSQIDSCQYHNSSV-AISLYEDHCCGRDQIPT-----ETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDS  255 (517)
Q Consensus       182 ~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~  255 (517)
                      ...+.++.|+++.. .++..++....|+....     .......+|.+.|.+++|+|+|++|++|+.||.|++||+....
T Consensus        51 ~~~V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~  130 (337)
T d1gxra_          51 GEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT  130 (337)
T ss_dssp             SSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-
T ss_pred             CCcEEEEEECCCCCEEEEEECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccccccc
Confidence            44566667777666 33444444444543221     2233456899999999999999999999999999999986433


Q ss_pred             eeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeE
Q 042434          256 KLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGI  335 (517)
Q Consensus       256 ~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i  335 (517)
                       ......+..|...|.+++|+|++.++++++.|+.|++|++.++++......|...|.+++|++++..+++++.|+.  +
T Consensus       131 -~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~--v  207 (337)
T d1gxra_         131 -PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNT--V  207 (337)
T ss_dssp             --EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE--E
T ss_pred             -cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--c
Confidence             3455677889999999999999999999999999999999999999999999999999999999999999999999  8


Q ss_pred             EEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCC
Q 042434          336 FMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNS  414 (517)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d  414 (517)
                      .+|+........... +...|.+++|+|+++.+++++.|+.+++||+++.. .....+...|.+++|+|++++|++++.|
T Consensus       208 ~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~D  286 (337)
T d1gxra_         208 RSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKD  286 (337)
T ss_dssp             EEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             cccccccceeecccc-cccceEEEEEcccccccceeccccccccccccccccccccccccccceEEECCCCCEEEEEeCC
Confidence            888987654433332 33589999999999999999999999999999887 5666788899999999999999999999


Q ss_pred             CeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEec
Q 042434          415 QEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNR  468 (517)
Q Consensus       415 ~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~  468 (517)
                      +.|++||+.++ ....... |...   +.++.++|++++|++|+.||+|+|||+
T Consensus       287 g~i~iwd~~~~-~~~~~~~-~~~~---v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         287 NLLNAWRTPYG-ASIFQSK-ESSS---VLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             SEEEEEETTTC-CEEEEEE-CSSC---EEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             CeEEEEECCCC-CEEEEcc-CCCC---EEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            99999999876 4444433 3333   566677999999999999999999996

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-35  Score=274.22  Aligned_cols=288  Identities=17%  Similarity=0.248  Sum_probs=218.3

Q ss_pred             CCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCC
Q 042434          210 IPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAE  289 (517)
Q Consensus       210 ~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg  289 (517)
                      .+.++.++++||.+.|.+ +++++|++||||+.||+|+|||+.++   +.+.++.+|.+.|.+++|+|+  +|++|+.|+
T Consensus         4 ~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~---~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~   77 (342)
T d2ovrb2           4 GELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTG---KCLRTLVGHTGGVWSSQMRDN--IIISGSTDR   77 (342)
T ss_dssp             SCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTC---CEEEECCCCSSCEEEEEEETT--EEEEEETTS
T ss_pred             CCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCC---CEEEEEeCCCCCEEEEEeCCC--ccccceecc
Confidence            345677899999999865 36678999999999999999999766   466889999999999999864  999999999


Q ss_pred             eEEEEECCCCcEEEEeCCCCCceEEE--------------------------------------EEeCCCCeEEEeeCCC
Q 042434          290 VLKLWDVETGICKHTFGDHGFIVSSC--------------------------------------AWFPDSKRLVCGSSDT  331 (517)
Q Consensus       290 ~i~iwd~~~~~~~~~~~~~~~~v~~i--------------------------------------~~~~~~~~l~~~~~d~  331 (517)
                      .+++|+............+...+...                                      .+.+....+++++.|+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  157 (342)
T d2ovrb2          78 TLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDF  157 (342)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTS
T ss_pred             cccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCC
Confidence            99999987765544433332222221                                      2223445677777777


Q ss_pred             ceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEE
Q 042434          332 EKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFI  409 (517)
Q Consensus       332 ~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~  409 (517)
                      .  +..|+............+.  .....+.+++..+++++.||.|++||++...  .....+...+.+++++  +++++
T Consensus       158 ~--i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~  231 (342)
T d2ovrb2         158 M--VKVWDPETETCLHTLQGHT--NRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILV  231 (342)
T ss_dssp             C--EEEEEGGGTEEEEEECCCS--SCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEE
T ss_pred             e--EEEeecccceeeEEEcCcc--cccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEE
Confidence            7  6666766444333333332  3344556688999999999999999999877  3444556666666554  57999


Q ss_pred             EEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEec-----CCCCCe
Q 042434          410 VNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILS-----GHSMTV  484 (517)
Q Consensus       410 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~h~~~v  484 (517)
                      +++.|+.|++||+... .....+..+......+.++  +++++++++|+.||.|++||+++++++..+.     +|.+.|
T Consensus       232 s~s~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v  308 (342)
T d2ovrb2         232 SGNADSTVKIWDIKTG-QCLQTLQGPNKHQSAVTCL--QFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVV  308 (342)
T ss_dssp             EEETTSCEEEEETTTC-CEEEEECSTTSCSSCEEEE--EECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEE
T ss_pred             EEcCCCEEEEEecccc-cccccccccceeeeceeec--ccCCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCE
Confidence            9999999999999876 4555555554443334444  3467799999999999999999999988774     577889


Q ss_pred             eEEEecCCCCcEEEEeeCCCc----EEEeCCCC
Q 042434          485 NCVSWNPKRPKMLASASDDHT----IRIWGPCQ  513 (517)
Q Consensus       485 ~~v~~~~~~~~~l~s~~~dg~----v~iw~~~~  513 (517)
                      ++++|+|++ .++++|+.||+    |++||++.
T Consensus       309 ~~v~~s~~~-~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         309 WRIRASNTK-LVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EEEEECSSE-EEEEEECSSSSSCCEEEEEECCC
T ss_pred             EEEEECCCC-CEEEEEeCCCCCeeEEEEEeCCC
Confidence            999999999 79999999986    99999874

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.4e-34  Score=271.19  Aligned_cols=278  Identities=18%  Similarity=0.253  Sum_probs=215.9

Q ss_pred             EEEeccccCcE-EEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEE
Q 042434          215 VQILTEHKNEV-WFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKL  293 (517)
Q Consensus       215 ~~~l~~h~~~v-~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i  293 (517)
                      ..+|+||.+.| +|++|  ++++||||+.||+|+|||+.++   +.+.++.+|.++|++++|+|+ .+|++|+.||+|++
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~---~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~i   78 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINK---KFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRV   78 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTT---EEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEE
T ss_pred             cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCC---cEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccc
Confidence            56799999875 66655  6789999999999999999765   567889999999999999985 58999999999999


Q ss_pred             EECCCCcEEEEeCCC--CCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCC----------------------------
Q 042434          294 WDVETGICKHTFGDH--GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGN----------------------------  343 (517)
Q Consensus       294 wd~~~~~~~~~~~~~--~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~----------------------------  343 (517)
                      |+....+........  ........+.+++..+++++.|+.  +.+|+....                            
T Consensus        79 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (355)
T d1nexb2          79 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNT--LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV  156 (355)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSE--EEEEECCC-----------CCCEEESCTTTCTTEEEE
T ss_pred             ccccccccccccccccccccccccccccccceeeeecCCCc--EEEEEccCCceeccccccceeccceeccccccceeee
Confidence            999998877665443  334455667788888888888888  444544321                            


Q ss_pred             -----------------------------------eeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--
Q 042434          344 -----------------------------------EIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--  386 (517)
Q Consensus       344 -----------------------------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--  386 (517)
                                                         ............+.++.++|++..+++++.|+.|++||..++.  
T Consensus       157 ~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~  236 (355)
T d1nexb2         157 LRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELM  236 (355)
T ss_dssp             EECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEE
T ss_pred             eeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccccc
Confidence                                               1111111223456788999999999999999999999999887  


Q ss_pred             EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEE
Q 042434          387 ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIW  466 (517)
Q Consensus       387 ~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw  466 (517)
                      .....|...+.++++++  +++++++.||.|++||+++..   ..+..|......  ..++++++.++++|+ ||.|++|
T Consensus       237 ~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~--~~~~~~~~~~l~~g~-d~~i~vw  308 (355)
T d1nexb2         237 YTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYS---RKFSYHHTNLSA--ITTFYVSDNILVSGS-ENQFNIY  308 (355)
T ss_dssp             EEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCC---EEEEEECTTCCC--CCEEEECSSEEEEEE-TTEEEEE
T ss_pred             ccccccccccccccccc--ceeeeeecccccccccccccc---eecccccCCceE--EEEEcCCCCEEEEEe-CCEEEEE
Confidence            45556778899998864  699999999999999998652   233444443222  334477888877765 8999999


Q ss_pred             ecCCCceeE-EecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeC
Q 042434          467 NRRNSKPIE-ILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWG  510 (517)
Q Consensus       467 d~~~~~~~~-~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~  510 (517)
                      |+++++++. .+.+|.+.|.+++|+|+  .++++++.||.++||.
T Consensus       309 d~~tg~~~~~~~~~~~~~V~~v~~~~~--~~~~~~s~dg~~~l~~  351 (355)
T d1nexb2         309 NLRSGKLVHANILKDADQIWSVNFKGK--TLVAAVEKDGQSFLEI  351 (355)
T ss_dssp             ETTTCCBCCSCTTTTCSEEEEEEEETT--EEEEEEESSSCEEEEE
T ss_pred             ECCCCCEEEEEecCCCCCEEEEEEcCC--eEEEEEECCCcEEEEE
Confidence            999999885 56789999999999986  4788999999876654

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.6e-34  Score=268.16  Aligned_cols=286  Identities=13%  Similarity=0.084  Sum_probs=213.7

Q ss_pred             CcEEEEEECCCCCEEEEeeCCCc-EEEEEecCCCeeeEEEEeccCC-CCEEEEEECC--CCCeEEEEeCCCeEEEEECCC
Q 042434          223 NEVWFVQFSNNGEYLASSSSDCS-AIIWKVLEDSKLTLKHTLRSHQ-NPVSFVAWSP--DDTKLLTCGNAEVLKLWDVET  298 (517)
Q Consensus       223 ~~v~~~~~s~~~~~l~t~~~dg~-i~iw~~~~~~~~~~~~~~~~h~-~~v~~l~~s~--~~~~l~s~~~dg~i~iwd~~~  298 (517)
                      +.+++++|+|+|+.|+.++.+.. |+.|+.... .......+.+|. ..|++++|+|  ++.+|++|+.||+|++||+..
T Consensus        18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~-~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~   96 (325)
T d1pgua1          18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDS-KVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTF   96 (325)
T ss_dssp             TCCCCCEEETTTTEEEEEETTEEEEEECCSSCC-SSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCC-CccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecC
Confidence            34678999999999998875543 455654332 223445677774 6799999998  568999999999999999865


Q ss_pred             CcE--------EEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC-CeeEeeeCcCCCceEEEEEccCCCE-E
Q 042434          299 GIC--------KHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG-NEIKAWRGTRIPKVLDLAVTPDGEN-L  368 (517)
Q Consensus       299 ~~~--------~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~-l  368 (517)
                      ++.        ...+..|..+|.+++|+++++++++++.+....+..|+.+. ..+..+. .+...|.+++|+|++.. +
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~  175 (325)
T d1pgua1          97 DKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVS-GHSQRINACHLKQSRPMRS  175 (325)
T ss_dssp             EGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECC-SCSSCEEEEEECSSSSCEE
T ss_pred             CcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeee-ecccccccccccccccceE
Confidence            432        22345788999999999999999888764433366666554 4444444 34568999999999875 6


Q ss_pred             EEEeCCCcEEEEECCCceE--E---eeccCCCeeEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEE
Q 042434          369 ISVLSDKDIRILNLGTYAE--R---VISEEHPITSLSVSVD-CKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVI  442 (517)
Q Consensus       369 ~~~~~dg~i~i~d~~~~~~--~---~~~~~~~i~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i  442 (517)
                      ++++.|+.+++||....+.  .   ...+...|.+++|+|+ +.++++++.|+.|++||++++ .....+.+|......+
T Consensus       176 ~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~-~~~~~l~~~~~~v~~~  254 (325)
T d1pgua1         176 MTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG-EFLKYIEDDQEPVQGG  254 (325)
T ss_dssp             EEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC-CEEEECCBTTBCCCSC
T ss_pred             EEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccc-cccccccccccccccc
Confidence            7899999999999987662  1   1245567999999996 678899999999999999877 5666777766553322


Q ss_pred             EeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCC--eeEEEecCCCCcEEEEeeCCCcEEEeCC
Q 042434          443 RSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMT--VNCVSWNPKRPKMLASASDDHTIRIWGP  511 (517)
Q Consensus       443 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~--v~~v~~~~~~~~~l~s~~~dg~v~iw~~  511 (517)
                      ......++|++|++++.|+.|+|||+++++++..+..|...  +..+++.+.+...|+++|.||.|++||+
T Consensus       255 ~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         255 IFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             eeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            22211378999999999999999999999999988776544  3344444333247899999999999986

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.5e-33  Score=261.06  Aligned_cols=253  Identities=24%  Similarity=0.338  Sum_probs=218.5

Q ss_pred             EEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeC
Q 042434          261 HTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDC  340 (517)
Q Consensus       261 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~  340 (517)
                      .++.+|.++|++++|+|++++|++|+.||+|+|||+.+++.+.++..|...|.+++|+|++..+++++.++.  +..|+.
T Consensus        11 ~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~--~~~~~~   88 (317)
T d1vyhc1          11 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMT--IKLWDF   88 (317)
T ss_dssp             CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSC--CCEEET
T ss_pred             EEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccc--cccccc
Confidence            578899999999999999999999999999999999999999999999999999999999999999999998  777777


Q ss_pred             CCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEE
Q 042434          341 DGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIH  418 (517)
Q Consensus       341 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~  418 (517)
                      ...........+...+.++.++|+++.+++++.|+.+++||++++.  .....+...+.+++++|++.++++++.|+.|+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~  168 (317)
T d1vyhc1          89 QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR  168 (317)
T ss_dssp             TSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             cccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEE
Confidence            7666655555666789999999999999999999999999999877  44556788899999999999999999999999


Q ss_pred             EEEcCCCCccceEEeCcccCceEEEe-----------------ecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCC
Q 042434          419 MWDVAGKWEKPFKYTGHSQNKYVIRS-----------------CFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHS  481 (517)
Q Consensus       419 ~~d~~~~~~~~~~~~~~~~~~~~i~~-----------------~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~  481 (517)
                      +|++... .....+.++......+..                 ......+.++++++.||.|++||+.+++++.++.+|.
T Consensus       169 ~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~  247 (317)
T d1vyhc1         169 VWVVATK-ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD  247 (317)
T ss_dssp             EEETTTC-CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCS
T ss_pred             EEeeccc-eeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCC
Confidence            9999876 555555555544332221                 1112356789999999999999999999999999999


Q ss_pred             CCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCCC
Q 042434          482 MTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSEV  517 (517)
Q Consensus       482 ~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~v  517 (517)
                      ..|.+++|+|++ .+|++|+.||.|++||+.+++.+
T Consensus       248 ~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~  282 (317)
T d1vyhc1         248 NWVRGVLFHSGG-KFILSCADDKTLRVWDYKNKRCM  282 (317)
T ss_dssp             SCEEEEEECSSS-SCEEEEETTTEEEEECCTTSCCC
T ss_pred             CCEEEEEECCCC-CEEEEEECCCeEEEEECCCCcEE
Confidence            999999999999 79999999999999999988753

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.9e-34  Score=261.03  Aligned_cols=268  Identities=17%  Similarity=0.220  Sum_probs=210.9

Q ss_pred             cccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeE
Q 042434          212 TETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVL  291 (517)
Q Consensus       212 ~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i  291 (517)
                      .++++++.||.++|++++|+|    |+||+.||+|++||+.+        ...+|...|.+++|++++ .+++++.|+++
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~--------~~~~h~~~V~~~~~~~~~-~~~s~s~D~~v   69 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSS--------MHQDHSNLIVSLDNSKAQ-EYSSISWDDTL   69 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTE--------EECCCCSCEEEEECCSTT-CCEEEETTTEE
T ss_pred             cceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCC--------CCCCCCCCEEEEEecCCC-eEEEEeecccc
Confidence            467899999999999999998    99999999999999842        236799999999999764 67899999999


Q ss_pred             EEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCe-eEeeeCcCCCceEEEEEccCCCEEEE
Q 042434          292 KLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNE-IKAWRGTRIPKVLDLAVTPDGENLIS  370 (517)
Q Consensus       292 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~  370 (517)
                      ++|++.+.       .....+.++.+++++..+++++.++   +..|+..... ........  .  ..++++++..+++
T Consensus        70 ~~w~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~v  135 (287)
T d1pgua2          70 KVNGITKH-------EFGSQPKVASANNDGFTAVLTNDDD---LLILQSFTGDIIKSVRLNS--P--GSAVSLSQNYVAV  135 (287)
T ss_dssp             EETTEEEE-------ECSSCEEEEEECSSSEEEEEETTSE---EEEEETTTCCEEEEEECSS--C--EEEEEECSSEEEE
T ss_pred             cccccccc-------ccccceeeeeeccCCceEEEeeccc---ceeeeccceeeeeeccccc--e--eeeeeccCcceee
Confidence            99987532       2334577888998887777765554   6667766443 44433322  2  3466778888888


Q ss_pred             EeCCC-cEEEEECCCceE---EeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeec
Q 042434          371 VLSDK-DIRILNLGTYAE---RVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCF  446 (517)
Q Consensus       371 ~~~dg-~i~i~d~~~~~~---~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~  446 (517)
                      ++.++ .+++|++.....   ....+...+++++|+|++.++++++.||.|++||+.+.......+.+|....   .++.
T Consensus       136 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v---~~~~  212 (287)
T d1pgua2         136 GLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKI---NAIS  212 (287)
T ss_dssp             EETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCE---EEEE
T ss_pred             eccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccccccccccccccc---ceee
Confidence            88775 799999976652   2234567899999999999999999999999999987644444556666653   3333


Q ss_pred             CC----------CCCcEEEEecCCCcEEEEecCC-CceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCC
Q 042434          447 GG----------LDGTFIASGSENSQIYIWNRRN-SKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGP  511 (517)
Q Consensus       447 ~s----------~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~  511 (517)
                      |+          +++.++++|+.|++|++||+.+ ++.+..+.+|.+.|++++|+|++  .|+|+|.||+|++|++
T Consensus       213 ~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~--~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         213 WKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS--TLVSSGADACIKRWNV  286 (287)
T ss_dssp             ECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT--EEEEEETTSCEEEEEE
T ss_pred             ecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC--EEEEEECCCeEEEEEE
Confidence            34          4667999999999999999877 56778888999999999999987  5889999999999985

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3e-33  Score=266.17  Aligned_cols=241  Identities=14%  Similarity=0.175  Sum_probs=195.6

Q ss_pred             CCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc--EEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCC
Q 042434          266 HQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI--CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGN  343 (517)
Q Consensus       266 h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~  343 (517)
                      +.++|+|++|+||+++||+|+.||.|++||..+++  ++..+.+|..+|.+++|+|++++|++|+.|+.  |++|+..+.
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~--i~vWd~~~~   83 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRN--AYVWTLKGR   83 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSC--EEEEEEETT
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCe--EEEEeeccc
Confidence            45789999999999999999999999999998775  56778899999999999999999999999999  555665543


Q ss_pred             ee--EeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce------EEeeccCCCeeEEEEcCCCCEEEEEeCCC
Q 042434          344 EI--KAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA------ERVISEEHPITSLSVSVDCKNFIVNLNSQ  415 (517)
Q Consensus       344 ~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~i~~~~~s~~~~~l~~~~~d~  415 (517)
                      ..  ......+...|.+++|+|+++.+++++.|+.+++|++....      .....+...|.+++|+|+++++++++.|+
T Consensus        84 ~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~  163 (371)
T d1k8kc_          84 TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF  163 (371)
T ss_dssp             EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred             ccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCc
Confidence            32  22223445689999999999999999999999999886644      22234667899999999999999999999


Q ss_pred             eEEEEEcCCCCc-----------------cceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEec
Q 042434          416 EIHMWDVAGKWE-----------------KPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILS  478 (517)
Q Consensus       416 ~i~~~d~~~~~~-----------------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  478 (517)
                      .+++||......                 ......+|..   .+..+.|+|+|++|++++.||.|++||+.+++.+..+.
T Consensus       164 ~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~  240 (371)
T d1k8kc_         164 KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG---WVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA  240 (371)
T ss_dssp             CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS---CEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE
T ss_pred             EEEEEeeccCccccccccccccccccceeeeeeccCccC---cEEEEEeecccccccccccCCcceEEeeecccceeeee
Confidence            999999854311                 1112223332   25566679999999999999999999999999999999


Q ss_pred             CCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434          479 GHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ  513 (517)
Q Consensus       479 ~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~  513 (517)
                      .|..+|.+++|+|++ .++++ +.|+.+++|....
T Consensus       241 ~~~~~v~s~~fs~d~-~~la~-g~d~~~~~~~~~~  273 (371)
T d1k8kc_         241 SETLPLLAVTFITES-SLVAA-GHDCFPVLFTYDS  273 (371)
T ss_dssp             CSSCCEEEEEEEETT-EEEEE-ETTSSCEEEEEET
T ss_pred             cccccceeeeecCCC-CEEEE-EcCCceEEEEeeC
Confidence            999999999999998 56665 5577777766543

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.2e-32  Score=261.68  Aligned_cols=283  Identities=18%  Similarity=0.289  Sum_probs=225.6

Q ss_pred             HHhccccccCCCCCc-cccccCCCcccccCCCcccEEEec------------------cccCcEEEEEECCCCCEEEEee
Q 042434          181 VTSQIDSCQYHNSSV-AISLYEDHCCGRDQIPTETVQILT------------------EHKNEVWFVQFSNNGEYLASSS  241 (517)
Q Consensus       181 ~~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~------------------~h~~~v~~~~~s~~~~~l~t~~  241 (517)
                      +...+.++.|.++.. ..+..++.+..|+....+.+..+.                  +|...|++++|+|+|++|++|+
T Consensus        61 H~~~V~~l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~  140 (388)
T d1erja_          61 HTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA  140 (388)
T ss_dssp             CSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEE
T ss_pred             CCCcEEEEEECCCCCEEEEEeCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceecc
Confidence            345667778887665 333345555566655555555443                  5677899999999999999999


Q ss_pred             CCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCC
Q 042434          242 SDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDS  321 (517)
Q Consensus       242 ~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~  321 (517)
                      .||.|++|+...+   .......+|...|.+++|++++..+++++.++.+++||..+.........+...+....+.+++
T Consensus       141 ~dg~v~i~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (388)
T d1erja_         141 EDRLIRIWDIENR---KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDG  217 (388)
T ss_dssp             TTSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTC
T ss_pred             ccccccccccccc---ccccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCCC
Confidence            9999999999655   5567788999999999999999999999999999999999998887776665555555555588


Q ss_pred             CeEEEeeCCCceeEEEEeCCCCee-Eeee------CcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--------
Q 042434          322 KRLVCGSSDTEKGIFMCDCDGNEI-KAWR------GTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--------  386 (517)
Q Consensus       322 ~~l~~~~~d~~v~i~~~~~~~~~~-~~~~------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------  386 (517)
                      .+|++++.|+.  +.+|+...... ..+.      ..+...|.+++|+|+++++++++.||.|++||+++..        
T Consensus       218 ~~l~~~~~d~~--i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  295 (388)
T d1erja_         218 KYIAAGSLDRA--VRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP  295 (388)
T ss_dssp             CEEEEEETTSC--EEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------------
T ss_pred             CeEEEEcCCCe--EEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccc
Confidence            99999999999  88888774332 2221      2345689999999999999999999999999997643        


Q ss_pred             ------EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEe---ecCCCCCcEEEEe
Q 042434          387 ------ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRS---CFGGLDGTFIASG  457 (517)
Q Consensus       387 ------~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~---~~~s~~~~~l~~~  457 (517)
                            .....+...+.+++|+|+++++++++.||.|++||+.++ ..+..+.+|...+..+..   ..++|++.+|++|
T Consensus       296 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~-~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~  374 (388)
T d1erja_         296 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG-NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATG  374 (388)
T ss_dssp             ---CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEE
T ss_pred             cccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCC-cEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEE
Confidence                  223356778999999999999999999999999999887 777889999887665543   3468999999999


Q ss_pred             cCCCcEEEEecC
Q 042434          458 SENSQIYIWNRR  469 (517)
Q Consensus       458 ~~dg~i~iwd~~  469 (517)
                      +.||+|+||+++
T Consensus       375 s~Dg~I~iW~~~  386 (388)
T d1erja_         375 SGDCKARIWKYK  386 (388)
T ss_dssp             ETTSEEEEEEEE
T ss_pred             eCCCEEEEEeee
Confidence            999999999975

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.3e-32  Score=253.55  Aligned_cols=248  Identities=20%  Similarity=0.332  Sum_probs=201.4

Q ss_pred             eEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeC-CCCCceEEEEEeCCCCeEEEeeCCCceeEE
Q 042434          258 TLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFG-DHGFIVSSCAWFPDSKRLVCGSSDTEKGIF  336 (517)
Q Consensus       258 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~  336 (517)
                      ...+++.||.++|++++|+|++++|++|+.||+|++||++++++.+.+. .|...|++++|+|++.+ ++++.|+.  +.
T Consensus         3 ~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~--v~   79 (299)
T d1nr0a2           3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDH--LK   79 (299)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE-EEEETTTE--EE
T ss_pred             ccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecccee-ecccceee--EE
Confidence            3567899999999999999999999999999999999999999998885 68999999999999864 55667887  77


Q ss_pred             EEeCCCCeeE---eeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeC
Q 042434          337 MCDCDGNEIK---AWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLN  413 (517)
Q Consensus       337 ~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  413 (517)
                      .|+..+....   .........+.+++++++++.++++ .++.+.+|+....  ........+.+++|+|+++++++++.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~-~~~~i~~~~~~~~--~~~~~~~~~~~~~~s~~~~~l~~g~~  156 (299)
T d1nr0a2          80 VVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAA-CYKHIAIYSHGKL--TEVPISYNSSCVALSNDKQFVAVGGQ  156 (299)
T ss_dssp             EECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEE-ESSEEEEEETTEE--EEEECSSCEEEEEECTTSCEEEEEET
T ss_pred             EeccCCcccccccccccccccccccccccccccccccc-ccccccccccccc--cccccccccccccccccccccccccc
Confidence            7776643321   2222334578899999999877665 4568999996543  33345567889999999999999999


Q ss_pred             CCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCcee---EEecCCCCCeeEEEec
Q 042434          414 SQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPI---EILSGHSMTVNCVSWN  490 (517)
Q Consensus       414 d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~h~~~v~~v~~~  490 (517)
                      |+.|++||+++..........|...   +.++.++|+++++++++.||.|++||+.++..+   ..+.+|...|++++|+
T Consensus       157 dg~i~~~d~~~~~~~~~~~~~~~~~---i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s  233 (299)
T d1nr0a2         157 DSKVHVYKLSGASVSEVKTIVHPAE---ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWS  233 (299)
T ss_dssp             TSEEEEEEEETTEEEEEEEEECSSC---EEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEEC
T ss_pred             ccccccccccccccccccccccccc---cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999998763333344445444   566677999999999999999999999887654   3456799999999999


Q ss_pred             CCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434          491 PKRPKMLASASDDHTIRIWGPCQSS  515 (517)
Q Consensus       491 ~~~~~~l~s~~~dg~v~iw~~~~~~  515 (517)
                      |++ .+|++|+.||.|++||+.+++
T Consensus       234 ~~~-~~l~sgs~dg~i~iwd~~~~~  257 (299)
T d1nr0a2         234 PDN-VRLATGSLDNSVIVWNMNKPS  257 (299)
T ss_dssp             TTS-SEEEEEETTSCEEEEETTCTT
T ss_pred             ccc-cceEEEcCCCEEEEEECCCCC
Confidence            999 799999999999999998764

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.8e-32  Score=245.90  Aligned_cols=274  Identities=21%  Similarity=0.308  Sum_probs=213.5

Q ss_pred             ccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEE
Q 042434          213 ETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLK  292 (517)
Q Consensus       213 ~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~  292 (517)
                      +.+....+|...|+|++|  ||++||||+.||+|+|||+.++   +...++.+|.++|++++|  ++++|++|+.||.|+
T Consensus         6 ~~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~---~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~   78 (293)
T d1p22a2           6 QRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTL---ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVR   78 (293)
T ss_dssp             CCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSC---CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEE
T ss_pred             EEEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCC---cEEEEEecCCCCEeeeec--ccceeeccccccccc
Confidence            345566789999999765  7899999999999999999765   566889999999999987  578999999999999


Q ss_pred             EEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCe---eEeeeCcCCCceEEEEEccCCCEEE
Q 042434          293 LWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNE---IKAWRGTRIPKVLDLAVTPDGENLI  369 (517)
Q Consensus       293 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~  369 (517)
                      +|++..+........+....  ..+.+....++++..++.  +.+|+.....   .......+...+..+.+.  ...++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~  152 (293)
T d1p22a2          79 VWDVNTGEMLNTLIHHCEAV--LHLRFNNGMMVTCSKDRS--IAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIV  152 (293)
T ss_dssp             EEESSSCCEEEEECCCCSCE--EEEECCTTEEEEEETTSC--EEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEE
T ss_pred             cccccccccccccccccccc--ccccccccceeecccccc--eeEeeccccccccccccccccccccccceec--ccccc
Confidence            99999998887775554443  345566778999999999  6667765422   222333444466666554  45788


Q ss_pred             EEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecC
Q 042434          370 SVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFG  447 (517)
Q Consensus       370 ~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~  447 (517)
                      +++.|+.+++||.++.+  .....+...+..+.+  ++..+++++.|+.|++||+++. .......++...   +..  +
T Consensus       153 ~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~---v~~--~  224 (293)
T d1p22a2         153 SASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG-ACLRVLEGHEEL---VRC--I  224 (293)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTC-CEEEEECCCSSC---EEE--E
T ss_pred             cccCCCceeeecCCCCcEEEEEcccccccccccC--CCCeEEEecCCCEEEEEecccc-eeeeeeccccee---eee--c
Confidence            99999999999999887  333445555555555  5678999999999999999876 555666666554   222  2


Q ss_pred             CCCCcEEEEecCCCcEEEEecCC---------CceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeC
Q 042434          448 GLDGTFIASGSENSQIYIWNRRN---------SKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWG  510 (517)
Q Consensus       448 s~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~  510 (517)
                      ++++.+|++|+.||.|++||+.+         ..++..+.+|.+.|++++|++   .+|+|||.||+|++||
T Consensus       225 ~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~---~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         225 RFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE---FQIVSSSHDDTILIWD  293 (293)
T ss_dssp             ECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECS---SCEEECCSSSEEEEEC
T ss_pred             cccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEcC---CEEEEEecCCEEEEeC
Confidence            56889999999999999999643         346788899999999999953   4699999999999998

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.9e-32  Score=255.04  Aligned_cols=296  Identities=13%  Similarity=0.076  Sum_probs=223.9

Q ss_pred             ccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCC-CeEEEEeCCCeE
Q 042434          213 ETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDD-TKLLTCGNAEVL  291 (517)
Q Consensus       213 ~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i  291 (517)
                      +.++..++|++.|++++|+|++++||+|+.||+|+|||+..+..........+|.++|.+++|+|++ .+|++|+.||.|
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v   81 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence            4577889999999999999999999999999999999998765544455556799999999999864 589999999999


Q ss_pred             EEEECCCCcEEEEeCCC-CCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC--Ce--e-EeeeC-cCCCceEEEEEccC
Q 042434          292 KLWDVETGICKHTFGDH-GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG--NE--I-KAWRG-TRIPKVLDLAVTPD  364 (517)
Q Consensus       292 ~iwd~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~--~~--~-~~~~~-~~~~~i~~~~~~~~  364 (517)
                      ++|++..+........+ ........+.++...+++++.++.  +.+||.+.  ..  . ..... ........+.+.+.
T Consensus        82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (342)
T d1yfqa_          82 LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGL--IEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTN  159 (342)
T ss_dssp             EEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSE--EEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEEC
T ss_pred             eeeecccccccccccccccccccccccccccccccccccccc--cceeeccccccceeeecccccccccceeeeeeeecc
Confidence            99999988777766544 344455667778899999999999  77777642  11  1 11111 11224556778888


Q ss_pred             CCEEEEEeCCCcEEEEECCCce-----EEeeccCCCeeEEEEc-CCCCEEEEEeCCCeEEEEEcCCCCccc-----eE--
Q 042434          365 GENLISVLSDKDIRILNLGTYA-----ERVISEEHPITSLSVS-VDCKNFIVNLNSQEIHMWDVAGKWEKP-----FK--  431 (517)
Q Consensus       365 ~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~i~~~~~s-~~~~~l~~~~~d~~i~~~d~~~~~~~~-----~~--  431 (517)
                      +..+++++.|+.|++||+....     ...........+..+. .++..+++++.||.+.+|+........     ..  
T Consensus       160 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~  239 (342)
T d1yfqa_         160 SSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR  239 (342)
T ss_dssp             SSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEE
T ss_pred             CCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceee
Confidence            9999999999999999997655     2222334445555554 467889999999999999985431111     11  


Q ss_pred             ----EeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEE
Q 042434          432 ----YTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIR  507 (517)
Q Consensus       432 ----~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~  507 (517)
                          ...+......+.++.|+|++++|++|+.||.|++||+.+++.+.++..+ ..+..++|+|++ .++++++.|+.++
T Consensus       240 ~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~~~-~~l~~a~sdd~~~  317 (342)
T d1yfqa_         240 CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSD-NILCLATSDDTFK  317 (342)
T ss_dssp             CCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEEECS-SEEEEEEECTHHH
T ss_pred             eeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCC-CCCEEEEEEeCC-CEEEEEEcCCcEE
Confidence                1112233445677888999999999999999999999999999988643 345567788888 6888888888888


Q ss_pred             EeCCC
Q 042434          508 IWGPC  512 (517)
Q Consensus       508 iw~~~  512 (517)
                      +|...
T Consensus       318 ~~~~~  322 (342)
T d1yfqa_         318 TNAAI  322 (342)
T ss_dssp             HCSSS
T ss_pred             Eeeee
Confidence            88764

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.7e-30  Score=241.97  Aligned_cols=250  Identities=19%  Similarity=0.331  Sum_probs=209.9

Q ss_pred             eEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEE
Q 042434          258 TLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM  337 (517)
Q Consensus       258 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~  337 (517)
                      +..+++.+|.++|++++|+|++++||+|+.||+|+|||+.+++.+..+..|...|.+++|+|++.++++|+.|+.  +..
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~--i~~  123 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI--CSI  123 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCC--EEE
T ss_pred             eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccce--eec
Confidence            345789999999999999999999999999999999999999999999999999999999999999999999999  666


Q ss_pred             EeCCCC-----eeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEE
Q 042434          338 CDCDGN-----EIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIV  410 (517)
Q Consensus       338 ~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~  410 (517)
                      |+....     ....... +. ..........+..+.....+.....++.....  .........+....+.+.+..+++
T Consensus       124 ~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (340)
T d1tbga_         124 YNLKTREGNVRVSRELAG-HT-GYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS  201 (340)
T ss_dssp             EESSSSCSCCCEEEEECC-CS-SCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             ccccccccccccceeccc-cc-ccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEE
Confidence            665421     1222222 22 23334444556678888899999999887766  455566778899999999999999


Q ss_pred             EeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEec--CCCCCeeEEE
Q 042434          411 NLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILS--GHSMTVNCVS  488 (517)
Q Consensus       411 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~v~  488 (517)
                      ++.|+.|++||+++. .....+.+|...   +.++.++|++++|++|+.||.|++||+.....+..+.  .|...|++++
T Consensus       202 ~~~d~~v~i~d~~~~-~~~~~~~~h~~~---i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~  277 (340)
T d1tbga_         202 GACDASAKLWDVREG-MCRQTFTGHESD---INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS  277 (340)
T ss_dssp             EETTTEEEEEETTTT-EEEEEECCCSSC---EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEE
T ss_pred             eecCceEEEEECCCC-cEEEEEeCCCCC---eEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEE
Confidence            999999999999887 667777777765   5566679999999999999999999999988877664  5677899999


Q ss_pred             ecCCCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434          489 WNPKRPKMLASASDDHTIRIWGPCQSSE  516 (517)
Q Consensus       489 ~~~~~~~~l~s~~~dg~v~iw~~~~~~~  516 (517)
                      |+|++ .+|++|+.||.|++||+.+++.
T Consensus       278 ~s~~~-~~l~~g~~dg~i~iwd~~~~~~  304 (340)
T d1tbga_         278 FSKSG-RLLLAGYDDFNCNVWDALKADR  304 (340)
T ss_dssp             ECSSS-CEEEEEETTSCEEEEETTTCCE
T ss_pred             ECCCC-CEEEEEECCCEEEEEECCCCcE
Confidence            99999 7999999999999999988764

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-30  Score=243.20  Aligned_cols=252  Identities=19%  Similarity=0.254  Sum_probs=197.0

Q ss_pred             cccEEEecccc-CcEEEEEECC--CCCEEEEeeCCCcEEEEEecCCCee-----eEEEEeccCCCCEEEEEECCCCCeEE
Q 042434          212 TETVQILTEHK-NEVWFVQFSN--NGEYLASSSSDCSAIIWKVLEDSKL-----TLKHTLRSHQNPVSFVAWSPDDTKLL  283 (517)
Q Consensus       212 ~~~~~~l~~h~-~~v~~~~~s~--~~~~l~t~~~dg~i~iw~~~~~~~~-----~~~~~~~~h~~~v~~l~~s~~~~~l~  283 (517)
                      ......+.+|. ..|++++|+|  +|.+||+|+.||+|+|||+..+...     .....+..|.++|.+++|++++++++
T Consensus        52 ~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~  131 (325)
T d1pgua1          52 VPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLC  131 (325)
T ss_dssp             SCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             ccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccc
Confidence            35577788875 6899999998  6789999999999999998654321     22334567899999999999999998


Q ss_pred             EEeC--CCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCe-EEEeeCCCceeEEEEeCCCCeeE-eee--CcCCCceE
Q 042434          284 TCGN--AEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKR-LVCGSSDTEKGIFMCDCDGNEIK-AWR--GTRIPKVL  357 (517)
Q Consensus       284 s~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~-l~~~~~d~~v~i~~~~~~~~~~~-~~~--~~~~~~i~  357 (517)
                      +++.  ++.+.+|+.++++++..+.+|...|.+++|+|++.. +++++.|+.  +.+|+....... ...  ..+...|.
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~--v~~~d~~~~~~~~~~~~~~~~~~~v~  209 (325)
T d1pgua1         132 VVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGS--VVFYQGPPFKFSASDRTHHKQGSFVR  209 (325)
T ss_dssp             EEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTE--EEEEETTTBEEEEEECSSSCTTCCEE
T ss_pred             eeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccc--cccccccccccceecccccCCCCccE
Confidence            7764  678999999999999999999999999999999875 678999999  777887654432 222  23345799


Q ss_pred             EEEEccC-CCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEc---CCCCEEEEEeCCCeEEEEEcCCCCccceE
Q 042434          358 DLAVTPD-GENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVS---VDCKNFIVNLNSQEIHMWDVAGKWEKPFK  431 (517)
Q Consensus       358 ~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s---~~~~~l~~~~~d~~i~~~d~~~~~~~~~~  431 (517)
                      +++|+|+ +.++++++.|+.|++||+++++  .....+..++..+.|+   |++++|++++.|+.|++||++++ ..+..
T Consensus       210 ~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~-~~~~~  288 (325)
T d1pgua1         210 DVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTS-KCVQK  288 (325)
T ss_dssp             EEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTT-EEEEE
T ss_pred             EeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCC-CEEEE
Confidence            9999997 6789999999999999999887  3334455566555554   68999999999999999999877 66666


Q ss_pred             EeCcccCce--EEEeecCCCCCcEEEEecCCCcEEEEec
Q 042434          432 YTGHSQNKY--VIRSCFGGLDGTFIASGSENSQIYIWNR  468 (517)
Q Consensus       432 ~~~~~~~~~--~i~~~~~s~~~~~l~~~~~dg~i~iwd~  468 (517)
                      +..+.....  .+.+.  .+.+.+|++++.||.|++||+
T Consensus       289 ~~~~~~~~~~~~~~~~--~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         289 WTLDKQQLGNQQVGVV--ATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EECCTTCGGGCEEEEE--EEETTEEEEEETTSCEEEEET
T ss_pred             EEecCCcccCeEEEEE--ECCCCEEEEEECCCEEEEEEC
Confidence            665554322  22222  233457899999999999996

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=1.6e-30  Score=249.16  Aligned_cols=289  Identities=16%  Similarity=0.151  Sum_probs=204.9

Q ss_pred             EEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCe---eeEEEEeccCCCCEEEEEE------CC-CCCeEEE
Q 042434          215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSK---LTLKHTLRSHQNPVSFVAW------SP-DDTKLLT  284 (517)
Q Consensus       215 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~---~~~~~~~~~h~~~v~~l~~------s~-~~~~l~s  284 (517)
                      ....++|.+.|+++++++  ++++|||.|++|+|||......   .........|...+..+..      ++ ++..+++
T Consensus         7 ~~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s   84 (393)
T d1sq9a_           7 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT   84 (393)
T ss_dssp             EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred             eecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEE
Confidence            456789999999999865  6999999999999999754321   1112223345555443332      21 3357789


Q ss_pred             EeCCCeEEEEECCCCcEE-----EEe-----CCCCCceEEEEEeCC-----CCeEEEeeCCCceeEEEEeCCCCe-----
Q 042434          285 CGNAEVLKLWDVETGICK-----HTF-----GDHGFIVSSCAWFPD-----SKRLVCGSSDTEKGIFMCDCDGNE-----  344 (517)
Q Consensus       285 ~~~dg~i~iwd~~~~~~~-----~~~-----~~~~~~v~~i~~~~~-----~~~l~~~~~d~~v~i~~~~~~~~~-----  344 (517)
                      ++.||.|++|++......     ...     ..+...+..++|.++     +.++++++.||.+.+|........     
T Consensus        85 ~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~  164 (393)
T d1sq9a_          85 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT  164 (393)
T ss_dssp             EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred             EeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceee
Confidence            999999999997543211     111     123456778888875     468899999999555554432110     


Q ss_pred             --------e---EeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceE--------EeeccCCCeeEEEEcCCC
Q 042434          345 --------I---KAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAE--------RVISEEHPITSLSVSVDC  405 (517)
Q Consensus       345 --------~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--------~~~~~~~~i~~~~~s~~~  405 (517)
                              .   ......+...+.+++|+|++ ++++|+.||+|++||+.+++.        ....|..+|.+++|+|+|
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg  243 (393)
T d1sq9a_         165 LNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG  243 (393)
T ss_dssp             TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSST
T ss_pred             eeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccccc
Confidence                    0   01112223458899999998 889999999999999998762        223467899999999999


Q ss_pred             CEEEEEeCCC---eEEEEEcCCCCccceEE-------------eCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecC
Q 042434          406 KNFIVNLNSQ---EIHMWDVAGKWEKPFKY-------------TGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRR  469 (517)
Q Consensus       406 ~~l~~~~~d~---~i~~~d~~~~~~~~~~~-------------~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~  469 (517)
                      ++|++++.|+   .|++||+.++ .....+             .+|...   |.++.|+|++++|++|+.||+|++||+.
T Consensus       244 ~~l~sgs~D~t~~~i~lwd~~~g-~~~~~l~~~~~~~~~~~~~~gH~~~---V~~l~fspd~~~l~S~s~D~~v~vWd~~  319 (393)
T d1sq9a_         244 SLLAIAHDSNSFGCITLYETEFG-ERIGSLSVPTHSSQASLGEFAHSSW---VMSLSFNDSGETLCSAGWDGKLRFWDVK  319 (393)
T ss_dssp             TEEEEEEEETTEEEEEEEETTTC-CEEEEECBC--------CCBSBSSC---EEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred             ceeeeecCCCCcceeeecccccc-eeeeeeccccccccceeeeecccCc---eeeeccCCCCCeeEEECCCCEEEEEECC
Confidence            9999999887   4899999876 333333             356554   6667779999999999999999999999


Q ss_pred             CCceeEEecCCCCCe---------------------eEEEecCCC---------CcEEEEeeCCCcEEEeC
Q 042434          470 NSKPIEILSGHSMTV---------------------NCVSWNPKR---------PKMLASASDDHTIRIWG  510 (517)
Q Consensus       470 ~~~~~~~~~~h~~~v---------------------~~v~~~~~~---------~~~l~s~~~dg~v~iw~  510 (517)
                      +|+++.++.+|.+.|                     .++.|.+.+         ...+++++.|+.|++|.
T Consensus       320 ~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~  390 (393)
T d1sq9a_         320 TKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR  390 (393)
T ss_dssp             TTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred             CCCEEEEECCcCCcccCCccEEEECCCCCEEEEcccceEEECccCceeccccCCCCEEEEEEcCCeEEEEe
Confidence            999999999997554                     344444332         12477788888888875

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.98  E-value=4.7e-31  Score=249.50  Aligned_cols=275  Identities=15%  Similarity=0.126  Sum_probs=212.0

Q ss_pred             EEECC-CCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCC--eEEEEECCCCcEEEE
Q 042434          228 VQFSN-NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAE--VLKLWDVETGICKHT  304 (517)
Q Consensus       228 ~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg--~i~iwd~~~~~~~~~  304 (517)
                      -.||| ||+++|+++. |.|++|+...+.   ...  .+|...|.+++|+|||++|++++.+.  .|++||.++++.. .
T Consensus         8 ~~fSP~dG~~~a~~~~-g~v~v~d~~~~~---~~~--~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~   80 (360)
T d1k32a3           8 EDFSPLDGDLIAFVSR-GQAFIQDVSGTY---VLK--VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-K   80 (360)
T ss_dssp             EEEEECGGGCEEEEET-TEEEEECTTSSB---EEE--CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-E
T ss_pred             ccccCCCCCEEEEEEC-CeEEEEECCCCc---EEE--ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-E
Confidence            56999 9999999864 799999997553   222  36999999999999999998876654  7999999887755 5


Q ss_pred             eCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEe----------CC
Q 042434          305 FGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVL----------SD  374 (517)
Q Consensus       305 ~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~d  374 (517)
                      +..|...|.+++|+|++++|++++.++.  ++.|+..+.........+...+.+++|+|+|++++.+.          .+
T Consensus        81 ~~~~~~~v~~~~~spdg~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~  158 (360)
T d1k32a3          81 FEENLGNVFAMGVDRNGKFAVVANDRFE--IMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVM  158 (360)
T ss_dssp             CCCCCCSEEEEEECTTSSEEEEEETTSE--EEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCE
T ss_pred             eeCCCceEEeeeecccccccceeccccc--cccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccc
Confidence            6689999999999999999999999999  89999987766666555656889999999999998654          34


Q ss_pred             CcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc------cceEEeC-------------
Q 042434          375 KDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWE------KPFKYTG-------------  434 (517)
Q Consensus       375 g~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~------~~~~~~~-------------  434 (517)
                      +.+++||+.+.+ .....+...+..++|+|+|+.|++++.++.+.+||......      .......             
T Consensus       159 ~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  238 (360)
T d1k32a3         159 QAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPR  238 (360)
T ss_dssp             EEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCG
T ss_pred             cceeeeccccCceeeecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCC
Confidence            469999999887 55566777889999999999999999999999998643100      0000000             


Q ss_pred             ---------------------------------cccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCC
Q 042434          435 ---------------------------------HSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHS  481 (517)
Q Consensus       435 ---------------------------------~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~  481 (517)
                                                       +......+.....++++.++++++.++.|++||+.+++..    .|.
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----~~~  314 (360)
T d1k32a3         239 SMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT----EVK  314 (360)
T ss_dssp             GGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE----EEE
T ss_pred             cCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE----Eec
Confidence                                             0000111222222333345566777899999999887643    244


Q ss_pred             CCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434          482 MTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSE  516 (517)
Q Consensus       482 ~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~  516 (517)
                      +.|.+++|+||| +.|++++.||.|++|+++++++
T Consensus       315 ~~v~~~~~SpDG-~~l~~~~~Dg~i~v~d~~~~~~  348 (360)
T d1k32a3         315 NNLTDLRLSADR-KTVMVRKDDGKIYTFPLEKPED  348 (360)
T ss_dssp             EEEEEEEECTTS-CEEEEEETTSCEEEEESSCTTS
T ss_pred             CCcCEEEECCCC-CEEEEEECCCeEEEEECCCCCc
Confidence            569999999999 7999999999999999998765

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=7.6e-29  Score=233.12  Aligned_cols=245  Identities=20%  Similarity=0.267  Sum_probs=194.5

Q ss_pred             EEEEeccCCCCE-EEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEE
Q 042434          259 LKHTLRSHQNPV-SFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM  337 (517)
Q Consensus       259 ~~~~~~~h~~~v-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~  337 (517)
                      ...++++|...| +|++|  ++++|++|+.||+|+|||+.+++++.++.+|..+|.+++|+|+ .+|++|+.|+.  +.+
T Consensus         4 ~~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~--i~i   78 (355)
T d1nexb2           4 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRT--VRV   78 (355)
T ss_dssp             EEEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCC--EEE
T ss_pred             CcEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccc--ccc
Confidence            346789998886 66655  6889999999999999999999999999999999999999985 58999999999  777


Q ss_pred             EeCCCCeeEeeeC--cCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceEEe-e----------------------cc
Q 042434          338 CDCDGNEIKAWRG--TRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERV-I----------------------SE  392 (517)
Q Consensus       338 ~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~----------------------~~  392 (517)
                      |+...........  ..........+.+++..+++++.|+.|++||+.+..... .                      ..
T Consensus        79 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (355)
T d1nexb2          79 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR  158 (355)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEE
T ss_pred             ccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeee
Confidence            7877654433322  222345566778899999999999999999997654110 0                      01


Q ss_pred             CCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCc
Q 042434          393 EHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSK  472 (517)
Q Consensus       393 ~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  472 (517)
                      .+......+.++++.++++..|+.+++||+.+. .......++...   +....+++++.++++++.||.|++||..++.
T Consensus       159 ~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~  234 (355)
T d1nexb2         159 GHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQM-KCLYILSGHTDR---IYSTIYDHERKRCISASMDTTIRIWDLENGE  234 (355)
T ss_dssp             CCSSCEEEEEEETTEEEEEETTSCEEEEETTTT-EEEEEECCCSSC---EEEEEEETTTTEEEEEETTSCEEEEETTTCC
T ss_pred             eccccccccccccceeeeecccceeeeeecccc-cceeeeeccccc---cccccccccceeeecccccceEEeeeccccc
Confidence            112223455667899999999999999999876 555555555444   4455568999999999999999999999999


Q ss_pred             eeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434          473 PIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS  515 (517)
Q Consensus       473 ~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~  515 (517)
                      ++..+.+|...|.+++|++   .+|++++.||.|++||+.++.
T Consensus       235 ~~~~~~~h~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~  274 (355)
T d1nexb2         235 LMYTLQGHTALVGLLRLSD---KFLVSAAADGSIRGWDANDYS  274 (355)
T ss_dssp             EEEEECCCSSCCCEEEECS---SEEEEECTTSEEEEEETTTCC
T ss_pred             ccccccccccccccccccc---ceeeeeecccccccccccccc
Confidence            9999999999999999974   479999999999999998765

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.5e-28  Score=229.83  Aligned_cols=246  Identities=21%  Similarity=0.314  Sum_probs=189.1

Q ss_pred             eeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEE
Q 042434          257 LTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIF  336 (517)
Q Consensus       257 ~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~  336 (517)
                      .+....+++|.+.|.+ +++++|++||||+.||+|+|||+.++++++++.+|...|.+++|+|+  ++++|+.|+.  +.
T Consensus         6 ~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~--~~   80 (342)
T d2ovrb2           6 LKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRT--LK   80 (342)
T ss_dssp             CCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSC--EE
T ss_pred             CCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceeccc--cc
Confidence            3455788999999865 46668999999999999999999999999999999999999999875  9999999999  66


Q ss_pred             EEeCCCCeeEeeeCcCCCc--------------------------------------eEEEEEccCCCEEEEEeCCCcEE
Q 042434          337 MCDCDGNEIKAWRGTRIPK--------------------------------------VLDLAVTPDGENLISVLSDKDIR  378 (517)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~--------------------------------------i~~~~~~~~~~~l~~~~~dg~i~  378 (517)
                      .|+................                                      .......+....+++++.++.++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~  160 (342)
T d2ovrb2          81 VWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVK  160 (342)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEE
T ss_pred             ccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEE
Confidence            6665543322211111101                                      01123334556788888999999


Q ss_pred             EEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEec
Q 042434          379 ILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGS  458 (517)
Q Consensus       379 i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  458 (517)
                      +||............+......+++++.++++++.||.|++||++.. .....+.+|.....   ++  +++++++++|+
T Consensus       161 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~-~~~~~~~~~~~~v~---~~--~~~~~~l~s~s  234 (342)
T d2ovrb2         161 VWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETG-NCIHTLTGHQSLTS---GM--ELKDNILVSGN  234 (342)
T ss_dssp             EEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTC-CEEEEECCCCSCEE---EE--EEETTEEEEEE
T ss_pred             EeecccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccc-eeeeEeccccccee---EE--ecCCCEEEEEc
Confidence            99998877444444455566667778999999999999999999877 66677777766533   33  34677999999


Q ss_pred             CCCcEEEEecCCCceeEEecC---CCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434          459 ENSQIYIWNRRNSKPIEILSG---HSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSE  516 (517)
Q Consensus       459 ~dg~i~iwd~~~~~~~~~~~~---h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~  516 (517)
                      .||.|++||....+....+.+   |...+.++.+++   .++++|+.||+|++||+.+++.
T Consensus       235 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~s~Dg~i~iwd~~tg~~  292 (342)
T d2ovrb2         235 ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEF  292 (342)
T ss_dssp             TTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCE
T ss_pred             CCCEEEEEecccccccccccccceeeeceeecccCC---CeeEEEcCCCEEEEEECCCCCE
Confidence            999999999999988877765   556777777764   5799999999999999998764

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.5e-28  Score=229.54  Aligned_cols=256  Identities=13%  Similarity=0.132  Sum_probs=190.9

Q ss_pred             eEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEE---EeCCCCCceEEEEEeCCC-CeEEEeeCCCce
Q 042434          258 TLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKH---TFGDHGFIVSSCAWFPDS-KRLVCGSSDTEK  333 (517)
Q Consensus       258 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~i~~~~~~-~~l~~~~~d~~v  333 (517)
                      +.+....+|.+.|++++|+|++++||+|+.||+|+|||+.++....   ....|..+|.+++|+|++ .+|++|+.|+. 
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~-   80 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGE-   80 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSC-
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccc-
Confidence            3456678999999999999999999999999999999997664332   223699999999999864 57999999999 


Q ss_pred             eEEEEeCCCCee-EeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce---EEee-----ccCCCeeEEEEcCC
Q 042434          334 GIFMCDCDGNEI-KAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA---ERVI-----SEEHPITSLSVSVD  404 (517)
Q Consensus       334 ~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~-----~~~~~i~~~~~s~~  404 (517)
                       +++|+...... ...............+.+++..+++++.++.+++||++...   ....     ..........+.+.
T Consensus        81 -v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (342)
T d1yfqa_          81 -ILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTN  159 (342)
T ss_dssp             -EEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEEC
T ss_pred             -eeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeecc
Confidence             77888765433 33333333345566677788899999999999999986543   1111     12234556778888


Q ss_pred             CCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCcee----------
Q 042434          405 CKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPI----------  474 (517)
Q Consensus       405 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~----------  474 (517)
                      +..+++++.|+.|++||+........................++.++..+++++.||.+.+|+.......          
T Consensus       160 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~  239 (342)
T d1yfqa_         160 SSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR  239 (342)
T ss_dssp             SSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEE
T ss_pred             CCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceee
Confidence            9999999999999999997663333322222222223334445678889999999999999987643211          


Q ss_pred             -----EEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434          475 -----EILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSE  516 (517)
Q Consensus       475 -----~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~  516 (517)
                           ....+|...|++++|+|++ .+|+||+.||.|++||+.++++
T Consensus       240 ~~~~~~~~~~~~~~v~~l~~sp~~-~~lasg~~Dg~v~vWD~~~~~~  285 (342)
T d1yfqa_         240 CHRLNLKDTNLAYPVNSIEFSPRH-KFLYTAGSDGIISCWNLQTRKK  285 (342)
T ss_dssp             CCCCCTTCCSSCCCEEEEEECTTT-CCEEEEETTSCEEEEETTTTEE
T ss_pred             eeeeccCCCcccccceeEEecCCc-cEEEEECCCCEEEEEECCCCcE
Confidence                 1123467789999999999 6999999999999999988754

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=3.9e-27  Score=225.37  Aligned_cols=249  Identities=16%  Similarity=0.181  Sum_probs=179.9

Q ss_pred             EEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcE------EEEeCCCCCceEEEEEe---C----CCCeEEE
Q 042434          260 KHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGIC------KHTFGDHGFIVSSCAWF---P----DSKRLVC  326 (517)
Q Consensus       260 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~~~~v~~i~~~---~----~~~~l~~  326 (517)
                      ....++|.+.|.++++++  +++++++.|++|++||..+.+.      ......|...+..+...   +    ++..+++
T Consensus         7 ~~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s   84 (393)
T d1sq9a_           7 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT   84 (393)
T ss_dssp             EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred             eecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEE
Confidence            356689999999999874  6999999999999999866531      12222444443332221   1    2346789


Q ss_pred             eeCCCceeEEEEeCCCCe--eEeee------CcCCCceEEEEEccC-----CCEEEEEeCCCcEEEEECCCce-------
Q 042434          327 GSSDTEKGIFMCDCDGNE--IKAWR------GTRIPKVLDLAVTPD-----GENLISVLSDKDIRILNLGTYA-------  386 (517)
Q Consensus       327 ~~~d~~v~i~~~~~~~~~--~~~~~------~~~~~~i~~~~~~~~-----~~~l~~~~~dg~i~i~d~~~~~-------  386 (517)
                      ++.||.+++|........  .....      ..+...+..+++.++     +.++++++.||.+++||+....       
T Consensus        85 ~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~  164 (393)
T d1sq9a_          85 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT  164 (393)
T ss_dssp             EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred             EeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceee
Confidence            999999555544333211  11110      112235667777765     4578999999999999974321       


Q ss_pred             -------------EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEE------eCcccCceEEEeecC
Q 042434          387 -------------ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKY------TGHSQNKYVIRSCFG  447 (517)
Q Consensus       387 -------------~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~------~~~~~~~~~i~~~~~  447 (517)
                                   .....+...+.+++|+|++ ++++|+.|+.|++||+.+. .....+      .+|...   +.++.|
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~-~~~~~~~~~~~l~~h~~~---V~~l~~  239 (393)
T d1sq9a_         165 LNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL-RPLYNFESQHSMINNSNS---IRSVKF  239 (393)
T ss_dssp             TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT-EEEEEEECCC---CCCCC---EEEEEE
T ss_pred             eeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeeccc-ccccccccccccccccce---EEEccc
Confidence                         0111234458899999997 8899999999999999876 333332      344444   677778


Q ss_pred             CCCCcEEEEecCCCc---EEEEecCCCceeEEec-------------CCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCC
Q 042434          448 GLDGTFIASGSENSQ---IYIWNRRNSKPIEILS-------------GHSMTVNCVSWNPKRPKMLASASDDHTIRIWGP  511 (517)
Q Consensus       448 s~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~-------------~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~  511 (517)
                      +|+|++|++|+.|++   |++||+.+++++..+.             +|.+.|++++|+|++ .+|+|||.|++|++||+
T Consensus       240 spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~-~~l~S~s~D~~v~vWd~  318 (393)
T d1sq9a_         240 SPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG-ETLCSAGWDGKLRFWDV  318 (393)
T ss_dssp             CSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSS-SEEEEEETTSEEEEEET
T ss_pred             ccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCC-CeeEEECCCCEEEEEEC
Confidence            999999999999874   9999999998887764             799999999999999 79999999999999999


Q ss_pred             CCCCC
Q 042434          512 CQSSE  516 (517)
Q Consensus       512 ~~~~~  516 (517)
                      .+++.
T Consensus       319 ~~g~~  323 (393)
T d1sq9a_         319 KTKER  323 (393)
T ss_dssp             TTTEE
T ss_pred             CCCCE
Confidence            98754

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1e-25  Score=205.34  Aligned_cols=236  Identities=19%  Similarity=0.336  Sum_probs=187.1

Q ss_pred             EEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEE
Q 042434          259 LKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMC  338 (517)
Q Consensus       259 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~  338 (517)
                      .+.....|...|+|++|  |+++||+|+.||+|+|||+.+++++.++.+|...|++++|  ++++|++|+.|+.  +.+|
T Consensus         7 ~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~--i~~~   80 (293)
T d1p22a2           7 RIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDST--VRVW   80 (293)
T ss_dssp             CEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSC--EEEE
T ss_pred             EEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccc--cccc
Confidence            34556678899998765  7899999999999999999999999999999999999887  6789999999999  7888


Q ss_pred             eCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-----EEeeccCCCeeEEEEcCCCCEEEEEeC
Q 042434          339 DCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-----ERVISEEHPITSLSVSVDCKNFIVNLN  413 (517)
Q Consensus       339 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~i~~~~~s~~~~~l~~~~~  413 (517)
                      +..............  .....+.+....++++..++.+.+||.....     .....+...+....+.  ...+++++.
T Consensus        81 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~  156 (293)
T d1p22a2          81 DVNTGEMLNTLIHHC--EAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASG  156 (293)
T ss_dssp             ESSSCCEEEEECCCC--SCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEET
T ss_pred             ccccccccccccccc--cccccccccccceeecccccceeEeeccccccccccccccccccccccceec--ccccccccC
Confidence            887655544443332  3334556677789999999999999998765     2233445556555554  567889999


Q ss_pred             CCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCC
Q 042434          414 SQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKR  493 (517)
Q Consensus       414 d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~  493 (517)
                      |+.+++||+++. .....+.++.....   .+  ++++.++++++.||.|++||+++++.+....+|...+..+.  +++
T Consensus       157 d~~i~~~d~~~~-~~~~~~~~~~~~v~---~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~--~~~  228 (293)
T d1p22a2         157 DRTIKVWNTSTC-EFVRTLNGHKRGIA---CL--QYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIR--FDN  228 (293)
T ss_dssp             TSEEEEEETTTC-CEEEEEECCSSCEE---EE--EEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE--CCS
T ss_pred             CCceeeecCCCC-cEEEEEcccccccc---cc--cCCCCeEEEecCCCEEEEEecccceeeeeecccceeeeecc--ccc
Confidence            999999999877 56666766665432   22  34677999999999999999999999999999998887654  455


Q ss_pred             CcEEEEeeCCCcEEEeCCCC
Q 042434          494 PKMLASASDDHTIRIWGPCQ  513 (517)
Q Consensus       494 ~~~l~s~~~dg~v~iw~~~~  513 (517)
                       .+|++++.||.|++||+..
T Consensus       229 -~~l~sg~~dg~i~iwd~~~  247 (293)
T d1p22a2         229 -KRIVSGAYDGKIKVWDLVA  247 (293)
T ss_dssp             -SEEEEEETTSCEEEEEHHH
T ss_pred             -eEEEEEcCCCEEEEEECCC
Confidence             6899999999999998643

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.95  E-value=2.4e-26  Score=216.77  Aligned_cols=270  Identities=9%  Similarity=0.002  Sum_probs=200.4

Q ss_pred             cCCCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCC--cEEEEEecCCCeeeEEEEeccCCCCEEEEEECC
Q 042434          200 YEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDC--SAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP  277 (517)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg--~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~  277 (517)
                      ..+....++.. ...+..+ +|.+.|.+++|||||++|++++.+.  .|++||..++.    ...+..|...|.+++|+|
T Consensus        22 ~~g~v~v~d~~-~~~~~~~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~----~~~~~~~~~~v~~~~~sp   95 (360)
T d1k32a3          22 SRGQAFIQDVS-GTYVLKV-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK----AEKFEENLGNVFAMGVDR   95 (360)
T ss_dssp             ETTEEEEECTT-SSBEEEC-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC----EEECCCCCCSEEEEEECT
T ss_pred             ECCeEEEEECC-CCcEEEc-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc----EEEeeCCCceEEeeeecc
Confidence            33444445443 3444444 6999999999999999998876553  79999997653    245778999999999999


Q ss_pred             CCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCC--------ceeEEEEeCCCCeeEeee
Q 042434          278 DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDT--------EKGIFMCDCDGNEIKAWR  349 (517)
Q Consensus       278 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~--------~v~i~~~~~~~~~~~~~~  349 (517)
                      |+++|++++.++.+++|++.+++....+..+...+.+++|+|+|++|+.++.++        .-.+++|+..+.......
T Consensus        96 dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~  175 (360)
T d1k32a3          96 NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT  175 (360)
T ss_dssp             TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS
T ss_pred             cccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeec
Confidence            999999999999999999999999999989999999999999999998764322        123788999887766555


Q ss_pred             CcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceEE---------eecc----------------------------
Q 042434          350 GTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAER---------VISE----------------------------  392 (517)
Q Consensus       350 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---------~~~~----------------------------  392 (517)
                      .+. ..+..+.|+|+|+.|++++.++.+.+||.......         ...+                            
T Consensus       176 ~~~-~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  254 (360)
T d1k32a3         176 TEN-SHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYK  254 (360)
T ss_dssp             CSS-SBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGG
T ss_pred             ccc-cccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeeccccc
Confidence            444 47888999999999999999999999986543200         0000                            


Q ss_pred             --------CCCeeEEEEcCCCCE-------------EEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCC
Q 042434          393 --------EHPITSLSVSVDCKN-------------FIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDG  451 (517)
Q Consensus       393 --------~~~i~~~~~s~~~~~-------------l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~  451 (517)
                              ......+...+++..             ++.++.++.+++||+.++.  ...+.+      .+..+.|+|||
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~--~~~~~~------~v~~~~~SpDG  326 (360)
T d1k32a3         255 RSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK--VTEVKN------NLTDLRLSADR  326 (360)
T ss_dssp             GCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCC--EEEEEE------EEEEEEECTTS
T ss_pred             ceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCe--EEEecC------CcCEEEECCCC
Confidence                    011222333332222             3344457789999987752  222221      25566779999


Q ss_pred             cEEEEecCCCcEEEEecCCCceeEEecCCCCCe
Q 042434          452 TFIASGSENSQIYIWNRRNSKPIEILSGHSMTV  484 (517)
Q Consensus       452 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v  484 (517)
                      ++|++++.||.|++||+.+++...++..+..++
T Consensus       327 ~~l~~~~~Dg~i~v~d~~~~~~~~~~~~d~~~~  359 (360)
T d1k32a3         327 KTVMVRKDDGKIYTFPLEKPEDERTVETDKRPL  359 (360)
T ss_dssp             CEEEEEETTSCEEEEESSCTTSCEECCCCSSCE
T ss_pred             CEEEEEECCCeEEEEECCCCCcceEEEeccccc
Confidence            999999999999999999999888887665554

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.94  E-value=2.9e-25  Score=214.58  Aligned_cols=315  Identities=10%  Similarity=0.083  Sum_probs=214.6

Q ss_pred             ccccCC-CcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeee--EEEEeccCCCCEEEE
Q 042434          197 ISLYED-HCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLT--LKHTLRSHQNPVSFV  273 (517)
Q Consensus       197 ~~~~~~-~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~--~~~~~~~h~~~v~~l  273 (517)
                      ++..++ ....|+....+.+.++..|. .+..++|||||++|++++.||+|++||+.++....  .+....+|.+.+.++
T Consensus        36 V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~  114 (426)
T d1hzua2          36 VTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSK  114 (426)
T ss_dssp             EEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECC
T ss_pred             EEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEee
Confidence            444444 45567777888999998875 58999999999999999999999999998765422  223334566777888


Q ss_pred             EECCCCCeEEEE-eCCCeEEEEECCCCcEEEEeCCCCCce-----------EEEEEeCCCCeEEEeeCCCceeEEEEeCC
Q 042434          274 AWSPDDTKLLTC-GNAEVLKLWDVETGICKHTFGDHGFIV-----------SSCAWFPDSKRLVCGSSDTEKGIFMCDCD  341 (517)
Q Consensus       274 ~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~v-----------~~i~~~~~~~~l~~~~~d~~v~i~~~~~~  341 (517)
                      +|+|||++++++ ..++.+++||..++.+......+...+           ..+.+++++..++....+.. .+..++..
T Consensus       115 ~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~-~i~~~~~~  193 (426)
T d1hzua2         115 FKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETG-KVLLVNYK  193 (426)
T ss_dssp             STTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTT-EEEEEECS
T ss_pred             eecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCC-eEEEEEec
Confidence            899999987554 578999999999999888776554433           44555555555554444322 14344433


Q ss_pred             C-CeeEeeeCcCCCceEEEEEccCCCEEEEEeC-CCcEEEEECCCceEEe-e---ccCCCeeEEEEcCCCCE-E--EEEe
Q 042434          342 G-NEIKAWRGTRIPKVLDLAVTPDGENLISVLS-DKDIRILNLGTYAERV-I---SEEHPITSLSVSVDCKN-F--IVNL  412 (517)
Q Consensus       342 ~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~-~---~~~~~i~~~~~s~~~~~-l--~~~~  412 (517)
                      . .............+..+.++|++++++++.. +..+.+++..+..... .   ..........+...+.. +  +...
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (426)
T d1hzua2         194 DIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHL  273 (426)
T ss_dssp             SSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECT
T ss_pred             cccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccC
Confidence            2 2222222233346889999999998877764 5578899998887222 1   12222333333333322 2  2334


Q ss_pred             CCCeEEEEEcCCC------CccceEEeCcccCceEEEeecCCCCCcEEEE-------ecCCCcEEEEecCCCceeEEec-
Q 042434          413 NSQEIHMWDVAGK------WEKPFKYTGHSQNKYVIRSCFGGLDGTFIAS-------GSENSQIYIWNRRNSKPIEILS-  478 (517)
Q Consensus       413 ~d~~i~~~d~~~~------~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~-------~~~dg~i~iwd~~~~~~~~~~~-  478 (517)
                      .++.+.+|+....      +.....+.+|...   +..+.++||+++|++       ++.|++|++||+.+++...++. 
T Consensus       274 ~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~---v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~  350 (426)
T d1hzua2         274 GDGSISLIGTDPKNHPQYAWKKVAELQGQGGG---SLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLP  350 (426)
T ss_dssp             TTCEEEEEECCTTTCTTTBTSEEEEEECSSSC---CCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEEC
T ss_pred             CCceEEEeeccccccccccceEeEEEecCCCc---eeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEec
Confidence            5778888886543      2445567777665   445567999999994       5568899999999998766542 


Q ss_pred             --------CCCCCeeEEEecCCCCcEEEEe----eCCCcEEEeCCCCCCC
Q 042434          479 --------GHSMTVNCVSWNPKRPKMLASA----SDDHTIRIWGPCQSSE  516 (517)
Q Consensus       479 --------~h~~~v~~v~~~~~~~~~l~s~----~~dg~v~iw~~~~~~~  516 (517)
                              .|...|.+++|+|||..+++++    +.||.|+|||.++.+.
T Consensus       351 ~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~  400 (426)
T d1hzua2         351 IAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKL  400 (426)
T ss_dssp             HHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEE
T ss_pred             cchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeE
Confidence                    4566799999999995555664    3688999999998763

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.94  E-value=1.2e-23  Score=192.86  Aligned_cols=265  Identities=16%  Similarity=0.120  Sum_probs=200.2

Q ss_pred             EEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEE-EEeCCCeEEEEECCCCcEEEEeCCCCCceEEEE
Q 042434          238 ASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLL-TCGNAEVLKLWDVETGICKHTFGDHGFIVSSCA  316 (517)
Q Consensus       238 ~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~  316 (517)
                      ++++.|++|.+||+.++   +.+.++.. ...+..++|+|||++|+ +++.++.|++||+.+++.+..+..+. .+..++
T Consensus         6 V~~~~~~~v~v~D~~t~---~~~~~i~~-g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~   80 (301)
T d1l0qa2           6 IANSESDNISVIDVTSN---KVTATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVA   80 (301)
T ss_dssp             EEETTTTEEEEEETTTT---EEEEEEEC-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEE
T ss_pred             EEECCCCEEEEEECCCC---eEEEEEEC-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-cccccc
Confidence            45678999999999766   44455543 35678999999999875 66778999999999999999886655 468899


Q ss_pred             EeCCCCeEEEeeCC-CceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEE-EeCCCcEEEEECCCce-EEeeccC
Q 042434          317 WFPDSKRLVCGSSD-TEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLIS-VLSDKDIRILNLGTYA-ERVISEE  393 (517)
Q Consensus       317 ~~~~~~~l~~~~~d-~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~-~~~~~~~  393 (517)
                      |++++..+++++.+ +.  +..|+..+.......... ....++.++|++..++. +..++.+.+|+..+.. .......
T Consensus        81 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (301)
T d1l0qa2          81 VSPDGKQVYVTNMASST--LSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG  157 (301)
T ss_dssp             ECTTSSEEEEEETTTTE--EEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred             cccccccccccccccce--eeecccccceeeeecccc-ccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccC
Confidence            99999977766554 44  778888766544433333 36788999999997754 4567889999999887 5555666


Q ss_pred             CCeeEEEEcCCCCEEEEEeCC-CeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEec---CCCcEEEEecC
Q 042434          394 HPITSLSVSVDCKNFIVNLNS-QEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGS---ENSQIYIWNRR  469 (517)
Q Consensus       394 ~~i~~~~~s~~~~~l~~~~~d-~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~iwd~~  469 (517)
                      ..+..+.++|+++.++++..+ +.+.+|+.... ...........    .....+++++..+++++   .++.|++||..
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~  232 (301)
T d1l0qa2         158 RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN-SVIDTVKVEAA----PSGIAVNPEGTKAYVTNVDKYFNTVSMIDTG  232 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEECSSE----EEEEEECTTSSEEEEEEECSSCCEEEEEETT
T ss_pred             CCceEEEeeccccceeeecccccccccccccce-eeeecccccCC----cceeeccccccccccccccceeeeeeeeecC
Confidence            778999999999998888765 56667776554 33333333222    33344578888776654   34689999999


Q ss_pred             CCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434          470 NSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSE  516 (517)
Q Consensus       470 ~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~  516 (517)
                      +++.+..+..+ ..+.+++|+|+|..++++++.|+.|++||+++++.
T Consensus       233 t~~~~~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~  278 (301)
T d1l0qa2         233 TNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTI  278 (301)
T ss_dssp             TTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             CCeEEEEEcCC-CCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeE
Confidence            99999888754 56899999999954567888999999999998764

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.93  E-value=4.7e-25  Score=212.59  Aligned_cols=314  Identities=9%  Similarity=-0.017  Sum_probs=209.0

Q ss_pred             cccccCCC-cccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCee--eEEEEeccCCCCEEE
Q 042434          196 AISLYEDH-CCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKL--TLKHTLRSHQNPVSF  272 (517)
Q Consensus       196 ~~~~~~~~-~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~--~~~~~~~~h~~~v~~  272 (517)
                      .+...++. ...++....+++..+..|. .+..++|||||+++++++.||.|++||+.+++..  ..+.....|.+.+.+
T Consensus        35 ~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s  113 (432)
T d1qksa2          35 SVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETS  113 (432)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEEC
T ss_pred             EEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEe
Confidence            34555554 4467777889999998774 6999999999999999999999999999766432  223334456667777


Q ss_pred             EEECCCCCeE-EEEeCCCeEEEEECCCCcEEEEeCCC-----------CCceEEEEEeCCCCeEEE-eeCCCceeEEEEe
Q 042434          273 VAWSPDDTKL-LTCGNAEVLKLWDVETGICKHTFGDH-----------GFIVSSCAWFPDSKRLVC-GSSDTEKGIFMCD  339 (517)
Q Consensus       273 l~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~-----------~~~v~~i~~~~~~~~l~~-~~~d~~v~i~~~~  339 (517)
                      ..|+|||++| ++++.+++|++||..+++++..+..+           ......+.++|++..++. ...++.  ++.|+
T Consensus       114 ~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~--i~~~d  191 (432)
T d1qksa2         114 KMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK--ILLVD  191 (432)
T ss_dssp             CSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE--EEEEE
T ss_pred             cccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCe--EEEEE
Confidence            8889999986 67788999999999999988876543           345667889999887655 445566  88888


Q ss_pred             CCCC-eeEeeeCcCCCceEEEEEccCCCEEEEEeC-CCcEEEEECCCceEE-eec------cCCCeeEEEEcCCCCEEEE
Q 042434          340 CDGN-EIKAWRGTRIPKVLDLAVTPDGENLISVLS-DKDIRILNLGTYAER-VIS------EEHPITSLSVSVDCKNFIV  410 (517)
Q Consensus       340 ~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~-~~~------~~~~i~~~~~s~~~~~l~~  410 (517)
                      .... ............+..++++|+|+++++++. ++.+.++|..+.... ...      +........+...+.....
T Consensus       192 ~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~  271 (432)
T d1qksa2         192 YTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWAT  271 (432)
T ss_dssp             TTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEE
T ss_pred             ccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecc
Confidence            7653 333333333346889999999998777765 557888998876621 111      1122233333333333333


Q ss_pred             Ee-CCCeEEEEEcCCCC------ccceEEeCc----------ccCceEE------------EeecCCCCCcEEEEecCCC
Q 042434          411 NL-NSQEIHMWDVAGKW------EKPFKYTGH----------SQNKYVI------------RSCFGGLDGTFIASGSENS  461 (517)
Q Consensus       411 ~~-~d~~i~~~d~~~~~------~~~~~~~~~----------~~~~~~i------------~~~~~s~~~~~l~~~~~dg  461 (517)
                      .. .++.+.+|+.....      ........+          .......            ..++ .||++.+++++.|+
T Consensus       272 ~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~-vpDg~~la~~s~d~  350 (432)
T d1qksa2         272 SHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVA-VFDIKAMTGDGSDP  350 (432)
T ss_dssp             EBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEE-EEEGGGCCCSSSCC
T ss_pred             cccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEE-EEechhhcccccCC
Confidence            22 25566666653221      111111111          1111110            1122 27888899999999


Q ss_pred             cEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEee----CCCcEEEeCCCCCCC
Q 042434          462 QIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS----DDHTIRIWGPCQSSE  516 (517)
Q Consensus       462 ~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~----~dg~v~iw~~~~~~~  516 (517)
                      .+++|++.++..+   ..|...|.+++|+|||..++++..    .||.|.|||.++.+.
T Consensus       351 ~~k~w~~~~~~~l---~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~  406 (432)
T d1qksa2         351 EFKTLPIAEWAGI---TEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLEL  406 (432)
T ss_dssp             CEEEECHHHHHTC---CSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred             ceEeccccccccc---CCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceE
Confidence            9999998655433   357778999999999954445542    478899999988763

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=4.6e-24  Score=194.49  Aligned_cols=259  Identities=13%  Similarity=0.039  Sum_probs=193.4

Q ss_pred             hccccccCCCCCccccccCCCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEE
Q 042434          183 SQIDSCQYHNSSVAISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHT  262 (517)
Q Consensus       183 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~  262 (517)
                      ..+.+..+++   .++...|.....+....    ...+|.+.|.++++++++ .+++++.|+++++|+....        
T Consensus        14 ~~I~~l~~s~---l~sgs~Dg~v~~Wd~~~----~~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~--------   77 (287)
T d1pgua2          14 KGITALTVNP---LISGSYDGRIMEWSSSS----MHQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKH--------   77 (287)
T ss_dssp             SCEEEEETTT---TEEEETTSCEEETTTTE----EECCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEE--------
T ss_pred             CceEEEEECc---EEEEeCCCeEEEEECCC----CCCCCCCCEEEEEecCCC-eEEEEeecccccccccccc--------
Confidence            3444455543   34555555554444332    346899999999998765 5789999999999987421        


Q ss_pred             eccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC
Q 042434          263 LRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG  342 (517)
Q Consensus       263 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~  342 (517)
                        .....+.++++++++..++++ .++.+.+|+..+++.+..+..+ ..+  .++++++..+++++.++.. +.+|+...
T Consensus        78 --~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~v~~~~~~~-v~~~~~~~  150 (287)
T d1pgua2          78 --EFGSQPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSVRLN-SPG--SAVSLSQNYVAVGLEEGNT-IQVFKLSD  150 (287)
T ss_dssp             --ECSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEEECS-SCE--EEEEECSSEEEEEETTTSC-EEEEETTE
T ss_pred             --ccccceeeeeeccCCceEEEe-ecccceeeeccceeeeeecccc-cee--eeeeccCcceeeeccccce-eeeeeccc
Confidence              134567889999988777765 5667899999999988887543 333  4567788888888887631 77788764


Q ss_pred             Cee-EeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceE---EeeccCCCeeEEEEcCC----------CCEE
Q 042434          343 NEI-KAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAE---RVISEEHPITSLSVSVD----------CKNF  408 (517)
Q Consensus       343 ~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~i~~~~~s~~----------~~~l  408 (517)
                      ... ......+...+.+++|+|++.+|++++.||.|++||+.+...   ....|..++.+++|+|.          +.++
T Consensus       151 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l  230 (287)
T d1pgua2         151 LEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLV  230 (287)
T ss_dssp             EEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEE
T ss_pred             cceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCee
Confidence            333 334445556899999999999999999999999999998873   23467788999999875          4689


Q ss_pred             EEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEec
Q 042434          409 IVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNR  468 (517)
Q Consensus       409 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~  468 (517)
                      ++++.|+.|++||++........+.+|...   +..+.|+|++ .+++++.||.|++|++
T Consensus       231 ~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~---V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         231 ATGSLDTNIFIYSVKRPMKIIKALNAHKDG---VNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEEETTSCEEEEESSCTTCCEEETTSSTTC---EEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             EeecCCCeEEEEECCCCCeEEEEeCCCCCC---eEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            999999999999998765666666778776   5555567876 5888999999999986

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.92  E-value=1.2e-23  Score=196.13  Aligned_cols=269  Identities=10%  Similarity=-0.013  Sum_probs=191.0

Q ss_pred             CEEEEeeCCCcEEEEEecCCCeeeEEEEecc--CCCCEEEEEECCCCCeE-EEEeCCCeEEEEECCCCcEEEEeCCCC--
Q 042434          235 EYLASSSSDCSAIIWKVLEDSKLTLKHTLRS--HQNPVSFVAWSPDDTKL-LTCGNAEVLKLWDVETGICKHTFGDHG--  309 (517)
Q Consensus       235 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~--h~~~v~~l~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~--  309 (517)
                      +|+++++.|++|.|||+.+.   +.+.++..  +...+.+++|+|||+++ ++++.++.|.+||+.+++.+..+..+.  
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~---~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~   78 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKM---AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE   78 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTT---EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT
T ss_pred             eEEEEEcCCCEEEEEECCCC---eEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCc
Confidence            58999999999999999766   44455543  44568899999999987 466789999999999999988876543  


Q ss_pred             ---CceEEEEEeCCCCeEEEeeCCC----------ceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCc
Q 042434          310 ---FIVSSCAWFPDSKRLVCGSSDT----------EKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKD  376 (517)
Q Consensus       310 ---~~v~~i~~~~~~~~l~~~~~d~----------~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  376 (517)
                         ..+..++|+|++++++++..+.          ...+..|+............. ..+..++++|+|+++++++.  .
T Consensus        79 ~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~--~  155 (337)
T d1pbyb_          79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-RQITMLAWARDGSKLYGLGR--D  155 (337)
T ss_dssp             EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-SSCCCEEECTTSSCEEEESS--S
T ss_pred             ccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecccc-CCceEEEEcCCCCEEEEEcC--C
Confidence               2345789999999998886532          123777888765554333332 36788999999999998864  4


Q ss_pred             EEEEECCCce-EEeeccCCCeeEEEEcCCCC------------------------EEEEEeCCCeEEEEEcCCCCccceE
Q 042434          377 IRILNLGTYA-ERVISEEHPITSLSVSVDCK------------------------NFIVNLNSQEIHMWDVAGKWEKPFK  431 (517)
Q Consensus       377 i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~------------------------~l~~~~~d~~i~~~d~~~~~~~~~~  431 (517)
                      +.+||..+.. ..............++|++.                        .......++.+.+||...+......
T Consensus       156 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (337)
T d1pbyb_         156 LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMRE  235 (337)
T ss_dssp             EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEE
T ss_pred             cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEE
Confidence            7789998876 22222211111122222221                        1112223446888888766333333


Q ss_pred             EeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCC
Q 042434          432 YTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGP  511 (517)
Q Consensus       432 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~  511 (517)
                      +..+...   .....+++++.+++++  ++.|++||+.+++.+..+. +...+.+++|+|+| ..|++++.||.|+|||.
T Consensus       236 ~~~~~~~---~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG-~~l~v~~~~~~i~v~D~  308 (337)
T d1pbyb_         236 VRIMDVF---YFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDG-STVWLGGALGDLAAYDA  308 (337)
T ss_dssp             EEECSSC---EEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTS-CEEEEESBSSEEEEEET
T ss_pred             ecCCCcc---eEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCC-CEEEEEeCCCcEEEEEC
Confidence            3333332   3334458899888766  5889999999999999886 66788999999999 68899999999999999


Q ss_pred             CCCCC
Q 042434          512 CQSSE  516 (517)
Q Consensus       512 ~~~~~  516 (517)
                      .++++
T Consensus       309 ~t~~~  313 (337)
T d1pbyb_         309 ETLEK  313 (337)
T ss_dssp             TTCCE
T ss_pred             CCCcE
Confidence            98775

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.91  E-value=1.3e-23  Score=196.47  Aligned_cols=277  Identities=13%  Similarity=0.063  Sum_probs=188.3

Q ss_pred             EEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEec-cCCCCEEEEEECCCCCeEE-EEeCCCeEEEEECCCCcEEEEe
Q 042434          228 VQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLR-SHQNPVSFVAWSPDDTKLL-TCGNAEVLKLWDVETGICKHTF  305 (517)
Q Consensus       228 ~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~  305 (517)
                      ++|+++++||++++.|++|.+||+.++   +.+.++. .|...+.+++|+|||++++ +++.++.|.+||+.+++.+..+
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~---~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~   78 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASD---TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA   78 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTT---EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCC---CEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeee
Confidence            478999999999999999999999766   5556655 4566788999999999875 5567899999999999988776


Q ss_pred             CCCC------CceEEEEEeCCCCeEEEeeCCCce----------eEEEEeCCCCee-EeeeCc-CCCceEEEEEccCCCE
Q 042434          306 GDHG------FIVSSCAWFPDSKRLVCGSSDTEK----------GIFMCDCDGNEI-KAWRGT-RIPKVLDLAVTPDGEN  367 (517)
Q Consensus       306 ~~~~------~~v~~i~~~~~~~~l~~~~~d~~v----------~i~~~~~~~~~~-~~~~~~-~~~~i~~~~~~~~~~~  367 (517)
                      ....      ..+..++|+|||+++++++.+...          .+..|+...... ...... ....+..+.+++++..
T Consensus        79 ~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (346)
T d1jmxb_          79 NLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSL  158 (346)
T ss_dssp             ESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCE
T ss_pred             cccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEE
Confidence            5332      235678999999999887643211          145555543211 111111 1123455666777766


Q ss_pred             EEEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEE--------------------------EEEeCCCeEEEE
Q 042434          368 LISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNF--------------------------IVNLNSQEIHMW  420 (517)
Q Consensus       368 l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l--------------------------~~~~~d~~i~~~  420 (517)
                      ++.   ++.+.+|+..+.. ............+.++|++..+                          .++..++.+.+|
T Consensus       159 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (346)
T d1jmxb_         159 YVA---GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV  235 (346)
T ss_dssp             EEE---SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEE
T ss_pred             EEe---CCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEE
Confidence            554   3568899988766 3333333334444455544332                          223334557777


Q ss_pred             EcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEe
Q 042434          421 DVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASA  500 (517)
Q Consensus       421 d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~  500 (517)
                      |..+..........+...   +..+.+++++.+++.+. ++.|++||..+++.+..+. +...+.+++|+||| ..++++
T Consensus       236 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG-~~l~v~  309 (346)
T d1jmxb_         236 DLKTGKTHTQEFADLTEL---YFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKG-DKLYLG  309 (346)
T ss_dssp             ETTTCCEEEEEEEECSSC---EEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECSSS-SCEEEE
T ss_pred             ECCCCceEEEEeecccce---eEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCC-CEEEEE
Confidence            876653333334334333   22333466777777665 4579999999999998886 45679999999999 688899


Q ss_pred             eCCCcEEEeCCCCCCC
Q 042434          501 SDDHTIRIWGPCQSSE  516 (517)
Q Consensus       501 ~~dg~v~iw~~~~~~~  516 (517)
                      +.||.|+|||+.+++.
T Consensus       310 ~~d~~v~v~D~~t~~~  325 (346)
T d1jmxb_         310 GTFNDLAVFNPDTLEK  325 (346)
T ss_dssp             SBSSEEEEEETTTTEE
T ss_pred             eCCCcEEEEECccCCE
Confidence            9999999999998764

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.90  E-value=4.6e-22  Score=191.82  Aligned_cols=271  Identities=11%  Similarity=0.062  Sum_probs=189.2

Q ss_pred             EEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEE--e---CCCCC
Q 042434          236 YLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHT--F---GDHGF  310 (517)
Q Consensus       236 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~---~~~~~  310 (517)
                      ++++++.||+|+|||..++   +.+.++..| ..+..++|+|||+++++++.|++|++||+.+++....  +   ..|..
T Consensus        34 ~~V~~~~dg~v~vwD~~t~---~~~~~l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~  109 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSK---KIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARS  109 (426)
T ss_dssp             EEEEETTTTEEEEEETTTC---SEEEEEECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEE
T ss_pred             EEEEEcCCCEEEEEECCCC---cEEEEEeCC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcc
Confidence            5678889999999999776   455667666 4699999999999999999999999999999875432  2   24555


Q ss_pred             ceEEEEEeCCCCeEEEee-CCCceeEEEEeCCCCeeEeeeCc-----------CCCceEEEEEccCCCEEEEEeC-CCcE
Q 042434          311 IVSSCAWFPDSKRLVCGS-SDTEKGIFMCDCDGNEIKAWRGT-----------RIPKVLDLAVTPDGENLISVLS-DKDI  377 (517)
Q Consensus       311 ~v~~i~~~~~~~~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~-----------~~~~i~~~~~~~~~~~l~~~~~-dg~i  377 (517)
                      .+.+++|+|||+++++++ .++.  +.+||............           ..+....+..++++..++.... .+.+
T Consensus       110 ~~~s~~~spDG~~l~v~~~~~~~--v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i  187 (426)
T d1hzua2         110 VESSKFKGYEDRYTIAGAYWPPQ--FAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKV  187 (426)
T ss_dssp             EEECCSTTCTTTEEEEEEEESSE--EEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred             eEEeeeecCCCCEEEEeecCCCe--EEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeE
Confidence            667778889999876554 6777  88888876554333221           1224456777777776665544 4566


Q ss_pred             EEEECCCce---EEeeccCCCeeEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCccceEEeCcccC--ceEEEeecCCCCC
Q 042434          378 RILNLGTYA---ERVISEEHPITSLSVSVDCKNFIVNLN-SQEIHMWDVAGKWEKPFKYTGHSQN--KYVIRSCFGGLDG  451 (517)
Q Consensus       378 ~i~d~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~--~~~i~~~~~s~~~  451 (517)
                      .+++.....   .........+..+.++|++++++++.. +..+.+++..+. ............  .......  .+..
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~  264 (426)
T d1hzua2         188 LLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDR-RLSALVDVGKTPHPGRGANFV--HPKY  264 (426)
T ss_dssp             EEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTT-EEEEEEECSSCCCCSCCEEEE--ETTT
T ss_pred             EEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccc-cEEEEeccCCcccccceeeee--cCCC
Confidence            666665543   445567788999999999999887765 567889998776 333333221111  1111111  1222


Q ss_pred             c--EEEEecCCCcEEEEecCC-------CceeEEecCCCCCeeEEEecCCCCcEEE-------EeeCCCcEEEeCCCCCC
Q 042434          452 T--FIASGSENSQIYIWNRRN-------SKPIEILSGHSMTVNCVSWNPKRPKMLA-------SASDDHTIRIWGPCQSS  515 (517)
Q Consensus       452 ~--~l~~~~~dg~i~iwd~~~-------~~~~~~~~~h~~~v~~v~~~~~~~~~l~-------s~~~dg~v~iw~~~~~~  515 (517)
                      .  ..++.+.|+.+.+|+...       ++...++.+|...+..++|+|++ ..|+       +++.|++|+|||+.+++
T Consensus       265 ~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg-~~l~v~~~~~~s~~~~~tv~vwd~~t~~  343 (426)
T d1hzua2         265 GPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKS-SHLYVDTTFNPDARISQSVAVFDLKNLD  343 (426)
T ss_dssp             EEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTC-SEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred             CceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCC-ceEEEeecCCCCcccCCEEEEEECCCCC
Confidence            2  223345577777777543       47888999999999999999999 5676       45678999999998876


Q ss_pred             C
Q 042434          516 E  516 (517)
Q Consensus       516 ~  516 (517)
                      +
T Consensus       344 ~  344 (426)
T d1hzua2         344 A  344 (426)
T ss_dssp             S
T ss_pred             c
Confidence            4

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.90  E-value=2.4e-20  Score=170.55  Aligned_cols=264  Identities=14%  Similarity=0.097  Sum_probs=197.8

Q ss_pred             CCcccccCCCcccEEEeccccCcEEEEEECCCCCEEE-EeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCC
Q 042434          202 DHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLA-SSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDT  280 (517)
Q Consensus       202 ~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~-t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~  280 (517)
                      +....++....+.++++... +.+..++|+|||++|+ +++.++.|++||+.++   ..+.++..|. .+..++|++++.
T Consensus        12 ~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~---~~~~~~~~~~-~~~~~~~~~~~~   86 (301)
T d1l0qa2          12 DNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATN---NVIATVPAGS-SPQGVAVSPDGK   86 (301)
T ss_dssp             TEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT---EEEEEEECSS-SEEEEEECTTSS
T ss_pred             CEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCC---ceeeeeeccc-cccccccccccc
Confidence            44556676777778877644 5678999999999874 6677899999999766   4455666554 578999999998


Q ss_pred             eEEE-EeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeC-CCceeEEEEeCCCCeeEeeeCcCCCceEE
Q 042434          281 KLLT-CGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSS-DTEKGIFMCDCDGNEIKAWRGTRIPKVLD  358 (517)
Q Consensus       281 ~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~~~~~~i~~  358 (517)
                      .+++ +..++.+.+|+..+++....+..+ ..+.++.|+|++..++.++. ++.  +..|+............. ..+..
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~  162 (301)
T d1l0qa2          87 QVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKT--VSVINTVTKAVINTVSVG-RSPKG  162 (301)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTE--EEEEETTTTEEEEEEECC-SSEEE
T ss_pred             cccccccccceeeecccccceeeeecccc-ccceEEEeecCCCeeeeeeccccc--eeeeeccccceeeecccC-CCceE
Confidence            6654 556779999999999988887544 56788999999998766554 555  777887765544333332 25788


Q ss_pred             EEEccCCCEEEEEeCC-CcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeC---CCeEEEEEcCCCCccceEEe
Q 042434          359 LAVTPDGENLISVLSD-KDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLN---SQEIHMWDVAGKWEKPFKYT  433 (517)
Q Consensus       359 ~~~~~~~~~l~~~~~d-g~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~  433 (517)
                      +.++|++..+++++.+ +.+.+|+..... .........+..+++++++..++++..   ++.|.+||+.+. .....+.
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~-~~~~~~~  241 (301)
T d1l0qa2         163 IAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN-KITARIP  241 (301)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT-EEEEEEE
T ss_pred             EEeeccccceeeecccccccccccccceeeeecccccCCcceeeccccccccccccccceeeeeeeeecCCC-eEEEEEc
Confidence            9999999988877765 567778877766 444555667888999999998877654   468999999876 4444444


Q ss_pred             CcccCceEEEeecCCCCCcEE-EEecCCCcEEEEecCCCceeEEecC
Q 042434          434 GHSQNKYVIRSCFGGLDGTFI-ASGSENSQIYIWNRRNSKPIEILSG  479 (517)
Q Consensus       434 ~~~~~~~~i~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~  479 (517)
                      .+..    +..+.++|||++| ++++.|+.|++||+.+++++.++..
T Consensus       242 ~~~~----~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~v  284 (301)
T d1l0qa2         242 VGPD----PAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAV  284 (301)
T ss_dssp             CCSS----EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             CCCC----EEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEeC
Confidence            3322    4456679999987 5777899999999999999988863

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.88  E-value=1.2e-19  Score=171.39  Aligned_cols=289  Identities=7%  Similarity=-0.047  Sum_probs=195.1

Q ss_pred             eccccCcEEEEEECCCCCEEEEe-----eCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEe------
Q 042434          218 LTEHKNEVWFVQFSNNGEYLASS-----SSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCG------  286 (517)
Q Consensus       218 l~~h~~~v~~~~~s~~~~~l~t~-----~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~------  286 (517)
                      ...+.+++.+++++|||+.++..     +.++.|.+||..++   +.+.++..+..+  .++|+|||++|++++      
T Consensus        16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg---~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~   90 (373)
T d2madh_          16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSG---SILGHVNGGFLP--NPVAAHSGSEFALASTSFSRI   90 (373)
T ss_pred             cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCC---CEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcc
Confidence            34688999999999999988764     23457899998766   344556555443  799999999998875      


Q ss_pred             ----CCCeEEEEECCCCcEEEEeCCCCCce-------EEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCc
Q 042434          287 ----NAEVLKLWDVETGICKHTFGDHGFIV-------SSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPK  355 (517)
Q Consensus       287 ----~dg~i~iwd~~~~~~~~~~~~~~~~v-------~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~  355 (517)
                          .++.|.+||..+++.+..+..+....       ..+.|+++++.++....+..-.+..|+..........    ..
T Consensus        91 ~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~----~~  166 (373)
T d2madh_          91 AKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL----SS  166 (373)
T ss_pred             cccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEe----cc
Confidence                35789999999999988876554433       4477888888777665544333666766654432222    24


Q ss_pred             eEEEEEccCCCEE-EEEeCCCcEEEEECCCceEEee--------ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 042434          356 VLDLAVTPDGENL-ISVLSDKDIRILNLGTYAERVI--------SEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKW  426 (517)
Q Consensus       356 i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~--------~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~  426 (517)
                      ..++.++|+++.+ ++.+.|+.+.+||.........        ..........+++++. ++..+.++.+.+|+.....
T Consensus       167 ~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~  245 (373)
T d2madh_         167 PTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR-IVWPVYSGKILQADISAAG  245 (373)
T ss_pred             ceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCce-EEEecCCceEEEEEcCCCe
Confidence            5678899998754 6788999999999987762211        1111234455555554 4556678888898876542


Q ss_pred             ccc-eEEeCcccCce-------EEEeecCCCCC----------cEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEE
Q 042434          427 EKP-FKYTGHSQNKY-------VIRSCFGGLDG----------TFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVS  488 (517)
Q Consensus       427 ~~~-~~~~~~~~~~~-------~i~~~~~s~~~----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~  488 (517)
                      ... ...........       ......+++++          ..+++...++.+.+||..+++.+..+. +...+.+++
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a  324 (373)
T d2madh_         246 ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAIS  324 (373)
T ss_pred             EEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEE
Confidence            111 11111110000       01111223343          444556677889999999999998886 667889999


Q ss_pred             ecCCCCc-EEEEeeCCCcEEEeCCCCCCCC
Q 042434          489 WNPKRPK-MLASASDDHTIRIWGPCQSSEV  517 (517)
Q Consensus       489 ~~~~~~~-~l~s~~~dg~v~iw~~~~~~~v  517 (517)
                      |+|||.. ++++++.|++|++||+.+++.+
T Consensus       325 ~spDG~~~l~vt~~~d~~v~v~D~~tg~~~  354 (373)
T d2madh_         325 VAQDGGPDLYALSAGTEVLHIYDAGAGDQD  354 (373)
T ss_pred             ECCCCCEEEEEEeCCCCeEEEEECCCCCEE
Confidence            9999944 4578999999999999998753

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=2.2e-19  Score=166.67  Aligned_cols=276  Identities=10%  Similarity=0.045  Sum_probs=183.4

Q ss_pred             EEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEe-CCCeEEEEECCCCcEEEEe---CCCCCc
Q 042434          236 YLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCG-NAEVLKLWDVETGICKHTF---GDHGFI  311 (517)
Q Consensus       236 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~---~~~~~~  311 (517)
                      .+++++.|++|++|++.....+..+..+ .|.+.+..++|+|||++|++++ .|+.|++|++........+   ..+...
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~-~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~   84 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGS   84 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEE-cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCC
Confidence            4577789999999999866655555543 4778999999999999996555 5899999999765432222   234556


Q ss_pred             eEEEEEeCCCCeEEEeeC-CCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeC-CCcEEEEECCCce---
Q 042434          312 VSSCAWFPDSKRLVCGSS-DTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLS-DKDIRILNLGTYA---  386 (517)
Q Consensus       312 v~~i~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~---  386 (517)
                      +..++|+|||+++++++. ++.+.++.++............+...+.++.++|+++++++++. +..+.+|+.....   
T Consensus        85 p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~  164 (333)
T d1ri6a_          85 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV  164 (333)
T ss_dssp             CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred             ceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcce
Confidence            778999999999999886 45644444443332222233333446788999999998887765 4579999986643   


Q ss_pred             -----EEeeccCCCeeEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCccceE---EeC---cccCceEEEeecCCCCCcEE
Q 042434          387 -----ERVISEEHPITSLSVSVDCKNFIVNL-NSQEIHMWDVAGKWEKPFK---YTG---HSQNKYVIRSCFGGLDGTFI  454 (517)
Q Consensus       387 -----~~~~~~~~~i~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~---~~~---~~~~~~~i~~~~~s~~~~~l  454 (517)
                           ............++|++++..++... ..+...+++..........   ...   ............++++++++
T Consensus       165 ~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~  244 (333)
T d1ri6a_         165 AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHL  244 (333)
T ss_dssp             EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEE
T ss_pred             eeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCce
Confidence                 12223445678899999998877665 4567888887543222211   111   01111112233457888866


Q ss_pred             EEe-cCCCcEEEEecCCCceeEEec---CCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCC
Q 042434          455 ASG-SENSQIYIWNRRNSKPIEILS---GHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPC  512 (517)
Q Consensus       455 ~~~-~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~  512 (517)
                      +.. ..++.+.+|++..........   .+...+.+++|+|||..++++++.++.|++|+++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id  306 (333)
T d1ri6a_         245 YACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV  306 (333)
T ss_dssp             EEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             eeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEE
Confidence            654 566789999887654333322   3456688999999995455556677999999553

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.86  E-value=8.3e-20  Score=175.52  Aligned_cols=184  Identities=13%  Similarity=0.069  Sum_probs=139.6

Q ss_pred             EEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcE--EEEe---CCCCC
Q 042434          236 YLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGIC--KHTF---GDHGF  310 (517)
Q Consensus       236 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~---~~~~~  310 (517)
                      ++++.+.||+|.|||..++   +.+..+..| ..+..++|||||+++++++.||++++||+.+++.  ...+   ..|..
T Consensus        34 ~~v~~~d~g~v~v~D~~t~---~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~  109 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTY---EIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARS  109 (432)
T ss_dssp             EEEEETTTTEEEEEETTTC---CEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEE
T ss_pred             EEEEEcCCCEEEEEECCCC---cEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCC
Confidence            4688899999999999766   455666666 4699999999999999999999999999988763  2333   24455


Q ss_pred             ceEEEEEeCCCCeE-EEeeCCCceeEEEEeCCCCeeE-eeeC----------cCCCceEEEEEccCCCEE-EEEeCCCcE
Q 042434          311 IVSSCAWFPDSKRL-VCGSSDTEKGIFMCDCDGNEIK-AWRG----------TRIPKVLDLAVTPDGENL-ISVLSDKDI  377 (517)
Q Consensus       311 ~v~~i~~~~~~~~l-~~~~~d~~v~i~~~~~~~~~~~-~~~~----------~~~~~i~~~~~~~~~~~l-~~~~~dg~i  377 (517)
                      .+.+..|+|||+++ ++++.++.  +.+||..+.... .+..          ...+....+.++|+|..+ ++...++.|
T Consensus       110 ~~~s~~~SpDG~~l~vs~~~~~~--v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i  187 (432)
T d1qksa2         110 IETSKMEGWEDKYAIAGAYWPPQ--YVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI  187 (432)
T ss_dssp             EEECCSTTCTTTEEEEEEEETTE--EEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred             eEEecccCCCCCEEEEEcCCCCe--EEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeE
Confidence            56666778899986 66777888  888888754433 2221          123456778999999875 455668899


Q ss_pred             EEEECCCce---EEeeccCCCeeEEEEcCCCCEEEEEeC-CCeEEEEEcCCC
Q 042434          378 RILNLGTYA---ERVISEEHPITSLSVSVDCKNFIVNLN-SQEIHMWDVAGK  425 (517)
Q Consensus       378 ~i~d~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~-d~~i~~~d~~~~  425 (517)
                      .+||..+.+   .........+..++|+|+|+++++++. ++.+.++|..+.
T Consensus       188 ~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~  239 (432)
T d1qksa2         188 LLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG  239 (432)
T ss_dssp             EEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred             EEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccc
Confidence            999988765   334456677899999999998887776 557888998765

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.85  E-value=6.5e-20  Score=170.34  Aligned_cols=264  Identities=13%  Similarity=0.069  Sum_probs=186.1

Q ss_pred             cCCCcccccCCCcccEEEecc--ccCcEEEEEECCCCCEE-EEeeCCCcEEEEEecCCCeeeEEEEeccCC-----CCEE
Q 042434          200 YEDHCCGRDQIPTETVQILTE--HKNEVWFVQFSNNGEYL-ASSSSDCSAIIWKVLEDSKLTLKHTLRSHQ-----NPVS  271 (517)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~l~~--h~~~v~~~~~s~~~~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~-----~~v~  271 (517)
                      .++....|+....+.+..+..  +...+.+++|+|||+++ ++++.++.|.+||+.+++.   ...+..+.     ..+.
T Consensus         9 ~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~---~~~~~~~~~~~~~~~~~   85 (337)
T d1pbyb_           9 RPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET---LGRIDLSTPEERVKSLF   85 (337)
T ss_dssp             TTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE---EEEEECCBTTEEEECTT
T ss_pred             CCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcE---EEEEecCCCccccccee
Confidence            345566677777788888764  45678899999999987 5667899999999987643   34444333     2345


Q ss_pred             EEEECCCCCeEEEEe------------CCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEe
Q 042434          272 FVAWSPDDTKLLTCG------------NAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCD  339 (517)
Q Consensus       272 ~l~~s~~~~~l~s~~------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~  339 (517)
                      .++|+|+++++++++            .++.+.+||..+++....+.. ...+.+++|+|+|+++++++.+    +..|+
T Consensus        86 ~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~----~~~~d  160 (337)
T d1pbyb_          86 GAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLGRD----LHVMD  160 (337)
T ss_dssp             CEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEESSS----EEEEE
T ss_pred             eEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-cCCceEEEEcCCCCEEEEEcCC----cceee
Confidence            789999999998875            357899999999998888854 4567889999999999998766    55677


Q ss_pred             CCCCeeEeeeCcCCCceEEEEEcc------------------------CCCEEEEEeCCCcEEEEECCCce---EEeecc
Q 042434          340 CDGNEIKAWRGTRIPKVLDLAVTP------------------------DGENLISVLSDKDIRILNLGTYA---ERVISE  392 (517)
Q Consensus       340 ~~~~~~~~~~~~~~~~i~~~~~~~------------------------~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~  392 (517)
                      .............. ......+.+                        +......+..++.+.+||..++.   .....+
T Consensus       161 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (337)
T d1pbyb_         161 PEAGTLVEDKPIQS-WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIM  239 (337)
T ss_dssp             TTTTEEEEEECSTT-TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEEC
T ss_pred             eecCcEEEEeecCC-ccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCC
Confidence            76544332211110 000011111                        11111222334568899988876   233456


Q ss_pred             CCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCc
Q 042434          393 EHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSK  472 (517)
Q Consensus       393 ~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  472 (517)
                      ...+..+.++|++.+++.+  ++.+++||+.+. ........ ...   +.++.++|||++|++++.||.|++||..+++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~-~~~~~~~~-~~~---~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~  312 (337)
T d1pbyb_         240 DVFYFSTAVNPAKTRAFGA--YNVLESFDLEKN-ASIKRVPL-PHS---YYSVNVSTDGSTVWLGGALGDLAAYDAETLE  312 (337)
T ss_dssp             SSCEEEEEECTTSSEEEEE--ESEEEEEETTTT-EEEEEEEC-SSC---CCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred             CcceEEEEecccceEEEEc--cccEEEEECCCC-cEEEEEcC-CCC---EEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence            6678889999999988766  588999999887 44444432 222   3456669999999999999999999999999


Q ss_pred             eeEEecC
Q 042434          473 PIEILSG  479 (517)
Q Consensus       473 ~~~~~~~  479 (517)
                      .+.+++.
T Consensus       313 ~v~~i~~  319 (337)
T d1pbyb_         313 KKGQVDL  319 (337)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEC
Confidence            9988864

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.82  E-value=6.5e-19  Score=165.05  Aligned_cols=280  Identities=10%  Similarity=0.037  Sum_probs=186.0

Q ss_pred             EEECCCCCEEEEee-----CCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEe----------CCCeEE
Q 042434          228 VQFSNNGEYLASSS-----SDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCG----------NAEVLK  292 (517)
Q Consensus       228 ~~~s~~~~~l~t~~-----~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~----------~dg~i~  292 (517)
                      .+.+|||+.++...     .++.|.+||..++   +.+.++..+..+  .++|+|||++|++++          .|+.|+
T Consensus         7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg---~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~   81 (355)
T d2bbkh_           7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAG---RVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVE   81 (355)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTT---EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred             EeeCCCCCEEEEEecccCCCcCeEEEEECCCC---cEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEE
Confidence            35689999887653     4567999999766   444555555444  799999999887653          478999


Q ss_pred             EEECCCCcEEEEeCCCC-------CceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeE-eeeCcCC------CceEE
Q 042434          293 LWDVETGICKHTFGDHG-------FIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIK-AWRGTRI------PKVLD  358 (517)
Q Consensus       293 iwd~~~~~~~~~~~~~~-------~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~-~~~~~~~------~~i~~  358 (517)
                      +||..+++.+..+..+.       .....++|+|+++++++++......+..|+..+.... .+.....      .....
T Consensus        82 v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (355)
T d2bbkh_          82 VFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTF  161 (355)
T ss_dssp             EECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEE
T ss_pred             EEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcce
Confidence            99999999887764322       2235689999999998887655555888888765543 3322221      11233


Q ss_pred             EEEccCCCEEEEE-eCCCcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccc-eEEeCcc
Q 042434          359 LAVTPDGENLISV-LSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKP-FKYTGHS  436 (517)
Q Consensus       359 ~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~  436 (517)
                      +.+++++..++.. ..++.+.+++.....   ..+...+....+.+++..++.++.++.+++|++....... .....+.
T Consensus       162 ~~~~~dg~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  238 (355)
T d2bbkh_         162 FMHCRDGSLAKVAFGTEGTPEITHTEVFH---PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALT  238 (355)
T ss_dssp             EEEETTSCEEEEECCSSSCCEEEECCCCS---CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSC
T ss_pred             EEEcCCCCEEEEEecCCCeEEEEeccccc---ceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcc
Confidence            5566666655443 233445555543322   1223345556788888999999999999999997652211 1111111


Q ss_pred             c----Cce---EEEeecCCCCCcEEEEecCC----------CcEEEEecCCCceeEEecCCCCCeeEEEecCCCCc-EEE
Q 042434          437 Q----NKY---VIRSCFGGLDGTFIASGSEN----------SQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPK-MLA  498 (517)
Q Consensus       437 ~----~~~---~i~~~~~s~~~~~l~~~~~d----------g~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~-~l~  498 (517)
                      .    ...   ....+.+++++..++....+          ..|.+||..+++.+..+. +...+.+++|+|||.. +++
T Consensus       239 ~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~v  317 (355)
T d2bbkh_         239 EAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYA  317 (355)
T ss_dssp             HHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-EEEEECEEEECCSSSCEEEE
T ss_pred             cceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec-CCCCEEEEEEcCCCCeEEEE
Confidence            0    000   01123347888887765543          369999999999988886 3456899999999943 567


Q ss_pred             EeeCCCcEEEeCCCCCCC
Q 042434          499 SASDDHTIRIWGPCQSSE  516 (517)
Q Consensus       499 s~~~dg~v~iw~~~~~~~  516 (517)
                      +++.|+.|++||..+++.
T Consensus       318 ~~~~d~~i~v~D~~tg~~  335 (355)
T d2bbkh_         318 LSTGDKTLYIHDAESGEE  335 (355)
T ss_dssp             EETTTTEEEEEETTTCCE
T ss_pred             EECCCCEEEEEECCCCCE
Confidence            778899999999999874

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=2.5e-17  Score=152.45  Aligned_cols=253  Identities=9%  Similarity=0.098  Sum_probs=169.5

Q ss_pred             ccccCcEEEEEECCCCCEEEEee-CCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeC-CCeEEEEEC
Q 042434          219 TEHKNEVWFVQFSNNGEYLASSS-SDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGN-AEVLKLWDV  296 (517)
Q Consensus       219 ~~h~~~v~~~~~s~~~~~l~t~~-~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-dg~i~iwd~  296 (517)
                      ..|.+.|.+++|||||++|++++ .|+.|++|++..............+...+..++|+|||++|++++. ++.+.+|+.
T Consensus        33 ~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~  112 (333)
T d1ri6a_          33 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRL  112 (333)
T ss_dssp             EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             EcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeecc
Confidence            36889999999999999996554 5899999999765433222233345566788999999999998875 668999988


Q ss_pred             CCCcEEEE--eCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCC--eeE----eeeCcCCCceEEEEEccCCCEE
Q 042434          297 ETGICKHT--FGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGN--EIK----AWRGTRIPKVLDLAVTPDGENL  368 (517)
Q Consensus       297 ~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~--~~~----~~~~~~~~~i~~~~~~~~~~~l  368 (517)
                      ........  ...+...+.++.++|+++++++++.++. .+..|+....  ...    ............++|++++..+
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~  191 (333)
T d1ri6a_         113 EDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQD-RICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYA  191 (333)
T ss_dssp             ETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGT-EEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEE
T ss_pred             ccccceecccccCCCccceEEEeeecceeeeccccccc-eeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeE
Confidence            77654433  3356677889999999999888876543 1556665432  211    1122233456889999999987


Q ss_pred             EEEe-CCCcEEEEECCCce--E----Ee------eccCCCeeEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCccceEEeC
Q 042434          369 ISVL-SDKDIRILNLGTYA--E----RV------ISEEHPITSLSVSVDCKNFIVNL-NSQEIHMWDVAGKWEKPFKYTG  434 (517)
Q Consensus       369 ~~~~-~dg~i~i~d~~~~~--~----~~------~~~~~~i~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~  434 (517)
                      +... ..+...+++.....  .    ..      .........++++++++++++.. .++.+.+|++...... .....
T Consensus       192 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  270 (333)
T d1ri6a_         192 YCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSV-LSKEG  270 (333)
T ss_dssp             EEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCC-EEEEE
T ss_pred             EeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCE-EEEEE
Confidence            6654 55677888765432  0    11      11233567789999999876654 5778999998655222 22222


Q ss_pred             cccCceEEEeecCCCCCcEEEEec-CCCcEEEE--ecCCCce
Q 042434          435 HSQNKYVIRSCFGGLDGTFIASGS-ENSQIYIW--NRRNSKP  473 (517)
Q Consensus       435 ~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iw--d~~~~~~  473 (517)
                      +.........+.++|||++|++++ .++.|.+|  |..+|++
T Consensus       271 ~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l  312 (333)
T d1ri6a_         271 FQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL  312 (333)
T ss_dssp             EEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred             EeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcE
Confidence            222111233456699999877665 56889998  5566654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.78  E-value=4.3e-18  Score=158.43  Aligned_cols=271  Identities=10%  Similarity=-0.013  Sum_probs=180.4

Q ss_pred             cccccCCCcccccCCCcccEEEec-cccCcEEEEEECCCCCEE-EEeeCCCcEEEEEecCCCeeeEEEEeccCC------
Q 042434          196 AISLYEDHCCGRDQIPTETVQILT-EHKNEVWFVQFSNNGEYL-ASSSSDCSAIIWKVLEDSKLTLKHTLRSHQ------  267 (517)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~v~~~~~s~~~~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~------  267 (517)
                      .+...++....+|....+.+.++. .|...+.+++|+|||+++ ++++.++.|.+||+.++..   ...+....      
T Consensus        12 ~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~---~~~~~~~~~~~~~~   88 (346)
T d1jmxb_          12 IVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN---TFHANLSSVPGEVG   88 (346)
T ss_dssp             EEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE---EEEEESCCSTTEEE
T ss_pred             EEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCee---eeeecccccccccC
Confidence            334445566677777788888886 466778999999999987 5556789999999976633   33332221      


Q ss_pred             CCEEEEEECCCCCeEEEEe------------CCCeEEEEECCCCcEEEEeCC--CCCceEEEEEeCCCCeEEEeeCCCce
Q 042434          268 NPVSFVAWSPDDTKLLTCG------------NAEVLKLWDVETGICKHTFGD--HGFIVSSCAWFPDSKRLVCGSSDTEK  333 (517)
Q Consensus       268 ~~v~~l~~s~~~~~l~s~~------------~dg~i~iwd~~~~~~~~~~~~--~~~~v~~i~~~~~~~~l~~~~~d~~v  333 (517)
                      ..+..++|+|||+++++++            .++.+.+|+..+++....+..  ....+..+.+++++..++++ .  . 
T Consensus        89 ~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~-  164 (346)
T d1jmxb_          89 RSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG-P--D-  164 (346)
T ss_dssp             ECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEES-S--S-
T ss_pred             CceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeC-C--c-
Confidence            2356789999999998765            467889999888765543322  23445566677777665543 2  2 


Q ss_pred             eEEEEeCCCCe-eEeeeCcCCCceEEEEEccCC--------------------------CEEEEEeCCCcEEEEECCCce
Q 042434          334 GIFMCDCDGNE-IKAWRGTRIPKVLDLAVTPDG--------------------------ENLISVLSDKDIRILNLGTYA  386 (517)
Q Consensus       334 ~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~--------------------------~~l~~~~~dg~i~i~d~~~~~  386 (517)
                       +..|+..... +..+..+.  ....+.++|++                          ..+.++..++.+.+||..+..
T Consensus       165 -~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (346)
T d1jmxb_         165 -IYKMDVKTGKYTVALPLRN--WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGK  241 (346)
T ss_dssp             -EEEECTTTCCEEEEECSTT--CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCC
T ss_pred             -ceEEEccCCCEEEEEecCC--CccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCc
Confidence             6667765433 33322211  12222233322                          233344455678889988776


Q ss_pred             ---EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcE
Q 042434          387 ---ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQI  463 (517)
Q Consensus       387 ---~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i  463 (517)
                         .....+...+..+.+++++.+++... ++.+.+||..+. .....+.. ...   +..+.++|||+++++++.||.|
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~-~~~~~~~~-~~~---~~~va~s~DG~~l~v~~~d~~v  315 (346)
T d1jmxb_         242 THTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQR-KLIKAANL-DHT---YYCVAFDKKGDKLYLGGTFNDL  315 (346)
T ss_dssp             EEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTT-EEEEEEEC-SSC---CCEEEECSSSSCEEEESBSSEE
T ss_pred             eEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCC-cEEEEEcC-CCC---EEEEEEcCCCCEEEEEeCCCcE
Confidence               23345666788899999988887665 467999999876 44443332 122   3455669999999999999999


Q ss_pred             EEEecCCCceeEEecCCCC
Q 042434          464 YIWNRRNSKPIEILSGHSM  482 (517)
Q Consensus       464 ~iwd~~~~~~~~~~~~h~~  482 (517)
                      ++||..+++.+.++..+.+
T Consensus       316 ~v~D~~t~~~i~~i~~p~g  334 (346)
T d1jmxb_         316 AVFNPDTLEKVKNIKLPGG  334 (346)
T ss_dssp             EEEETTTTEEEEEEECSSS
T ss_pred             EEEECccCCEEEEEECCCC
Confidence            9999999999999885543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.77  E-value=8.5e-17  Score=150.38  Aligned_cols=276  Identities=9%  Similarity=0.024  Sum_probs=182.2

Q ss_pred             cccccCCCcccEEEeccccCcEEEEEECCCCCEEEEe----------eCCCcEEEEEecCCCeeeEEEEeccCC----CC
Q 042434          204 CCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASS----------SSDCSAIIWKVLEDSKLTLKHTLRSHQ----NP  269 (517)
Q Consensus       204 ~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~----------~~dg~i~iw~~~~~~~~~~~~~~~~h~----~~  269 (517)
                      ...++.-..+.+.++..+..+  .++|||||++|+++          +.|+.|++||..++.....+.....+.    ..
T Consensus        30 v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~  107 (355)
T d2bbkh_          30 QFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTY  107 (355)
T ss_dssp             EEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCC
T ss_pred             EEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCC
Confidence            344566667777887766555  69999999988764          347899999998765433332212221    22


Q ss_pred             EEEEEECCCCCeEEEEe--CCCeEEEEECCCCcEEEEeCCCCC-------ceEEEEEeCCCCeEEEeeCCCceeEEEEeC
Q 042434          270 VSFVAWSPDDTKLLTCG--NAEVLKLWDVETGICKHTFGDHGF-------IVSSCAWFPDSKRLVCGSSDTEKGIFMCDC  340 (517)
Q Consensus       270 v~~l~~s~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~-------~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~  340 (517)
                      ...++|+|+++++++++  .+..+.+|+..+++.+..+..+..       ....+.+++++..++....+... +..++.
T Consensus       108 ~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~-~~~~~~  186 (355)
T d2bbkh_         108 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGT-PEITHT  186 (355)
T ss_dssp             GGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSC-CEEEEC
T ss_pred             CceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCe-EEEEec
Confidence            35689999999887764  466899999999998887754432       22335566666655543332211 222222


Q ss_pred             CCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceEEeec--------------cCCCeeEEEEcCCCC
Q 042434          341 DGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVIS--------------EEHPITSLSVSVDCK  406 (517)
Q Consensus       341 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--------------~~~~i~~~~~s~~~~  406 (517)
                      ...     .......+....+.+++..++.++.++.+++|++.........              .......+++++++.
T Consensus       187 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~  261 (355)
T d2bbkh_         187 EVF-----HPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALD  261 (355)
T ss_dssp             CCC-----SCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTT
T ss_pred             ccc-----cceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCC
Confidence            111     1112223555677888889999999999999999876522111              112345688999999


Q ss_pred             EEEEEeCC----------CeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCc--EEEEecCCCcEEEEecCCCcee
Q 042434          407 NFIVNLNS----------QEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGT--FIASGSENSQIYIWNRRNSKPI  474 (517)
Q Consensus       407 ~l~~~~~d----------~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~--~l~~~~~dg~i~iwd~~~~~~~  474 (517)
                      .+++...+          ..|.+||..+. .....+....    .+..+.++|||+  ++++++.|+.|++||.++++.+
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~v~v~d~~t~-~~~~~~~~~~----~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~  336 (355)
T d2bbkh_         262 RIYLLVDQRDEWRHKTASRFVVVLDAKTG-ERLAKFEMGH----EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEEL  336 (355)
T ss_dssp             EEEEEEEECCTTCTTSCEEEEEEEETTTC-CEEEEEEEEE----EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred             eEEEEeccCCceeecCCCCeEEEEeCCCC-cEEEEecCCC----CEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEE
Confidence            88876543          36999999876 4444443221    244566799997  4567788999999999999999


Q ss_pred             EEecCCCCCeeEEEecCC
Q 042434          475 EILSGHSMTVNCVSWNPK  492 (517)
Q Consensus       475 ~~~~~h~~~v~~v~~~~~  492 (517)
                      .++.++......+.+.++
T Consensus       337 ~~i~~~G~~p~~i~~~d~  354 (355)
T d2bbkh_         337 RSVNQLGHGPQVITTADM  354 (355)
T ss_dssp             EEECCCCSSCCEEECCCC
T ss_pred             EEEeCcCCCccEEEeCCC
Confidence            999877666666666554

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.74  E-value=3.7e-15  Score=140.09  Aligned_cols=270  Identities=8%  Similarity=-0.029  Sum_probs=181.2

Q ss_pred             cccCCCcccEEEeccccCcEEEEEECCCCCEEEEee----------CCCcEEEEEecCCCeeeEEEEeccCCCCE-----
Q 042434          206 GRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSS----------SDCSAIIWKVLEDSKLTLKHTLRSHQNPV-----  270 (517)
Q Consensus       206 ~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~----------~dg~i~iw~~~~~~~~~~~~~~~~h~~~v-----  270 (517)
                      .++....+.+..+.++..+  .++|||||++|++++          .++.|.+||..+++   ....+..+....     
T Consensus        51 v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~---~~~~~~~~~~~~~~~~~  125 (373)
T d2madh_          51 VLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFL---PIADIELPDAPRFDVGP  125 (373)
T ss_pred             EEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCc---EEEEEecCCcceeEecc
Confidence            4555667788888766654  799999999999875          35789999997664   334444444333     


Q ss_pred             --EEEEECCCCCeEEEEe--CCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeE-EEeeCCCceeEEEEeCCCCee
Q 042434          271 --SFVAWSPDDTKLLTCG--NAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRL-VCGSSDTEKGIFMCDCDGNEI  345 (517)
Q Consensus       271 --~~l~~s~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~~~~~d~~v~i~~~~~~~~~~  345 (517)
                        ..+.|+++++.++...  .++.+.+|+..+++.....    ....++.++|+++.+ ++.+.|+.  +..|+......
T Consensus       126 ~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~g~~~~v~~~~dg~--~~~~~~~~~~~  199 (373)
T d2madh_         126 YSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL----SSPTCYHIHPGAPSTFYLLCAQGG--LAKTDHAGGAA  199 (373)
T ss_pred             CCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEe----ccceeEEEecCCCcEEEEEcCCCe--EEEEEcCCcee
Confidence              4578889998776554  4568899998887765444    335678899998755 67788888  77777765444


Q ss_pred             EeeeC------cCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceEEee--------------ccCCCeeEEEEcCCC
Q 042434          346 KAWRG------TRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVI--------------SEEHPITSLSVSVDC  405 (517)
Q Consensus       346 ~~~~~------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--------------~~~~~i~~~~~s~~~  405 (517)
                      .....      ..........+.+++ .++..+.++.+.+|+..+......              ........+++++++
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  278 (373)
T d2madh_         200 GAGLVGAMLTAAQNLLTQPAQANKSG-RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSS  278 (373)
T ss_pred             eEEEeeeccccCccceeeeEEECCCc-eEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCC
Confidence            33221      111123344555555 445566788899999877541111              111233455666666


Q ss_pred             CEEE----------EEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCc--EEEEecCCCcEEEEecCCCce
Q 042434          406 KNFI----------VNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGT--FIASGSENSQIYIWNRRNSKP  473 (517)
Q Consensus       406 ~~l~----------~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~--~l~~~~~dg~i~iwd~~~~~~  473 (517)
                      ..++          ....++.+.+||..++ .....+.. ...   +..+.++|||+  ++++++.|+.|++||+.+++.
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~-~~~~~~~~-~~~---~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~  353 (373)
T d2madh_         279 DGIYLLTSEQSAWKLHAAAKEVTSVTGLVG-QTSSQISL-GHD---VDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQ  353 (373)
T ss_pred             CeEEEecCCCceEEeecCCCeEEEEECCCC-cEEEEecC-CCC---eeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCE
Confidence            5544          4455678999998776 43443332 222   44566799998  456889999999999999999


Q ss_pred             eEEecCCCCCeeEEEecCC
Q 042434          474 IEILSGHSMTVNCVSWNPK  492 (517)
Q Consensus       474 ~~~~~~h~~~v~~v~~~~~  492 (517)
                      +.++..+....+.+++.++
T Consensus       354 ~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         354 DQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             EEEECCCCCCCcEEEEecC
Confidence            9999988888888877653

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.64  E-value=1.7e-14  Score=140.19  Aligned_cols=304  Identities=12%  Similarity=0.007  Sum_probs=174.2

Q ss_pred             cccccCCCcccEEEe-----ccccCcEEEEEECCCCCEEEEeeC---------CCcEEEEEecCCCeeeEEEEeccCCCC
Q 042434          204 CCGRDQIPTETVQIL-----TEHKNEVWFVQFSNNGEYLASSSS---------DCSAIIWKVLEDSKLTLKHTLRSHQNP  269 (517)
Q Consensus       204 ~~~~~~~~~~~~~~l-----~~h~~~v~~~~~s~~~~~l~t~~~---------dg~i~iw~~~~~~~~~~~~~~~~h~~~  269 (517)
                      ...++....+....+     ..|...|.++.|||||++|+.++.         ++.+.|||+.++.    ...+..|...
T Consensus        38 ~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~----~~~l~~~~~~  113 (470)
T d2bgra1          38 ILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ----LITEERIPNN  113 (470)
T ss_dssp             EEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE----ECCSSCCCTT
T ss_pred             EEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCc----ccccccCCcc
Confidence            344454555554444     445688999999999999998753         5678999997652    2457788999


Q ss_pred             EEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCC------------------CCceEEEEEeCCCCeEEEeeCCC
Q 042434          270 VSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDH------------------GFIVSSCAWFPDSKRLVCGSSDT  331 (517)
Q Consensus       270 v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------------~~~v~~i~~~~~~~~l~~~~~d~  331 (517)
                      +..+.|||||+.+|.. .++.+.+|+..+++..+....+                  ......+.|+|||+.|++...|.
T Consensus       114 ~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~  192 (470)
T d2bgra1         114 TQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFND  192 (470)
T ss_dssp             EEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEEC
T ss_pred             ccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecC
Confidence            9999999999999985 5678999999988876644322                  12345678999999999987654


Q ss_pred             c-eeEEEE---------------------------------eCCCCeeEeee-----------CcCCCceEEEEEccCCC
Q 042434          332 E-KGIFMC---------------------------------DCDGNEIKAWR-----------GTRIPKVLDLAVTPDGE  366 (517)
Q Consensus       332 ~-v~i~~~---------------------------------~~~~~~~~~~~-----------~~~~~~i~~~~~~~~~~  366 (517)
                      . +..+.+                                 +..+.......           ......+..+.|.+++.
T Consensus       193 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~  272 (470)
T d2bgra1         193 TEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQER  272 (470)
T ss_dssp             TTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTE
T ss_pred             CcCceEEEEeeccCCCCCCeeeeeccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCc
Confidence            3 322222                                 11110000000           00111345677888877


Q ss_pred             EEEEEe-CCC-----cEEEEECCCceEEeec--------cC-----CCeeEEEEcCCC--CEEEEEeCCCeEEEEEcCCC
Q 042434          367 NLISVL-SDK-----DIRILNLGTYAERVIS--------EE-----HPITSLSVSVDC--KNFIVNLNSQEIHMWDVAGK  425 (517)
Q Consensus       367 ~l~~~~-~dg-----~i~i~d~~~~~~~~~~--------~~-----~~i~~~~~s~~~--~~l~~~~~d~~i~~~d~~~~  425 (517)
                      .++... ..+     .+..+|..++......        ..     .......+.+++  ..++.+..+|..++|.....
T Consensus       273 ~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~  352 (470)
T d2bgra1         273 ISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQID  352 (470)
T ss_dssp             EEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETT
T ss_pred             eeEEEeeccCCceEEEEEEecCCCCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEEEeccCcCceeEEEecc
Confidence            555432 222     2334455554421110        01     111223344443  34556667776555544332


Q ss_pred             CccceEEeCcccCceEEEeecCCCCCcEE-EEecCCC------cEEEEecCCCceeEEe----cCCCCCeeEEEecCCCC
Q 042434          426 WEKPFKYTGHSQNKYVIRSCFGGLDGTFI-ASGSENS------QIYIWNRRNSKPIEIL----SGHSMTVNCVSWNPKRP  494 (517)
Q Consensus       426 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~~dg------~i~iwd~~~~~~~~~~----~~h~~~v~~v~~~~~~~  494 (517)
                      ......+.........+  .  +++++.+ ++++.++      .|+-.++..+.....+    .+|...+.+++|||||.
T Consensus       353 g~~~~~lt~g~~~v~~~--~--~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~fSpdgk  428 (470)
T d2bgra1         353 KKDCTFITKGTWEVIGI--E--ALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAK  428 (470)
T ss_dssp             CSCCEESCCSSSCEEEE--E--EECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEEEECTTSS
T ss_pred             CCceeeeccCCeeEEEE--E--EECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEecccccCCCCCEEEEEECCCCC
Confidence            23333333222222222  2  2233333 3433322      2444455554444443    36788899999999995


Q ss_pred             cEEEEeeC--CCcEEEeCCCCCCC
Q 042434          495 KMLASASD--DHTIRIWGPCQSSE  516 (517)
Q Consensus       495 ~~l~s~~~--dg~v~iw~~~~~~~  516 (517)
                      .++.+++.  .-.+.+|+..+++.
T Consensus       429 y~~~~~s~~~~P~~~l~~~~~g~~  452 (470)
T d2bgra1         429 YYQLRCSGPGLPLYTLHSSVNDKG  452 (470)
T ss_dssp             EEEEEECSBSSCEEEEEETTTTEE
T ss_pred             EEEEEecCCCCCeEEEEECCCCCE
Confidence            44555554  44588898887764

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.63  E-value=2.1e-15  Score=141.65  Aligned_cols=282  Identities=5%  Similarity=-0.092  Sum_probs=172.6

Q ss_pred             ccCcEEEEEECCCCCEE--E-EeeCCCc--EEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEe---------
Q 042434          221 HKNEVWFVQFSNNGEYL--A-SSSSDCS--AIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCG---------  286 (517)
Q Consensus       221 h~~~v~~~~~s~~~~~l--~-t~~~dg~--i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~---------  286 (517)
                      +.++...++..++++..  + +...+|.  +.+||..++   +...+...+..+  .++|+|||+.|++.+         
T Consensus        18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~---~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g   92 (368)
T d1mdah_          18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCG---VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKG   92 (368)
T ss_dssp             CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTT---EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSS
T ss_pred             cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCC---cEEEEEeCCCCC--cceECCCCCEEEEEcccCcccccc
Confidence            34444555667777743  3 2344555  555576554   444555555554  589999999998754         


Q ss_pred             -CCCeEEEEECCCCcEEEEeCCCC-------CceEEEEEeCCCCeEEEeeC-CCceeEEEEeCCCCeeEee-eCcCCCce
Q 042434          287 -NAEVLKLWDVETGICKHTFGDHG-------FIVSSCAWFPDSKRLVCGSS-DTEKGIFMCDCDGNEIKAW-RGTRIPKV  356 (517)
Q Consensus       287 -~dg~i~iwd~~~~~~~~~~~~~~-------~~v~~i~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~-~~~~~~~i  356 (517)
                       .|+.|.+||..+++.+..+..+.       .....++|+|||++++++.. ++.  ++.||..+...... .......+
T Consensus        93 ~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~--v~~~d~~~~~~~~~~~~~~~~~~  170 (368)
T d1mdah_          93 KRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSA--AAGLSVPGASDDQLTKSASCFHI  170 (368)
T ss_dssp             SEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSC--EEEEEETTTEEEEEEECSSCCCC
T ss_pred             ccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCe--EEEEECCCCcEeEEeeccCcceE
Confidence             36789999999999888764332       22346899999999988764 577  88899886554333 22221111


Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEECCCceEE--------eeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcc
Q 042434          357 LDLAVTPDGENLISVLSDKDIRILNLGTYAER--------VISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEK  428 (517)
Q Consensus       357 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--------~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~  428 (517)
                          .......++..+.||.+.+++.......        ...+...+....+.+++..+..  ..+.+++++.......
T Consensus       171 ----~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~v~~~~~~~~~~~  244 (368)
T d1mdah_         171 ----HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWA--VASSILQGDIPAAGAT  244 (368)
T ss_dssp             ----EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEEC--BSSCCEEEECCSSCCE
T ss_pred             ----ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEe--cCCCEEEEeecCCceE
Confidence                1122345666777888888877654411        1122333455667777655443  3455566665433111


Q ss_pred             ceE-EeCccc----CceE---EEeecCCCCCcEEEEecCC---------CcEEEEecCCCceeEEecCCCCCeeEEEecC
Q 042434          429 PFK-YTGHSQ----NKYV---IRSCFGGLDGTFIASGSEN---------SQIYIWNRRNSKPIEILSGHSMTVNCVSWNP  491 (517)
Q Consensus       429 ~~~-~~~~~~----~~~~---i~~~~~s~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~  491 (517)
                      ... ......    ....   .....+++++..++....+         ..|.+||..+++.+..+. +...+.+++|+|
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~~a~sp  323 (368)
T d1mdah_         245 MKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQ  323 (368)
T ss_dssp             EECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE-EEEEECEEEECC
T ss_pred             EEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEec-CCCceeEEEECC
Confidence            100 000000    0000   0112336777766554322         359999999999988886 446789999999


Q ss_pred             CCCc-EEEEeeCCCcEEEeCCCCCCC
Q 042434          492 KRPK-MLASASDDHTIRIWGPCQSSE  516 (517)
Q Consensus       492 ~~~~-~l~s~~~dg~v~iw~~~~~~~  516 (517)
                      ||.. ++++++.|+.|++||..+++.
T Consensus       324 DG~~~ly~s~~~~~~v~v~D~~tgk~  349 (368)
T d1mdah_         324 DGASDNYANSAGTEVLDIYDAASDQD  349 (368)
T ss_dssp             SSSCEEEEEETTTTEEEEEESSSCEE
T ss_pred             CCCEEEEEEeCCCCeEEEEECCCCCE
Confidence            9843 467778899999999998874

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.58  E-value=9.7e-14  Score=129.26  Aligned_cols=262  Identities=14%  Similarity=0.028  Sum_probs=169.7

Q ss_pred             EEEeeCCCcEEEEEecCCCeeeEEEEec---------------------------cCCCCEEEEEECCCCCeEEEEe-CC
Q 042434          237 LASSSSDCSAIIWKVLEDSKLTLKHTLR---------------------------SHQNPVSFVAWSPDDTKLLTCG-NA  288 (517)
Q Consensus       237 l~t~~~dg~i~iw~~~~~~~~~~~~~~~---------------------------~h~~~v~~l~~s~~~~~l~s~~-~d  288 (517)
                      +++|+.+|.|+||++.+...+..+..+.                           .|........++|||++|++.. .+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            5678889999999997664443332221                           1233455556678999996664 57


Q ss_pred             CeEEEEECCCCcEEEEeC-CCCCceEEEEEeCCCCe--EEEeeCCCc---------------eeEEEEeCCCCeeE-eee
Q 042434          289 EVLKLWDVETGICKHTFG-DHGFIVSSCAWFPDSKR--LVCGSSDTE---------------KGIFMCDCDGNEIK-AWR  349 (517)
Q Consensus       289 g~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~--l~~~~~d~~---------------v~i~~~~~~~~~~~-~~~  349 (517)
                      ++|.++|+.++++...+. .+...+..++|+|+++.  ++..+.+..               ..+..+|..+..+. ...
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~  173 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI  173 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE
T ss_pred             CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEe
Confidence            799999999999887664 45778899999999984  444433321               01234565543332 222


Q ss_pred             CcCCCceEEEEEccCCCEEEEEeCC-----------------------------------------CcEEEEECCCce-E
Q 042434          350 GTRIPKVLDLAVTPDGENLISVLSD-----------------------------------------KDIRILNLGTYA-E  387 (517)
Q Consensus       350 ~~~~~~i~~~~~~~~~~~l~~~~~d-----------------------------------------g~i~i~d~~~~~-~  387 (517)
                      ..  +....+.++|+|+++++.+.+                                         +.+.+++..... .
T Consensus       174 v~--~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~  251 (441)
T d1qnia2         174 VD--GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFT  251 (441)
T ss_dssp             ES--SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSE
T ss_pred             cC--CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceE
Confidence            22  256789999999998877654                                         233333333332 3


Q ss_pred             EeeccCCCeeEEEEcCCCCEEEEE-eCCCeEEEEEcCCCC-------ccceEEeCcccCceEEEeecCCCCCcEEEEecC
Q 042434          388 RVISEEHPITSLSVSVDCKNFIVN-LNSQEIHMWDVAGKW-------EKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSE  459 (517)
Q Consensus       388 ~~~~~~~~i~~~~~s~~~~~l~~~-~~d~~i~~~d~~~~~-------~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  459 (517)
                      ..+........+.++|||++++++ ..++++.+||+.+..       .....+.++...........|+++|+.+.+..-
T Consensus       252 ~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~  331 (441)
T d1qnia2         252 RYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFI  331 (441)
T ss_dssp             EEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETT
T ss_pred             EEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccc
Confidence            344445557889999999987664 568999999985421       111112222221111222345889999999999


Q ss_pred             CCcEEEEecCC----------CceeEEe-----cCCCCCeeEEEecCCCCcEEEEee
Q 042434          460 NSQIYIWNRRN----------SKPIEIL-----SGHSMTVNCVSWNPKRPKMLASAS  501 (517)
Q Consensus       460 dg~i~iwd~~~----------~~~~~~~-----~~h~~~v~~v~~~~~~~~~l~s~~  501 (517)
                      |..|..|++..          ...+..+     .+|...+.+.+++|+| ++|++++
T Consensus       332 ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdG-k~l~s~~  387 (441)
T d1qnia2         332 DSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADG-KWLVVLS  387 (441)
T ss_dssp             TTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCC-CEEEEEE
T ss_pred             cceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCC-cEEEecC
Confidence            99999999741          1233333     4777788888999999 7999994

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.56  E-value=1.4e-13  Score=128.88  Aligned_cols=266  Identities=7%  Similarity=-0.057  Sum_probs=166.0

Q ss_pred             cccCCCcccEEEeccccCcEEEEEECCCCCEEEEee----------CCCcEEEEEecCCCeeeEEEEeccCC-------C
Q 042434          206 GRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSS----------SDCSAIIWKVLEDSKLTLKHTLRSHQ-------N  268 (517)
Q Consensus       206 ~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~----------~dg~i~iw~~~~~~~~~~~~~~~~h~-------~  268 (517)
                      .++....+.+.++.++...  .++|+|||++|++.+          .|+.|.+||..+....   ..+..+.       .
T Consensus        50 ~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~---~~i~~p~~~~~~~g~  124 (368)
T d1mdah_          50 VSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPI---ADIELPDAPRFSVGP  124 (368)
T ss_dssp             EEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEE---EEEEETTSCSCCBSC
T ss_pred             EEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEe---eeecCCccceecccC
Confidence            3455666777777777665  489999999988754          3678999999766433   3332222       1


Q ss_pred             CEEEEEECCCCCeEEEEe-CCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCC--CCee
Q 042434          269 PVSFVAWSPDDTKLLTCG-NAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD--GNEI  345 (517)
Q Consensus       269 ~v~~l~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~--~~~~  345 (517)
                      ....++|+|||++++++. .++.+.+||+.+++....+..+.....   +......++..+.||.  +..++..  +...
T Consensus       125 ~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~--~~~~~~~~~~~~~  199 (368)
T d1mdah_         125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI---HPGAAATHYLGSCPAS--LAASDLAAAPAAA  199 (368)
T ss_dssp             CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC---EEEETTEEECCCCTTS--CEEEECCSSCCCC
T ss_pred             CccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE---ccCCCceEEEEcCCCC--EEEEEecCCceee
Confidence            234689999999998776 578999999999998888765433221   1122345556666776  4444433  2211


Q ss_pred             Eee----eCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceEEeec--------------cCCCeeEEEEcCCCCE
Q 042434          346 KAW----RGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVIS--------------EEHPITSLSVSVDCKN  407 (517)
Q Consensus       346 ~~~----~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--------------~~~~i~~~~~s~~~~~  407 (517)
                      ...    .......+....+.+++..+..  ..+.+++++..........              .......+++++++..
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~  277 (368)
T d1mdah_         200 GIVGAQCTGAQNCSSQAAQANYPGMLVWA--VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDG  277 (368)
T ss_dssp             EECCCCSCTTSCBCSCCEEETTTTEEEEC--BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTE
T ss_pred             eeeecccccccccceeecccccCcEEEEe--cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCE
Confidence            111    1111223445667777655543  3455666666554411111              1112346888999888


Q ss_pred             EEEEeCC---------CeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCc--EEEEecCCCcEEEEecCCCceeEE
Q 042434          408 FIVNLNS---------QEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGT--FIASGSENSQIYIWNRRNSKPIEI  476 (517)
Q Consensus       408 l~~~~~d---------~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~--~l~~~~~dg~i~iwd~~~~~~~~~  476 (517)
                      +++...+         ..|.+||..++ +....+...    ..+..+.++|||+  .++++..|+.|++||..+++.+.+
T Consensus       278 ~~v~~~~~~~~~~~~~~~v~v~D~~t~-~~~~~~~~~----~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~  352 (368)
T d1mdah_         278 IMILTVEHSRSCLAAAENTSSVTASVG-QTSGPISNG----HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSS  352 (368)
T ss_dssp             EEEEEEECSSCTTSCEEEEEEEESSSC-CEEECCEEE----EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEE
T ss_pred             EEEEecCCCceeecCCceEEEEECCCC-cEeEEecCC----CceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEE
Confidence            7765432         35889999877 333333321    2345566799997  356777889999999999999999


Q ss_pred             ecCCCCCeeEEEe
Q 042434          477 LSGHSMTVNCVSW  489 (517)
Q Consensus       477 ~~~h~~~v~~v~~  489 (517)
                      +..... -+.|++
T Consensus       353 i~~g~~-P~~l~~  364 (368)
T d1mdah_         353 VELDKG-PESLSV  364 (368)
T ss_dssp             CCCCSC-CCEEEC
T ss_pred             EECCCC-CCEEEE
Confidence            875433 344444

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.48  E-value=2.3e-12  Score=124.79  Aligned_cols=142  Identities=14%  Similarity=0.121  Sum_probs=106.1

Q ss_pred             EEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEE--EeccCCCCEEEEEECCCCCeEEEEeC---------CCeEEEEE
Q 042434          227 FVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKH--TLRSHQNPVSFVAWSPDDTKLLTCGN---------AEVLKLWD  295 (517)
Q Consensus       227 ~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~--~~~~h~~~v~~l~~s~~~~~l~s~~~---------dg~i~iwd  295 (517)
                      .+.|.++++++..  .|+.+.+||..++.......  ++..|...|.++.|||||++|+.++.         ++.+.+||
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d   98 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD   98 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence            4678899988765  47889999998776532221  33445678999999999999998743         56889999


Q ss_pred             CCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcC------------------CCceE
Q 042434          296 VETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTR------------------IPKVL  357 (517)
Q Consensus       296 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~------------------~~~i~  357 (517)
                      +.+++. ..+..+...+..+.|+|||+.++.... +.  +++++..+..........                  .+...
T Consensus        99 ~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~~~-~~--l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~  174 (470)
T d2bgra1          99 LNKRQL-ITEERIPNNTQWVTWSPVGHKLAYVWN-ND--IYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYS  174 (470)
T ss_dssp             TTTTEE-CCSSCCCTTEEEEEECSSTTCEEEEET-TE--EEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSB
T ss_pred             CCCCcc-cccccCCccccccccccCcceeeEeec-cc--ceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCcc
Confidence            998874 567788889999999999999999654 44  888988765544332211                  12345


Q ss_pred             EEEEccCCCEEEEEeCC
Q 042434          358 DLAVTPDGENLISVLSD  374 (517)
Q Consensus       358 ~~~~~~~~~~l~~~~~d  374 (517)
                      .+.|+|||+.++....|
T Consensus       175 ~~~wSPDGk~ia~~~~d  191 (470)
T d2bgra1         175 ALWWSPNGTFLAYAQFN  191 (470)
T ss_dssp             CEEECTTSSEEEEEEEE
T ss_pred             ccEECCCCCccceeEec
Confidence            67899999999987654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.41  E-value=3.3e-10  Score=102.45  Aligned_cols=244  Identities=11%  Similarity=0.082  Sum_probs=162.7

Q ss_pred             CCEEEEEECCCCCeEEEEeC-------CCeEEEEECCCCcEEEEeCCC----CCceEEEEEeCCCCeEEEeeCCCceeEE
Q 042434          268 NPVSFVAWSPDDTKLLTCGN-------AEVLKLWDVETGICKHTFGDH----GFIVSSCAWFPDSKRLVCGSSDTEKGIF  336 (517)
Q Consensus       268 ~~v~~l~~s~~~~~l~s~~~-------dg~i~iwd~~~~~~~~~~~~~----~~~v~~i~~~~~~~~l~~~~~d~~v~i~  336 (517)
                      .....++|.|+|++.++...       +|+|..||..++.........    ......++|.++++.++++...+.  +.
T Consensus        18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~--i~   95 (314)
T d1pjxa_          18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLG--LL   95 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTE--EE
T ss_pred             CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCe--EE
Confidence            34567899999988776433       467999998888655433221    233578999999998888876655  78


Q ss_pred             EEeCCCCeeEeeeCcCC----CceEEEEEccCCCEEEEEeC---------------CCcEEEEECCCceEEeeccCCCee
Q 042434          337 MCDCDGNEIKAWRGTRI----PKVLDLAVTPDGENLISVLS---------------DKDIRILNLGTYAERVISEEHPIT  397 (517)
Q Consensus       337 ~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~~---------------dg~i~i~d~~~~~~~~~~~~~~i~  397 (517)
                      .++..+...........    .....+++.++|+..++-..               .|.|..++...............+
T Consensus        96 ~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~~~~~~pN  175 (314)
T d1pjxa_          96 VVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFPN  175 (314)
T ss_dssp             EEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEESSEE
T ss_pred             EEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCceeEeeCCcceee
Confidence            88888765544332221    23578999999988776432               234555555443333333334457


Q ss_pred             EEEEcCCCC-----EEEEEeCCCeEEEEEcCCCCccceE--EeCcc-cCceEEEeecCCCCCcEEEEecCCCcEEEEecC
Q 042434          398 SLSVSVDCK-----NFIVNLNSQEIHMWDVAGKWEKPFK--YTGHS-QNKYVIRSCFGGLDGTFIASGSENSQIYIWNRR  469 (517)
Q Consensus       398 ~~~~s~~~~-----~l~~~~~d~~i~~~d~~~~~~~~~~--~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~  469 (517)
                      .++|+|+++     .+++-+..+.|..||+.........  +.... .......-+++..+|++.++....+.|.+||..
T Consensus       176 Gi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~  255 (314)
T d1pjxa_         176 GIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPD  255 (314)
T ss_dssp             EEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             eeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCC
Confidence            889998765     4445567889999987543222111  11111 111123344457889988887788999999998


Q ss_pred             CCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434          470 NSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ  513 (517)
Q Consensus       470 ~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~  513 (517)
                      .++.+..+..+....++++|.|++..+++|.+.+|.|...++..
T Consensus       256 ~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         256 GGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             CBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            88888777766778899999999855788888889888877653

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.38  E-value=1.4e-09  Score=96.68  Aligned_cols=242  Identities=14%  Similarity=0.144  Sum_probs=170.9

Q ss_pred             CEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCC------CCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC
Q 042434          269 PVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDH------GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG  342 (517)
Q Consensus       269 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~  342 (517)
                      ....++++++++.+++-..+..|++||. +|+.+..+...      ......+++.++....+.....+...+..++..+
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~-~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g  102 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDK-EGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG  102 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECT-TSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeC-CCCEEEEecccCCCcccccccccccccccccccceeccCCccccccccccc
Confidence            4689999999998888777889999996 47777766321      2234566766665544444333333488888888


Q ss_pred             CeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceEEe---eccCCCeeEEEEcCCCCEEEEEeCCCeEEE
Q 042434          343 NEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERV---ISEEHPITSLSVSVDCKNFIVNLNSQEIHM  419 (517)
Q Consensus       343 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~  419 (517)
                      .....+..........+++.++|..+++....+.+.+++........   ..+......+++.++++.+++....+.|++
T Consensus       103 ~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~  182 (279)
T d1q7fa_         103 QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKV  182 (279)
T ss_dssp             CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEE
T ss_pred             cceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCceeecccccccccccceeeeccceeEEeeeccccceee
Confidence            88777766666678899999999988888888889999876654322   234456788999999998888888999999


Q ss_pred             EEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecC-CCcEEEEecCCCceeEEecC--CCCCeeEEEecCCCCcE
Q 042434          420 WDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSE-NSQIYIWNRRNSKPIEILSG--HSMTVNCVSWNPKRPKM  496 (517)
Q Consensus       420 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~--h~~~v~~v~~~~~~~~~  496 (517)
                      ||....  ....+.. .........+++.++|+++++-+. ++.|.+|+ .+|+.+.++..  .......|++.|+| .+
T Consensus       183 ~d~~G~--~~~~~g~-~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG-~l  257 (279)
T d1q7fa_         183 FNYEGQ--YLRQIGG-EGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDG-SV  257 (279)
T ss_dssp             EETTCC--EEEEESC-TTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTT-EE
T ss_pred             eecCCc--eeeeecc-cccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCCC-cE
Confidence            998653  3333321 111111333445889997777544 45799998 46888777643  23467899999999 55


Q ss_pred             EEEeeCCCcEEEeCCCCCCCC
Q 042434          497 LASASDDHTIRIWGPCQSSEV  517 (517)
Q Consensus       497 l~s~~~dg~v~iw~~~~~~~v  517 (517)
                      ++ ++.++.|++|+.....++
T Consensus       258 ~V-~~~n~~v~~fr~~~~~~~  277 (279)
T d1q7fa_         258 VL-ASKDYRLYIYRYVQLAPV  277 (279)
T ss_dssp             EE-EETTTEEEEEECSCCCCT
T ss_pred             EE-EeCCCeEEEEEeeeecCC
Confidence            54 567899999999876653

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.33  E-value=1.7e-09  Score=100.05  Aligned_cols=274  Identities=9%  Similarity=0.069  Sum_probs=159.0

Q ss_pred             EEEeeC--CCcEEEEEecCCC-eeeEEEE-eccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCC-cEEEEe-CCCCC
Q 042434          237 LASSSS--DCSAIIWKVLEDS-KLTLKHT-LRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETG-ICKHTF-GDHGF  310 (517)
Q Consensus       237 l~t~~~--dg~i~iw~~~~~~-~~~~~~~-~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~-~~~~~  310 (517)
                      |..|+.  .+.|.++.++... .+..... .......+..|+|+|+++.|+++.. +.+..|.+... ...... .....
T Consensus         5 l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~   83 (365)
T d1jofa_           5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGG   83 (365)
T ss_dssp             EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCS
T ss_pred             EEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCC
Confidence            555643  5567777665432 2333332 2234556778999999999988765 46777766532 222211 12233


Q ss_pred             ceEEEEEeCCCCeEE--Eee-CCCceeEEEEeC--CCCe---------------eEeeeCcCCCceEEEEEccCCCEEEE
Q 042434          311 IVSSCAWFPDSKRLV--CGS-SDTEKGIFMCDC--DGNE---------------IKAWRGTRIPKVLDLAVTPDGENLIS  370 (517)
Q Consensus       311 ~v~~i~~~~~~~~l~--~~~-~d~~v~i~~~~~--~~~~---------------~~~~~~~~~~~i~~~~~~~~~~~l~~  370 (517)
                      ....+.++++++.++  ++. ..+.  ++.+..  .+..               ...........+.++.|+|+|+++++
T Consensus        84 ~p~~v~~~~~~~~~~v~~a~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v  161 (365)
T d1jofa_          84 HPRANDADTNTRAIFLLAAKQPPYA--VYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYS  161 (365)
T ss_dssp             SGGGGCTTSCCEEEEEEECSSTTCC--EEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEE
T ss_pred             CcEEEEECCCCCEEEEEEecCCCCE--EEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEE
Confidence            455677888887433  222 2334  433322  1111               11111122235789999999998888


Q ss_pred             EeC-CCcEEEEECCCce-------EEeeccCCCeeEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCccce-EEeCc-----
Q 042434          371 VLS-DKDIRILNLGTYA-------ERVISEEHPITSLSVSVDCKNFIVNL-NSQEIHMWDVAGKWEKPF-KYTGH-----  435 (517)
Q Consensus       371 ~~~-dg~i~i~d~~~~~-------~~~~~~~~~i~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~~~~~~-~~~~~-----  435 (517)
                      ++. ...|.+|+.....       ............++|+|+++++++.. .++.|.+|++........ .....     
T Consensus       162 ~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~  241 (365)
T d1jofa_         162 ADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPP  241 (365)
T ss_dssp             EETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCT
T ss_pred             eeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccc
Confidence            765 4578888765322       11223456788999999999886665 478999999865422111 11000     


Q ss_pred             ---------ccCceEEEeecCCCCCcEEEEecC------CCcEEEEecCCCceeE------EecCCCCCeeEEEecC-CC
Q 042434          436 ---------SQNKYVIRSCFGGLDGTFIASGSE------NSQIYIWNRRNSKPIE------ILSGHSMTVNCVSWNP-KR  493 (517)
Q Consensus       436 ---------~~~~~~i~~~~~s~~~~~l~~~~~------dg~i~iwd~~~~~~~~------~~~~h~~~v~~v~~~~-~~  493 (517)
                               .........+.++|||++|+++..      .+.|..|++.....+.      ..........+++++| +|
T Consensus       242 ~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G  321 (365)
T d1jofa_         242 GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD  321 (365)
T ss_dssp             TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT
T ss_pred             cccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCC
Confidence                     011112334456999999988743      2347777765432221      1122334567899998 67


Q ss_pred             CcEEEEeeCCCcEEEeCCCC
Q 042434          494 PKMLASASDDHTIRIWGPCQ  513 (517)
Q Consensus       494 ~~~l~s~~~dg~v~iw~~~~  513 (517)
                      ..++++...++.|.+|+++.
T Consensus       322 ~~l~va~~~s~~v~v~~~~~  341 (365)
T d1jofa_         322 EWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             TEEEEECSSSCEEEEEEEET
T ss_pred             CEEEEEeCCCCeEEEEEEeC
Confidence            44566667889999998754

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=5.2e-09  Score=92.33  Aligned_cols=234  Identities=18%  Similarity=0.175  Sum_probs=146.9

Q ss_pred             cEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCC---eEEEEECCCCcEEEEeCCCCCceEEEEEeCCC
Q 042434          245 SAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAE---VLKLWDVETGICKHTFGDHGFIVSSCAWFPDS  321 (517)
Q Consensus       245 ~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~  321 (517)
                      .|.|-|.+.. ...   .+..+...+...+|||||+.||......   .+.+.+..++... .+..+........|+|+|
T Consensus        20 ~l~i~d~dG~-~~~---~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg   94 (269)
T d2hqsa1          20 ELRVSDYDGY-NQF---VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDG   94 (269)
T ss_dssp             EEEEEETTSC-SCE---EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTS
T ss_pred             EEEEEcCCCC-CcE---EEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCC
Confidence            4666666533 222   2233567789999999999999765433   5777777766654 344667788899999999


Q ss_pred             CeEEEeeCC-CceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEe-CCC--cEEEEECCCce-EEeeccCCCe
Q 042434          322 KRLVCGSSD-TEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVL-SDK--DIRILNLGTYA-ERVISEEHPI  396 (517)
Q Consensus       322 ~~l~~~~~d-~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg--~i~i~d~~~~~-~~~~~~~~~i  396 (517)
                      ..++..... +...+..+.............. .......+++++..++..+ .+|  .|...++.... ..........
T Consensus        95 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~  173 (269)
T d2hqsa1          95 SKLAFALSKTGSLNLYVMDLASGQIRQVTDGR-SNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQN  173 (269)
T ss_dssp             SEEEEEECTTSSCEEEEEETTTCCEEECCCCS-SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEE
T ss_pred             CeeeEeeecCCccceeecccccccceeeeecc-ccccccccccccccceecccccCCceEeeeecccccceeeecccccc
Confidence            988876643 3333444444433333322222 2344556777777555443 444  46666776665 4444555667


Q ss_pred             eEEEEcCCCCEEEEEeCCC---eEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecC---CCcEEEEecCC
Q 042434          397 TSLSVSVDCKNFIVNLNSQ---EIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSE---NSQIYIWNRRN  470 (517)
Q Consensus       397 ~~~~~s~~~~~l~~~~~d~---~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~iwd~~~  470 (517)
                      ....|+|+++.++..+.++   .+.+++....  ... .........   ...|+|||+.|+..+.   ...|+++++..
T Consensus       174 ~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~--~~~-~~~~~~~~~---~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg  247 (269)
T d2hqsa1         174 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATG--GVQ-VLSSTFLDE---TPSLAPNGTMVIYSSSQGMGSVLNLVSTDG  247 (269)
T ss_dssp             EEEEECTTSSEEEEEEECSSCEEEEEEETTTC--CEE-ECCCSSSCE---EEEECTTSSEEEEEEEETTEEEEEEEETTS
T ss_pred             cccccccccceeEEEeecCCceeeeEeecccc--cce-EeecCcccc---ceEECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence            7889999999988876654   3444454433  222 222222222   2346999999876554   34789999986


Q ss_pred             CceeEEecCCCCCeeEEEecC
Q 042434          471 SKPIEILSGHSMTVNCVSWNP  491 (517)
Q Consensus       471 ~~~~~~~~~h~~~v~~v~~~~  491 (517)
                      +.. ..+....+.+...+|+|
T Consensus       248 ~~~-~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         248 RFK-ARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             CCE-EECCCSSSEEEEEEECC
T ss_pred             CCE-EEEeCCCCcEEeEEeCC
Confidence            654 55666677888999998

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.30  E-value=6.2e-10  Score=97.91  Aligned_cols=237  Identities=11%  Similarity=0.016  Sum_probs=153.0

Q ss_pred             cCcEEEEEECCCCCEEEEe-eCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc
Q 042434          222 KNEVWFVQFSNNGEYLASS-SSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI  300 (517)
Q Consensus       222 ~~~v~~~~~s~~~~~l~t~-~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~  300 (517)
                      ......++++++|+..++. +..+.+..++....  ........+ ......++++++++.+++....+.+++++-.++.
T Consensus        13 ~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~--~~~~~~~~~-~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~   89 (260)
T d1rwia_          13 RLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGST--GTTVLPFNG-LYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQ   89 (260)
T ss_dssp             CCCEEEEEECTTCCEEEEECSSSCEEEEEC------CEEECCCCS-CCSCCCEEECTTCCEEEEETTTEEEEECTTCSCC
T ss_pred             cCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCc--eEEEeccCC-ccCceEEEEcCCCCEEEeeeeeceeeeeeeccce
Confidence            3456899999999966654 45567777665322  222222222 2345788999999888777777777777655555


Q ss_pred             EEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEE
Q 042434          301 CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRIL  380 (517)
Q Consensus       301 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  380 (517)
                      .+... .......++++.++++.+++-..+..  +..++..+................++++++++.+++...++.|..+
T Consensus        90 ~~~~~-~~~~~p~~iavd~~g~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~  166 (260)
T d1rwia_          90 TVLPF-DGLNYPEGLAVDTQGAVYVADRGNNR--VVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKL  166 (260)
T ss_dssp             EECCC-CSCCSEEEEEECTTCCEEEEEGGGTE--EEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEE
T ss_pred             eeeee-eeeeecccccccccceeEeecccccc--ccccccccceeeeeeecccCCcceeeecCCCCEeeecccccccccc
Confidence            44333 22355789999999987776655555  7777877665554443333466789999999988888888999999


Q ss_pred             ECCCceEEee--ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEec
Q 042434          381 NLGTYAERVI--SEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGS  458 (517)
Q Consensus       381 d~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  458 (517)
                      |.........  ........++++++|+.+++....+.|..++..+.........+.    .....++++++|+++++-.
T Consensus       167 d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~----~~P~~i~~d~~g~l~vad~  242 (260)
T d1rwia_         167 EAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGL----NTPLAVAVDSDRTVYVADR  242 (260)
T ss_dssp             CTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSC----CCEEEEEECTTCCEEEEEG
T ss_pred             ccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCC----CCeEEEEEeCCCCEEEEEC
Confidence            9876553332  344567889999999988888888889888875532211111111    1122344467777766656


Q ss_pred             CCCcEEEEec
Q 042434          459 ENSQIYIWNR  468 (517)
Q Consensus       459 ~dg~i~iwd~  468 (517)
                      .+++|+.++.
T Consensus       243 ~~~rI~~i~~  252 (260)
T d1rwia_         243 GNDRVVKLTS  252 (260)
T ss_dssp             GGTEEEEECC
T ss_pred             CCCEEEEEeC
Confidence            6666665543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.29  E-value=1.6e-11  Score=114.12  Aligned_cols=224  Identities=9%  Similarity=-0.038  Sum_probs=150.6

Q ss_pred             EEEEeCCCeEEEEECCCCcEEEEeCC------------------------------CCCceEEEEEeCCCCeEEEeeCCC
Q 042434          282 LLTCGNAEVLKLWDVETGICKHTFGD------------------------------HGFIVSSCAWFPDSKRLVCGSSDT  331 (517)
Q Consensus       282 l~s~~~dg~i~iwd~~~~~~~~~~~~------------------------------~~~~v~~i~~~~~~~~l~~~~~d~  331 (517)
                      ++|++.+|.|++|++.+++.++++..                              |.........+|||+++++.....
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            56778899999999999988877532                              222344455678999987776543


Q ss_pred             ceeEEEEeCCCCeeEe-eeCcCCCceEEEEEccCCC--EEEEEeCCC-----------------cEEEEECCCce-EEee
Q 042434          332 EKGIFMCDCDGNEIKA-WRGTRIPKVLDLAVTPDGE--NLISVLSDK-----------------DIRILNLGTYA-ERVI  390 (517)
Q Consensus       332 ~v~i~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~--~l~~~~~dg-----------------~i~i~d~~~~~-~~~~  390 (517)
                      . +|.++|+....... ........+..++|+|+|+  +++..+.+.                 .+..+|..+.. ....
T Consensus        94 ~-rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI  172 (441)
T d1qnia2          94 T-RVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQV  172 (441)
T ss_dssp             T-EEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEE
T ss_pred             C-EEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEE
Confidence            2 38899998765543 3334445789999999998  444444332                 23557877766 3334


Q ss_pred             ccCCCeeEEEEcCCCCEEEEEeCCC-eEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecC
Q 042434          391 SEEHPITSLSVSVDCKNFIVNLNSQ-EIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRR  469 (517)
Q Consensus       391 ~~~~~i~~~~~s~~~~~l~~~~~d~-~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~  469 (517)
                      ........+.++|+|+++++++.+. .+..++..+. ...........    -....+.++|+++..++ ++.+.+++..
T Consensus       173 ~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~-~~~d~i~v~n~----p~~~~~~~dGk~~~v~~-~~v~vvd~~~  246 (441)
T d1qnia2         173 IVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMR-NDRDWVVVFNV----ERIAAAVKAGNFKTIGD-SKVPVVDGRG  246 (441)
T ss_dssp             EESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTC-SSBCEEEEEEH----HHHHHHHHTTCCBCCTT-CCCCEEECSS
T ss_pred             ecCCCccceEECCCCCEEEEEecCCCceEEEeccCc-ceEEEEEeCCc----cceEEEecCCCEEEeCC-CCcEEEEccc
Confidence            4456688999999999998887653 3333343332 11111111110    01223368898877654 6788888888


Q ss_pred             CCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434          470 NSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ  513 (517)
Q Consensus       470 ~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~  513 (517)
                      ..+.+..++.+.. ...+.++|||..+++++..|++|.|||+.+
T Consensus       247 ~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k  289 (441)
T d1qnia2         247 ESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDK  289 (441)
T ss_dssp             SCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred             CCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeeh
Confidence            7788888876554 578999999976778889999999999864

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.28  E-value=5.9e-09  Score=91.99  Aligned_cols=210  Identities=18%  Similarity=0.218  Sum_probs=141.8

Q ss_pred             CCcccEEEeccccCcEEEEEECCCCCEEEEeeCC-C--cEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEe
Q 042434          210 IPTETVQILTEHKNEVWFVQFSNNGEYLASSSSD-C--SAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCG  286 (517)
Q Consensus       210 ~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d-g--~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~  286 (517)
                      ..+.....+..+...+...+|||||+.||..... +  .+.+.+...+.    ...+..+........|+|+|..++...
T Consensus        26 ~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~spdg~~i~~~~  101 (269)
T d2hqsa1          26 YDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAFAL  101 (269)
T ss_dssp             TTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC----EEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCc----eeEEeeeecccccceecCCCCeeeEee
Confidence            3455566666678889999999999999976543 2  34444544332    234455778889999999999888765


Q ss_pred             C-CC--eEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEE-eeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEc
Q 042434          287 N-AE--VLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVC-GSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVT  362 (517)
Q Consensus       287 ~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~  362 (517)
                      . ++  .+..+......... ............+++++..++. ...++...++..+..+.......... .......|+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~s  179 (269)
T d2hqsa1         102 SKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEG-SQNQDADVS  179 (269)
T ss_dssp             CTTSSCEEEEEETTTCCEEE-CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSS-SEEEEEEEC
T ss_pred             ecCCccceeeccccccccee-eeeccccccccccccccccceecccccCCceEeeeecccccceeeeccc-ccccccccc
Confidence            4 32  23333333333333 3344445556677777765544 45567777899988876655554443 467778999


Q ss_pred             cCCCEEEEEeCCC---cEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCC---CeEEEEEcCCC
Q 042434          363 PDGENLISVLSDK---DIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNS---QEIHMWDVAGK  425 (517)
Q Consensus       363 ~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---~~i~~~d~~~~  425 (517)
                      |+++.++..+.++   .+.+.|...................|+|||+.|+..+..   ..|+++++.+.
T Consensus       180 pdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~  248 (269)
T d2hqsa1         180 SDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR  248 (269)
T ss_dssp             TTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred             cccceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence            9999888776654   466667666666666667777889999999998866543   36888898765

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.27  E-value=2.3e-09  Score=94.15  Aligned_cols=236  Identities=10%  Similarity=0.029  Sum_probs=150.6

Q ss_pred             CCEEEEEECCCCCeEEEE-eCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeE
Q 042434          268 NPVSFVAWSPDDTKLLTC-GNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIK  346 (517)
Q Consensus       268 ~~v~~l~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~  346 (517)
                      .....++++++|+..++. +..+.+..++...................++++++++.+++....+.  +..+ ..+....
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~--i~~~-~~~~~~~   90 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRV--VTLA-AGSNNQT   90 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEE--EEEC-TTCSCCE
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeece--eeee-eecccee
Confidence            456899999999866654 45577777765443332222222344578899999987666554443  4333 3333333


Q ss_pred             eeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceEEee--ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 042434          347 AWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVI--SEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAG  424 (517)
Q Consensus       347 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~  424 (517)
                      ............+++.++++.+++-..+..+..++.........  ........++++++++.+++...++.|..+|...
T Consensus        91 ~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~  170 (260)
T d1rwia_          91 VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES  170 (260)
T ss_dssp             ECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred             eeeeeeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecccccccccccccc
Confidence            33333334678999999999888777777788888766552222  2334568899999999888888889999999876


Q ss_pred             CCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEec-CCCCCeeEEEecCCCCcEEEEeeCC
Q 042434          425 KWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILS-GHSMTVNCVSWNPKRPKMLASASDD  503 (517)
Q Consensus       425 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~l~s~~~d  503 (517)
                      ......... ....   ...+++.++|+++++....+.|..++..... ...+. ..-....+|+++++| .++++-..+
T Consensus       171 ~~~~~~~~~-~~~~---p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~-~~~~~~~~~~~P~~i~~d~~g-~l~vad~~~  244 (260)
T d1rwia_         171 NNQVVLPFT-DITA---PWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT-STVLPFTGLNTPLAVAVDSDR-TVYVADRGN  244 (260)
T ss_dssp             CCEEECCCS-SCCS---EEEEEECTTCCEEEEETTTTEEEEECTTCSC-CEECCCCSCCCEEEEEECTTC-CEEEEEGGG
T ss_pred             ceeeeeecc-ccCC---CccceeeeeeeeeeeecCCCEEEEEeCCCCe-EEEEccCCCCCeEEEEEeCCC-CEEEEECCC
Confidence            422221111 1111   2233447889988888888889888865443 22332 233567899999998 688877777


Q ss_pred             CcEEEeCCC
Q 042434          504 HTIRIWGPC  512 (517)
Q Consensus       504 g~v~iw~~~  512 (517)
                      +.|+..+..
T Consensus       245 ~rI~~i~~~  253 (260)
T d1rwia_         245 DRVVKLTSL  253 (260)
T ss_dssp             TEEEEECCC
T ss_pred             CEEEEEeCC
Confidence            777665543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.25  E-value=3e-08  Score=89.57  Aligned_cols=234  Identities=13%  Similarity=0.145  Sum_probs=156.4

Q ss_pred             CCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCC--CceeEEEEeCCCC
Q 042434          266 HQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSD--TEKGIFMCDCDGN  343 (517)
Q Consensus       266 h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d--~~v~i~~~~~~~~  343 (517)
                      ....+..++|.++|++.++-...+.|..|+..++.....+.........+++.++|+++++...+  ....+...+..+.
T Consensus        38 ~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~  117 (319)
T d2dg1a1          38 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD  117 (319)
T ss_dssp             SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred             CCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCc
Confidence            34456789999999977777788999999988877666655566678899999999888775432  3344777777765


Q ss_pred             eeEeeeCc--CCCceEEEEEccCCCEEEEEeC------CCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEE-eC
Q 042434          344 EIKAWRGT--RIPKVLDLAVTPDGENLISVLS------DKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVN-LN  413 (517)
Q Consensus       344 ~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~-~~  413 (517)
                      .+......  .......+.+.++|++.++...      .+.+..++..... ......-...+.++|+|+++.|+++ +.
T Consensus       118 ~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~  197 (319)
T d2dg1a1         118 NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETT  197 (319)
T ss_dssp             SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGG
T ss_pred             eeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEeccc
Confidence            55443322  2235788999999986665432      2346666665544 3333334456789999999876554 56


Q ss_pred             CCeEEEEEcCCCCccceEEeC----cccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEec------CCCCC
Q 042434          414 SQEIHMWDVAGKWEKPFKYTG----HSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILS------GHSMT  483 (517)
Q Consensus       414 d~~i~~~d~~~~~~~~~~~~~----~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~h~~~  483 (517)
                      .+.|..||+............    .........-+++..+|++.++....+.|.+||. .|+.+..+.      ++...
T Consensus       198 ~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~  276 (319)
T d2dg1a1         198 ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLR  276 (319)
T ss_dssp             GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCB
T ss_pred             CCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCce
Confidence            889999998654222221111    1111112333445789998888888999999995 688887775      33456


Q ss_pred             eeEEEecCCCCcEEEEe
Q 042434          484 VNCVSWNPKRPKMLASA  500 (517)
Q Consensus       484 v~~v~~~~~~~~~l~s~  500 (517)
                      +++++|.|++..++++.
T Consensus       277 ~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         277 STHPQFIPGTNQLIICS  293 (319)
T ss_dssp             CCEEEECTTSCEEEEEE
T ss_pred             eeeEEEeCCCCEEEEEc
Confidence            88999999874444444

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.24  E-value=3.3e-09  Score=95.41  Aligned_cols=239  Identities=10%  Similarity=0.022  Sum_probs=155.6

Q ss_pred             CCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCC
Q 042434          210 IPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAE  289 (517)
Q Consensus       210 ~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg  289 (517)
                      .|.+.+..+... ..+..++++|||+++++...+++|..|+..  ....   .+......+.+++|++||+++++...++
T Consensus        16 ~~~~v~~~~p~~-~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~--g~~~---~~~~~~~~~~gla~~~dG~l~v~~~~~~   89 (302)
T d2p4oa1          16 APAKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPD--GNQQ---IHATVEGKVSGLAFTSNGDLVATGWNAD   89 (302)
T ss_dssp             CCEEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTT--CCEE---EEEECSSEEEEEEECTTSCEEEEEECTT
T ss_pred             CcccEEEECCCC-CCcCCEEECCCCCEEEEeCCCCEEEEEeCC--CCEE---EEEcCCCCcceEEEcCCCCeEEEecCCc
Confidence            344555555432 258899999999999998889988777753  3322   3344567899999999999999888888


Q ss_pred             eEEEEECCCC--cEEEEe-CCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCc----------CCCce
Q 042434          290 VLKLWDVETG--ICKHTF-GDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGT----------RIPKV  356 (517)
Q Consensus       290 ~i~iwd~~~~--~~~~~~-~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~----------~~~~i  356 (517)
                      .+..|+....  ...... .........+++.++++++++.+.++.  ++.++..+.....+...          .....
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (302)
T d2p4oa1          90 SIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGA--IWLIDVVQPSGSIWLEHPMLARSNSESVFPAA  167 (302)
T ss_dssp             SCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTE--EEEEETTTTEEEEEEECGGGSCSSTTCCSCSE
T ss_pred             eEEEEEecccccceeeccccCCccccceeEEccCCCEEeecccccc--ceeeeccCCcceeEecCCccceeeccCccccc
Confidence            8888876443  222221 234566789999999988888777777  88888886654433211          11234


Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEECCCce----EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEE
Q 042434          357 LDLAVTPDGENLISVLSDKDIRILNLGTYA----ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKY  432 (517)
Q Consensus       357 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~  432 (517)
                      ..+.+.. +..+++.+..+.|..++.....    ............++++++|+.+++...++.|..++..+....  ..
T Consensus       168 ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~--~~  244 (302)
T d2p4oa1         168 NGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTI--IA  244 (302)
T ss_dssp             EEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEE--EE
T ss_pred             ccccccC-CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEE--EE
Confidence            5555543 3355566678889888876543    222234455678999999998888888999999987653111  12


Q ss_pred             eCcccCceEEEeecC---CCCCcEEEEecCC
Q 042434          433 TGHSQNKYVIRSCFG---GLDGTFIASGSEN  460 (517)
Q Consensus       433 ~~~~~~~~~i~~~~~---s~~~~~l~~~~~d  460 (517)
                      ..... ......+.|   ++|++.|+.++..
T Consensus       245 ~~~~~-~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         245 QAEQG-VIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             CGGGT-CTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             ecCCC-CCCceEEEEcCCCCCCCEEEEECCC
Confidence            11111 111334444   5677777665443

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.19  E-value=6.7e-08  Score=86.61  Aligned_cols=226  Identities=9%  Similarity=-0.024  Sum_probs=147.7

Q ss_pred             CEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeE-e
Q 042434          269 PVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIK-A  347 (517)
Q Consensus       269 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~-~  347 (517)
                      .+..++++|||+++++...+++|..|+.. ++. ..+......+.+++|.++|+++++...++.+..+..+....... .
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~~-~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~  106 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPD-GNQ-QIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL  106 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT-CCE-EEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCC-CCE-EEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeec
Confidence            58899999999999999999999888864 433 33445667899999999999988888888744444443333332 2


Q ss_pred             eeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceEEeec------------cCCCeeEEEEcCCCCEEEEEeCCC
Q 042434          348 WRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVIS------------EEHPITSLSVSVDCKNFIVNLNSQ  415 (517)
Q Consensus       348 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~------------~~~~i~~~~~s~~~~~l~~~~~d~  415 (517)
                      ...........+.+.++++++++.+.++.+..+|..........            .......+.++. +..+++.+..+
T Consensus       107 ~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~  185 (302)
T d2p4oa1         107 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKM  185 (302)
T ss_dssp             EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTT
T ss_pred             cccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCCCC
Confidence            23333446889999999999888888999999998876522111            111234555543 23455556788


Q ss_pred             eEEEEEcCCCCccceE-EeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCc-eeEEecCCCCCeeEEEe---c
Q 042434          416 EIHMWDVAGKWEKPFK-YTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSK-PIEILSGHSMTVNCVSW---N  490 (517)
Q Consensus       416 ~i~~~d~~~~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~v~~---~  490 (517)
                      .|..++.......... ......   ....+.++++|++.++...++.|..++..... .+......-...++++|   +
T Consensus       186 ~i~~~~~~~~~~~~~~~~~~~~~---~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~  262 (302)
T d2p4oa1         186 LLLRIPVDSTDKPGEPEIFVEQT---NIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTE  262 (302)
T ss_dssp             EEEEEEBCTTSCBCCCEEEEESC---CCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCST
T ss_pred             eEEeccccccccccccccccCCC---CCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCC
Confidence            8998888654222111 111111   12234558899988888889999999875332 23333334456899999   6


Q ss_pred             CCCCcEEEEee
Q 042434          491 PKRPKMLASAS  501 (517)
Q Consensus       491 ~~~~~~l~s~~  501 (517)
                      +|+ +.|+.++
T Consensus       263 ~D~-~~Lyvtt  272 (302)
T d2p4oa1         263 GDC-TAIYVVT  272 (302)
T ss_dssp             TTT-TEEEEEE
T ss_pred             CCC-CEEEEEC
Confidence            677 4444433

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.14  E-value=4.2e-08  Score=88.29  Aligned_cols=238  Identities=11%  Similarity=0.092  Sum_probs=149.6

Q ss_pred             EEEEEECCCCCEEEEeeC-------CCcEEEEEecCCCeeeEEEE--eccCCCCEEEEEECCCCCeEEEEeCCCeEEEEE
Q 042434          225 VWFVQFSNNGEYLASSSS-------DCSAIIWKVLEDSKLTLKHT--LRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWD  295 (517)
Q Consensus       225 v~~~~~s~~~~~l~t~~~-------dg~i~iw~~~~~~~~~~~~~--~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd  295 (517)
                      .-.++|.|+|++.++...       +|+|..||..++... ....  .....+.-..++|.++++.++++...+.+...+
T Consensus        20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~-~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~   98 (314)
T d1pjxa_          20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT-VICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQ   98 (314)
T ss_dssp             CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEE-EEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred             CeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEE-EEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEe
Confidence            456789999997776432       466777777654321 1111  111123467899999999888888777888899


Q ss_pred             CCCCcEEEEeCCCC----CceEEEEEeCCCCeEEEeeCC-------------CceeEEEEeCCCCeeEeeeCcCCCceEE
Q 042434          296 VETGICKHTFGDHG----FIVSSCAWFPDSKRLVCGSSD-------------TEKGIFMCDCDGNEIKAWRGTRIPKVLD  358 (517)
Q Consensus       296 ~~~~~~~~~~~~~~----~~v~~i~~~~~~~~l~~~~~d-------------~~v~i~~~~~~~~~~~~~~~~~~~~i~~  358 (517)
                      ...+..........    .....+++.++|+..++....             ..-++|.++..+..........  ..+.
T Consensus        99 ~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~~~~~--~pNG  176 (314)
T d1pjxa_          99 TDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQ--FPNG  176 (314)
T ss_dssp             TTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEES--SEEE
T ss_pred             CCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCceeEeeCCcc--eeee
Confidence            76554322111111    135678999999887774321             1124888887776544433222  4567


Q ss_pred             EEEccCCC-----EEEEEeCCCcEEEEECCCce----EE-eec----cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 042434          359 LAVTPDGE-----NLISVLSDKDIRILNLGTYA----ER-VIS----EEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAG  424 (517)
Q Consensus       359 ~~~~~~~~-----~l~~~~~dg~i~i~d~~~~~----~~-~~~----~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~  424 (517)
                      ++|+|++.     ..++-+..+.|..||+....    .. ...    .......+++..+|+.+++....+.|.+||..+
T Consensus       177 i~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~  256 (314)
T d1pjxa_         177 IAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDG  256 (314)
T ss_dssp             EEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTC
T ss_pred             eEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCC
Confidence            89998765     44455677889999875432    11 111    122356899999999888888899999999876


Q ss_pred             CCccceEEeCcccCceEEEeecCCCCCc-EEEEecCCCcEEEEecC
Q 042434          425 KWEKPFKYTGHSQNKYVIRSCFGGLDGT-FIASGSENSQIYIWNRR  469 (517)
Q Consensus       425 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iwd~~  469 (517)
                      + .....+......   .+.++|.++++ ++++.+.+|.|+.+++.
T Consensus       257 g-~~~~~i~~p~~~---~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         257 G-QPKMRIRCPFEK---PSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             B-SCSEEEECSSSC---EEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             C-EEEEEEECCCCC---EEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            5 333333332222   34555688886 55666777888888864

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.12  E-value=2.5e-08  Score=92.07  Aligned_cols=247  Identities=6%  Similarity=0.002  Sum_probs=144.0

Q ss_pred             ccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeE--EEEeC-CCeEEEEECC
Q 042434          221 HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKL--LTCGN-AEVLKLWDVE  297 (517)
Q Consensus       221 h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l--~s~~~-dg~i~iwd~~  297 (517)
                      ....+..++|+|++++|.+++. +.+..|.+............ ........++++++++.+  +++.. .+++..+.+.
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~-~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~  115 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASH-PIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFY  115 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEE-ECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred             CCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeee-cCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEcc
Confidence            4555667999999999988765 57888888655443322222 223445677888998743  33322 3455555432


Q ss_pred             C-C------------cE---EEE-eCCCCCceEEEEEeCCCCeEEEeeCC-CceeEEEEe--CCCCeeE--ee-eCcCCC
Q 042434          298 T-G------------IC---KHT-FGDHGFIVSSCAWFPDSKRLVCGSSD-TEKGIFMCD--CDGNEIK--AW-RGTRIP  354 (517)
Q Consensus       298 ~-~------------~~---~~~-~~~~~~~v~~i~~~~~~~~l~~~~~d-~~v~i~~~~--~~~~~~~--~~-~~~~~~  354 (517)
                      . +            ..   ... -......+.++.|+|||+++++++.. ..  |+.++  ..+....  .. ......
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~--v~~~~~~~~g~~~~~~~~~~~~~g~  193 (365)
T d1jofa_         116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANK--LWTHRKLASGEVELVGSVDAPDPGD  193 (365)
T ss_dssp             SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTE--EEEEEECTTSCEEEEEEEECSSTTC
T ss_pred             CCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCE--EEEEEccCCCceeeccceeecCCCC
Confidence            1 1            11   111 11223457899999999998887643 34  55554  3333221  11 122234


Q ss_pred             ceEEEEEccCCCEEEEEe-CCCcEEEEECCCce--EEe-------e------------ccCCCeeEEEEcCCCCEEEEEe
Q 042434          355 KVLDLAVTPDGENLISVL-SDKDIRILNLGTYA--ERV-------I------------SEEHPITSLSVSVDCKNFIVNL  412 (517)
Q Consensus       355 ~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~--~~~-------~------------~~~~~i~~~~~s~~~~~l~~~~  412 (517)
                      ....+.|+|+++++++.. .++.|.+|+.....  ...       .            ........+.++|+|++++++.
T Consensus       194 gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsn  273 (365)
T d1jofa_         194 HPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS  273 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred             ceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEc
Confidence            688999999999876555 57899999986653  100       0            0111355789999999998875


Q ss_pred             C------CCeEEEEEcCCCCccceEEe---CcccCceEEEeecCCC-CCcEEEEe-cCCCcEEEEecCCCc
Q 042434          413 N------SQEIHMWDVAGKWEKPFKYT---GHSQNKYVIRSCFGGL-DGTFIASG-SENSQIYIWNRRNSK  472 (517)
Q Consensus       413 ~------d~~i~~~d~~~~~~~~~~~~---~~~~~~~~i~~~~~s~-~~~~l~~~-~~dg~i~iwd~~~~~  472 (517)
                      .      .+.|..|++...........   ....... ...+.++| +|++|+++ ..++.|.+|++....
T Consensus       274 r~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~-p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         274 RANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGH-SNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             EESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTT-CCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             ccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCC-ccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence            3      22477777754322211111   0111111 12233366 78877666 567899999876543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.12  E-value=2.1e-07  Score=82.23  Aligned_cols=240  Identities=12%  Similarity=0.127  Sum_probs=160.2

Q ss_pred             CcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEecc------CCCCEEEEEECCCC-CeEEE-EeCCCeEEEE
Q 042434          223 NEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRS------HQNPVSFVAWSPDD-TKLLT-CGNAEVLKLW  294 (517)
Q Consensus       223 ~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~------h~~~v~~l~~s~~~-~~l~s-~~~dg~i~iw  294 (517)
                      .....++++++|+.+++-..+..|++||.+ +.   .+..+..      .......+++.++. ..+++ .+.++.|..+
T Consensus        23 ~~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~---~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~   98 (279)
T d1q7fa_          23 TEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GR---FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY   98 (279)
T ss_dssp             SCEEEEEECTTCCEEEEEGGGTEEEEECTT-SC---EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             CCccEEEEcCCCCEEEEECCCCEEEEEeCC-CC---EEEEecccCCCcccccccccccccccccccceeccCCccccccc
Confidence            346899999999988887778899999864 22   2223311      11234556655543 34443 3445678778


Q ss_pred             ECCCCcEEEEeC-CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeC-cCCCceEEEEEccCCCEEEEEe
Q 042434          295 DVETGICKHTFG-DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRG-TRIPKVLDLAVTPDGENLISVL  372 (517)
Q Consensus       295 d~~~~~~~~~~~-~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~  372 (517)
                      +. .+.....+. ........+++.+++..+++....+.  ++.++..+..+..+.. .+......+++.++++.+++..
T Consensus        99 ~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~--~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~  175 (279)
T d1q7fa_          99 NQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMR--VIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDN  175 (279)
T ss_dssp             CT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTE--EEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEG
T ss_pred             cc-cccceeecCCCcccccceeccccCCcEEEEeeccce--eeEeccCCceeecccccccccccceeeeccceeEEeeec
Confidence            75 566666664 33566788999999988887766665  8888988877766532 2345678899999999888888


Q ss_pred             CCCcEEEEECCCceEEeec---cCCCeeEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCccceEEeCcccCceEEEeecCC
Q 042434          373 SDKDIRILNLGTYAERVIS---EEHPITSLSVSVDCKNFIVNLN-SQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGG  448 (517)
Q Consensus       373 ~dg~i~i~d~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s  448 (517)
                      ..+.|.+||........+.   .......+++.++|+.+++-.. ++.|.+|+...  .....+........ ...+++.
T Consensus       176 ~~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G--~~~~~~~~~~~~~~-p~~vav~  252 (279)
T d1q7fa_         176 RAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG--QLISALESKVKHAQ-CFDVALM  252 (279)
T ss_dssp             GGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS--CEEEEEEESSCCSC-EEEEEEE
T ss_pred             cccceeeeecCCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCCC--CEEEEEeCCCCCCC-EeEEEEe
Confidence            8999999998765533333   2345789999999997776554 45799998654  33333322221111 2233447


Q ss_pred             CCCcEEEEecCCCcEEEEecCCCce
Q 042434          449 LDGTFIASGSENSQIYIWNRRNSKP  473 (517)
Q Consensus       449 ~~~~~l~~~~~dg~i~iwd~~~~~~  473 (517)
                      ++|.++++ +.++.|++|......+
T Consensus       253 ~dG~l~V~-~~n~~v~~fr~~~~~~  276 (279)
T d1q7fa_         253 DDGSVVLA-SKDYRLYIYRYVQLAP  276 (279)
T ss_dssp             TTTEEEEE-ETTTEEEEEECSCCCC
T ss_pred             CCCcEEEE-eCCCeEEEEEeeeecC
Confidence            89876554 5688999999876644

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=7e-09  Score=98.91  Aligned_cols=269  Identities=14%  Similarity=0.162  Sum_probs=155.4

Q ss_pred             EECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEe---------CCCeEEEEECCCC
Q 042434          229 QFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCG---------NAEVLKLWDVETG  299 (517)
Q Consensus       229 ~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~---------~dg~i~iwd~~~~  299 (517)
                      .|.+++.++.. ..+|.|.+||+.++.....+..-....-.+....||||+++++...         ..+.+.++|+.++
T Consensus        23 ~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~  101 (465)
T d1xfda1          23 KWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG  101 (465)
T ss_dssp             CBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred             EEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCC
Confidence            57788776654 4678899999987754322221112234677888999999987753         3578999999988


Q ss_pred             cEEEEeC--CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeE-eeeCcCCCc-----------------eEEE
Q 042434          300 ICKHTFG--DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIK-AWRGTRIPK-----------------VLDL  359 (517)
Q Consensus       300 ~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~-~~~~~~~~~-----------------i~~~  359 (517)
                      .......  .....+....|+|||+.+|..... .  +|..+..+.... .......+.                 -..+
T Consensus       102 ~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~-n--l~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~  178 (465)
T d1xfda1         102 DPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFEN-N--IYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAH  178 (465)
T ss_dssp             CCEECCCTTCCSCCCSBCCBCSSTTCEEEEETT-E--EEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEE
T ss_pred             ceeeccCccCCccccceeeeccCCceEEEEecc-e--EEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceE
Confidence            7654322  234455668899999999887654 3  888877654433 222222111                 2467


Q ss_pred             EEccCCCEEEEEeCC-C---------------------------------cEEEEECCCceEE--eec------cCCCee
Q 042434          360 AVTPDGENLISVLSD-K---------------------------------DIRILNLGTYAER--VIS------EEHPIT  397 (517)
Q Consensus       360 ~~~~~~~~l~~~~~d-g---------------------------------~i~i~d~~~~~~~--~~~------~~~~i~  397 (517)
                      .|||||+.|+....| .                                 .+.++|+.++...  ...      ...-+.
T Consensus       179 ~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~  258 (465)
T d1xfda1         179 WWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYIT  258 (465)
T ss_dssp             EECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEE
T ss_pred             EECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceee
Confidence            899999999876432 1                                 3556666544311  111      111357


Q ss_pred             EEEEcCCCCEEEEEeC-C---CeEEEEEcCCCCccceEEeCcccCce---EEEeecCCCCCcEEE---EecCCC--cEEE
Q 042434          398 SLSVSVDCKNFIVNLN-S---QEIHMWDVAGKWEKPFKYTGHSQNKY---VIRSCFGGLDGTFIA---SGSENS--QIYI  465 (517)
Q Consensus       398 ~~~~s~~~~~l~~~~~-d---~~i~~~d~~~~~~~~~~~~~~~~~~~---~i~~~~~s~~~~~l~---~~~~dg--~i~i  465 (517)
                      .+.|+|+++.++.... +   ..+.++|..++. ....+..... .+   .-....+++||+.++   ..-.+|  .++.
T Consensus       259 ~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~-~~~~~~e~~~-~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~  336 (465)
T d1xfda1         259 MVKWATSTKVAVTWLNRAQNVSILTLCDATTGV-CTKKHEDESE-AWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYH  336 (465)
T ss_dssp             EEEESSSSEEEEEEEETTSCEEEEEEEETTTCC-EEEEEEEECS-SCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEE
T ss_pred             eeEEcCCCeEEEEEEccccccceEEEEcCCCCc-EEEEEEEcCC-ceEeccCCceeEccCCCeeEEEEeeeecccCceEE
Confidence            7899999886655433 2   257888887763 2222222111 11   011234478887432   222232  3444


Q ss_pred             EecC------CCceeEEecCCCCCeeEE-EecCCCCcEEEEeeCC
Q 042434          466 WNRR------NSKPIEILSGHSMTVNCV-SWNPKRPKMLASASDD  503 (517)
Q Consensus       466 wd~~------~~~~~~~~~~h~~~v~~v-~~~~~~~~~l~s~~~d  503 (517)
                      ..+.      .++.+..+....-.|..+ +|++++..+.+++..+
T Consensus       337 ~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~  381 (465)
T d1xfda1         337 ITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTED  381 (465)
T ss_dssp             EEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSS
T ss_pred             EEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCC
Confidence            4322      233444454344556665 6888875555666544

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=4.7e-08  Score=93.09  Aligned_cols=289  Identities=12%  Similarity=0.063  Sum_probs=160.3

Q ss_pred             CcEEEEEECCCCCEEEEee---------CCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEE
Q 042434          223 NEVWFVQFSNNGEYLASSS---------SDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKL  293 (517)
Q Consensus       223 ~~v~~~~~s~~~~~l~t~~---------~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i  293 (517)
                      -.+....|||||++++.+.         ..+.+.++|+.++.. ..+.........+....|||||+.||... ++.|.+
T Consensus        61 ~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~-~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~  138 (465)
T d1xfda1          61 LRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYY  138 (465)
T ss_dssp             TTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEE
T ss_pred             cccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCce-eeccCccCCccccceeeeccCCceEEEEe-cceEEE
Confidence            3567788999999988763         356788999976643 22222223345566789999999998865 568888


Q ss_pred             EECCCCcEEEEeCC-CCCc-----------------eEEEEEeCCCCeEEEeeCC-Cce---------------------
Q 042434          294 WDVETGICKHTFGD-HGFI-----------------VSSCAWFPDSKRLVCGSSD-TEK---------------------  333 (517)
Q Consensus       294 wd~~~~~~~~~~~~-~~~~-----------------v~~i~~~~~~~~l~~~~~d-~~v---------------------  333 (517)
                      .+..++..++.... ....                 -.++.|||||++|+....| ..+                     
T Consensus       139 ~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Y  218 (465)
T d1xfda1         139 CAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHY  218 (465)
T ss_dssp             ESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEEC
T ss_pred             EecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeec
Confidence            88877766554432 1211                 2467899999999986533 222                     


Q ss_pred             ----------eEEEEeCCCCeeEeeeC------cCCCceEEEEEccCCCEEEEEeC-C---CcEEEEECCCceEEee---
Q 042434          334 ----------GIFMCDCDGNEIKAWRG------TRIPKVLDLAVTPDGENLISVLS-D---KDIRILNLGTYAERVI---  390 (517)
Q Consensus       334 ----------~i~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~-d---g~i~i~d~~~~~~~~~---  390 (517)
                                ++++++..+........      .....+..+.|+++++.++.... +   ..+.++|..++.....   
T Consensus       219 p~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e  298 (465)
T d1xfda1         219 PKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHED  298 (465)
T ss_dssp             CBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEE
T ss_pred             cccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEE
Confidence                      23444443322211110      01113667899999886555432 2   2588899988872222   


Q ss_pred             ccCC----CeeEEEEcCCCCEEEE---EeCCC--eEEEEEcCC-----CCccceEEeCcccCceEE-EeecCCCCCcEE-
Q 042434          391 SEEH----PITSLSVSVDCKNFIV---NLNSQ--EIHMWDVAG-----KWEKPFKYTGHSQNKYVI-RSCFGGLDGTFI-  454 (517)
Q Consensus       391 ~~~~----~i~~~~~s~~~~~l~~---~~~d~--~i~~~d~~~-----~~~~~~~~~~~~~~~~~i-~~~~~s~~~~~l-  454 (517)
                      ....    .-....|+++|+.++.   ...+|  .++.+++..     .......+.   .+.+.+ ....++.+++.| 
T Consensus       299 ~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT---~G~w~V~~i~~~d~~~~~vy  375 (465)
T d1xfda1         299 ESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSIT---SGDWDVTKILAYDEKGNKIY  375 (465)
T ss_dssp             ECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSC---CSSSCEEEEEEEETTTTEEE
T ss_pred             cCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEec---cCCceEEEEEEEcCCCCEEE
Confidence            1111    1245678999985432   22333  344444321     111112222   112212 223345665554 


Q ss_pred             EEecCCC----cEEEEecCCCceeEEec---CCCCCeeEEEecCCCCcEEEEeeC--CCcEEEeCCCCCCC
Q 042434          455 ASGSENS----QIYIWNRRNSKPIEILS---GHSMTVNCVSWNPKRPKMLASASD--DHTIRIWGPCQSSE  516 (517)
Q Consensus       455 ~~~~~dg----~i~iwd~~~~~~~~~~~---~h~~~v~~v~~~~~~~~~l~s~~~--dg~v~iw~~~~~~~  516 (517)
                      +++..++    .++-.++..+.....+.   .......++.|||++..++.+++.  --.+.+++..+++.
T Consensus       376 F~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~  446 (465)
T d1xfda1         376 FLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKK  446 (465)
T ss_dssp             EEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCE
T ss_pred             EEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEeecCCCCeEEEEECCCCCE
Confidence            3444432    24444544433322222   244567799999999555545543  23567777666653

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.01  E-value=5.9e-07  Score=80.87  Aligned_cols=236  Identities=7%  Similarity=-0.001  Sum_probs=149.0

Q ss_pred             EeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeC----CCeEE
Q 042434          217 ILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGN----AEVLK  292 (517)
Q Consensus       217 ~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~----dg~i~  292 (517)
                      .+......+..++|.++|++.++-...+.|..|+...+.   ....+.........+++++||+++++...    .+.+.
T Consensus        34 ~~~~~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~---~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~  110 (319)
T d2dg1a1          34 EISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE---IKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIF  110 (319)
T ss_dssp             EEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCC---EEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEE
T ss_pred             EeccCCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCe---EEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEE
Confidence            333444556789999999977777778888888775442   22333445567899999999988776543    23455


Q ss_pred             EEECCCCcEEEEeCC--CCCceEEEEEeCCCCeEEEeeCC----CceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCC
Q 042434          293 LWDVETGICKHTFGD--HGFIVSSCAWFPDSKRLVCGSSD----TEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGE  366 (517)
Q Consensus       293 iwd~~~~~~~~~~~~--~~~~v~~i~~~~~~~~l~~~~~d----~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  366 (517)
                      ..+..++........  .......+++.++|++.++....    ..-.++.++..+..+......- .....++|+|+++
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~-~~pnGia~s~dg~  189 (319)
T d2dg1a1         111 AATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNI-SVANGIALSTDEK  189 (319)
T ss_dssp             EECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEE-SSEEEEEECTTSS
T ss_pred             EEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeecc-ceeeeeeeccccc
Confidence            556555554444322  23457789999999876664321    1223788888776655443222 2567899999998


Q ss_pred             EEEEE-eCCCcEEEEECCCce--E--------EeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCc
Q 042434          367 NLISV-LSDKDIRILNLGTYA--E--------RVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGH  435 (517)
Q Consensus       367 ~l~~~-~~dg~i~i~d~~~~~--~--------~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~  435 (517)
                      .|+.+ +..+.|..||+....  .        ...........+++.++|+..++....+.|.+||...  ..+..+...
T Consensus       190 ~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~G--~~l~~i~~P  267 (319)
T d2dg1a1         190 VLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRG--YPIGQILIP  267 (319)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTS--CEEEEEECT
T ss_pred             eEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCCC--cEEEEEeCC
Confidence            66544 567899999875421  0        1111223466899999999888888899999999754  333333211


Q ss_pred             c---cCceEEEeecCCCCCcEEEEec
Q 042434          436 S---QNKYVIRSCFGGLDGTFIASGS  458 (517)
Q Consensus       436 ~---~~~~~i~~~~~s~~~~~l~~~~  458 (517)
                      .   .......++.+.+++..+++.+
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         268 GRDEGHMLRSTHPQFIPGTNQLIICS  293 (319)
T ss_dssp             TGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred             CcCCCcCceeeeEEEeCCCCEEEEEc
Confidence            1   1111233445566666555544

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.93  E-value=1.8e-06  Score=76.48  Aligned_cols=225  Identities=13%  Similarity=0.121  Sum_probs=147.3

Q ss_pred             EEEEECCCCC-eEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeee
Q 042434          271 SFVAWSPDDT-KLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWR  349 (517)
Q Consensus       271 ~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~  349 (517)
                      -+..|++.+. +..+--..+.|..||..+++.. .+ .....+.++++.+++.++++ +.+|   ++.+|..+.....+.
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~-~~~~~~~~i~~~~dg~l~va-~~~g---l~~~d~~tg~~~~l~   94 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VH-ALPFMGSALAKISDSKQLIA-SDDG---LFLRDTATGVLTLHA   94 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EE-ECSSCEEEEEEEETTEEEEE-ETTE---EEEEETTTCCEEEEE
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EE-ECCCCcEEEEEecCCCEEEE-EeCc---cEEeecccceeeEEe
Confidence            3456776444 4444446788999999888653 33 33456789999988876665 4555   889998877665553


Q ss_pred             Cc----CCCceEEEEEccCCCEEEEEeC----CCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEE-eCCCeEEE
Q 042434          350 GT----RIPKVLDLAVTPDGENLISVLS----DKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVN-LNSQEIHM  419 (517)
Q Consensus       350 ~~----~~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~-~~d~~i~~  419 (517)
                      ..    ....+.++.+.|+|+..++...    .+.-.+|.+..+. ......-...+.++|+++++.++.+ +..+.|..
T Consensus        95 ~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~  174 (295)
T d2ghsa1          95 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMR  174 (295)
T ss_dssp             CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEE
T ss_pred             eeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeE
Confidence            32    1235788999999987666543    2344556555555 3333344456889999999876555 55788999


Q ss_pred             EEcCCCCc----cceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEec-CCCC
Q 042434          420 WDVAGKWE----KPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWN-PKRP  494 (517)
Q Consensus       420 ~d~~~~~~----~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~-~~~~  494 (517)
                      |++.....    ....+............++...+|++.++.-..|.|..||. .|+.+..+.-....+++++|- |+..
T Consensus       175 ~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~  253 (295)
T d2ghsa1         175 VPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDAS  253 (295)
T ss_dssp             EEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSC
T ss_pred             eeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCCCC
Confidence            98753211    11112111111222344445789988887777889999995 688888887666789999995 6765


Q ss_pred             cEEEEeeC
Q 042434          495 KMLASASD  502 (517)
Q Consensus       495 ~~l~s~~~  502 (517)
                      .+++|...
T Consensus       254 ~LyvTta~  261 (295)
T d2ghsa1         254 RLLVTSAR  261 (295)
T ss_dssp             EEEEEEBC
T ss_pred             EEEEEECC
Confidence            67776554

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.67  E-value=2.1e-06  Score=75.51  Aligned_cols=230  Identities=14%  Similarity=0.117  Sum_probs=127.4

Q ss_pred             EECCC--CCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeC-C-----CeEEEEECCCCc
Q 042434          229 QFSNN--GEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGN-A-----EVLKLWDVETGI  300 (517)
Q Consensus       229 ~~s~~--~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-d-----g~i~iwd~~~~~  300 (517)
                      ..||+  |+.+|..+ +|.|.+.|+..+..    ..+..+.+.+...+|||||+.||.... +     ..|.+++..+++
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~----~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~   79 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGST----RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE   79 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCE----EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCE----EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCc
Confidence            35788  99888765 46788888875532    345567788899999999999986542 2     247788887776


Q ss_pred             EEEEeCC------CCCceEEEEEeCCCCeEEEeeCCC----ceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCC-EEE
Q 042434          301 CKHTFGD------HGFIVSSCAWFPDSKRLVCGSSDT----EKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGE-NLI  369 (517)
Q Consensus       301 ~~~~~~~------~~~~v~~i~~~~~~~~l~~~~~d~----~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~  369 (517)
                      .......      .........|+|+|+.++......    ...++..+..+..........   ... .+.+++. .++
T Consensus        80 ~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~  155 (281)
T d1k32a2          80 IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGP---ATH-ILFADGRRVIG  155 (281)
T ss_dssp             EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCS---CSE-EEEETTEEEEE
T ss_pred             eEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecCCc---cce-eeecCCCeEEE
Confidence            6543211      123456788999999988764422    222555555555444333222   222 2333443 333


Q ss_pred             EEeCCC-----------cEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeC--CCeEEEEEcCCCCccceEEeCc
Q 042434          370 SVLSDK-----------DIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLN--SQEIHMWDVAGKWEKPFKYTGH  435 (517)
Q Consensus       370 ~~~~dg-----------~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~  435 (517)
                      ......           ........... ..............++++. .+.....  ...|.++|+.+..  ...+...
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~--~~~lt~~  232 (281)
T d1k32a2         156 RNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHR-IYFITDIDGFGQIYSTDLDGKD--LRKHTSF  232 (281)
T ss_dssp             ESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTE-EEEEECTTSSCEEEEEETTSCS--CEECCCC
T ss_pred             eeccccceeeeeccCCcceeeeeccccceeeccCCccccceeeeeccc-cceecccccccceEEEeCCCCc--eEEeecC
Confidence            322211           11111111111 2222233334444555542 2222222  3367888887652  2333222


Q ss_pred             ccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeE
Q 042434          436 SQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIE  475 (517)
Q Consensus       436 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  475 (517)
                      ... . .  ..++|||+.|+.. .+|.|+++|+.+++...
T Consensus       233 ~~~-~-~--~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~  267 (281)
T d1k32a2         233 TDY-Y-P--RHLNTDGRRILFS-KGGSIYIFNPDTEKIEK  267 (281)
T ss_dssp             CSS-C-E--EEEEESSSCEEEE-ETTEEEEECTTTCCEEE
T ss_pred             CCc-c-c--ccCcCCCCEEEEE-eCCEEEEEECCCCCEEE
Confidence            221 1 1  1248999988764 46889999998887543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.63  E-value=8.8e-06  Score=71.29  Aligned_cols=229  Identities=13%  Similarity=0.058  Sum_probs=124.2

Q ss_pred             EECCC--CCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeC-C---CceeEEEEeCCCCeeEe
Q 042434          274 AWSPD--DTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSS-D---TEKGIFMCDCDGNEIKA  347 (517)
Q Consensus       274 ~~s~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-d---~~v~i~~~~~~~~~~~~  347 (517)
                      ..+||  |+.++..+ +|.|.+.|+.+++.. .+..+...+...+|||||+.|+.... +   ....++.++..+.....
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            35688  98888764 457888899888765 45567778899999999999987543 2   22358888988877665


Q ss_pred             eeCcCC------CceEEEEEccCCCEEEEEeCC------CcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCC
Q 042434          348 WRGTRI------PKVLDLAVTPDGENLISVLSD------KDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQ  415 (517)
Q Consensus       348 ~~~~~~------~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~  415 (517)
                      +.....      .......|+|+|+.++.....      ..+...+........ ..........+.+.+..++......
T Consensus        83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  161 (281)
T d1k32a2          83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVP-LNLGPATHILFADGRRVIGRNTFEL  161 (281)
T ss_dssp             CCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE-CCSCSCSEEEEETTEEEEEESCSCC
T ss_pred             eeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEE-ecCCccceeeecCCCeEEEeecccc
Confidence            543221      134578899999988875432      234455554443222 2222233333333333333322211


Q ss_pred             -----------eEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecC--CCcEEEEecCCCceeEEecCCCC
Q 042434          416 -----------EIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSE--NSQIYIWNRRNSKPIEILSGHSM  482 (517)
Q Consensus       416 -----------~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~h~~  482 (517)
                                 .......... .... ...........   .++++. .+.....  ...|+++|+.+++... +..+. 
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~-lt~~~-  233 (281)
T d1k32a2         162 PHWKGYRGGTRGKIWIEVNSG-AFKK-IVDMSTHVSSP---VIVGHR-IYFITDIDGFGQIYSTDLDGKDLRK-HTSFT-  233 (281)
T ss_dssp             TTSTTCCSTTCCEEEEEEETT-EEEE-EECCSSCCEEE---EEETTE-EEEEECTTSSCEEEEEETTSCSCEE-CCCCC-
T ss_pred             ceeeeeccCCcceeeeecccc-ceee-ccCCcccccee---eeeccc-cceecccccccceEEEeCCCCceEE-eecCC-
Confidence                       0111111111 1111 11111111111   112332 2333322  3468888887665443 33222 


Q ss_pred             CeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434          483 TVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS  515 (517)
Q Consensus       483 ~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~  515 (517)
                      ......|+|||..+++  ..++.|+++|+.+++
T Consensus       234 ~~~~~~~SpDG~~I~f--~~~~~l~~~d~~~g~  264 (281)
T d1k32a2         234 DYYPRHLNTDGRRILF--SKGGSIYIFNPDTEK  264 (281)
T ss_dssp             SSCEEEEEESSSCEEE--EETTEEEEECTTTCC
T ss_pred             CcccccCcCCCCEEEE--EeCCEEEEEECCCCC
Confidence            2233468999954443  346789999998876

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.42  E-value=0.00017  Score=63.43  Aligned_cols=217  Identities=13%  Similarity=0.079  Sum_probs=134.3

Q ss_pred             EEEECC-CCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEe
Q 042434          227 FVQFSN-NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTF  305 (517)
Q Consensus       227 ~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  305 (517)
                      ...|++ ++.+..+=-..+.|.-||..++..    ..+ .....+.++++.++|.++++ +.+ .+.++|..+++.....
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~----~~~-~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~   94 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRK----TVH-ALPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHA   94 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEE----EEE-ECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEE
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeE----EEE-ECCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEe
Confidence            456777 444444444567888898865521    112 23567889999999877765 444 5889999998765443


Q ss_pred             CC----CCCceEEEEEeCCCCeEEEeeCC----CceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEE-eCCCc
Q 042434          306 GD----HGFIVSSCAWFPDSKRLVCGSSD----TEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISV-LSDKD  376 (517)
Q Consensus       306 ~~----~~~~v~~i~~~~~~~~l~~~~~d----~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~  376 (517)
                      ..    ....+..+.+.|+|++.++....    +.-.++..+  ...+...... ......++|+++++.++.+ +..+.
T Consensus        95 ~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~--~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~  171 (295)
T d2ghsa1          95 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNR  171 (295)
T ss_dssp             CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCE
T ss_pred             eeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeec--CCcEEEEeec-cCCcceeeecCCCceEEEeecccce
Confidence            21    23467889999999877765432    221244333  2333332222 1256789999999866544 55778


Q ss_pred             EEEEECCCce-------EEe---eccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeec
Q 042434          377 IRILNLGTYA-------ERV---ISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCF  446 (517)
Q Consensus       377 i~i~d~~~~~-------~~~---~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~  446 (517)
                      |..|++....       ...   .........+++..+|+..++....+.|..||..+.  ....+.-...  ....+++
T Consensus       172 I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G~--~~~~i~lP~~--~~T~~~F  247 (295)
T d2ghsa1         172 LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGN--HIARYEVPGK--QTTCPAF  247 (295)
T ss_dssp             EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCC--EEEEEECSCS--BEEEEEE
T ss_pred             eeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCCCc--EeeEecCCCC--ceEEEEE
Confidence            9999874321       111   123445788999999998888878899999997553  4444433222  2344455


Q ss_pred             CCCCCcEEEEe
Q 042434          447 GGLDGTFIASG  457 (517)
Q Consensus       447 ~s~~~~~l~~~  457 (517)
                      ..+|.+.|+..
T Consensus       248 GG~d~~~LyvT  258 (295)
T d2ghsa1         248 IGPDASRLLVT  258 (295)
T ss_dssp             ESTTSCEEEEE
T ss_pred             eCCCCCEEEEE
Confidence            56776655543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=98.30  E-value=0.00014  Score=66.75  Aligned_cols=275  Identities=12%  Similarity=0.001  Sum_probs=145.6

Q ss_pred             EEEEECCCCCEEEEeeCCC-----------cEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCC-CeEEE
Q 042434          226 WFVQFSNNGEYLASSSSDC-----------SAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNA-EVLKL  293 (517)
Q Consensus       226 ~~~~~s~~~~~l~t~~~dg-----------~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-g~i~i  293 (517)
                      .......+|+.++.|+.+.           .+.+||..++.-.........|.......++.+++.+++.|+.+ ..+.+
T Consensus        23 ~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~  102 (387)
T d1k3ia3          23 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  102 (387)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             EEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeE
Confidence            3444556888888887421           36789987654222222223344444567888999999988765 48999


Q ss_pred             EECCCCcEEEEeCCC-CCceEEEEEeCCCCeEEEeeCCCc----eeEEEEeCCCCeeEeeeCcCC--------------C
Q 042434          294 WDVETGICKHTFGDH-GFIVSSCAWFPDSKRLVCGSSDTE----KGIFMCDCDGNEIKAWRGTRI--------------P  354 (517)
Q Consensus       294 wd~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~~~~~d~~----v~i~~~~~~~~~~~~~~~~~~--------------~  354 (517)
                      ||..+......-... ...-.+.+..+||+.++.|+.+..    -.++.||.....-........              .
T Consensus       103 yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~  182 (387)
T d1k3ia3         103 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSD  182 (387)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTT
T ss_pred             ecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeecc
Confidence            999887654322111 222345667789999999875321    127888888765443321110              0


Q ss_pred             ceEEEEEccCCCEEEEEeCCCcEEEEECCCceEEeec---c-----CC--CeeEEEE-cCCCCEEEEEeCCC--------
Q 042434          355 KVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVIS---E-----EH--PITSLSV-SVDCKNFIVNLNSQ--------  415 (517)
Q Consensus       355 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~-----~~--~i~~~~~-s~~~~~l~~~~~d~--------  415 (517)
                      .-..+...++|+.++.+...+.+.++|..+.......   .     ..  .-.++.+ ..+++.++.++...        
T Consensus       183 ~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~  262 (387)
T d1k3ia3         183 NHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATT  262 (387)
T ss_dssp             CSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCC
T ss_pred             ceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccc
Confidence            1112334456777777777777888887765521110   0     00  1112222 33566666665321        


Q ss_pred             eEEEEEcCCCCccceEEeCc---ccCceEEEeecCCCCCcEEEEecCCC-----------cEEEEecCCCceeE--EecC
Q 042434          416 EIHMWDVAGKWEKPFKYTGH---SQNKYVIRSCFGGLDGTFIASGSENS-----------QIYIWNRRNSKPIE--ILSG  479 (517)
Q Consensus       416 ~i~~~d~~~~~~~~~~~~~~---~~~~~~i~~~~~s~~~~~l~~~~~dg-----------~i~iwd~~~~~~~~--~~~~  479 (517)
                      ...+.++.............   ......-..+ .-+||++++.|+.++           ++.+||..+.+-..  .+..
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~-~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~~~  341 (387)
T d1k3ia3         263 NAHIITLGEPGTSPNTVFASNGLYFARTFHTSV-VLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSI  341 (387)
T ss_dssp             CEEEEECCSTTSCCEEEECTTCCSSCCBSCEEE-ECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSS
T ss_pred             eeecccccccccCCCceeeccccccccccceee-eccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCCCC
Confidence            23333332211111111110   0111101111 147899999988531           47889987765322  2211


Q ss_pred             CCCCeeEEEecCCCCcEEEEeeC
Q 042434          480 HSMTVNCVSWNPKRPKMLASASD  502 (517)
Q Consensus       480 h~~~v~~v~~~~~~~~~l~s~~~  502 (517)
                      ....-......+|| ++++.|+.
T Consensus       342 ~R~~Hs~a~l~~dG-~v~v~GG~  363 (387)
T d1k3ia3         342 VRVYHSISLLLPDG-RVFNGGGG  363 (387)
T ss_dssp             CCCTTEEEEECTTS-CEEEEECC
T ss_pred             cccceEEEEECCCC-EEEEEeCC
Confidence            11111233457898 78888874

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.18  E-value=0.0014  Score=55.98  Aligned_cols=206  Identities=10%  Similarity=0.004  Sum_probs=135.0

Q ss_pred             EEeccccCcEEEEEECCCCCEEEEe-eCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEE-EEeCCCeEEE
Q 042434          216 QILTEHKNEVWFVQFSNNGEYLASS-SSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLL-TCGNAEVLKL  293 (517)
Q Consensus       216 ~~l~~h~~~v~~~~~s~~~~~l~t~-~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~~~dg~i~i  293 (517)
                      ..+..+...+..++|.+..+.|.-. ..++.|+..++......   ..+......+.++++..-+..|. +-...+.|.+
T Consensus        29 ~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~---~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~  105 (263)
T d1npea_          29 AFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT---TIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEV  105 (263)
T ss_dssp             EEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE---EEECTTCCCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             cccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcE---EEEEeccccccEEEEeccCCeEEEeccCCCEEEE
Confidence            3444556678899999877766655 45677888777644322   22333345688899976565665 4455679999


Q ss_pred             EECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCC-CceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEE-
Q 042434          294 WDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSD-TEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISV-  371 (517)
Q Consensus       294 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-  371 (517)
                      .++....+...+...-..+..++..|...+++..... +..+|+..++++.....+..........+++.+.++.|+.+ 
T Consensus       106 ~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d  185 (263)
T d1npea_         106 AKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVD  185 (263)
T ss_dssp             EETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEE
T ss_pred             EecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEe
Confidence            9987665444444444678899999987777655433 33458888888766555554444567899999888877665 


Q ss_pred             eCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 042434          372 LSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK  425 (517)
Q Consensus       372 ~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~  425 (517)
                      ...+.|...|+.... ............+++. ++..+.+-...+.|...|..++
T Consensus       186 ~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g  239 (263)
T d1npea_         186 AGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAIS  239 (263)
T ss_dssp             TTTTEEEEEETTEEEEEEEEECCCSEEEEEEE-TTEEEEEETTTTEEEEEETTTT
T ss_pred             CCCCEEEEEECCCCCeEEEECCCCCcEEEEEE-CCEEEEEECCCCEEEEEECCCC
Confidence            457789999998765 2233333344577775 3334445456778888888765

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.15  E-value=0.0024  Score=57.12  Aligned_cols=190  Identities=14%  Similarity=0.082  Sum_probs=117.3

Q ss_pred             CCCeEEEEe-CCCeEEEEECCCCcEEEEeC-CCCCceEEEEEeC--CCCeEEEeeCCCc----------------eeEEE
Q 042434          278 DDTKLLTCG-NAEVLKLWDVETGICKHTFG-DHGFIVSSCAWFP--DSKRLVCGSSDTE----------------KGIFM  337 (517)
Q Consensus       278 ~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~--~~~~l~~~~~d~~----------------v~i~~  337 (517)
                      ||+++++.. .++.|.+-|+.+.++.+... .....+..+...+  +..++++.+....                -.+..
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~  177 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  177 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEE
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEE
Confidence            788888775 47799999999999866543 3345566666654  4557777665321                12456


Q ss_pred             EeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCC--------------------------------------CcEEE
Q 042434          338 CDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSD--------------------------------------KDIRI  379 (517)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------------------------------------g~i~i  379 (517)
                      +|.....+..... -.+....+.++++|+++++.+.+                                      +.+.+
T Consensus       178 ID~~tm~V~~QV~-V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~V  256 (459)
T d1fwxa2         178 VDADKWEVAWQVL-VSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV  256 (459)
T ss_dssp             EETTTTEEEEEEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred             EecCCceEEEEee-eCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCcee
Confidence            6776544432211 11246678999999999887643                                      22344


Q ss_pred             EECCCce----EEeeccCCCeeEEEEcCCCCEEEEEeC-CCeEEEEEcCCCC-------ccceEEeCcc-cCceEEEeec
Q 042434          380 LNLGTYA----ERVISEEHPITSLSVSVDCKNFIVNLN-SQEIHMWDVAGKW-------EKPFKYTGHS-QNKYVIRSCF  446 (517)
Q Consensus       380 ~d~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~~-d~~i~~~d~~~~~-------~~~~~~~~~~-~~~~~i~~~~  446 (517)
                      .|.+...    ...+........+.++|||+++++++. +.++.++|++.-.       .......+.. .+-..+...+
T Consensus       257 VD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~f  336 (459)
T d1fwxa2         257 VDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAF  336 (459)
T ss_dssp             EECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEE
T ss_pred             ecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCcccccc
Confidence            5544321    223444455678899999999888776 8899999986310       1111111111 1222333333


Q ss_pred             CCCCCcEEEEecCCCcEEEEecC
Q 042434          447 GGLDGTFIASGSENSQIYIWNRR  469 (517)
Q Consensus       447 ~s~~~~~l~~~~~dg~i~iwd~~  469 (517)
                       +.+|.-..+---|..|.-|++.
T Consensus       337 -d~~g~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         337 -DGRGNAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             -CTTSEEEEEETTTTEEEEEEHH
T ss_pred             -CCCceEEEEeeccceEEEEecc
Confidence             6677666666789999999975

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.01  E-value=0.0033  Score=53.64  Aligned_cols=250  Identities=9%  Similarity=-0.009  Sum_probs=150.6

Q ss_pred             CCEEEEeeCCCcEEEEEecCCCe--eeEEEEeccCCCCEEEEEECCCCCeEEEE-eCCCeEEEEECCCCcEEEEeCCCCC
Q 042434          234 GEYLASSSSDCSAIIWKVLEDSK--LTLKHTLRSHQNPVSFVAWSPDDTKLLTC-GNAEVLKLWDVETGICKHTFGDHGF  310 (517)
Q Consensus       234 ~~~l~t~~~dg~i~iw~~~~~~~--~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~  310 (517)
                      |.+|+.+.. +.|+-.+++....  ......+..+...+..++|.+.++.|+-+ ..++.|...++..+.....+.....
T Consensus         1 ~~fLl~s~~-~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~   79 (263)
T d1npea_           1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLG   79 (263)
T ss_dssp             CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCC
T ss_pred             CCEEEEeCC-CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccc
Confidence            345555443 4666666643211  11112223334557889998877777655 4567898888876655555544445


Q ss_pred             ceEEEEEeCCCCeEEEeeC-CCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCC---CcEEEEECCCce
Q 042434          311 IVSSCAWFPDSKRLVCGSS-DTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSD---KDIRILNLGTYA  386 (517)
Q Consensus       311 ~v~~i~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~  386 (517)
                      .+.++++..-+..|+.+.. .+.  |...+.++.............+..+++.|...+++.....   +.|...++....
T Consensus        80 ~p~~iAvD~~~~~lY~~d~~~~~--I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~  157 (263)
T d1npea_          80 SPEGIALDHLGRTIFWTDSQLDR--IEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN  157 (263)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTE--EEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC
T ss_pred             cccEEEEeccCCeEEEeccCCCE--EEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCC
Confidence            6889999876666665544 445  8888888766555544444578899999988777655432   235555665544


Q ss_pred             -EEe-eccCCCeeEEEEcCCCCEEEEE-eCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcE
Q 042434          387 -ERV-ISEEHPITSLSVSVDCKNFIVN-LNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQI  463 (517)
Q Consensus       387 -~~~-~~~~~~i~~~~~s~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i  463 (517)
                       ... ...-.....+++.+.++.+..+ ...+.|...|+.+. .......+... ...+..   . ++.+..+-...+.|
T Consensus       158 ~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~-~~~~v~~~~~~-P~~lav---~-~~~lYwtd~~~~~I  231 (263)
T d1npea_         158 RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP-GRRKVLEGLQY-PFAVTS---Y-GKNLYYTDWKTNSV  231 (263)
T ss_dssp             CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE-EEEEEEECCCS-EEEEEE---E-TTEEEEEETTTTEE
T ss_pred             ceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCC-CeEEEECCCCC-cEEEEE---E-CCEEEEEECCCCEE
Confidence             222 2333467899999887777555 56788999998764 22222333222 122221   1 34444555567889


Q ss_pred             EEEecCCCceeEEecC-CCCCeeEEEecCC
Q 042434          464 YIWNRRNSKPIEILSG-HSMTVNCVSWNPK  492 (517)
Q Consensus       464 ~iwd~~~~~~~~~~~~-h~~~v~~v~~~~~  492 (517)
                      ...|..+++.+..+.. ......+++..++
T Consensus       232 ~~~~~~~g~~~~~~~~~~~~~~~gi~v~~~  261 (263)
T d1npea_         232 IAMDLAISKEMDTFHPHKQTRLYGITIALS  261 (263)
T ss_dssp             EEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred             EEEECCCCccceEECCCCCCCcceEEEeCC
Confidence            9999988887776642 2344556665543

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.00  E-value=0.0032  Score=53.23  Aligned_cols=250  Identities=8%  Similarity=0.107  Sum_probs=150.2

Q ss_pred             CcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCe
Q 042434          244 CSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKR  323 (517)
Q Consensus       244 g~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~  323 (517)
                      .+|.|-|+.++...  .+.-..-    -+.-.+|..+.||.-+ ..++.++|+++.+.++.+.-. .+|.-=.|-.+ +.
T Consensus        45 ~~VvIidl~n~~~~--~Rrpi~A----dsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~-e~VvfWkWis~-~~  115 (327)
T d1utca2          45 AQVVIIDMNDPSNP--IRRPISA----DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISL-NT  115 (327)
T ss_dssp             EEEEEEETTSTTSC--EEEECCC----SEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEESSS-SE
T ss_pred             ceEEEEECCCCCcc--eecccch----hhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcC-CCcEEEEecCC-CE
Confidence            46888888765432  1221112    2344578888887665 558999999999999887443 45655567644 45


Q ss_pred             EEEeeCCCceeEEEEeCCC--CeeEeeeCcC---CCceEEEEEccCCCEEEEEeC-------CCcEEEEECCCceE-Eee
Q 042434          324 LVCGSSDTEKGIFMCDCDG--NEIKAWRGTR---IPKVLDLAVTPDGENLISVLS-------DKDIRILNLGTYAE-RVI  390 (517)
Q Consensus       324 l~~~~~d~~v~i~~~~~~~--~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~-------dg~i~i~d~~~~~~-~~~  390 (517)
                      |+..+...   ||.|+.++  .+.+.+..+.   ...|..-..+++.++++..+-       .|.+.+|..+.... ...
T Consensus       116 L~lVT~ta---VYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ie  192 (327)
T d1utca2         116 VALVTDNA---VYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIE  192 (327)
T ss_dssp             EEEECSSE---EEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEEC
T ss_pred             EEEEcCCc---eEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCcccc
Confidence            55554443   99999964  4445544433   246888888999998765432       36788998887663 333


Q ss_pred             ccCCCeeEEEEcCC--C-CEEEEEe---CCCeEEEEEcCCCCc--cce-------EEeCcccCceEEEeecCCCCCcEEE
Q 042434          391 SEEHPITSLSVSVD--C-KNFIVNL---NSQEIHMWDVAGKWE--KPF-------KYTGHSQNKYVIRSCFGGLDGTFIA  455 (517)
Q Consensus       391 ~~~~~i~~~~~s~~--~-~~l~~~~---~d~~i~~~d~~~~~~--~~~-------~~~~~~~~~~~i~~~~~s~~~~~l~  455 (517)
                      +|......+.+.-+  . ..++.+.   ..+.+++.++.....  ...       .+.......+.+.... ++.-..++
T Consensus       193 Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqv-s~kygiiy  271 (327)
T d1utca2         193 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI-SEKHDVVF  271 (327)
T ss_dssp             CSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEE-ETTTTEEE
T ss_pred             ceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEe-eccCCEEE
Confidence            33222222222111  1 1222222   236889999855311  111       1112222344454433 56667888


Q ss_pred             EecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEE
Q 042434          456 SGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIR  507 (517)
Q Consensus       456 ~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~  507 (517)
                      .-+.-|.|++||+.++.++..-+-....|..-+-+.+. .=++....+|.|.
T Consensus       272 viTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~-~Gi~~VNr~GqVl  322 (327)
T d1utca2         272 LITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEAT-AGIIGVNRKGQVL  322 (327)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTT-TEEEEEETTSEEE
T ss_pred             EEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCC-ceEEEECCCCeEE
Confidence            88999999999999999988776666676655554443 2355566777664

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=0.0039  Score=53.28  Aligned_cols=205  Identities=12%  Similarity=-0.013  Sum_probs=126.7

Q ss_pred             cccCcEEEEEECCCCCEEEEee-CCCcEEEEEecCCCeeeE-EEEeccCCCCEEEEEECCCCCeEEEE-eCCCeEEEEEC
Q 042434          220 EHKNEVWFVQFSNNGEYLASSS-SDCSAIIWKVLEDSKLTL-KHTLRSHQNPVSFVAWSPDDTKLLTC-GNAEVLKLWDV  296 (517)
Q Consensus       220 ~h~~~v~~~~~s~~~~~l~t~~-~dg~i~iw~~~~~~~~~~-~~~~~~h~~~v~~l~~s~~~~~l~s~-~~dg~i~iwd~  296 (517)
                      .....+.+++|.+..+.|.-.. .++.|.-.++........ ...+......+..+++.+.+..|..+ ...+.|.+.++
T Consensus        27 ~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~  106 (266)
T d1ijqa1          27 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT  106 (266)
T ss_dssp             CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             CCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEec
Confidence            3455677999999777666554 455666555542211111 12222333456778887655555544 55678999999


Q ss_pred             CCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEE-eCCC
Q 042434          297 ETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISV-LSDK  375 (517)
Q Consensus       297 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg  375 (517)
                      ..................++..|...+++.......-+|+..++++.....+..........+++.+.++.|+.+ ...+
T Consensus       107 ~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~  186 (266)
T d1ijqa1         107 KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH  186 (266)
T ss_dssp             TSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             CCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcC
Confidence            776655555555667889999997766666554433458889998877666655444567899999988876666 4567


Q ss_pred             cEEEEECCCce-EEee-cc--CCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 042434          376 DIRILNLGTYA-ERVI-SE--EHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK  425 (517)
Q Consensus       376 ~i~i~d~~~~~-~~~~-~~--~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~  425 (517)
                      .|...|+.... .... ..  ......+++. .+..+.+-..++.|...+..++
T Consensus       187 ~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g  239 (266)
T d1ijqa1         187 SISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG  239 (266)
T ss_dssp             EEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred             EEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEEECCCC
Confidence            89999987654 2222 11  1234556665 2333334445677777776554

>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.97  E-value=2.3e-06  Score=55.52  Aligned_cols=57  Identities=19%  Similarity=0.380  Sum_probs=46.8

Q ss_pred             hHHHHHHHHHHHhhcChHHHHHHHhhhcCeeecChhHHHHHHHHHcCChHHHHHHhhc
Q 042434           16 KYEFVRVVVQCLYSLGYQKSASCLESESGVSYKSKGFERLEVQILNGDWDGCIDTLIA   73 (517)
Q Consensus        16 ~~~~~~li~q~L~~~g~~~s~~~l~~Esg~~~~~~~~~~~~~~i~~g~w~~~~~~l~~   73 (517)
                      ++|+.+-|++||..+||.+++.+|.+|+.++++.. ...-...+++.+|..++.+-++
T Consensus         7 ~eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~~~~~-~~~ky~glLEKKWtSViRLQkK   63 (76)
T d1uuja_           7 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEE-LDKKYAGLLEKKWTSVIRLQKK   63 (76)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHH-HHHHHTTHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCcHHHHHHHHHHHCCCCChh-hhhhhcCcchhHHHHHHHHHHH
Confidence            68999999999999999999999999999875543 3455566888999988766443

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.76  E-value=0.0076  Score=53.85  Aligned_cols=221  Identities=9%  Similarity=0.012  Sum_probs=133.0

Q ss_pred             CCCEEEEee-CCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECC--CCCeEEEEeCC------------------CeE
Q 042434          233 NGEYLASSS-SDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP--DDTKLLTCGNA------------------EVL  291 (517)
Q Consensus       233 ~~~~l~t~~-~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~--~~~~l~s~~~d------------------g~i  291 (517)
                      ||+||+... .+++|.+-|+.+-+..+. ..+ .....+..++..+  +..+++.++.+                  +.+
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kI-i~i-Pn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~  175 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAI-LEI-PNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  175 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEE-EEC-SSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEE
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEE-Eec-CCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEE
Confidence            889888776 578899999865533222 232 2345667777654  45677776653                  236


Q ss_pred             EEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCc---------------eeEE--------------------
Q 042434          292 KLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTE---------------KGIF--------------------  336 (517)
Q Consensus       292 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~---------------v~i~--------------------  336 (517)
                      .++|.++.+....+.. ......+.++++|+++++.+.+..               +.++                    
T Consensus       176 t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV  254 (459)
T d1fwxa2         176 TAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV  254 (459)
T ss_dssp             EEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred             EEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCc
Confidence            7889998887766642 234567899999999998775421               1111                    


Q ss_pred             -EEeCCC----CeeEeeeCcCCCceEEEEEccCCCEEEEEe-CCCcEEEEECCCce-------------EEeeccCCCee
Q 042434          337 -MCDCDG----NEIKAWRGTRIPKVLDLAVTPDGENLISVL-SDKDIRILNLGTYA-------------ERVISEEHPIT  397 (517)
Q Consensus       337 -~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~-------------~~~~~~~~~i~  397 (517)
                       +.|...    ..+..+....  ....+.++|||+++++++ .+.++.|+|++...             .......-...
T Consensus       255 ~VVD~~~~~~~~v~~yIPVpK--sPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPL  332 (459)
T d1fwxa2         255 KVVDGRKEASSLFTRYIPIAN--NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPL  332 (459)
T ss_dssp             EEEECSGG--CSSEEEEEEES--SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEE
T ss_pred             eeecccccCCcceeEEEecCC--CCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCcc
Confidence             122111    0111111111  345689999999887665 58899999996432             11122233456


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEEcCC---------CCccceEEeCcccCceEEEee--cCCCCCcEEEEec
Q 042434          398 SLSVSVDCKNFIVNLNSQEIHMWDVAG---------KWEKPFKYTGHSQNKYVIRSC--FGGLDGTFIASGS  458 (517)
Q Consensus       398 ~~~~s~~~~~l~~~~~d~~i~~~d~~~---------~~~~~~~~~~~~~~~~~i~~~--~~s~~~~~l~~~~  458 (517)
                      .-+|+..|.-..+-.-|..|.-|++..         ....+.++.-|-+........  ...|+|++|++..
T Consensus       333 ht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~n  404 (459)
T d1fwxa2         333 HTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS  404 (459)
T ss_dssp             EEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred             ccccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCEEEEec
Confidence            678888886666667899999999842         112233333332221111111  2368999999876

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.71  E-value=0.018  Score=52.97  Aligned_cols=244  Identities=10%  Similarity=0.029  Sum_probs=130.7

Q ss_pred             CEEEEEECCCCCeEEEE-eCCC----eEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCC------------
Q 042434          269 PVSFVAWSPDDTKLLTC-GNAE----VLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDT------------  331 (517)
Q Consensus       269 ~v~~l~~s~~~~~l~s~-~~dg----~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~------------  331 (517)
                      .+...++|||+++++.+ +.+|    .+++.|+.+|+.+...- .......++|.+|++.|+....+.            
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~  204 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST  204 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccc-ccccccceEEcCCCCEEEEEEeccccCccccccccc
Confidence            34556789999998854 3333    79999999998764221 111225688999999887654331            


Q ss_pred             --ceeEEEEeCCCCe---eEeeeCcC-CCceEEEEEccCCCEEEEEeC---CCc--EEEEECCCceE---------Eeec
Q 042434          332 --EKGIFMCDCDGNE---IKAWRGTR-IPKVLDLAVTPDGENLISVLS---DKD--IRILNLGTYAE---------RVIS  391 (517)
Q Consensus       332 --~v~i~~~~~~~~~---~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~---dg~--i~i~d~~~~~~---------~~~~  391 (517)
                        .-+++.+.+.+..   ...+.... ...+..+..++++++++....   ++.  +.+.|+.....         ....
T Consensus       205 ~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  284 (430)
T d1qfma1         205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID  284 (430)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC
T ss_pred             CCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeec
Confidence              1247777776432   22222222 224667788999998765433   223  44455443221         1111


Q ss_pred             cCCCeeEEEEcCCCCEEEEEeC---CCeEEEEEcCCCCcc-ceEEeCcccCceEEEeecCCCCCcEEE-EecCCC--cEE
Q 042434          392 EEHPITSLSVSVDCKNFIVNLN---SQEIHMWDVAGKWEK-PFKYTGHSQNKYVIRSCFGGLDGTFIA-SGSENS--QIY  464 (517)
Q Consensus       392 ~~~~i~~~~~s~~~~~l~~~~~---d~~i~~~d~~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~~dg--~i~  464 (517)
                      ..........+.++.+++....   ++.|...++...... -..+..+..........  ...+.+|+ ....++  .|+
T Consensus       285 ~~~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~--~~~~~~lvl~~~~~~~~~l~  362 (430)
T d1qfma1         285 NFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVA--CVRSNFLVLCYLHDVKNTLQ  362 (430)
T ss_dssp             SSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEE--EETTTEEEEEEEETTEEEEE
T ss_pred             ccccceEEEecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEE--EEECCEEEEEEEcCCEeEEE
Confidence            1111112222222223333322   356777776543221 12233222221222221  22334444 444554  688


Q ss_pred             EEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeC---CCcEEEeCCCCCC
Q 042434          465 IWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASD---DHTIRIWGPCQSS  515 (517)
Q Consensus       465 iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~---dg~v~iw~~~~~~  515 (517)
                      +++..++..........+.|..+...++...+.++.+.   =.++.-+|+.+++
T Consensus       363 v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~  416 (430)
T d1qfma1         363 LHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (430)
T ss_dssp             EEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence            99998887766655555667777666666445554432   3678888888764

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=0.016  Score=49.24  Aligned_cols=242  Identities=10%  Similarity=-0.002  Sum_probs=140.9

Q ss_pred             EEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEe-CCCeEEEEECCCCc----EEEEeCCCCC
Q 042434          236 YLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCG-NAEVLKLWDVETGI----CKHTFGDHGF  310 (517)
Q Consensus       236 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~iwd~~~~~----~~~~~~~~~~  310 (517)
                      +|+.+.. ..|+-.++.+....    .+......+.+++|.+.++.|.-.. .++.|.-.++....    ..........
T Consensus         3 fLl~s~~-~~I~~~~l~~~~~~----~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~   77 (266)
T d1ijqa1           3 YLFFTNR-HEVRKMTLDRSEYT----SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ   77 (266)
T ss_dssp             EEEEECB-SSEEEEETTSCCCE----EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCS
T ss_pred             EEEEECC-CeEEEEECCCCcce----eeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCC
Confidence            3444433 35887888654322    1223455678999998877776554 45667766664321    1222333345


Q ss_pred             ceEEEEEeCCCCeEEEeeC-CCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEe--CCCcEEEEECCCceE
Q 042434          311 IVSSCAWFPDSKRLVCGSS-DTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVL--SDKDIRILNLGTYAE  387 (517)
Q Consensus       311 ~v~~i~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~  387 (517)
                      .+.++++.+.+..|..+.. .+.  |...+.++................+++.|...++....  ..+.|...++.....
T Consensus        78 ~p~glAvD~~~~~lY~~d~~~~~--I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~  155 (266)
T d1ijqa1          78 APDGLAVDWIHSNIYWTDSVLGT--VSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI  155 (266)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTE--EEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE
T ss_pred             CcceEEEeeccceEEEEecCCCE--EEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCce
Confidence            5678888876666666544 344  88888887765554444445788999998766665543  345677777766542


Q ss_pred             -Eee-ccCCCeeEEEEcCCCCEEEEE-eCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEE
Q 042434          388 -RVI-SEEHPITSLSVSVDCKNFIVN-LNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIY  464 (517)
Q Consensus       388 -~~~-~~~~~i~~~~~s~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~  464 (517)
                       ... ........+++.+.++.++.+ ...+.|...++.+.. ................... . ++.+..+-..++.|+
T Consensus       156 ~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~-~~~~~~~~~~~~~p~~lav-~-~~~ly~td~~~~~I~  232 (266)
T d1ijqa1         156 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAV-F-EDKVFWTDIINEAIF  232 (266)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEE-E-TTEEEEEETTTTEEE
T ss_pred             ecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCC-EEEEEeCCCcccccEEEEE-E-CCEEEEEECCCCeEE
Confidence             222 333567899999987766665 557889999987652 2222222221111122111 1 344444445667888


Q ss_pred             EEecCCCceeEEecCCCCCeeEE
Q 042434          465 IWNRRNSKPIEILSGHSMTVNCV  487 (517)
Q Consensus       465 iwd~~~~~~~~~~~~h~~~v~~v  487 (517)
                      ..+..++.....+......+.++
T Consensus       233 ~~~~~~g~~~~~~~~~~~~p~~i  255 (266)
T d1ijqa1         233 SANRLTGSDVNLLAENLLSPEDM  255 (266)
T ss_dssp             EEETTTCCCCEEEECSCSCCCCE
T ss_pred             EEECCCCcceEEEEcCCCCceEE
Confidence            88877777666665443333333

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.43  E-value=0.037  Score=52.76  Aligned_cols=52  Identities=10%  Similarity=0.075  Sum_probs=36.3

Q ss_pred             CCcEEEEecCCCcEEEEecCCCceeEEecCCCC-CeeEEEecCCCCcEEEEee
Q 042434          450 DGTFIASGSENSQIYIWNRRNSKPIEILSGHSM-TVNCVSWNPKRPKMLASAS  501 (517)
Q Consensus       450 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~-~v~~v~~~~~~~~~l~s~~  501 (517)
                      .+.++++|+.||.++.+|.++|+.+-.+.-... .-.-+.|..+|..+++...
T Consensus       474 agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~v~~  526 (571)
T d2ad6a1         474 KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSMY  526 (571)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEEEEEe
Confidence            466788899999999999999999988763221 1122555567855665443

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.41  E-value=0.06  Score=51.51  Aligned_cols=50  Identities=10%  Similarity=0.058  Sum_probs=34.6

Q ss_pred             CCcEEEEecCCCcEEEEecCCCceeEEecCCCC-CeeEEEecCCCCcEEEE
Q 042434          450 DGTFIASGSENSQIYIWNRRNSKPIEILSGHSM-TVNCVSWNPKRPKMLAS  499 (517)
Q Consensus       450 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~-~v~~v~~~~~~~~~l~s  499 (517)
                      .|.+++.|+.||.++.+|.++|+.+..+....+ .-.-+.|..+|.++++.
T Consensus       483 agglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYvav  533 (596)
T d1w6sa_         483 AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAI  533 (596)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEEEEE
Confidence            467888899999999999999999988863221 11123444577555543

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.41  E-value=0.028  Score=53.62  Aligned_cols=52  Identities=12%  Similarity=0.211  Sum_probs=36.0

Q ss_pred             CCcEEEEecCCCcEEEEecCCCceeEEecCCCCCe-eEEEecCCCCcEEEEee
Q 042434          450 DGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTV-NCVSWNPKRPKMLASAS  501 (517)
Q Consensus       450 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v-~~v~~~~~~~~~l~s~~  501 (517)
                      .+.++++|+.||.++.+|..+|+.+-++....+.. .-+.+..+|..+++..+
T Consensus       468 agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~v~a  520 (560)
T d1kv9a2         468 AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA  520 (560)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEe
Confidence            46688889999999999999999998887432111 12455567755555443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.21  E-value=0.061  Score=48.25  Aligned_cols=156  Identities=12%  Similarity=0.082  Sum_probs=95.1

Q ss_pred             CEEEEEECCCCCeEEEEeCCC-----------eEEEEECCCCcEEE--Ee-CCCCCceEEEEEeCCCCeEEEeeCCCcee
Q 042434          269 PVSFVAWSPDDTKLLTCGNAE-----------VLKLWDVETGICKH--TF-GDHGFIVSSCAWFPDSKRLVCGSSDTEKG  334 (517)
Q Consensus       269 ~v~~l~~s~~~~~l~s~~~dg-----------~i~iwd~~~~~~~~--~~-~~~~~~v~~i~~~~~~~~l~~~~~d~~v~  334 (517)
                      ++.......+|+.++.|+.+.           .+.+||..+++...  .. ..+.......++.+++..++.|+.+.. .
T Consensus        21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~-~   99 (387)
T d1k3ia3          21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAK-K   99 (387)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTT-C
T ss_pred             ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCc-c
Confidence            444455566788888877431           37799998875322  11 233333456678899999998876642 2


Q ss_pred             EEEEeCCCCeeEeeeCcCC-CceEEEEEccCCCEEEEEeCC------CcEEEEECCCceEEeeccC--------------
Q 042434          335 IFMCDCDGNEIKAWRGTRI-PKVLDLAVTPDGENLISVLSD------KDIRILNLGTYAERVISEE--------------  393 (517)
Q Consensus       335 i~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~--------------  393 (517)
                      +.+||..+..-........ ..-...+..+||+.++.++.+      ..+.+||..+..-......              
T Consensus       100 ~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~  179 (387)
T d1k3ia3         100 TSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLY  179 (387)
T ss_dssp             EEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGG
T ss_pred             eeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCccccccccccccee
Confidence            7888887655544332221 123567778899999888753      3689999988762221110              


Q ss_pred             --CCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 042434          394 --HPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK  425 (517)
Q Consensus       394 --~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~  425 (517)
                        .....+...++++.+..+...+.+..++....
T Consensus       180 ~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~  213 (387)
T d1k3ia3         180 RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSG  213 (387)
T ss_dssp             TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTC
T ss_pred             eccceeEEEEeCCCCEEEecCcCCcEEecCcccC
Confidence              01112233456666777766777777776543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.20  E-value=0.08  Score=48.41  Aligned_cols=245  Identities=13%  Similarity=0.073  Sum_probs=127.6

Q ss_pred             cccCcEEEEEECCCCCEEEEe-eC----CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCC------
Q 042434          220 EHKNEVWFVQFSNNGEYLASS-SS----DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNA------  288 (517)
Q Consensus       220 ~h~~~v~~~~~s~~~~~l~t~-~~----dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d------  288 (517)
                      ++.-.+...++||+++++|.+ +.    -..+++.|+.++....  ..+..  .....++|++|++.|+-...+      
T Consensus       122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~--~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~  197 (430)
T d1qfma1         122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELP--DVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKS  197 (430)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEE--EEEEE--ECSCCEEECTTSSEEEEEECCCCSSCC
T ss_pred             cccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecc--ccccc--ccccceEEcCCCCEEEEEEeccccCcc
Confidence            344445567889999998854 22    3468999998775332  22221  112468899999988754332      


Q ss_pred             ----------CeEEEEECCCCc--EEEEeCCC--CCceEEEEEeCCCCeEEEeeC---CCceeEEEEeCCCCe-------
Q 042434          289 ----------EVLKLWDVETGI--CKHTFGDH--GFIVSSCAWFPDSKRLVCGSS---DTEKGIFMCDCDGNE-------  344 (517)
Q Consensus       289 ----------g~i~iwd~~~~~--~~~~~~~~--~~~v~~i~~~~~~~~l~~~~~---d~~v~i~~~~~~~~~-------  344 (517)
                                ..|..|.+.+..  ....+...  ...+..+..++++++++....   ++...++..+.....       
T Consensus       198 ~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~  277 (430)
T d1qfma1         198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL  277 (430)
T ss_dssp             SSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC
T ss_pred             cccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCccccccccc
Confidence                      257888887653  23344433  345667788999998775433   333446777654211       


Q ss_pred             -eEeeeCcCCCceEEEEEccCCCEEEEEe---CCCcEEEEECCCce----EEeec-cCCCeeEEEEcCCCCEEEEEe-CC
Q 042434          345 -IKAWRGTRIPKVLDLAVTPDGENLISVL---SDKDIRILNLGTYA----ERVIS-EEHPITSLSVSVDCKNFIVNL-NS  414 (517)
Q Consensus       345 -~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~----~~~~~-~~~~i~~~~~s~~~~~l~~~~-~d  414 (517)
                       ............. ...+.++.+++...   .++.|...++....    ...+. +...+..-.+...+.++++.. .+
T Consensus       278 ~~~~~~~~~~~~~~-~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~  356 (430)
T d1qfma1         278 KWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD  356 (430)
T ss_dssp             CCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEET
T ss_pred             ceeEeecccccceE-EEecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcC
Confidence             0111111111222 22222233333332   24567777776543    23333 333454444555556666664 44


Q ss_pred             C--eEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEe--cC--CCcEEEEecCCCce
Q 042434          415 Q--EIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASG--SE--NSQIYIWNRRNSKP  473 (517)
Q Consensus       415 ~--~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~--~~--dg~i~iwd~~~~~~  473 (517)
                      +  .|.+++..++.. .........   .+......++...+...  |.  =.+++-+|+.+++.
T Consensus       357 ~~~~l~v~~~~~~~~-~~~~~~~~~---sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~  417 (430)
T d1qfma1         357 VKNTLQLHDLATGAL-LKIFPLEVG---SVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL  417 (430)
T ss_dssp             TEEEEEEEETTTCCE-EEEECCCSS---EEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred             CEeEEEEEECCCCcE-EEecCCCCc---eEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence            4  588899877632 222211111   22222223443333222  21  25788889888753

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.01  E-value=0.078  Score=50.46  Aligned_cols=55  Identities=11%  Similarity=0.003  Sum_probs=36.7

Q ss_pred             CcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCCC
Q 042434          461 SQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSEV  517 (517)
Q Consensus       461 g~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~v  517 (517)
                      |.|.-+|+.+|+.+-+...-.....+..-.. + .++++++.||.++.+|.++|+++
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~Ta-g-glVf~G~~dg~l~A~Da~tGe~l  498 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYTK-G-GLVWYATLDGYLKALDNKDGKEL  498 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEET-T-TEEEEECTTSEEEEEETTTCCEE
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcceeEec-C-CEEEEECCCCeEEEEECCCCcEE
Confidence            4688888888887766542211111111122 3 47778999999999999999864

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.78  E-value=0.24  Score=47.03  Aligned_cols=50  Identities=6%  Similarity=0.132  Sum_probs=34.8

Q ss_pred             CCcEEEEecCCCcEEEEecCCCceeEEecCCCCCe-eEEEecCCCCcEEEE
Q 042434          450 DGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTV-NCVSWNPKRPKMLAS  499 (517)
Q Consensus       450 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v-~~v~~~~~~~~~l~s  499 (517)
                      .|.+|++|+.||.++.+|.++|+.+..+....+.. .-+.|..+|..+++.
T Consensus       487 agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~v  537 (573)
T d1kb0a2         487 AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSV  537 (573)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEE
Confidence            57788889999999999999999998876432111 114455577444443

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.75  E-value=0.24  Score=47.19  Aligned_cols=55  Identities=9%  Similarity=-0.058  Sum_probs=37.4

Q ss_pred             CcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCCC
Q 042434          461 SQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSEV  517 (517)
Q Consensus       461 g~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~v  517 (517)
                      |.|.-||..+|+.+-.... ..++.+=..+..+ .+++.|+.||.++.+|.++|+++
T Consensus       453 G~l~A~D~~TG~~~W~~~~-~~~~~gg~lsTag-glVF~G~~Dg~l~A~Da~TGe~L  507 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKME-RFAVWGGTMATAG-DLVFYGTLDGYLKARDSDTGDLL  507 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEE-SSCCCSBCEEETT-TEEEEECTTSEEEEEETTTCCEE
T ss_pred             ceEEEEeCCCCceecccCC-CCCCccceeEecC-CEEEEECCCCeEEEEECCCCcEe
Confidence            5688888888887765542 2222221222234 47778999999999999999864

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.09  Score=44.76  Aligned_cols=216  Identities=7%  Similarity=-0.006  Sum_probs=98.9

Q ss_pred             eEEEEECCCCcEEEE--eCCCCCceEEEEEeCCCCeEEEeeCC----C---ceeEEEEeCCCCeeEeeeCcCCCceEEEE
Q 042434          290 VLKLWDVETGICKHT--FGDHGFIVSSCAWFPDSKRLVCGSSD----T---EKGIFMCDCDGNEIKAWRGTRIPKVLDLA  360 (517)
Q Consensus       290 ~i~iwd~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~~~~~d----~---~v~i~~~~~~~~~~~~~~~~~~~~i~~~~  360 (517)
                      .+.+||+.+++-...  +......-..+.  -++..++.|+..    +   .-.++.+|................-...+
T Consensus        20 ~~~~yd~~t~~W~~~~~~p~~R~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~~   97 (288)
T d1zgka1          20 YLEAYNPSNGTWLRLADLQVPRSGLAGCV--VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGV   97 (288)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEE
T ss_pred             eEEEEECCCCeEEECCCCCCccceeEEEE--ECCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecceec
Confidence            688999998865432  222122222222  256666766532    1   12378888876655544322211111122


Q ss_pred             EccCCCEEEEEeCCC-----cEEEEECCCceEEeecc-CC--CeeEEEEcCCCCEEEEEeCC-----CeEEEEEcCCCCc
Q 042434          361 VTPDGENLISVLSDK-----DIRILNLGTYAERVISE-EH--PITSLSVSVDCKNFIVNLNS-----QEIHMWDVAGKWE  427 (517)
Q Consensus       361 ~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~-~~--~i~~~~~s~~~~~l~~~~~d-----~~i~~~d~~~~~~  427 (517)
                      ...+++.++.++.++     ....+|..+........ ..  .-..+... ++..++.++.+     ..+..||.....-
T Consensus        98 ~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~~GG~~~~~~~~~~~~~d~~~~~~  176 (288)
T d1zgka1          98 GVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERNEW  176 (288)
T ss_dssp             EEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEE
T ss_pred             cccceeeEEecceecccccceeeeeccccCccccccccccccccceeeee-eecceEecCcccccccceEEEeecccccc
Confidence            223566666555443     34557776655221111 11  11122222 34455555443     3567777754311


Q ss_pred             cceEEeCcccCceEEEeecCCCCCcEEEEecCC-----CcEEEEecCCCceeEEecCCCCCe-eEEEecCCCCcEEEEee
Q 042434          428 KPFKYTGHSQNKYVIRSCFGGLDGTFIASGSEN-----SQIYIWNRRNSKPIEILSGHSMTV-NCVSWNPKRPKMLASAS  501 (517)
Q Consensus       428 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~h~~~v-~~v~~~~~~~~~l~s~~  501 (517)
                      ................    -.++..++.|+.+     .....+|..+.+....-....... .+++.. ++ ++++.||
T Consensus       177 ~~~~~~~~~~~~~~~~----~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~-~l~v~GG  250 (288)
T d1zgka1         177 RMITAMNTIRSGAGVC----VLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH-QG-RIYVLGG  250 (288)
T ss_dssp             EECCCCSSCCBSCEEE----EETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TT-EEEEECC
T ss_pred             cccccccccccccccc----ceeeeEEEecCccccccccceeeeeecceeeecccCccCcccceEEEEE-CC-EEEEEec
Confidence            1111000010001111    1245666666554     356777877665433222111111 122322 45 6888887


Q ss_pred             CCCc-----EEEeCCCCC
Q 042434          502 DDHT-----IRIWGPCQS  514 (517)
Q Consensus       502 ~dg~-----v~iw~~~~~  514 (517)
                      .++.     |.+||+.+.
T Consensus       251 ~~~~~~~~~v~~yd~~~~  268 (288)
T d1zgka1         251 YDGHTFLDSVECYDPDTD  268 (288)
T ss_dssp             BCSSCBCCEEEEEETTTT
T ss_pred             CCCCeecceEEEEECCCC
Confidence            6543     778888764

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.65  E-value=0.11  Score=49.27  Aligned_cols=55  Identities=5%  Similarity=0.103  Sum_probs=38.4

Q ss_pred             CcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCCC
Q 042434          461 SQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSEV  517 (517)
Q Consensus       461 g~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~v  517 (517)
                      |.|.-||+.+|+.+-..... .+..+-...-.+ .++++|+.||.++.+|..+|+++
T Consensus       438 G~l~A~D~~tGk~~W~~~~~-~~~~gg~l~Tag-glVF~G~~dg~l~A~Da~tGe~L  492 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYP-THWNGGTLSTAG-NLVFQGTAAGQMHAYSADKGEAL  492 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEES-SSCCCCEEEETT-TEEEEECTTSEEEEEETTTCCEE
T ss_pred             cceEEEeCCCCeEeeeccCC-CCCCCceeEECC-CEEEEECCCCcEEEEECCCCcEe
Confidence            56888999999888776522 222221222234 47888999999999999999864

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.47  E-value=0.24  Score=43.22  Aligned_cols=199  Identities=13%  Similarity=0.190  Sum_probs=115.2

Q ss_pred             CCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEe------CCCCeEEEeeC--CCceeEEEE--eCCCCeeE
Q 042434          277 PDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWF------PDSKRLVCGSS--DTEKGIFMC--DCDGNEIK  346 (517)
Q Consensus       277 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~------~~~~~l~~~~~--d~~v~i~~~--~~~~~~~~  346 (517)
                      |+..+++.....+-|.+||+ .|+.+..+.  .+.+..+..-      .....+++++.  ++...+++|  +.....+.
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL-~G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~  114 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSL-EGKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEET-TCCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred             cCccEEEEEcCcCCEEEEcC-CCcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence            34567777777778999998 488777764  2344544433      12223555553  233345444  44444444


Q ss_pred             eeeCcC------CCceEEEEE--ccC-CC-EEEEEeCCCcEEEEECC---Cce-----EEeeccCCCeeEEEEcCCCCEE
Q 042434          347 AWRGTR------IPKVLDLAV--TPD-GE-NLISVLSDKDIRILNLG---TYA-----ERVISEEHPITSLSVSVDCKNF  408 (517)
Q Consensus       347 ~~~~~~------~~~i~~~~~--~~~-~~-~l~~~~~dg~i~i~d~~---~~~-----~~~~~~~~~i~~~~~s~~~~~l  408 (517)
                      .+....      ...+..+|+  ++. |. ++++...+|.+..|.+.   .+.     ...+.....+..+.+.+....|
T Consensus       115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~L  194 (353)
T d1h6la_         115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSL  194 (353)
T ss_dssp             ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEE
T ss_pred             cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcE
Confidence            333221      123556666  654 44 56677778988888663   221     3345566789999999999999


Q ss_pred             EEEeCCCeEEEEEcCCCCccceE----EeC--cccCceEEEeecCC-CCCcEEEEecCCCcEEEEecCCC-ceeEEec
Q 042434          409 IVNLNSQEIHMWDVAGKWEKPFK----YTG--HSQNKYVIRSCFGG-LDGTFIASGSENSQIYIWNRRNS-KPIEILS  478 (517)
Q Consensus       409 ~~~~~d~~i~~~d~~~~~~~~~~----~~~--~~~~~~~i~~~~~s-~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~  478 (517)
                      +++-.+..++.++..-.......    ..+  .......+.....+ .+|-+|++.-.+++..+||..+. +.+..+.
T Consensus       195 yisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F~  272 (353)
T d1h6la_         195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADFQ  272 (353)
T ss_dssp             EEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             EEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceEE
Confidence            99988888877776422111111    111  12223334333222 24555666666789999998763 6665553

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.06  E-value=0.41  Score=41.76  Aligned_cols=183  Identities=12%  Similarity=0.055  Sum_probs=104.7

Q ss_pred             EEEECCCCCEEEEeeC------------CCcEEEEEecCCCeeeEEEEeccCC-----CCEEEEEE--CCCCC-eEEEEe
Q 042434          227 FVQFSNNGEYLASSSS------------DCSAIIWKVLEDSKLTLKHTLRSHQ-----NPVSFVAW--SPDDT-KLLTCG  286 (517)
Q Consensus       227 ~~~~s~~~~~l~t~~~------------dg~i~iw~~~~~~~~~~~~~~~~h~-----~~v~~l~~--s~~~~-~l~s~~  286 (517)
                      .++..|+|..+++++.            .|.|.++|+.+.........+.+..     -....+..  .++|. +|++..
T Consensus        39 Di~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvn  118 (340)
T d1v04a_          39 DLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVN  118 (340)
T ss_dssp             EEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEE
T ss_pred             eEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEe
Confidence            5777888887766532            4889999987544322222222211     12344443  44555 344442


Q ss_pred             ---CCCeEEEEECCCCc--E--EEEeC-CCCCceEEEEEeCCCCeEEEeeC---------------CCceeEEEEeCCCC
Q 042434          287 ---NAEVLKLWDVETGI--C--KHTFG-DHGFIVSSCAWFPDSKRLVCGSS---------------DTEKGIFMCDCDGN  343 (517)
Q Consensus       287 ---~dg~i~iwd~~~~~--~--~~~~~-~~~~~v~~i~~~~~~~~l~~~~~---------------d~~v~i~~~~~~~~  343 (517)
                         ...+|-+|++....  .  +.++. ........+++..++.+++|-..               -+...++.|+....
T Consensus       119 H~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~  198 (340)
T d1v04a_         119 HPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDV  198 (340)
T ss_dssp             CSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCE
T ss_pred             ccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCce
Confidence               34578888875432  2  22332 22455788999889988887311               12334666765433


Q ss_pred             eeEeeeCcCCCceEEEEEccCCCEEEEE-eCCCcEEEEECCCce----EEeeccCCCeeEEEEcCCCCEEEEEe
Q 042434          344 EIKAWRGTRIPKVLDLAVTPDGENLISV-LSDKDIRILNLGTYA----ERVISEEHPITSLSVSVDCKNFIVNL  412 (517)
Q Consensus       344 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~  412 (517)
                      .  ..... ....+.++++||+++++++ +..+.|++|++....    ..........-.+.+.+.+..+.++.
T Consensus       199 ~--~~~~~-l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         199 R--VVAEG-FDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             E--EEEEE-ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             E--EEcCC-CCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence            2  22221 2368899999999877655 457789999987543    22233445567788876544444443

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.97  E-value=0.42  Score=41.64  Aligned_cols=186  Identities=12%  Similarity=0.163  Sum_probs=105.3

Q ss_pred             CCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEc------cCCCEEEEEe-C-C--CcEEEEECCC--ceE
Q 042434          320 DSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVT------PDGENLISVL-S-D--KDIRILNLGT--YAE  387 (517)
Q Consensus       320 ~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~------~~~~~l~~~~-~-d--g~i~i~d~~~--~~~  387 (517)
                      +..+++.....+-  ++.+++.|+.+......   .+..+..-      ....-+++++ . +  ..|.+|.+..  ...
T Consensus        39 ~~SlI~gTdK~~G--l~vYdL~G~~l~~~~~G---r~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l  113 (353)
T d1h6la_          39 QNSKLITTNKKSG--LAVYSLEGKMLHSYHTG---KLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL  113 (353)
T ss_dssp             GGCEEEEEETTSC--CEEEETTCCEEEECCSS---CEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEE
T ss_pred             CccEEEEEcCcCC--EEEEcCCCcEEEecccC---CcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccc
Confidence            3455665555554  99999999988876543   34444332      2222344444 2 2  2577777643  221


Q ss_pred             Eee--------ccCCCeeEEEE--cCC-CC-EEEEEeCCCeEEEEEcCCC--C----ccceEEeCcccCceEEEeecCCC
Q 042434          388 RVI--------SEEHPITSLSV--SVD-CK-NFIVNLNSQEIHMWDVAGK--W----EKPFKYTGHSQNKYVIRSCFGGL  449 (517)
Q Consensus       388 ~~~--------~~~~~i~~~~~--s~~-~~-~l~~~~~d~~i~~~d~~~~--~----~~~~~~~~~~~~~~~i~~~~~s~  449 (517)
                      ...        .....+..+|+  ++. +. ++++...+|.+..|.+...  .    ..++.+....    ....|.+..
T Consensus       114 ~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~----q~EGCVvDd  189 (353)
T d1h6la_         114 QSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNS----QTEGMAADD  189 (353)
T ss_dssp             EECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSS----CEEEEEEET
T ss_pred             ccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCC----ccceEEEeC
Confidence            111        11224666666  664 44 4566677899988877321  1    1222232222    244555577


Q ss_pred             CCcEEEEecCCCcEEEEecCC-----CceeEEecC--CCCCeeEEEecC--CCC-cEEEEeeCCCcEEEeCCCCC
Q 042434          450 DGTFIASGSENSQIYIWNRRN-----SKPIEILSG--HSMTVNCVSWNP--KRP-KMLASASDDHTIRIWGPCQS  514 (517)
Q Consensus       450 ~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~--h~~~v~~v~~~~--~~~-~~l~s~~~dg~v~iw~~~~~  514 (517)
                      ....|+.+-++.-|+.++...     +..+....+  ..+.+-.|+.-.  ++. .+|+|.-.|++..||+..+.
T Consensus       190 e~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~  264 (353)
T d1h6la_         190 EYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ  264 (353)
T ss_dssp             TTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred             CCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            888888888887676666532     233333322  356777777532  222 66777777899999987653

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.89  E-value=0.75  Score=43.49  Aligned_cols=51  Identities=12%  Similarity=0.266  Sum_probs=36.4

Q ss_pred             CCCcEEEEecCCCcEEEEecCCCceeEEecCCCCC-eeEEEecCCCCcEEEE
Q 042434          449 LDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMT-VNCVSWNPKRPKMLAS  499 (517)
Q Consensus       449 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~-v~~v~~~~~~~~~l~s  499 (517)
                      ..|.++++|+.||.++.+|.++|+.+..+...... -.-+.|..+|..+++.
T Consensus       495 tagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~i  546 (582)
T d1flga_         495 TAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGV  546 (582)
T ss_dssp             ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             EcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEE
Confidence            35678888999999999999999999888743221 1125666778555543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.83  E-value=0.79  Score=43.25  Aligned_cols=55  Identities=9%  Similarity=0.152  Sum_probs=37.4

Q ss_pred             CcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCCC
Q 042434          461 SQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSEV  517 (517)
Q Consensus       461 g~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~v  517 (517)
                      |.|.-||+.+|+.+-..+... +..+=..+-.+ .++++|+.||.++.+|.++|+++
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstag-glVF~G~~dg~l~A~Da~TGe~L  511 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAG-NVVFQGTADGRLVAYHAATGEKL  511 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEETT-TEEEEECTTSEEEEEETTTCCEE
T ss_pred             ccEEEeCCCCCceEeeecCCC-CCCCceEEEcC-CEEEEECCCCeEEEEECCCCcEe
Confidence            357778888888877765322 21111122234 47888999999999999999864

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.27  E-value=0.82  Score=39.71  Aligned_cols=138  Identities=12%  Similarity=0.063  Sum_probs=79.7

Q ss_pred             CCeEEEEECCCCcEEE-Ee--CCC-----CCceEEEEE--eCCCC-eEEEee---CCCceeEEEEeCCCCeeE---eeeC
Q 042434          288 AEVLKLWDVETGICKH-TF--GDH-----GFIVSSCAW--FPDSK-RLVCGS---SDTEKGIFMCDCDGNEIK---AWRG  350 (517)
Q Consensus       288 dg~i~iwd~~~~~~~~-~~--~~~-----~~~v~~i~~--~~~~~-~l~~~~---~d~~v~i~~~~~~~~~~~---~~~~  350 (517)
                      .|.|.++|+.+.+... .+  .+.     .-....+..  .+++. +|++..   ...+|.++.++..+..+.   ....
T Consensus        67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~  146 (340)
T d1v04a_          67 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH  146 (340)
T ss_dssp             CCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC
T ss_pred             CCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCC
Confidence            4788889987653221 11  111     112334443  34555 344443   345566677766665443   2233


Q ss_pred             cCCCceEEEEEccCCCEEEEEeC---------------CCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEe-C
Q 042434          351 TRIPKVLDLAVTPDGENLISVLS---------------DKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNL-N  413 (517)
Q Consensus       351 ~~~~~i~~~~~~~~~~~l~~~~~---------------dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~-~  413 (517)
                      .......++.+..++..+++-..               -+...+|...... ..........+.++++|++++++++. .
T Consensus       147 ~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~  226 (340)
T d1v04a_         147 KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAELL  226 (340)
T ss_dssp             TTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEEEEESSEEEEEECTTSSEEEEEEGG
T ss_pred             ccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEcCCCCccceeEECCCCCEEEEEeCC
Confidence            33346788999999988777421               1223344333333 23334446789999999999877765 4


Q ss_pred             CCeEEEEEcCCC
Q 042434          414 SQEIHMWDVAGK  425 (517)
Q Consensus       414 d~~i~~~d~~~~  425 (517)
                      .+.|+.|++...
T Consensus       227 ~~~i~~y~~~~~  238 (340)
T d1v04a_         227 AHKIHVYEKHAN  238 (340)
T ss_dssp             GTEEEEEEECTT
T ss_pred             CCeEEEEEeCCC
Confidence            778999998754

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.00  E-value=0.82  Score=38.31  Aligned_cols=217  Identities=8%  Similarity=-0.020  Sum_probs=98.0

Q ss_pred             cEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCC---------CeEEEEECCCCcEEEEeCCC--CCceE
Q 042434          245 SAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNA---------EVLKLWDVETGICKHTFGDH--GFIVS  313 (517)
Q Consensus       245 ~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~--~~~v~  313 (517)
                      .+.+||..++ ++..+..+......-..+..  ++..++.|+..         ..+.+||..+.+....-...  ...-.
T Consensus        20 ~~~~yd~~t~-~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~   96 (288)
T d1zgka1          20 YLEAYNPSNG-TWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIG   96 (288)
T ss_dssp             CEEEEETTTT-EEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCE
T ss_pred             eEEEEECCCC-eEEECCCCCCccceeEEEEE--CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceeccee
Confidence            4778888654 33333223222222222222  45666666531         35778888776554322111  11112


Q ss_pred             EEEEeCCCCeEEEeeCCCce---eEEEEeCCCCeeEeeeCcCCCce-EEEEEccCCCEEEEEeCC-----CcEEEEECCC
Q 042434          314 SCAWFPDSKRLVCGSSDTEK---GIFMCDCDGNEIKAWRGTRIPKV-LDLAVTPDGENLISVLSD-----KDIRILNLGT  384 (517)
Q Consensus       314 ~i~~~~~~~~l~~~~~d~~v---~i~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~  384 (517)
                      ++  ..+++.++.++.++..   ....++................. .++.. .++..++.|+.+     ..+..||..+
T Consensus        97 ~~--~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~~~GG~~~~~~~~~~~~~d~~~  173 (288)
T d1zgka1          97 VG--VIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV-LNRLLYAVGGFDGTNRLNSAECYYPER  173 (288)
T ss_dssp             EE--EETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTT
T ss_pred             cc--ccceeeEEecceecccccceeeeeccccCccccccccccccccceeee-eeecceEecCcccccccceEEEeeccc
Confidence            22  2256666666554432   14445655544333222221111 11222 244455555543     3578888877


Q ss_pred             ceEEeecc---CCCeeEEEEcCCCCEEEEEeCC-----CeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEE
Q 042434          385 YAERVISE---EHPITSLSVSVDCKNFIVNLNS-----QEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIAS  456 (517)
Q Consensus       385 ~~~~~~~~---~~~i~~~~~s~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  456 (517)
                      ........   .....+... .++..++.++.+     .....+|.....  ...............++  ..++++++.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~-~~~~i~i~GG~~~~~~~~~~~~~~~~~~~--~~~~~~~p~~r~~~~~~--~~~~~l~v~  248 (288)
T d1zgka1         174 NEWRMITAMNTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETET--WTFVAPMKHRRSALGIT--VHQGRIYVL  248 (288)
T ss_dssp             TEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTE--EEECCCCSSCCBSCEEE--EETTEEEEE
T ss_pred             cccccccccccccccccccc-eeeeEEEecCccccccccceeeeeeccee--eecccCccCcccceEEE--EECCEEEEE
Confidence            66222211   111122222 234455555443     245667765431  11111111111111111  236788888


Q ss_pred             ecCCC-----cEEEEecCCCc
Q 042434          457 GSENS-----QIYIWNRRNSK  472 (517)
Q Consensus       457 ~~~dg-----~i~iwd~~~~~  472 (517)
                      |+.++     .+.+||+.+.+
T Consensus       249 GG~~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         249 GGYDGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             CCBCSSCBCCEEEEEETTTTE
T ss_pred             ecCCCCeecceEEEEECCCCE
Confidence            87654     37889988754

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.96  E-value=1.1  Score=39.41  Aligned_cols=175  Identities=14%  Similarity=0.084  Sum_probs=98.9

Q ss_pred             cEEEEEECCCCCEEEEeeCCCcEEEEEec----------CCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEE
Q 042434          224 EVWFVQFSNNGEYLASSSSDCSAIIWKVL----------EDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKL  293 (517)
Q Consensus       224 ~v~~~~~s~~~~~l~t~~~dg~i~iw~~~----------~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i  293 (517)
                      ...-++.++...++++|+.++ +.|-...          .+........+    ..|..++|+.|  .|+.. .++.+..
T Consensus        38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~i----p~v~~vafs~d--~l~v~-~~~~l~~  109 (381)
T d1xipa_          38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEI----PDVIFVCFHGD--QVLVS-TRNALYS  109 (381)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEEC----TTEEEEEEETT--EEEEE-ESSEEEE
T ss_pred             ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCC----CCeEEEEeeCC--EEEEE-eCCCEEE
Confidence            345678888777888888875 5676642          11222333322    36899999754  45544 4556888


Q ss_pred             EECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeC-----cCCCceEEEEEccCCCEE
Q 042434          294 WDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRG-----TRIPKVLDLAVTPDGENL  368 (517)
Q Consensus       294 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l  368 (517)
                      ++..+-...........++..+.++|.  .++....++.  +..+............     .-.+.+.+++|++.|..+
T Consensus       110 ~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~--~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~  185 (381)
T d1xipa_         110 LDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVND--LSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQS  185 (381)
T ss_dssp             EESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSE--EEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEE
T ss_pred             EEeeccccccccccccccccceecCCc--eeEEEecCCC--EEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEE
Confidence            887664444444344567888888775  4555666666  7777776443322211     112357788888888877


Q ss_pred             EEEeCCCcEEE-EECCCce--EEeeccCCCeeEEEEcCCCCEEEEE
Q 042434          369 ISVLSDKDIRI-LNLGTYA--ERVISEEHPITSLSVSVDCKNFIVN  411 (517)
Q Consensus       369 ~~~~~dg~i~i-~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~  411 (517)
                      +++..++ ..+ -++....  .........+.++.|-.+..++++-
T Consensus       186 v~~~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         186 FAWRNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             EEEETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             EEeCCCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence            7764332 111 1111111  0001123467788887666555544

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.84  E-value=0.54  Score=42.84  Aligned_cols=114  Identities=9%  Similarity=0.054  Sum_probs=65.2

Q ss_pred             EEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEec------cCCCCEEEEEECCC---CCeEEEE
Q 042434          215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLR------SHQNPVSFVAWSPD---DTKLLTC  285 (517)
Q Consensus       215 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~------~h~~~v~~l~~s~~---~~~l~s~  285 (517)
                      +.++...-...++++|.|||+++++--..|.|++++..++.. ..+..+.      .-......|+|+|+   ..++...
T Consensus        19 ~~~ia~~L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~-~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvs   97 (450)
T d1crua_          19 KKVILSNLNKPHALLWGPDNQIWLTERATGKILRVNPESGSV-KTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYIS   97 (450)
T ss_dssp             EEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred             EEEEECCCCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcE-eecccCCccccccCCCCceeeEEeCCCCccCCEEEEE
Confidence            333443456788999999999888875579999988665433 3333332      12356789999985   3444432


Q ss_pred             -e------CC----Ce--EEEEECCCCc-------E-EEEeC-CCCCceEEEEEeCCCCeEEEeeC
Q 042434          286 -G------NA----EV--LKLWDVETGI-------C-KHTFG-DHGFIVSSCAWFPDSKRLVCGSS  329 (517)
Q Consensus       286 -~------~d----g~--i~iwd~~~~~-------~-~~~~~-~~~~~v~~i~~~~~~~~l~~~~~  329 (517)
                       +      .+    ..  +..+......       . +.... ........+.|.||+.++++.+.
T Consensus        98 yt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_          98 GTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             EEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             EecCCCCCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence             1      01    11  2333322211       0 11111 12234578999999987776654

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.02  E-value=1.4  Score=36.83  Aligned_cols=196  Identities=12%  Similarity=0.174  Sum_probs=119.0

Q ss_pred             EEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCC-CcEEEEe
Q 042434          227 FVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVET-GICKHTF  305 (517)
Q Consensus       227 ~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~  305 (517)
                      +.-.+|..+.||.-+ ..++.++|+++..++   +.+. ...+|.-=.|-.+. .|+..+ +..|.-|+++. ..+.+.|
T Consensus        67 sAIMhP~~~IiALra-g~~LQiFnletK~kl---ks~~-~~e~VvfWkWis~~-~L~lVT-~taVYHW~~~g~s~P~k~f  139 (327)
T d1utca2          67 SAIMNPASKVIALKA-GKTLQIFNIEMKSKM---KAHT-MTDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMF  139 (327)
T ss_dssp             EEEECSSSSEEEEEE-TTEEEEEETTTTEEE---EEEE-CSSCCCEEEESSSS-EEEEEC-SSEEEEEESSSSCCCEEEE
T ss_pred             hhhcCCCCcEEEEec-CCeEEEEehhHhhhh---ceEE-cCCCcEEEEecCCC-EEEEEc-CCceEEEcccCCCCchhhh
Confidence            355789888888766 468999999866443   3333 34577777887554 444443 45799999954 2466666


Q ss_pred             CCC----CCceEEEEEeCCCCeEEEee---CCCce--eEEEEeCCCCeeEeeeCcCCCceEEEEEccCC---CEEEEE--
Q 042434          306 GDH----GFIVSSCAWFPDSKRLVCGS---SDTEK--GIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDG---ENLISV--  371 (517)
Q Consensus       306 ~~~----~~~v~~i~~~~~~~~l~~~~---~d~~v--~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~--  371 (517)
                      ..|    ...|..-..+++.++++..+   .++.+  .+-+|..+.+.-+.+.++. +....+.+..+.   ..++.+  
T Consensus       140 dR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGha-a~F~~~~~~g~~~~~~lf~fa~r  218 (327)
T d1utca2         140 DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHA-ASFAQFKMEGNAEESTLFCFAVR  218 (327)
T ss_dssp             ECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSE-EEEEEECCTTCSSCEEEEEEEEE
T ss_pred             hhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCcccccee-eeeEEEEcCCCCCCceEEEEEEC
Confidence            655    45677778888888776543   23321  1556666655555554432 112222111111   122222  


Q ss_pred             -eCCCcEEEEECCCce---E--------Eeec---cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceE
Q 042434          372 -LSDKDIRILNLGTYA---E--------RVIS---EEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFK  431 (517)
Q Consensus       372 -~~dg~i~i~d~~~~~---~--------~~~~---~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~  431 (517)
                       ...+.+++.++....   .        ....   ...-..++.+++....+..-+.-|.+++||+.++ ..+..
T Consensus       219 ~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTg-t~i~~  292 (327)
T d1utca2         219 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG-TCIYM  292 (327)
T ss_dssp             ETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC-CEEEE
T ss_pred             CCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccc-cEEEE
Confidence             233688999886532   0        1111   1234567888888889999999999999999887 44433

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.94  E-value=1.4  Score=38.72  Aligned_cols=178  Identities=12%  Similarity=0.049  Sum_probs=92.9

Q ss_pred             CceEEEEEeCCCCeEEEeeCCCceeEEEEeCC-----------CCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEE
Q 042434          310 FIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD-----------GNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIR  378 (517)
Q Consensus       310 ~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~-----------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  378 (517)
                      ....-++.++...++++|+.++   +.+....           +......  .....|..++|+.+  .+++. .++.+.
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~---l~V~~t~~l~~~~~~~~~~~~~~~~--~~ip~v~~vafs~d--~l~v~-~~~~l~  108 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSK---AVVGELQLLRDHITSDSTPLTFKWE--KEIPDVIFVCFHGD--QVLVS-TRNALY  108 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE---EEEEEHHHHHHHHHSSSCCCCCSEE--EECTTEEEEEEETT--EEEEE-ESSEEE
T ss_pred             cccceEEEeCCCCEEEEECCCE---EEEEEHHHHHHHhhccCCCCcceec--cCCCCeEEEEeeCC--EEEEE-eCCCEE
Confidence            3455678888777888888886   3343321           1111110  11235888899755  44443 556688


Q ss_pred             EEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCccc--CceEEEeecCCCCCcEE
Q 042434          379 ILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQ--NKYVIRSCFGGLDGTFI  454 (517)
Q Consensus       379 i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l  454 (517)
                      .++.....  ........++..+.+.|.  .+++...++.+.++++....... ...+...  ......++.|++.|..+
T Consensus       109 ~~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~-~~~~v~~~~~~~~~~~v~ws~kgkq~  185 (381)
T d1xipa_         109 SLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-LAQNVTSFDVTNSQLAVLLKDRSFQS  185 (381)
T ss_dssp             EEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-EEESEEEEEECSSEEEEEETTSCEEE
T ss_pred             EEEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCcccc-ccCCcceEEecCCceEEEEeCCcEEE
Confidence            88877654  222334456777777664  67777788999999997752211 1111000  00012334446666666


Q ss_pred             EEecCCCcEEEE-ecCCCceeEEecCCCCCeeEEEecCCCCcEEEEe
Q 042434          455 ASGSENSQIYIW-NRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASA  500 (517)
Q Consensus       455 ~~~~~dg~i~iw-d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~  500 (517)
                      +++..++ ..+- ++.....+.........|.+|.|-.+. .+++..
T Consensus       186 v~~~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~-~F~vvy  230 (381)
T d1xipa_         186 FAWRNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQ-DFLAVF  230 (381)
T ss_dssp             EEEETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSS-EEEEEE
T ss_pred             EEeCCCc-eeeccCCCCccccCCCcCCCcceeEEEEecCc-eEEEEE
Confidence            6653221 1111 111111111111234568899998776 455544

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.39  E-value=5.7  Score=37.09  Aligned_cols=55  Identities=7%  Similarity=0.061  Sum_probs=39.4

Q ss_pred             CcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCCC
Q 042434          461 SQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSEV  517 (517)
Q Consensus       461 g~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~v  517 (517)
                      |.|.-+|+.+|+.+-....+. ++.+-..+..+ .++++|+.||.++.+|..+|+++
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstag-glVF~Gt~dg~l~A~Da~TGe~L  520 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAG-NLVFTGTGDGYFKAFDAKSGKEL  520 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSCCEEETT-TEEEEECTTSEEEEEETTTCCEE
T ss_pred             CeEEEEcCCCCcEEeecCCCC-CCccceeEEcC-CeEEEeCCCCeEEEEECCCCcEe
Confidence            678888999998887776432 22221222344 47788999999999999999864

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=90.45  E-value=5.9  Score=35.58  Aligned_cols=107  Identities=18%  Similarity=0.217  Sum_probs=62.4

Q ss_pred             CCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEe--C------CCCCceEEEEEeCC---CCeEEEeeC------
Q 042434          267 QNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTF--G------DHGFIVSSCAWFPD---SKRLVCGSS------  329 (517)
Q Consensus       267 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~------~~~~~v~~i~~~~~---~~~l~~~~~------  329 (517)
                      -...++|+|.||++++++--..|.|++++..+++.....  .      ........++++|+   ..++.....      
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~  105 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCC
Confidence            356789999999998887655799999998877644322  1      12356788999985   334443211      


Q ss_pred             -C----CceeEEEEeCC--CCee-------EeeeCcCCCceEEEEEccCCCEEEEEeC
Q 042434          330 -D----TEKGIFMCDCD--GNEI-------KAWRGTRIPKVLDLAVTPDGENLISVLS  373 (517)
Q Consensus       330 -d----~~v~i~~~~~~--~~~~-------~~~~~~~~~~i~~~~~~~~~~~l~~~~~  373 (517)
                       +    ....+..+...  ....       .............+.|.|||.+.++.+.
T Consensus       106 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_         106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             cccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence             1    11123333322  1111       1111111225678999999987776653

>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: GyrA/ParC C-terminal domain-like
family: GyrA/ParC C-terminal domain-like
domain: Topoisomerase IV subunit A, ParC, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.63  E-value=6.3  Score=33.44  Aligned_cols=227  Identities=7%  Similarity=0.063  Sum_probs=122.8

Q ss_pred             CCCCeEEEEeCCCeEEEEECCCC----cEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCC----------C
Q 042434          277 PDDTKLLTCGNAEVLKLWDVETG----ICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD----------G  342 (517)
Q Consensus       277 ~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~----------~  342 (517)
                      |+...+++-+.+|.|+--++.+.    ..-..++ ....+..+........++.-+..|.  +|.....          |
T Consensus         3 ~~E~v~v~lS~~GyiKR~~~~~~~~~~~~~~~~k-~~D~v~~~~~~~t~d~ll~fT~~Gr--vy~l~v~eiP~~~~~s~G   79 (323)
T d1wp5a_           3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMK-DTDRLLAMLEMNTKDVLLLFTNKGN--YLYCPVHELPDIRWKDLG   79 (323)
T ss_dssp             SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCC-TTCCEEEEEEEETTSEEEEEETTSE--EEEEEGGGSCBCCTTSCC
T ss_pred             CCCCEEEEEeCCCeEEEeeHHHhhhcCCCCCccc-CCceEEEEEEEcCCCEEEEEecCCE--EEEEeeccCccccccccc
Confidence            56777888889998886554321    0001121 2334555444445555666666676  5554421          2


Q ss_pred             CeeEeee-CcCCCceEEE-EEcc--CCCEEEEEeCCCcEEEEECCCce---------EEeeccCCCeeEEEEcCCCCEEE
Q 042434          343 NEIKAWR-GTRIPKVLDL-AVTP--DGENLISVLSDKDIRILNLGTYA---------ERVISEEHPITSLSVSVDCKNFI  409 (517)
Q Consensus       343 ~~~~~~~-~~~~~~i~~~-~~~~--~~~~l~~~~~dg~i~i~d~~~~~---------~~~~~~~~~i~~~~~s~~~~~l~  409 (517)
                      .++..+. ......+..+ ...+  ...+++..+..|.++..++....         .........+..+.+..+...++
T Consensus        80 ~pi~~ll~l~~~e~ii~~~~~~~~~~~~~l~~~Tk~G~iKr~~l~~f~~~~~~~g~~~i~L~~~D~l~~v~~~~~~~~i~  159 (323)
T d1wp5a_          80 QHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELF  159 (323)
T ss_dssp             EEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEE
T ss_pred             ccceeeecccCCcceEEEeeccccccceeEEEEeehhheeeccHHHhhhhhccchhhhccccccccccceeccCCCeEEE
Confidence            2221111 1122234333 3332  35689999999999999874432         12234455677777777778899


Q ss_pred             EEeCCCeEEEEEcCCCCccce-----EEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCC-------ceeEEe
Q 042434          410 VNLNSQEIHMWDVAGKWEKPF-----KYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS-------KPIEIL  477 (517)
Q Consensus       410 ~~~~d~~i~~~d~~~~~~~~~-----~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~  477 (517)
                      ..+..|.+..++...-...-.     ...........+......+++..++..+..|..+.-.+...       +-+..+
T Consensus       160 l~t~~G~~lrf~~~~vr~~gr~a~GV~~ikL~~~D~vv~~~~~~~~~~~ll~~T~~G~gKr~~~~e~~~~~RggkGv~~~  239 (323)
T d1wp5a_         160 LVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVIL  239 (323)
T ss_dssp             EEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECS
T ss_pred             EEEecceeeEeecccccccCcccccccccccccccccchhhhccccccceeeeeeeheeecccchhhccccccccccccc
Confidence            999999999998743211100     00111122334444444566778888888898877654321       212222


Q ss_pred             c---CCCCCeeEEEecCCCCcEEEEeeCCCcEE
Q 042434          478 S---GHSMTVNCVSWNPKRPKMLASASDDHTIR  507 (517)
Q Consensus       478 ~---~h~~~v~~v~~~~~~~~~l~s~~~dg~v~  507 (517)
                      .   .....|.++....+. ..++..+..|.+.
T Consensus       240 k~~k~~~~~v~~~~~~~~~-d~l~l~T~~g~~~  271 (323)
T d1wp5a_         240 RELKANPHRISGFVVAQDS-DTIYLQTEKSFIE  271 (323)
T ss_dssp             CCCSSSCCCEEEEEEECTT-CEEEEEETTSCEE
T ss_pred             cccccccceeeeeEecCCC-CEEEEEeCCCEEE
Confidence            2   122345555555444 3455566666554

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=86.30  E-value=6.2  Score=30.84  Aligned_cols=224  Identities=13%  Similarity=0.105  Sum_probs=109.4

Q ss_pred             CCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCC--CeEEEE------eCCCeEEEEECCCCcEEEE
Q 042434          233 NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDD--TKLLTC------GNAEVLKLWDVETGICKHT  304 (517)
Q Consensus       233 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~--~~l~s~------~~dg~i~iwd~~~~~~~~~  304 (517)
                      +.++|+++...|.+.++-+..++...    +  ...+|....- |..  .++..+      -.-..+.+-++...-....
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vk----L--tkePI~~~~~-Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~   97 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVK----L--NREPINSVLD-PHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQR   97 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEE----C--CSSCCSEECE-ECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEE
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEE----E--ecccccCcCC-CccCcceEEEEeehhcCcceeeEEEEccCCCCeeeE
Confidence            33477788788999999887654321    1  2333322211 111  112111      1112344444432112222


Q ss_pred             eCCCC-CceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeC-cCCCceEE--------EEEc-cCCCEEEEEeC
Q 042434          305 FGDHG-FIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRG-TRIPKVLD--------LAVT-PDGENLISVLS  373 (517)
Q Consensus       305 ~~~~~-~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~-~~~~~i~~--------~~~~-~~~~~l~~~~~  373 (517)
                      +.... -.|.+++.. +.+..++|+....  ..++-.++..++.+.. ...+.|++        +.+- +...-++++.-
T Consensus        98 i~spk~vRI~S~~yd-dk~vvF~Gased~--~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl  174 (313)
T d2hu7a1          98 LEAVKPMRILSGVDT-GEAVVFTGATEDR--VALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNL  174 (313)
T ss_dssp             CTTSCSBEEEEEEEC-SSCEEEEEECSSC--EEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEET
T ss_pred             ecCCceEEEEEeeec-CceEEEecccCCc--eEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEec
Confidence            32222 556666664 4456667777666  4555555555544332 12223333        3222 22223344443


Q ss_pred             -CCcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeC---CCeEEEEEcCCCCccceEEeCcc---cCceEEEeec
Q 042434          374 -DKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLN---SQEIHMWDVAGKWEKPFKYTGHS---QNKYVIRSCF  446 (517)
Q Consensus       374 -dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~---~~~~~i~~~~  446 (517)
                       .|.+++++...         +.++.....+..+. +++..   .....-+|++.+.-....+....   -....|.++.
T Consensus       175 ~SG~lri~tpke---------GS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~  244 (313)
T d2hu7a1         175 SSGGLRVFDSGE---------GSFSSASISPGMKV-TAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLG  244 (313)
T ss_dssp             TTEEEEEECCSS---------EEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEE
T ss_pred             ccCCEEEecCCC---------CcccceeEccCcee-eeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeee
Confidence             55566665544         34555555555444 33322   11222446655422222222211   1223466777


Q ss_pred             CCCCCcEEEEecCCCcEEEEecCCCceeEEec
Q 042434          447 GGLDGTFIASGSENSQIYIWNRRNSKPIEILS  478 (517)
Q Consensus       447 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  478 (517)
                      ..|++++++.+-.||.-++|.  +|+.+.+-+
T Consensus       245 Y~Pdd~L~iiakrdG~s~lF~--nGk~in~p~  274 (313)
T d2hu7a1         245 YLPDGRLAVVARREGRSAVFI--DGERVEAPQ  274 (313)
T ss_dssp             ECTTSCEEEEEEETTEEEEEE--TTEEECCCS
T ss_pred             eCCCCcEEEEEecCCchheee--cceEecCCC
Confidence            799999999999999999987  577665544

>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: GyrA/ParC C-terminal domain-like
family: GyrA/ParC C-terminal domain-like
domain: Topoisomerase IV subunit A, ParC, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=83.63  E-value=12  Score=31.69  Aligned_cols=184  Identities=8%  Similarity=0.023  Sum_probs=105.5

Q ss_pred             CCCCEEEEeeCCCcEEEEEecC-----CCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEE---EEECCC-----
Q 042434          232 NNGEYLASSSSDCSAIIWKVLE-----DSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLK---LWDVET-----  298 (517)
Q Consensus       232 ~~~~~l~t~~~dg~i~iw~~~~-----~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~---iwd~~~-----  298 (517)
                      |+...+++-+.+|-|+--....     ....    .+. -.+.+..+........|+.-+..|.+.   +|++..     
T Consensus         3 ~~E~v~v~lS~~GyiKR~~~~~~~~~~~~~~----~~k-~~D~v~~~~~~~t~d~ll~fT~~Grvy~l~v~eiP~~~~~s   77 (323)
T d1wp5a_           3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDF----AMK-DTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKD   77 (323)
T ss_dssp             SCCEEEEEEETTCEEEEEEHHHHHHTTTCCC----CCC-TTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTS
T ss_pred             CCCCEEEEEeCCCeEEEeeHHHhhhcCCCCC----ccc-CCceEEEEEEEcCCCEEEEEecCCEEEEEeeccCccccccc
Confidence            5666778888888887554421     1111    112 233454444443444555556677544   445542     


Q ss_pred             -CcEEEEeC--CCCCceEEEEEeC---CCCeEEEeeCCCceeEEEEeCC-------CCeeEeeeCcCCCceEEEEEccCC
Q 042434          299 -GICKHTFG--DHGFIVSSCAWFP---DSKRLVCGSSDTEKGIFMCDCD-------GNEIKAWRGTRIPKVLDLAVTPDG  365 (517)
Q Consensus       299 -~~~~~~~~--~~~~~v~~i~~~~---~~~~l~~~~~d~~v~i~~~~~~-------~~~~~~~~~~~~~~i~~~~~~~~~  365 (517)
                       |.++..+-  .....+..+...+   ...+++..+..|.  +......       ......+.......+..+....+.
T Consensus        78 ~G~pi~~ll~l~~~e~ii~~~~~~~~~~~~~l~~~Tk~G~--iKr~~l~~f~~~~~~~g~~~i~L~~~D~l~~v~~~~~~  155 (323)
T d1wp5a_          78 LGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGM--VKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGM  155 (323)
T ss_dssp             CCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSE--EEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSC
T ss_pred             ccccceeeecccCCcceEEEeeccccccceeEEEEeehhh--eeeccHHHhhhhhccchhhhccccccccccceeccCCC
Confidence             33332221  2234444443332   3668889999998  6655542       122333344444567777777777


Q ss_pred             CEEEEEeCCCcEEEEECCCce--------E--EeeccCCCeeEE-EEcCCCCEEEEEeCCCeEEEEEc
Q 042434          366 ENLISVLSDKDIRILNLGTYA--------E--RVISEEHPITSL-SVSVDCKNFIVNLNSQEIHMWDV  422 (517)
Q Consensus       366 ~~l~~~~~dg~i~i~d~~~~~--------~--~~~~~~~~i~~~-~~s~~~~~l~~~~~d~~i~~~d~  422 (517)
                      ..++.++..|.+..|+...-.        .  ........+.+. .+.+++..+++.+..|..+...+
T Consensus       156 ~~i~l~t~~G~~lrf~~~~vr~~gr~a~GV~~ikL~~~D~vv~~~~~~~~~~~ll~~T~~G~gKr~~~  223 (323)
T d1wp5a_         156 NELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKL  223 (323)
T ss_dssp             SEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEG
T ss_pred             eEEEEEEecceeeEeecccccccCcccccccccccccccccchhhhccccccceeeeeeeheeecccc
Confidence            889999999999999875422        1  112233445444 45567788999999998887665