Citrus Sinensis ID: 042442

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280---
MTILSQTPDTRGEHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVGREAWKRFFSKLCQDKHVLEVGGDNDFFANLGINILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRVAPPRIACLDFNLQKTKIQLGVQVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWLCLA
cccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHcccccccEEEcccHHHHHHHcccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEcccccccccEEEEEEEEEcccccccccccccccEEEEEcccccccccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHccccEEEEEEEcc
cccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHEEEcccccEEEEcccHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHEEEHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccccHHcEEEEEcccccccccEEEEEEEEEccccccccccEEcccEEEEEccccccccccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccEcHHHHHHHHHHccccEEEEEEcc
mtilsqtpdtrgehqsgqdvrtQNVVARRAVANIVKsslgpvgldiclfddigdvkitndGATILKMLEIEHPAAKVLVELAElqdrevgdgtTSVVIVAAEMLKRANDLvrnkihptsiisgyRVGREAWKRFFSKLCQdkhvlevggdndffANLGINILKAHVKSAIDSYLLNGyalntgraaqgmplrvappriacldfnlqktkIQLGVQVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGiddmaqkaslsdfnfSHFVWLCLA
mtilsqtpdtrgehqsgqdvrtqnvVARRAVANivksslgpvglDICLFDDIGDVKITNDGATILKMLEIEHPAAKVLVELAElqdrevgdgTTSVVIVAAEMLKrandlvrnkihptsiisgyrvGREAWKRFFSKLCQDKHVLEVGGDNDFFANLGINILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRVAPPRIACLDFNLQKTKIQLGVQVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKaslsdfnfSHFVWLCLA
MTILSQTPDTRGEHQSGQDVRTQnvvarravanIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVGREAWKRFFSKLCQDKHVLEVGGDNDFFANLGINILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRVAPPRIACLDFNLQKTKIQLGVQVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWLCLA
***********************NVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVGREAWKRFFSKLCQDKHVLEVGGDNDFFANLGINILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRVAPPRIACLDFNLQKTKIQLGVQVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWLCL*
**********************QNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVGREAWKRFFSKLCQDKHVLEVGGDNDFFANLGINILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRVAPPRIACLDFNLQKTKIQLGVQVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWLCLA
*********************TQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVGREAWKRFFSKLCQDKHVLEVGGDNDFFANLGINILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRVAPPRIACLDFNLQKTKIQLGVQVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWLCLA
*TILSQTPDTRGEHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVGREAWKRFFSKLCQDKHVLEVGGDNDFFANLGINILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRVAPPRIACLDFNLQKTKIQLGVQVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWLCL*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTILSQTPDTRGEHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVGREAWKRFFSKLCQDKHVLEVGGDNDFFANLGINILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRVAPPRIACLDFNLQKTKIQLGVQVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWLCLA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query283 2.2.26 [Sep-21-2011]
P28769 545 T-complex protein 1 subun yes no 0.925 0.480 0.688 1e-109
P18279 556 T-complex protein 1 subun yes no 0.879 0.447 0.530 1e-79
Q32L40 556 T-complex protein 1 subun yes no 0.879 0.447 0.533 2e-79
Q9XT06 557 T-complex protein 1 subun yes no 0.886 0.450 0.544 2e-79
P17987 556 T-complex protein 1 subun yes no 0.886 0.451 0.530 2e-78
P11983 556 T-complex protein 1 subun yes no 0.879 0.447 0.523 3e-78
P28480 556 T-complex protein 1 subun yes no 0.879 0.447 0.523 1e-77
Q4R5G2 556 T-complex protein 1 subun N/A no 0.886 0.451 0.527 3e-77
Q9W790 559 T-complex protein 1 subun N/A no 0.886 0.449 0.540 5e-77
P41988 549 T-complex protein 1 subun yes no 0.886 0.457 0.535 9e-75
>sp|P28769|TCPA_ARATH T-complex protein 1 subunit alpha OS=Arabidopsis thaliana GN=CCT1 PE=2 SV=1 Back     alignment and function desciption
 Score =  393 bits (1010), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/305 (68%), Positives = 231/305 (75%), Gaps = 43/305 (14%)

Query: 1   MTILSQTPDTRGEHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITND 60
           M+I +Q PD  G+ QSGQDVRTQNV+A +AV+NIVK+SLGPVGLD  L DDIGDV ITND
Sbjct: 1   MSISAQNPDISGDRQSGQDVRTQNVMACQAVSNIVKTSLGPVGLDKMLVDDIGDVTITND 60

Query: 61  GATILKMLEIEHPAAKVLVELAELQDREVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSI 120
           GATIL+MLE+EHPAAKVLVELAELQDREVGDGTTSVVIVAAE+LKRANDLVRNKIHPTSI
Sbjct: 61  GATILRMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSI 120

Query: 121 ISGYRVG-REAWKRFFSKLCQDKHVLE----------------VGGDNDFFANL------ 157
           ISGYR+  RE+ K    KL      L                 + GD+DFFANL      
Sbjct: 121 ISGYRLAMRESCKYIEEKLVTKVEKLGKVPLINCAKTSMSSKLISGDSDFFANLVVEAVL 180

Query: 158 ----------------GINILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRVAPPRIACL 201
                           GINILKAH +SA DSYLLNGYALNTGRAAQGMPLRV+P +IACL
Sbjct: 181 SVKMTNQRGEIKYPIKGINILKAHGQSARDSYLLNGYALNTGRAAQGMPLRVSPAKIACL 240

Query: 202 DFNLQKTKIQLGVQVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGID 261
           DFNLQKTK+QLGVQV+V +PRELEKI Q    READM KERIEKLLKAGANV+LTTKGID
Sbjct: 241 DFNLQKTKMQLGVQVVVNDPRELEKIRQ----READMTKERIEKLLKAGANVILTTKGID 296

Query: 262 DMAQK 266
           DMA K
Sbjct: 297 DMALK 301
Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.
Arabidopsis thaliana (taxid: 3702)
>sp|P18279|TCPA_CRIGR T-complex protein 1 subunit alpha OS=Cricetulus griseus GN=TCP1 PE=2 SV=1 Back     alignment and function description
>sp|Q32L40|TCPA_BOVIN T-complex protein 1 subunit alpha OS=Bos taurus GN=TCP1 PE=1 SV=1 Back     alignment and function description
>sp|Q9XT06|TCPA_MONDO T-complex protein 1 subunit alpha OS=Monodelphis domestica GN=TCP1 PE=2 SV=1 Back     alignment and function description
>sp|P17987|TCPA_HUMAN T-complex protein 1 subunit alpha OS=Homo sapiens GN=TCP1 PE=1 SV=1 Back     alignment and function description
>sp|P11983|TCPA_MOUSE T-complex protein 1 subunit alpha OS=Mus musculus GN=Tcp1 PE=1 SV=3 Back     alignment and function description
>sp|P28480|TCPA_RAT T-complex protein 1 subunit alpha OS=Rattus norvegicus GN=Tcp1 PE=1 SV=1 Back     alignment and function description
>sp|Q4R5G2|TCPA_MACFA T-complex protein 1 subunit alpha OS=Macaca fascicularis GN=TCP1 PE=2 SV=1 Back     alignment and function description
>sp|Q9W790|TCPA_PALPA T-complex protein 1 subunit alpha OS=Paleosuchus palpebrosus GN=TCP1 PE=2 SV=1 Back     alignment and function description
>sp|P41988|TCPA_CAEEL T-complex protein 1 subunit alpha OS=Caenorhabditis elegans GN=cct-1 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query283
359489326 546 PREDICTED: T-complex protein 1 subunit a 0.925 0.479 0.718 1e-110
356512570 545 PREDICTED: T-complex protein 1 subunit a 0.925 0.480 0.714 1e-110
356525315 545 PREDICTED: T-complex protein 1 subunit a 0.925 0.480 0.714 1e-110
449442275 545 PREDICTED: T-complex protein 1 subunit a 0.925 0.480 0.718 1e-110
357519247 544 T-complex protein 1 subunit alpha [Medic 0.925 0.481 0.708 1e-110
147820349310 hypothetical protein VITISV_011460 [Viti 0.943 0.861 0.709 1e-110
24371053 546 t-complex polypeptide 1 [Bruguiera sexan 0.925 0.479 0.714 1e-109
255567297 546 chaperonin containing t-complex protein 0.925 0.479 0.711 1e-109
302399081 550 TCP domain class transcription factor [M 0.925 0.476 0.698 1e-108
25083339 545 t-complex polypeptide 1 homologue [Arabi 0.925 0.480 0.691 1e-107
>gi|359489326|ref|XP_002276924.2| PREDICTED: T-complex protein 1 subunit alpha-like [Vitis vinifera] gi|297734570|emb|CBI16621.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 219/305 (71%), Positives = 233/305 (76%), Gaps = 43/305 (14%)

Query: 1   MTILSQTPDTRGEHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITND 60
           M + +QTPD  GE QSGQDVR+QNVVA +AVANIVKSSLGPVGLD  L DDIGDV ITND
Sbjct: 1   MALSAQTPDIMGERQSGQDVRSQNVVACQAVANIVKSSLGPVGLDKMLVDDIGDVTITND 60

Query: 61  GATILKMLEIEHPAAKVLVELAELQDREVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSI 120
           GATILKMLE+EHPAAKVLVELAELQDREVGDGTTSVVIVAAE+LKRANDLVRNKIHPTSI
Sbjct: 61  GATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSI 120

Query: 121 ISGYRVG-REAWKRFFSKL--------------CQDKHVLE--VGGDNDFFANL------ 157
           ISGYR+  REA K    KL              C    +    + GD+DFFA+L      
Sbjct: 121 ISGYRLAMREACKYVDEKLAVKVEKLGKDSLINCAKTSMSSKLIAGDSDFFASLVVDAVQ 180

Query: 158 ----------------GINILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRVAPPRIACL 201
                           GINILKAH KSA DSYLLNGYALNTGRAAQGMPLRVAP RIACL
Sbjct: 181 AVKTTNARGEVKYPIKGINILKAHGKSAKDSYLLNGYALNTGRAAQGMPLRVAPARIACL 240

Query: 202 DFNLQKTKIQLGVQVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGID 261
           DFNLQ+TK+QLGVQVLVT+PRELEKI Q    READM KERIEKLLKAGANVVLTTKGID
Sbjct: 241 DFNLQRTKMQLGVQVLVTDPRELEKIRQ----READMTKERIEKLLKAGANVVLTTKGID 296

Query: 262 DMAQK 266
           DMA K
Sbjct: 297 DMALK 301

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356512570|ref|XP_003524991.1| PREDICTED: T-complex protein 1 subunit alpha-like [Glycine max] Back     alignment and taxonomy information
>gi|356525315|ref|XP_003531270.1| PREDICTED: T-complex protein 1 subunit alpha-like [Glycine max] Back     alignment and taxonomy information
>gi|449442275|ref|XP_004138907.1| PREDICTED: T-complex protein 1 subunit alpha-like [Cucumis sativus] gi|449506278|ref|XP_004162702.1| PREDICTED: T-complex protein 1 subunit alpha-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357519247|ref|XP_003629912.1| T-complex protein 1 subunit alpha [Medicago truncatula] gi|355523934|gb|AET04388.1| T-complex protein 1 subunit alpha [Medicago truncatula] Back     alignment and taxonomy information
>gi|147820349|emb|CAN67647.1| hypothetical protein VITISV_011460 [Vitis vinifera] Back     alignment and taxonomy information
>gi|24371053|dbj|BAC22124.1| t-complex polypeptide 1 [Bruguiera sexangula] Back     alignment and taxonomy information
>gi|255567297|ref|XP_002524629.1| chaperonin containing t-complex protein 1, alpha subunit, tcpa, putative [Ricinus communis] gi|223536098|gb|EEF37754.1| chaperonin containing t-complex protein 1, alpha subunit, tcpa, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|302399081|gb|ADL36835.1| TCP domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information
>gi|25083339|gb|AAN72063.1| t-complex polypeptide 1 homologue [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query283
TAIR|locus:2087605 545 TCP-1 "T-complex protein 1 alp 0.487 0.253 0.748 2.6e-95
UNIPROTKB|F1SB63 556 TCP1 "T-complex protein 1 subu 0.445 0.226 0.642 3.7e-70
UNIPROTKB|B2ZDY6 556 B2ZDY6 "T-complex protein 1 su 0.445 0.226 0.642 9.8e-70
ZFIN|ZDB-GENE-990714-24 558 tcp1 "t-complex polypeptide 1" 0.459 0.232 0.648 1.2e-69
UNIPROTKB|E2R0L9 556 TCP1 "T-complex protein 1 subu 0.445 0.226 0.642 1.6e-69
UNIPROTKB|F1P5K7 564 TCP1 "T-complex protein 1 subu 0.420 0.210 0.683 1.6e-67
WB|WBGene00000377 549 cct-1 [Caenorhabditis elegans 0.427 0.220 0.663 1.4e-66
SGD|S000002620 559 TCP1 "Alpha subunit of chapero 0.445 0.225 0.625 1.4e-64
UNIPROTKB|G4NG71 566 MGG_10358 "T-complex protein 1 0.427 0.213 0.598 3.4e-62
FB|FBgn0003676 557 T-cp1 "Tcp1-like" [Drosophila 0.660 0.335 0.530 1.1e-42
TAIR|locus:2087605 TCP-1 "T-complex protein 1 alpha subunit" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 495 (179.3 bits), Expect = 2.6e-95, Sum P(3) = 2.6e-95
 Identities = 104/139 (74%), Positives = 113/139 (81%)

Query:     1 MTILSQTPDTRGEHQSGQDVRTQXXXXXXXXXXIVKSSLGPVGLDICLFDDIGDVKITND 60
             M+I +Q PD  G+ QSGQDVRTQ          IVK+SLGPVGLD  L DDIGDV ITND
Sbjct:     1 MSISAQNPDISGDRQSGQDVRTQNVMACQAVSNIVKTSLGPVGLDKMLVDDIGDVTITND 60

Query:    61 GATILKMLEIEHPAAKVLVELAELQDREVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSI 120
             GATIL+MLE+EHPAAKVLVELAELQDREVGDGTTSVVIVAAE+LKRANDLVRNKIHPTSI
Sbjct:    61 GATILRMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSI 120

Query:   121 ISGYRVG-REAWKRFFSKL 138
             ISGYR+  RE+ K    KL
Sbjct:   121 ISGYRLAMRESCKYIEEKL 139
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006457 "protein folding" evidence=IEA
GO:0044267 "cellular protein metabolic process" evidence=IEA
GO:0051082 "unfolded protein binding" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
GO:0001510 "RNA methylation" evidence=RCA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0007010 "cytoskeleton organization" evidence=RCA
GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA
GO:0009640 "photomorphogenesis" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0010388 "cullin deneddylation" evidence=RCA
GO:0010498 "proteasomal protein catabolic process" evidence=RCA
GO:0034968 "histone lysine methylation" evidence=RCA
UNIPROTKB|F1SB63 TCP1 "T-complex protein 1 subunit alpha" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|B2ZDY6 B2ZDY6 "T-complex protein 1 subunit alpha" [Oryctolagus cuniculus (taxid:9986)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-990714-24 tcp1 "t-complex polypeptide 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E2R0L9 TCP1 "T-complex protein 1 subunit alpha" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1P5K7 TCP1 "T-complex protein 1 subunit alpha" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
WB|WBGene00000377 cct-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
SGD|S000002620 TCP1 "Alpha subunit of chaperonin-containing T-complex" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
UNIPROTKB|G4NG71 MGG_10358 "T-complex protein 1 subunit alpha" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
FB|FBgn0003676 T-cp1 "Tcp1-like" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00019150001
RecName- Full=T-complex protein 1, alpha subunit; (540 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00015538001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (527 aa)
  ••••••0.761
GSVIVG00038194001
SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (535 aa)
  ••••••0.752
GSVIVG00017754001
RecName- Full=T-complex protein 1, delta subunit; (533 aa)
  ••••••0.696
GSVIVG00030706001
SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (535 aa)
  ••••••0.676
GSVIVG00018888001
SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (535 aa)
  ••••••0.671
GSVIVG00016108001
SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (562 aa)
  ••••••0.668
GSVIVG00003625001
SubName- Full=Chromosome undetermined scaffold_147, whole genome shotgun sequence; (514 aa)
  ••••••0.657
GSVIVG00025480001
SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (545 aa)
  ••••••0.655
GSVIVG00033164001
SubName- Full=Chromosome chr5 scaffold_64, whole genome shotgun sequence; (188 aa)
   •••• 0.639
GSVIVG00021307001
SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (586 aa)
   •  • 0.594

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query283
cd03335 527 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type 1e-136
TIGR02340 536 TIGR02340, chap_CCT_alpha, T-complex protein 1, al 1e-128
cd03343 517 cd03343, cpn60, cpn60 chaperonin family 3e-69
TIGR02339 519 TIGR02339, thermosome_arch, thermosome, various su 5e-65
cd00309 464 cd00309, chaperonin_type_I_II, chaperonin families 8e-64
COG0459 524 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po 1e-63
pfam00118 481 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami 3e-60
cd03340 522 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type I 5e-48
TIGR02345 523 TIGR02345, chap_CCT_eta, T-complex protein 1, eta 5e-42
cd03336 517 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type 1e-41
TIGR02343 532 TIGR02343, chap_CCT_epsi, T-complex protein 1, eps 4e-41
PTZ00212 533 PTZ00212, PTZ00212, T-complex protein 1 subunit be 5e-40
TIGR02342 517 TIGR02342, chap_CCT_delta, T-complex protein 1, de 4e-39
cd03338 515 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type 5e-39
TIGR02344 525 TIGR02344, chap_CCT_gamma, T-complex protein 1, ga 6e-38
cd03339 526 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic ty 2e-37
TIGR02341 518 TIGR02341, chap_CCT_beta, T-complex protein 1, bet 2e-34
cd03337 480 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type 3e-33
TIGR02346 531 TIGR02346, chap_CCT_theta, T-complex protein 1, th 2e-30
cd03341 472 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type 1e-26
TIGR02347 531 TIGR02347, chap_CCT_zeta, T-complex protein 1, zet 2e-23
cd03342 484 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type 2e-21
cd03344 520 cd03344, GroEL, GroEL_like type I chaperonin 5e-10
cd03333209 cd03333, chaperonin_like, chaperonin_like superfam 3e-09
PRK14104 546 PRK14104, PRK14104, chaperonin GroEL; Provisional 3e-08
PRK12850 544 PRK12850, groEL, chaperonin GroEL; Reviewed 1e-07
PLN03167 600 PLN03167, PLN03167, Chaperonin-60 beta subunit; Pr 2e-07
PTZ00114 555 PTZ00114, PTZ00114, Heat shock protein 60; Provisi 5e-07
PRK12851 541 PRK12851, groEL, chaperonin GroEL; Reviewed 8e-07
TIGR02348 524 TIGR02348, GroEL, chaperonin GroL 9e-07
PRK12849 542 PRK12849, groEL, chaperonin GroEL; Reviewed 2e-06
PRK12852 545 PRK12852, groEL, chaperonin GroEL; Reviewed 3e-06
PRK00013 542 PRK00013, groEL, chaperonin GroEL; Reviewed 5e-06
CHL00093 529 CHL00093, groEL, chaperonin GroEL 3e-04
>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information 
 Score =  395 bits (1016), Expect = e-136
 Identities = 181/294 (61%), Positives = 211/294 (71%), Gaps = 43/294 (14%)

Query: 12  GEHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIE 71
           GE  SGQDVRTQNV A  A+ANIVKSSLGPVGLD  L DDIGDV ITNDGATILK+LE+E
Sbjct: 1   GERTSGQDVRTQNVTAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVE 60

Query: 72  HPAAKVLVELAELQDREVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REA 130
           HPAAK+LVELA+LQD+EVGDGTTSVVI+AAE+LKRAN+LV+ KIHPT+IISGYR+  +EA
Sbjct: 61  HPAAKILVELAQLQDKEVGDGTTSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEA 120

Query: 131 WKRFFSKLCQ-----DKHVLE-----------VGGDNDFFANL----------------- 157
            K     L        K  L            +G D+DFFAN+                 
Sbjct: 121 VKYIKEHLSISVDNLGKESLINVAKTSMSSKIIGADSDFFANMVVDAILAVKTTNEKGKT 180

Query: 158 -----GINILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRVAPPRIACLDFNLQKTKIQL 212
                 +NILKAH KSA +SYL+NGYALN  RA+QGMP RV   +IACLDFNLQKTK++L
Sbjct: 181 KYPIKAVNILKAHGKSAKESYLVNGYALNCTRASQGMPTRVKNAKIACLDFNLQKTKMKL 240

Query: 213 GVQVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQK 266
           GVQV+VT+P +LEKI Q    RE+D+ KERI+K+L AGANVVLTT GIDDM  K
Sbjct: 241 GVQVVVTDPEKLEKIRQ----RESDITKERIKKILAAGANVVLTTGGIDDMCLK 290

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 527
>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit Back     alignment and domain information
>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal Back     alignment and domain information
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II Back     alignment and domain information
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit Back     alignment and domain information
>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit Back     alignment and domain information
>gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit Back     alignment and domain information
>gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit Back     alignment and domain information
>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit Back     alignment and domain information
>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit Back     alignment and domain information
>gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit Back     alignment and domain information
>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin Back     alignment and domain information
>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily Back     alignment and domain information
>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional Back     alignment and domain information
>gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|215611 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional Back     alignment and domain information
>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL Back     alignment and domain information
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|234573 PRK00013, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|177025 CHL00093, groEL, chaperonin GroEL Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 283
TIGR02343 532 chap_CCT_epsi T-complex protein 1, epsilon subunit 100.0
cd03339 526 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha 100.0
TIGR02339 519 thermosome_arch thermosome, various subunits, arch 100.0
cd03335 527 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02344 525 chap_CCT_gamma T-complex protein 1, gamma subunit. 100.0
TIGR02347 531 chap_CCT_zeta T-complex protein 1, zeta subunit. M 100.0
cd03343 517 cpn60 cpn60 chaperonin family. Chaperonins are inv 100.0
cd03340 522 TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero 100.0
TIGR02340 536 chap_CCT_alpha T-complex protein 1, alpha subunit. 100.0
TIGR02342 517 chap_CCT_delta T-complex protein 1, delta subunit. 100.0
KOG0358 534 consensus Chaperonin complex component, TCP-1 delt 100.0
TIGR02345 522 chap_CCT_eta T-complex protein 1, eta subunit. Mem 100.0
PTZ00212 533 T-complex protein 1 subunit beta; Provisional 100.0
cd03336 517 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper 100.0
cd03338 515 TCP1_delta TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02341 519 chap_CCT_beta T-complex protein 1, beta subunit. M 100.0
TIGR02346 531 chap_CCT_theta T-complex protein 1, theta subunit. 100.0
KOG0361 543 consensus Chaperonin complex component, TCP-1 eta 100.0
COG0459 524 GroL Chaperonin GroEL (HSP60 family) [Posttranslat 100.0
cd03342 484 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper 100.0
KOG0360 545 consensus Chaperonin complex component, TCP-1 alph 100.0
KOG0362 537 consensus Chaperonin complex component, TCP-1 thet 100.0
cd03337 480 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape 100.0
KOG0363 527 consensus Chaperonin complex component, TCP-1 beta 100.0
PF00118 485 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon 100.0
PRK12849 542 groEL chaperonin GroEL; Reviewed 100.0
cd00309 464 chaperonin_type_I_II chaperonin families, type I a 100.0
PRK00013 542 groEL chaperonin GroEL; Reviewed 100.0
cd03341 472 TCP1_theta TCP-1 (CTT or eukaryotic type II) chape 100.0
PTZ00114 555 Heat shock protein 60; Provisional 100.0
TIGR02348 524 GroEL chaperonin GroL. This family consists of Gro 100.0
cd03344 520 GroEL GroEL_like type I chaperonin. Chaperonins ar 100.0
PRK12851 541 groEL chaperonin GroEL; Reviewed 100.0
PRK12850 544 groEL chaperonin GroEL; Reviewed 100.0
KOG0364 527 consensus Chaperonin complex component, TCP-1 gamm 100.0
CHL00093 529 groEL chaperonin GroEL 100.0
PRK12852 545 groEL chaperonin GroEL; Reviewed 100.0
PLN03167 600 Chaperonin-60 beta subunit; Provisional 100.0
PRK14104 546 chaperonin GroEL; Provisional 100.0
KOG0359 520 consensus Chaperonin complex component, TCP-1 zeta 100.0
KOG0357 400 consensus Chaperonin complex component, TCP-1 epsi 99.96
KOG0356 550 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [ 99.92
cd03334261 Fab1_TCP TCP-1 like domain of the eukaryotic phosp 99.87
cd03333209 chaperonin_like chaperonin_like superfamily. Chape 99.43
KOG0230 1598 consensus Phosphatidylinositol-4-phosphate 5-kinas 98.98
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit Back     alignment and domain information 
Probab=100.00  E-value=9.7e-59  Score=453.87  Aligned_cols=264  Identities=31%  Similarity=0.491  Sum_probs=244.7

Q ss_pred             ccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccchhHHHHHHHHHhhhHcCC
Q 042442           12 GEHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVGD   91 (283)
Q Consensus        12 ~~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GD   91 (283)
                      .+...|.+++..|+.||..+++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|++++|++|++++||
T Consensus        20 ~~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~G~~~ITnDG~tIlk~l~~~hP~akll~~~a~~qd~~~GD   99 (532)
T TIGR02343        20 KKRLKGLEAIKSNIAAAKSVASILRTSLGPKGMDKMLQSPDGDITVTNDGATILSQMDVDNPIAKLMVELSKSQDDEIGD   99 (532)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEcCCCCEEEeCcHHHHHHHccCCCHHHHHHHHHHHHHHHHhcC
Confidence            45889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc-C------ceE------EE-----ecCCc
Q 042442           92 GTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD-K------HVL------EV-----GGDND  152 (283)
Q Consensus        92 Gttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~-~------~~L------~i-----s~~~~  152 (283)
                      ||||+++||++||++|.+|+++|+||+.|++||+.| +.+++.|++ ++++ .      +.|      .+     +...+
T Consensus       100 GTttvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~-~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~  178 (532)
T TIGR02343       100 GTTGVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEHLEE-ISEEISDDNNNKEPLIQAAKTSLGSKIVSKCHR  178 (532)
T ss_pred             CcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-hccccCcCCCCHHHHHHHHHHhhccchhhHHHH
Confidence            999999999999999999999999999999999999 999999988 4775 1      223      11     11234


Q ss_pred             hhhhh-------------------hhhhhhccCCCeeeEEEEeceEeccccCCCCCcceecCCEEEEecccccccccccC
Q 042442          153 FFANL-------------------GINILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRVAPPRIACLDFNLQKTKIQLG  213 (283)
Q Consensus       153 ~~s~l-------------------~I~i~k~~Gg~~~ds~li~G~v~~~~~~~~~m~~~~~~~kIli~~~~le~~k~~~~  213 (283)
                      .|+++                   +|++.|++||+++||++++|++|++++.+++||+.++||||++++|+|++++++.+
T Consensus       179 ~ls~i~~~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~ds~~v~Gi~i~~~~~~~~m~~~~~n~kI~l~~~~le~~~~~~~  258 (532)
T TIGR02343       179 RFAEIAVDAVLMVADMERRDVDFDLIKVEGKVGGSLEDTKLIKGIIIDKDFSHPQMPKEVKDAKIAILTCPFEPPKPKTK  258 (532)
T ss_pred             HHHHHHHHHHHhhhhcCCCcCCHHHeeEEEecCCCcccceeEeeEEEecCcCCCCCCeeecCCcEEEEEeeccccccccc
Confidence            45444                   56778889999999999999999999999999999999999999999999999999


Q ss_pred             eeEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEEeec
Q 042442          214 VQVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWLC  281 (283)
Q Consensus       214 ~~i~~~s~~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~~~  281 (283)
                      +++.++++++++.+.+    .|++++++++++|++.|++||+|+++|+|.+++||.+ +||++++|++
T Consensus       259 ~~~~i~~~~~~~~~~~----~E~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~L~~-~~i~~v~~~~  321 (532)
T TIGR02343       259 HKLDISSVEEYKKLQK----YEQQKFAEMIDDIKKSGANIVICQWGFDDEANHLLLQ-NDLPAVRWVG  321 (532)
T ss_pred             eeEEeCCHHHHHHHHH----HHHHHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHH-CCcEEEEcCC
Confidence            9999999999999999    9999999999999999999999999999999999997 9999999986

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal Back     alignment and domain information
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit Back     alignment and domain information
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit Back     alignment and domain information
>cd03343 cpn60 cpn60 chaperonin family Back     alignment and domain information
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit Back     alignment and domain information
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit Back     alignment and domain information
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit Back     alignment and domain information
>PTZ00212 T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit Back     alignment and domain information
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit Back     alignment and domain information
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism Back     alignment and domain information
>PRK12849 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II Back     alignment and domain information
>PRK00013 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>PTZ00114 Heat shock protein 60; Provisional Back     alignment and domain information
>TIGR02348 GroEL chaperonin GroL Back     alignment and domain information
>cd03344 GroEL GroEL_like type I chaperonin Back     alignment and domain information
>PRK12851 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12850 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>CHL00093 groEL chaperonin GroEL Back     alignment and domain information
>PRK12852 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PLN03167 Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>PRK14104 chaperonin GroEL; Provisional Back     alignment and domain information
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information
>cd03333 chaperonin_like chaperonin_like superfamily Back     alignment and domain information
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query283
3iyg_A 529 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 9e-77
3p9d_A 559 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-70
1a6d_B 543 Thermosome From T. Acidophilum Length = 543 3e-41
3ko1_A 553 Cystal Structure Of Thermosome From Acidianus Tengc 1e-39
1a6d_A 545 Thermosome From T. Acidophilum Length = 545 4e-39
3rus_A 543 Crystal Structure Of Cpn-Rls In Complex With Adp Fr 3e-38
3los_A 543 Atomic Model Of Mm-Cpn In The Closed State Length = 4e-38
3izh_A 513 Mm-Cpn D386a With Atp Length = 513 5e-38
3izi_A 513 Mm-Cpn Rls With Atp Length = 513 5e-38
1q3r_A 548 Crystal Structure Of The Chaperonin From Thermococc 4e-35
1q3s_A 548 Crystal Structure Of The Chaperonin From Thermococc 1e-34
1q2v_A 548 Crystal Structure Of The Chaperonin From Thermococc 5e-34
3iyf_A 521 Atomic Model Of The Lidless Mm-Cpn In The Open Stat 5e-33
3izk_A 491 Mm-Cpn Rls Deltalid With Atp Length = 491 1e-32
3j02_A 491 Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Boun 1e-32
3izn_A 491 Mm-Cpn Deltalid With Atp Length = 491 1e-32
3aq1_B 500 Open State Monomer Of A Group Ii Chaperonin From Me 7e-32
3iyg_G 515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 5e-26
3p9d_E 562 The Crystal Structure Of Yeast Cct Reveals Intrinsi 5e-26
3iyg_D 518 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 7e-24
3iyg_B 513 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 2e-23
3iyg_H 515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 3e-23
3p9d_B 527 The Crystal Structure Of Yeast Cct Reveals Intrinsi 5e-23
3p9d_G 550 The Crystal Structure Of Yeast Cct Reveals Intrinsi 6e-23
3iyg_E 515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 3e-22
3p9d_C 590 The Crystal Structure Of Yeast Cct Reveals Intrinsi 8e-21
3p9d_D 528 The Crystal Structure Of Yeast Cct Reveals Intrinsi 3e-19
3iyg_Z 517 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 2e-17
3p9d_F 546 The Crystal Structure Of Yeast Cct Reveals Intrinsi 2e-14
3p9d_H 568 The Crystal Structure Of Yeast Cct Reveals Intrinsi 4e-14
3iyg_Q 512 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 2e-12
1e0r_B159 Beta-Apical Domain Of Thermosome Length = 159 4e-11
1ass_A159 Apical Domain Of The Chaperonin From Thermoplasma A 6e-10
3rtk_A 546 Crystal Structure Of Cpn60.2 From Mycobacterium Tub 2e-06
1iok_A 545 Crystal Structure Of Chaperonin-60 From Paracoccus 3e-06
1we3_A 543 Crystal Structure Of The Chaperonin Complex Cpn60CP 2e-05
3c9v_A 526 C7 Symmetrized Structure Of Unliganded Groel At 4.7 8e-05
2yey_A 524 Crystal Structure Of The Allosteric-Defective Chape 9e-05
1j4z_A 547 Structural And Mechanistic Basis For Allostery In T 9e-05
1aon_A 547 Crystal Structure Of The Asymmetric Chaperonin Comp 9e-05
1pcq_A 524 Crystal Structure Of Groel-Groes Length = 524 9e-05
2eu1_A 548 Crystal Structure Of The Chaperonin Groel-E461k Len 9e-05
4aaq_A 548 Atp-Triggered Molecular Mechanics Of The Chaperonin 1e-04
1grl_A 548 The Crystal Structure Of The Bacterial Chaperonin G 2e-04
1ss8_A 524 Groel Length = 524 2e-04
3cau_A 526 D7 Symmetrized Structure Of Unliganded Groel At 4.2 2e-04
1kp8_A 547 Structural Basis For Groel-Assisted Protein Folding 2e-04
1sx3_A 525 Groel14-(Atpgammas)14 Length = 525 2e-04
1gr5_A 547 Solution Structure Of Apo Groel By Cryo-Electron Mi 2e-04
1oel_A 547 Conformational Variability In The Refined Structure 2e-04
1gml_A178 Crystal Structure Of The Mouse Cct Gamma Apical Dom 4e-04
>pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 529 Back     alignment and structure 
Iteration: 1

 Score =  283 bits (723), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 153/296 (51%), Positives = 195/296 (65%), Gaps = 47/296 (15%)
Query: 12  GEHQSGQDVRTQXXXXXXXXXXIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIE 71
           G+  +G+ +R+Q          IVKSSLGPVGLD  L DDIGDV ITNDGATILK+LE+E
Sbjct: 3   GDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVE 62
Query: 72  HPAAKVLVELAELQDREVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVGREAW 131
           HPAAKVL ELA+LQD+EVGDGTTSVVI+AAE+LK A++LV+ KIHPTS+ISGYR+  +  
Sbjct: 63  HPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEA 122
Query: 132 KRFFS-------------------KLCQDKHVLEVGGDNDFFANL--------------- 157
            R+ S                   K      V+ + G  DFFANL               
Sbjct: 123 VRYISENLIINTDELGRDCLINAAKTSMSSKVIGING--DFFANLVVDAVLAIKYTDIRG 180
Query: 158 -------GINILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRVAPPRIACLDFNLQKTKI 210
                   IN+LKAH +S ++S L+NGYALN    +QGMP R+   +IACLDF+LQKTK+
Sbjct: 181 QPRYPVNSINVLKAHGRSQMESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKM 240
Query: 211 QLGVQVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQK 266
           +LGVQV++T+P +L++I Q    RE+D+ KERI+K+L  GANV+LTT GIDDM  K
Sbjct: 241 KLGVQVVITDPEKLDQIRQ----RESDITKERIQKILATGANVILTTGGIDDMCLK 292
>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 559 Back     alignment and structure
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum Length = 543 Back     alignment and structure
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus Tengchongensis Strain S5 Length = 553 Back     alignment and structure
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum Length = 545 Back     alignment and structure
>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From Methanococcus Maripaludis Length = 543 Back     alignment and structure
>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State Length = 543 Back     alignment and structure
>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp Length = 513 Back     alignment and structure
>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp Length = 513 Back     alignment and structure
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form Of Single Mutant) Length = 548 Back     alignment and structure
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Formiii Crystal Complexed With Adp) Length = 548 Back     alignment and structure
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form) Length = 548 Back     alignment and structure
>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State Length = 521 Back     alignment and structure
>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State Length = 491 Back     alignment and structure
>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From Methanococcoides Burtonii Length = 500 Back     alignment and structure
>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 562 Back     alignment and structure
>pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 518 Back     alignment and structure
>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 513 Back     alignment and structure
>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 527 Back     alignment and structure
>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 550 Back     alignment and structure
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 590 Back     alignment and structure
>pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 528 Back     alignment and structure
>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 517 Back     alignment and structure
>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 546 Back     alignment and structure
>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 568 Back     alignment and structure
>pdb|3IYG|Q Chain Q, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 512 Back     alignment and structure
>pdb|1E0R|B Chain B, Beta-Apical Domain Of Thermosome Length = 159 Back     alignment and structure
>pdb|1ASS|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma Acidophilum Length = 159 Back     alignment and structure
>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium Tuberculosis At 2.8a Length = 546 Back     alignment and structure
>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus Denitrificans Length = 545 Back     alignment and structure
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS Length = 543 Back     alignment and structure
>pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7 Angstrom Resolution From Cryoem Length = 526 Back     alignment and structure
>pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin Groel E434k Mutant Length = 524 Back     alignment and structure
>pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The Bacterial Chaperonin Groel; See Remark 400 Length = 547 Back     alignment and structure
>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex GroelGROES(ADP)7 Length = 547 Back     alignment and structure
>pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes Length = 524 Back     alignment and structure
>pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k Length = 548 Back     alignment and structure
>pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel Length = 548 Back     alignment and structure
>pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At 2.8 Angstroms Length = 548 Back     alignment and structure
>pdb|1SS8|A Chain A, Groel Length = 524 Back     alignment and structure
>pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2 Angstrom Resolution By Cryoem Length = 526 Back     alignment and structure
>pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A Resolution Length = 547 Back     alignment and structure
>pdb|1SX3|A Chain A, Groel14-(Atpgammas)14 Length = 525 Back     alignment and structure
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron Microscopy Length = 547 Back     alignment and structure
>pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The Chaperonin Groel At 2.8 Angstrom Resolution Length = 547 Back     alignment and structure
>pdb|1GML|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain (Triclinic) Length = 178 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query283
3iyg_A 529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 1e-103
1a6d_A 545 Thermosome (alpha subunit); group II chaperonin, C 1e-103
3ko1_A 553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 1e-102
1a6d_B 543 Thermosome (beta subunit); group II chaperonin, CC 1e-102
3p9d_A 559 T-complex protein 1 subunit alpha; HSP60, eukaryot 1e-101
3iyg_G 515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 1e-101
3ruv_A 543 Chaperonin, CPN; double-ring, protein folding mach 1e-100
1q3q_A 548 Thermosome alpha subunit; chaperone, chaperonin; H 6e-99
3p9d_D 528 T-complex protein 1 subunit delta; HSP60, eukaryot 7e-99
3p9d_E 562 T-complex protein 1 subunit epsilon; HSP60, eukary 9e-99
3p9d_G 550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 1e-98
3iyg_E 515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 2e-98
3iyg_H 515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 2e-98
3iyg_D 518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 1e-97
3p9d_B 527 T-complex protein 1 subunit beta; HSP60, eukaryoti 3e-96
3p9d_C 590 T-complex protein 1 subunit gamma; HSP60, eukaryot 1e-95
3iyg_B 513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 2e-95
3iyg_Z 517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 1e-94
3p9d_F 546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 4e-93
3iyg_Q 512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 5e-93
3p9d_H 568 T-complex protein 1 subunit theta; HSP60, eukaryot 7e-91
3aq1_B 500 Thermosome subunit; group II chaperonin, protein f 5e-86
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 1e-29
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 9e-29
3rtk_A 546 60 kDa chaperonin 2; heat shock protein, chaperone 8e-06
1iok_A 545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 9e-06
1kp8_A 547 Groel protein; chaperonin, assisted protein foldin 1e-05
1we3_A 543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 2e-05
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529 Back     alignment and structure
 Score =  309 bits (795), Expect = e-103
 Identities = 151/294 (51%), Positives = 195/294 (66%), Gaps = 43/294 (14%)

Query: 12  GEHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIE 71
           G+  +G+ +R+QNV+A  ++ANIVKSSLGPVGLD  L DDIGDV ITNDGATILK+LE+E
Sbjct: 3   GDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVE 62

Query: 72  HPAAKVLVELAELQDREVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYR------ 125
           HPAAKVL ELA+LQD+EVGDGTTSVVI+AAE+LK A++LV+ KIHPTS+ISGYR      
Sbjct: 63  HPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEA 122

Query: 126 --------------VGREA----------------WKRFFSKLCQD--KHVLEVGGDNDF 153
                         +GR+                    FF+ L  D    +         
Sbjct: 123 VRYISENLIINTDELGRDCLINAAKTSMSSKVIGINGDFFANLVVDAVLAIKYTDIRGQP 182

Query: 154 FANL-GINILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRVAPPRIACLDFNLQKTKIQL 212
              +  IN+LKAH +S ++S L+NGYALN    +QGMP R+   +IACLDF+LQKTK++L
Sbjct: 183 RYPVNSINVLKAHGRSQMESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKL 242

Query: 213 GVQVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQK 266
           GVQV++T+P +L     +   RE+D+ KERI+K+L  GANV+LTT GIDDM  K
Sbjct: 243 GVQVVITDPEKL----DQIRQRESDITKERIQKILATGANVILTTGGIDDMCLK 292
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545 Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553 Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543 Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* Length = 559 Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543 Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548 Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* Length = 528 Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* Length = 562 Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550 Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 518 Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* Length = 527 Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590 Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Length = 513 Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517 Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* Length = 546 Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 512 Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* Length = 568 Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Length = 500 Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Length = 178 Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Length = 159 Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Length = 546 Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Length = 545 Back     alignment and structure
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Length = 547 Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Length = 543 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query283
3iyg_G 515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 100.0
3iyg_A 529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 100.0
3iyg_H 515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 100.0
3ruv_A 543 Chaperonin, CPN; double-ring, protein folding mach 100.0
3ko1_A 553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 100.0
1q3q_A 548 Thermosome alpha subunit; chaperone, chaperonin; H 100.0
3p9d_D 528 T-complex protein 1 subunit delta; HSP60, eukaryot 100.0
1a6d_B 543 Thermosome (beta subunit); group II chaperonin, CC 100.0
3iyg_B 513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 100.0
3iyg_E 515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 100.0
3iyg_Z 517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 100.0
3p9d_G 550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 100.0
1a6d_A 545 Thermosome (alpha subunit); group II chaperonin, C 100.0
3iyg_D 518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 100.0
3p9d_A 559 T-complex protein 1 subunit alpha; HSP60, eukaryot 100.0
3p9d_E 562 T-complex protein 1 subunit epsilon; HSP60, eukary 100.0
3p9d_C 590 T-complex protein 1 subunit gamma; HSP60, eukaryot 100.0
3iyg_Q 512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 100.0
3p9d_F 546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 100.0
3p9d_H 568 T-complex protein 1 subunit theta; HSP60, eukaryot 100.0
3p9d_B 527 T-complex protein 1 subunit beta; HSP60, eukaryoti 100.0
1we3_A 543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 100.0
3aq1_B 500 Thermosome subunit; group II chaperonin, protein f 100.0
1kp8_A 547 Groel protein; chaperonin, assisted protein foldin 100.0
1iok_A 545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 100.0
3rtk_A 546 60 kDa chaperonin 2; heat shock protein, chaperone 100.0
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 99.92
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 99.9
3m6c_A 194 60 kDa chaperonin 1; chaperone, ATP-binding, nucle 97.65
1srv_A145 Protein (groel (HSP60 class)); chaperone, cell div 97.38
3osx_A 201 60 kDa chaperonin; alpha, beta, apical domain, cha 97.26
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
Probab=100.00  E-value=1.9e-63  Score=483.96  Aligned_cols=265  Identities=30%  Similarity=0.484  Sum_probs=244.9

Q ss_pred             cccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccchhHHHHHHHHHhhhHcC
Q 042442           11 RGEHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVG   90 (283)
Q Consensus        11 ~~~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~G   90 (283)
                      ++++.+|.+++..|+.||+.+++++||||||+||+|||+++.|+++|||||+|||++|+++||+|||++++|++||+++|
T Consensus         1 ~~~~~~g~~~~~~ni~a~~~la~~vkttLGP~G~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~e~G   80 (515)
T 3iyg_G            1 NTKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVG   80 (515)
T ss_pred             CCcccchHHHHHHHHHHHHHHHHHHhcCcCCCCCeEEEECCCCCeEEECCHHHHHHhcccCCHHHHHHHHHHHHhhhhhC
Confidence            35778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc-----CceE-----------EEecCCch
Q 042442           91 DGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD-----KHVL-----------EVGGDNDF  153 (283)
Q Consensus        91 DGttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~-----~~~L-----------~is~~~~~  153 (283)
                      |||||++|||++||++|.+++++|+||+.|++||++| +.++++|++ ++.+     ++.|           .++...++
T Consensus        81 DGTTtvvvLAgeLL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~-~s~~v~~~~~~~l~~va~tsl~sK~i~~~~~~  159 (515)
T 3iyg_G           81 DGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKK-ISIPVDTSNRDTMLNIINSSITTKVISRWSSL  159 (515)
T ss_pred             CChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-hhcccCCCCHHHHHHHHHHHhcCCchhhHHHH
Confidence            9999999999999999999999999999999999999 999999998 5776     1233           12222223


Q ss_pred             hhhh----------------------hhhhhhccCCCeeeEEEEeceEeccccCCCCCcceecCCEEEEecccccccccc
Q 042442          154 FANL----------------------GINILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRVAPPRIACLDFNLQKTKIQ  211 (283)
Q Consensus       154 ~s~l----------------------~I~i~k~~Gg~~~ds~li~G~v~~~~~~~~~m~~~~~~~kIli~~~~le~~k~~  211 (283)
                      ++++                      +|+|+|++||+++||++++|++|++++.|++||++++||||++++|||++++++
T Consensus       160 ~~~i~vdav~~V~~~~~~~~~~dl~~~I~I~ki~Ggs~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~~~~Le~~k~e  239 (515)
T 3iyg_G          160 ACNIALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGE  239 (515)
T ss_pred             HHHHHHHHHHhcccccCCCcccchhheeEEEEecCCCcccceEEeeEEEeCCCCCCCCcceeeeeEEEEEcccccccccc
Confidence            3322                      267778889999999999999999999999999999999999999999999999


Q ss_pred             cCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEEeec
Q 042442          212 LGVQVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWLC  281 (283)
Q Consensus       212 ~~~~i~~~s~~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~~~  281 (283)
                      .++++.++++++++++.+    +|++++++++++|++.|++||+|+++|+|++++||.+ +||++|+|+.
T Consensus       240 ~~~~v~is~~~~l~~~l~----~E~~~l~~~v~kI~~~g~~vIi~~~~I~~~al~~L~~-~~I~av~~~~  304 (515)
T 3iyg_G          240 SQTDIEITREEDFTRILQ----MEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMR-ANITAIRRVR  304 (515)
T ss_pred             cCceEEeCCHHHHHHHHH----HHHHHHHHHHHHHHhCCCCEEEECCccCHHHHHHHHH-CCceeeccCC
Confidence            999999999999999999    9999999999999999999999999999999999998 9999999985
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d* Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g* Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a* Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e* Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f* Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h* Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b* Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Back     alignment and structure
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Back     alignment and structure
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Back     alignment and structure
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Back     alignment and structure
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 283
d1a6da1245 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai 8e-29
d1a6db1243 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai 2e-27
d1q3qa1258 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain 2e-24
d1ioka1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par 3e-17
d1gmla_168 c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musc 6e-17
d1assa_152 c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermo 3e-16
d1kp8a1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc 3e-16
d1q3qa2153 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon 6e-16
d1a6db2152 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon 3e-15
d1we3a1255 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The 6e-12
d1sjpa1180 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My 7e-09
d1q3qa3107 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domai 2e-06
d1a6da3105 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domai 5e-05
d1a6db3107 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domai 5e-04
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 Back     information, alignment and structure

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]

 Score =  108 bits (270), Expect = 8e-29
 Identities = 58/150 (38%), Positives = 94/150 (62%), Gaps = 3/150 (2%)

Query: 15  QSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPA 74
           + G++ +  N+ A +A+A+ V+++LGP G+D  L D IGD+ I+NDGATILK +++EHP 
Sbjct: 2   EQGKNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHPT 61

Query: 75  AKVLVELAELQDREVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVGREAWKRF 134
           AK++VE+++ QD  VGDGTT+ V+++ E+LK+A  L+   +HPT I +GY   R A    
Sbjct: 62  AKMIVEVSKAQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGY---RLAVNEA 118

Query: 135 FSKLCQDKHVLEVGGDNDFFANLGINILKA 164
              + +      + G     A L + + K 
Sbjct: 119 RKIIDEIAEKSFLWGGGAVEAELAMRLAKY 148
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 Back     information, alignment and structure
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Length = 168 Back     information, alignment and structure
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 152 Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252 Back     information, alignment and structure
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 153 Back     information, alignment and structure
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 152 Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180 Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 107 Back     information, alignment and structure
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 105 Back     information, alignment and structure
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 107 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query283
d1q3qa1258 Thermosome, E domain {Archaeon Thermococcus sp. ks 100.0
d1a6da1245 Thermosome, E domain {Archaeon Thermoplasma acidop 99.97
d1a6db1243 Thermosome, E domain {Archaeon Thermoplasma acidop 99.97
d1kp8a1252 GroEL, E domain {Escherichia coli [TaxId: 562]} 99.94
d1ioka1252 GroEL, E domain {Paracoccus denitrificans [TaxId: 99.92
d1gmla_168 Thermosome, A-domain {Mouse (Mus musculus), gamma 99.9
d1we3a1255 GroEL, E domain {Thermus thermophilus [TaxId: 274] 99.89
d1q3qa2153 Thermosome, A-domain {Archaeon Thermococcus sp. ks 99.88
d1a6db2152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.88
d1assa_152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.87
d1sjpa1180 GroEL, E domain {Mycobacterium tuberculosis, GroEL 99.31
d1q3qa3107 Thermosome, I domain {Archaeon Thermococcus sp. ks 98.56
d1a6da3105 Thermosome, I domain {Archaeon Thermoplasma acidop 98.54
d1a6db3107 Thermosome, I domain {Archaeon Thermoplasma acidop 98.29
d1kida_193 GroEL, A domain {Escherichia coli [TaxId: 562]} 97.17
d1srva_145 GroEL, A domain {Thermus thermophilus [TaxId: 274] 96.9
d1sjpa2184 GroEL, A domain {Mycobacterium tuberculosis, GroEL 96.78
d1ioka2176 GroEL, A domain {Paracoccus denitrificans [TaxId: 96.72
d1sjpa389 GroEL, I domain {Mycobacterium tuberculosis, GroEL 93.76
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]

Probab=100.00  E-value=4.6e-34  Score=252.89  Aligned_cols=131  Identities=40%  Similarity=0.695  Sum_probs=127.2

Q ss_pred             CCcccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccchhHHHHHHHHHhhhH
Q 042442            9 DTRGEHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDRE   88 (283)
Q Consensus         9 ~~~~~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~   88 (283)
                      .++++.++|++++..|+.||+.+++++++||||+||+|||+++.|+++|||||+||+++++++||.++++++++++|+++
T Consensus         5 ~~~~~~~~g~~a~~~~~~a~~~ia~~v~~tlGP~g~~~~i~~~~g~~~iT~Dg~ti~~~~~~~~~~a~~~~~~a~~~~~~   84 (258)
T d1q3qa1           5 PEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDCATILDKIDLQHPAAKMMVEVAKTQDKE   84 (258)
T ss_dssp             CTTCEEEEHHHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECTTCCEEEESCHHHHHHHSCCCSHHHHHHHHHHHHHHHH
T ss_pred             CCCCccccCHHHHHHHHHHHHHHHHHHhcCcCCCCCeEEEECCCCCeEEeccHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhccc
Q 042442           89 VGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQ  140 (283)
Q Consensus        89 ~GDGttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~  140 (283)
                      +||||||+++|+++||+++.+++..|+||..|++||+.| +.+++.|++. +.
T Consensus        85 ~GDGttt~~vLa~~ll~~~~~li~~G~~p~~i~~g~~~a~~~~~~~l~~~-~~  136 (258)
T d1q3qa1          85 AGDGTTTAVVIAGELLRKAEELLDQNIHPSIITKGYALAAEKAQEILDEI-AI  136 (258)
T ss_dssp             TSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH-CE
T ss_pred             HccccchhHHhHHHHHhhhHHHHhcCCChhHHHHHHHHHHHHHHHHHHHh-hh
Confidence            999999999999999999999999999999999999999 9999999984 64
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure