Citrus Sinensis ID: 042445

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240------
Protein Sequence
MELINQDITREFSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRHAEKQ
Secondary Structure (PSIPRED)
cHHHHHHccccccEEEEccccccccHHHHHHHHHHHHHcccEEEEcccccccccccccccccccccccccEEEEcccccccccccccccHHcccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEcccccccccccHHHHHHHHHHHccEEEEccccccccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEEcccccccccccHHHHHHHHHHHHHcccEEEEHHHHHHHEccccccEEEEEEcccccEEEEEcccccEEccccEEEEEEEccccHHHcHHHHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEccccHHHccccccHHHHHHHHHHHccEEEEEcccccccccEEEEEcccHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MELINQDITRefsdfqvfhvgsgfsgsfvsPIAETAKKLGIMVIANEVyghlafgntpfvsmgvfgsivplltlgsiskrgivpglrlgwlvtsdpngilqdsgivDSIKIFLNissdpatfiqgavpQILEKTEEEFFSKIIDILRETADKCCdrlkeipcitcpkkpegsmFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRHAEKQ
Flexible Loop (DISEMBL)
MELINQDITREFSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIpcitcpkkpegsmFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVepsalenglgRMKAFYDRHAEKQ
Low Complexity Region (SEG)
MELINQDITREFSDFQvfhvgsgfsgsfvsPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRHAEKQ
Disordered region (IsUnstruct)
*******ITREFSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAF********
Disordered Region (DISOPRED)
MELINQDITREFSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRH****
Disordered Region (DISEMBL)
MELINQDITREFSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRHAEKQ
Disordered Region (DISPRO)
*ELINQDITREFSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRHA***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MELINQDITREFSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRHAEKQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	246	2.2.26 [Sep-21-2011]
Q9FN30	414	Probable aminotransferase	yes	no	0.918	0.545	0.592	2e-76
Q9LVY1	420	Tyrosine aminotransferase	no	no	0.918	0.538	0.588	3e-74
Q9ST03	551	Nicotianamine aminotransf	N/A	no	0.918	0.410	0.566	9e-72
Q9ST02	461	Nicotianamine aminotransf	N/A	no	0.918	0.490	0.544	1e-68
Q9SIV0	462	S-alkyl-thiohydroximate l	no	no	0.914	0.487	0.502	2e-65
Q9SK47	445	Probable aminotransferase	no	no	0.906	0.501	0.452	2e-60
Q67Y55	449	Probable aminotransferase	no	no	0.914	0.501	0.502	3e-60
Q9SUR6	422	Cystine lyase CORI3 OS=Ar	no	no	0.918	0.535	0.442	9e-52
Q8VYP2	424	Probable aminotransferase	no	no	0.906	0.525	0.448	1e-50
Q8QZR1	454	Tyrosine aminotransferase	yes	no	0.898	0.486	0.295	4e-28

>sp|Q9FN30|TAT2_ARATH Probable aminotransferase TAT2 OS=Arabidopsis thaliana GN=At5g53970 PE=2 SV=1

 Score =  285 bits (728), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 134/226 (59%), Positives = 173/226 (76%)

Query: 21  GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKR 80
           G+ +S   +  IAE+AKKLG +VIA+EVYGHLAFG+ PFV MGVFGSIVP+LTLGS+SKR
Sbjct: 185 GNVYSYQHLMKIAESAKKLGFLVIADEVYGHLAFGSKPFVPMGVFGSIVPVLTLGSLSKR 244

Query: 81  GIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFS 140
            IVPG RLGW VT+DP+G  +D  I++  K + +I   PATFIQ AVP ILE+T+E FF 
Sbjct: 245 WIVPGWRLGWFVTTDPSGSFKDPKIIERFKKYFDILGGPATFIQAAVPTILEQTDESFFK 304

Query: 141 KIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKE 200
           K ++ L+ ++D CCD +KEIPCI    +PEGSM +MVKLN SLLE ++ D++F  KLA+E
Sbjct: 305 KTLNSLKNSSDICCDWIKEIPCIDSSHRPEGSMAMMVKLNLSLLEDVSDDIDFCFKLARE 364

Query: 201 ESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRHAEKQ 246
           ESVI+LPG  VGLK+WLRITFA + +++E    R+K FY RHA+ Q
Sbjct: 365 ESVILLPGTAVGLKNWLRITFAADATSIEEAFKRIKCFYLRHAKTQ 410

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: -

>sp|Q9LVY1|TAT_ARATH Tyrosine aminotransferase OS=Arabidopsis thaliana GN=TAT PE=2 SV=1

 Score =  278 bits (711), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 133/226 (58%), Positives = 174/226 (76%)

Query: 21  GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKR 80
           G+ FS   +  IAETA KLGI+VIA+EVY H AFG+ PFVSM  F  +VP++ LG+ISKR
Sbjct: 194 GNVFSRQHLQKIAETACKLGILVIADEVYDHFAFGDKPFVSMAEFAELVPVIVLGAISKR 253

Query: 81  GIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFS 140
             VPG RLGW+VT DP+GI++DSG V ++   +N+S+DPATFIQGA+P I+  T+EEFFS
Sbjct: 254 WFVPGWRLGWMVTLDPHGIMKDSGFVQTLINVVNMSTDPATFIQGAMPDIIGNTKEEFFS 313

Query: 141 KIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKE 200
             ++++++ A+ C + L +IPCITCP KPEGSMF MVKLN+SLLE I+ D++F  KLAKE
Sbjct: 314 SKLEMVKKCAEICYEELMKIPCITCPCKPEGSMFTMVKLNFSLLEDISDDLDFCSKLAKE 373

Query: 201 ESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRHAEKQ 246
           ES+I+LPG  VGLK+WLRITFAVE   L  G  R+K F +RH++ Q
Sbjct: 374 ESMIILPGQAVGLKNWLRITFAVELELLIEGFSRLKNFTERHSKNQ 419

Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate. Can catalyze the reverse reaction, using L-glutamate in vitro. Can convert phenylalanine to phenylpyruvate and catalyze the reverse reaction in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 5

>sp|Q9ST03|NAATB_HORVU Nicotianamine aminotransferase B OS=Hordeum vulgare GN=naat-B PE=1 SV=2

 Score =  270 bits (689), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 128/226 (56%), Positives = 172/226 (76%)

Query: 21  GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKR 80
           GS +S   +S +AE AK+LGI+VIA+EVYG L  G+ PF+ MGVFG I P+L++GS+SK 
Sbjct: 321 GSVYSYDHLSKVAEVAKRLGILVIADEVYGKLVLGSAPFIPMGVFGHITPVLSIGSLSKS 380

Query: 81  GIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFS 140
            IVPG RLGW+   DP  ILQ++ I  SI  +LN+S+DPATFIQ A+PQILE T+E+FF 
Sbjct: 381 WIVPGWRLGWVAVYDPRKILQETKISTSITNYLNVSTDPATFIQAALPQILENTKEDFFK 440

Query: 141 KIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKE 200
            II +L+E+++ C  ++KE   ITCP KPEGSMFVMVKLN  LLE I+ D++F  KLAKE
Sbjct: 441 AIIGLLKESSEICYKQIKENKYITCPHKPEGSMFVMVKLNLHLLEEIDDDIDFCCKLAKE 500

Query: 201 ESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRHAEKQ 246
           ESVI+ PG  +G+ +W+RITFA  PS+L++GLGR+K+F  R+ ++ 
Sbjct: 501 ESVILCPGSVLGMANWVRITFACVPSSLQDGLGRIKSFCQRNKKRN 546

Involved in biosynthesis of mugineic acid family phytosiderophores.

Hordeum vulgare (taxid: 4513)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 8

EC: 0

>sp|Q9ST02|NAATA_HORVU Nicotianamine aminotransferase A OS=Hordeum vulgare GN=naat-A PE=1 SV=2

 Score =  259 bits (662), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 123/226 (54%), Positives = 170/226 (75%)

Query: 21  GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKR 80
           GS +S   ++ +AE A+KLGI+VIA+EVYG L  G+ PF+ MGVFG I P+L++GS+SK 
Sbjct: 231 GSVYSYDHLAKVAEVARKLGILVIADEVYGKLVLGSAPFIPMGVFGHIAPVLSIGSLSKS 290

Query: 81  GIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFS 140
            IVPG RLGW+   DP  IL+ + I  SI  +LN+S+DPATF+Q A+P+ILE T+ +FF 
Sbjct: 291 WIVPGWRLGWVAVYDPTKILEKTKISTSITNYLNVSTDPATFVQEALPKILENTKADFFK 350

Query: 141 KIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKE 200
           +II +L+E+++ C   +KE   ITCP KPEGSMFVMVKLN  LLE I+ D++F  KLAKE
Sbjct: 351 RIIGLLKESSEICYREIKENKYITCPHKPEGSMFVMVKLNLHLLEEIHDDIDFCCKLAKE 410

Query: 201 ESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRHAEKQ 246
           ESVI+ PG  +G+++W+RITFA  PS+L++GL R+K+F  R+ +K 
Sbjct: 411 ESVILCPGSVLGMENWVRITFACVPSSLQDGLERVKSFCQRNKKKN 456

Involved in biosynthesis of mugineic acid family phytosiderophores.

Hordeum vulgare (taxid: 4513)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 8

EC: 0

>sp|Q9SIV0|SUR1_ARATH S-alkyl-thiohydroximate lyase SUR1 OS=Arabidopsis thaliana GN=SUR1 PE=1 SV=1

 Score =  248 bits (634), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 113/225 (50%), Positives = 160/225 (71%)

Query: 21  GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKR 80
           G+ +S   +  +AETA+KLGIMVI++EVY    FG+ PFVSMG F SIVP+LTL  ISK 
Sbjct: 218 GNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLAGISKG 277

Query: 81  GIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFS 140
            +VPG ++GW+  +DP G+ + + ++ SIK  L+++ DPAT IQ A+P ILEK ++ FF+
Sbjct: 278 WVVPGWKIGWIALNDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALPAILEKADKNFFA 337

Query: 141 KIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKE 200
           K   IL+   D  CDRLK+IPC+ CPKKPE   +++ KL  SL++ I  D++F +KLA+E
Sbjct: 338 KKNKILKHNVDLVCDRLKDIPCVVCPKKPESCTYLLTKLELSLMDNIKDDIDFCVKLARE 397

Query: 201 ESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRHAEK 245
           E+++ LPG  +GLK+W+RIT  VE   LE+ L R+K F  RHA+K
Sbjct: 398 ENLVFLPGDALGLKNWMRITIGVEAHMLEDALERLKGFCTRHAKK 442

C-S lyase involved in glucosinolate biosynthesis. Converts S-(alkylacetohydroximoyl)-L-cysteine to thiohydroximate. Functions in auxin homeostasis. Probably required for glucosinolate activation in response to pathogens.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|Q9SK47|TAT3_ARATH Probable aminotransferase TAT3 OS=Arabidopsis thaliana GN=TAT3 PE=2 SV=1

 Score =  232 bits (591), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 101/223 (45%), Positives = 157/223 (70%)

Query: 21  GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKR 80
           G+ ++   ++ +AE A+KLGIM+I++EVY H+ +G+ PF+ MG F SI P++TLGSISK 
Sbjct: 202 GNVYTYDHLNKVAEMARKLGIMIISDEVYDHVVYGDKPFIPMGKFASIAPVITLGSISKG 261

Query: 81  GIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFS 140
            + PG R+GW+  +DPNGI   +G+V +I+ FL+++  P+  +Q A+P ILEKT +EFF 
Sbjct: 262 WVNPGWRVGWIAMNDPNGIFVSTGVVQAIEDFLDLTPQPSFILQEALPDILEKTPKEFFE 321

Query: 141 KIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKE 200
           K I  +R   +  C+RLK+IPC+ CPKKPE   ++ +KL+ S+L  I +D +F  KL  E
Sbjct: 322 KKIKAMRRNVELSCERLKDIPCLFCPKKPESCSYLWLKLDTSMLNNIKNDFDFCTKLVSE 381

Query: 201 ESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRHA 243
           ES+I++PG+ +G ++W+RI+   + S ++    R+K FYDRHA
Sbjct: 382 ESLILIPGVALGAENWVRISIGTDESVVQEIFDRLKGFYDRHA 424

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q67Y55|TAT1_ARATH Probable aminotransferase TAT1 OS=Arabidopsis thaliana GN=At4g28420 PE=2 SV=1

 Score =  231 bits (590), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 113/225 (50%), Positives = 156/225 (69%)

Query: 21  GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKR 80
           G+ +S   +  +AETAKKLGIMVI +EVY    FG+ PFV MG F SI P++TLG ISK 
Sbjct: 212 GNVYSYDHLKKVAETAKKLGIMVITDEVYCQTIFGDKPFVPMGEFSSITPVITLGGISKG 271

Query: 81  GIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFS 140
            IVPG R+GW+  +DP GIL+ +G+V SI+  L+I+ D  T +Q A+P+IL K  +E F+
Sbjct: 272 WIVPGWRIGWIALNDPRGILKSTGMVQSIQQNLDITPDATTIVQAALPEILGKANKELFA 331

Query: 141 KIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKE 200
           K   +L++  +  CDRLKEIPC+ C KKPE   +++ KL   LLE I  DM+F +KLAKE
Sbjct: 332 KKNSMLKQNVELVCDRLKEIPCLVCNKKPESCTYLLTKLKLPLLEDIEDDMDFCMKLAKE 391

Query: 201 ESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRHAEK 245
           E++++LPG+ +GLK+W+RIT  VE   LE+ L R+  F  RH +K
Sbjct: 392 ENLVLLPGVALGLKNWIRITIGVEAQMLEDALERLNGFCKRHLKK 436

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q9SUR6|CORI3_ARATH Cystine lyase CORI3 OS=Arabidopsis thaliana GN=CORI3 PE=1 SV=1

 Score =  203 bits (516), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 100/226 (44%), Positives = 147/226 (65%)

Query: 21  GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKR 80
           G+ +S + +  +AE AK+L IMV+++EV+    FG+ PFV MG F SIVP++TLGSISK 
Sbjct: 187 GNTYSEAHLKQLAELAKELKIMVVSDEVFRWTLFGSNPFVPMGKFSSIVPVVTLGSISKG 246

Query: 81  GIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFS 140
             VPG R GWL   D +G+ +++ ++ + + FL I+++P T IQ A+P ILEKT +EFF 
Sbjct: 247 WKVPGWRTGWLTLHDLDGVFRNTKVLQAAQDFLQINNNPPTVIQAAIPDILEKTPQEFFD 306

Query: 141 KIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKE 200
           K    L++  +    +LK IP +TC  KPE   F+  +L+ S    I  D +F  KLAKE
Sbjct: 307 KRQSFLKDKVEFGYSKLKYIPSLTCYMKPEACTFLWTELDLSSFVDIEDDQDFCNKLAKE 366

Query: 201 ESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRHAEKQ 246
           E+++VLPGI    K+WLR +  +E   LE+ L R+K+F DRH+ K+
Sbjct: 367 ENLVVLPGIAFSQKNWLRHSIDMETPVLEDALERLKSFCDRHSNKK 412

Possesses cystine lyase and tyrosine aminotransferase activities in vitro. May be required for the synthesis of homogentisate a precursor of tocopherols and plastoquinones.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|Q8VYP2|TAT4_ARATH Probable aminotransferase TAT4 OS=Arabidopsis thaliana GN=At4g23590 PE=2 SV=1

 Score =  199 bits (507), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 100/223 (44%), Positives = 142/223 (63%)

Query: 21  GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKR 80
           G+ ++ + +  +A  A++LGIMV+++EVY    FG+ PFV MG F SIVP++TLGSISK 
Sbjct: 187 GNYYTEAHLKQLATLARELGIMVVSDEVYRWSVFGSNPFVPMGKFSSIVPVITLGSISKG 246

Query: 81  GIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFS 140
            IVPG R GWL   D NG+ + + ++ + K FL I+S P T IQ A+P ILEKT ++FF 
Sbjct: 247 WIVPGWRTGWLALHDLNGVFRSTKVLKAAKEFLEITSKPPTVIQAAIPTILEKTPQDFFE 306

Query: 141 KIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKE 200
           K    L++  D    +LK IP +TC  KPE   F+  KL+      I  D +F  KLAKE
Sbjct: 307 KRGIFLKDKVDFGYSKLKNIPTLTCYMKPESCTFLWTKLDPLHFVDIEDDHDFCRKLAKE 366

Query: 201 ESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRHA 243
           E+++VLPGI  G  +WLR +  +E   LE+   R+K+F +RH+
Sbjct: 367 ENLVVLPGIAFGQNNWLRHSIDMETPRLEDAFERLKSFCERHS 409

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q8QZR1|ATTY_MOUSE Tyrosine aminotransferase OS=Mus musculus GN=Tat PE=1 SV=1

 Score =  125 bits (313), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 113/223 (50%), Gaps = 2/223 (0%)

Query: 20  VGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISK 79
            GS FS   +  I   A++  + ++A+E+YG + F +  +  M    + VP+L+ G ++K
Sbjct: 221 CGSVFSKRHLQKILAVAERQCVPILADEIYGDMVFSDCKYEPMATLSTNVPILSCGGLAK 280

Query: 80  RGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFF 139
           R +VPG RLGW++  D   I  +  I D +         P T +QGA+  IL++T +EF+
Sbjct: 281 RWLVPGWRLGWILIHDRRDIFGNE-IRDGLVKLSQRILGPCTIVQGALKSILQRTPQEFY 339

Query: 140 SKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAK 199
              +  L+  AD C   L  IP +  P +P G+M++MV +         +D+EF  +L  
Sbjct: 340 QDTLSFLKSNADLCYGALSAIPGLQ-PVRPSGAMYLMVGIEMEHFPEFENDVEFTERLIA 398

Query: 200 EESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRH 242
           E+SV  LP       ++ R+   V    +     R++ F ++H
Sbjct: 399 EQSVHCLPATCFEYPNFFRVVITVPEVMMLEACSRIQEFCEQH 441

Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate. Can catalyze the reverse reaction, using glutamic acid, with 2-oxoglutarate as cosubstrate (in vitro). Has no transaminase activity towards phenylalanine.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	246
224133454	418	aminotransferase family protein [Populus	0.918	0.540	0.725	7e-91
225446437	419	PREDICTED: tyrosine aminotransferase [Vi	0.918	0.539	0.703	2e-89
255553657	419	tyrosine aminotransferase, putative [Ric	0.918	0.539	0.707	1e-88
224100097	289	aminotransferase family protein [Populus	0.918	0.782	0.712	2e-88
224133450	417	aminotransferase family protein [Populus	0.914	0.539	0.68	2e-88
359485208	419	PREDICTED: LOW QUALITY PROTEIN: tyrosine	0.918	0.539	0.690	9e-88
325516250	422	tyrosine aminotransferase 2 [Solanum pen	0.918	0.535	0.659	1e-86
224133458	418	aminotransferase family protein [Populus	0.914	0.538	0.697	1e-86
225446431	419	PREDICTED: tyrosine aminotransferase [Vi	0.918	0.539	0.672	5e-85
355754553	386	PLP-dependent aminotransferase [Papaver	0.914	0.582	0.68	4e-84

>gi|224133454|ref|XP_002328046.1| aminotransferase family protein [Populus trichocarpa] gi|222837455|gb|EEE75834.1| aminotransferase family protein [Populus trichocarpa]

 Score =  339 bits (869), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 164/226 (72%), Positives = 195/226 (86%)

Query: 21  GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKR 80
           GS +S   +  IAETA+KLGIMVIA+EVYGHL FGN+PFV MGVFGSIVP+LTLGSISKR
Sbjct: 193 GSVYSYQHLQKIAETARKLGIMVIADEVYGHLTFGNSPFVPMGVFGSIVPVLTLGSISKR 252

Query: 81  GIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFS 140
            IVPG R+GWLVTSDPNGILQ+SG+V+SIK  LNISSDP TFIQGA+PQI++ T E+FF+
Sbjct: 253 WIVPGWRIGWLVTSDPNGILQESGVVESIKGCLNISSDPVTFIQGAIPQIIDNTTEDFFT 312

Query: 141 KIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKE 200
           KI +ILRE AD C +++++IPCIT P KPEGSMFVMVKLN S LEGI  DM+F LKLAKE
Sbjct: 313 KINNILREAADICYEKIQDIPCITLPHKPEGSMFVMVKLNLSSLEGIGDDMDFCLKLAKE 372

Query: 201 ESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRHAEKQ 246
           ESV++LPG  VG+K++LRITFA+EPSALE GL R+KAFY+RHA+ Q
Sbjct: 373 ESVMILPGTAVGMKNFLRITFAIEPSALEVGLERLKAFYERHAKIQ 418

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446437|ref|XP_002276551.1| PREDICTED: tyrosine aminotransferase [Vitis vinifera] gi|302143331|emb|CBI21892.3| unnamed protein product [Vitis vinifera]

 Score =  334 bits (857), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 159/226 (70%), Positives = 195/226 (86%)

Query: 21  GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKR 80
           GS F+   +  +AETA+ LGIMVI++EVYGHLAFG+ PFV MGVFGSIVP++T+GSISKR
Sbjct: 194 GSVFTYEHLKKVAETARNLGIMVISDEVYGHLAFGSKPFVPMGVFGSIVPIVTVGSISKR 253

Query: 81  GIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFS 140
            +VPG RLGWLVT+D NGIL  SG+V+SI   LNISSDPATFIQGA+P+ILEKT+E+FFS
Sbjct: 254 WVVPGWRLGWLVTNDLNGILHKSGVVESIISCLNISSDPATFIQGAIPEILEKTKEDFFS 313

Query: 141 KIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKE 200
             I ILRE AD   DR+K IPCITCP+KPEGSMFVMVKLN SLLE I+ D+EF +KL+KE
Sbjct: 314 NTISILRECADIIHDRIKGIPCITCPQKPEGSMFVMVKLNLSLLEDIDDDVEFCMKLSKE 373

Query: 201 ESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRHAEKQ 246
           ESVIVLPG++VG+K+WLR+TFA++P +LE+GLGR+KAFY RHA+K+
Sbjct: 374 ESVIVLPGVSVGMKNWLRVTFAIDPPSLEDGLGRIKAFYQRHAKKE 419

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553657|ref|XP_002517869.1| tyrosine aminotransferase, putative [Ricinus communis] gi|223542851|gb|EEF44387.1| tyrosine aminotransferase, putative [Ricinus communis]

 Score =  332 bits (850), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 160/226 (70%), Positives = 193/226 (85%)

Query: 21  GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKR 80
           G+ +S   +  IAETA+KLGI+VIA+EVY HL FG+TPFV MGVFGS+VP+LTLGSISKR
Sbjct: 194 GNVYSYEHLKKIAETARKLGILVIADEVYAHLTFGSTPFVPMGVFGSVVPVLTLGSISKR 253

Query: 81  GIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFS 140
            IVPG RLGWLV SDP GILQ++G+VDSI   LNISSDPATFIQGA+PQIL  T+++FF 
Sbjct: 254 WIVPGWRLGWLVLSDPKGILQETGVVDSITSCLNISSDPATFIQGAIPQILTNTKKDFFF 313

Query: 141 KIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKE 200
           KI ++L+E A+ C DR+++IPCITC +KPEGSMF+M KLN S L+GI  DM+F LKLAKE
Sbjct: 314 KINNLLQEAAELCYDRIQDIPCITCLRKPEGSMFLMAKLNLSSLKGIEDDMDFCLKLAKE 373

Query: 201 ESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRHAEKQ 246
           ESVIVLPGITVGLK+WLRITFA+E S LE GLGR++AFY+RHA+KQ
Sbjct: 374 ESVIVLPGITVGLKNWLRITFAIELSTLEVGLGRIRAFYERHAKKQ 419

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100097|ref|XP_002334409.1| aminotransferase family protein [Populus trichocarpa] gi|222872039|gb|EEF09170.1| aminotransferase family protein [Populus trichocarpa]

 Score =  331 bits (848), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 161/226 (71%), Positives = 190/226 (84%)

Query: 21  GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKR 80
           GS +S   +  +AETA+KLGIMVI++EVYGHL FG+ PFV MGVF S VP+LTLGSISKR
Sbjct: 64  GSVYSYQHLEKVAETARKLGIMVISDEVYGHLTFGSAPFVPMGVFASTVPVLTLGSISKR 123

Query: 81  GIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFS 140
            IVPG R+GWLVT+DPNGILQDSGIV SIK +LNISSDP TFIQ AVPQI+E T++ FFS
Sbjct: 124 WIVPGWRMGWLVTNDPNGILQDSGIVASIKDYLNISSDPPTFIQAAVPQIIENTKDGFFS 183

Query: 141 KIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKE 200
           KI +IL E AD C  ++++IPCI CP KPEGSMFVMVKLN +LLEGI+ D++F LKLAKE
Sbjct: 184 KINNILGEAADICYGKIQDIPCIICPHKPEGSMFVMVKLNLTLLEGIDDDVDFCLKLAKE 243

Query: 201 ESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRHAEKQ 246
           ESV+VLPGI VG+K+WLRITFA+EPSALE GL R+K F  RHA+KQ
Sbjct: 244 ESVMVLPGIAVGMKNWLRITFAIEPSALEVGLERLKVFCQRHAKKQ 289

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133450|ref|XP_002328045.1| aminotransferase family protein [Populus trichocarpa] gi|222837454|gb|EEE75833.1| aminotransferase family protein [Populus trichocarpa]

 Score =  330 bits (847), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 153/225 (68%), Positives = 187/225 (83%)

Query: 21  GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKR 80
           G+ FS   +  +AETA+KLGI VIA+EVYGH+AFG+ P+V MG FGSIVP+L+LGSISKR
Sbjct: 193 GNVFSYQHLKKVAETARKLGIFVIADEVYGHIAFGSNPYVPMGEFGSIVPVLSLGSISKR 252

Query: 81  GIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFS 140
            IVPG RLGW+ T DPNGIL+  GIVDSIK + NISS+PATF+Q A+PQI EKT+E+FFS
Sbjct: 253 WIVPGWRLGWIATCDPNGILKKYGIVDSIKSYFNISSNPATFVQAAIPQIFEKTKEDFFS 312

Query: 141 KIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKE 200
           K I+I+RE AD C ++ KEIPC+TCP KP+GSMF MVKLN SLLE I+ DM+F LKLA+E
Sbjct: 313 KTINIMREAADICYEKTKEIPCVTCPHKPDGSMFAMVKLNLSLLEDISDDMDFCLKLARE 372

Query: 201 ESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRHAEK 245
           ESVI+LPG+ VGLK+WLRITF++EP +LE GL RMKAF  RH+ K
Sbjct: 373 ESVIILPGVAVGLKNWLRITFSIEPQSLEQGLDRMKAFCQRHSRK 417

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485208|ref|XP_003633232.1| PREDICTED: LOW QUALITY PROTEIN: tyrosine aminotransferase-like [Vitis vinifera]

 Score =  328 bits (842), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 156/226 (69%), Positives = 189/226 (83%)

Query: 21  GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKR 80
           G+ F+   +  +AETA+ LGI+VI++EVY HLAFG  P+VSMG FGSI P++TLGSISKR
Sbjct: 194 GNIFTHEHLKKVAETARMLGILVISDEVYAHLAFGGNPYVSMGAFGSITPVITLGSISKR 253

Query: 81  GIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFS 140
            IVPG RLGWLVT+DPNGIL  SG+V+SI   LNISSDPATFIQGAVPQI+EKT ++F+ 
Sbjct: 254 WIVPGWRLGWLVTNDPNGILHKSGVVESIVSSLNISSDPATFIQGAVPQIIEKTTDDFYL 313

Query: 141 KIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKE 200
           KII ILRETA  C D +++IPC+TCP KPEGSMFVMVKLN SLLE I  D++F +KL+KE
Sbjct: 314 KIISILRETAGTCFDGIEDIPCLTCPHKPEGSMFVMVKLNLSLLEDIEDDIDFCMKLSKE 373

Query: 201 ESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRHAEKQ 246
           ESVIV PG  VG+K+WLRITFA+EP +LE+GLGR+KAFY RHA+KQ
Sbjct: 374 ESVIVFPGFAVGMKNWLRITFAIEPPSLEDGLGRIKAFYQRHAKKQ 419

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|325516250|gb|ADZ24703.1| tyrosine aminotransferase 2 [Solanum pennellii]

 Score =  325 bits (833), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 149/226 (65%), Positives = 192/226 (84%)

Query: 21  GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKR 80
           G+ +S   +  +AETA+KLGI+VI++EVY HLAFG+ PFV MG+FGSI P++TLGSISKR
Sbjct: 197 GNVYSEEHLKKVAETARKLGILVISDEVYAHLAFGSKPFVPMGIFGSIAPVVTLGSISKR 256

Query: 81  GIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFS 140
            IVPG RLGWLVT+DPNGIL++ G +DSI  +LNIS+DPATFIQGA+PQIL +T+++FFS
Sbjct: 257 WIVPGWRLGWLVTNDPNGILKEHGDIDSIMGYLNISTDPATFIQGAIPQILHETKDDFFS 316

Query: 141 KIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKE 200
           KI+++LRE AD C +R+K+IPCITCP KP+GSMF+MV+L+ +LLE I  D++F  KLAKE
Sbjct: 317 KIVNMLREDADICYERIKDIPCITCPSKPQGSMFLMVQLHLNLLEDIEDDLDFCAKLAKE 376

Query: 201 ESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRHAEKQ 246
           ES+I+LPG+ VGLK+WLRITFA EPS LE+G  R+ AFY RHA+KQ
Sbjct: 377 ESLIILPGVAVGLKNWLRITFACEPSYLEDGFQRLNAFYKRHAKKQ 422

Source: Solanum pennellii

Species: Solanum pennellii

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133458|ref|XP_002328047.1| aminotransferase family protein [Populus trichocarpa] gi|222837456|gb|EEE75835.1| aminotransferase family protein [Populus trichocarpa]

 Score =  325 bits (832), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 157/225 (69%), Positives = 187/225 (83%)

Query: 21  GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKR 80
           GS +S   +  +AETA+ LGIMVI++EVYGHL FG+ PFV MGVF S VP+LTLGSISKR
Sbjct: 194 GSVYSYQHLEKVAETARMLGIMVISDEVYGHLTFGSAPFVPMGVFASTVPVLTLGSISKR 253

Query: 81  GIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFS 140
            IVPG R+GWLVT+DPNGILQDSGIV SIK +LNISSDP TFIQ AVPQI+E T++ FFS
Sbjct: 254 WIVPGWRMGWLVTNDPNGILQDSGIVASIKDYLNISSDPPTFIQAAVPQIIENTKDGFFS 313

Query: 141 KIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKE 200
           KI +IL E AD C  ++++IPCI CP KPEGSMFVMVKLN +LLEGI+ D++F LKLAKE
Sbjct: 314 KINNILGEAADICYGKIQDIPCIICPHKPEGSMFVMVKLNLTLLEGIDDDVDFCLKLAKE 373

Query: 201 ESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRHAEK 245
           ESV+VLPGI VG+K+WLRITFA+EPSALE G  R+K F  RHA++
Sbjct: 374 ESVMVLPGIAVGMKNWLRITFAIEPSALEVGFERLKVFCQRHAKQ 418

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446431|ref|XP_002275047.1| PREDICTED: tyrosine aminotransferase [Vitis vinifera] gi|302143327|emb|CBI21888.3| unnamed protein product [Vitis vinifera]

 Score =  319 bits (818), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 152/226 (67%), Positives = 187/226 (82%)

Query: 21  GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKR 80
           G+ F+   +  +AETA+ LGI+VIA+EVYGHL FG+ P+V MGVFGSI P++TLGSISKR
Sbjct: 194 GNVFTHQHLKKVAETARMLGILVIADEVYGHLVFGSNPYVPMGVFGSITPVITLGSISKR 253

Query: 81  GIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFS 140
            IVPG RLGWLVT+DPNGIL  SG+V++I   LNI +DPATFI GAVPQI+EKT ++FFS
Sbjct: 254 WIVPGWRLGWLVTNDPNGILCKSGVVETIVSSLNICTDPATFIHGAVPQIIEKTTDDFFS 313

Query: 141 KIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKE 200
           +II +LR+TAD C D L +IPCITCP KPEG+M VMV LN SLLE I  DM+F +KL+KE
Sbjct: 314 RIIGLLRKTADICFDGLADIPCITCPHKPEGAMSVMVNLNVSLLEDIEDDMDFCVKLSKE 373

Query: 201 ESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRHAEKQ 246
           ESVI+LPG TVG+++WLRITFA EP +LE+GLGR+KAF  RHA+KQ
Sbjct: 374 ESVIILPGFTVGMENWLRITFATEPPSLEDGLGRIKAFCQRHAKKQ 419

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|355754553|gb|AET06144.1| PLP-dependent aminotransferase [Papaver somniferum]

 Score =  317 bits (811), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 153/225 (68%), Positives = 188/225 (83%)

Query: 21  GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKR 80
           GS ++   +  IAETAKKLGI+VI++EVYGHL F + PFV MGVFGSIVP+LTLGSISKR
Sbjct: 162 GSVYTYEHLKKIAETAKKLGILVISDEVYGHLTFASNPFVPMGVFGSIVPVLTLGSISKR 221

Query: 81  GIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFS 140
            IVPG RLGWLVTSDPNGIL+++ +VDSI   LNIS DPATFIQ A+PQI+EKT ++FFS
Sbjct: 222 WIVPGWRLGWLVTSDPNGILKETKVVDSIISCLNISGDPATFIQAAIPQIIEKTTDDFFS 281

Query: 141 KIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKE 200
           K+I ILR++A+   D++KEI CITCP KPEGSMFVMVK N +L+E I  DMEF  KLAKE
Sbjct: 282 KVITILRKSAEIIYDQIKEIDCITCPHKPEGSMFVMVKFNSTLMEDIKDDMEFCFKLAKE 341

Query: 201 ESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRHAEK 245
           ES+I+LPG  VG+K+WLRITFAVEP++L++GL R+KAF  R+A+K
Sbjct: 342 ESLIILPGTAVGMKNWLRITFAVEPTSLQDGLLRLKAFCQRYAKK 386

Source: Papaver somniferum

Species: Papaver somniferum

Genus: Papaver

Family: Papaveraceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	246
TAIR|locus:2154714	414	TAT7 "tyrosine aminotransferas	0.873	0.519	0.613	1.3e-68
TAIR|locus:2158926	420	AT5G36160 [Arabidopsis thalian	0.873	0.511	0.604	1.5e-67
UNIPROTKB|Q9ST03	551	naat-B "Nicotianamine aminotra	0.869	0.388	0.579	6e-64
UNIPROTKB|Q9ST02	461	naat-A "Nicotianamine aminotra	0.869	0.464	0.560	1e-61
TAIR|locus:2046056	462	SUR1 "SUPERROOT 1" [Arabidopsi	0.869	0.463	0.518	2.2e-59
TAIR|locus:2121407	449	AT4G28420 [Arabidopsis thalian	0.869	0.476	0.518	1.1e-57
TAIR|locus:2121382	447	AT4G28410 [Arabidopsis thalian	0.873	0.480	0.502	1.2e-56
TAIR|locus:2047441	445	TAT3 "tyrosine aminotransferas	0.861	0.476	0.471	6.8e-56
TAIR|locus:2128459	422	CORI3 "CORONATINE INDUCED 1" [	0.873	0.509	0.455	1.4e-46
TAIR|locus:2128434	424	AT4G23590 [Arabidopsis thalian	0.861	0.5	0.466	3e-46

TAIR|locus:2154714 TAT7 "tyrosine aminotransferase 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 696 (250.1 bits), Expect = 1.3e-68, P = 1.3e-68
 Identities = 132/215 (61%), Positives = 168/215 (78%)

Query:    32 IAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91
             IAE+AKKLG +VIA+EVYGHLAFG+ PFV MGVFGSIVP+LTLGS+SKR IVPG RLGW 
Sbjct:   196 IAESAKKLGFLVIADEVYGHLAFGSKPFVPMGVFGSIVPVLTLGSLSKRWIVPGWRLGWF 255

Query:    92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETAD 151
             VT+DP+G  +D  I++  K + +I   PATFIQ AVP ILE+T+E FF K ++ L+ ++D
Sbjct:   256 VTTDPSGSFKDPKIIERFKKYFDILGGPATFIQAAVPTILEQTDESFFKKTLNSLKNSSD 315

Query:   152 KCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITV 211
              CCD +KEIPCI    +PEGSM +MVKLN SLLE ++ D++F  KLA+EESVI+LPG  V
Sbjct:   316 ICCDWIKEIPCIDSSHRPEGSMAMMVKLNLSLLEDVSDDIDFCFKLAREESVILLPGTAV 375

Query:   212 GLKDWLRITFAVEPSALENGLGRMKAFYDRHAEKQ 246
             GLK+WLRITFA + +++E    R+K FY RHA+ Q
Sbjct:   376 GLKNWLRITFAADATSIEEAFKRIKCFYLRHAKTQ 410

GO:0005737 "cytoplasm" evidence=ISM

GO:0008483 "transaminase activity" evidence=ISS

GO:0009058 "biosynthetic process" evidence=ISS

GO:0004838 "L-tyrosine:2-oxoglutarate aminotransferase activity" evidence=IGI;IMP;IDA;TAS

GO:0010189 "vitamin E biosynthetic process" evidence=IEP;IMP

TAIR|locus:2158926 AT5G36160 [Arabidopsis thaliana (taxid:3702)]

 Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
 Identities = 130/215 (60%), Positives = 169/215 (78%)

Query:    32 IAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91
             IAETA KLGI+VIA+EVY H AFG+ PFVSM  F  +VP++ LG+ISKR  VPG RLGW+
Sbjct:   205 IAETACKLGILVIADEVYDHFAFGDKPFVSMAEFAELVPVIVLGAISKRWFVPGWRLGWM 264

Query:    92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETAD 151
             VT DP+GI++DSG V ++   +N+S+DPATFIQGA+P I+  T+EEFFS  ++++++ A+
Sbjct:   265 VTLDPHGIMKDSGFVQTLINVVNMSTDPATFIQGAMPDIIGNTKEEFFSSKLEMVKKCAE 324

Query:   152 KCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITV 211
              C + L +IPCITCP KPEGSMF MVKLN+SLLE I+ D++F  KLAKEES+I+LPG  V
Sbjct:   325 ICYEELMKIPCITCPCKPEGSMFTMVKLNFSLLEDISDDLDFCSKLAKEESMIILPGQAV 384

Query:   212 GLKDWLRITFAVEPSALENGLGRMKAFYDRHAEKQ 246
             GLK+WLRITFAVE   L  G  R+K F +RH++ Q
Sbjct:   385 GLKNWLRITFAVELELLIEGFSRLKNFTERHSKNQ 419

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006520 "cellular amino acid metabolic process" evidence=IEA;IDA

GO:0008483 "transaminase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016847 "1-aminocyclopropane-1-carboxylate synthase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0042218 "1-aminocyclopropane-1-carboxylate biosynthetic process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0004838 "L-tyrosine:2-oxoglutarate aminotransferase activity" evidence=IDA

GO:0006559 "L-phenylalanine catabolic process" evidence=IGI

GO:0006572 "tyrosine catabolic process" evidence=IGI

UNIPROTKB|Q9ST03 naat-B "Nicotianamine aminotransferase B" [Hordeum vulgare (taxid:4513)]

 Score = 652 (234.6 bits), Expect = 6.0e-64, P = 6.0e-64
 Identities = 124/214 (57%), Positives = 166/214 (77%)

Query:    32 IAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91
             +AE AK+LGI+VIA+EVYG L  G+ PF+ MGVFG I P+L++GS+SK  IVPG RLGW+
Sbjct:   332 VAEVAKRLGILVIADEVYGKLVLGSAPFIPMGVFGHITPVLSIGSLSKSWIVPGWRLGWV 391

Query:    92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETAD 151
                DP  ILQ++ I  SI  +LN+S+DPATFIQ A+PQILE T+E+FF  II +L+E+++
Sbjct:   392 AVYDPRKILQETKISTSITNYLNVSTDPATFIQAALPQILENTKEDFFKAIIGLLKESSE 451

Query:   152 KCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITV 211
              C  ++KE   ITCP KPEGSMFVMVKLN  LLE I+ D++F  KLAKEESVI+ PG  +
Sbjct:   452 ICYKQIKENKYITCPHKPEGSMFVMVKLNLHLLEEIDDDIDFCCKLAKEESVILCPGSVL 511

Query:   212 GLKDWLRITFAVEPSALENGLGRMKAFYDRHAEK 245
             G+ +W+RITFA  PS+L++GLGR+K+F  R+ ++
Sbjct:   512 GMANWVRITFACVPSSLQDGLGRIKSFCQRNKKR 545

GO:0033855 "nicotianamine aminotransferase activity" evidence=IDA

UNIPROTKB|Q9ST02 naat-A "Nicotianamine aminotransferase A" [Hordeum vulgare (taxid:4513)]

 Score = 631 (227.2 bits), Expect = 1.0e-61, P = 1.0e-61
 Identities = 120/214 (56%), Positives = 164/214 (76%)

Query:    32 IAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91
             +AE A+KLGI+VIA+EVYG L  G+ PF+ MGVFG I P+L++GS+SK  IVPG RLGW+
Sbjct:   242 VAEVARKLGILVIADEVYGKLVLGSAPFIPMGVFGHIAPVLSIGSLSKSWIVPGWRLGWV 301

Query:    92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETAD 151
                DP  IL+ + I  SI  +LN+S+DPATF+Q A+P+ILE T+ +FF +II +L+E+++
Sbjct:   302 AVYDPTKILEKTKISTSITNYLNVSTDPATFVQEALPKILENTKADFFKRIIGLLKESSE 361

Query:   152 KCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITV 211
              C   +KE   ITCP KPEGSMFVMVKLN  LLE I+ D++F  KLAKEESVI+ PG  +
Sbjct:   362 ICYREIKENKYITCPHKPEGSMFVMVKLNLHLLEEIHDDIDFCCKLAKEESVILCPGSVL 421

Query:   212 GLKDWLRITFAVEPSALENGLGRMKAFYDRHAEK 245
             G+++W+RITFA  PS+L++GL R+K+F  R+ +K
Sbjct:   422 GMENWVRITFACVPSSLQDGLERVKSFCQRNKKK 455

GO:0033855 "nicotianamine aminotransferase activity" evidence=IDA

TAIR|locus:2046056 SUR1 "SUPERROOT 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 609 (219.4 bits), Expect = 2.2e-59, P = 2.2e-59
 Identities = 111/214 (51%), Positives = 155/214 (72%)

Query:    32 IAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91
             +AETA+KLGIMVI++EVY    FG+ PFVSMG F SIVP+LTL  ISK  +VPG ++GW+
Sbjct:   229 VAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLAGISKGWVVPGWKIGWI 288

Query:    92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETAD 151
               +DP G+ + + ++ SIK  L+++ DPAT IQ A+P ILEK ++ FF+K   IL+   D
Sbjct:   289 ALNDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALPAILEKADKNFFAKKNKILKHNVD 348

Query:   152 KCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITV 211
               CDRLK+IPC+ CPKKPE   +++ KL  SL++ I  D++F +KLA+EE+++ LPG  +
Sbjct:   349 LVCDRLKDIPCVVCPKKPESCTYLLTKLELSLMDNIKDDIDFCVKLAREENLVFLPGDAL 408

Query:   212 GLKDWLRITFAVEPSALENGLGRMKAFYDRHAEK 245
             GLK+W+RIT  VE   LE+ L R+K F  RHA+K
Sbjct:   409 GLKNWMRITIGVEAHMLEDALERLKGFCTRHAKK 442

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006520 "cellular amino acid metabolic process" evidence=IEA;RCA

GO:0008483 "transaminase activity" evidence=IEA;ISS

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016847 "1-aminocyclopropane-1-carboxylate synthase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0042218 "1-aminocyclopropane-1-carboxylate biosynthetic process" evidence=IEA

GO:0016846 "carbon-sulfur lyase activity" evidence=IDA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA;IMP

GO:0080108 "S-alkylthiohydroximate lyase activity" evidence=IMP

GO:0001560 "regulation of cell growth by extracellular stimulus" evidence=IMP

GO:0048830 "adventitious root development" evidence=TAS

GO:0016020 "membrane" evidence=IDA

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=IMP;RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0019760 "glucosinolate metabolic process" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

TAIR|locus:2121407 AT4G28420 [Arabidopsis thaliana (taxid:3702)]

 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 111/214 (51%), Positives = 151/214 (70%)

Query:    32 IAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91
             +AETAKKLGIMVI +EVY    FG+ PFV MG F SI P++TLG ISK  IVPG R+GW+
Sbjct:   223 VAETAKKLGIMVITDEVYCQTIFGDKPFVPMGEFSSITPVITLGGISKGWIVPGWRIGWI 282

Query:    92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETAD 151
               +DP GIL+ +G+V SI+  L+I+ D  T +Q A+P+IL K  +E F+K   +L++  +
Sbjct:   283 ALNDPRGILKSTGMVQSIQQNLDITPDATTIVQAALPEILGKANKELFAKKNSMLKQNVE 342

Query:   152 KCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITV 211
               CDRLKEIPC+ C KKPE   +++ KL   LLE I  DM+F +KLAKEE++++LPG+ +
Sbjct:   343 LVCDRLKEIPCLVCNKKPESCTYLLTKLKLPLLEDIEDDMDFCMKLAKEENLVLLPGVAL 402

Query:   212 GLKDWLRITFAVEPSALENGLGRMKAFYDRHAEK 245
             GLK+W+RIT  VE   LE+ L R+  F  RH +K
Sbjct:   403 GLKNWIRITIGVEAQMLEDALERLNGFCKRHLKK 436

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA;ISS

GO:0009058 "biosynthetic process" evidence=IEA;ISS

GO:0016740 "transferase activity" evidence=IEA

GO:0016847 "1-aminocyclopropane-1-carboxylate synthase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0042218 "1-aminocyclopropane-1-carboxylate biosynthetic process" evidence=IEA

TAIR|locus:2121382 AT4G28410 [Arabidopsis thaliana (taxid:3702)]

 Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
 Identities = 108/215 (50%), Positives = 153/215 (71%)

Query:    32 IAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91
             +AE A+KLGIMVI++EVY    +G   FV MG+F SI P++TLGSISK  +VPG R+GW+
Sbjct:   231 VAEVARKLGIMVISDEVYNQTIYGENKFVPMGIFSSITPVVTLGSISKGWLVPGWRIGWI 290

Query:    92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETAD 151
               +DP  + + + +V+SIK  L+IS DP+T +Q A+P ILEKT++EFF K   IL +  D
Sbjct:   291 AMNDPKNVFKTTRVVESIKEHLDISPDPSTILQFALPNILEKTKKEFFEKNNSILSQNVD 350

Query:   152 KCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITV 211
                D LK+IPC+TCPKKPE   +++ KL+ SLLE I +D +F +KLA+EE+++ LPG  +
Sbjct:   351 FAFDALKDIPCLTCPKKPESCTYLVTKLDLSLLEDITNDFDFCMKLAQEENLVFLPGEVL 410

Query:   212 GLKDWLRITFAVEPSALENGLGRMKAFYDRHAEKQ 246
             GLK+W+R +  VE S LE+   R+K F+ RH + Q
Sbjct:   411 GLKNWVRFSIGVERSMLEDAFMRLKGFFARHTKTQ 445

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA;ISS

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016847 "1-aminocyclopropane-1-carboxylate synthase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0042218 "1-aminocyclopropane-1-carboxylate biosynthetic process" evidence=IEA

TAIR|locus:2047441 TAT3 "tyrosine aminotransferase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
 Identities = 100/212 (47%), Positives = 151/212 (71%)

Query:    32 IAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91
             +AE A+KLGIM+I++EVY H+ +G+ PF+ MG F SI P++TLGSISK  + PG R+GW+
Sbjct:   213 VAEMARKLGIMIISDEVYDHVVYGDKPFIPMGKFASIAPVITLGSISKGWVNPGWRVGWI 272

Query:    92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETAD 151
               +DPNGI   +G+V +I+ FL+++  P+  +Q A+P ILEKT +EFF K I  +R   +
Sbjct:   273 AMNDPNGIFVSTGVVQAIEDFLDLTPQPSFILQEALPDILEKTPKEFFEKKIKAMRRNVE 332

Query:   152 KCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITV 211
               C+RLK+IPC+ CPKKPE   ++ +KL+ S+L  I +D +F  KL  EES+I++PG+ +
Sbjct:   333 LSCERLKDIPCLFCPKKPESCSYLWLKLDTSMLNNIKNDFDFCTKLVSEESLILIPGVAL 392

Query:   212 GLKDWLRITFAVEPSALENGLGRMKAFYDRHA 243
             G ++W+RI+   + S ++    R+K FYDRHA
Sbjct:   393 GAENWVRISIGTDESVVQEIFDRLKGFYDRHA 424

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA;ISS

GO:0009058 "biosynthetic process" evidence=IEA;ISS

GO:0016740 "transferase activity" evidence=IEA

GO:0016847 "1-aminocyclopropane-1-carboxylate synthase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0042218 "1-aminocyclopropane-1-carboxylate biosynthetic process" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0004838 "L-tyrosine:2-oxoglutarate aminotransferase activity" evidence=ISS

TAIR|locus:2128459 CORI3 "CORONATINE INDUCED 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 98/215 (45%), Positives = 141/215 (65%)

Query:    32 IAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91
             +AE AK+L IMV+++EV+    FG+ PFV MG F SIVP++TLGSISK   VPG R GWL
Sbjct:   198 LAELAKELKIMVVSDEVFRWTLFGSNPFVPMGKFSSIVPVVTLGSISKGWKVPGWRTGWL 257

Query:    92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETAD 151
                D +G+ +++ ++ + + FL I+++P T IQ A+P ILEKT +EFF K    L++  +
Sbjct:   258 TLHDLDGVFRNTKVLQAAQDFLQINNNPPTVIQAAIPDILEKTPQEFFDKRQSFLKDKVE 317

Query:   152 KCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITV 211
                 +LK IP +TC  KPE   F+  +L+ S    I  D +F  KLAKEE+++VLPGI  
Sbjct:   318 FGYSKLKYIPSLTCYMKPEACTFLWTELDLSSFVDIEDDQDFCNKLAKEENLVVLPGIAF 377

Query:   212 GLKDWLRITFAVEPSALENGLGRMKAFYDRHAEKQ 246
               K+WLR +  +E   LE+ L R+K+F DRH+ K+
Sbjct:   378 SQKNWLRHSIDMETPVLEDALERLKSFCDRHSNKK 412

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006520 "cellular amino acid metabolic process" evidence=IEA;IEP

GO:0008483 "transaminase activity" evidence=IEA;ISS;NAS

GO:0009058 "biosynthetic process" evidence=IEA;ISS

GO:0016740 "transferase activity" evidence=IEA

GO:0016847 "1-aminocyclopropane-1-carboxylate synthase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0042218 "1-aminocyclopropane-1-carboxylate biosynthetic process" evidence=IEA

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0010188 "response to microbial phytotoxin" evidence=IEP

GO:0004021 "L-alanine:2-oxoglutarate aminotransferase activity" evidence=IDA

GO:0004069 "L-aspartate:2-oxoglutarate aminotransferase activity" evidence=IDA

GO:0004121 "cystathionine beta-lyase activity" evidence=IDA

GO:0004838 "L-tyrosine:2-oxoglutarate aminotransferase activity" evidence=IDA

GO:0042538 "hyperosmotic salinity response" evidence=TAS

GO:0050362 "L-tryptophan:2-oxoglutarate aminotransferase activity" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP

GO:0048046 "apoplast" evidence=IDA

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

TAIR|locus:2128434 AT4G23590 [Arabidopsis thaliana (taxid:3702)]

 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 99/212 (46%), Positives = 136/212 (64%)

Query:    32 IAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91
             +A  A++LGIMV+++EVY    FG+ PFV MG F SIVP++TLGSISK  IVPG R GWL
Sbjct:   198 LATLARELGIMVVSDEVYRWSVFGSNPFVPMGKFSSIVPVITLGSISKGWIVPGWRTGWL 257

Query:    92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETAD 151
                D NG+ + + ++ + K FL I+S P T IQ A+P ILEKT ++FF K    L++  D
Sbjct:   258 ALHDLNGVFRSTKVLKAAKEFLEITSKPPTVIQAAIPTILEKTPQDFFEKRGIFLKDKVD 317

Query:   152 KCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITV 211
                 +LK IP +TC  KPE   F+  KL+      I  D +F  KLAKEE+++VLPGI  
Sbjct:   318 FGYSKLKNIPTLTCYMKPESCTFLWTKLDPLHFVDIEDDHDFCRKLAKEENLVVLPGIAF 377

Query:   212 GLKDWLRITFAVEPSALENGLGRMKAFYDRHA 243
             G  +WLR +  +E   LE+   R+K+F +RH+
Sbjct:   378 GQNNWLRHSIDMETPRLEDAFERLKSFCERHS 409

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA;ISS

GO:0009058 "biosynthetic process" evidence=IEA;ISS

GO:0016740 "transferase activity" evidence=IEA

GO:0016847 "1-aminocyclopropane-1-carboxylate synthase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0042218 "1-aminocyclopropane-1-carboxylate biosynthetic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.6.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AMT1	aminotransferase family protein (418 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	fgenesh4_pm.C_LG_II000277	4-hydroxyphenylpyruvate dioxygenase (EC-1.13.11.27) (444 aa)						•			0.910
	eugene3.00051120	4-hydroxyphenylpyruvate dioxygenase (343 aa)						•			0.903
	gw1.XII.71.1	hypothetical protein (321 aa)						•			0.899
	gw1.X.450.1	hypothetical protein (323 aa)						•			0.899
	gw1.VIII.466.1	hypothetical protein (305 aa)						•			0.899
	gw1.VII.698.1	hypothetical protein (302 aa)						•			0.899
	gw1.IV.2899.1	hypothetical protein (306 aa)						•			0.899
	gw1.III.1437.1	hypothetical protein (291 aa)						•			0.899
	gw1.II.2473.1	hypothetical protein (303 aa)						•			0.899
	gw1.28.655.1	annotation not avaliable (78 aa)						•			0.899

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	246
PLN00145	430	PLN00145, PLN00145, tyrosine/nicotianamine aminotr	1e-129
PLN00143	409	PLN00143, PLN00143, tyrosine/nicotianamine aminotr	1e-115
PLN02656	409	PLN02656, PLN02656, tyrosine transaminase	1e-115
TIGR01265	403	TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine	1e-101
PLN02187	462	PLN02187, PLN02187, rooty/superroot1	2e-77
TIGR01264	401	TIGR01264, tyr_amTase_E, tyrosine aminotransferase	1e-48
PTZ00433	412	PTZ00433, PTZ00433, tyrosine aminotransferase; Pro	1e-46
COG0436	393	COG0436, COG0436, Aspartate/tyrosine/aromatic amin	1e-33
cd00609	350	cd00609, AAT_like, Aspartate aminotransferase fami	6e-33
PRK05764	393	PRK05764, PRK05764, aspartate aminotransferase; Pr	5e-26
pfam00155	357	pfam00155, Aminotran_1_2, Aminotransferase class I	1e-19
PRK06108	382	PRK06108, PRK06108, aspartate aminotransferase; Pr	3e-15
PRK08363	398	PRK08363, PRK08363, alanine aminotransferase; Vali	3e-14
COG1167	459	COG1167, ARO8, Transcriptional regulators containi	3e-13
PRK06348	384	PRK06348, PRK06348, aspartate aminotransferase; Pr	8e-13
PRK06107	402	PRK06107, PRK06107, aspartate aminotransferase; Pr	3e-12
PRK07568	397	PRK07568, PRK07568, aspartate aminotransferase; Pr	6e-12
PRK09265	404	PRK09265, PRK09265, aminotransferase AlaT; Validat	6e-12
PRK07324	373	PRK07324, PRK07324, transaminase; Validated	3e-11
PRK13355	517	PRK13355, PRK13355, bifunctional HTH-domain contai	1e-10
PRK08361	391	PRK08361, PRK08361, aspartate aminotransferase; Pr	1e-10
TIGR03540	383	TIGR03540, DapC_direct, LL-diaminopimelate aminotr	1e-08
PRK05839	374	PRK05839, PRK05839, hypothetical protein; Provisio	9e-08
PRK05957	389	PRK05957, PRK05957, aspartate aminotransferase; Pr	6e-07
PRK06836	394	PRK06836, PRK06836, aspartate aminotransferase; Pr	7e-07
PRK07309	391	PRK07309, PRK07309, aromatic amino acid aminotrans	1e-06
PLN00175	413	PLN00175, PLN00175, aminotransferase family protei	3e-05
PRK07681	399	PRK07681, PRK07681, aspartate aminotransferase; Pr	3e-05
PTZ00377	481	PTZ00377, PTZ00377, alanine aminotransferase; Prov	4e-05
PRK07777	387	PRK07777, PRK07777, aminotransferase; Validated	6e-05
PRK07682	378	PRK07682, PRK07682, hypothetical protein; Validate	8e-05
PRK09276	385	PRK09276, PRK09276, LL-diaminopimelate aminotransf	8e-05
TIGR03947	359	TIGR03947, viomycin_VioD, capreomycidine synthase	7e-04
PRK08175	395	PRK08175, PRK08175, aminotransferase; Validated	8e-04
PRK06855	433	PRK06855, PRK06855, aminotransferase; Validated	0.002
PRK12414	384	PRK12414, PRK12414, putative aminotransferase; Pro	0.003
PRK06290	410	PRK06290, PRK06290, aspartate aminotransferase; Pr	0.003
COG1168	388	COG1168, MalY, Bifunctional PLP-dependent enzyme w	0.003
PRK08056	356	PRK08056, PRK08056, threonine-phosphate decarboxyl	0.004

>gnl|CDD|215074 PLN00145, PLN00145, tyrosine/nicotianamine aminotransferase; Provisional

 Score =  372 bits (957), Expect = e-129
 Identities = 144/225 (64%), Positives = 186/225 (82%)

Query: 21  GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKR 80
           GS +S   ++ IAETA+KLGI+VIA+EVY HL FG+ PFV MGVFG + P+LTLGSISKR
Sbjct: 204 GSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVAPVLTLGSISKR 263

Query: 81  GIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFS 140
            +VPG RLGW+ T DPNGIL+++ +VDSI+ +LNIS+DPATF+QGA+PQI+  T+EEFF+
Sbjct: 264 WVVPGWRLGWIATCDPNGILKETKVVDSIRNYLNISTDPATFVQGAIPQIIANTKEEFFT 323

Query: 141 KIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKE 200
           K + +L+ETAD C +++KEI CITCP KPEGSMFVMVKL+ S L GI  DM+F  KLAKE
Sbjct: 324 KTLGLLKETADICYEKIKEIKCITCPHKPEGSMFVMVKLDLSCLSGIKDDMDFCCKLAKE 383

Query: 201 ESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRHAEK 245
           ESV+VLPG  +G+K+WLRITFA++P +LE+GL R+K+F  RHA+ 
Sbjct: 384 ESVVVLPGSALGMKNWLRITFAIDPPSLEDGLERLKSFCLRHAKL 428

Length = 430

>gnl|CDD|165711 PLN00143, PLN00143, tyrosine/nicotianamine aminotransferase; Provisional

 Score =  336 bits (862), Expect = e-115
 Identities = 147/225 (65%), Positives = 180/225 (80%)

Query: 21  GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKR 80
           GS +S   ++ IAETA+KLGI+VIA+EVYGH+ FG+ PFV MG+F SIVP++TLGSISKR
Sbjct: 184 GSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFASIVPVITLGSISKR 243

Query: 81  GIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFS 140
            ++PG  LGWLVT DP+G+LQ   I DSIK  LN +  P TFIQ A+P+ILEKT E+FFS
Sbjct: 244 WMIPGWGLGWLVTCDPSGLLQICEIADSIKKALNPAPFPPTFIQAAIPEILEKTTEDFFS 303

Query: 141 KIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKE 200
           K I+ILR     C D+LKEIPCI CP+K EG+ F +VKLN  LLE I  DMEF LKLAKE
Sbjct: 304 KTINILRAALAFCYDKLKEIPCIMCPQKAEGAFFALVKLNLLLLEDIEDDMEFCLKLAKE 363

Query: 201 ESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRHAEK 245
           ES+I+LPG+TVGLK+WLRITFAVE S+LE+GLGR+K+F  RHA+K
Sbjct: 364 ESLIILPGVTVGLKNWLRITFAVEQSSLEDGLGRLKSFCGRHAKK 408

Length = 409

>gnl|CDD|178262 PLN02656, PLN02656, tyrosine transaminase

 Score =  336 bits (862), Expect = e-115
 Identities = 149/226 (65%), Positives = 184/226 (81%)

Query: 21  GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKR 80
           G+ +S   +  IAETA+KL I+VIA+EVYGHLAFG+ PFV MGVFGSIVP+LTLGS+SKR
Sbjct: 183 GNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLGSLSKR 242

Query: 81  GIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFS 140
            IVPG RLGW VT+DP+G  +D  IV+ IK + +I   PATFIQ AVP ILE+T+E FF 
Sbjct: 243 WIVPGWRLGWFVTTDPSGSFRDPKIVERIKKYFDILGGPATFIQAAVPTILEQTDESFFK 302

Query: 141 KIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKE 200
           K I+IL++++D CCDR+KEIPCITCP KPEGSM VMVKLN SLLE I+ D++F  KLA+E
Sbjct: 303 KTINILKQSSDICCDRIKEIPCITCPHKPEGSMAVMVKLNLSLLEDISDDIDFCFKLARE 362

Query: 201 ESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRHAEKQ 246
           ESVI+LPG  VGLK+WLRITFA +PS+LE  LGR+K+FY RH++ Q
Sbjct: 363 ESVIILPGTAVGLKNWLRITFAADPSSLEEALGRIKSFYLRHSKTQ 408

Length = 409

>gnl|CDD|188123 TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine family aminotransferase

 Score =  300 bits (769), Expect = e-101
 Identities = 113/223 (50%), Positives = 151/223 (67%), Gaps = 2/223 (0%)

Query: 21  GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKR 80
           GS FS   +  IAE A+KLGI +IA+E+YGH+ FG+ PF+ M  F SIVP+L+LG ISKR
Sbjct: 183 GSVFSRDHLQKIAEVAEKLGIPIIADEIYGHMVFGDAPFIPMASFASIVPVLSLGGISKR 242

Query: 81  GIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFS 140
            +VPG RLGW++  DP+GI +D+ ++  +K  L     PAT +QGA+P ILE T +EFF 
Sbjct: 243 WVVPGWRLGWIIIHDPHGIFRDT-VLQGLKNLLQRILGPATIVQGALPDILENTPQEFFD 301

Query: 141 KIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKE 200
             I +L+  A+ C + LK+IP + CP KPEG+M++MVKL   L   I  D++F  KLA+E
Sbjct: 302 GKISVLKSNAELCYEELKDIPGLVCP-KPEGAMYLMVKLELELFPEIKDDVDFCEKLARE 360

Query: 201 ESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRHA 243
           ESVI LPG   GL +W+RIT  V  S LE    R+K F +RHA
Sbjct: 361 ESVICLPGSAFGLPNWVRITITVPESMLEEACSRIKEFCERHA 403

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. Length = 403

>gnl|CDD|215119 PLN02187, PLN02187, rooty/superroot1

 Score =  240 bits (614), Expect = 2e-77
 Identities = 113/225 (50%), Positives = 160/225 (71%)

Query: 21  GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKR 80
           G+ +S   +  +AETA+KLGIMVI++EVY    FG+ PFVSMG F SIVP+LTL  ISK 
Sbjct: 218 GNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLAGISKG 277

Query: 81  GIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFS 140
            +VPG ++GW+  +DP G+ + + ++ SIK  L+++ DPAT IQ A+P ILEK ++ FF+
Sbjct: 278 WVVPGWKIGWIALNDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALPAILEKADKNFFA 337

Query: 141 KIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKE 200
           K   IL+   D  CDRLK+IPC+ CPKKPE   +++ KL  SL++ I  D++F +KLA+E
Sbjct: 338 KKNKILKHNVDLVCDRLKDIPCVVCPKKPESCTYLLTKLELSLMDNIKDDIDFCVKLARE 397

Query: 201 ESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRHAEK 245
           E+++ LPG  +GLK+W+RIT  VE   LE+ L R+K F  RHA+K
Sbjct: 398 ENLVFLPGDALGLKNWMRITIGVEAHMLEDALERLKGFCTRHAKK 442

Length = 462

>gnl|CDD|188122 TIGR01264, tyr_amTase_E, tyrosine aminotransferase, eukaryotic

 Score =  164 bits (417), Expect = 1e-48
 Identities = 73/223 (32%), Positives = 114/223 (51%), Gaps = 3/223 (1%)

Query: 21  GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKR 80
           GS FS   +  I   A++  + +IA+E+YG + F    F  +    S VP+L+ G ++KR
Sbjct: 182 GSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPVASLSSNVPILSCGGLAKR 241

Query: 81  GIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFS 140
            +VPG RLGW++  D  GIL+D  I D +         P T +QGA+P IL +T +E+F 
Sbjct: 242 WLVPGWRLGWIIIHDRRGILRD--IRDGLVKLSQRILGPCTIVQGALPSILLRTPQEYFD 299

Query: 141 KIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKE 200
             + +L   A  C   L  +P +  P  P G+M++MV +         +D+EF  +L  E
Sbjct: 300 GTLSVLESNAMLCYGALAAVPGLQ-PVMPSGAMYMMVGIEMEHFPEFKNDVEFTERLIAE 358

Query: 201 ESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRHA 243
           +SV  LPG       + R+   V    +E    R++ F +RH 
Sbjct: 359 QSVFCLPGSCFEYPGFFRVVLTVPVVMMEEACSRIQEFCERHY 401

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs [Energy metabolism, Amino acids and amines]. Length = 401

>gnl|CDD|185613 PTZ00433, PTZ00433, tyrosine aminotransferase; Provisional

 Score =  159 bits (403), Expect = 1e-46
 Identities = 74/223 (33%), Positives = 116/223 (52%), Gaps = 3/223 (1%)

Query: 21  GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKR 80
           GS FS   V  I    ++L + +I++E+Y  + F    F S+  F + VP + LG  +K 
Sbjct: 191 GSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDTTVPRVILGGTAKN 250

Query: 81  GIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFS 140
            +VPG RLGWL+  DP+G   D   +D +K    +   P + +Q A+ + L  T +E   
Sbjct: 251 LVVPGWRLGWLLLVDPHGNGGD--FLDGMKRLGMLVCGPCSVVQAALGEALLNTPQEHLE 308

Query: 141 KIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKE 200
           +I+  L E A    + + E   ++    P GSMF+M +L+      I SD+EF  KL +E
Sbjct: 309 QIVAKLEEGAMVLYNHIGECIGLSP-TMPRGSMFLMSRLDLEKFRDIKSDVEFYEKLLEE 367

Query: 201 ESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRHA 243
           E+V VLPG    +  + R+T +     L   + R+KAF +RH 
Sbjct: 368 ENVQVLPGEIFHMPGFTRLTISRPVEVLREAVERIKAFCERHK 410

Length = 412

>gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

 Score =  125 bits (315), Expect = 1e-33
 Identities = 55/218 (25%), Positives = 99/218 (45%), Gaps = 18/218 (8%)

Query: 32  IAETAKKLGIMVIANEVYGHLAFGNTPFVSMG-VFGSIVPLLTLGSISKRGIVPGLRLGW 90
           I E A++  I++I++E+Y  L +      S+  + G+    +T+ S SK   + G R+GW
Sbjct: 188 IVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYGMTGWRIGW 247

Query: 91  LVTSDPNGILQDSGIVDSI-KIFLNISSDPATFIQGAVPQILEKTEE-EFFSKIIDILRE 148
           +V            ++ ++ K+   ++S   T  Q A    L   +  E   ++ +  RE
Sbjct: 248 VVGPPE-------ELIAALRKLKSYLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEYRE 300

Query: 149 TADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPG 208
             D   + L EI  ++  K PEG+ ++  K+       +    EFA KL +E  V V+PG
Sbjct: 301 RRDLLVEALNEIGGLSVVKPPEGAFYLFPKIP-----ELLDSEEFAKKLLEEAGVAVVPG 355

Query: 209 ITVGL---KDWLRITFAVEPSALENGLGRMKAFYDRHA 243
              G    + ++R++ A     LE  L R+  F   + 
Sbjct: 356 SGFGEPPGEGYVRLSLATSEETLEEALRRLARFLAEYR 393

Length = 393

>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family

 Score =  122 bits (307), Expect = 6e-33
 Identities = 59/209 (28%), Positives = 97/209 (46%), Gaps = 18/209 (8%)

Query: 32  IAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91
           +AE AKK GI++I++E Y  L +   P  ++ +  +   ++ L S SK   +PGLR+G+L
Sbjct: 157 LAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYL 216

Query: 92  VTSDPNGILQDSGIVDSIKIFL-NISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETA 150
           +            +++ +K  L   +S P+T  Q A    L    EE   ++ +  R   
Sbjct: 217 IAPPE-------ELLERLKKLLPYTTSGPSTLSQAAAAAAL-DDGEEHLEELRERYRRRR 268

Query: 151 DKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGIT 210
           D   + LKE+  +    KP G  F+ + L          D EF  +L  E  V+V PG  
Sbjct: 269 DALLEALKELGPLVVV-KPSGGFFLWLDLP------EGDDEEFLERLLLEAGVVVRPGSA 321

Query: 211 VG--LKDWLRITFAVEPSALENGLGRMKA 237
            G   + ++R++FA     LE  L R+  
Sbjct: 322 FGEGGEGFVRLSFATPEEELEEALERLAE 350

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Length = 350

>gnl|CDD|235596 PRK05764, PRK05764, aspartate aminotransferase; Provisional

 Score =  104 bits (261), Expect = 5e-26
 Identities = 62/217 (28%), Positives = 101/217 (46%), Gaps = 27/217 (12%)

Query: 32  IAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVP-----LLTLGSISKRGIVPGL 86
           IA+ A +  I V+++E+Y  L +    F S+    S+ P      +T+   SK   + G 
Sbjct: 189 IADVAVEHDIWVLSDEIYEKLVYDGAEFTSIA---SLSPELRDRTITVNGFSKAYAMTGW 245

Query: 87  RLGWLVTSDPNGILQDSGIVDSIKIFLNI----SSDPATFIQ-GAVPQILEKTEEEFFSK 141
           RLG+             G  + IK    +    +S+P +  Q  AV  +     ++   +
Sbjct: 246 RLGYAA-----------GPKELIKAMSKLQSHSTSNPTSIAQYAAVAAL--NGPQDEVEE 292

Query: 142 IIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEE 201
           +     E  D   D L EIP + CPK PEG+ +V   ++  L + I   +EFA  L +E 
Sbjct: 293 MRQAFEERRDLMVDGLNEIPGLECPK-PEGAFYVFPNVSKLLGKSITDSLEFAEALLEEA 351

Query: 202 SVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAF 238
            V V+PGI  G   ++R+++A     LE GL R++ F
Sbjct: 352 GVAVVPGIAFGAPGYVRLSYATSLEDLEEGLERIERF 388

Length = 393

>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II

 Score = 85.8 bits (213), Expect = 1e-19
 Identities = 45/211 (21%), Positives = 79/211 (37%), Gaps = 29/211 (13%)

Query: 32  IAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGSISKRGIVPGLRLGW 90
           + + AK+  I+++ +E Y    FG+   V+     +    LL +GS SK   + G R+G+
Sbjct: 167 LLDLAKEHNILLLVDEAYAGFVFGSLDAVATRALLAEGPNLLVVGSFSKAFGLAGWRVGY 226

Query: 91  LVTSDPNGILQDSGIVDSIKIFLN--ISSDPATFIQGAVPQILEKTEE--EFFSKIIDIL 146
           ++ +          ++  ++       SS      Q A    L           ++   +
Sbjct: 227 ILGNAA--------VISQLRKLARPFYSSTHL---QAAAAAALSDPLLVASELEEMRQRI 275

Query: 147 RETADKCCDRLKEI--PCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVI 204
           +E  D   D L+      +      +   F++  L+          +  A  L +E  V 
Sbjct: 276 KERRDYLRDGLEAAGLSVL----PSQAGFFLLTGLDPEA------ALALAQVLLEEVGVY 325

Query: 205 VLPGITVGLKDWLRITFA-VEPSALENGLGR 234
           V PG + G   WLRIT A      LE  L  
Sbjct: 326 VTPGSSFGGPGWLRITVAGGTEEELEELLEA 356

Length = 357

>gnl|CDD|180404 PRK06108, PRK06108, aspartate aminotransferase; Provisional

 Score = 73.8 bits (182), Expect = 3e-15
 Identities = 54/216 (25%), Positives = 98/216 (45%), Gaps = 36/216 (16%)

Query: 36  AKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVP-----------LLTLGSISKRGIVP 84
            ++ G+ ++A+EVY  L +           G   P           ++ + S SK   + 
Sbjct: 187 CRRHGLWIVADEVYERLYYAP---------GGRAPSFLDIAEPDDRIIFVNSFSKNWAMT 237

Query: 85  GLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIID 144
           G RLGWLV   P  + Q        K+    +S  A F+Q A    L++  E+F ++++ 
Sbjct: 238 GWRLGWLVA--PPALGQVLE-----KLIEYNTSCVAQFVQRAAVAALDEG-EDFVAELVA 289

Query: 145 ILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVI 204
            LR + D   D L+ +P +    KP+G+M+   +     + G+   +  A +L  E  + 
Sbjct: 290 RLRRSRDHLVDALRALPGVEVA-KPDGAMYAFFR-----IPGVTDSLALAKRLVDEAGLG 343

Query: 205 VLPGITVGL--KDWLRITFAVEPSALENGLGRMKAF 238
           + PG   G   + +LR  FA +P+ L+  + R++ F
Sbjct: 344 LAPGTAFGPGGEGFLRWCFARDPARLDEAVERLRRF 379

Length = 382

>gnl|CDD|181402 PRK08363, PRK08363, alanine aminotransferase; Validated

 Score = 71.0 bits (174), Expect = 3e-14
 Identities = 57/215 (26%), Positives = 92/215 (42%), Gaps = 16/215 (7%)

Query: 29  VSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRL 88
           +  I + A +  + VI++E+Y  + +     VS G     VP++ +  +SK     G RL
Sbjct: 188 LKEILDIAGEHDLPVISDEIYDLMTY-EGKHVSPGSLTKDVPVIVMNGLSKVYFATGWRL 246

Query: 89  GWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTE---EEFFSKIIDI 145
           G++   DP G L +  + ++I     I   P T  Q A    L       EE+  K    
Sbjct: 247 GYIYFVDPEGKLAE--VREAIDKLARIRLCPNTPAQFAAIAGLTGPMDYLEEYMKK---- 300

Query: 146 LRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIV 205
           L+E  D    RL EIP I+   KP+G+ ++  ++     +    D EF L +  E  V+ 
Sbjct: 301 LKERRDYIYKRLNEIPGISTT-KPQGAFYIFPRIEEGPWK---DDKEFVLDVLHEAHVLF 356

Query: 206 LPGITVG-LKDW-LRITFAVEPSALENGLGRMKAF 238
           + G   G       R+ F      LE  + R + F
Sbjct: 357 VHGSGFGEYGAGHFRLVFLPPVEILEEAMDRFEEF 391

Length = 398

>gnl|CDD|224089 COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

 Score = 68.1 bits (167), Expect = 3e-13
 Identities = 54/227 (23%), Positives = 89/227 (39%), Gaps = 54/227 (23%)

Query: 32  IAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTL---------GSISKRGI 82
           +   A+K  +++I ++ YG L +   P           PL  L         GS SK  +
Sbjct: 252 LLALAEKYDVLIIEDDYYGELRYDGPP---------PPPLKALDAPGRVIYLGSFSK-TL 301

Query: 83  VPGLRLGWLVTSDPNGILQDSGIVDSIKIFL----NISSDPATFIQGAVPQILEKTEEEF 138
            PGLRLG++V                I+  L         P++  Q A+   L       
Sbjct: 302 APGLRLGYVVAPPEL-----------IEKLLRLKQAADLGPSSLSQAALAAFL---LSGH 347

Query: 139 FSKIIDILRETADKCCDRLKEI-----PCITCPKKPEGSMFVMVKLNYSLLEGINSDMEF 193
           + + +  LR    +  D L E      P +    +PEG +F+ ++L     EGI++    
Sbjct: 348 YDRHLRRLRREYARRRDALLEALAEYLPELATWTRPEGGLFLWLELP----EGIDARELL 403

Query: 194 ALKLAKEESVIVLPGITVGLKD-----WLRITFA-VEPSALENGLGR 234
           A   A E+ V+V P  +    D      LR++F+      +E G+ R
Sbjct: 404 A--AALEKGVVVTPLGSAFSADGDPRNGLRLSFSSPSEEEIEEGIKR 448

Length = 459

>gnl|CDD|180537 PRK06348, PRK06348, aspartate aminotransferase; Provisional

 Score = 66.7 bits (163), Expect = 8e-13
 Identities = 57/219 (26%), Positives = 101/219 (46%), Gaps = 19/219 (8%)

Query: 21  GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVP-LLTLGSISK 79
           G+ FS   +  IA+ A +  + +I++EVY   +F    FV M     +    +T GS SK
Sbjct: 176 GAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSF-YEDFVPMATLAGMPERTITFGSFSK 234

Query: 80  RGIVPGLRLGWLVTSDPNGILQDSGIVDSIK-IFLNISSDPATFIQGAVPQILEKTEEEF 138
              + G R+G+++  D         I+++ K I   I     T  Q A    L K  +  
Sbjct: 235 DFAMTGWRIGYVIAPD--------YIIETAKIINEGICFSAPTISQRAAIYAL-KHRDTI 285

Query: 139 FSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLA 198
              I +  ++  +    R++ IP ++    P+GS++  + +  +   G++S +EF  KL 
Sbjct: 286 VPLIKEEFQKRLEYAYKRIESIPNLSL-HPPKGSIYAFINIKKT---GLSS-VEFCEKLL 340

Query: 199 KEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRM 235
           KE  V+V+PG   G   + ++R+   V    LE    R+
Sbjct: 341 KEAHVLVIPGKAFGESGEGYIRLACTVGIEVLEEAFNRI 379

Length = 384

>gnl|CDD|180403 PRK06107, PRK06107, aspartate aminotransferase; Provisional

 Score = 65.1 bits (159), Expect = 3e-12
 Identities = 46/212 (21%), Positives = 92/212 (43%), Gaps = 31/212 (14%)

Query: 41  IMVIANEVYGHLAFGNTPFVSMGVFGSIVP------LLTLGSISKRGIVPGLRLGWLVTS 94
           ++V+ +++Y H+ F + P   +    +  P      L+T G +SK   + G R+G+    
Sbjct: 201 VLVLTDDIYDHIRFDDEPTPHLL---AAAPELRDRVLVTNG-VSKTYAMTGWRIGYAAGP 256

Query: 95  DPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKC 153
                   + ++ +I    +  SS P++  Q A    L   ++ F ++ + + ++  D  
Sbjct: 257 --------ADLIAAINKLQSQSSSCPSSISQAAAAAAL-NGDQSFVTESVAVYKQRRDYA 307

Query: 154 CDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEG--------INSDMEFALKLAKEESVIV 205
              L  IP ++C   P+G+ ++ V  N + L G        + +D +  L L     V V
Sbjct: 308 LALLNAIPGLSC-LVPDGAFYLYV--NCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAV 364

Query: 206 LPGITVGLKDWLRITFAVEPSALENGLGRMKA 237
           + G   GL  + R++ A     LE    R++ 
Sbjct: 365 VQGTAYGLSPYFRLSIATSLETLEEACARIER 396

Length = 402

>gnl|CDD|181036 PRK07568, PRK07568, aspartate aminotransferase; Provisional

 Score = 64.1 bits (157), Expect = 6e-12
 Identities = 49/212 (23%), Positives = 97/212 (45%), Gaps = 26/212 (12%)

Query: 32  IAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVP-LLTLGSISKRGIVPGLRLGW 90
           +AE AKK  + +I++EVY    +    + S      +   ++ + S+SKR    G R+G 
Sbjct: 187 LAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYSACGARIGC 246

Query: 91  LVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETA 150
           L++ +         ++ +          P T  Q     +L+ T E +F ++ +  ++  
Sbjct: 247 LISKNKE-------LIAAAMKLCQARLSPPTLEQIGAAALLD-TPESYFDEVREEYKKRR 298

Query: 151 DKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKE-----ESVIV 205
           D   + L +IP + C  KP+G+ +++ KL        +++ +FA  L  +     E+V+V
Sbjct: 299 DILYEELNKIPGVVCE-KPKGAFYIIAKLPVD-----DAE-DFAKWLLTDFNYNGETVMV 351

Query: 206 LPG----ITVGL-KDWLRITFAVEPSALENGL 232
            P      T GL K+ +RI + +    L+  +
Sbjct: 352 APASGFYATPGLGKNEIRIAYVLNEEDLKRAM 383

Length = 397

>gnl|CDD|181738 PRK09265, PRK09265, aminotransferase AlaT; Validated

 Score = 64.1 bits (157), Expect = 6e-12
 Identities = 55/228 (24%), Positives = 101/228 (44%), Gaps = 31/228 (13%)

Query: 32  IAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91
           I E A++  +++ A+E+Y  + +     +S+      +  +T   +SK   V G R+GW+
Sbjct: 193 IVEIARQHNLIIFADEIYDKILYDGAVHISIASLAPDLLCVTFNGLSKAYRVAGFRVGWM 252

Query: 92  VTSDPNGILQDS----GIVDSIKIFLNISSDPATF-IQGAV--PQILEKTEEEFFSKIID 144
           V S P    +       ++ S+++  N+   PA   IQ A+   Q            I +
Sbjct: 253 VLSGPKKHAKGYIEGLDMLASMRLCANV---PAQHAIQTALGGYQ-----------SINE 298

Query: 145 I------LRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLA 198
           +      L E  D+  + L  IP ++C  KP+G+++   KL+  +   I+ D +F L L 
Sbjct: 299 LILPGGRLYEQRDRAWELLNAIPGVSC-VKPKGALYAFPKLDPKVYP-IHDDEQFVLDLL 356

Query: 199 KEESVIVLPGITVGLK--DWLRITFAVEPSALENGLGRMKAFYDRHAE 244
            +E V+++ G        D  RI        LE  +GR+  F   + +
Sbjct: 357 LQEKVLLVQGTGFNWPEPDHFRIVTLPRVDDLEEAIGRIGRFLSGYRQ 404

Length = 404

>gnl|CDD|235989 PRK07324, PRK07324, transaminase; Validated

 Score = 61.9 bits (151), Expect = 3e-11
 Identities = 52/236 (22%), Positives = 96/236 (40%), Gaps = 41/236 (17%)

Query: 21  GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPL----LTLGS 76
           G+    +++  I E A+ +   V+++EVY        P    G   SI  L    ++  S
Sbjct: 167 GALMDRAYLEEIVEIARSVDAYVLSDEVY-------RPLDEDGSTPSIADLYEKGISTNS 219

Query: 77  ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN---IS----SDP-ATFIQGAVP 128
           +SK   +PG+R+GW+          +  ++D ++ + +   I      D  A+       
Sbjct: 220 MSKTYSLPGIRVGWIAA--------NEEVIDILRKYRDYTMICAGVFDDMLASLALEHRD 271

Query: 129 QILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGIN 188
            ILE+           I+R       + + + P ++  K    S    VKL+  +     
Sbjct: 272 AILERNR--------KIVRTNLAILDEWVAKEPRVSYVKPKAVST-SFVKLDVDM----- 317

Query: 189 SDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRHAE 244
              +F LKL KE  V+++PG    L+  +RI +  +   L+ GL ++  F      
Sbjct: 318 PSEDFCLKLLKETGVLLVPGNRFDLEGHVRIGYCCDTETLKKGLKKLSEFLREFDS 373

Length = 373

>gnl|CDD|237361 PRK13355, PRK13355, bifunctional HTH-domain containing protein/aminotransferase; Provisional

 Score = 60.5 bits (147), Expect = 1e-10
 Identities = 46/220 (20%), Positives = 96/220 (43%), Gaps = 25/220 (11%)

Query: 32  IAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91
           I + A++  +++ ++E+Y  L        S+      +  +T   +SK  ++ G R+GW+
Sbjct: 306 IVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLAPDLFCVTFSGLSKSHMIAGYRIGWM 365

Query: 92  VTSDPNGILQDSGIVDSIKIFLNI---SSDPA-TFIQGA------VPQILEKTEEEFFSK 141
           + S    I +D   ++ + +  N+   S+ PA + +Q A      V   L          
Sbjct: 366 ILSGNKRIAKD--YIEGLNMLANMRLCSNVPAQSIVQTALGGHQSVKDYLVPGGR----- 418

Query: 142 IIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEE 201
               + E  +   + L  IP I+   KP+ + ++  K++      I+ D +FAL L  ++
Sbjct: 419 ----VYEQRELVYNALNAIPGISA-VKPKAAFYIFPKIDVKKFN-IHDDEQFALDLLHDK 472

Query: 202 SVIVLPGITVGLK--DWLRITFAVEPSALENGLGRMKAFY 239
            V+++ G        D  R+ +      LE+ + R+  F+
Sbjct: 473 KVLIVQGTGFNWDKPDHFRVVYLPRLEDLEDAMDRLADFF 512

Length = 517

>gnl|CDD|236248 PRK08361, PRK08361, aspartate aminotransferase; Provisional

 Score = 60.3 bits (146), Expect = 1e-10
 Identities = 53/208 (25%), Positives = 99/208 (47%), Gaps = 16/208 (7%)

Query: 32  IAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91
           IA+ A+   I ++++E Y H  +       M  +     +L   S SK   + G RLG++
Sbjct: 191 IADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPDNTILA-NSFSKTFAMTGWRLGFV 249

Query: 92  VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGA-VPQILEKTEEEFFSKIIDILRETA 150
           +   P  +     I D IK+   I  + A+F+Q A +  +  K   +   ++     E  
Sbjct: 250 IA--PEQV-----IKDMIKLHAYIIGNVASFVQIAGIEALRSKESWKAVEEMRKEYNERR 302

Query: 151 DKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGIT 210
                RLKE+P I    +P+G+ +V   ++ +   G++S+ +FA  L ++  V+V+PG  
Sbjct: 303 KLVLKRLKEMPHIK-VFEPKGAFYVFANIDET---GMSSE-DFAEWLLEKARVVVIPGTA 357

Query: 211 VGL--KDWLRITFAVEPSALENGLGRMK 236
            G   + ++RI++A     L   + RM+
Sbjct: 358 FGKAGEGYIRISYATSKEKLIEAMERME 385

Length = 391

>gnl|CDD|234250 TIGR03540, DapC_direct, LL-diaminopimelate aminotransferase

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 57/215 (26%), Positives = 94/215 (43%), Gaps = 18/215 (8%)

Query: 27  SFVSPIAETAKKLGIMVIANEVYGHLAF-GNTPFVSMGVFGSIVPLLTLGSISKRGIVPG 85
            F   + E AK+  I+V  +  Y  + F G      + V G+    +   S+SK   + G
Sbjct: 184 KFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTG 243

Query: 86  LRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDI 145
            R+G  V +    ++   G V +     N+ S     IQ A    L    ++   +I  I
Sbjct: 244 WRIGMAVGN--ADLIAGLGKVKT-----NVDSGVFQAIQYAAIAALN-GPQDVVKEIRKI 295

Query: 146 LRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIV 205
            +   D   + LK+I  I   +KP+ + +V V +     EG  S  EFA +L +E  V+V
Sbjct: 296 YQRRRDLLLEALKKIG-IDV-EKPKATFYVWVPVP----EGYTS-AEFAARLLEETGVVV 348

Query: 206 LPGITVGL--KDWLRITFAVEPSALENGLGRMKAF 238
            PG+  G   + ++RI+  V    LE  + R+K  
Sbjct: 349 TPGVGFGEYGEGYIRISLTVPDERLEEAVARIKKL 383

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia and the clade containing the Chlamydia gene is a neighboring one in the same pfam00155 superfamily so it seems quite reasonable that these enzymes catalyze the same transformation. Length = 383

>gnl|CDD|180281 PRK05839, PRK05839, hypothetical protein; Provisional

 Score = 51.6 bits (124), Expect = 9e-08
 Identities = 56/223 (25%), Positives = 91/223 (40%), Gaps = 45/223 (20%)

Query: 34  ETAKKLGIMVIANEVYGHLAFGNTPFVSM---------GVFGSIVPLLTLGSISKRGIVP 84
           + A K   ++I +E Y  + + NTP  S+           F ++   L + SISKR   P
Sbjct: 182 KLALKHDFILINDECYSEI-YENTPPPSLLEASILVGNESFKNV---LVINSISKRSSAP 237

Query: 85  GLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKI-- 142
           GLR G+        I  D+ I+   K +        T++  A P  L+K     +     
Sbjct: 238 GLRSGF--------IAGDASILKKYKAY-------RTYLGCASPLPLQKAAAVAWLDDEH 282

Query: 143 IDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEES 202
            +  R    K     +EI  IT    P  + +V +         +++D EF  KL + E 
Sbjct: 283 AEFFRNIYAKNLKLAREILGIT---IPPATFYVWLP--------VDNDEEFTKKLYQNEG 331

Query: 203 VIVLPGITVGL----KDWLRITFAVEPSALENGLGRMKAFYDR 241
           + VLPG  +G     K ++RI    +   LE  L  +K + + 
Sbjct: 332 IKVLPGSFLGRNGIGKGYVRIALVYDTPKLEKALEIIKTYLEN 374

Length = 374

>gnl|CDD|235654 PRK05957, PRK05957, aspartate aminotransferase; Provisional

 Score = 49.3 bits (118), Expect = 6e-07
 Identities = 48/203 (23%), Positives = 88/203 (43%), Gaps = 19/203 (9%)

Query: 40  GIMVIANEVYGHLAFGNTPFVSMGVF-GSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNG 98
           GI  I++E Y +  +      S G   GS    ++L S+SK       R+G++V   P  
Sbjct: 193 GIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYGFASWRIGYMVI--PIH 250

Query: 99  ILQD-SGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRL 157
           +L+    I D+I I       P    Q A    L +  + +  + +  + +        L
Sbjct: 251 LLEAIKKIQDTILIC------PPVVSQYAALGAL-QVGKSYCQQHLPEIAQVRQILLKSL 303

Query: 158 KEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKD-- 215
            ++          G+ +  +K+N  L     +D E   +L +E  V V+PG T G+K+  
Sbjct: 304 GQLQDRCTLHPANGAFYCFLKVNTDL-----NDFELVKQLIREYRVAVIPGTTFGMKNGC 358

Query: 216 WLRITF-AVEPSALENGLGRMKA 237
           +LRI + A++ +  + G+ R+  
Sbjct: 359 YLRIAYGALQKATAKEGIERLVQ 381

Length = 389

>gnl|CDD|180720 PRK06836, PRK06836, aspartate aminotransferase; Provisional

 Score = 49.0 bits (118), Expect = 7e-07
 Identities = 52/228 (22%), Positives = 97/228 (42%), Gaps = 46/228 (20%)

Query: 33  AETAKKLG-------------IMVIANEVYGHLAFGNT--PFVSMGVFGSIVPLLTLGSI 77
            ET K L              I +I++E Y  + +     P++      SIV    + S 
Sbjct: 187 EETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIFKYYDNSIV----VYSF 242

Query: 78  SKRGIVPGLRLGWLVTSD--PNGILQDSGIVDSIKI--FLNISSDPATFIQGAVPQILEK 133
           SK   +PG R+G++  +    +     + +V + +I  F+N    PA   Q  V + L+ 
Sbjct: 243 SKSLSLPGERIGYIAVNPEMEDADDLVAALVFANRILGFVNA---PALM-QRVVAKCLDA 298

Query: 134 TEEEFFSKIIDILRETADKCCDRLKEI--PCITCPKKPEGSMFVMVKLNYSLLEGINSDM 191
           T +      + I +   D   D L E+   C+    KP+G+ ++  K   S  E    D+
Sbjct: 299 TVD------VSIYKRNRDLLYDGLTELGFECV----KPQGAFYLFPK---SPEE---DDV 342

Query: 192 EFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFY 239
            F  + AK+ +++++PG   G   + R+++ V+   +E  L   +   
Sbjct: 343 AF-CEKAKKHNLLLVPGSGFGCPGYFRLSYCVDTETIERSLPAFEKLA 389

Length = 394

>gnl|CDD|235985 PRK07309, PRK07309, aromatic amino acid aminotransferase; Validated

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 51/237 (21%), Positives = 98/237 (41%), Gaps = 38/237 (16%)

Query: 21  GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKR 80
           G  +S   +  +A+  KK  I VI++EVY  L +   P VS+  +     +L  G +SK 
Sbjct: 180 GVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEYLPDQTILING-LSKS 238

Query: 81  GIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQIL-------EK 133
             + G R+G +                 IK    + +   T  Q A  + L         
Sbjct: 239 HAMTGWRIGLIFAPAEF-------TAQLIKSHQYLVTAATTMAQFAAVEALTNGKDDALP 291

Query: 134 TEEEFFSK---IIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSD 190
            ++E+  +   II+ + +   K               KP+G+ ++  K+      G N D
Sbjct: 292 MKKEYIKRRDYIIEKMTDLGFKII-------------KPDGAFYIFAKIP----AGYNQD 334

Query: 191 -MEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKAFYDRHAE 244
             +F    A++++V  +PG   G   + ++R+++A     ++  + R+K + + HA 
Sbjct: 335 SFKFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYAASMETIKEAMKRLKEYMEEHAG 391

Length = 391

>gnl|CDD|215089 PLN00175, PLN00175, aminotransferase family protein; Provisional

 Score = 44.1 bits (104), Expect = 3e-05
 Identities = 57/228 (25%), Positives = 97/228 (42%), Gaps = 32/228 (14%)

Query: 21  GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSM----GVFGSIVPLLTLGS 76
           G  F+   +  IA   K+  ++   +EVY  LAF     +SM    G++   V   T+ S
Sbjct: 201 GKMFTREELELIASLCKENDVLAFTDEVYDKLAF-EGDHISMASLPGMYERTV---TMNS 256

Query: 77  ISKRGIVPGLRLGWLVTSDPN---GILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEK 133
           + K   + G ++GW + + P+   G+ Q          FL  ++  AT +Q A    L +
Sbjct: 257 LGKTFSLTGWKIGWAI-APPHLTWGVRQAHS-------FLTFAT--ATPMQWAAVAAL-R 305

Query: 134 TEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEF 193
             E ++ ++        D   + LKE+     P    G+ FVMV  +++   G  +D+ F
Sbjct: 306 APESYYEELKRDYSAKKDILVEGLKEVGFKVYP--SSGTYFVMV--DHTPF-GFENDIAF 360

Query: 194 ALKLAKEESVIVLPGITVGL-----KDWLRITFAVEPSALENGLGRMK 236
              L +E  V  +P     L     K+ +R  F  +   L   + RMK
Sbjct: 361 CEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFCKDEETLRAAVERMK 408

Length = 413

>gnl|CDD|181081 PRK07681, PRK07681, aspartate aminotransferase; Provisional

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 50/191 (26%), Positives = 75/191 (39%), Gaps = 24/191 (12%)

Query: 27  SFVSPIAETAKKLGIMVIANEVYGHLAF-GNTPFVSMGVFGSIVPLLTLGSISKRGIVPG 85
            F   +   AKK  I+V+ +  Y    F GN P   + V G+    + + S+SK   + G
Sbjct: 186 DFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYSLAG 245

Query: 86  LRLGWLVTSDPNGILQDSGIVDSIKIFLNISS--DPATF--IQGAVPQILEKTEEEFFSK 141
            R+G+++           G  + ++      S  D   F  IQ A    L      F  K
Sbjct: 246 SRIGYMI-----------GNEEIVRALTQFKSNTDYGVFLPIQKAACAALRNGAA-FCEK 293

Query: 142 IIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEE 201
              I +E  D   D  +         KP GSMFV  ++     +G  S + FA  L    
Sbjct: 294 NRGIYQERRDTLVDGFRTFGWNV--DKPAGSMFVWAEIP----KGWTS-LSFAYALMDRA 346

Query: 202 SVIVLPGITVG 212
           +V+V PG   G
Sbjct: 347 NVVVTPGHAFG 357

Length = 399

>gnl|CDD|240391 PTZ00377, PTZ00377, alanine aminotransferase; Provisional

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 56/242 (23%), Positives = 103/242 (42%), Gaps = 33/242 (13%)

Query: 32  IAETAKKLGIMVIANEVYG-HLAFGNTPFVSM--------GVFGSIVPLLTLGSISKRGI 82
           I +   + GI+++A+EVY  ++  G  PF+S           + + V L++  S SK GI
Sbjct: 243 IIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSK-GI 301

Query: 83  VP--GLRLGW--LVTSDPNGILQDSGIVDSIKIFL--NISSDPATFIQGAVPQILEKTEE 136
           +   G R G+  L    P    Q   I     I L  N+     T +    P+  + +  
Sbjct: 302 IGECGRRGGYFELTNIPPEVREQ---IYKLASINLCSNVVGQLMTGLMCNPPREGDASYP 358

Query: 137 EF---FSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVK-------LNYSLLEG 186
            +      I   L+  A+   D L +I  ++C +  EG+M+   +       +  +   G
Sbjct: 359 LYKRERDAIFTSLKRRAELLTDELNKIEGVSC-QPVEGAMYAFPRIELPEKAIQEAKERG 417

Query: 187 INSDMEFALKLAKEESVIVLPGITVGLKD---WLRITFAVEPSALENGLGRMKAFYDRHA 243
           +  D+ + L+L +   ++V+PG   G K      RIT       +E  + ++K F++   
Sbjct: 418 LAPDVLYCLELLESTGIVVVPGSGFGQKPGTYHFRITILPPEEQIEEMVKKIKEFHESFM 477

Query: 244 EK 245
           +K
Sbjct: 478 KK 479

Length = 481

>gnl|CDD|236095 PRK07777, PRK07777, aminotransferase; Validated

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 37/158 (23%), Positives = 65/158 (41%), Gaps = 11/158 (6%)

Query: 21  GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVF-GSIVPLLTLGSISK 79
           G+  + + ++ IAE A +  ++VI +EVY HL F     + +    G     +T+ S +K
Sbjct: 173 GTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAK 232

Query: 80  RGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFF 139
              V G ++GW        I   +  V + K +L          Q AV   L+  E+ + 
Sbjct: 233 TFNVTGWKIGW-ACGPAPLI---AA-VRAAKQYLTYVG--GAPFQPAVAHALD-HEDAWV 284

Query: 140 SKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMV 177
           + + D L+   D+    L E           G+ F+  
Sbjct: 285 AALRDSLQAKRDRLAAGLAEAGFEVHD--SAGTYFLCA 320

Length = 387

>gnl|CDD|181082 PRK07682, PRK07682, hypothetical protein; Validated

 Score = 42.8 bits (101), Expect = 8e-05
 Identities = 53/224 (23%), Positives = 98/224 (43%), Gaps = 18/224 (8%)

Query: 21  GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGS-ISK 79
           G+  + S +  IA   +K  ++V+++E+Y  L + +  + S      +     L S  SK
Sbjct: 168 GAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTY-DEAYTSFASIKGMRERTILISGFSK 226

Query: 80  RGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFF 139
              + G RLG+   + P    +       +KI         T  Q A  + L    ++  
Sbjct: 227 GFAMTGWRLGF--IAAPVYFSEAM-----LKIHQYSMMCAPTMAQFAALEALRAGNDDV- 278

Query: 140 SKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAK 199
            ++ D  R+  +       EI  +TC   P G+ +    ++ +   G++S+ EFA +L  
Sbjct: 279 IRMRDSYRKRRNFFVTSFNEIG-LTCHV-PGGAFYAFPSISST---GLSSE-EFAEQLLL 332

Query: 200 EESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKAFYDR 241
           EE V V+PG   G   + ++R ++A     L+  + RMK F + 
Sbjct: 333 EEKVAVVPGSVFGESGEGFIRCSYATSLEQLQEAMKRMKRFVEN 376

Length = 378

>gnl|CDD|181749 PRK09276, PRK09276, LL-diaminopimelate aminotransferase; Provisional

 Score = 42.6 bits (101), Expect = 8e-05
 Identities = 50/218 (22%), Positives = 91/218 (41%), Gaps = 28/218 (12%)

Query: 27  SFVSPIAETAKKLGIMVIANEVYGHLAF-GNTPFVSMGVFGSIVPLLTLGSISKRGIVPG 85
            F   + + AKK  I+V  +  Y  +A+ G  P   + V G+    +   S+SK   + G
Sbjct: 186 EFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYNMTG 245

Query: 86  LRLGWLVTSDPNGILQDSGIVDSI-KIFLNISSDPATFIQGAVPQILEKTEEEFFSKIID 144
            R+G+ V         ++ ++  + K+  N+ S     IQ A    L    +E   ++  
Sbjct: 246 WRIGFAVG--------NADLIAGLGKVKSNVDSGVFQAIQEAGIAAL-NGPQEVVEELRK 296

Query: 145 ILRETADKCCDRLKEI--PCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEES 202
           I +E  D   + L+++        + P+ + +V   +     +G  S  EFA  L  +  
Sbjct: 297 IYQERRDILVEGLRKLGLEV----EPPKATFYVWAPVP----KGYTS-AEFATLLLDKAG 347

Query: 203 VIVLPGITVGLKD----WLRITFAVEPSALENGLGRMK 236
           V+V PG   G  +    + RI   V    +E  + R+K
Sbjct: 348 VVVTPG--NGFGEYGEGYFRIALTVPDERIEEAVERIK 383

Length = 385

>gnl|CDD|188462 TIGR03947, viomycin_VioD, capreomycidine synthase

 Score = 39.8 bits (93), Expect = 7e-04
 Identities = 38/172 (22%), Positives = 68/172 (39%), Gaps = 23/172 (13%)

Query: 72  LTLGSISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQIL 131
           ++ G++SK   +PGLR+GW V   P  +L +   +  ++ +  +S  P   +       +
Sbjct: 205 ISFGTLSKAFGLPGLRVGWCVG--PADLLAE---LVRLRDYTTLSLSPLVELLAE--VAV 257

Query: 132 EKTEEEFFSKIIDILRETADKCCDRLKEIPC-----ITCPKKPEGSMFVMVKLNYSLLEG 186
           E  +      +I      A     RL +        + C   PEG +    +       G
Sbjct: 258 EHADA-----LIGPRLAEARANRRRLLDWAAAHPDVVRCTP-PEGGVAAFPRF-----PG 306

Query: 187 INSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAF 238
                +   +L     V+++PG   G  D +R+ F    + L  GL R+ AF
Sbjct: 307 HADVTDLCRRLLARHGVLLVPGSCFGAADRMRLGFGGSSAELRAGLARLSAF 358

Members of this family are the enzyme capreomycidine synthase, which performs the second of two steps in the biosynthesis of 2S,3R-capreomycidine from arginine. Capreomycidine is an unusual amino acid used by non-ribosomal peptide synthases (NRPS) to make the tuberactinomycin class of peptide antibiotic. The best characterized member is VioD from the biosynthetic pathway for viomycin [Cellular processes, Biosynthesis of natural products]. Length = 359

>gnl|CDD|181268 PRK08175, PRK08175, aminotransferase; Validated

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 47/193 (24%), Positives = 79/193 (40%), Gaps = 25/193 (12%)

Query: 27  SFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVS-MGVFGSIVPLLTLGSISKRGIVPG 85
            F   +   AK+  ++V+ +  Y  + +      S M V G+    +   ++SK   + G
Sbjct: 184 EFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSYNMAG 243

Query: 86  LRLGWLVTSDPNGILQDSGIVDSIKIFLNISS--DPATF--IQGAVPQILEKTEEEFFSK 141
            R+G++V           G  + +     I S  D  TF  +Q A    LE  +++    
Sbjct: 244 WRIGFMV-----------GNPELVSALARIKSYHDYGTFTPLQVAAIAALE-GDQQCVRD 291

Query: 142 IIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKL--NYSLLEGINSDMEFALKLAK 199
           I +  +   D     L E   +   + P+ SM+V  K+   Y+ +      +EFA KL  
Sbjct: 292 IAEQYKRRRDVLVKGLHEAGWMV--EMPKASMYVWAKIPEPYAAM----GSLEFAKKLLN 345

Query: 200 EESVIVLPGITVG 212
           E  V V PGI  G
Sbjct: 346 EAKVCVSPGIGFG 358

Length = 395

>gnl|CDD|180734 PRK06855, PRK06855, aminotransferase; Validated

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 32  IAETAKKLGIMVIANEVYGHLAFGNTPFVSMG-VFGSIVPLLTLGSISKRGIVPGLRLGW 90
           I + A++  + +I +E+Y ++ +     V +  V G  VP + L  ISK    PG R GW
Sbjct: 196 IVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGD-VPGIALKGISKELPWPGSRCGW 254

Query: 91  L 91
           +
Sbjct: 255 I 255

Length = 433

>gnl|CDD|183514 PRK12414, PRK12414, putative aminotransferase; Provisional

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 53/232 (22%), Positives = 104/232 (44%), Gaps = 37/232 (15%)

Query: 21  GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPL-LTLGSISK 79
            + FS + ++ +A+  +   I+++++EVY H+ F      SM     +    + + S  K
Sbjct: 176 ATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGK 235

Query: 80  RGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEE--- 136
              V G R+G+ +   P  ++ +   +  +  F+  S+D  T +Q A  + L +      
Sbjct: 236 SYHVTGWRVGYCLA--PAELMDE---IRKVHQFMVFSAD--TPMQHAFAEALAEPASYLG 288

Query: 137 --EFFSKIIDIL-RETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEF 193
              F+ +  D+L RE A     R + +P        EGS F++ +  +   E   SD +F
Sbjct: 289 LGAFYQRKRDLLARELAGS---RFELLP-------SEGSFFMLARFRHFSDE---SDSDF 335

Query: 194 ALKLAKEESVIVLP-------GITVGLKDWLRITFAVEPSALENGLGRMKAF 238
            L+L ++  V  +P       G   GL   +R++F+ + + L  G  R+ + 
Sbjct: 336 VLRLIRDARVATIPLSAFYTDGTDTGL---IRLSFSKDDATLVEGARRLCSL 384

Length = 384

>gnl|CDD|235772 PRK06290, PRK06290, aspartate aminotransferase; Provisional

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 47/196 (23%), Positives = 81/196 (41%), Gaps = 39/196 (19%)

Query: 27  SFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGL 86
            F   + + AK+  I+V+ +  Y  L F   P   + V G+    + + S+SK   + G 
Sbjct: 199 EFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAKEVGVEIHSLSKAYNMTGW 258

Query: 87  RLGWLVTSDPNGILQDSGIVDSIKIFLNI--SSDPATF--IQGAV------PQILEKTEE 136
           RL ++V ++             +K F  +  ++D   F  IQ A       P+I EK  E
Sbjct: 259 RLAFVVGNE-----------LIVKAFATVKDNNDSGQFIAIQKAGIYALDHPEITEKIRE 307

Query: 137 EF---FSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGI--NSDM 191
           ++     K++ IL E   K              + P G+ ++ VK       GI   +  
Sbjct: 308 KYSRRLDKLVKILNEVGFKA-------------EMPGGTFYLYVKAPKGTKSGIKFENAE 354

Query: 192 EFALKLAKEESVIVLP 207
           EF+  L KE+ +  +P
Sbjct: 355 EFSQYLIKEKLISTVP 370

Length = 410

>gnl|CDD|224090 COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

 Score = 37.6 bits (88), Expect = 0.003
 Identities = 51/219 (23%), Positives = 93/219 (42%), Gaps = 24/219 (10%)

Query: 32  IAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVP-----LLTLGSISKRGIVPGL 86
           IAE   + G+ VI++E++  L  G    +    F S+        +TL S SK   + GL
Sbjct: 183 IAELCLRHGVRVISDEIHADLVLGGHKHIP---FASLSERFADNSITLTSASKTFNLAGL 239

Query: 87  RLGWLVTSDPNGILQDSGIVDSIKI-FLNISSDPATFIQGAVPQILEKTEEEFFSKIIDI 145
           +  +++ S+     +    +    +   +     AT       +      E +  ++++ 
Sbjct: 240 KCAYIIISNRELRAKFLKRLKRNGLHGPSALGIIAT-------EAAYNQGEPWLDELLEY 292

Query: 146 LRETADKCCDRL-KEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVI 204
           L++  D   D L K +P +    +P+G+      L+   L G+  D E A  L +E  V 
Sbjct: 293 LKDNRDYVADFLNKHLPGVKV-TEPQGTYLAW--LDCREL-GL-DDSELAEFLLEEAKVA 347

Query: 205 VLPGITVGL--KDWLRITFAVEPSALENGLGRMKAFYDR 241
           + PG T G     ++R+ FA   + LE  L R+K    +
Sbjct: 348 LSPGSTFGEEGSGFVRLNFACPRAILEEALERLKRALKK 386

Length = 388

>gnl|CDD|181212 PRK08056, PRK08056, threonine-phosphate decarboxylase; Provisional

 Score = 37.4 bits (87), Expect = 0.004
 Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 16/82 (19%)

Query: 27  SFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLT-------LGSISK 79
             +  IAE  K L I +I +E +       T F+         P L        L S++K
Sbjct: 162 QLLQAIAERCKSLNIALILDEAFIDFIPDETGFI---------PQLADNPHLWVLRSLTK 212

Query: 80  RGIVPGLRLGWLVTSDPNGILQ 101
              +PGLRLG+LV SD   + +
Sbjct: 213 FYAIPGLRLGYLVNSDDAAVAR 234

Length = 356

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	246
COG0436	393	Aspartate/tyrosine/aromatic aminotransferase [Amin	100.0
KOG0259	447	consensus Tyrosine aminotransferase [Amino acid tr	100.0
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	100.0
PLN02187	462	rooty/superroot1	100.0
PLN02656	409	tyrosine transaminase	100.0
PLN00143	409	tyrosine/nicotianamine aminotransferase; Provision	100.0
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	100.0
PTZ00433	412	tyrosine aminotransferase; Provisional	100.0
PRK06855	433	aminotransferase; Validated	100.0
PRK06207	405	aspartate aminotransferase; Provisional	100.0
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	100.0
PLN00175	413	aminotransferase family protein; Provisional	100.0
PLN02607	447	1-aminocyclopropane-1-carboxylate synthase	100.0
PRK08636	403	aspartate aminotransferase; Provisional	100.0
PRK05957	389	aspartate aminotransferase; Provisional	100.0
PRK06107	402	aspartate aminotransferase; Provisional	100.0
PRK13355	517	bifunctional HTH-domain containing protein/aminotr	100.0
PRK07681	399	aspartate aminotransferase; Provisional	100.0
PRK09148	405	aminotransferase; Validated	100.0
PRK07324	373	transaminase; Validated	100.0
PRK06348	384	aspartate aminotransferase; Provisional	100.0
PLN02450	468	1-aminocyclopropane-1-carboxylate synthase	100.0
PLN02376	496	1-aminocyclopropane-1-carboxylate synthase	100.0
PRK07682	378	hypothetical protein; Validated	100.0
COG1168	388	MalY Bifunctional PLP-dependent enzyme with beta-c	100.0
PRK07366	388	succinyldiaminopimelate transaminase; Validated	100.0
PTZ00377	481	alanine aminotransferase; Provisional	100.0
PRK08960	387	hypothetical protein; Provisional	100.0
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	100.0
PRK08068	389	transaminase; Reviewed	100.0
COG1167	459	ARO8 Transcriptional regulators containing a DNA-b	100.0
PRK07590	409	L,L-diaminopimelate aminotransferase; Validated	100.0
PRK09276	385	LL-diaminopimelate aminotransferase; Provisional	100.0
PRK09147	396	succinyldiaminopimelate transaminase; Provisional	100.0
PRK12414	384	putative aminotransferase; Provisional	100.0
PRK09265	404	aminotransferase AlaT; Validated	100.0
KOG0257	420	consensus Kynurenine aminotransferase, glutamine t	100.0
PRK09082	386	methionine aminotransferase; Validated	100.0
PRK07568	397	aspartate aminotransferase; Provisional	100.0
PRK05942	394	aspartate aminotransferase; Provisional	100.0
PRK06108	382	aspartate aminotransferase; Provisional	100.0
PRK07683	387	aminotransferase A; Validated	100.0
PRK08912	387	hypothetical protein; Provisional	100.0
PRK07337	388	aminotransferase; Validated	100.0
PRK07309	391	aromatic amino acid aminotransferase; Validated	100.0
PLN02231	534	alanine transaminase	100.0
PRK08363	398	alanine aminotransferase; Validated	100.0
TIGR03542	402	DAPAT_plant LL-diaminopimelate aminotransferase. T	100.0
PRK08361	391	aspartate aminotransferase; Provisional	100.0
PRK05764	393	aspartate aminotransferase; Provisional	100.0
TIGR03538	393	DapC_gpp succinyldiaminopimelate transaminase. Thi	100.0
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	100.0
PRK05839	374	hypothetical protein; Provisional	100.0
PRK08175	395	aminotransferase; Validated	100.0
PRK07777	387	aminotransferase; Validated	100.0
PRK06290	410	aspartate aminotransferase; Provisional	100.0
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	100.0
PRK06358	354	threonine-phosphate decarboxylase; Provisional	100.0
PRK09275	527	aspartate aminotransferase; Provisional	100.0
PRK09440	416	avtA valine--pyruvate transaminase; Provisional	100.0
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	100.0
PRK07550	386	hypothetical protein; Provisional	100.0
TIGR03801	521	asp_4_decarbox aspartate 4-decarboxylase. This enz	100.0
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	100.0
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	100.0
PRK06425	332	histidinol-phosphate aminotransferase; Validated	100.0
KOG0256	471	consensus 1-aminocyclopropane-1-carboxylate syntha	100.0
PRK07392	360	threonine-phosphate decarboxylase; Validated	100.0
PRK06959	339	putative threonine-phosphate decarboxylase; Provis	100.0
PRK04781	364	histidinol-phosphate aminotransferase; Provisional	100.0
PRK05664	330	threonine-phosphate decarboxylase; Reviewed	100.0
PRK08056	356	threonine-phosphate decarboxylase; Provisional	100.0
KOG0634	472	consensus Aromatic amino acid aminotransferase and	100.0
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	100.0
PRK08637	388	hypothetical protein; Provisional	100.0
PLN02672	1082	methionine S-methyltransferase	100.0
PLN02397	423	aspartate transaminase	100.0
COG0079	356	HisC Histidinol-phosphate/aromatic aminotransferas	100.0
PRK14809	357	histidinol-phosphate aminotransferase; Provisional	100.0
PRK06836	394	aspartate aminotransferase; Provisional	100.0
PRK06225	380	aspartate aminotransferase; Provisional	100.0
PTZ00376	404	aspartate aminotransferase; Provisional	100.0
PRK02610	374	histidinol-phosphate aminotransferase; Provisional	100.0
PRK01533	366	histidinol-phosphate aminotransferase; Validated	100.0
PRK09257	396	aromatic amino acid aminotransferase; Provisional	100.0
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	100.0
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	100.0
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	100.0
PRK02731	367	histidinol-phosphate aminotransferase; Validated	100.0
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	100.0
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	100.0
PRK07908	349	hypothetical protein; Provisional	100.0
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	99.98
PRK08354	311	putative aminotransferase; Provisional	99.98
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	99.97
PRK04635	354	histidinol-phosphate aminotransferase; Provisional	99.97
PLN02368	407	alanine transaminase	99.97
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	99.97
COG3977	417	Alanine-alpha-ketoisovalerate (or valine-pyruvate)	99.97
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	99.97
PRK09105	370	putative aminotransferase; Provisional	99.97
PRK14808	335	histidinol-phosphate aminotransferase; Provisional	99.97
PRK03321	352	putative aminotransferase; Provisional	99.97
PRK00950	361	histidinol-phosphate aminotransferase; Validated	99.97
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	99.97
PRK03967	337	histidinol-phosphate aminotransferase; Provisional	99.96
cd00609	350	AAT_like Aspartate aminotransferase family. This f	99.95
PF12897	425	Aminotran_MocR: Alanine-glyoxylate amino-transfera	99.94
KOG0633	375	consensus Histidinol phosphate aminotransferase [A	99.94
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	99.94
PRK02627	396	acetylornithine aminotransferase; Provisional	99.93
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	99.92
PRK01278	389	argD acetylornithine transaminase protein; Provisi	99.91
PLN02822	481	serine palmitoyltransferase	99.91
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	99.91
PRK13392	410	5-aminolevulinate synthase; Provisional	99.91
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	99.91
PRK03244	398	argD acetylornithine aminotransferase; Provisional	99.9
PRK08088	425	4-aminobutyrate aminotransferase; Validated	99.9
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	99.9
KOG0258	475	consensus Alanine aminotransferase [Amino acid tra	99.89
PRK02936	377	argD acetylornithine aminotransferase; Provisional	99.89
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	99.88
PRK09064	407	5-aminolevulinate synthase; Validated	99.88
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	99.88
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	99.88
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	99.88
PRK04260	375	acetylornithine aminotransferase; Provisional	99.88
PLN02483	489	serine palmitoyltransferase	99.88
PLN00144	382	acetylornithine transaminase	99.87
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	99.87
PRK10874	401	cysteine sulfinate desulfinase; Provisional	99.87
PRK07049	427	methionine gamma-lyase; Validated	99.87
PTZ00125	400	ornithine aminotransferase-like protein; Provision	99.87
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	99.87
PRK10534	333	L-threonine aldolase; Provisional	99.87
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	99.86
PRK07505	402	hypothetical protein; Provisional	99.86
PLN02721	353	threonine aldolase	99.86
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	99.86
PRK07179	407	hypothetical protein; Provisional	99.86
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	99.86
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	99.86
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	99.86
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	99.85
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	99.85
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	99.85
COG1448	396	TyrB Aspartate/tyrosine/aromatic aminotransferase	99.85
PRK13393	406	5-aminolevulinate synthase; Provisional	99.85
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	99.84
PRK09792	421	4-aminobutyrate transaminase; Provisional	99.84
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	99.84
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	99.84
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	99.83
PRK04612	408	argD acetylornithine transaminase protein; Provisi	99.83
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	99.83
PLN02624	474	ornithine-delta-aminotransferase	99.83
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	99.83
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	99.83
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	99.83
PRK08247	366	cystathionine gamma-synthase; Reviewed	99.83
PRK06460	376	hypothetical protein; Provisional	99.82
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	99.82
PRK06767	386	methionine gamma-lyase; Provisional	99.81
PRK02948	381	cysteine desulfurase; Provisional	99.81
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	99.81
PLN02242	418	methionine gamma-lyase	99.81
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	99.8
PRK06234	400	methionine gamma-lyase; Provisional	99.8
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	99.8
cd00617	431	Tnase_like Tryptophanase family (Tnase). This fami	99.8
PRK08249	398	cystathionine gamma-synthase; Provisional	99.79
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	99.79
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	99.79
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	99.79
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	99.78
PRK07504	398	O-succinylhomoserine sulfhydrylase; Reviewed	99.78
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	99.78
PRK08045	386	cystathionine gamma-synthase; Provisional	99.78
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	99.78
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	99.78
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	99.78
PRK08776	405	cystathionine gamma-synthase; Provisional	99.77
PRK07582	366	cystathionine gamma-lyase; Validated	99.77
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	99.77
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	99.77
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	99.77
TIGR02080	382	O_succ_thio_ly O-succinylhomoserine (thiol)-lyase.	99.77
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	99.76
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	99.76
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	99.76
PRK08861	388	cystathionine gamma-synthase; Provisional	99.76
PF04864	363	Alliinase_C: Allinase; InterPro: IPR006948 Allicin	99.76
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	99.75
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	99.75
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	99.75
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	99.75
PRK07503	403	methionine gamma-lyase; Provisional	99.74
PRK07811	388	cystathionine gamma-synthase; Provisional	99.74
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	99.74
PRK07269	364	cystathionine gamma-synthase; Reviewed	99.74
PLN02409	401	serine--glyoxylate aminotransaminase	99.74
PLN02955	476	8-amino-7-oxononanoate synthase	99.74
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	99.74
PRK13520	371	L-tyrosine decarboxylase; Provisional	99.73
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	99.73
KOG1360	570	consensus 5-aminolevulinate synthase [Coenzyme tra	99.73
PRK08574	385	cystathionine gamma-synthase; Provisional	99.72
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	99.71
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	99.71
PRK08064	390	cystathionine beta-lyase; Provisional	99.71
PRK09028	394	cystathionine beta-lyase; Provisional	99.7
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	99.7
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	99.7
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	99.69
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	99.69
TIGR01329	378	cysta_beta_ly_E cystathionine beta-lyase, eukaryot	99.69
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	99.68
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	99.68
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	99.68
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	99.68
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	99.68
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	99.67
PRK05968	389	hypothetical protein; Provisional	99.67
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	99.67
PRK07671	377	cystathionine beta-lyase; Provisional	99.67
PRK13580	493	serine hydroxymethyltransferase; Provisional	99.67
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	99.67
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	99.66
PRK05939	397	hypothetical protein; Provisional	99.66
PRK06541	460	hypothetical protein; Provisional	99.66
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	99.65
KOG1412	410	consensus Aspartate aminotransferase/Glutamic oxal	99.65
PRK00451	447	glycine dehydrogenase subunit 1; Validated	99.65
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	99.64
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	99.64
PRK03715	395	argD acetylornithine transaminase protein; Provisi	99.64
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	99.63
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	99.63
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	99.63
PRK06702	432	O-acetylhomoserine aminocarboxypropyltransferase;	99.62
PRK07050	394	cystathionine beta-lyase; Provisional	99.62
PRK05967	395	cystathionine beta-lyase; Provisional	99.6
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	99.6
PLN02760	504	4-aminobutyrate:pyruvate transaminase	99.6
PLN02509	464	cystathionine beta-lyase	99.6
PRK14012	404	cysteine desulfurase; Provisional	99.59
PRK07678	451	aminotransferase; Validated	99.58
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	99.58
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	99.58
KOG1402	427	consensus Ornithine aminotransferase [Amino acid t	99.58
PRK07812	436	O-acetylhomoserine aminocarboxypropyltransferase;	99.57
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	99.56
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	99.56
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	99.56
PRK06105	460	aminotransferase; Provisional	99.55
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	99.54
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	99.54
KOG1359	417	consensus Glycine C-acetyltransferase/2-amino-3-ke	99.54
PRK05965	459	hypothetical protein; Provisional	99.54
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	99.54
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	99.54
KOG1411	427	consensus Aspartate aminotransferase/Glutamic oxal	99.53
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	99.53
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	99.53
COG0161	449	BioA Adenosylmethionine-8-amino-7-oxononanoate ami	99.53
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	99.52
COG0626	396	MetC Cystathionine beta-lyases/cystathionine gamma	99.52
PRK12403	460	putative aminotransferase; Provisional	99.51
PRK08297	443	L-lysine aminotransferase; Provisional	99.51
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	99.51
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	99.51
PRK07482	461	hypothetical protein; Provisional	99.5
PRK07483	443	hypothetical protein; Provisional	99.5
PRK08114	395	cystathionine beta-lyase; Provisional	99.5
PRK07480	456	putative aminotransferase; Validated	99.5
PRK06062	451	hypothetical protein; Provisional	99.49
PLN02651	364	cysteine desulfurase	99.49
PTZ00094	452	serine hydroxymethyltransferase; Provisional	99.49
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	99.49
PRK13034	416	serine hydroxymethyltransferase; Reviewed	99.49
PRK06149	972	hypothetical protein; Provisional	99.49
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	99.47
PRK08134	433	O-acetylhomoserine aminocarboxypropyltransferase;	99.47
PRK07481	449	hypothetical protein; Provisional	99.47
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	99.46
KOG0053	409	consensus Cystathionine beta-lyases/cystathionine	99.46
PRK07036	466	hypothetical protein; Provisional	99.45
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	99.45
PRK06917	447	hypothetical protein; Provisional	99.45
TIGR01814	406	kynureninase kynureninase. This model describes ky	99.44
PRK06148	1013	hypothetical protein; Provisional	99.44
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	99.43
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	99.42
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	99.42
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	99.41
PRK04366	481	glycine dehydrogenase subunit 2; Validated	99.41
PRK07046	453	aminotransferase; Validated	99.41
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	99.41
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	99.41
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	99.4
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	99.4
PLN03226	475	serine hydroxymethyltransferase; Provisional	99.4
KOG1368	384	consensus Threonine aldolase [Amino acid transport	99.4
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	99.37
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	99.37
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	99.36
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	99.35
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	99.35
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	99.34
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	99.33
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	99.33
KOG1404	442	consensus Alanine-glyoxylate aminotransferase AGT2	99.32
PRK03080	378	phosphoserine aminotransferase; Provisional	99.3
COG2873	426	MET17 O-acetylhomoserine sulfhydrylase [Amino acid	99.29
PRK06434	384	cystathionine gamma-lyase; Validated	99.29
KOG1357	519	consensus Serine palmitoyltransferase [Posttransla	99.28
TIGR03531	444	selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr	99.25
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	99.25
TIGR01366	361	serC_3 phosphoserine aminotransferase, putative. T	99.25
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	99.2
TIGR01364	349	serC_1 phosphoserine aminotransferase. This model	99.19
PRK05355	360	3-phosphoserine/phosphohydroxythreonine aminotrans	99.17
PRK13237	460	tyrosine phenol-lyase; Provisional	99.17
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	99.14
TIGR02618	450	tyr_phenol_ly tyrosine phenol-lyase. This model de	99.13
PLN02724	805	Molybdenum cofactor sulfurase	99.1
KOG1401	433	consensus Acetylornithine aminotransferase [Amino	99.04
PF00464	399	SHMT: Serine hydroxymethyltransferase; InterPro: I	99.03
PLN02271	586	serine hydroxymethyltransferase	99.02
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	99.02
PRK04311	464	selenocysteine synthase; Provisional	98.98
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	98.94
PLN02880	490	tyrosine decarboxylase	98.9
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	98.9
KOG1403	452	consensus Predicted alanine-glyoxylate aminotransf	98.9
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	98.89
COG0112	413	GlyA Glycine/serine hydroxymethyltransferase [Amin	98.89
PLN02414	993	glycine dehydrogenase (decarboxylating)	98.88
PF00202	339	Aminotran_3: Aminotransferase class-III; InterPro:	98.85
KOG1358	467	consensus Serine palmitoyltransferase [Posttransla	98.79
PRK02769	380	histidine decarboxylase; Provisional	98.76
PLN02590	539	probable tyrosine decarboxylase	98.76
KOG1549	428	consensus Cysteine desulfurase NFS1 [Amino acid tr	98.75
PRK12566	954	glycine dehydrogenase; Provisional	98.74
PLN02452	365	phosphoserine transaminase	98.72
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	98.69
TIGR00474	454	selA seryl-tRNA(sec) selenium transferase. In bact	98.68
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	98.63
PRK05367	954	glycine dehydrogenase; Provisional	98.6
PF01276	417	OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain;	98.58
PRK15029	755	arginine decarboxylase; Provisional	98.57
KOG1405	484	consensus 4-aminobutyrate aminotransferase [Amino	98.55
TIGR02617	467	tnaA_trp_ase tryptophanase, leader peptide-associa	98.53
KOG2862	385	consensus Alanine-glyoxylate aminotransferase AGT1	98.5
PRK05367	954	glycine dehydrogenase; Provisional	98.5
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	98.45
PRK12462	364	phosphoserine aminotransferase; Provisional	98.38
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	98.38
TIGR01365	374	serC_2 phosphoserine aminotransferase, Methanosarc	98.34
COG1103	382	Archaea-specific pyridoxal phosphate-dependent enz	98.32
PLN03032	374	serine decarboxylase; Provisional	98.28
KOG2467	477	consensus Glycine/serine hydroxymethyltransferase	98.22
PLN02414	993	glycine dehydrogenase (decarboxylating)	98.2
PRK15400	714	lysine decarboxylase CadA; Provisional	98.17
COG3844	407	Kynureninase [Amino acid transport and metabolism]	98.15
PRK15399	713	lysine decarboxylase LdcC; Provisional	98.12
COG0076	460	GadB Glutamate decarboxylase and related PLP-depen	98.11
PRK13578	720	ornithine decarboxylase; Provisional	98.02
PLN02263	470	serine decarboxylase	98.02
COG3033	471	TnaA Tryptophanase [Amino acid transport and metab	97.99
KOG1383	491	consensus Glutamate decarboxylase/sphingosine phos	97.93
COG1982	557	LdcC Arginine/lysine/ornithine decarboxylases [Ami	97.69
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	97.67
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	97.64
PF05889	389	SLA_LP_auto_ag: Soluble liver antigen/liver pancre	97.56
COG1932	365	SerC Phosphoserine aminotransferase [Coenzyme meta	97.48
PF06838	403	Met_gamma_lyase: Methionine gamma-lyase ; InterPro	97.45
PF00282	373	Pyridoxal_deC: Pyridoxal-dependent decarboxylase c	97.43
PF03841	367	SelA: L-seryl-tRNA selenium transferase; InterPro:	97.27
KOG0628	511	consensus Aromatic-L-amino-acid/L-histidine decarb	97.26
COG1921	395	SelA Selenocysteine synthase [seryl-tRNASer seleni	97.09
KOG0629	510	consensus Glutamate decarboxylase and related prot	96.89
PF02347	429	GDC-P: Glycine cleavage system P-protein; InterPro	96.44
PRK12566	954	glycine dehydrogenase; Provisional	96.4
KOG2790	370	consensus Phosphoserine aminotransferase [Coenzyme	95.41
COG0403	450	GcvP Glycine cleavage system protein P (pyridoxal-	93.38
COG4100	416	Cystathionine beta-lyase family protein involved i	93.38
COG1003	496	GcvP Glycine cleavage system protein P (pyridoxal-	93.34
KOG3843	432	consensus Predicted serine hydroxymethyltransferas	92.38
TIGR03811	608	tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu	83.59

>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=3.2e-45  Score=309.50  Aligned_cols=229  Identities=25%  Similarity=0.381  Sum_probs=202.2

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEcc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGS   76 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s   76 (246)
                      |.+++.++++    ++|+||||||.+++++++++|+++|++||++||+||+|.++.|++..+.++..+.+ .+++|.+.|
T Consensus       154 ~~l~~~i~~ktk~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s  233 (393)
T COG0436         154 EDLEAAITPKTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINS  233 (393)
T ss_pred             HHHHhhcCccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEec
Confidence            5677777875    99999999999999999999999999999999999999999999865556655554 578999999


Q ss_pred             cccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHH
Q 042445           77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADKCC  154 (246)
Q Consensus        77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~  154 (246)
                      |||.|+++|||+||+++++.       ++++.+...+. .+++++.+.|.++..+|+... ....+..++.+++||+.+.
T Consensus       234 ~SK~~~mtGwRvG~~v~~~~-------~l~~~~~~~~~~~~~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l~  306 (393)
T COG0436         234 FSKTYGMTGWRIGWVVGPPE-------ELIAALRKLKSYLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLV  306 (393)
T ss_pred             ccccccccccceeEeecChH-------HHHHHHHHHHHhcccCCCHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999942       88888875544 455899999999999999754 3688888899999999999


Q ss_pred             HHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCC---CeEEEEeecChHHHHHH
Q 042445          155 DRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLK---DWLRITFAVEPSALENG  231 (246)
Q Consensus       155 ~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~---~~iRls~~~~~~~l~~~  231 (246)
                      +.|.+++|+.++..|+|++|+|++++..     .++.+++.++|+++||.|.||..|+.+   +++|+|++.+++.++++
T Consensus       307 ~~l~~~~g~~~~~~p~Ga~Y~~~~i~~~-----~d~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRis~~~~~~~l~~a  381 (393)
T COG0436         307 EALNEIGGLSVVKPPEGAFYLFPKIPEL-----LDSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLSLATSEETLEEA  381 (393)
T ss_pred             HHHHhcCCeeeccCCCeeEEEEeecCCC-----CCHHHHHHHHHHhCCEEEecccccCCCCCCCeEEEEEecCHHHHHHH
Confidence            9999988888655699999999999864     268999999999999999999999974   89999999988999999


Q ss_pred             HHHHHHHHHHH
Q 042445          232 LGRMKAFYDRH  242 (246)
Q Consensus       232 ~~~l~~~~~~~  242 (246)
                      ++++.++++..
T Consensus       382 ~~rl~~~~~~~  392 (393)
T COG0436         382 LRRLARFLAEY  392 (393)
T ss_pred             HHHHHHHHHhc
Confidence            99999998764

>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=3.5e-44  Score=286.82  Aligned_cols=244  Identities=54%  Similarity=0.918  Sum_probs=228.6

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.+.++    +++|||||+|.++|.+-+++|+++|+++++.||.||+|.++.|++.++.++..+.....+++++|+
T Consensus       190 ~~veal~DENT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssiVPVitlggi  269 (447)
T KOG0259|consen  190 DGVEALADENTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSIVPVITLGGI  269 (447)
T ss_pred             HHHHHhhccCeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhccccCceEeeccc
Confidence            3455555554    999999999999999999999999999999999999999999999999999999988899999999


Q ss_pred             ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRL  157 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L  157 (246)
                      ||.|..||||+||++..+...++.++..+..+.+..+.+.+++.+.|.|+-.+|....+++.......++.+.+...+.|
T Consensus       270 sKrW~VPGWRlGWi~~hD~~gvf~~~~~~q~~~~~~~~~~~p~TiiQ~AlP~IL~kTp~efF~k~~~~lk~na~l~y~~L  349 (447)
T KOG0259|consen  270 SKRWIVPGWRLGWIALHDPRGVFRDTKVVQGIKNFLDIIPGPATIIQGALPDILEKTPEEFFDKKLSFLKSNADLCYSRL  349 (447)
T ss_pred             ccccccCCceeeeEEEecccccccchHHHHHHHHHHhccCCccHhHHHHhHHHHHhChHHHHHHHHHHHHhhHHHHHHHH
Confidence            99999999999999999999999988888899998887779999999999999998778999999999999999999999


Q ss_pred             hcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHH
Q 042445          158 KEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKA  237 (246)
Q Consensus       158 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~  237 (246)
                      +++|++.+...|+|.+|+|+.++...+..+.++.+++.++.+++.+.+.||..|+.++|+|++++.+.++++++++||++
T Consensus       350 k~IP~l~cp~kPeg~mylmv~l~~s~~~~~~dD~dFc~kL~~Eesv~~LPG~af~~~nw~Ri~i~~~~~~leea~~Rik~  429 (447)
T KOG0259|consen  350 KDIPCLTCPVKPEGCMYLMVKLNLSLFPDIEDDVDFCQKLAREESVICLPGQAFGLKNWLRIVITVEEEMLEEAFSRIKE  429 (447)
T ss_pred             hcCCCcccCcCCCcceEEEeccchhhhccccccHHHHHHHhhhcceEEeccccccCCCeEEEEEccChHHHHHHHHHHHH
Confidence            99999998899999999999998877777788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhc
Q 042445          238 FYDRHAEK  245 (246)
Q Consensus       238 ~~~~~~~~  245 (246)
                      +.+++.++
T Consensus       430 Fc~RH~~~  437 (447)
T KOG0259|consen  430 FCDRHSKE  437 (447)
T ss_pred             HHHhhhhc
Confidence            99998754

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=100.00  E-value=5.4e-43  Score=300.75  Aligned_cols=244  Identities=59%  Similarity=1.006  Sum_probs=200.4

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      |.+++.++++    +++|||||||.+++.+++++|+++|+++|++||+||+|.++.|++..+.++..+....++|+++||
T Consensus       181 ~~l~~~~~~~~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~  260 (430)
T PLN00145        181 EGVEALADENTVAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVAPVLTLGSI  260 (430)
T ss_pred             HHHHHHhCcCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcccCcEEEEecc
Confidence            3445544443    999999999999999999999999999999999999999999876556666666666789999999


Q ss_pred             ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRL  157 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L  157 (246)
                      ||.|++||+|+||++++++..++...+++..++.....+.+++.+.|.++..+|....+.++++.++.++++++.+.+.|
T Consensus       261 SK~~~~pG~RlG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L  340 (430)
T PLN00145        261 SKRWVVPGWRLGWIATCDPNGILKETKVVDSIRNYLNISTDPATFVQGAIPQIIANTKEEFFTKTLGLLKETADICYEKI  340 (430)
T ss_pred             ccccCCCCeeEEEEEEecchhhhhhhHHHHHHHHHhcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999985432222111123445555444446788999999999986557899999999999999999999


Q ss_pred             hcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHH
Q 042445          158 KEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKA  237 (246)
Q Consensus       158 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~  237 (246)
                      ++++++.++..|+||+|+|++++...+++..++.+++.++++++||.+.||..|+.++|+|++++.+++.+++++++|.+
T Consensus       341 ~~~~g~~~~~~P~ga~y~~v~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~lRis~~~~~~~l~~al~rl~~  420 (430)
T PLN00145        341 KEIKCITCPHKPEGSMFVMVKLDLSCLSGIKDDMDFCCKLAKEESVVVLPGSALGMKNWLRITFAIDPPSLEDGLERLKS  420 (430)
T ss_pred             hcCCCCCCCcCCCeeeEEEeccChhhcCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEeCCCHHHHHHHHHHHHH
Confidence            99888875457999999999987533223335778888999999999999999998999999999999999999999999


Q ss_pred             HHHHHhhc
Q 042445          238 FYDRHAEK  245 (246)
Q Consensus       238 ~~~~~~~~  245 (246)
                      ++.+++++
T Consensus       421 ~~~~~~~~  428 (430)
T PLN00145        421 FCLRHAKL  428 (430)
T ss_pred             HHHHhccc
Confidence            99988765

>PLN02187 rooty/superroot1

Probab=100.00  E-value=8.8e-42  Score=295.18  Aligned_cols=241  Identities=46%  Similarity=0.827  Sum_probs=194.4

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      |.+++.++++    +++|||||||.+++.+++++|+++|++||++||+||+|.++.|++..+.++..+....++|+++||
T Consensus       195 ~~l~~~~~~~~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~vi~l~Sf  274 (462)
T PLN02187        195 EGIEAIADENTVAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLAGI  274 (462)
T ss_pred             HHHHHhcCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhccCCcEEEEecc
Confidence            3455555443    999999999999999999999999999999999999999999876555566556555579999999


Q ss_pred             ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhh---cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNI---SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCC  154 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~  154 (246)
                      ||.|++||+|+||++++++..++   ++++.+......   +.+++.+.|.++.++|.+..+.|+++.++.++++++.+.
T Consensus       275 SK~f~~pGlRiG~~v~~~p~~~~---~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~~~~l~~~~~~l~~~r~~l~  351 (462)
T PLN02187        275 SKGWVVPGWKIGWIALNDPEGVF---ETTKVLQSIKQNLDVTPDPATIIQAALPAILEKADKNFFAKKNKILKHNVDLVC  351 (462)
T ss_pred             hhhcCCccceeEEEEecCchhHH---HHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999986531111   133455444332   224589999999999986457899999999999999999


Q ss_pred             HHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHH
Q 042445          155 DRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGR  234 (246)
Q Consensus       155 ~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~  234 (246)
                      +.|++++++..+..|+||+|+|++++....++..++.+++..+++++||.+.||..|+.++|+|++++.+++++++++++
T Consensus       352 ~~L~~~~~~~~~~~P~gg~fl~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~iRis~~~~~e~l~~al~r  431 (462)
T PLN02187        352 DRLKDIPCVVCPKKPESCTYLLTKLELSLMDNIKDDIDFCVKLAREENLVFLPGDALGLKNWMRITIGVEAHMLEDALER  431 (462)
T ss_pred             HHHhhCCCCcCCCCCCEeEEEEeecChhhCCCCCCHHHHHHHHHhhCCEEEECccccCCCCeEEEEeCCCHHHHHHHHHH
Confidence            99999865543457899999999886422112224667888899999999999999988999999999999999999999


Q ss_pred             HHHHHHHHhhc
Q 042445          235 MKAFYDRHAEK  245 (246)
Q Consensus       235 l~~~~~~~~~~  245 (246)
                      |.++++++.++
T Consensus       432 L~~~l~~~~~~  442 (462)
T PLN02187        432 LKGFCTRHAKK  442 (462)
T ss_pred             HHHHHHHhhhc
Confidence            99999888754

>PLN02656 tyrosine transaminase

Probab=100.00  E-value=1.4e-41  Score=290.85  Aligned_cols=235  Identities=63%  Similarity=1.060  Sum_probs=195.2

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      ++++||||||.++|.+++++|+++|+++|++||+||+|.++.+++..+.++..++...++|+++||||.|++||+|+||+
T Consensus       174 ~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRiG~~  253 (409)
T PLN02656        174 VIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLGSLSKRWIVPGWRLGWF  253 (409)
T ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcccCcEEEEcccchhccCcceeEEEE
Confidence            88999999999999999999999999999999999999999998755555555555668999999999999999999999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG  171 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~  171 (246)
                      +++++...+.++++++.+........+++.+.|.++..+|++..+.++++.++.++++++.+.+.|++++++..+..|+|
T Consensus       254 i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~~p~g  333 (409)
T PLN02656        254 VTTDPSGSFRDPKIVERIKKYFDILGGPATFIQAAVPTILEQTDESFFKKTINILKQSSDICCDRIKEIPCITCPHKPEG  333 (409)
T ss_pred             EEeCcccccccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCcCCCe
Confidence            99642111111167788876654444689999999999998655788999999999999999999998865543458999


Q ss_pred             ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHHHHHHhhcC
Q 042445          172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRHAEKQ  246 (246)
Q Consensus       172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~~~~~~~~  246 (246)
                      |+|+|++++.....+..++.+++..+++++||.+.||+.|+.++++|++++.+++++++++++|.+++.++..+|
T Consensus       334 g~~~w~~l~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~fg~~~~iRi~~~~~~e~l~eal~rl~~~~~~~~~~~  408 (409)
T PLN02656        334 SMAVMVKLNLSLLEDISDDIDFCFKLAREESVIILPGTAVGLKNWLRITFAADPSSLEEALGRIKSFYLRHSKTQ  408 (409)
T ss_pred             EEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEEecchhcCCCCeEEEEeCCCHHHHHHHHHHHHHHHHHhcccc
Confidence            999999986432111223557778889999999999999988899999999999999999999999999887765

>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional

Probab=100.00  E-value=4.8e-41  Score=287.50  Aligned_cols=244  Identities=60%  Similarity=0.969  Sum_probs=190.9

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.++++    +++|||||||.++|.+++++|+++|++||++||+||+|.++.+++..+.++..+...+++|+++||
T Consensus       161 ~~l~~~~~~~~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~vi~~~Sf  240 (409)
T PLN00143        161 DAVEAIADENTIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFASIVPVITLGSI  240 (409)
T ss_pred             HHHHHhcccCCEEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhcccCcEEEEccc
Confidence            3444444432    889999999999999999999999999999999999999999876545555556666689999999


Q ss_pred             ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRL  157 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L  157 (246)
                      ||.|++||+|+||++++++..+...-+.++.+......+...+.+.|.++..+|.+....++++.++.++++++.+.+.|
T Consensus       241 SK~f~~pGlRvG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L  320 (409)
T PLN00143        241 SKRWMIPGWGLGWLVTCDPSGLLQICEIADSIKKALNPAPFPPTFIQAAIPEILEKTTEDFFSKTINILRAALAFCYDKL  320 (409)
T ss_pred             hhhcCCCccceEEEEeeCchhhhhhHHHHHHHHHHHhccCCCCchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999995421111000112333333322334588999999999986456789999999999999999999


Q ss_pred             hcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHH
Q 042445          158 KEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKA  237 (246)
Q Consensus       158 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~  237 (246)
                      +++++...+..|+||+|+|++++....++..++.+++..++.++||.+.||..|+.++++|++++.+++++++++++|.+
T Consensus       321 ~~~~~~~~~~~p~gg~f~w~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRi~~~~~~~~l~~al~rl~~  400 (409)
T PLN00143        321 KEIPCIMCPQKAEGAFFALVKLNLLLLEDIEDDMEFCLKLAKEESLIILPGVTVGLKNWLRITFAVEQSSLEDGLGRLKS  400 (409)
T ss_pred             hcCCCCCCCCCCCeeEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEEcCCHHHHHHHHHHHHH
Confidence            88765443347899999999987421111124677778888999999999999988999999999989999999999999


Q ss_pred             HHHHHhhc
Q 042445          238 FYDRHAEK  245 (246)
Q Consensus       238 ~~~~~~~~  245 (246)
                      +++++.++
T Consensus       401 ~l~~~~~~  408 (409)
T PLN00143        401 FCGRHAKK  408 (409)
T ss_pred             HHHHhccC
Confidence            99887653

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=100.00  E-value=3.4e-40  Score=281.96  Aligned_cols=228  Identities=32%  Similarity=0.609  Sum_probs=187.1

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      +++|||||||.+++.+++++|+++|+++|++||+||+|.++.+++..+.++..+.+..++|+++||||.|++||+|+||+
T Consensus       173 ~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~i  252 (401)
T TIGR01264       173 IVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLASLSSTVPILSCGGLAKRWLVPGWRLGWI  252 (401)
T ss_pred             EEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccccHHHcCCCCcEEEEccCcccCCCccceEEEE
Confidence            88899999999999999999999999999999999999999987655556656655556999999999999999999999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG  171 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~  171 (246)
                      ++++......  ++++.+........++|++.|.++..+|.+..+.++++.++.++++++.+.+.|++++++. +..|++
T Consensus       253 v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~-~~~p~~  329 (401)
T TIGR01264       253 IIHDRRGILR--DIRDGLVKLSQRILGPCTIVQGALPSILLRTPQEYFDGTLSVLESNAMLCYGALAAVPGLR-PVMPSG  329 (401)
T ss_pred             EecCcchhHH--HHHHHHHHHhhccCCCCcHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCc-ccCCCe
Confidence            9985211111  3445555443323478999999999999854478999999999999999999999987765 578999


Q ss_pred             ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHHHHHH
Q 042445          172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~~~~  242 (246)
                      |+|+|++++...+++..++.+++..+++++||.+.||..|+.++++|++++.+++++++++++|.++++++
T Consensus       330 g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~iRis~~~~~~~l~~~l~rl~~~~~~~  400 (401)
T TIGR01264       330 AMYMMVGIEMEHFPEFKNDVEFTERLVAEQSVFCLPGSCFEYPGFFRVVLTVPVVMMEEACSRIQEFCERH  400 (401)
T ss_pred             eeEEEEEecccccCCCCCHHHHHHHHHHhCCEEEeCchhcCCCCeEEEEEcCCHHHHHHHHHHHHHHHhcc
Confidence            99999998642111222466777777778999999999997789999999988899999999999998754

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>PTZ00433 tyrosine aminotransferase; Provisional

Probab=100.00  E-value=5.7e-40  Score=281.31  Aligned_cols=229  Identities=32%  Similarity=0.531  Sum_probs=188.5

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      +++|||||||.++|.+++++|+++|+++|++||+||+|.++.+++..+.++..+....++|+++||||.|++||+|+||+
T Consensus       182 ~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRlG~~  261 (412)
T PTZ00433        182 IMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDTTVPRVILGGTAKNLVVPGWRLGWL  261 (412)
T ss_pred             EEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccCCCceEEEccchhhcCCCCeeEEEE
Confidence            88899999999999999999999999999999999999999987654455555655456899999999999999999999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG  171 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~  171 (246)
                      +++++.....  ++++.+........++|++.|.++..++.+..+.++++.++.++++++.+.+.|++..++. +..|++
T Consensus       262 i~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~-~~~p~g  338 (412)
T PTZ00433        262 LLVDPHGNGG--DFLDGMKRLGMLVCGPCSVVQAALGEALLNTPQEHLEQIVAKLEEGAMVLYNHIGECIGLS-PTMPRG  338 (412)
T ss_pred             EEeCCcccHH--HHHHHHHHHhhccCCCChHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-ccCCCe
Confidence            9832111110  5777776654433478999999999999865578999999999999999999998865666 578999


Q ss_pred             ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHHHHHHh
Q 042445          172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~~~~~  243 (246)
                      |+|+|++++...+.+..++.+++..+++++||.+.||..|+.++++|++++.+++++++++++|.+++++++
T Consensus       339 g~f~~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~l~~al~~l~~~~~~~~  410 (412)
T PTZ00433        339 SMFLMSRLDLEKFRDIKSDVEFYEKLLEEENVQVLPGEIFHMPGFTRLTISRPVEVLREAVERIKAFCERHK  410 (412)
T ss_pred             eEEEEEEechhhcCCCCCHHHHHHHHHHhcCEEEeCccccCCCCeEEEEecCCHHHHHHHHHHHHHHHHHhc
Confidence            999999987532111123567777777789999999999988899999999888999999999999998765

>PRK06855 aminotransferase; Validated

Probab=100.00  E-value=8.2e-40  Score=281.58  Aligned_cols=229  Identities=19%  Similarity=0.328  Sum_probs=184.9

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      ++++||||||.++|.+++++|+++|++||++||+||+|.++.|++..+.++..+.+..++|+++||||.|++||+|+||+
T Consensus       176 ~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~~~~~I~~~S~SK~~~~pGlRiG~i  255 (433)
T PRK06855        176 LLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGDVPGIALKGISKELPWPGSRCGWI  255 (433)
T ss_pred             EEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcCcCCeEEEecCccccCCCcceEEEE
Confidence            78899999999999999999999999999999999999999987655556655544446899999999999999999999


Q ss_pred             EeeCCC--CCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhhcCCCCccccC
Q 042445           92 VTSDPN--GILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADKCCDRLKEIPCITCPKK  168 (246)
Q Consensus        92 ~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~  168 (246)
                      ++++..  ..+.  .+++.+........+++.+.|.++..++.++. +.++++.++.++++++.+.+.|++++++. +..
T Consensus       256 i~p~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~-~~~  332 (433)
T PRK06855        256 EVYNADKDEVFK--KYINSILNAKMIEVCSTTLPQMAIPRIMSHPEYKNYLKERNKRYEKRSNIAYEKLKDVPGLK-VNR  332 (433)
T ss_pred             EEeCCchhhHHH--HHHHHHHHhhccccCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCee-ccC
Confidence            985310  0000  33344433322333678999999999998654 78999999999999999999998887766 578


Q ss_pred             CCCceEEEEEeccccc--------c-------------C-CCChHHHHHHHHHhcCeEEecCCCcCC-CCeEEEEeec-C
Q 042445          169 PEGSMFVMVKLNYSLL--------E-------------G-INSDMEFALKLAKEESVIVLPGITVGL-KDWLRITFAV-E  224 (246)
Q Consensus       169 ~~~g~~~~~~~~~~~~--------~-------------~-~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~iRls~~~-~  224 (246)
                      |+||+|+|++++....        .             + ..++.+++..+++++||.+.||..|+. .+++|+|++. +
T Consensus       333 p~gg~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~PG~~F~~~~~~~Rls~~~~~  412 (433)
T PRK06855        333 TNGAFYMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTGICVVPLSSFCTELNGFRVTLLERD  412 (433)
T ss_pred             CCeeEEEeeccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHcCEEEecCCcCCCCCCceEEEECCCc
Confidence            9999999999975310        0             0 013667888889999999999999975 4679999996 9


Q ss_pred             hHHHHHHHHHHHHHHHHHh
Q 042445          225 PSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       225 ~~~l~~~~~~l~~~~~~~~  243 (246)
                      ++++++++++|.+++++..
T Consensus       413 ~~~i~~~~~~l~~~~~~~~  431 (433)
T PRK06855        413 EEKFEWIYQTLAEKIEEYL  431 (433)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            9999999999999998653

>PRK06207 aspartate aminotransferase; Provisional

Probab=100.00  E-value=1.3e-39  Score=278.23  Aligned_cols=218  Identities=20%  Similarity=0.300  Sum_probs=184.0

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccC-CcccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFG-SIVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      +++|||||||.++|.+++++|+++|++||++||+||+|.++.+++..+.++..+. ..+++++++||||.|++||+|+||
T Consensus       183 ~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lpGlRiG~  262 (405)
T PRK06207        183 LFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTESLSGYRLGV  262 (405)
T ss_pred             EECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhhccCcccceEE
Confidence            7999999999999999999999999999999999999999998775554444442 356899999999999999999999


Q ss_pred             EEeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445           91 LVTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKP  169 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~  169 (246)
                      +++++        ++++.+...... ..+.+.+.|.++..+++++ ..++++..+.++++++.+.+.|++++++. +..|
T Consensus       263 ii~~~--------~l~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~r~~l~~~L~~~~~~~-~~~p  332 (405)
T PRK06207        263 AFGSP--------AIIDRMEKLQAIVSLRAAGYSQAVLRTWFSEP-DGWMKDRIARHQAIRDDLLRVLRGVEGVF-VRAP  332 (405)
T ss_pred             EEcCH--------HHHHHHHHHHhHhccCCCHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHhcCCCce-ecCC
Confidence            99988        899999877543 3367888999999999852 45677778888899999999998877776 5678


Q ss_pred             CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHHHHHHHHHh
Q 042445          170 EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       170 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l~~~~~~~~  243 (246)
                      ++|+|+|++++...    .++.++...++.++||.+.||..|+.  ++++|++++.+++++++++++|.+++++++
T Consensus       333 ~gg~fl~~~l~~~~----~~~~~~~~~l~~~~gV~v~pG~~F~~~~~~~~Ris~~~~~~~l~~al~rl~~~l~~~~  404 (405)
T PRK06207        333 QAGSYLFPRLPRLA----VSLHDFVKILRLQAGVIVTPGTEFSPHTADSIRLNFSQDHAAAVAAAERIAQLIERYR  404 (405)
T ss_pred             CeeEEEEEeCcccC----CCHHHHHHHHHHhcCEEEeCchHhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHHhh
Confidence            99999999987421    13566766666689999999998865  789999999989999999999999998765

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=100.00  E-value=2.1e-39  Score=277.11  Aligned_cols=238  Identities=45%  Similarity=0.803  Sum_probs=193.3

Q ss_pred             hhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccc
Q 042445            3 LINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSIS   78 (246)
Q Consensus         3 ~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~s   78 (246)
                      .+++.+.++    ++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++..+.++..+....++|+++|||
T Consensus       161 ~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~S  240 (403)
T TIGR01265       161 GLEALADEKTVAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFASIVPVLSLGGIS  240 (403)
T ss_pred             HHHHHhCcCccEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhccCCcEEEEeecc
Confidence            444444443    8899999999999999999999999999999999999999998875556666666666899999999


Q ss_pred             cccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhh
Q 042445           79 KRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLK  158 (246)
Q Consensus        79 K~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~  158 (246)
                      |.|++||+|+||++++++...+. .++++.+........++|.+.|.++..++.+..+.++++.++.++++++.+.+.|+
T Consensus       241 K~~~~pGlRiG~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~  319 (403)
T TIGR01265       241 KRWVVPGWRLGWIIIHDPHGIFR-DTVLQGLKNLLQRILGPATIVQGALPDILENTPQEFFDGKISVLKSNAELCYEELK  319 (403)
T ss_pred             cccCCCcceEEEEEEeCchhhhH-HHHHHHHHHHhhhhcCCChHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999964211110 02455555554333478999999999999865578999999999999999999999


Q ss_pred             cCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHH
Q 042445          159 EIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAF  238 (246)
Q Consensus       159 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~  238 (246)
                      .++++. +..|++|+|+|++++.....+..++.+++..+++++||.+.||..|+.++++|++++.+++++++++++|.++
T Consensus       320 ~~~~~~-~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~iRis~~~~~~~l~~~l~~l~~~  398 (403)
T TIGR01265       320 DIPGLV-CPKPEGAMYLMVKLELELFPEIKDDVDFCEKLVREESVICLPGSAFGLPNWVRITITVPESMLEEACSRIKEF  398 (403)
T ss_pred             cCCCce-ecCCCceeEEEEeccccccCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEecCCHHHHHHHHHHHHHH
Confidence            887775 5689999999999875321111246677777788999999999999889999999998888999999999999


Q ss_pred             HHHH
Q 042445          239 YDRH  242 (246)
Q Consensus       239 ~~~~  242 (246)
                      ++++
T Consensus       399 ~~~~  402 (403)
T TIGR01265       399 CERH  402 (403)
T ss_pred             HHhc
Confidence            8765

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>PLN00175 aminotransferase family protein; Provisional

Probab=100.00  E-value=4.7e-39  Score=275.29  Aligned_cols=223  Identities=22%  Similarity=0.332  Sum_probs=187.7

Q ss_pred             hhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEccc
Q 042445            3 LINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGSI   77 (246)
Q Consensus         3 ~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~   77 (246)
                      .+++.+.++    ++++||||||.++|.+++++|+++|++||++||+||+|.++.+++. +.++..+.. .+++|+++||
T Consensus       179 ~l~~~~~~~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~-~~s~~~~~~~~~~vi~i~Sf  257 (413)
T PLN00175        179 ELKAAFTSKTRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGD-HISMASLPGMYERTVTMNSL  257 (413)
T ss_pred             HHHHhcCcCceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCc-ccChhhCCCCcCcEEEEecc
Confidence            445444433    8899999999999999999999999999999999999999998753 335544443 5689999999


Q ss_pred             ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDR  156 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  156 (246)
                      ||.|++||+|+||+++++        ++++.+..... ...++|++.|.++..+|+.+ +.++++.++.++++++.+.+.
T Consensus       258 SK~~~~~G~RiG~~v~~~--------~l~~~l~~~~~~~~~~~s~~~Q~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~  328 (413)
T PLN00175        258 GKTFSLTGWKIGWAIAPP--------HLTWGVRQAHSFLTFATATPMQWAAVAALRAP-ESYYEELKRDYSAKKDILVEG  328 (413)
T ss_pred             hhhccCcchheeeeEeCH--------HHHHHHHHHHhhccCCCCHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998        89998887754 34588999999999999853 678999999999999999999


Q ss_pred             hhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC-----CCeEEEEeecChHHHHHH
Q 042445          157 LKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-----KDWLRITFAVEPSALENG  231 (246)
Q Consensus       157 L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-----~~~iRls~~~~~~~l~~~  231 (246)
                      |++. ++. +..|+||+|+|++++..   +..++.+++..+++++||.+.||..|+.     ++++||+++.++++++++
T Consensus       329 L~~~-g~~-~~~p~g~~f~~~~~~~~---~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls~~~~~e~l~~~  403 (413)
T PLN00175        329 LKEV-GFK-VYPSSGTYFVMVDHTPF---GFENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFCKDEETLRAA  403 (413)
T ss_pred             HHHC-CCe-ecCCCeeEEEEEecccc---CCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEEEcCCHHHHHHH
Confidence            9987 666 56899999999987532   1113677888888889999999998852     579999999999999999


Q ss_pred             HHHHHHHHH
Q 042445          232 LGRMKAFYD  240 (246)
Q Consensus       232 ~~~l~~~~~  240 (246)
                      +++|.++++
T Consensus       404 ~~rL~~~~~  412 (413)
T PLN00175        404 VERMKTKLK  412 (413)
T ss_pred             HHHHHHHHh
Confidence            999999875

>PLN02607 1-aminocyclopropane-1-carboxylate synthase

Probab=100.00  E-value=4.7e-39  Score=276.77  Aligned_cols=222  Identities=20%  Similarity=0.313  Sum_probs=183.9

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCcccccc----C--C-cccEEEEcccccccccC
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVF----G--S-IVPLLTLGSISKRGIVP   84 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~----~--~-~~~~i~~~s~sK~~~~~   84 (246)
                      +++|||||||.++|.+++++|+++|+++|+++|+||+|..+.|++.++.++..+    +  . .+++++++||||.||++
T Consensus       205 ll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~fg~~  284 (447)
T PLN02607        205 LITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSLSKDLGLP  284 (447)
T ss_pred             EEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcccHHHHHhhcCCCCCcCcEEEEEcchhcCCCC
Confidence            889999999999999999999999999999999999999998886556665432    1  1 46899999999999999


Q ss_pred             CceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhch--HHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 042445           85 GLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTE--EEFFSKIIDILRETADKCCDRLKEIPC  162 (246)
Q Consensus        85 g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~  162 (246)
                      |+|+||+++.+.       +++..++....++ .+|.+.|.++..+|++..  +.++...+++++++++.+.+.|++. +
T Consensus       285 GlRvG~ivs~n~-------~l~~~~~~~~~~~-~~s~~~q~~~~~~L~d~~~~~~~l~~~r~~l~~~~~~~~~~L~~~-g  355 (447)
T PLN02607        285 GFRVGTIYSYND-------KVVTTARRMSSFT-LVSSQTQHLLASMLSDEEFTENYIRTNRERLRKRYEMIVQGLRRA-G  355 (447)
T ss_pred             cceEEEEEEcCH-------HHHHHHHHHhhcC-CCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-C
Confidence            999999999552       6667666554333 679999999999999754  4788999999999999999999987 6


Q ss_pred             CccccCCCCceEEEEEeccccccC-CCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeec-ChHHHHHHHHHHHHH
Q 042445          163 ITCPKKPEGSMFVMVKLNYSLLEG-INSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAV-EPSALENGLGRMKAF  238 (246)
Q Consensus       163 ~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~-~~~~l~~~~~~l~~~  238 (246)
                      +. +..|++|+|+|++++...-.. ...+.+++.++++++||.+.||..|+.  ++|+|++|+. +++.+++++++|.++
T Consensus       356 i~-~~~~~ag~fvw~~L~~~~~~~~~~~e~~l~~~ll~~~gV~v~pG~~f~~~~~g~fRi~fa~~~~~~l~~gl~Ri~~~  434 (447)
T PLN02607        356 IE-CLKGNAGLFCWMNLSPLLETPTREGELALWDSILREVKLNISPGSSCHCSEPGWFRVCFANMSEDTLEVALKRIHRF  434 (447)
T ss_pred             CC-cccCCeeEEEEEEchHhhcCCCchhHHHHHHHHHHhCCEEEcCccccCCCCCCEEEEEeccCCHHHHHHHHHHHHHH
Confidence            76 678999999999986421000 011335556777788999999999876  7999999996 899999999999999


Q ss_pred             HHHHh
Q 042445          239 YDRHA  243 (246)
Q Consensus       239 ~~~~~  243 (246)
                      +++.+
T Consensus       435 l~~~~  439 (447)
T PLN02607        435 MDRRK  439 (447)
T ss_pred             HHHHH
Confidence            98766

>PRK08636 aspartate aminotransferase; Provisional

Probab=100.00  E-value=8.2e-39  Score=273.50  Aligned_cols=219  Identities=21%  Similarity=0.278  Sum_probs=185.3

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      +++|||||||.++|.+++++|+++|++||++||+||+|.++.+++..+.++..++. .+++|+++||||.|++||+|+||
T Consensus       180 ~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~  259 (403)
T PRK08636        180 VVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTLSKSYNMAGWRVGF  259 (403)
T ss_pred             EEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCCccccEEEEEecccccCCccceeee
Confidence            88999999999999999999999999999999999999999987655556666644 35678899999999999999999


Q ss_pred             EEeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445           91 LVTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKP  169 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~  169 (246)
                      +++++        ++++.+...... ..+++.+.|.++..+++. .+.++++.++.++++++.+.+.|++. ++. +..|
T Consensus       260 iv~~~--------~li~~~~~~~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~-~~~p  328 (403)
T PRK08636        260 VVGNK--------KLVGALKKIKSWLDYGMFTPIQVAATIALDG-DQSCVEEIRETYRKRRDVLIESFANA-GWE-LQKP  328 (403)
T ss_pred             eeCCH--------HHHHHHHHHHHHhcccCChHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHC-CCc-ccCC
Confidence            99988        999988877543 346778888888877753 46789999999999999999999987 565 5789


Q ss_pred             CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHHHHHHHHHh
Q 042445          170 EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       170 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l~~~~~~~~  243 (246)
                      ++|+|+|++++... .+ .++.+++..+++++||.+.||..|+.  ++++|++++.+++++++++++|.++++.++
T Consensus       329 ~~g~~~~~~l~~~~-~~-~~~~~l~~~ll~~~gV~v~pg~~f~~~~~~~iRi~~~~~~~~l~~~~~rl~~~l~~~~  402 (403)
T PRK08636        329 RASMFVWAKIPEPA-RH-LGSLEFSKQLLTEAKVAVSPGIGFGEYGDEYVRIALIENENRIRQAARNIKKFLKELE  402 (403)
T ss_pred             CcceEEEEECCCcc-CC-CCHHHHHHHHHHhCCEEEecchhhCcCCCCeEEEEecCCHHHHHHHHHHHHHHHHhhc
Confidence            99999999987531 01 13567777778889999999999876  689999999889999999999999997753

>PRK05957 aspartate aminotransferase; Provisional

Probab=100.00  E-value=1.6e-38  Score=270.56  Aligned_cols=229  Identities=21%  Similarity=0.313  Sum_probs=190.3

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCcccccc-CCcccEEEEcc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVF-GSIVPLLTLGS   76 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~-~~~~~~i~~~s   76 (246)
                      |.+++.++++    ++++||||||.++|.+++++|+++|+++|+++|+||+|.++.+++....+...+ +...++|+++|
T Consensus       151 ~~l~~~i~~~~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S  230 (389)
T PRK05957        151 EAIEQAITPKTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYS  230 (389)
T ss_pred             HHHHHhcCcCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEEEEec
Confidence            4555555543    888999999999999999999999999999999999999999875443333333 44568999999


Q ss_pred             cccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445           77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD  155 (246)
Q Consensus        77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  155 (246)
                      |||.|+++|+|+||+++++        ++++++...... ..+++.+.|.++..++++ ...++++.++.++++++.+.+
T Consensus       231 ~SK~~g~~GlRiG~~~~~~--------~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~r~~l~~  301 (389)
T PRK05957        231 LSKAYGFASWRIGYMVIPI--------HLLEAIKKIQDTILICPPVVSQYAALGALQV-GKSYCQQHLPEIAQVRQILLK  301 (389)
T ss_pred             chhhccCccceeEEEecCH--------HHHHHHHHHHhhcccCCCcHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988        999999877543 346788999999999974 246788888889999999999


Q ss_pred             HhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeec-ChHHHHHHH
Q 042445          156 RLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAV-EPSALENGL  232 (246)
Q Consensus       156 ~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~-~~~~l~~~~  232 (246)
                      .|++++++..+..|+||+|+|++++...     ++.+++..+++++||.+.||..|+.  ++++|++++. +++++++++
T Consensus       302 ~L~~~~~~~~~~~~~gg~~~~~~~~~~~-----~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~l~~~~  376 (389)
T PRK05957        302 SLGQLQDRCTLHPANGAFYCFLKVNTDL-----NDFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYGALQKATAKEGI  376 (389)
T ss_pred             HHHhcCCCccccCCCeeEEEEEeCCCCC-----ChHHHHHHHHHHCCEEEccchhhCCCCCCEEEEEEecCCHHHHHHHH
Confidence            9998876533568899999999986432     4677878777789999999999876  5799999985 899999999


Q ss_pred             HHHHHHHHHHhh
Q 042445          233 GRMKAFYDRHAE  244 (246)
Q Consensus       233 ~~l~~~~~~~~~  244 (246)
                      ++|.++++++.+
T Consensus       377 ~~l~~~~~~~~~  388 (389)
T PRK05957        377 ERLVQGLKTIVQ  388 (389)
T ss_pred             HHHHHHHHhhhc
Confidence            999999988654

>PRK06107 aspartate aminotransferase; Provisional

Probab=100.00  E-value=9.6e-39  Score=272.97  Aligned_cols=230  Identities=20%  Similarity=0.353  Sum_probs=192.9

Q ss_pred             hhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHc-CCEEEEccccCCcccCCCCCccccccCC--cccEEEEc
Q 042445            3 LINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKL-GIMVIANEVYGHLAFGNTPFVSMGVFGS--IVPLLTLG   75 (246)
Q Consensus         3 ~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~--~~~~i~~~   75 (246)
                      .+++.+.++    ++++||||||.++|.+++++|+++|+++ ++++|+||+|.++.+++.++.++..+.+  .+++++++
T Consensus       158 ~l~~~~~~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~  237 (402)
T PRK06107        158 ALEAAITPRTRWLILNAPSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTN  237 (402)
T ss_pred             HHHhhcCcCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEe
Confidence            444444433    7889999999999999999999999998 9999999999999887655555555433  36899999


Q ss_pred             ccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 042445           76 SISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCC  154 (246)
Q Consensus        76 s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~  154 (246)
                      ||||.|++||+|+||+++++        ++++.+...... ..+++.+.|+++..+|++ .+.++++.++.++++++.+.
T Consensus       238 S~SK~~~~pGlRiG~~~~~~--------~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~  308 (402)
T PRK06107        238 GVSKTYAMTGWRIGYAAGPA--------DLIAAINKLQSQSSSCPSSISQAAAAAALNG-DQSFVTESVAVYKQRRDYAL  308 (402)
T ss_pred             ccchhhcCcccceeeeecCH--------HHHHHHHHHHHhcccCCChHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998        999998887553 447899999999999975 36789999999999999999


Q ss_pred             HHhhcCCCCccccCCCCceEEEEEeccc---ccc-C--CCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHH
Q 042445          155 DRLKEIPCITCPKKPEGSMFVMVKLNYS---LLE-G--INSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSAL  228 (246)
Q Consensus       155 ~~L~~~~~~~~~~~~~~g~~~~~~~~~~---~~~-~--~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l  228 (246)
                      +.|++++++. +..|+||+|+|++++..   ..+ +  ..++.+++..+++++||.+.||..|+..+++|++++.+++++
T Consensus       309 ~~L~~~~g~~-~~~p~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg~~~~iRis~~~~~e~l  387 (402)
T PRK06107        309 ALLNAIPGLS-CLVPDGAFYLYVNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAYGLSPYFRLSIATSLETL  387 (402)
T ss_pred             HHHhcCCCCc-ccCCCcceEEeeecccccccccccccCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEeCCCHHHH
Confidence            9999887776 57899999999987421   000 1  114567788888999999999999988899999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 042445          229 ENGLGRMKAFYDRH  242 (246)
Q Consensus       229 ~~~~~~l~~~~~~~  242 (246)
                      ++++++|.+++++.
T Consensus       388 ~~~l~~l~~~l~~~  401 (402)
T PRK06107        388 EEACARIERAVAAL  401 (402)
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999998764

>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional

Probab=100.00  E-value=1e-38  Score=280.27  Aligned_cols=237  Identities=19%  Similarity=0.384  Sum_probs=185.8

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      |.++..++++    +++|||||||.+++.+++++|+++|++||++||+||+|.++.+++..+.++..+.+...+++++||
T Consensus       272 ~~l~~~~~~~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~~~~~~~vi~~~S~  351 (517)
T PRK13355        272 DDIRSKITSRTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLAPDLFCVTFSGL  351 (517)
T ss_pred             HHHHHhcCcCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHHhCCCCeEEEEecc
Confidence            3455555543    899999999999999999999999999999999999999999987556666666554457889999


Q ss_pred             ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhch--HHHHHHHHHHHHHHHHHHHH
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTE--EEFFSKIIDILRETADKCCD  155 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~  155 (246)
                      ||.|+++|+|+||++++....+..  ++++.+........++|.++|.++..+|....  ..++.+.++. .++++.+.+
T Consensus       352 SK~~~~~G~RiG~~i~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~q~a~~~aL~~~~~~~~~~~~~~~~-~~~r~~l~~  428 (517)
T PRK13355        352 SKSHMIAGYRIGWMILSGNKRIAK--DYIEGLNMLANMRLCSNVPAQSIVQTALGGHQSVKDYLVPGGRV-YEQRELVYN  428 (517)
T ss_pred             hhhccCcccceEEEEeeCchhhHH--HHHHHHHHHhcCcCCcChHHHHHHHHHhcCCccHHHHHHHHHHH-HHHHHHHHH
Confidence            999999999999999763211110  23444443333334788999999999997432  4566665444 556899999


Q ss_pred             HhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHH
Q 042445          156 RLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLG  233 (246)
Q Consensus       156 ~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~  233 (246)
                      .|++++|+. +..|+|+||+|++++.... +..++.+++..+|.++||.|.||..|+.  ++++|++++.++++++++++
T Consensus       429 ~L~~~~g~~-~~~p~g~fy~~~~l~~~~~-~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~Ris~~~~~~~l~~a~~  506 (517)
T PRK13355        429 ALNAIPGIS-AVKPKAAFYIFPKIDVKKF-NIHDDEQFALDLLHDKKVLIVQGTGFNWDKPDHFRVVYLPRLEDLEDAMD  506 (517)
T ss_pred             HHhcCCCcc-cCCCCeeeEEEeecCcccC-CCCCHHHHHHHHHHhCCEEEeCcchhCCCCcCEEEEEeCCCHHHHHHHHH
Confidence            999888887 6889999999998874321 1124677888999999999999999974  78999999889999999999


Q ss_pred             HHHHHHHHHh
Q 042445          234 RMKAFYDRHA  243 (246)
Q Consensus       234 ~l~~~~~~~~  243 (246)
                      +|.++++.++
T Consensus       507 rl~~~~~~~~  516 (517)
T PRK13355        507 RLADFFSYYR  516 (517)
T ss_pred             HHHHHHHHhh
Confidence            9999998654

>PRK07681 aspartate aminotransferase; Provisional

Probab=100.00  E-value=1.2e-38  Score=272.27  Aligned_cols=210  Identities=23%  Similarity=0.334  Sum_probs=181.2

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      +++|||||||.++|.+++++|+++|++||++||+||+|.++.+++..+.++..++. .+++|+++||||.|++||+|+||
T Consensus       171 ~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~  250 (399)
T PRK07681        171 ILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYSLAGSRIGY  250 (399)
T ss_pred             EEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeecccccCCccceeEE
Confidence            88899999999999999999999999999999999999999987655545544443 46899999999999999999999


Q ss_pred             EEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445           91 LVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKP  169 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~  169 (246)
                      +++++        ++++.+..... ...++|.+.|.++..++.++ ..++++.++.++++++.+.+.|++. ++. +..|
T Consensus       251 ~i~~~--------~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~p  319 (399)
T PRK07681        251 MIGNE--------EIVRALTQFKSNTDYGVFLPIQKAACAALRNG-AAFCEKNRGIYQERRDTLVDGFRTF-GWN-VDKP  319 (399)
T ss_pred             EecCH--------HHHHHHHHHHhhcccCCCHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHC-CCc-ccCC
Confidence            99988        89998887654 34478999999999999863 4788999999999999999999987 665 5678


Q ss_pred             CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHHHH
Q 042445          170 EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKA  237 (246)
Q Consensus       170 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l~~  237 (246)
                      ++|+|+|++++...     ++.+++..+++++||.+.||..|+.  ++++|++++.+++++++++++|.+
T Consensus       320 ~~g~f~~~~l~~~~-----~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~~~~l~~l~~  384 (399)
T PRK07681        320 AGSMFVWAEIPKGW-----TSLSFAYALMDRANVVVTPGHAFGPHGEGFVRIALVQDEEVLQQAVENIRN  384 (399)
T ss_pred             CeeeEEEEECCCCC-----CHHHHHHHHHHhCCEEEeCChhhCcCCCCeEEEEecCCHHHHHHHHHHHHH
Confidence            99999999987532     4667777777779999999998875  579999999888999999999987

>PRK09148 aminotransferase; Validated

Probab=100.00  E-value=1.8e-38  Score=271.32  Aligned_cols=221  Identities=18%  Similarity=0.269  Sum_probs=187.5

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      ++++||||||.++|.+++++|+++|++||++||+||+|.++.+++..+.++..++. .+++++++||||.|++||+|+||
T Consensus       170 ~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~pGlR~G~  249 (405)
T PRK09148        170 IVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMAGWRMGF  249 (405)
T ss_pred             EEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEeccccccCCcchheee
Confidence            89999999999999999999999999999999999999999887655555544433 45688999999999999999999


Q ss_pred             EEeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445           91 LVTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKP  169 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~  169 (246)
                      +++++        ++++.+...... ..+++.+.|.++..+|.+ .+.++++.++.++++++.+.+.|+++ ++. +..|
T Consensus       250 ~v~~~--------~~i~~l~~~~~~~~~~~~~~~q~~~~~~L~~-~~~~~~~~~~~~~~~r~~l~~~L~~~-~~~-~~~p  318 (405)
T PRK09148        250 AVGNE--------RLIAALTRVKSYLDYGAFTPIQVAATAALNG-PQDCIAEMRELYKKRRDVLVESFGRA-GWD-IPPP  318 (405)
T ss_pred             eeCCH--------HHHHHHHHHHHHhccCCChHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHc-CCc-cCCC
Confidence            99988        899988877543 347789999999999974 36789999999999999999999987 565 5678


Q ss_pred             CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHHHHHHHHHhhc
Q 042445          170 EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKAFYDRHAEK  245 (246)
Q Consensus       170 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l~~~~~~~~~~  245 (246)
                      ++|+|+|++++... .+ .++.+++..+++++||.+.||..|+.  ++++|++++.+++++++++++|.+++.++.++
T Consensus       319 ~~g~f~~~~l~~~~-~~-~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ri~~~~~~~~l~~al~~l~~~l~~~~~~  394 (405)
T PRK09148        319 AASMFAWAPIPEAF-RH-LGSLEFSKLLVEKADVAVAPGVGFGEHGDGYVRIALVENEQRIRQAARNIKRFLSSADET  394 (405)
T ss_pred             CeeEEEEEECCCcc-CC-CCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999987431 00 13467777777889999999999875  58999999988999999999999999888765

>PRK07324 transaminase; Validated

Probab=100.00  E-value=2e-38  Score=268.40  Aligned_cols=222  Identities=21%  Similarity=0.363  Sum_probs=189.2

Q ss_pred             hhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccc
Q 042445            3 LINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSIS   78 (246)
Q Consensus         3 ~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~s   78 (246)
                      .+++.++++    ++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. +.++..  ..+++|+++|||
T Consensus       145 ~l~~~~~~~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~-~~s~~~--~~~~~I~~~s~S  221 (373)
T PRK07324        145 ELRRLVRPNTKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGS-TPSIAD--LYEKGISTNSMS  221 (373)
T ss_pred             HHHHhCCCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCC-CCChhh--ccCCEEEEecch
Confidence            444444443    8899999999999999999999999999999999999999988653 333322  245789999999


Q ss_pred             cccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh
Q 042445           79 KRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRL  157 (246)
Q Consensus        79 K~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L  157 (246)
                      |.|+++|+|+||+++++        ++++.++..... +.+++.++|.++..+++. .+.++++.++.++++++.+.+.|
T Consensus       222 K~~~~~G~RiG~i~~~~--------~li~~~~~~~~~~~~~~~~~~q~~a~~~l~~-~~~~l~~~~~~~~~~~~~l~~~l  292 (373)
T PRK07324        222 KTYSLPGIRVGWIAANE--------EVIDILRKYRDYTMICAGVFDDMLASLALEH-RDAILERNRKIVRTNLAILDEWV  292 (373)
T ss_pred             hhcCCccceeEEEecCH--------HHHHHHHHHhCcEEecCChHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999987        999999887653 347889999999988873 46789999999999999999999


Q ss_pred             hcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHH
Q 042445          158 KEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKA  237 (246)
Q Consensus       158 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~  237 (246)
                      ++.+++. +..|++|+|+|+.++...     ++.+++.++++++||.+.||..|+.++++|+|++.+++.+++++++|.+
T Consensus       293 ~~~~~~~-~~~p~gg~~~~i~~~~~~-----~~~~~~~~ll~~~gv~v~pg~~F~~~~~iRis~~~~~~~l~~~l~rl~~  366 (373)
T PRK07324        293 AKEPRVS-YVKPKAVSTSFVKLDVDM-----PSEDFCLKLLKETGVLLVPGNRFDLEGHVRIGYCCDTETLKKGLKKLSE  366 (373)
T ss_pred             hcCCCce-EECCCceEEEEEEeCCCC-----CHHHHHHHHHHhcCEEEECccccCCCCeEEEEecCCHHHHHHHHHHHHH
Confidence            9877776 578999999999887532     4778888888899999999999988899999999999999999999999


Q ss_pred             HHHHH
Q 042445          238 FYDRH  242 (246)
Q Consensus       238 ~~~~~  242 (246)
                      +++++
T Consensus       367 ~l~~~  371 (373)
T PRK07324        367 FLREF  371 (373)
T ss_pred             HHHhc
Confidence            99764

>PRK06348 aspartate aminotransferase; Provisional

Probab=100.00  E-value=2e-38  Score=269.56  Aligned_cols=222  Identities=26%  Similarity=0.443  Sum_probs=185.0

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEcc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGS   76 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s   76 (246)
                      |.+++.++++    ++++||||||.++|.+++++|+++|+++|++||+||+|.++.+++. +.++..+.. .+++|+++|
T Consensus       153 ~~l~~~~~~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~vi~~~S  231 (384)
T PRK06348        153 KKLEALITSKTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYED-FVPMATLAGMPERTITFGS  231 (384)
T ss_pred             HHHHHhhCcCccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCC-ccchhhcCCCcCcEEEEec
Confidence            3445544433    7789999999999999999999999999999999999999988753 334444432 568999999


Q ss_pred             cccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445           77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD  155 (246)
Q Consensus        77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  155 (246)
                      |||.|++||+|+||+++++        ++++.+..... ...+++++.|.++..++.. .+.++++.++.++++++.+.+
T Consensus       232 fSK~~~l~GlRiG~~v~~~--------~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~r~~~~~~  302 (384)
T PRK06348        232 FSKDFAMTGWRIGYVIAPD--------YIIETAKIINEGICFSAPTISQRAAIYALKH-RDTIVPLIKEEFQKRLEYAYK  302 (384)
T ss_pred             chhccCCccccceeeecCH--------HHHHHHHHHHHhccCCCCHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998        88888887654 2347899999999999974 477889999999999999999


Q ss_pred             HhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHH
Q 042445          156 RLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLG  233 (246)
Q Consensus       156 ~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~  233 (246)
                      .|++++++. +..|+||+|+|++++....    ++.+++..+++++||.+.||..|+.  .+++|++++.++++++++++
T Consensus       303 ~L~~~~~~~-~~~p~gg~~~~~~~~~~~~----~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~al~  377 (384)
T PRK06348        303 RIESIPNLS-LHPPKGSIYAFINIKKTGL----SSVEFCEKLLKEAHVLVIPGKAFGESGEGYIRLACTVGIEVLEEAFN  377 (384)
T ss_pred             HHhcCCCce-eccCCeeEEEEEecccCCC----CHHHHHHHHHHhCCEEEcCchhhccCCCCeEEEEecCCHHHHHHHHH
Confidence            999887765 5688999999999874211    4667777777789999999999976  68999999988999999999


Q ss_pred             HHHHH
Q 042445          234 RMKAF  238 (246)
Q Consensus       234 ~l~~~  238 (246)
                      +|.++
T Consensus       378 ~l~~~  382 (384)
T PRK06348        378 RIEKM  382 (384)
T ss_pred             HHHhh
Confidence            99764

>PLN02450 1-aminocyclopropane-1-carboxylate synthase

Probab=100.00  E-value=2.8e-38  Score=273.75  Aligned_cols=222  Identities=19%  Similarity=0.286  Sum_probs=181.3

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCcccccc---------CCcccEEEEcccccccc
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVF---------GSIVPLLTLGSISKRGI   82 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~---------~~~~~~i~~~s~sK~~~   82 (246)
                      +++|||||||.++|.+++++|+++|+++|++||+||+|.++.|++.++.+....         +..+++++++||||.|+
T Consensus       196 ~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~  275 (468)
T PLN02450        196 LITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLG  275 (468)
T ss_pred             EEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCCCCcccHHHHhhhcccccCCCCCcEEEEEeccccCC
Confidence            888999999999999999999999999999999999999998876444443211         23568999999999999


Q ss_pred             cCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhch--HHHHHHHHHHHHHHHHHHHHHhhcC
Q 042445           83 VPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTE--EEFFSKIIDILRETADKCCDRLKEI  160 (246)
Q Consensus        83 ~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~  160 (246)
                      +||+|+||+++++.       .+++.+...... ..+|.+.|.++..+|+++.  +.++++.++.++++++.+.+.|+++
T Consensus       276 l~GlRiG~li~~~~-------~l~~~~~~~~~~-~~~s~~~Q~a~~~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L~~~  347 (468)
T PLN02450        276 LPGFRVGAIYSNDE-------MVVSAATKMSSF-GLVSSQTQYLLSALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEAA  347 (468)
T ss_pred             CCCccEEEEEECCH-------HHHHHHHHHhhc-CCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            99999999999872       345655554433 3679999999999998753  3588999999999999999999988


Q ss_pred             CCCccccCCCCceEEEEEeccccc-cCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeec-ChHHHHHHHHHHH
Q 042445          161 PCITCPKKPEGSMFVMVKLNYSLL-EGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAV-EPSALENGLGRMK  236 (246)
Q Consensus       161 ~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~-~~~~l~~~~~~l~  236 (246)
                       |+. +..|++|+|+|++++...- ....+..+++..+++++||.+.||..|+.  ++|+|++++. +++++++++++|+
T Consensus       348 -gi~-~~~~~~g~flwi~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~f~~~~~g~~Rl~f~~~~~~~l~~~l~ri~  425 (468)
T PLN02450        348 -GIK-CLKSNAGLFCWVDMRHLLKSNTFEAEMELWKKIVYEVKLNISPGSSCHCTEPGWFRVCFANMSEETLDLAMKRLK  425 (468)
T ss_pred             -CCc-ccCCCceEEEEEEchHhcCcCCchHHHHHHHHHHHhCCEEEeCccccCCCCCCEEEEEecCCCHHHHHHHHHHHH
Confidence             676 5789999999999864210 01112345677778889999999998875  7899999995 8999999999999


Q ss_pred             HHHHHHh
Q 042445          237 AFYDRHA  243 (246)
Q Consensus       237 ~~~~~~~  243 (246)
                      +++.+..
T Consensus       426 ~~l~~~~  432 (468)
T PLN02450        426 SFVESDS  432 (468)
T ss_pred             HHHHhcc
Confidence            9987644

>PLN02376 1-aminocyclopropane-1-carboxylate synthase

Probab=100.00  E-value=4.5e-38  Score=273.53  Aligned_cols=222  Identities=18%  Similarity=0.284  Sum_probs=181.3

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC--------cccEEEEccccccccc
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS--------IVPLLTLGSISKRGIV   83 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~--------~~~~i~~~s~sK~~~~   83 (246)
                      +++|||||||.++|.+++++|+++|+++|++||+||+|.++.|++..+.++..+..        .+++++++||||.|++
T Consensus       204 ~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~gl  283 (496)
T PLN02376        204 ILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGL  283 (496)
T ss_pred             EEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCcccHHHhhccccccccCCCeEEEEEeccccCCC
Confidence            88999999999999999999999999999999999999999988765666544411        1357889999999999


Q ss_pred             CCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhch--HHHHHHHHHHHHHHHHHHHHHhhcCC
Q 042445           84 PGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTE--EEFFSKIIDILRETADKCCDRLKEIP  161 (246)
Q Consensus        84 ~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~  161 (246)
                      ||+|+||++++++       .+.+.++....++ .+|.+.|.++..+|+++.  +.++.+.++.++++++.+.+.|++. 
T Consensus       284 pGlRvG~li~~~~-------~l~~~~~~~~~~~-~vs~~~Q~a~~~~L~d~~~~~~~l~~~r~~l~~r~~~l~~~L~~~-  354 (496)
T PLN02376        284 PGFRVGIVYSFND-------SVVSCARKMSSFG-LVSSQTQLMLASMLSDDQFVDNFLMESSRRLGIRHKVFTTGIKKA-  354 (496)
T ss_pred             CcceEEEEEECCH-------HHHHHHHHHhhcC-CCCHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHC-
Confidence            9999999999762       5555555544444 689999999999998654  5778888999999999999999986 


Q ss_pred             CCccccCCCCceEEEEEeccccc--cCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeec-ChHHHHHHHHHHH
Q 042445          162 CITCPKKPEGSMFVMVKLNYSLL--EGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAV-EPSALENGLGRMK  236 (246)
Q Consensus       162 ~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~-~~~~l~~~~~~l~  236 (246)
                      ++. +..|++|+|+|++++...-  ....++.+++..++.+.||.+.||..|+.  ++|+|++|+. +++.+++++++|.
T Consensus       355 gi~-~~~~~aG~flwi~l~~~~~~~~~~~~e~~l~~~ll~~~gV~v~pGs~F~~~~~g~~Ri~fa~~~~~~l~~al~rl~  433 (496)
T PLN02376        355 DIA-CLTSNAGLFAWMDLRHLLRDRNSFESEIELWHIIIDKVKLNVSPGSSFRCTEPGWFRICFANMDDDTLHVALGRIQ  433 (496)
T ss_pred             CCc-ccCCCceEEEEEEchhhhccCCchhHHHHHHHHHHHcCCEEEeCccccCCCCCCEEEEEeeCCCHHHHHHHHHHHH
Confidence            666 5678999999999864210  00112356667777778999999999975  7899999995 8899999999999


Q ss_pred             HHHHHHh
Q 042445          237 AFYDRHA  243 (246)
Q Consensus       237 ~~~~~~~  243 (246)
                      +++.+.+
T Consensus       434 ~~l~~~~  440 (496)
T PLN02376        434 DFVSKNK  440 (496)
T ss_pred             HHHHHhh
Confidence            9997654

>PRK07682 hypothetical protein; Validated

Probab=100.00  E-value=2e-38  Score=269.17  Aligned_cols=224  Identities=22%  Similarity=0.310  Sum_probs=186.5

Q ss_pred             hhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEccc
Q 042445            3 LINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGSI   77 (246)
Q Consensus         3 ~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~   77 (246)
                      .+++.+.++    ++++||||||.++|.+++++|+++|++||+++|+||+|.++.+++. +.++..+.. .+++++++||
T Consensus       146 ~l~~~~~~~~~~v~~~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~~i~~~S~  224 (378)
T PRK07682        146 QIEAAITAKTKAILLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEA-YTSFASIKGMRERTILISGF  224 (378)
T ss_pred             HHHhhcCcccEEEEEECCCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCC-CCChhhcccccCCEEEEecC
Confidence            444444433    7889999999999999999999999999999999999999998763 334333332 4689999999


Q ss_pred             ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDR  156 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  156 (246)
                      ||.|++||+|+||+++++        ++++.+...... ..+++++.|.++..+|+++ +.++++.++.++++++.+.+.
T Consensus       225 SK~~~~~GlR~G~~~~~~--------~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~  295 (378)
T PRK07682        225 SKGFAMTGWRLGFIAAPV--------YFSEAMLKIHQYSMMCAPTMAQFAALEALRAG-NDDVIRMRDSYRKRRNFFVTS  295 (378)
T ss_pred             cccccChhhhhhhhhcCH--------HHHHHHHHHHHhhccCCCHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998        999988876443 3468899999999999853 456889999999999999999


Q ss_pred             hhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHH
Q 042445          157 LKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGR  234 (246)
Q Consensus       157 L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~  234 (246)
                      |+++ ++. +..|+||+|+|+.++...    .++.++...+++++||.+.||..|+.  ++++|+|++.+++++++++++
T Consensus       296 L~~~-~~~-~~~p~g~~~~~~~~~~~~----~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~l~~~l~~  369 (378)
T PRK07682        296 FNEI-GLT-CHVPGGAFYAFPSISSTG----LSSEEFAEQLLLEEKVAVVPGSVFGESGEGFIRCSYATSLEQLQEAMKR  369 (378)
T ss_pred             HHHC-CCc-cCCCCeeEEEEEeccCCC----CCHHHHHHHHHHhCCEEEcCchhhCcCCCCeEEEEeCCCHHHHHHHHHH
Confidence            9987 666 578999999999885321    14667777777789999999998875  689999999988999999999


Q ss_pred             HHHHHHHH
Q 042445          235 MKAFYDRH  242 (246)
Q Consensus       235 l~~~~~~~  242 (246)
                      |+++++++
T Consensus       370 l~~~l~~~  377 (378)
T PRK07682        370 MKRFVENK  377 (378)
T ss_pred             HHHHHhhc
Confidence            99998764

>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

Probab=100.00  E-value=5.9e-38  Score=252.46  Aligned_cols=228  Identities=22%  Similarity=0.322  Sum_probs=199.8

Q ss_pred             hhhhhhhccc-----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCc--ccEEEE
Q 042445            2 ELINQDITRE-----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSI--VPLLTL   74 (246)
Q Consensus         2 e~~~~~~~~~-----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~--~~~i~~   74 (246)
                      +.+++.+...     ++||||||||.+++.+++++|.++|.+||+.||+||+|+++.+.|..+.+...+.+.  ++.+++
T Consensus       148 ~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~  227 (388)
T COG1168         148 DALEKAFVDERVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITL  227 (388)
T ss_pred             HHHHHHHhcCCccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcceEEE
Confidence            4566665543     999999999999999999999999999999999999999999999777777777653  789999


Q ss_pred             cccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHh--hhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 042445           75 GSISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFL--NISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADK  152 (246)
Q Consensus        75 ~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~  152 (246)
                      .|.||.|+.+|+++++++.++.       ++.++..+..  ....++|.++..|..++.+. .+.|++++.+.++.|++.
T Consensus       228 ~saSKtFNlaGL~~a~~Ii~n~-------~lr~~~~~~l~~~~~~~~n~lg~~A~~aAY~~-G~~WLd~L~~yl~~N~~~  299 (388)
T COG1168         228 TSASKTFNLAGLKCAYIIISNR-------ELRAKFLKRLKRNGLHGPSALGIIATEAAYNQ-GEPWLDELLEYLKDNRDY  299 (388)
T ss_pred             eeccccccchhhhheeEEecCH-------HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHh-chHHHHHHHHHHHHHHHH
Confidence            9999999999999999999984       5555554442  23338899999999999996 589999999999999999


Q ss_pred             HHHHhhc-CCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHH
Q 042445          153 CCDRLKE-IPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALE  229 (246)
Q Consensus       153 l~~~L~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~  229 (246)
                      +.+.+.+ +|++. +..|+|.+.+|+++....+    ++.+....++.+.+|.+.+|..|+.  ++++|++++.+...++
T Consensus       300 ~~~~l~~~~P~v~-v~~p~gTYL~WLD~r~l~l----~d~~l~~~ll~~akVal~~G~~FG~~g~gf~RlN~acpr~~L~  374 (388)
T COG1168         300 VADFLNKHLPGVK-VTEPQGTYLAWLDCRELGL----DDSELAEFLLEEAKVALSPGSTFGEEGSGFVRLNFACPRAILE  374 (388)
T ss_pred             HHHHHHhhCCCcE-EecCCCceeeeeeccccCC----ChHHHHHHHHHhhcEeccCCCccCcCCCceEEEecCCCHHHHH
Confidence            9999987 89999 7899999999999987643    4567778889999999999999997  7999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 042445          230 NGLGRMKAFYDRH  242 (246)
Q Consensus       230 ~~~~~l~~~~~~~  242 (246)
                      +++++|.+++++.
T Consensus       375 eal~ri~~al~~~  387 (388)
T COG1168         375 EALERLKRALKKR  387 (388)
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999998753

>PRK07366 succinyldiaminopimelate transaminase; Validated

Probab=100.00  E-value=3e-38  Score=268.91  Aligned_cols=213  Identities=18%  Similarity=0.288  Sum_probs=173.3

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCC-CccccccCCc-ccEEEEcccccccccCCceEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTP-FVSMGVFGSI-VPLLTLGSISKRGIVPGLRLG   89 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~-~~~~~~~~~~-~~~i~~~s~sK~~~~~g~r~G   89 (246)
                      +++|||||||.++|.+++++|+++|++||++||+||+|.++.+++.. ..++..++.. +++|+++||||.||+||+|+|
T Consensus       170 ~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~~GlRiG  249 (388)
T PRK07366        170 VLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNMGGFRIG  249 (388)
T ss_pred             EEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeecccccCCcchhhe
Confidence            88999999999999999999999999999999999999999987643 4445555443 468999999999999999999


Q ss_pred             EEEeeCCCCCcchhhHHHHHHHHhhhc-CCC-CchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccc
Q 042445           90 WLVTSDPNGILQDSGIVDSIKIFLNIS-SDP-ATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPK  167 (246)
Q Consensus        90 ~i~~~~~~~~~~~~~~~~~l~~~~~~~-~~~-~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~  167 (246)
                      |+++++        ++++.+......+ .+. +.+.+.+ ...+.. .+.++++.++.++++++.+.+.|+++ ++. +.
T Consensus       250 ~~v~~~--------~li~~l~~~~~~~~~~~~~~~~~~a-~~~l~~-~~~~l~~~~~~~~~~r~~l~~~L~~~-~~~-~~  317 (388)
T PRK07366        250 FAIGNA--------QLIQALRQVKAVVDFNQYRGILNGA-IAALTG-PQATVQQTVQIFRQRRDAFINALHQI-GWP-VP  317 (388)
T ss_pred             ehcCCH--------HHHHHHHHHHhhcccCCCHHHHHHH-HHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHC-CCc-cc
Confidence            999988        8999988775532 233 2334444 444432 46889999999999999999999987 565 56


Q ss_pred             CCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHHHHHH
Q 042445          168 KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKAFY  239 (246)
Q Consensus       168 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l~~~~  239 (246)
                      .|++|+|+|++++...   ..++.+++..+++++||.+.||..|+.  ++|+|++++.+++++++++++|.+++
T Consensus       318 ~p~~g~f~~~~~~~~~---~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~~l~rl~~~l  388 (388)
T PRK07366        318 LPEATMYVWAKLPEPW---QGNSVEFCTQLVAQTGVAASPGSGFGKSGEGYVRFALVHDPDILEEAVERIAAFL  388 (388)
T ss_pred             CCCeeEEEEEECCccc---CCCHHHHHHHHHHhCCEEEeCchHhCcCCCCeEEEEecCCHHHHHHHHHHHHHhC
Confidence            7999999999987531   012566667777889999999999875  58999999988999999999998763

>PTZ00377 alanine aminotransferase; Provisional

Probab=100.00  E-value=6.3e-38  Score=273.18  Aligned_cols=225  Identities=20%  Similarity=0.282  Sum_probs=179.5

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCC-CCCcccc----ccCCc----ccEEEEcccccc-c
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGN-TPFVSMG----VFGSI----VPLLTLGSISKR-G   81 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~-~~~~~~~----~~~~~----~~~i~~~s~sK~-~   81 (246)
                      +++|||||||.++|.+++++|+++|++||++||+||+|.++.|++ .++.++.    .+.+.    .++|+++||||. +
T Consensus       223 ~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~  302 (481)
T PTZ00377        223 VVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGII  302 (481)
T ss_pred             EEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccc
Confidence            788999999999999999999999999999999999999999853 3444432    22221    368999999997 6


Q ss_pred             ccCCceEEEEEe---eCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhc---h---H---HHHHHHHHHHHHH
Q 042445           82 IVPGLRLGWLVT---SDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKT---E---E---EFFSKIIDILRET  149 (246)
Q Consensus        82 ~~~g~r~G~i~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~---~---~---~~~~~~~~~~~~~  149 (246)
                      ++||+|+||+++   ++        ++++.+........++|++.|.++..+++..   .   +   .++.+.++.++++
T Consensus       303 ~~~GlRiG~~~~~~~p~--------~li~~l~~~~~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r  374 (481)
T PTZ00377        303 GECGRRGGYFELTNIPP--------EVREQIYKLASINLCSNVVGQLMTGLMCNPPREGDASYPLYKRERDAIFTSLKRR  374 (481)
T ss_pred             cCCcCceEEEEEeCCCH--------HHHHHHHHHhheecCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHH
Confidence            899999999997   55        8888888775444478999999999999631   1   2   3344445568999


Q ss_pred             HHHHHHHhhcCCCCccccCCCCceEEEEEecccc-c------cCCCChHHHHHHHHHhcCeEEecCCCcCC---CCeEEE
Q 042445          150 ADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSL-L------EGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRI  219 (246)
Q Consensus       150 ~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~-~------~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~iRl  219 (246)
                      ++.+.+.|++++++. +..|+||+|+|++++... .      .+..++..++..+++++||.+.||+.|+.   ++++|+
T Consensus       375 r~~l~~~L~~~~g~~-~~~p~gg~fl~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~~~~Rl  453 (481)
T PTZ00377        375 AELLTDELNKIEGVS-CQPVEGAMYAFPRIELPEKAIQEAKERGLAPDVLYCLELLESTGIVVVPGSGFGQKPGTYHFRI  453 (481)
T ss_pred             HHHHHHHHhcCCCcE-eecCCeeEEEEeeccCchhhHHHHHhcCCCcHHHHHHHHHHHcCEEEeCCcccCCCCCCCEEEE
Confidence            999999999988877 578999999998775210 0      01112455678889999999999999974   469999


Q ss_pred             EeecChHHHHHHHHHHHHHHHHHhhc
Q 042445          220 TFAVEPSALENGLGRMKAFYDRHAEK  245 (246)
Q Consensus       220 s~~~~~~~l~~~~~~l~~~~~~~~~~  245 (246)
                      |++.+++++++++++|.++++++.++
T Consensus       454 s~~~~~e~l~~~l~rl~~~~~~~~~~  479 (481)
T PTZ00377        454 TILPPEEQIEEMVKKIKEFHESFMKK  479 (481)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHHHHh
Confidence            99988889999999999999887653

>PRK08960 hypothetical protein; Provisional

Probab=100.00  E-value=1.1e-37  Score=265.39  Aligned_cols=213  Identities=18%  Similarity=0.250  Sum_probs=180.2

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      ++++||||||.++|.+++++|+++|+++|+++|+||+|.++.+++. ..++...  .+++++++||||.||++|+|+||+
T Consensus       170 ~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~-~~~~~~~--~~~vi~~~S~SK~~g~~GlRiG~~  246 (387)
T PRK08960        170 LVASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVD-AASVLEV--DDDAFVLNSFSKYFGMTGWRLGWL  246 (387)
T ss_pred             EEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCC-CCChhhc--cCCEEEEeecccccCCcccEEEEE
Confidence            8889999999999999999999999999999999999999988653 2233333  358999999999999999999999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCC
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPE  170 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~  170 (246)
                      ++++        ++++.+..... ...++|.+.|.++..++.+..+.++++.++.++++++.+.+.|+++ ++..+..|+
T Consensus       247 ~~~~--------~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~L~~~-~~~~~~~p~  317 (387)
T PRK08960        247 VAPP--------AAVPELEKLAQNLYISASTPAQHAALACFEPETLAILEARRAEFARRRDFLLPALREL-GFGIAVEPQ  317 (387)
T ss_pred             EcCH--------HHHHHHHHHHhhhccCCCHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHhc-CCcCCcCCC
Confidence            9998        88988877644 3447799999999999975446899999999999999999999987 554345789


Q ss_pred             CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC---CCeEEEEeecChHHHHHHHHHHHHHHH
Q 042445          171 GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFAVEPSALENGLGRMKAFYD  240 (246)
Q Consensus       171 ~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~iRls~~~~~~~l~~~~~~l~~~~~  240 (246)
                      ||+|+|++++...    .++.+++..+++++||.+.||..|+.   ++++|++++.+.+.+++++++|.++++
T Consensus       318 g~~f~~~~~~~~~----~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~iRi~~~~~~~~l~~al~~l~~~~~  386 (387)
T PRK08960        318 GAFYLYADISAFG----GDAFAFCRHFLETEHVAFTPGLDFGRHQAGQHVRFAYTQSLPRLQEAVERIARGLR  386 (387)
T ss_pred             eeEEEEEeccccC----CCHHHHHHHHHHhCCEEEcCchHhCCCCCCCeEEEEecCCHHHHHHHHHHHHHHHh
Confidence            9999999987521    13667777778889999999999975   479999999988999999999998774

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=100.00  E-value=6.9e-38  Score=266.31  Aligned_cols=210  Identities=24%  Similarity=0.352  Sum_probs=179.4

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      +++|||||||.++|.+++++|+++|++||++||+||+|.++.+++....++..++. .+++|+++||||.||++|+|+||
T Consensus       169 ~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~  248 (383)
T TIGR03540       169 FINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTGWRIGM  248 (383)
T ss_pred             EEeCCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEecccccCCccceeeE
Confidence            88899999999999999999999999999999999999999887644555555543 45789999999999999999999


Q ss_pred             EEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445           91 LVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKP  169 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~  169 (246)
                      +++++        ++++.+..... ...+++.+.|.++..++.+. +.++++.++.++++++.+.+.|++. ++. +..|
T Consensus       249 ~i~~~--------~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~L~~~-~~~-~~~~  317 (383)
T TIGR03540       249 AVGNA--------DLIAGLGKVKTNVDSGVFQAIQYAAIAALNGP-QDVVKEIRKIYQRRRDLLLEALKKI-GID-VEKP  317 (383)
T ss_pred             EeCCH--------HHHHHHHHHHHhcccCCChHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHhC-CCE-ecCC
Confidence            99988        89988877644 33467889999999999853 7889999999999999999999987 666 5678


Q ss_pred             CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHHHH
Q 042445          170 EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKA  237 (246)
Q Consensus       170 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l~~  237 (246)
                      ++|+|+|++++...     ++.+++..+++++||.+.||..|+.  ++++||+++.+++.+++++++|.+
T Consensus       318 ~~~~~~~~~l~~~~-----~~~~~~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~~~~~~l~~~l~~l~~  382 (383)
T TIGR03540       318 KATFYVWVPVPEGY-----TSAEFAARLLEETGVVVTPGVGFGEYGEGYIRISLTVPDERLEEAVARIKK  382 (383)
T ss_pred             CcceEEEEECCCCC-----CHHHHHHHHHHHCCEEEecchhhCccCCCeEEEEecCCHHHHHHHHHHHhh
Confidence            89999999987432     4677777777889999999999875  579999999888899999988864

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>PRK08068 transaminase; Reviewed

Probab=100.00  E-value=7.8e-38  Score=266.42  Aligned_cols=211  Identities=19%  Similarity=0.292  Sum_probs=175.2

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccc-cccCCcccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSM-GVFGSIVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~-~~~~~~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      +++|||||||.++|.+++++|+++|++||++||+||+|.++.+++..+.++ ...+..+++++++||||.|++||+|+||
T Consensus       172 ~l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~  251 (389)
T PRK08068        172 YLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMAGWRVAF  251 (389)
T ss_pred             EEECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhccCCccceeEe
Confidence            888999999999999999999999999999999999999988875333333 2233456889999999999999999999


Q ss_pred             EEeeCCCCCcchhhHHHHHHHHhhhc-CCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445           91 LVTSDPNGILQDSGIVDSIKIFLNIS-SDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKP  169 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~  169 (246)
                      +++++        ++++.+......+ .+.+++.|.++..++.+ ...++++.++.++++++.+.+.|+++ ++. +..|
T Consensus       252 ~~~~~--------~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~r~~~~~~L~~~-g~~-~~~~  320 (389)
T PRK08068        252 AVGNE--------SVIEAINLLQDHLFVSLFGAIQDAAIEALLS-DQSCVAELVARYESRRNAFISACREI-GWE-VDAP  320 (389)
T ss_pred             EecCH--------HHHHHHHHHHhhccCCCChHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHC-CCc-ccCC
Confidence            99988        9999998775533 35566678888888864 35889999999999999999999987 665 5688


Q ss_pred             CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHHHHH
Q 042445          170 EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKAF  238 (246)
Q Consensus       170 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l~~~  238 (246)
                      .||+|+|++++...     ++.++...+++++||.+.||..|+.  ++++|++++.+++.+.+++++|.++
T Consensus       321 ~g~~~~~v~~~~~~-----~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~l~~al~~l~~~  386 (389)
T PRK08068        321 KGSFFAWMPVPKGY-----TSEQFADLLLEKAHVAVAPGNGFGEHGEGYVRVGLLTDEERLREAVERIGKL  386 (389)
T ss_pred             CeeEEEEEECCCCC-----CHHHHHHHHHHhCCEEEecchHhCccCCCeEEEEEcCCHHHHHHHHHHHHHh
Confidence            99999999887532     3566666666678999999998875  6899999998888999999998764

>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

Probab=100.00  E-value=1.3e-37  Score=268.42  Aligned_cols=227  Identities=23%  Similarity=0.427  Sum_probs=196.1

Q ss_pred             hhhhhhhc---cc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEE
Q 042445            2 ELINQDIT---RE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTL   74 (246)
Q Consensus         2 e~~~~~~~---~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~   74 (246)
                      |.++....   ++    +++++ ||||.++|.+.+++|+++|++||++||+||+|+++.+++.+..++..++..++||++
T Consensus       216 e~le~~~~~~~~k~~y~~P~~q-NPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ld~~~rViy~  294 (459)
T COG1167         216 EALEEALAQWKPKAVYVTPTFQ-NPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKALDAPGRVIYL  294 (459)
T ss_pred             HHHHHHHhhcCCcEEEECCCCC-CCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCChHhhCCCCCEEEE
Confidence            45555554   33    66655 999999999999999999999999999999999999998777788889888999999


Q ss_pred             cccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHH
Q 042445           75 GSISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADK  152 (246)
Q Consensus        75 ~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~  152 (246)
                      +||||. ..||+|+||+++|.        ++++.+..... ...+++.+.|.+++..+.++. ++|+.+++..|+++++.
T Consensus       295 gSFSK~-l~PglRlG~vv~p~--------~~~~~~~~~k~~~~~~~s~~~Q~~la~~l~~G~~~~hl~~lR~~y~~rr~~  365 (459)
T COG1167         295 GSFSKT-LAPGLRLGYVVAPP--------ELIEKLLRLKQAADLGPSSLSQAALAAFLLSGHYDRHLRRLRREYARRRDA  365 (459)
T ss_pred             eeehhh-cccccceeeeeCCH--------HHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            999999 69999999999999        99999887744 455889999999999999654 89999999999999999


Q ss_pred             HHHHhhc-CCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEec-CCCcCC----CCeEEEEeec-Ch
Q 042445          153 CCDRLKE-IPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLP-GITVGL----KDWLRITFAV-EP  225 (246)
Q Consensus       153 l~~~L~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p-g~~f~~----~~~iRls~~~-~~  225 (246)
                      +.+.|++ .++...+..|.||+|+|++++...      +...+...+.++|+.+.| |..|..    .+++|++++. ++
T Consensus       366 l~~~L~~~~~~~~~~~~p~gG~flwl~l~~~~------~~~~l~~~a~~~gv~i~~~g~~f~~~~~~~~~~Rl~~s~~~~  439 (459)
T COG1167         366 LLEALAEYLPELATWTRPEGGLFLWLELPEGI------DARELLAAALEKGVVVTPLGSAFSADGDPRNGLRLSFSSPSE  439 (459)
T ss_pred             HHHHHHHhCCCCeeeecCCceEEEEEEcCCCC------CHHHHHHHHHHCCCEEEcCCccccCCCCCCCeEEEEcCCCCH
Confidence            9999998 454555789999999999998763      445556677789999999 888876    4589999997 89


Q ss_pred             HHHHHHHHHHHHHHHHHhh
Q 042445          226 SALENGLGRMKAFYDRHAE  244 (246)
Q Consensus       226 ~~l~~~~~~l~~~~~~~~~  244 (246)
                      +++++++++|.+.+++...
T Consensus       440 e~i~~gi~~l~~~~~~~~~  458 (459)
T COG1167         440 EEIEEGIKRLAALLREAAA  458 (459)
T ss_pred             HHHHHHHHHHHHHHHHHhc
Confidence            9999999999999987653

>PRK07590 L,L-diaminopimelate aminotransferase; Validated

Probab=100.00  E-value=1e-37  Score=267.28  Aligned_cols=212  Identities=16%  Similarity=0.167  Sum_probs=175.9

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      +++|||||||.++|.+++++|+++|++||++||+||+|.++.+++..+.++..++. .+++|+++||||.|++||+|+||
T Consensus       181 ~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~pGlRiG~  260 (409)
T PRK07590        181 YLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFRSFSKTAGFTGTRCAY  260 (409)
T ss_pred             EEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCCcccceEEEecCccccCCcCceeEE
Confidence            77899999999999999999999999999999999999999887644445555543 35799999999999999999999


Q ss_pred             EEeeCCCCCcchhhHHHHH------------HHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh
Q 042445           91 LVTSDPNGILQDSGIVDSI------------KIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRL  157 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l------------~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L  157 (246)
                      +++++        ++++.+            ..... ...++|.+.|.++..++......++++.++.++++++.+.+.|
T Consensus       261 ~i~~~--------~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L  332 (409)
T PRK07590        261 TVVPK--------ELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPEGKAQIKELIDYYMENAKIIREGL  332 (409)
T ss_pred             EEcCH--------HHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            99998        777621            11111 2236899999999999975456789999999999999999999


Q ss_pred             hcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHH
Q 042445          158 KEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRM  235 (246)
Q Consensus       158 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l  235 (246)
                      +++ ++. +..|++|+|+|++++...     ++.+++..+++++||.+.||..|+.  ++++|+++..+++++++++++|
T Consensus       333 ~~~-~~~-~~~~~g~~f~wi~~~~~~-----~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~~l~rl  405 (409)
T PRK07590        333 ESA-GFE-VYGGVNAPYIWVKTPDGM-----SSWDFFDKLLQEANVVGTPGSGFGPSGEGYFRLSAFGSRENVLEAMERI  405 (409)
T ss_pred             Hhc-CCc-eecCCcceEEEEECCCCC-----CHHHHHHHHHHHCCEEEeChhHhCCCCCCEEEEEccCCHHHHHHHHHHH
Confidence            987 565 467889999999987532     3566777777789999999998875  5799999877899999999999


Q ss_pred             HHH
Q 042445          236 KAF  238 (246)
Q Consensus       236 ~~~  238 (246)
                      .++
T Consensus       406 ~~~  408 (409)
T PRK07590        406 KKA  408 (409)
T ss_pred             Hhh
Confidence            875

>PRK09276 LL-diaminopimelate aminotransferase; Provisional

Probab=100.00  E-value=1.1e-37  Score=265.21  Aligned_cols=210  Identities=21%  Similarity=0.318  Sum_probs=178.9

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      +++|||||||.++|.+++++|+++|++||++||+||+|.++.+++..+.++..++. .+++|+++||||.||++|+|+||
T Consensus       171 ~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~  250 (385)
T PRK09276        171 FINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYNMTGWRIGF  250 (385)
T ss_pred             EEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhcCCcchhhee
Confidence            88899999999999999999999999999999999999999887655555555543 45789999999999999999999


Q ss_pred             EEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445           91 LVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKP  169 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~  169 (246)
                      +++++        ++++.+..... ...+++.+.|.++..++.+ .+.++++.++.++++++.+.+.|++. ++. +..|
T Consensus       251 ~i~~~--------~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~-~~~~  319 (385)
T PRK09276        251 AVGNA--------DLIAGLGKVKSNVDSGVFQAIQEAGIAALNG-PQEVVEELRKIYQERRDILVEGLRKL-GLE-VEPP  319 (385)
T ss_pred             eeCCH--------HHHHHHHHHHhhccCCCCHHHHHHHHHHHcC-cHHHHHHHHHHHHHHHHHHHHHHHhC-CCc-ccCC
Confidence            99988        89998887644 3335777899999999974 47889999999999999999999987 666 5678


Q ss_pred             CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHHHH
Q 042445          170 EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKA  237 (246)
Q Consensus       170 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l~~  237 (246)
                      ++|+|+|++++...     ++.+++..+++++||.+.||..|+.  ++++|++++.+++++.+++++|.+
T Consensus       320 ~~~~~~~v~~~~~~-----~~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~~~~~~l~~~l~~l~~  384 (385)
T PRK09276        320 KATFYVWAPVPKGY-----TSAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIALTVPDERIEEAVERIKK  384 (385)
T ss_pred             CcceEEEEECCCCC-----CHHHHHHHHHHhCCEEECCchhhCCCCCCeEEEEeCCCHHHHHHHHHHHhh
Confidence            89999999887532     4667777777789999999998875  579999999888899999988864

>PRK09147 succinyldiaminopimelate transaminase; Provisional

Probab=100.00  E-value=1.2e-37  Score=265.76  Aligned_cols=209  Identities=20%  Similarity=0.322  Sum_probs=175.3

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCC-CCcc-cc---ccC--CcccEEEEcccccccccC
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNT-PFVS-MG---VFG--SIVPLLTLGSISKRGIVP   84 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~-~~---~~~--~~~~~i~~~s~sK~~~~~   84 (246)
                      +++|||||||.++|.+++++|+++|++||++||+||+|.++.+++. ...+ +.   ..+  ..+++|+++||||.|++|
T Consensus       171 ~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~  250 (396)
T PRK09147        171 FVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRSNVP  250 (396)
T ss_pred             EEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEeccccccCCc
Confidence            8889999999999999999999999999999999999999988753 1111 11   122  246899999999999999


Q ss_pred             CceEEEEEeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 042445           85 GLRLGWLVTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCI  163 (246)
Q Consensus        85 g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  163 (246)
                      |+|+||+++++        ++++.+...... ..+++++.|.++...+.  .+.++++.++.++++++.+.+.|++.  +
T Consensus       251 GlRiG~~~~~~--------~l~~~~~~~~~~~~~~~~~~~q~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~~~--~  318 (396)
T PRK09147        251 GLRSGFVAGDA--------ALLKKFLLYRTYHGCAMPPAVQAASIAAWN--DEAHVRENRALYREKFDAVTPILAPV--L  318 (396)
T ss_pred             cceeeeecCCH--------HHHHHHHHHhhhcccCCCHHHHHHHHHHhc--chhHHHHHHHHHHHHHHHHHHHHHHh--c
Confidence            99999999998        899888776542 34788999999888775  46789999999999999999999874  3


Q ss_pred             ccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--------CCeEEEEeecChHHHHHHHHHH
Q 042445          164 TCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--------KDWLRITFAVEPSALENGLGRM  235 (246)
Q Consensus       164 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--------~~~iRls~~~~~~~l~~~~~~l  235 (246)
                      . +..|++|+|+|++++.       ++.+++..+++++||.+.||..|+.        .+++|++++.+++++++++++|
T Consensus       319 ~-~~~p~~g~f~~~~~~~-------~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~~~~~~~~l~~~l~rl  390 (396)
T PRK09147        319 D-VQLPDAGFYLWAKVPG-------DDTEFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIALVAPLAECVEAAERI  390 (396)
T ss_pred             C-CCCCCeeEEEEEECCC-------CHHHHHHHHHHhCCEEEeCCccccccccCCCCCCCeEEEEecCCHHHHHHHHHHH
Confidence            3 4678999999999872       3677778878889999999998752        5799999999889999999999


Q ss_pred             HHHHH
Q 042445          236 KAFYD  240 (246)
Q Consensus       236 ~~~~~  240 (246)
                      .+++.
T Consensus       391 ~~~~~  395 (396)
T PRK09147        391 VDFCR  395 (396)
T ss_pred             HHHhc
Confidence            98773

>PRK12414 putative aminotransferase; Provisional

Probab=100.00  E-value=1.3e-37  Score=264.56  Aligned_cols=221  Identities=19%  Similarity=0.301  Sum_probs=181.3

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEcc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGS   76 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s   76 (246)
                      +.+++.++++    +++|||||||.++|.+++++|+++|++||+++|+||+|.++.+++..+.++..+.. .+++++++|
T Consensus       153 ~~l~~~l~~~~~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~S  232 (384)
T PRK12414        153 DEVAAAITPRTRMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSS  232 (384)
T ss_pred             HHHHhhcCcccEEEEEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEec
Confidence            3445555433    88899999999999999999999999999999999999999987654445544433 458999999


Q ss_pred             cccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445           77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD  155 (246)
Q Consensus        77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  155 (246)
                      |||.|++||+|+||+++++        ++++.+..... ...++|.+.|.++..+|.++.  +..+.++.++++++.+.+
T Consensus       233 fSK~~~~pGlRiG~~v~~~--------~l~~~l~~~~~~~~~~~s~~~q~a~~~~l~~~~--~~~~~~~~~~~~r~~l~~  302 (384)
T PRK12414        233 FGKSYHVTGWRVGYCLAPA--------ELMDEIRKVHQFMVFSADTPMQHAFAEALAEPA--SYLGLGAFYQRKRDLLAR  302 (384)
T ss_pred             ccccccCccceEEEEecCH--------HHHHHHHHHHhheecCCCcHHHHHHHHHhcCCh--HHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998        88988887654 344789999999999998532  334578889999999999


Q ss_pred             HhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC----CCeEEEEeecChHHHHHH
Q 042445          156 RLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL----KDWLRITFAVEPSALENG  231 (246)
Q Consensus       156 ~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----~~~iRls~~~~~~~l~~~  231 (246)
                      .|++. ++. +.+|.||+|+|++++...  + .++.+++..+++++||.+.||..|+.    .+++|++++.++++++++
T Consensus       303 ~L~~~-g~~-~~~~~gg~~~~~~~~~~~--~-~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRis~~~~~~~~~~~  377 (384)
T PRK12414        303 ELAGS-RFE-LLPSEGSFFMLARFRHFS--D-ESDSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSFSKDDATLVEG  377 (384)
T ss_pred             HHHhC-CCe-ecCCCcceEEEEcccccC--C-CCHHHHHHHHHHhCCEEEecchhhcCCCCCCCEEEEEecCCHHHHHHH
Confidence            99987 565 568899999998886411  0 13677877888999999999998853    579999999989999999


Q ss_pred             HHHHHH
Q 042445          232 LGRMKA  237 (246)
Q Consensus       232 ~~~l~~  237 (246)
                      +++|.+
T Consensus       378 ~~rl~~  383 (384)
T PRK12414        378 ARRLCS  383 (384)
T ss_pred             HHHHhh
Confidence            999874

>PRK09265 aminotransferase AlaT; Validated

Probab=100.00  E-value=2.9e-37  Score=264.13  Aligned_cols=228  Identities=22%  Similarity=0.374  Sum_probs=178.0

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      +++|||||||.+++.+++++|+++|+++|++||+||+|.++.+++..+.++..+....++++++||||.|++||+|+||+
T Consensus       173 ~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~  252 (404)
T PRK09265        173 VIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIASLAPDLLCVTFNGLSKAYRVAGFRVGWM  252 (404)
T ss_pred             EEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHHcCCCceEEEEecchhhccCcccceEEE
Confidence            88899999999999999999999999999999999999999987655556555555557999999999999999999999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCC
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEE-EFFSKIIDILRETADKCCDRLKEIPCITCPKKPE  170 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~  170 (246)
                      +++.......  .+++.+........++|.++|.++..+|..... ....+..+.+.++++.+.+.|++++++. +..|+
T Consensus       253 v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~-~~~p~  329 (404)
T PRK09265        253 VLSGPKKHAK--GYIEGLDMLASMRLCANVPAQHAIQTALGGYQSINELILPGGRLYEQRDRAWELLNAIPGVS-CVKPK  329 (404)
T ss_pred             EEeCchHHHH--HHHHHHHHHhccccCCCcHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-ccCCC
Confidence            9753210000  234444333223347899999999999974221 2222223467788999999998887776 57899


Q ss_pred             CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHHHHHHHHHh
Q 042445          171 GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       171 ~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l~~~~~~~~  243 (246)
                      +|+|+|++++.... +..++.+++.+++.++||.+.||..|+.  ++++|++++.+++.+++++++|.++++++.
T Consensus       330 ~g~~l~~~~~~~~~-~~~~~~~~~~~~l~~~gv~v~pg~~F~~~~~~~~Ri~~~~~~e~l~~~l~rl~~~l~~~~  403 (404)
T PRK09265        330 GALYAFPKLDPKVY-PIHDDEQFVLDLLLQEKVLLVQGTGFNWPEPDHFRIVTLPRVDDLEEAIGRIGRFLSGYR  403 (404)
T ss_pred             cceEEEEEeccccc-CCCCHHHHHHHHHHhCCEEEECchhhCCCCCCeEEEEeCCCHHHHHHHHHHHHHHHHHhc
Confidence            99999999875311 1113667788899999999999999864  689999998899999999999999998764

>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]

Probab=100.00  E-value=8.5e-39  Score=259.70  Aligned_cols=226  Identities=25%  Similarity=0.376  Sum_probs=193.7

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCcccccc-CCcccEEEEcc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVF-GSIVPLLTLGS   76 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~-~~~~~~i~~~s   76 (246)
                      +.++..++++    ++|+||||||.++|++++++|+++|++||+++|.||+|..+.+++..+.....+ +.+++++.++|
T Consensus       163 ~~le~~~t~kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~aslPgm~ertitvgS  242 (420)
T KOG0257|consen  163 EELESKITEKTKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASLPGMYERTITVGS  242 (420)
T ss_pred             HHHHhhccCCccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecCCchhheEEEecc
Confidence            4566777776    999999999999999999999999999999999999999999998767776666 44789999999


Q ss_pred             cccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHh-hhcCCCCchHHHHHHHHHhhchH-------HHHHHHHHHHHH
Q 042445           77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFL-NISSDPATFIQGAVPQILEKTEE-------EFFSKIIDILRE  148 (246)
Q Consensus        77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~-------~~~~~~~~~~~~  148 (246)
                      +||.|+++|||+||+++++        .++..+...+ +..+.++...|.|.++++..+..       .++.++...|++
T Consensus       243 ~gKtf~~TGWrlGW~igp~--------~L~~~~~~vh~~~~~~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~  314 (420)
T KOG0257|consen  243 FGKTFGVTGWRLGWAIGPK--------HLYSALFPVHQNFVFTCPTPIQEASAAAFALELACLQPGGSYFITELVKEYKE  314 (420)
T ss_pred             ccceeeeeeeeeeeeechH--------HhhhhHHHHhhccccccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHH
Confidence            9999999999999999977        8888888774 45668899999999998886542       455669999999


Q ss_pred             HHHHHHHHhhcCCCCccccCCCCceEEEEEecccc-------ccCCCChHHHHHHHHHhcCeEEecCCCcCC-------C
Q 042445          149 TADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSL-------LEGINSDMEFALKLAKEESVIVLPGITVGL-------K  214 (246)
Q Consensus       149 ~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-------~  214 (246)
                      +|+.+.+.|+++ |+. +..|+|++|+|++++...       .....++..+...++++.|+.+.|++.|+.       .
T Consensus       315 krdil~k~L~~l-g~~-v~~p~gayyl~adfs~~~~~~~~~~~~~~~~d~~~~~wl~~~~Gv~~IP~saF~s~~~~~~~~  392 (420)
T KOG0257|consen  315 KRDILAKALEEL-GLK-VTGPEGAYYLWADFSLAKSWPFFEEILEKPDDFKFVRWLIKEGGVVVIPPSAFGSREHIKVAE  392 (420)
T ss_pred             HHHHHHHHHHhc-CCc-cccCCCceEEEEeccccccCCcchhhccCCCceeeehhhhccCcEEEeCchhcCCchhhHHHH
Confidence            999999999999 888 689999999999998211       112235778899999999999999999987       4


Q ss_pred             CeEEEEeecChHHHHHHHHHHHH
Q 042445          215 DWLRITFAVEPSALENGLGRMKA  237 (246)
Q Consensus       215 ~~iRls~~~~~~~l~~~~~~l~~  237 (246)
                      +.+|+++..+++.++.+.+++++
T Consensus       393 ~~~r~~~~k~~~~L~~a~e~l~~  415 (420)
T KOG0257|consen  393 RLVRFCFCKADETLRKAIERLKK  415 (420)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhh
Confidence            67888888899999999999883

>PRK09082 methionine aminotransferase; Validated

Probab=100.00  E-value=8.6e-38  Score=265.84  Aligned_cols=221  Identities=19%  Similarity=0.223  Sum_probs=184.7

Q ss_pred             hhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEccc
Q 042445            3 LINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGSI   77 (246)
Q Consensus         3 ~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~   77 (246)
                      .+++.++++    ++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++..+.++..+.. .+++++++||
T Consensus       155 ~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~  234 (386)
T PRK09082        155 RFAAAISPRTRLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSF  234 (386)
T ss_pred             HHHHhcCccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeec
Confidence            445544443    78899999999999999999999999999999999999999987654555554433 5689999999


Q ss_pred             ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDR  156 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  156 (246)
                      ||.|+++|+|+||+++++        ++++.++.... ..++++.+.|.++..++.. .+.++++.++.++++++.+.+.
T Consensus       235 SK~~~~~G~RiG~iv~~~--------~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~  305 (386)
T PRK09082        235 GKTYHVTGWKVGYCVAPA--------ALSAEFRKVHQYNTFTVNTPAQLALADYLRA-EPEHYLELPAFYQAKRDRFRAA  305 (386)
T ss_pred             hhhccchhhhhhhhhCCH--------HHHHHHHHHHhhhcCCCChHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998        99998887753 3447899999999999974 4678888999999999999999


Q ss_pred             hhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC----CCeEEEEeecChHHHHHHH
Q 042445          157 LKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL----KDWLRITFAVEPSALENGL  232 (246)
Q Consensus       157 L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----~~~iRls~~~~~~~l~~~~  232 (246)
                      |++. ++. +..|+||+|+|++++..  ++ .++.+++..+++++||.+.||..|+.    .+++|++++.+++.+++++
T Consensus       306 L~~~-~~~-~~~~~g~~~~~~~~~~~--~~-~~~~~~~~~l~~~~~v~v~pg~~f~~~~~~~~~~Ri~~~~~~~~l~~~~  380 (386)
T PRK09082        306 LANS-RFK-LLPCEGTYFQLVDYSAI--SD-LDDVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRLCFAKQEETLDAAA  380 (386)
T ss_pred             HHhC-CCc-ccCCCeeEEEEEecccc--CC-CCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCEEEEEecCCHHHHHHHH
Confidence            9986 566 56789999999998741  01 14667777778899999999998853    5799999999889999999


Q ss_pred             HHHHH
Q 042445          233 GRMKA  237 (246)
Q Consensus       233 ~~l~~  237 (246)
                      ++|++
T Consensus       381 ~rl~~  385 (386)
T PRK09082        381 ERLCQ  385 (386)
T ss_pred             HHHhh
Confidence            99875

>PRK07568 aspartate aminotransferase; Provisional

Probab=100.00  E-value=4.8e-37  Score=262.34  Aligned_cols=227  Identities=22%  Similarity=0.361  Sum_probs=187.1

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEcc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGS   76 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s   76 (246)
                      |.+++.+.++    ++++||||||.++|.+++++|+++|+++|+++|+||+|.++.+++..+.++..+.. .+++++++|
T Consensus       153 ~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S  232 (397)
T PRK07568        153 EEIEKLITPKTKAILISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDS  232 (397)
T ss_pred             HHHHHhcCccceEEEEECCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEec
Confidence            3444444443    78899999999999999999999999999999999999999887655555555543 578999999


Q ss_pred             cccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 042445           77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDR  156 (246)
Q Consensus        77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  156 (246)
                      |||.|+++|+|+||+++++.       ++++.+........++|.+.|.++..+++. .+.++++.++.++++++.+.+.
T Consensus       233 ~SK~~~~~G~R~G~~~~~~~-------~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~  304 (397)
T PRK07568        233 VSKRYSACGARIGCLISKNK-------ELIAAAMKLCQARLSPPTLEQIGAAALLDT-PESYFDEVREEYKKRRDILYEE  304 (397)
T ss_pred             chhhccCCCcceEEEecCCH-------HHHHHHHHHhhccCCCCcHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999642       777777655333347899999999999985 3678999999999999999999


Q ss_pred             hhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHh-----cCeEEecCCCcCC-----CCeEEEEeecChH
Q 042445          157 LKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKE-----ESVIVLPGITVGL-----KDWLRITFAVEPS  226 (246)
Q Consensus       157 L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~-----~gi~v~pg~~f~~-----~~~iRls~~~~~~  226 (246)
                      |++++++. +..|+||+|+|++++..      ++.++...++++     +||.+.||..|+.     .+++|++++.+++
T Consensus       305 L~~~~~~~-~~~p~g~~~~~~~l~~~------~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~~~~~~iRls~~~~~~  377 (397)
T PRK07568        305 LNKIPGVV-CEKPKGAFYIIAKLPVD------DAEDFAKWLLTDFNYNGETVMVAPASGFYATPGLGKNEIRIAYVLNEE  377 (397)
T ss_pred             HhcCCCce-ecCCCcceEEEEecCCC------CHHHHHHHHHhhcccccceEEEeCchHhcCCCCCCCCeEEEEEeCCHH
Confidence            99887766 57889999999988642      356666666654     6999999998842     4799999998889


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 042445          227 ALENGLGRMKAFYDRHA  243 (246)
Q Consensus       227 ~l~~~~~~l~~~~~~~~  243 (246)
                      ++++++++|.++++++.
T Consensus       378 ~~~~~~~~l~~~l~~~~  394 (397)
T PRK07568        378 DLKRAMEILKEALEKYN  394 (397)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            99999999999998765

>PRK05942 aspartate aminotransferase; Provisional

Probab=100.00  E-value=3e-37  Score=263.23  Aligned_cols=211  Identities=19%  Similarity=0.313  Sum_probs=179.3

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      +++|||||||.++|.+++++|+++|+++|++||+||+|.++.+++..+.++..+.. .+.+|+++||||.|++||+|+||
T Consensus       175 ~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~GlRiG~  254 (394)
T PRK05942        175 YFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMAGWRVGF  254 (394)
T ss_pred             EEcCCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecchhccCChhhheee
Confidence            77899999999999999999999999999999999999999987654445544433 34679999999999999999999


Q ss_pred             EEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445           91 LVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKP  169 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~  169 (246)
                      +++++        ++++.++.... ...+++.+.|.++..+++. .+.++++.++.++++++.+.+.|++. ++. +..|
T Consensus       255 i~~~~--------~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~-~~~~  323 (394)
T PRK05942        255 VVGNR--------HIIQGLRTLKTNLDYGIFSALQKAAETALQL-PDSYLQQVQERYRTRRDFLIQGLGEL-GWN-IPPT  323 (394)
T ss_pred             eecCH--------HHHHHHHHHHhhcccCCCHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHC-CCe-ecCC
Confidence            99988        99999987754 2347888999999999974 46789999999999999999999887 665 5678


Q ss_pred             CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHHHHH
Q 042445          170 EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKAF  238 (246)
Q Consensus       170 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l~~~  238 (246)
                      ++|+|+|++++...     ++.+++.++++++||.+.||..|+.  ++++|++++.+.+.+.+++++|.++
T Consensus       324 ~~~~f~~~~~~~~~-----~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~  389 (394)
T PRK05942        324 KATMYLWVPCPVGM-----GSTDFALNVLQKTGVVVTPGNAFGEGGEGYVRISLIADCDRLGEALDRLKQA  389 (394)
T ss_pred             CeeeEEEEECCCCC-----CHHHHHHHHHHHCCEEEeCChhhCcCCCCeEEEEecCCHHHHHHHHHHHHHh
Confidence            99999999987432     3667777788899999999998864  6899999998888899999988764

>PRK06108 aspartate aminotransferase; Provisional

Probab=100.00  E-value=3.3e-37  Score=262.08  Aligned_cols=214  Identities=25%  Similarity=0.436  Sum_probs=181.8

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccC-CCCCcccccc-CCcccEEEEcccccccccCCceEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFG-NTPFVSMGVF-GSIVPLLTLGSISKRGIVPGLRLG   89 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~-~~~~~~~~~~-~~~~~~i~~~s~sK~~~~~g~r~G   89 (246)
                      ++++||||||.++|.+++++|+++|+++|+++|+||+|.++.++ +....+...+ ...+++++++||||.|+++|+|+|
T Consensus       163 ~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG  242 (382)
T PRK06108        163 FINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRLG  242 (382)
T ss_pred             EEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhccCccccee
Confidence            78899999999999999999999999999999999999999886 3333333333 334689999999999999999999


Q ss_pred             EEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccC
Q 042445           90 WLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKK  168 (246)
Q Consensus        90 ~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~  168 (246)
                      |+++++        ++++.+..... .+.+++++.|.++..+|.+. +.++++.++.++++++.+.+.|++++++. +..
T Consensus       243 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~  312 (382)
T PRK06108        243 WLVAPP--------ALGQVLEKLIEYNTSCVAQFVQRAAVAALDEG-EDFVAELVARLRRSRDHLVDALRALPGVE-VAK  312 (382)
T ss_pred             eeeCCH--------HHHHHHHHHHHhcccCCChHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHhCCCCc-ccC
Confidence            999988        88988877644 24468999999999999853 67888999999999999999998887777 567


Q ss_pred             CCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHHHHHHH
Q 042445          169 PEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKAFYD  240 (246)
Q Consensus       169 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l~~~~~  240 (246)
                      |++|+|+|++++...     ++.+++..+++++||.+.||..|+.  ++++|+|++.+++++++++++|.++++
T Consensus       313 p~~g~~~~~~l~~~~-----~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ris~~~~~~~l~~~l~~l~~~l~  381 (382)
T PRK06108        313 PDGAMYAFFRIPGVT-----DSLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFARDPARLDEAVERLRRFLA  381 (382)
T ss_pred             CCeeEEEEEeCCCCC-----CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHh
Confidence            899999999887432     3567777777889999999998864  689999999999999999999998874

>PRK07683 aminotransferase A; Validated

Probab=100.00  E-value=6.7e-37  Score=260.41  Aligned_cols=217  Identities=21%  Similarity=0.365  Sum_probs=183.5

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCcccccc-CCcccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVF-GSIVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~-~~~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      ++++||||||.++|.+++++|+++|+++|+++|+||+|.++.+++. ..++..+ +..+++++++||||.|++||+|+||
T Consensus       166 ~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~vi~~~s~SK~~~~pGlRiG~  244 (387)
T PRK07683        166 VLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQP-HTSIAHFPEMREKTIVINGLSKSHSMTGWRIGF  244 (387)
T ss_pred             EEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCC-cCChhhccCCcCCeEEEeeccccccCccceeEE
Confidence            7889999999999999999999999999999999999999988653 3344444 3456899999999999999999999


Q ss_pred             EEeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445           91 LVTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKP  169 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~  169 (246)
                      +++++        ++++.+...... ..+++.+.|.++..++.++ ..++++.++.++++++.+.+.|++. ++. +..|
T Consensus       245 i~~~~--------~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~l~~~-~~~-~~~~  313 (387)
T PRK07683        245 LFAPS--------YLAKHILKVHQYNVTCASSISQYAALEALTAG-KDDAKMMRHQYKKRRDYVYNRLISM-GLD-VEKP  313 (387)
T ss_pred             EEcCH--------HHHHHHHHHHHhccCCCChHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHHc-CCc-ccCC
Confidence            99998        889988866433 2367889999999999753 4578888999999999999999887 565 5688


Q ss_pred             CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHHHHHHHHHhh
Q 042445          170 EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKAFYDRHAE  244 (246)
Q Consensus       170 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l~~~~~~~~~  244 (246)
                      ++|+|+|+.++...    .++.+++.++++++||.+.||..|+.  ++++|++++.+++++++++++|.+++++..+
T Consensus       314 ~~~~~~~~~~~~~~----~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~Ri~~~~~~~~~~~al~~l~~~l~~~~~  386 (387)
T PRK07683        314 TGAFYLFPSIGHFT----MSSFDFALDLVEEAGLAVVPGSAFSEYGEGYVRLSYAYSIETLKEGLDRLEAFLQQKAK  386 (387)
T ss_pred             CeeEEEEEecccCC----CCHHHHHHHHHHhCCEEEcCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHhhcc
Confidence            99999998876421    13667777888999999999999865  6899999999999999999999999876544

>PRK08912 hypothetical protein; Provisional

Probab=100.00  E-value=4.7e-37  Score=261.51  Aligned_cols=217  Identities=19%  Similarity=0.292  Sum_probs=181.6

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      ++++||||||.++|.+++++|+++|++||+++|+||+|.++.+++..+.++..+.. .+++++++||||.|+++|+|+||
T Consensus       164 ~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~  243 (387)
T PRK08912        164 LLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLTGWKVGF  243 (387)
T ss_pred             EEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeechhhccCcCceeEE
Confidence            88899999999999999999999999999999999999999887644445444433 46899999999999999999999


Q ss_pred             EEeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445           91 LVTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKP  169 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~  169 (246)
                      +++++        ++++.+...... ..+.++..|.++..++.. .+.++++.++.++++++.+.+.|++. |+. +..|
T Consensus       244 ~~~~~--------~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~  312 (387)
T PRK08912        244 VCAAP--------PLLRVLAKAHQFLTFTTPPNLQAAVAYGLGK-PDDYFEGMRADLARSRDRLAAGLRRI-GFP-VLPS  312 (387)
T ss_pred             EecCH--------HHHHHHHHHHhhccccCChHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHhC-CCc-ccCC
Confidence            99988        899988776543 346777889988888863 46788899999999999999999987 666 5678


Q ss_pred             CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC----CCeEEEEeecChHHHHHHHHHHHHHHHH
Q 042445          170 EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL----KDWLRITFAVEPSALENGLGRMKAFYDR  241 (246)
Q Consensus       170 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----~~~iRls~~~~~~~l~~~~~~l~~~~~~  241 (246)
                      ++|+|+|++++....  ..++.+++..+++++||.+.||..|+.    .+++|++++.+++.+++++++|.+++++
T Consensus       313 ~g~~~l~~~l~~~~~--~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iRl~~~~~~~~l~~~l~rl~~~l~~  386 (387)
T PRK08912        313 QGTYFLTVDLAPLGL--AEDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFAKRDATLDEAVERLAAARRR  386 (387)
T ss_pred             CcceEEEecccccCC--CCCHHHHHHHHHhcCCEEEecchhhCCCCCCCCEEEEEEeCCHHHHHHHHHHHHHHHhc
Confidence            899999998874110  014667777777889999999998853    5899999999899999999999998764

>PRK07337 aminotransferase; Validated

Probab=100.00  E-value=7.2e-37  Score=260.47  Aligned_cols=225  Identities=19%  Similarity=0.320  Sum_probs=182.8

Q ss_pred             hhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccc
Q 042445            3 LINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSIS   78 (246)
Q Consensus         3 ~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~s   78 (246)
                      .+++.+.++    ++++||||||.++|.+++++|+++|+++++++|+||+|.++.+++. +.+...+  .+++++++|||
T Consensus       155 ~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~-~~~~~~~--~~~vi~~~S~S  231 (388)
T PRK07337        155 DVEAAWGERTRGVLLASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAA-PVSALSL--GDDVITINSFS  231 (388)
T ss_pred             HHHhhcCccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCC-CcChhhc--cCCEEEEEech
Confidence            444444433    8899999999999999999999999999999999999999888654 2222222  35799999999


Q ss_pred             cccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh
Q 042445           79 KRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRL  157 (246)
Q Consensus        79 K~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L  157 (246)
                      |.|+++|+|+||+++++        ++++.+..... ...++|.+.|.++..++.+....+.++.++.++++++.+.+.|
T Consensus       232 K~~~~~G~RiG~~~~~~--------~l~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L  303 (388)
T PRK07337        232 KYFNMTGWRLGWLVVPE--------ALVGTFEKLAQNLFICASALAQHAALACFEPDTLAIYERRRAEFKRRRDFIVPAL  303 (388)
T ss_pred             hhcCCchhheeeeecCH--------HHHHHHHHHHHHhccCCChHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998        89998887754 3447899999999999975444556888999999999999999


Q ss_pred             hcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC---CCeEEEEeecChHHHHHHHHH
Q 042445          158 KEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFAVEPSALENGLGR  234 (246)
Q Consensus       158 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~iRls~~~~~~~l~~~~~~  234 (246)
                      +++ ++..+..|++|+|+|++++....++..++.+++..+++++||.+.||..|+.   .+++|++++.+++.+++++++
T Consensus       304 ~~~-~~~~~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~Ri~~~~~~~~l~~~l~r  382 (388)
T PRK07337        304 ESL-GFKVPVMPDGAFYVYADCRGVAHPAAGDSAALTQAMLHDAGVVLVPGRDFGPHAPRDYIRLSYATSMSRLEEAVAR  382 (388)
T ss_pred             Hhc-CCccccCCCeeEEEEEecccccCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCCEEEEEecCCHHHHHHHHHH
Confidence            987 5543357899999999987421011124667777888899999999999975   589999999989999999999


Q ss_pred             HHHHH
Q 042445          235 MKAFY  239 (246)
Q Consensus       235 l~~~~  239 (246)
                      |.+++
T Consensus       383 l~~~l  387 (388)
T PRK07337        383 LGKLF  387 (388)
T ss_pred             HHHHh
Confidence            98765

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=100.00  E-value=7e-37  Score=260.62  Aligned_cols=217  Identities=19%  Similarity=0.387  Sum_probs=181.8

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      ++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++..+.++..+.. +++++++||||.|++||+|+||+
T Consensus       171 ~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~i~~~S~SK~~g~~GlRvG~~  249 (391)
T PRK07309        171 ILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEYLP-DQTILINGLSKSHAMTGWRIGLI  249 (391)
T ss_pred             EEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHhcc-CCEEEEecChhhccCccceeEEE
Confidence            78899999999999999999999999999999999999999986544445444433 58999999999999999999999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCC
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPE  170 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~  170 (246)
                      ++++        ++++.+...... ..++|++.|.++..+++++ ..+....++.++++++.+.+.|++. ++. +..|+
T Consensus       250 v~~~--------~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~l~~~-~~~-~~~p~  318 (391)
T PRK07309        250 FAPA--------EFTAQLIKSHQYLVTAATTMAQFAAVEALTNG-KDDALPMKKEYIKRRDYIIEKMTDL-GFK-IIKPD  318 (391)
T ss_pred             EeCH--------HHHHHHHHHHhhcccCCChHHHHHHHHHHhCC-hhHHHHHHHHHHHHHHHHHHHHHHC-CCe-ecCCC
Confidence            9998        999988876442 3478999999999999864 3334667788899999999999887 666 57889


Q ss_pred             CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHHHHHHHHHh
Q 042445          171 GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       171 ~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l~~~~~~~~  243 (246)
                      +|+|+|++++...  + .++.+++..+++++||.+.||..|+.  ++++|++++.+.+++++++++|.+++++++
T Consensus       319 gg~~~~~~l~~~~--~-~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~~i~~l~~~~~~~~  390 (391)
T PRK07309        319 GAFYIFAKIPAGY--N-QDSFKFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYAASMETIKEAMKRLKEYMEEHA  390 (391)
T ss_pred             eeEEEEEECCCCC--C-CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHHhhc
Confidence            9999999887531  0 13566777788889999999998876  689999999888899999999999997764

>PLN02231 alanine transaminase

Probab=100.00  E-value=6.1e-37  Score=267.99  Aligned_cols=225  Identities=18%  Similarity=0.233  Sum_probs=178.5

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccC-CCCCccccccC-------CcccEEEEccccccc-c
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFG-NTPFVSMGVFG-------SIVPLLTLGSISKRG-I   82 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~-~~~~~~~~~~~-------~~~~~i~~~s~sK~~-~   82 (246)
                      +++|||||||.++|.+++++|+++|++||++||+||+|.++.|+ +..+.++..+.       ...++++++||||.| +
T Consensus       276 vl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g  355 (534)
T PLN02231        276 VVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYG  355 (534)
T ss_pred             EEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEeccCccccc
Confidence            88899999999999999999999999999999999999999995 34455554332       123699999999975 7


Q ss_pred             cCCceEEEEEee--CCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhc-----h-HH---HHHHHHHHHHHHHH
Q 042445           83 VPGLRLGWLVTS--DPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKT-----E-EE---FFSKIIDILRETAD  151 (246)
Q Consensus        83 ~~g~r~G~i~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~-----~-~~---~~~~~~~~~~~~~~  151 (246)
                      +||+|+||++++  +.       ++++.+........+.+.+.|.++..+++.+     . +.   +..+.++.++++++
T Consensus       356 ~pGlRiGy~~~~~~~~-------~l~~~l~k~~~~~~~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~~r~~  428 (534)
T PLN02231        356 ECGKRGGYMEVTGFTS-------DVREQIYKVASVNLCSNISGQILASLVMSPPKPGDESYESYMAEKDGILSSLARRAK  428 (534)
T ss_pred             CCccceEEEEEecCCH-------HHHHHHHHHHhhhcCCChHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            899999999874  22       7888887765544467888999998888642     1 23   34456789999999


Q ss_pred             HHHHHhhcCCCCccccCCCCceEEEEEeccc--cc-----cCCCChHHHHHHHHHhcCeEEecCCCcCC---CCeEEEEe
Q 042445          152 KCCDRLKEIPCITCPKKPEGSMFVMVKLNYS--LL-----EGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITF  221 (246)
Q Consensus       152 ~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~--~~-----~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~iRls~  221 (246)
                      .+.+.|++++|+. +..|+||||+|+++...  ..     .+...+..++..++++.||.++||+.|+.   ..++|+++
T Consensus       429 ~l~~~L~~~~gi~-~~~p~Ggfylw~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~~~g~~~~Rit~  507 (534)
T PLN02231        429 TLEDALNSLEGVT-CNKAEGAMYLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQVPGTWHFRCTI  507 (534)
T ss_pred             HHHHHHhcCCCce-ecCCCeeeEEeccccCcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCCCCCCCeEEEEe
Confidence            9999999988887 57899999999665421  10     01112444567788899999999999985   45799999


Q ss_pred             ecChHHHHHHHHHHHHHHHHHhh
Q 042445          222 AVEPSALENGLGRMKAFYDRHAE  244 (246)
Q Consensus       222 ~~~~~~l~~~~~~l~~~~~~~~~  244 (246)
                      ..+++++++++++|.++++++.+
T Consensus       508 ~~~~e~l~eal~RL~~~~~~~~~  530 (534)
T PLN02231        508 LPQEDKIPAIVSRLTEFHKSFMD  530 (534)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH
Confidence            88999999999999999988764

>PRK08363 alanine aminotransferase; Validated

Probab=100.00  E-value=1.1e-36  Score=260.11  Aligned_cols=218  Identities=23%  Similarity=0.380  Sum_probs=182.7

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      +++|||||||.+++.+++++|+++|+++|+++|+||+|.++.+++. +.++..+....++++++||||.|++||+|+||+
T Consensus       171 ~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~-~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~  249 (398)
T PRK08363        171 AVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGK-HVSPGSLTKDVPVIVMNGLSKVYFATGWRLGYI  249 (398)
T ss_pred             EEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCc-ccCHHHcCcCCcEEEEecchhccCCccceEEEE
Confidence            8889999999999999999999999999999999999999988653 334455555668999999999999999999999


Q ss_pred             Ee--eCCCCCcchhhHHHHHHHHhh----hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCcc
Q 042445           92 VT--SDPNGILQDSGIVDSIKIFLN----ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITC  165 (246)
Q Consensus        92 ~~--~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~  165 (246)
                      ++  ++        ++++.+.....    ...++|.+.|.++..+|.. .++++++.++.++++++.+.+.|++++++. 
T Consensus       250 ~~~~~~--------~~~~~l~~~~~~~~~~~~~~s~~~q~~~~~~l~~-~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~-  319 (398)
T PRK08363        250 YFVDPE--------GKLAEVREAIDKLARIRLCPNTPAQFAAIAGLTG-PMDYLEEYMKKLKERRDYIYKRLNEIPGIS-  319 (398)
T ss_pred             EEeCcH--------HHHHHHHHHHHHHhcccccCChHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHhcCCCCE-
Confidence            98  44        66666654422    2237899999999999974 478899999999999999999999887766 


Q ss_pred             ccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHHHHHHHHHh
Q 042445          166 PKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       166 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l~~~~~~~~  243 (246)
                      +..|+||+|+|++++...   ..++.+++..+++++||.+.||..|+.  ++++|++++.+++++++++++|.+++.+..
T Consensus       320 ~~~p~g~~~~~~~l~~~~---~~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~~~~~~  396 (398)
T PRK08363        320 TTKPQGAFYIFPRIEEGP---WKDDKEFVLDVLHEAHVLFVHGSGFGEYGAGHFRLVFLPPVEILEEAMDRFEEFMRERL  396 (398)
T ss_pred             ecCCCeEEEEEEEeccCC---CCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHHhc
Confidence            568899999999887521   013667778888999999999999875  589999998888999999999999987643

>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase

Probab=100.00  E-value=8.7e-37  Score=260.92  Aligned_cols=212  Identities=16%  Similarity=0.133  Sum_probs=172.9

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      +++|||||||.++|.+++++|+++|++||++||+||+|.++.+++..+.++..++. .+++|+++||||.||+||+|+||
T Consensus       178 ~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~pGlRiG~  257 (402)
T TIGR03542       178 YLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGAKECAIEFRSFSKTAGFTGVRLGW  257 (402)
T ss_pred             EEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCCcccEEEEecCccccCCCCcceEE
Confidence            77899999999999999999999999999999999999999876543344444443 46799999999999999999999


Q ss_pred             EEeeCCCCCcchhhHH--------HHHHHHh-hhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 042445           91 LVTSDPNGILQDSGIV--------DSIKIFL-NISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIP  161 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~--------~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  161 (246)
                      +++++        +++        ..+.... ....++|.+.|.++..++.+....+..+.++.++++++.+.+.|++. 
T Consensus       258 ~i~~~--------~l~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-  328 (402)
T TIGR03542       258 TVVPK--------ELTYADGHSVIQDWERRQCTKFNGASYPVQRAAEAAYAGEGLQPILEAISYYMENARILRKALEAA-  328 (402)
T ss_pred             EEecH--------HHhhcchhhHHHHHHHHhhhcccCCCHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHhc-
Confidence            99988        665        2222221 22336888999999999986444567777888999999999999986 


Q ss_pred             CCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHHHHH
Q 042445          162 CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKAF  238 (246)
Q Consensus       162 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l~~~  238 (246)
                      ++. +..|++|+|+|++++...     ++.+++..+++++||.+.||..|+.  .+++|++++.+++++++++++|.++
T Consensus       329 ~~~-~~~~~~~~f~~v~l~~~~-----~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~  401 (402)
T TIGR03542       329 GFK-VYGGEHAPYLWVKTPEGI-----SSWDFFDFLLYQYHVVGTPGSGFGPSGEGFVRFSAFGKRENIVEACERIKEA  401 (402)
T ss_pred             Cce-ecCCCceeEEEEECCCCC-----CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHhh
Confidence            565 456789999999987532     4667777778788999999998865  5899999877899999999999875

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).

>PRK08361 aspartate aminotransferase; Provisional

Probab=100.00  E-value=4.3e-37  Score=262.04  Aligned_cols=216  Identities=22%  Similarity=0.386  Sum_probs=182.9

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      ++++||||||.++|.+++++|+++|+++++++|+||+|.++.+++....++..+.. +++++++||||.|+++|+|+||+
T Consensus       171 ~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~i~~~s~SK~~~~~GlRiG~~  249 (391)
T PRK08361        171 VINYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAP-DNTILANSFSKTFAMTGWRLGFV  249 (391)
T ss_pred             EEeCCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcCC-CCEEEEecCchhcCCcHhhhhhh
Confidence            88899999999999999999999999999999999999999886544444444433 57999999999999999999999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADKCCDRLKEIPCITCPKKP  169 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~  169 (246)
                      ++++        ++++.+..... ...+++.+.|.++..++.++. ..++++.++.++++++.+.+.|++++++. +..|
T Consensus       250 ~~~~--------~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~-~~~p  320 (391)
T PRK08361        250 IAPE--------QVIKDMIKLHAYIIGNVASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLKRLKEMPHIK-VFEP  320 (391)
T ss_pred             ccCH--------HHHHHHHHHHhhhccCCChHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHhCCCCe-ecCC
Confidence            9988        88888876644 234788999999999998644 36799999999999999999999987776 5788


Q ss_pred             CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHHHHHHHH
Q 042445          170 EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKAFYDR  241 (246)
Q Consensus       170 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l~~~~~~  241 (246)
                      +||+|+|++++....    ++.++...+++++||.+.||..|+.  ++++|++++.+++++++++++|.+++++
T Consensus       321 ~g~~~~~~~l~~~~~----~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~al~~l~~~l~~  390 (391)
T PRK08361        321 KGAFYVFANIDETGM----SSEDFAEWLLEKARVVVIPGTAFGKAGEGYIRISYATSKEKLIEAMERMEKALEE  390 (391)
T ss_pred             CEEEEEEEECCCCCC----CHHHHHHHHHHhCCEEEcCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence            999999999874211    4667766666789999999999876  6899999999888999999999998864

>PRK05764 aspartate aminotransferase; Provisional

Probab=100.00  E-value=2.4e-36  Score=257.76  Aligned_cols=221  Identities=26%  Similarity=0.428  Sum_probs=186.0

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCcccccc--CCcccEEEEcccccccccCCceEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVF--GSIVPLLTLGSISKRGIVPGLRLG   89 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~--~~~~~~i~~~s~sK~~~~~g~r~G   89 (246)
                      ++++||||||.++|.+++++|+++|++||+++|+||+|.++.+++..+.+...+  +..+++++++||||.|+++|+|+|
T Consensus       169 ~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG  248 (393)
T PRK05764        169 ILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAYAMTGWRLG  248 (393)
T ss_pred             EEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCcccccCccceeE
Confidence            889999999999999999999999999999999999999998865444444443  334689999999999999999999


Q ss_pred             EEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccC
Q 042445           90 WLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKK  168 (246)
Q Consensus        90 ~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~  168 (246)
                      |+++++        ++++.+..... .+.+++++.|.++..++.. .+.++++.++.++++++.+.+.|++++++. +..
T Consensus       249 ~i~~~~--------~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~-~~~  318 (393)
T PRK05764        249 YAAGPK--------ELIKAMSKLQSHSTSNPTSIAQYAAVAALNG-PQDEVEEMRQAFEERRDLMVDGLNEIPGLE-CPK  318 (393)
T ss_pred             EEecCH--------HHHHHHHHHHhhcccCCChHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHHHHHhhCCCCc-ccC
Confidence            999988        89998887654 3447899999999999974 467888999999999999999999987777 567


Q ss_pred             CCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHHHHHH
Q 042445          169 PEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       169 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~~~~  242 (246)
                      |+||+|+|++++........++.++...+++++||.+.||..|+.++++|++++.+++++++++++|.++++++
T Consensus       319 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~vRis~~~~~~~~~~~i~~l~~~~~~~  392 (393)
T PRK05764        319 PEGAFYVFPNVSKLLGKSITDSLEFAEALLEEAGVAVVPGIAFGAPGYVRLSYATSLEDLEEGLERIERFLESL  392 (393)
T ss_pred             CCcceEEEEecccccccccCCHHHHHHHHHHhCCEEEccccccCCCCEEEEEecCCHHHHHHHHHHHHHHHHhh
Confidence            89999999988753210001246677777788999999999998789999999999999999999999998764

>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase

Probab=100.00  E-value=1.2e-36  Score=259.52  Aligned_cols=207  Identities=22%  Similarity=0.310  Sum_probs=173.0

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCC-CCccc-cc---c--CCcccEEEEcccccccccC
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNT-PFVSM-GV---F--GSIVPLLTLGSISKRGIVP   84 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~-~~---~--~~~~~~i~~~s~sK~~~~~   84 (246)
                      +++|||||||.++|.+++++|+++|++||++||+||+|.++.+++. .+.+. ..   .  +..+++|+++||||.|++|
T Consensus       170 ~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~~~  249 (393)
T TIGR03538       170 FVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNLP  249 (393)
T ss_pred             EEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecchhhcCCc
Confidence            7889999999999999999999999999999999999999987642 22221 11   2  1356899999999999999


Q ss_pred             CceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 042445           85 GLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCI  163 (246)
Q Consensus        85 g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  163 (246)
                      |+|+||+++++        ++++.+..... ...+++++.|.++...+.  .+.++++.++.++++++.+.+.|++.  +
T Consensus       250 GlRvG~~i~~~--------~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~L~~~--~  317 (393)
T TIGR03538       250 GLRSGFVAGDA--------EILKAFLRYRTYHGCAMPIPTQLASIAAWN--DEQHVRENRALYREKFAAVLEILGQV--L  317 (393)
T ss_pred             ccceEEEecCH--------HHHHHHHHHHHhhccCcCHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHHHHHHhh--C
Confidence            99999999998        89998887654 234678999999888886  46789999999999999999999874  2


Q ss_pred             ccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--------CCeEEEEeecChHHHHHHHHHH
Q 042445          164 TCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--------KDWLRITFAVEPSALENGLGRM  235 (246)
Q Consensus       164 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--------~~~iRls~~~~~~~l~~~~~~l  235 (246)
                      . +..|++|+|+|++++.       ++.+++..+++++||.+.||..|+.        .+++|++++.+++++++++++|
T Consensus       318 ~-~~~p~gg~f~~~~~~~-------~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~Ris~~~~~~~l~~~l~~l  389 (393)
T TIGR03538       318 D-LELPDAGFYLWPKVPG-------DDEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIALVAPLEECVEAAERI  389 (393)
T ss_pred             c-ccCCCeeEEEEEECCC-------CHHHHHHHHHHHCCEEEeCCccccccccCCCCCCCEEEEEecCCHHHHHHHHHHH
Confidence            3 4579999999999871       3566777777789999999998851        5799999998899999999999


Q ss_pred             HHH
Q 042445          236 KAF  238 (246)
Q Consensus       236 ~~~  238 (246)
                      .++
T Consensus       390 ~~~  392 (393)
T TIGR03538       390 RSF  392 (393)
T ss_pred             HHh
Confidence            875

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=100.00  E-value=1.8e-36  Score=261.11  Aligned_cols=217  Identities=15%  Similarity=0.195  Sum_probs=177.2

Q ss_pred             hhhhhhhccc----ccc-CCcCCCccCCChhhHHHHHHHHHHc-CCEEEEccccCCcccCCCCCccccccCCcccEEEEc
Q 042445            2 ELINQDITRE----FSD-FQVFHVGSGFSGSFVSPIAETAKKL-GIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLG   75 (246)
Q Consensus         2 e~~~~~~~~~----~~~-~p~NPtG~~~~~~~~~~l~~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~   75 (246)
                      |.+++.++.+    +++ |||||||.++|.+++++|+++|+++ |++||+||+|.++.+++. ...+. . ..+++++++
T Consensus       202 ~~l~~~~~~~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~-~~~~~-~-~~~~vi~~~  278 (431)
T PRK15481        202 EKLERALAQGARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPY-HSVIP-Q-TTQRWALIR  278 (431)
T ss_pred             HHHHHHHhcCCCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCC-CCCCc-C-CCCCEEEEe
Confidence            3455544332    555 9999999999999999999999999 999999999999986532 22221 1 235899999


Q ss_pred             ccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHH
Q 042445           76 SISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADKC  153 (246)
Q Consensus        76 s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l  153 (246)
                      ||||.|+ ||+|+||+++++        ++++.+...... ..++|.+.|.++..+|+++. +.++++.++.++++++.+
T Consensus       279 SfSK~~~-~GlRiG~~i~~~--------~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~~r~~~  349 (431)
T PRK15481        279 SVSKALG-PDLRLAFVASDS--------ATSARLRLRLNSGTQWVSHLLQDLVYACLTDPEYQARLAQARLFYAQRRQKL  349 (431)
T ss_pred             eeccccC-CCceeEEEeCCH--------HHHHHHHHHHhccccCCCHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHH
Confidence            9999998 999999999998        888888765433 33689999999999999754 578999999999999999


Q ss_pred             HHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC---CCeEEEEeec-ChHHHH
Q 042445          154 CDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFAV-EPSALE  229 (246)
Q Consensus       154 ~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~iRls~~~-~~~~l~  229 (246)
                      .+.|++. ++. +..|++|+|+|++++..       +.+++. .|.++||.+.||..|+.   .+++|+|++. ++++++
T Consensus       350 ~~~L~~~-~~~-~~~p~gg~f~~~~l~~~-------~~~~~~-~l~~~gV~v~pg~~f~~~~~~~~iRis~~~~~~~~i~  419 (431)
T PRK15481        350 ARALQQY-GIA-IPSPGDGLNLWLPLDTD-------SQATAL-TLAKSGWLVREGEAFGVSAPSHGLRITLSTLNDAEIN  419 (431)
T ss_pred             HHHHHHc-CCc-cccCCCeEEEEEECCCC-------HHHHHH-HHHHCCcEEecCCccccCCCCCeEEEEcCCCChHHHH
Confidence            9999987 665 56899999999988631       445544 56689999999999864   3689999996 889999


Q ss_pred             HHHHHHHHHHH
Q 042445          230 NGLGRMKAFYD  240 (246)
Q Consensus       230 ~~~~~l~~~~~  240 (246)
                      +++++|.+++.
T Consensus       420 ~~~~~l~~~~~  430 (431)
T PRK15481        420 RLAADLHQALN  430 (431)
T ss_pred             HHHHHHHHHhc
Confidence            99999998863

>PRK05839 hypothetical protein; Provisional

Probab=100.00  E-value=2e-36  Score=256.28  Aligned_cols=203  Identities=25%  Similarity=0.343  Sum_probs=168.9

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCcccccc------CCcccEEEEcccccccccCC
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVF------GSIVPLLTLGSISKRGIVPG   85 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~------~~~~~~i~~~s~sK~~~~~g   85 (246)
                      +++|||||||.++|.+++++|+++|+++|++||+||+|.++.+++ .+.++...      ...+++|+++||||.|++||
T Consensus       160 ~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~-~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~G  238 (374)
T PRK05839        160 ILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSEIYENT-PPPSLLEASILVGNESFKNVLVINSISKRSSAPG  238 (374)
T ss_pred             EEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEEeccchhhcccCC-CCCCHhhhhcccCccccCcEEEEeccccccCCcc
Confidence            788999999999999999999999999999999999999986543 23332211      13368999999999999999


Q ss_pred             ceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCc
Q 042445           86 LRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCIT  164 (246)
Q Consensus        86 ~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~  164 (246)
                      +|+||+++++        ++++.+..... ...+.+.+.|.++..++.  .+.++++.++.++++++.+.+.|    ++.
T Consensus       239 lRiG~ii~~~--------~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~l----~~~  304 (374)
T PRK05839        239 LRSGFIAGDA--------SILKKYKAYRTYLGCASPLPLQKAAAVAWL--DDEHAEFFRNIYAKNLKLAREIL----GIT  304 (374)
T ss_pred             ceeEEEecCH--------HHHHHHHHHHhhcCCCCChHHHHHHHHHhc--cchHHHHHHHHHHHHHHHHHHhc----CCC
Confidence            9999999987        89998887754 233678889999888876  36788888999999999888765    222


Q ss_pred             cccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC----CCeEEEEeecChHHHHHHHHHHHHHHH
Q 042445          165 CPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL----KDWLRITFAVEPSALENGLGRMKAFYD  240 (246)
Q Consensus       165 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----~~~iRls~~~~~~~l~~~~~~l~~~~~  240 (246)
                         .|++|+|+|++++.        +.+++..+++++||.+.||..|+.    ++++|+|++.+++++++++++|.++++
T Consensus       305 ---~p~gg~fi~~~~~~--------~~~~~~~l~~~~gi~v~pg~~f~~~~~~~~~iRis~~~~~~~~~~~l~~l~~~l~  373 (374)
T PRK05839        305 ---IPPATFYVWLPVDN--------DEEFTKKLYQNEGIKVLPGSFLGRNGIGKGYVRIALVYDTPKLEKALEIIKTYLE  373 (374)
T ss_pred             ---CCCeeEEEEEeCCC--------hHHHHHHHHHHCCEEEeCchhhCCCCCCCCeEEEEecCCHHHHHHHHHHHHHHhh
Confidence               68999999998862        567777777779999999988764    589999999889999999999999875

>PRK08175 aminotransferase; Validated

Probab=100.00  E-value=3.7e-36  Score=256.59  Aligned_cols=218  Identities=20%  Similarity=0.272  Sum_probs=182.9

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      ++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++....++..+.. .+++++++||||.||+||+|+||
T Consensus       169 ~i~~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~pGlRiG~  248 (395)
T PRK08175        169 ILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSYNMAGWRIGF  248 (395)
T ss_pred             EEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCCcccCEEEEeeccccccCcchhhee
Confidence            77899999999999999999999999999999999999999887654445444432 45789999999999999999999


Q ss_pred             EEeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445           91 LVTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKP  169 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~  169 (246)
                      +++++        ++++.+...... ..+++.+.|.++..++.. .+.++++.++.++++++.+.+.|++. ++. +..|
T Consensus       249 ~~~~~--------~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~-~~~p  317 (395)
T PRK08175        249 MVGNP--------ELVSALARIKSYHDYGTFTPLQVAAIAALEG-DQQCVRDIAEQYKRRRDVLVKGLHEA-GWM-VEMP  317 (395)
T ss_pred             eeCCH--------HHHHHHHHHHhhcccCCCcHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHc-CCc-ccCC
Confidence            99988        899988876542 336788899999998874 46789999999999999999999987 565 5678


Q ss_pred             CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHHHHHHHHH
Q 042445          170 EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       170 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l~~~~~~~  242 (246)
                      ++|+|+|++++...  ...++.+++.++++++||.|.||..|+.  ++++|++++.+++.+++++++|.+++++.
T Consensus       318 ~~g~~i~i~l~~~~--~~~~~~~~~~~l~~~~gv~v~p~~~f~~~~~~~lRis~~~~~~~~~~al~~l~~~l~~~  390 (395)
T PRK08175        318 KASMYVWAKIPEPY--AAMGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALIENRDRIRQAIRGIKAMFRAD  390 (395)
T ss_pred             CEEEEEEEECCccc--CCCCHHHHHHHHHHhCCEEEeCchhhCcCCCCeEEEEeCCCHHHHHHHHHHHHHHHHhc
Confidence            99999999997532  0013567777778889999999998865  57999999888999999999999998753

>PRK07777 aminotransferase; Validated

Probab=100.00  E-value=4.3e-36  Score=255.62  Aligned_cols=224  Identities=19%  Similarity=0.313  Sum_probs=183.7

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEcc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGS   76 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s   76 (246)
                      |.+++.+.++    ++++||||||.++|.+++++|+++|+++++++|+||+|.++.+++..+.++..+.. .+++++++|
T Consensus       150 ~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S  229 (387)
T PRK07777        150 DALRAAVTPRTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISS  229 (387)
T ss_pred             HHHHHhcCcccEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEEee
Confidence            3444444433    88899999999999999999999999999999999999999986654445544432 568999999


Q ss_pred             cccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445           77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD  155 (246)
Q Consensus        77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  155 (246)
                      |||.|++||+|+||+++++        ++++.+..... ....++.+.|.++..++.. .+.++++.++.++++++.+.+
T Consensus       230 ~SK~~g~~GlRiG~~~~~~--------~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~  300 (387)
T PRK07777        230 AAKTFNVTGWKIGWACGPA--------PLIAAVRAAKQYLTYVGGAPFQPAVAHALDH-EDAWVAALRDSLQAKRDRLAA  300 (387)
T ss_pred             chhhccCcCceeEEEecCH--------HHHHHHHHHHhhcccCCCCHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998        88888877644 2336788889998888875 367889999999999999999


Q ss_pred             HhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC-----CCeEEEEeecChHHHHH
Q 042445          156 RLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-----KDWLRITFAVEPSALEN  230 (246)
Q Consensus       156 ~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-----~~~iRls~~~~~~~l~~  230 (246)
                      .|+++ ++. +..|++++|+|++++...   ..++.+++..+++++||.|.||..|+.     .+++|++++.+++++++
T Consensus       301 ~L~~~-~~~-~~~~~g~~~~~~~~~~~~---~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~~~~~~~~l~~  375 (387)
T PRK07777        301 GLAEA-GFE-VHDSAGTYFLCADPRPLG---YDDGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFAFCKRDDTLDE  375 (387)
T ss_pred             HHHhC-CCC-ccCCCcceEEEecccccC---CCCHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEEecCCHHHHHH
Confidence            99987 666 567889999998875311   114677777777789999999998853     46899999999999999


Q ss_pred             HHHHHHHHH
Q 042445          231 GLGRMKAFY  239 (246)
Q Consensus       231 ~~~~l~~~~  239 (246)
                      ++++|.++.
T Consensus       376 ~l~~l~~~~  384 (387)
T PRK07777        376 AIRRLRALR  384 (387)
T ss_pred             HHHHHHHHh
Confidence            999998865

>PRK06290 aspartate aminotransferase; Provisional

Probab=100.00  E-value=4.8e-36  Score=256.26  Aligned_cols=216  Identities=21%  Similarity=0.262  Sum_probs=175.5

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      +++|||||||.++|.+++++|+++|++||++||+||+|.++.+++. +.++..+.. .+++|+++||||.|++||+|+||
T Consensus       184 ~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~-~~s~~~~~~~~~~~I~i~SfSK~~g~~GlRiG~  262 (410)
T PRK06290        184 YLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGK-PLSFLSVPGAKEVGVEIHSLSKAYNMTGWRLAF  262 (410)
T ss_pred             EEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCC-CcChhcCCCccccEEEEeechhhcCCchhheEe
Confidence            8889999999999999999999999999999999999999988653 334333432 45789999999999999999999


Q ss_pred             EEeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445           91 LVTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKP  169 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~  169 (246)
                      +++++        ++++.+...... ..+++.+.|.++..++++  ..++++.++.++++++.+.+.|++. |+. +..|
T Consensus       263 ii~~~--------~l~~~l~~~~~~~~~~~~~~~q~aa~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~p  330 (410)
T PRK06290        263 VVGNE--------LIVKAFATVKDNNDSGQFIAIQKAGIYALDH--PEITEKIREKYSRRLDKLVKILNEV-GFK-AEMP  330 (410)
T ss_pred             EEeCH--------HHHHHHHHHHhccccCCcHHHHHHHHHHhhC--cHHHHHHHHHHHHHHHHHHHHHHhC-CCe-ecCC
Confidence            99988        899988877543 335567899999999984  4678899999999999999999987 666 5678


Q ss_pred             CCceEEEEEeccccccC--CCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec---ChHHHHHHHHHHHHHHHHH
Q 042445          170 EGSMFVMVKLNYSLLEG--INSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV---EPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       170 ~~g~~~~~~~~~~~~~~--~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~---~~~~l~~~~~~l~~~~~~~  242 (246)
                      +||+|+|++++.....+  ..++.+++..++++.++.+.||..|  .+++|++++.   ++++.++.++.|.+.+.+.
T Consensus       331 ~g~f~l~v~lp~~~~~~~~~~~~~~~~~~Ll~~~~v~~~p~~~~--~~~lRi~~~~~~~~~~~~~~~~~~l~~~~~~~  406 (410)
T PRK06290        331 GGTFYLYVKAPKGTKSGIKFENAEEFSQYLIKEKLISTVPWDDA--GHFLRFSVTFEAKDEEEEDRILEEIKRRLSDV  406 (410)
T ss_pred             CeeeEEEEECCCccccCCCCCCHHHHHHHHHHhCCEEEECCccc--cCeEEEEEEcccccccchhHHHHHHHHHHhhc
Confidence            99999999987532111  1246677777777778888898766  4799999994   6777888888888877654

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=100.00  E-value=9.1e-36  Score=250.37  Aligned_cols=206  Identities=18%  Similarity=0.348  Sum_probs=170.2

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      ++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++. ..++...+ .+++++++||||.||++|+|+||+
T Consensus       141 ~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~-~~~~~~~~-~~~~i~~~s~SK~~g~~GlRiG~~  218 (350)
T TIGR03537       141 WINYPHNPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGEP-PHSALEVG-IENVLAFHSLSKRSGMTGYRSGFV  218 (350)
T ss_pred             EEeCCCCCcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccCCC-CCchhhcC-cCCEEEEeecccccCCccccceee
Confidence            8889999999999999999999999999999999999998877653 33343333 358999999999999999999999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCC
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPE  170 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~  170 (246)
                      ++++        ++.+.++..... +.+.+++.|.++...+.  .+.++++.++.++++++.+.+.|++. ++. +..|+
T Consensus       219 ~~~~--------~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~--~~~~~~~~r~~l~~~~~~~~~~l~~~-g~~-~~~~~  286 (350)
T TIGR03537       219 AGDE--------KLISFLRKLRANFGVASPDFVQAAAKAAWS--DDNHVLERRKIFKRKRDLFIEFFNKV-GLE-YLYPD  286 (350)
T ss_pred             ecCH--------HHHHHHHHHHHhhccCCCHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHHHHHHHC-CCc-ccCCC
Confidence            9887        888888876443 33555578888877776  35678889999999999999999987 665 56889


Q ss_pred             CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHHHH
Q 042445          171 GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKA  237 (246)
Q Consensus       171 ~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l~~  237 (246)
                      +|+|+|++++...     ++.+++.. |.++||.+.||..|+.  ++++|++++.+++++++++++|++
T Consensus       287 g~~~~~~~~~~~~-----~~~~l~~~-L~~~gv~v~~g~~f~~~~~~~~Ri~~~~~~~~~~~~l~~~~~  349 (350)
T TIGR03537       287 ATFYLWVKVPSGI-----DAKDYALR-LLENGIVVAPGENFGSGEEGYVRVALVPTLEECEEALRLWER  349 (350)
T ss_pred             eEEEEEEECCCCC-----CHHHHHHH-HHHCCEEEcCchhhCCCCCCEEEEEecCCHHHHHHHHHHHhc
Confidence            9999999987532     35555554 5578999999999865  689999998788999999998875

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>PRK06358 threonine-phosphate decarboxylase; Provisional

Probab=100.00  E-value=1.3e-35  Score=249.72  Aligned_cols=206  Identities=18%  Similarity=0.252  Sum_probs=166.6

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      +++|||||||.++|.+++++|+++|+++|+++|+||+|.++.+++.....+..++..+++|+++||||.|++||+|+||+
T Consensus       146 ~~~~P~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~gl~G~RiG~l  225 (354)
T PRK06358        146 FLCNPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLENFKNLIIIRAFTKFFAIPGLRLGYG  225 (354)
T ss_pred             EEeCCCCCCCCccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhccCCCCEEEEEechhhccCcchhheee
Confidence            68999999999999999999999999999999999999999987644434444555679999999999999999999999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG  171 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~  171 (246)
                      ++++.       .+++.+......+ +++.+.|.++..+++  ...++++.++.++++++.+.+.|++++++. +..|+ 
T Consensus       226 v~~~~-------~~~~~~~~~~~~~-~~~~~~q~~~~~~l~--~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~-~~~~~-  293 (354)
T PRK06358        226 LTSNK-------NLAEKLLQMREPW-SINTFADLAGQTLLD--DKEYIKKTIQWIKEEKDFLYNGLSEFKGIK-VYKPS-  293 (354)
T ss_pred             ecCCH-------HHHHHHHHhCCCC-cchHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHhcCCCcE-EcCCc-
Confidence            98652       6778887775544 789999999999997  456788899999999999999999887765 44554 


Q ss_pred             ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHHHHHH
Q 042445          172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKAFY  239 (246)
Q Consensus       172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l~~~~  239 (246)
                      |.|+|++++.        ..++.. .|.++||.+.||..|+.  ++++|++++. .++.++.++.|.+++
T Consensus       294 g~f~~~~~~~--------~~~~~~-~l~~~gI~v~~~~~f~~~~~~~iRls~~~-~~~~~~l~~~l~~~~  353 (354)
T PRK06358        294 VNFIFFKLEK--------PIDLRK-ELLKKGILIRSCSNYRGLDENYYRVAVKS-REDNKKLLKALEVIL  353 (354)
T ss_pred             ceEEEEEcCc--------hHHHHH-HHHHCCeEEEECCCCCCCCCCEEEEEeCC-HHHHHHHHHHHHHHh
Confidence            5689988763        445555 45578999999999854  5799999984 444566666665543

>PRK09275 aspartate aminotransferase; Provisional

Probab=100.00  E-value=6e-36  Score=258.95  Aligned_cols=232  Identities=19%  Similarity=0.216  Sum_probs=176.2

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHH--cCCEEEEccccCCcccCCCCCccccccCCcccEEEEc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKK--LGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLG   75 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~--~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~   75 (246)
                      +.+++.++++    +++|||||||.++|.+++++|+++|++  +|++||+||+|.++.+.   +.++.... .+++|+++
T Consensus       232 ~~l~~~~~~~tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~---~~s~~~~~-~~~~I~v~  307 (527)
T PRK09275        232 SELEKLRDPSIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVDD---FRSLFAVL-PYNTILVY  307 (527)
T ss_pred             HHHHhhcCCCCCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhccc---ccCHHHhC-CCCEEEEe
Confidence            3455555443    889999999999999999999999965  49999999999998742   33333332 35899999


Q ss_pred             ccccccccCCceEEEEEeeCCCCCcchhhHHHHH--------------------------------HHH-hhhcCCCCch
Q 042445           76 SISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSI--------------------------------KIF-LNISSDPATF  122 (246)
Q Consensus        76 s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l--------------------------------~~~-~~~~~~~~~~  122 (246)
                      ||||.|+++|||+||+++++...+.   ++++.+                                +.. ...+.++|.+
T Consensus       308 SfSK~f~mtG~RlG~i~~~~~~v~~---~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~t~~~s~p  384 (527)
T PRK09275        308 SFSKYFGATGWRLGVIALHEDNVFD---KLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALNHTAGLSTP  384 (527)
T ss_pred             ehhhhccCcHhHHhhhhcCchhHHH---HHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHhhccCCCCH
Confidence            9999999999999999998731110   133322                                233 2235578888


Q ss_pred             HHHHH-----HHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEecccc-----------ccC
Q 042445          123 IQGAV-----PQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSL-----------LEG  186 (246)
Q Consensus       123 ~q~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~-----------~~~  186 (246)
                      .|.++     .+++.. .+.+.++.++.+++|++.+.+.|. . ++. ...|+|++|+|++++.-.           +..
T Consensus       385 ~Q~a~al~~~~all~~-~~~~~~~~~~~~~~Rr~~l~~~Lg-~-~~~-~~~p~g~fY~~~di~~~~~~~~g~~f~~~l~~  460 (527)
T PRK09275        385 QQVQMALFSLFALLDE-EDAYKKAMKDIIRRRYKALYEGLG-L-PEP-EDPNNAAYYTLIDLEEWAEKNYGKEFADYLKK  460 (527)
T ss_pred             HHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHHHHHHHcC-C-CCc-CCCCCeeEEEEEEhHHhhhhccCchhhhhhhc
Confidence            88873     344543 467899999999999999988883 2 222 247899999999886421           001


Q ss_pred             CCChHHHHHHHHHhcCeEEecCCCcCC-CCeEEEEeec-ChHHHHHHHHHHHHHHHHHhh
Q 042445          187 INSDMEFALKLAKEESVIVLPGITVGL-KDWLRITFAV-EPSALENGLGRMKAFYDRHAE  244 (246)
Q Consensus       187 ~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~iRls~~~-~~~~l~~~~~~l~~~~~~~~~  244 (246)
                      ..++.+++.+++++.||.+.||..|+. .+++|+|++. +++++.++.++|.++++++.+
T Consensus       461 ~~~~~~f~~~Ll~e~gV~v~PG~~Fg~~~~~vRis~a~~~~~~~~~~~~rl~~~l~~y~~  520 (527)
T PRK09275        461 NYSPVDLLFRLAEETGVVLLPGGGFGGPEWSVRVSLANLNEEDYAKIGKAIRKLLDEYYE  520 (527)
T ss_pred             cCCHHHHHHHHHhcCCEEEeCchhhCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHH
Confidence            125788999999999999999999986 6889999995 889999999999999988764

>PRK09440 avtA valine--pyruvate transaminase; Provisional

Probab=100.00  E-value=2.8e-35  Score=252.87  Aligned_cols=218  Identities=17%  Similarity=0.260  Sum_probs=171.8

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      +++|||||||+++|.+++++|+++|+++|++||+||+|..+.... .+..... ...+++|+++||||. ++||+|+||+
T Consensus       184 ~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~-~~~~~~~-~~~~~vI~~~SfSK~-~~pGlRiG~~  260 (416)
T PRK09440        184 CVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPFPGI-IFSEATP-LWNPNIILCMSLSKL-GLPGVRCGIV  260 (416)
T ss_pred             EEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccCCCc-chhhcCc-cccCCeEEEeccccc-CCCcceEEEE
Confidence            889999999999999999999999999999999999998543111 1111110 114689999999997 9999999999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhch-HHHHHH-HHHHHHHHHHHHHHHhhc-CCCCc-cc
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTE-EEFFSK-IIDILRETADKCCDRLKE-IPCIT-CP  166 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~-~~~~~~-~~~~~~~~~~~l~~~L~~-~~~~~-~~  166 (246)
                      ++++        ++++.+...... ..++|.+.|.++..++.++. ..+..+ .++.++++++.+.+.|++ ++++. .+
T Consensus       261 i~~~--------~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~l~~~~~~~  332 (416)
T PRK09440        261 IADE--------EIIEALSNMNGIISLAPGRLGPAIAAEMIESGDLLRLSETVIRPFYRQKVQLAIALLRRYLPDEPCLI  332 (416)
T ss_pred             eCCH--------HHHHHHHHHHHHhccCCCcHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCeEE
Confidence            9988        999988877543 34789999999999998654 344444 678889999999999976 44332 14


Q ss_pred             cCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC---------CCeEEEEeecChHHHHHHHHHHHH
Q 042445          167 KKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---------KDWLRITFAVEPSALENGLGRMKA  237 (246)
Q Consensus       167 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---------~~~iRls~~~~~~~l~~~~~~l~~  237 (246)
                      ..|+||+|+|++++...   . ++.++ .+.+.++||.+.||+.|+.         .+++|++++.+++++++++++|.+
T Consensus       333 ~~p~gg~fiw~~~~~~~---~-~~~~~-~~~l~~~gV~v~pg~~F~~~~~~~~~~~~~~iRis~~~~~~~l~~~i~~l~~  407 (416)
T PRK09440        333 HKPEGAIFLWLWFKDLP---I-TTEEL-YQRLKARGVLVVPGHYFFPGLDEDWPHAHQCIRMNYVQDDEEIEKGIAILAE  407 (416)
T ss_pred             ecCCCceEEEEECCCCC---C-CHHHH-HHHHHHCCEEEechHhhCCCCccccCCcCceEEEEecCCHHHHHHHHHHHHH
Confidence            68899999999987521   1 34455 4457889999999998843         258999998889999999999999


Q ss_pred             HHHHHhhc
Q 042445          238 FYDRHAEK  245 (246)
Q Consensus       238 ~~~~~~~~  245 (246)
                      ++++..++
T Consensus       408 ~~~~~~~~  415 (416)
T PRK09440        408 EVEKAYAE  415 (416)
T ss_pred             HHHHHhhc
Confidence            99886654

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=100.00  E-value=2.3e-35  Score=249.21  Aligned_cols=205  Identities=15%  Similarity=0.211  Sum_probs=170.5

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCcccccc---CCcccEEEEcccccccccCCceE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVF---GSIVPLLTLGSISKRGIVPGLRL   88 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~---~~~~~~i~~~s~sK~~~~~g~r~   88 (246)
                      +++|||||||.+++.+++++|+++|+++|++||+||+|.++.+++.....+...   ...+++++++||||.|++||+|+
T Consensus       153 ~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRi  232 (364)
T PRK07865        153 WLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQSNLAGYRA  232 (364)
T ss_pred             EEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCccceEEEEeechhccCCCceee
Confidence            778999999999999999999999999999999999999998875332222111   13468999999999999999999


Q ss_pred             EEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccc
Q 042445           89 GWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPK  167 (246)
Q Consensus        89 G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~  167 (246)
                      ||+++++        ++++.+..... ...+++++.|.++..++.+  +.++++.++.++++++.+.+.|++. |+. +.
T Consensus       233 G~i~~~~--------~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~  300 (364)
T PRK07865        233 GFVAGDP--------ALVAELLEVRKHAGMMVPAPVQAAMVAALGD--DAHVREQRERYARRRAVLRPALEAA-GFR-VD  300 (364)
T ss_pred             EEEecCH--------HHHHHHHHHHHhcCCCcCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHc-CCc-cc
Confidence            9999988        89998887643 3447899999999999974  6778889999999999999999987 666 56


Q ss_pred             CCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHHH
Q 042445          168 KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMK  236 (246)
Q Consensus       168 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l~  236 (246)
                      .|++|+|+|++++.        +...+.+.+.++||.+.||..|+.  ++++|++++.+++++++++++|.
T Consensus       301 ~~~~~~~~~~~~~~--------~~~~~~~~l~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~~~~~~~~l~  363 (364)
T PRK07865        301 HSEAGLYLWATRGE--------DCWDTVAWLAERGILVAPGDFYGPAGAQHVRVALTATDERIAAAVERLA  363 (364)
T ss_pred             CCCccEEEEEeCCC--------CHHHHHHHHHHCCEEEeCccccCcCCCCEEEEEecCCHHHHHHHHHHhh
Confidence            78899999987742        233345667899999999998864  68999999888899999999885

>PRK07550 hypothetical protein; Provisional

Probab=100.00  E-value=3.9e-35  Score=249.68  Aligned_cols=212  Identities=22%  Similarity=0.266  Sum_probs=176.4

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCcccccc-CCcccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVF-GSIVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~-~~~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      ++++||||||.++|.+++++|+++|+++|++||+||+|.++.+++....+.... +..+++++++||||.|+++|+|+||
T Consensus       168 ~~~~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~  247 (386)
T PRK07550        168 ALVTPNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPDWDDTLVHLYSFSKSYALTGHRVGA  247 (386)
T ss_pred             EEeCCCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCCccccEEEEecchhhccCcccceEe
Confidence            778999999999999999999999999999999999999987654222222222 2345899999999999999999999


Q ss_pred             EEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445           91 LVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKP  169 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~  169 (246)
                      +++++        ++++.+..... .+.++|.++|.++..++.. .++++++.++.++++++.+.+.|+.++++.  ..+
T Consensus       248 i~~~~--------~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~--~~~  316 (386)
T PRK07550        248 VVASP--------ARIAEIEKFMDTVAICAPRIGQIAVAWGLPN-LADWRAGNRAEIARRRDAFRAVFARLPGWE--LLA  316 (386)
T ss_pred             eecCH--------HHHHHHHHHHhhcccCCCcHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHHhCCCce--eCC
Confidence            99988        88888887754 3446799999999999974 478888999999999999999998875654  357


Q ss_pred             CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeec-ChHHHHHHHHHHHHH
Q 042445          170 EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAV-EPSALENGLGRMKAF  238 (246)
Q Consensus       170 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~-~~~~l~~~~~~l~~~  238 (246)
                      .+|+|+|++++...    .++.+++..+++++||.+.||..|+.  ++++|++++. +++++++++++|.++
T Consensus       317 ~g~~~~~~~~~~~~----~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~~~~~~~~l~~~  384 (386)
T PRK07550        317 SGAYFAYVRHPFPD----RPSREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFANADVAGIGELVERLRAF  384 (386)
T ss_pred             CceEEEEecCCCCC----CCHHHHHHHHHHhcCEEEeCchhhCCCCCCEEEEEeecCCHHHHHHHHHHHHhh
Confidence            89999999886421    14677777778889999999999865  6899999996 888999999999875

>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase

Probab=100.00  E-value=2.8e-35  Score=254.49  Aligned_cols=231  Identities=17%  Similarity=0.170  Sum_probs=173.6

Q ss_pred             hhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHc--CCEEEEccccCCcccCCCCCccccccCCcccEEEEcc
Q 042445            3 LINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKL--GIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGS   76 (246)
Q Consensus         3 ~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~--~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s   76 (246)
                      .+++.++++    +++|||||||.++|.+++++|+++|++|  |++||+||+|.++.+.   +.++.... .+++|+++|
T Consensus       232 ~l~~~~~~~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~---~~sl~~~~-~~~vI~v~S  307 (521)
T TIGR03801       232 ELEKLRDPSIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVDD---FRSLFAEL-PYNTIGVYS  307 (521)
T ss_pred             HHHHhcCCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhccc---ccchhhhC-CCCEEEEEc
Confidence            444444433    7799999999999999999999999987  8999999999988752   33433332 358999999


Q ss_pred             cccccccCCceEEEEEeeCCCCCcchhhHHHH--------H------------------------HHHh-hhcCCCCchH
Q 042445           77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDS--------I------------------------KIFL-NISSDPATFI  123 (246)
Q Consensus        77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~--------l------------------------~~~~-~~~~~~~~~~  123 (246)
                      |||.|+++|||+||+++++...+.   ++++.        +                        +... ..+.+++.+.
T Consensus       308 fSK~fg~~G~RlG~i~~~~~~v~d---~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~g~s~p~  384 (521)
T TIGR03801       308 FSKYFGATGWRLGTIALHKDNIFD---KLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTAGLSTPQ  384 (521)
T ss_pred             chhhccCchhhhhhhhcCchHHHH---HHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccCCCCcHH
Confidence            999999999999999998731000   12211        1                        2222 2244677777


Q ss_pred             HH-----HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEeccccc-----------cCC
Q 042445          124 QG-----AVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLL-----------EGI  187 (246)
Q Consensus       124 q~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~-----------~~~  187 (246)
                      |.     ++.+++.. .+.|.++.++.+++|++.+.+.| .+ .+. ..+|+|++|+|++++.-..           ...
T Consensus       385 Q~q~al~a~~all~~-~~~y~~~~~~~~~~R~~~l~~~L-g~-~~~-~~~~~g~~Y~~~di~~~~~~~~~~~f~~~l~~~  460 (521)
T TIGR03801       385 QVQMALFSLFALMDK-ENAYKAETKDICRRREKLLFRGL-GL-PLQ-EDPNDVAYYTLIDLEEWAEKNYGEEFSSYLKKN  460 (521)
T ss_pred             HHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHHhc-CC-CCc-CCCCCeEEEEEeehHHHHHHhcchHHHHHHhcc
Confidence            76     34445543 46799999999999999999988 22 122 2468999999999874210           001


Q ss_pred             CChHHHHHHHHHhcCeEEecCCCcCC-CCeEEEEeec-ChHHHHHHHHHHHHHHHHHhh
Q 042445          188 NSDMEFALKLAKEESVIVLPGITVGL-KDWLRITFAV-EPSALENGLGRMKAFYDRHAE  244 (246)
Q Consensus       188 ~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~iRls~~~-~~~~l~~~~~~l~~~~~~~~~  244 (246)
                      .++.+++.+++++.||.+.||..|+. .+++|+|++. +++++.++.++|.++++++.+
T Consensus       461 ~~~~~~~~~L~~e~gV~v~PG~~Fg~~~~~vRisla~l~~~~~~~~~~rl~~~~~~~~~  519 (521)
T TIGR03801       461 YSPVDVLFRLAEETGIVLLPGGGFGGPEWSVRVSLANLNEYDYAEIGRAIRKILDEYYE  519 (521)
T ss_pred             CCHHHHHHHHHHhCCEEEeCchhcCCCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHH
Confidence            14788999999999999999999987 5789999994 899999999999999988764

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=100.00  E-value=2.1e-35  Score=249.45  Aligned_cols=207  Identities=28%  Similarity=0.438  Sum_probs=177.4

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCcc-ccccCCcccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVS-MGVFGSIVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~-~~~~~~~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      ++++||||||.++|.+++++|+++|++||+++|+||+|.++.++...+.+ ...+....++++++|+||.||++|+|+||
T Consensus       153 ~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRvG~  232 (363)
T PF00155_consen  153 LICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGDPDFGPIRSLLDEDDNVIVVGSLSKSFGLPGLRVGY  232 (363)
T ss_dssp             EEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSSHTHHHHGHHTTTSTEEEEEESTTTTTSGGGTEEE
T ss_pred             eecccccccccccccccccchhhhhcccccceeeeeceeccccCCCccCcccccccccccceeeeecccccccccccccc
Confidence            88999999999999999999999999999999999999999988654433 44455556799999999999999999999


Q ss_pred             EEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchH--HHHHHHHHHHHHHHHHHHHHhhcCCCCccccC
Q 042445           91 LVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEE--EFFSKIIDILRETADKCCDRLKEIPCITCPKK  168 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~  168 (246)
                      +++++        ++++.++.....+ ..+.+.|.++..++.+...  +++++.++.++++++.+.+.|++. ++. +..
T Consensus       233 i~~~~--------~~~~~l~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-~~~-~~~  301 (363)
T PF00155_consen  233 IVAPP--------ELIERLRRFQRSG-LSSSPMQAAAAAALSDPELVEKWLEELRERLRENRDLLREALEEI-GIT-VLP  301 (363)
T ss_dssp             EEEEH--------HHHHHHHHHHHHT-TSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSE-EEH
T ss_pred             ccchh--------hhhhhhhhccccc-cccchhhHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHHh-hhh-eee
Confidence            99988        9999998886655 3499999999999986553  499999999999999999999988 777 466


Q ss_pred             CCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEe-ecChHHHHHHHHHH
Q 042445          169 PEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITF-AVEPSALENGLGRM  235 (246)
Q Consensus       169 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~-~~~~~~l~~~~~~l  235 (246)
                      +++|+|+|+.++..      ++.++...++++.||.+.||..|+.++++|+++ ..+++++++++++|
T Consensus       302 ~~~~~~~~~~~~~~------~~~~l~~~L~~~~gi~v~pg~~~~~~~~iRi~~a~~~~e~~~~~~~~l  363 (363)
T PF00155_consen  302 PEAGFFLWVRLDPN------DAEELAQELLEEYGILVRPGSYFGVPGYIRISLASHSEEDLEEALERL  363 (363)
T ss_dssp             HSBSSEEEEEESHH------HHHHHHHHHHHHHTEEEEEGGGGTSTTEEEEEGGCSCHHHHHHHHHHH
T ss_pred             ccCccEEEEEcccc------hHHHHHHHHHHhCCEEEEecCCCCCCCEEEEEeccCCHHHHHHHHhhC
Confidence            77999999988754      256777777776799999999999999999999 45999999999886

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=100.00  E-value=1.5e-34  Score=243.55  Aligned_cols=204  Identities=16%  Similarity=0.227  Sum_probs=168.9

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccc--c-CCcccEEEEcccccccccCCceE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGV--F-GSIVPLLTLGSISKRGIVPGLRL   88 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~--~-~~~~~~i~~~s~sK~~~~~g~r~   88 (246)
                      ++++||||||.++|.+++++|+++|+++|+++|+||+|.++.+++.....+..  . ...+++++++||||.|+++|+|+
T Consensus       147 ~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~R~  226 (357)
T TIGR03539       147 WLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSNLAGYRA  226 (357)
T ss_pred             EEeCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCccceecccCCCccccEEEEeccccccCCCceeE
Confidence            77899999999999999999999999999999999999998886543222211  0 12457999999999999999999


Q ss_pred             EEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccc
Q 042445           89 GWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPK  167 (246)
Q Consensus        89 G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~  167 (246)
                      ||+++++        ++++.+..... ...+++++.|.++..+|.  ...++++.+..++++++.+.+.|++. |+. +.
T Consensus       227 G~~i~~~--------~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~L~~~-g~~-~~  294 (357)
T TIGR03539       227 GFVAGDP--------ALVAELLTVRKHAGLMVPAPVQAAMVAALG--DDGHVAEQKARYAARRAQLKPALEKA-GFR-ID  294 (357)
T ss_pred             EEEecCH--------HHHHHHHHHHhhcccCCCHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHc-CCC-Cc
Confidence            9999988        88888876643 234789999999999997  35678888999999999999999886 666 57


Q ss_pred             CCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHH
Q 042445          168 KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRM  235 (246)
Q Consensus       168 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l  235 (246)
                      .|.+|+|+|++++.       ++.++ ...|.++||.+.||..|+.  ++++|++++.+++++++++++|
T Consensus       295 ~p~~~~~~~~~~~~-------~~~~~-~~~l~~~gV~v~pg~~f~~~~~~~iRis~~~~~~~i~~~~~~l  356 (357)
T TIGR03539       295 HSEAGLYLWATRGE-------DAWDT-VDRLAELGILVAPGDFYGPAGSQHVRVALTATDERIAAAVARL  356 (357)
T ss_pred             CCCccEEEEEECCC-------CHHHH-HHHHHhCCEEECCccccCCCCCCeEEEEecCCHHHHHHHHHhh
Confidence            88999999987743       13444 4567899999999998764  6899999998889999999876

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=100.00  E-value=8.3e-35  Score=242.80  Aligned_cols=202  Identities=13%  Similarity=0.132  Sum_probs=156.8

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      +++|||||||.++|.+++++|+++|+++|++||+||+|.++.+++. ..........+++|+++||||.|++||+|+||+
T Consensus       127 ~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~-~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiGy~  205 (332)
T PRK06425        127 FIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNRA-EEDVLLNRSYGNVIIGRSLTKILGIPSLRIGYI  205 (332)
T ss_pred             EEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhccccccc-hhHHHHhccCCCEEEEeecHHhcCCchhhheee
Confidence            7889999999999999999999999999999999999999987542 222222344568999999999999999999999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCC
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADKCCDRLKEIPCITCPKKPE  170 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~  170 (246)
                      ++++        ++++.+......+ .++.+.+.    ++.... +.++++.++.++++++.+.+.|+++ ++. +..+.
T Consensus       206 v~~~--------~li~~l~~~~~~~-~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~-~~~~~  270 (332)
T PRK06425        206 ATDD--------YNMKISRKITEPW-SVCDPAID----FIRSIDLDYVAKHSLDIMENERSYLINNLEAM-GFR-AAGDP  270 (332)
T ss_pred             ecCH--------HHHHHHHHcCCCC-ccCHHHHH----HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHC-CCE-ECCCC
Confidence            9998        9999888765433 34444332    333222 5677888999999999999999987 565 34456


Q ss_pred             CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHHHHHH
Q 042445          171 GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKAFY  239 (246)
Q Consensus       171 ~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l~~~~  239 (246)
                      +|+|+|++++        ++.++... |.++||.++||..|+.  ++++|++++. .++.+..++.|++++
T Consensus       271 ~g~f~~~~~~--------~~~~~~~~-l~~~gi~v~~~~~f~~~~~~~iRis~~~-~~~~~~l~~al~~~~  331 (332)
T PRK06425        271 SANFITFMIP--------DAHDFYSY-LLKNGILVRLLDDYECLGEQYIRIAIRR-RSFNIKLVNALRNFL  331 (332)
T ss_pred             CceEEEEEcC--------CHHHHHHH-HHHCCeEEEECCCCCCCCCCEEEEEeCC-HHHHHHHHHHHHHHh
Confidence            7889998875        15555554 5568999999998854  5799999995 455677777776553

>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-34  Score=233.42  Aligned_cols=222  Identities=21%  Similarity=0.292  Sum_probs=188.7

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccC-----CcccEEEEcccccccccCCc
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFG-----SIVPLLTLGSISKRGIVPGL   86 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-----~~~~~i~~~s~sK~~~~~g~   86 (246)
                      +++||+||.|++++++++..+++++.++|+.+|+||+|+..+|+..++.++..+.     ..+++.++.|+||-||+||+
T Consensus       231 litNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~sVF~~~~F~Sv~ev~~~~~~~~~rvHivyslSKD~GlpGf  310 (471)
T KOG0256|consen  231 LITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAGSVFDKSEFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLPGF  310 (471)
T ss_pred             EEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhcccccCccCceEHHHHhhccccCCCcEEEEEEeccccCCCce
Confidence            9999999999999999999999999999999999999999999988888875552     34679999999999999999


Q ss_pred             eEEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhch--HHHHHHHHHHHHHHHHHHHHHhhcCCCCc
Q 042445           87 RLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTE--EEFFSKIIDILRETADKCCDRLKEIPCIT  164 (246)
Q Consensus        87 r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~  164 (246)
                      |+|.+.+.++       +++....+...++ .+|+..|..++.+|++..  +.|+.+.+.+++.+.+.+.+.|+++ ||.
T Consensus       311 RvGviYS~ne-------~VvsaA~kmssf~-~vSs~tQ~~la~LLSD~~f~~~yl~en~~Rl~~rh~~~~~gLk~l-gI~  381 (471)
T KOG0256|consen  311 RVGVIYSNNE-------DVVSAATKMSSFG-LVSSQTQYLLASLLSDEEFTREYLRENNKRLRIRHRYIVEGLKAL-GIP  381 (471)
T ss_pred             EEEEEEecCh-------HHHHHHHHHhhcc-CCcHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhHHhc-CCc
Confidence            9999999985       6666666665555 899999999999999754  6899999999999999999999998 777


Q ss_pred             cccCCCCceEEEEEecccccc-CCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeec-ChHHHHHHHHHHHHHHH
Q 042445          165 CPKKPEGSMFVMVKLNYSLLE-GINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAV-EPSALENGLGRMKAFYD  240 (246)
Q Consensus       165 ~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~-~~~~l~~~~~~l~~~~~  240 (246)
                       ....++|+|+|+++...--. ......+++.+++.+-++.+.||..|.+  +||+|++|+. .++.++-+++||+.++.
T Consensus       382 -cl~s~AGlF~wvDlr~lL~s~tfe~El~Lw~~i~~~vklnlSpG~s~~C~EpGWFRvcFAn~~~~t~~~am~Ri~~~~~  460 (471)
T KOG0256|consen  382 -CLKSNAGLFCWVDLRKLLTSLTFEGELELWERILDNVKLNLSPGSSCHCHEPGWFRVCFANMSEETLEVAMRRLKQFLD  460 (471)
T ss_pred             -eeecCCeeEEEEEhHHhcCcCChHHHHHHHHHHHHhhccccCCCCcceecCCCeEEEEeccCCHHHHHHHHHHHHHHHH
Confidence             57889999999998642100 1112455667777666999999999887  8999999997 66666669999999997


Q ss_pred             HHh
Q 042445          241 RHA  243 (246)
Q Consensus       241 ~~~  243 (246)
                      .+.
T Consensus       461 ~~~  463 (471)
T KOG0256|consen  461 SQV  463 (471)
T ss_pred             hhh
Confidence            654

>PRK07392 threonine-phosphate decarboxylase; Validated

Probab=100.00  E-value=1.2e-34  Score=244.55  Aligned_cols=200  Identities=16%  Similarity=0.238  Sum_probs=160.0

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      +++|||||||.+++.++   |.++++++++ +|+||+|.++.+++........++..+++|+++||||.|++||+|+||+
T Consensus       153 ~l~nP~NPTG~~~~~~~---l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~~  228 (360)
T PRK07392        153 LLNNPHNPTGKLWSREA---ILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEYPNLIILRSLTKFYSLPGLRLGYA  228 (360)
T ss_pred             EEeCCCCCCCCCcCHHH---HHHHHHHCCE-EEEECchhhhccCccccchHHHhhcCCCEEEEEechhhhcCCchheeee
Confidence            88999999999999665   4555677885 6669999999876533322333455568999999999999999999999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG  171 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~  171 (246)
                      ++++        ++++.+......+ ++|.+.|.++..++++  ..+.++.++.++++++.+.+.|++++++..  .|.+
T Consensus       229 v~~~--------~~~~~~~~~~~~~-~~s~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~--~~~~  295 (360)
T PRK07392        229 IAHP--------DRLQRWQQWRDPW-PVNGLAAAAAIAALAD--RDFQQQTWAWLPPAREALFQGLASLPGLTP--LPSA  295 (360)
T ss_pred             eCCH--------HHHHHHHhhCCCC-CCCHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHHHHhCCCcEE--CCCC
Confidence            9988        8888887665433 7899999999999984  467777788899999999999998878763  4688


Q ss_pred             ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecC--hHHHHHHHHHH
Q 042445          172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVE--PSALENGLGRM  235 (246)
Q Consensus       172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~--~~~l~~~~~~l  235 (246)
                      |+|+|++++.       ++.++...+++++||.+.||..|+.  ++++|++++.+  .+.+.++++++
T Consensus       296 ~~fl~~~~~~-------~~~~l~~~ll~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~~~l~~al~~~  356 (360)
T PRK07392        296 ANFLLVQSQG-------SALQLQEKLLQQHRILIRDCLSFPELGDRYFRVAVRTEAENQRLLEALAAI  356 (360)
T ss_pred             CCEEEEEcCC-------CHHHHHHHHHhhCCEEEEeCCCCCCCCCCEEEEEeCCHHHHHHHHHHHHHH
Confidence            9999988753       2567777777889999999999975  58999999973  35666666654

>PRK06959 putative threonine-phosphate decarboxylase; Provisional

Probab=100.00  E-value=6e-34  Score=237.95  Aligned_cols=202  Identities=9%  Similarity=0.064  Sum_probs=165.7

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      +++|||||||.++|.+++++|++.|.+++.++|+||+|.++...    .++..+...+++++++||||.|++||+|+||+
T Consensus       135 ~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~----~s~~~~~~~~~vi~l~SfSK~~gl~GlRiGy~  210 (339)
T PRK06959        135 IVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLPA----ASLAAHTDRPGLVVLRSVGKFFGLAGVRAGFV  210 (339)
T ss_pred             EEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCc----ccchhccCCCCEEEEecChhhcCCcchheEEE
Confidence            89999999999999999999999999999999999999998643    23333323467999999999999999999999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG  171 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~  171 (246)
                      ++++        ++++.+......+ ++|.+.|.++..+|+  +..+.++.++.++++++.+.+.|+++ |+..  . .+
T Consensus       211 v~~~--------~li~~l~~~~~~~-~vs~~~q~a~~~~L~--~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~--~-~~  275 (339)
T PRK06959        211 LAAP--------ALLAALRDALGAW-TVSGPARHAVRAAFA--DAAWQAAMRERLAADGARLAALLRAH-GFAV--H-AT  275 (339)
T ss_pred             ecCH--------HHHHHHHHhcCCC-CCcHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHHHHC-CCCc--c-Cc
Confidence            9998        9999998886655 689999999999998  35688889999999999999999997 5653  2 36


Q ss_pred             ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHHHHHHhh
Q 042445          172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRHAE  244 (246)
Q Consensus       172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~~~~~~  244 (246)
                      ++|+|++++.        ..++ ...|.++||.|++   |+..+++|++++.+.++.++.++.|+++++.+..
T Consensus       276 ~~f~~~~~~~--------~~~l-~~~l~~~GI~vr~---~~~~~~lRisi~~~~~e~~~l~~al~~~~~~~~~  336 (339)
T PRK06959        276 PLFSWTDDPR--------AAAL-HAALARRGIWTRY---FAPPPSVRFGLPADEAEWQRLEDALAECVPTLAA  336 (339)
T ss_pred             ceEEEEeCCC--------HHHH-HHHHHhCCeEEEE---CCCCCeEEEECCCCHHHHHHHHHHHHHHHHHHhh
Confidence            7999987641        3444 5567788999985   3446799999976667788888888887766543

>PRK04781 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=2.7e-34  Score=242.42  Aligned_cols=202  Identities=17%  Similarity=0.223  Sum_probs=161.4

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      +++|||||||.+++.++++++++.|+ ++++||+||+|.+|.+...   .....+..+++++++||||.|++||+|+||+
T Consensus       157 ~l~~p~NPTG~~~~~~~~~~l~~~~~-~~~~iI~Deay~~f~~~~~---~~~~~~~~~~vi~~~SfSK~~gl~GlRvGy~  232 (364)
T PRK04781        157 FLCSPSNPAGSAIALDQIERALQALQ-GKALVVVDEAYGEFSDVPS---AVGLLARYDNLAVLRTLSKAHALAAARIGSL  232 (364)
T ss_pred             EEcCCCCCCCCCcCHHHHHHHHHhCC-CCcEEEEeCcchhhcCCcc---hHHHHhhCCCEEEEecChhhcccccceeeee
Confidence            77899999999999999999999886 4899999999999885421   2222344578999999999999999999999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG  171 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~  171 (246)
                      ++++        ++++.+......+ ++|.+.|.++..+|.++...+..+..+.++++++.+.+.|++++++. ...|++
T Consensus       233 v~~~--------~l~~~l~~~~~~~-~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~-~~~p~~  302 (364)
T PRK04781        233 IANA--------ELIAVLRRCQAPY-PVPTPCAALAEQALSAPALAVTARRVAEVRAERERLHAALAQLPGVR-RVYPSQ  302 (364)
T ss_pred             eCCH--------HHHHHHHhccCCC-CCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-eECCCC
Confidence            9998        9999998876554 78999999999999865445566666678999999999999887764 246888


Q ss_pred             ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC-CCeEEEEeecChHHHHHHHHHHHH
Q 042445          172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-KDWLRITFAVEPSALENGLGRMKA  237 (246)
Q Consensus       172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~iRls~~~~~~~l~~~~~~l~~  237 (246)
                      |+|+|++++.        ..+ +.+.+.++||.|+||..|+. ++++|++++. +++.+..++.|++
T Consensus       303 g~f~~~~~~~--------~~~-~~~~l~~~gI~v~~~~~~~~~~~~~Ris~~~-~~~~~~l~~al~~  359 (364)
T PRK04781        303 GNFLLVRFDD--------AEA-AFQALLAAGVVVRDQRAAPRLSDALRITLGT-PEQNDRVLAALQR  359 (364)
T ss_pred             CcEEEEEcCC--------HHH-HHHHHHHCCeEEeeCCCCCCCCCeEEEeCCC-HHHHHHHHHHHHH
Confidence            9999998852        334 45667899999999987644 7899999995 3334555555544

>PRK05664 threonine-phosphate decarboxylase; Reviewed

Probab=100.00  E-value=1e-33  Score=236.02  Aligned_cols=197  Identities=13%  Similarity=0.122  Sum_probs=157.2

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      +++|||||||.++|.+++++|+++|+++|++||+||+|.++..    ..++..+...+++++++||||.|++||+|+||+
T Consensus       129 ~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~----~~s~~~~~~~~~vi~~~SfSK~~gl~GlRiG~~  204 (330)
T PRK05664        129 VVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDNTP----QHSLAACAHRPGLIVLRSFGKFFGLAGARLGFV  204 (330)
T ss_pred             EEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccCCC----cccccccccCCCEEEEeeccccccCCCcceEEE
Confidence            8899999999999999999999999999999999999987652    124444555678999999999999999999999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG  171 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~  171 (246)
                      ++++        ++++.+......+ ++|.+.|.++..+|.+  ..+.++.++.++++++.+.+.|+++ ++.    |.+
T Consensus       205 v~~~--------~l~~~~~~~~~~~-~~~~~~~~~~~~~L~~--~~~~~~~~~~~~~~r~~l~~~L~~~-~~~----~~~  268 (330)
T PRK05664        205 LAEP--------ALLRALAELLGPW-TVSGPTRWLAQAALAD--TPWQRRQRERLLAASQRLAALLRRH-GLT----PAG  268 (330)
T ss_pred             EeCH--------HHHHHHHHhcCCC-CCCHHHHHHHHHHHhC--hHHHHHHHHHHHHHHHHHHHHHHHC-CCc----ccC
Confidence            9998        9999998875544 6789999999999984  4567788899999999999999987 442    344


Q ss_pred             c--eEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHHHH
Q 042445          172 S--MFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYD  240 (246)
Q Consensus       172 g--~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~~  240 (246)
                      |  +|+|++++        ++.++ .+.|.++||.|.+   |+..+++|++++.+.++.++..+.|++..+
T Consensus       269 ~~~~f~~~~~~--------~~~~~-~~~l~~~gi~v~~---f~~~~~iRis~~~~~~~~~~l~~al~~~~~  327 (330)
T PRK05664        269 GCALFQWVRTE--------DAAAL-HEFLARRGILTRL---FEQPASLRFGLPADEADWARLDQALLAYRK  327 (330)
T ss_pred             CcceEEEEecC--------CHHHH-HHHHHHCCeEEEE---CCCCCeEEEECCCCHHHHHHHHHHHHHHHh
Confidence            4  77887653        24444 5567789999974   445789999999655556666666655543

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=100.00  E-value=4.2e-34  Score=240.74  Aligned_cols=205  Identities=20%  Similarity=0.255  Sum_probs=162.2

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      +++|||||||.+++.+++++|+++|+++|++||+||+|.++.+++..+.+.  +...+++++++||||.|+++|+|+||+
T Consensus       147 ~l~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~--~~~~~~~i~~~S~SK~~~~~G~RiG~~  224 (356)
T PRK08056        147 FLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQ--LADNPHLWVLRSLTKFYAIPGLRLGYL  224 (356)
T ss_pred             EEeCCcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHH--hccCCCEEEEEechhhccCcchhheee
Confidence            789999999999999999999999999999999999999998765322222  223458999999999999999999999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG  171 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~  171 (246)
                      ++++.       ++++.++.....+ ++|.+.|.++..++.  ...+.++.++.++++++.+.+.|++++++..  .|.+
T Consensus       225 v~~~~-------~~~~~l~~~~~~~-~~~~~~~~~a~~~l~--~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~--~~~~  292 (356)
T PRK08056        225 VNSDD-------AAVARMRRQQMPW-SINAFAALAGEVILQ--DRAYQQATWQWLAEEGARFYQALCALPLLTV--WPGR  292 (356)
T ss_pred             ecCCH-------HHHHHHHHhCCCC-chhHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHhcCCCcEE--cCCC
Confidence            98642       6777777654433 778899999998986  4577888899999999999999998877653  3557


Q ss_pred             ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHHHHHH
Q 042445          172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKAFY  239 (246)
Q Consensus       172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l~~~~  239 (246)
                      |+|+|++++..       +.+++. .|.++||.++||..|..  .+++|++++. +++.+..++.|.+++
T Consensus       293 ~~~~~~~~~~~-------~~~~~~-~l~~~gI~v~~~~~f~~~~~~~iRis~~~-~~~~~~l~~~l~~~~  353 (356)
T PRK08056        293 ANYLFLRCERP-------DIDLQR-ALLTQRILIRSCANYPGLDSRYYRVAIRS-AAENERLLAALRNVL  353 (356)
T ss_pred             CcEEEEEcCCC-------hHHHHH-HHHHCCeEEEECCCCCCCCCCEEEEEEcC-HHHHHHHHHHHHHHH
Confidence            89999887632       445544 55579999999998854  5799999984 444555555555543

>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]

Probab=100.00  E-value=9.8e-34  Score=230.46  Aligned_cols=224  Identities=23%  Similarity=0.354  Sum_probs=187.2

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCC--------CC-----------CccccccCCcccEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGN--------TP-----------FVSMGVFGSIVPLL   72 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~--------~~-----------~~~~~~~~~~~~~i   72 (246)
                      |++.+ ||||..+|.+.+++|+++|++|+++||+||+|..+.++.        .+           ..+...++.+++||
T Consensus       210 IPTgq-NPTG~tls~errk~iy~LArKyDfLIVeDdpYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVI  288 (472)
T KOG0634|consen  210 IPTGQ-NPTGNTLSLERRKKIYQLARKYDFLIVEDDPYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVI  288 (472)
T ss_pred             CcCCC-CCCCCccCHHHHHHHHHHHHHcCEEEEecCccceeeccccCCCccccCccccHHHHHHhhcCCcccccccccEE
Confidence            88888 999999999999999999999999999999999888772        11           11223446678999


Q ss_pred             EEcccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhchH----HHHHHHHHHHH
Q 042445           73 TLGSISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTEE----EFFSKIIDILR  147 (246)
Q Consensus        73 ~~~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~----~~~~~~~~~~~  147 (246)
                      .+.||||. .+||+|+||+.+++        .+++++...... +.++|.+.|..+.+.|+...+    +|+.+++..|.
T Consensus       289 r~dSFSKi-iaPGlRlG~it~~~--------~~l~ril~~ae~~t~~pSg~sq~iv~a~l~~wgqeG~~~wi~~l~~~Yt  359 (472)
T KOG0634|consen  289 RNDSFSKI-IAPGLRLGWITGNS--------LFLKRILDLAEVATSGPSGFSQGIVYAMLKRWGQEGFLRWIQHLRSSYT  359 (472)
T ss_pred             eccchhhh-hcCcceeEEeecCH--------HHHHHHhhhcceeecCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999 59999999999998        889988887664 447899999999999886543    89999999999


Q ss_pred             HHHHHHHHHhhc-CCCC-ccccCCCCceEEEEEeccccc---cCCCChHHHHHHHHHhcCeEEecCCCcCC------CC-
Q 042445          148 ETADKCCDRLKE-IPCI-TCPKKPEGSMFVMVKLNYSLL---EGINSDMEFALKLAKEESVIVLPGITVGL------KD-  215 (246)
Q Consensus       148 ~~~~~l~~~L~~-~~~~-~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~ll~~~gi~v~pg~~f~~------~~-  215 (246)
                      +|+..+..+|.+ +|.- -.+++|.+|+|+|++++-...   ++++.-++.+...+.++||.+++|+.|..      +. 
T Consensus       360 ~Rrn~~l~Al~kylp~~~~~~~~P~aGmFiwv~i~~~~~~~~~~i~q~~e~i~~~~vk~gV~~v~G~~F~v~p~~s~~ki  439 (472)
T KOG0634|consen  360 ERRNALLSALDKYLPKSVCEYHPPKAGMFIWVEIPYINFDTKKSINQIEEIIFIKAVKNGVKLVCGSWFMVDPESSWSKI  439 (472)
T ss_pred             HHHHHHHHHHHHhCCCCeeEEecCCcceEEEEEecccccccccchHHHHHHHHHHHHHCCeEEecCceeEEcCccCCCcc
Confidence            999999999987 7743 347899999999999972111   12223567788889999999999999864      23 


Q ss_pred             eEEEEeec-ChHHHHHHHHHHHHHHHHHhhc
Q 042445          216 WLRITFAV-EPSALENGLGRMKAFYDRHAEK  245 (246)
Q Consensus       216 ~iRls~~~-~~~~l~~~~~~l~~~~~~~~~~  245 (246)
                      ++|++++. +.+++++++++|..+++++...
T Consensus       440 ffRls~a~a~~e~l~~g~~rf~~~ike~f~~  470 (472)
T KOG0634|consen  440 FFRLSIAFAEPEKLDEGIERFGSVIKEHFIT  470 (472)
T ss_pred             eEEEEeecCCHHHHHHHHHHHHHHHHHHhhc
Confidence            99999996 8999999999999999987653

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=1.7e-34  Score=243.59  Aligned_cols=203  Identities=17%  Similarity=0.191  Sum_probs=165.6

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      ++++||||||.+++.+++.++++.|+ +|+++|+||+|.++.+++....++..++..+++++++||||.|+++|+|+||+
T Consensus       156 ~i~~p~NPtG~~~~~~~l~~~~~~~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~  234 (359)
T PRK03158        156 WICNPNNPTGTYVNHEELLSFLESVP-SHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVLRTFSKAYGLAALRVGYG  234 (359)
T ss_pred             EEeCCCCCCCCCCCHHHHHHHHHhCC-CCcEEEEECchHhhcCCcccccHHHHHHhcCCEEEEEechHhhcCcchhhehh
Confidence            77999999999999999999888775 69999999999998876533333344455678999999999999999999999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG  171 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~  171 (246)
                      ++++        ++++.+......+ ++|+++|.++..++.  ...++++.++.++++++.+.+.|++. ++..  .|.+
T Consensus       235 v~~~--------~~~~~~~~~~~~~-~~~~~~q~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~--~~~~  300 (359)
T PRK03158        235 IASE--------ELIEKLNIARPPF-NTTRIAQYAAIAALE--DQAFLKECVEKNAEGLEQYYAFCKEY-GLFY--YPSQ  300 (359)
T ss_pred             cCCH--------HHHHHHHHhcCCC-CCCHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHHHHHC-CCee--CCCc
Confidence            9998        9999888776544 789999999999997  35678888888899999999999887 6653  4567


Q ss_pred             ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHH
Q 042445          172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAF  238 (246)
Q Consensus       172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~  238 (246)
                      |+|+|++++.       ++.++.. .|.++||.+.||..|+.++++|++++ +.++.++.++.|+++
T Consensus       301 g~~i~~~~~~-------~~~~~~~-~l~~~gv~v~~g~~f~~~~~iRi~~~-~~~~~~~l~~al~~~  358 (359)
T PRK03158        301 TNFIFVDTGR-------DANELFE-ALLKKGYIVRSGAALGFPTGVRITIG-LKEQNDKIIELLKEL  358 (359)
T ss_pred             CcEEEEECCC-------CHHHHHH-HHHHCCeEEeeCCCCCCCCeEEEecC-CHHHHHHHHHHHHHh
Confidence            8999987742       2455555 45578999999999987899999998 566677777777664

>PRK08637 hypothetical protein; Provisional

Probab=100.00  E-value=8.4e-34  Score=241.49  Aligned_cols=218  Identities=17%  Similarity=0.193  Sum_probs=167.1

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHH-----cCCEEEEccccCCcccCCCCCccc-ccc-CCcccE--EEEcccccccc
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKK-----LGIMVIANEVYGHLAFGNTPFVSM-GVF-GSIVPL--LTLGSISKRGI   82 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~-----~~~~ii~De~y~~~~~~~~~~~~~-~~~-~~~~~~--i~~~s~sK~~~   82 (246)
                      +++|||||||.++|.+++++|+++|++     ||++||+||+|.++.+++....++ ..+ +..+++  ++++|+||.|+
T Consensus       151 ~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~  230 (388)
T PRK08637        151 ILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEF  230 (388)
T ss_pred             EEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecccchhcccCCccchhhHHHhhcccccceEEEeccccccCC
Confidence            788999999999999999999999875     899999999999999877544343 222 334464  55679999999


Q ss_pred             cCCceEEEEEeeCCCCCcchhhHHHHHHHH----h-hhcCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHH
Q 042445           83 VPGLRLGWLVTSDPNGILQDSGIVDSIKIF----L-NISSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADKCCDR  156 (246)
Q Consensus        83 ~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~----~-~~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~  156 (246)
                      +||+|+||++++....  .++++++.+...    . ....++|.+.|.++..++.++. ..++++.+..++++++.+.+.
T Consensus       231 ~pGlRlG~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~  308 (388)
T PRK08637        231 VWGFRVGFITFGTKAG--SSQTVKEALEKKVKGLIRSNISNGPHPSQSAVLRALNSPEFDKEKQEKFQILKERYEKTKEV  308 (388)
T ss_pred             CcccceEEEEEccccC--CcHHHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999752000  000666666542    1 1233789999999999998543 456777778899999999999


Q ss_pred             hhcCC---CCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec-ChHHHHHHH
Q 042445          157 LKEIP---CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV-EPSALENGL  232 (246)
Q Consensus       157 L~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~-~~~~l~~~~  232 (246)
                      |++.+   ++. +..|++|+|+|++++..      ++.+++..+++++||.+.+.    .++++||+++. +.+++++++
T Consensus       309 l~~~~~~~~~~-~~~~~~g~~~~~~l~~~------~~~~l~~~l~~~~gv~~~~~----~~~~iRi~~~~~~~~~i~~~~  377 (388)
T PRK08637        309 LYDGKYDDAWQ-AYPFNSGYFMCLKLKGV------DAEELRVHLLEKYGIGTIAL----NETDLRIAFSCVEEEDIPELF  377 (388)
T ss_pred             HHhhCCCCCcc-cccccceEEEEecCChH------HHHHHHHHHhhhcceEEEec----cCCceEEEeecCCHHHHHHHH
Confidence            87642   455 56789999999988631      35667666667889988753    26799999996 899999999


Q ss_pred             HHHHHHHHHH
Q 042445          233 GRMKAFYDRH  242 (246)
Q Consensus       233 ~~l~~~~~~~  242 (246)
                      ++|.++++++
T Consensus       378 ~~l~~~~~~~  387 (388)
T PRK08637        378 DSIYKAIKDL  387 (388)
T ss_pred             HHHHHHHHhc
Confidence            9999999764

>PLN02672 methionine S-methyltransferase

Probab=100.00  E-value=7.6e-34  Score=259.78  Aligned_cols=229  Identities=17%  Similarity=0.273  Sum_probs=177.4

Q ss_pred             hhhhhhhcc---c--cccCCc-CCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCc--cc----cccCC--
Q 042445            2 ELINQDITR---E--FSDFQV-FHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFV--SM----GVFGS--   67 (246)
Q Consensus         2 e~~~~~~~~---~--~~~~p~-NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~--~~----~~~~~--   67 (246)
                      +.+++.++.   .  +++||| ||||.++|.+++++|+++|++||++||+||+|.++.|++....  ++    ..++.  
T Consensus       818 d~Le~al~~~~~~~I~L~nPnhNPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~s  897 (1082)
T PLN02672        818 KTLASTLETVKKPWVYISGPTINPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSN  897 (1082)
T ss_pred             HHHHHHhccCCCCEEEEECcCCCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhcccc
Confidence            345665543   2  889997 9999999999999999999999999999999999998754321  11    11221  


Q ss_pred             -cccEEEEcccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHh-----hc-hHHHHH
Q 042445           68 -IVPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILE-----KT-EEEFFS  140 (246)
Q Consensus        68 -~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~-----~~-~~~~~~  140 (246)
                       ..++++++||||.|+++|+|+||+++++.       ++++.+....... .++++.|.++..++.     .. ...++.
T Consensus       898 ks~nVIvL~SfSKkf~lpGLRIGylIap~~-------eLi~~l~~~~~~s-~~~~~~q~Aaaaalall~~~~~~~~~~l~  969 (1082)
T PLN02672        898 PSFAVALLGGLSTELLSGGHEFGFLALNDS-------VLIDAFHSAPGLS-RPHSTLKYTIKKLLGLKNQKSSDLLDGVA  969 (1082)
T ss_pred             CCceEEEEeCcHHhhccHHHHheeEEeCCH-------HHHHHHHHhhhhc-CCCcHHHHHHHHHHHHHhccCcHHHHHHH
Confidence             24799999999999999999999999872       4888887764332 445556666555552     11 246788


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEeccc-----ccc------C-CCChHHHHHHHHHhcCeEEecC
Q 042445          141 KIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYS-----LLE------G-INSDMEFALKLAKEESVIVLPG  208 (246)
Q Consensus       141 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~-----~~~------~-~~~~~~~~~~ll~~~gi~v~pg  208 (246)
                      +.++.++++++.+.+.|++. |+. +..|+||+|+|++++.-     .++      + ..++.+++..++++.||.+.||
T Consensus       970 e~r~~Lk~rRd~L~e~L~~~-Gi~-v~~PeGGFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PG 1047 (1082)
T PLN02672        970 EQKKILKSRAERLKETLEAC-GWD-VLEPQGGISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSS 1047 (1082)
T ss_pred             HHHHHHHHHHHHHHHHHHHC-CCe-EecCCcEEEEEEEccccccccccccccccccccCCCHHHHHHHHHHcCCEEEecC
Confidence            88999999999999999987 666 67899999999876421     000      0 1146778788887889999999


Q ss_pred             CCcCCCCeEEEEeecChHHHHHHHHHHHHHHH
Q 042445          209 ITVGLKDWLRITFAVEPSALENGLGRMKAFYD  240 (246)
Q Consensus       209 ~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~~  240 (246)
                      .+|+.++|+|++++.+++++++++++|.++++
T Consensus      1048 s~FG~~g~~RIsfa~~~e~LeeALerL~kf~~ 1079 (1082)
T PLN02672       1048 SWTGIPGYCRFSFALEDSEFDRALKAIARFKE 1079 (1082)
T ss_pred             cccCCCCeEEEEecCCHHHHHHHHHHHHHHHH
Confidence            98888899999999999999999999998764

>PLN02397 aspartate transaminase

Probab=100.00  E-value=5.7e-34  Score=244.57  Aligned_cols=203  Identities=19%  Similarity=0.163  Sum_probs=161.7

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCC--CCccccccC-CcccEEEEcccccccccCCceE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNT--PFVSMGVFG-SIVPLLTLGSISKRGIVPGLRL   88 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~-~~~~~i~~~s~sK~~~~~g~r~   88 (246)
                      ++++||||||.++|.+++++|+++|++||++||+||+|.++.+++.  ++.++..+. ..+++|+++||||.|+++|+|+
T Consensus       199 ~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~G~Rv  278 (423)
T PLN02397        199 LHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKNMGLYGERV  278 (423)
T ss_pred             EeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHhcCCcEEEEEECcccCCCccccc
Confidence            7788999999999999999999999999999999999999998641  233333332 2347999999999999999999


Q ss_pred             EEEE--eeCCCCCcchhhHHHH----HHHHhh-hcCCCCchHHHHHHHHHhhch--HH---HHHHHHHHHHHHHHHHHHH
Q 042445           89 GWLV--TSDPNGILQDSGIVDS----IKIFLN-ISSDPATFIQGAVPQILEKTE--EE---FFSKIIDILRETADKCCDR  156 (246)
Q Consensus        89 G~i~--~~~~~~~~~~~~~~~~----l~~~~~-~~~~~~~~~q~~~~~~l~~~~--~~---~~~~~~~~~~~~~~~l~~~  156 (246)
                      ||++  +++.       ++++.    +..... .+.+++.+.|.++..+|.++.  +.   ++++.++.++++++.+.+.
T Consensus       279 G~~v~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~  351 (423)
T PLN02397        279 GALSVVCKSA-------DVAVRVKSQLKLIARPMYSNPPIHGASIVATILGDPELFSEWTKELKGMADRIISMRQKLYDA  351 (423)
T ss_pred             eEEEEEeCCH-------HHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9985  4321       44443    333322 344678889999999998642  23   3788899999999999999


Q ss_pred             hhcCC---CCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee-cChHHHHHHH
Q 042445          157 LKEIP---CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA-VEPSALENGL  232 (246)
Q Consensus       157 L~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~-~~~~~l~~~~  232 (246)
                      |++++   ++. +..|+||+|+|++++          .+++.++++++||.+.++.        |++++ .+.+.+++++
T Consensus       352 L~~~~~~~~~~-~~~p~gg~fl~~~l~----------~~~~~~Ll~~~~V~v~~~~--------Ri~~~~~~~~~i~~~~  412 (423)
T PLN02397        352 LEARGSPGDWS-HITKQIGMFSFTGLN----------KEQVDRMTKEYHIYMTRDG--------RISMAGLSSKNVPYLA  412 (423)
T ss_pred             HHhcCCCCCCC-cccCCceEEEecCCC----------HHHHHHHHHhCCEEECCCC--------eEEEeeCCHHHHHHHH
Confidence            99872   154 467999999998763          3588899999999997532        99998 6999999999


Q ss_pred             HHHHHHHH
Q 042445          233 GRMKAFYD  240 (246)
Q Consensus       233 ~~l~~~~~  240 (246)
                      ++|.++++
T Consensus       413 ~~i~~~~~  420 (423)
T PLN02397        413 DAIHAVVT  420 (423)
T ss_pred             HHHHHHHh
Confidence            99999975

>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

Probab=100.00  E-value=5.3e-34  Score=237.49  Aligned_cols=204  Identities=17%  Similarity=0.243  Sum_probs=173.2

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      +++|||||||..++.++++++++.+.+ +.++|+||+|.+|+-    ..++..+...+|++++.||||+||++|+|+||+
T Consensus       150 ~i~nPNNPTG~~~~~~~l~~l~~~~~~-~~~vVvDEAY~eF~~----~~~~~l~~~~~nlivlRTfSKa~gLAGlRlGy~  224 (356)
T COG0079         150 FLCNPNNPTGTLLPREELRALLEALPE-GGLVVIDEAYIEFSP----ESSLELLKYPPNLIVLRTFSKAFGLAGLRVGYA  224 (356)
T ss_pred             EEeCCCCCCCCCCCHHHHHHHHHhCCC-CcEEEEeCchhhcCC----chhhhhccCCCCEEEEEecHHhhhcchhceeec
Confidence            999999999999999999999999998 999999999999984    222222335567999999999999999999999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG  171 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~  171 (246)
                      +++.        ++++.+.+....| ++|.+++.++.+++.  +.+++++..+..++.++++.+.|+.++ +. .+.|+.
T Consensus       225 ia~~--------~~i~~l~~vr~p~-~v~~~a~~aa~aal~--~~~~~~~~~~~~~~~r~rl~~~l~~~~-~~-~v~pS~  291 (356)
T COG0079         225 IANP--------ELIAALNKVRPPF-NVSSPALAAAIAALR--DADYLEESVERIREERERLYAALKALG-LF-GVFPSQ  291 (356)
T ss_pred             cCCH--------HHHHHHHHhcCCC-CCCHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHHHHHHHHhCC-CC-eecCCC
Confidence            9998        9999999998887 899999999999999  458999999999999999999999986 54 257888


Q ss_pred             ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcC-CCCeEEEEeecChHHHHHHHHHHHHHHHH
Q 042445          172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG-LKDWLRITFAVEPSALENGLGRMKAFYDR  241 (246)
Q Consensus       172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~-~~~~iRls~~~~~~~l~~~~~~l~~~~~~  241 (246)
                      ++|++++++..      . ...+.+.|.++||.++.....+ .++++|++++..+++ ++.++.|.++++.
T Consensus       292 aNFvlv~~~~~------~-~~~l~~~L~~~giivR~~~~~~~~~~~lRitvgt~een-~~ll~AL~~~~~~  354 (356)
T COG0079         292 ANFVLVRVPDA------E-AAALAEALLKKGILVRDCSSVGLLPGYLRITVGTPEEN-DRLLAALREVLKG  354 (356)
T ss_pred             CcEEEEECCCc------c-HHHHHHHHHHCCEEEEeCCCCCCCCCeEEEEeCCHHHH-HHHHHHHHHHHhc
Confidence            99999988741      2 4456777888999999986533 378999999965555 8888888877653

>PRK14809 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=5.1e-34  Score=240.43  Aligned_cols=198  Identities=20%  Similarity=0.249  Sum_probs=165.5

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      +++|||||||.++|.+++++|+++|++ +++||+||+|.++.+++.   ....+...+++++++||||.|++||+|+||+
T Consensus       159 ~l~~p~NPTG~~~s~~~~~~l~~~~~~-~~~iI~De~y~~~~~~~~---~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~  234 (357)
T PRK14809        159 YLTSPHNPTGSEIPLDEVEALAERTDE-ETLVVVDEAYGEFAERPS---AVALVEERDDVAVLRTFSKAYGLAGLRLGYA  234 (357)
T ss_pred             EEeCCCCCCCcCCCHHHHHHHHHhCcc-CcEEEEechhhhccCCch---hHHHHhhCCCEEEEecchhHhcCcchhheee
Confidence            888999999999999999999999875 789999999999886432   2223344568999999999999999999999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG  171 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~  171 (246)
                      ++++        ++++.+......+ ++|++.|.++..++.  .+.++++.++.++++++.+.+.|+..      ..|.+
T Consensus       235 ~~~~--------~~~~~~~~~~~~~-~~~~~~~~~a~~~l~--~~~~~~~~~~~~~~~r~~l~~~L~~~------~~~~~  297 (357)
T PRK14809        235 VVPE--------EWADAYARVNTPF-AASELACRAGLAALD--DDEHVERTVETARWAREYIREELDAP------TWESA  297 (357)
T ss_pred             ecCH--------HHHHHHHHhCCCC-CCCHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHhcCc------cCCCC
Confidence            9998        8999888765433 789999999999997  36788899999999999999988653      13578


Q ss_pred             ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHHHH
Q 042445          172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYD  240 (246)
Q Consensus       172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~~  240 (246)
                      |+|+|++++        ++.++. +.+.++||.+.||..|+.++++|++++ +++++++++++|.++++
T Consensus       298 g~f~~~~~~--------~~~~~~-~~l~~~gv~v~~g~~f~~~~~iRls~~-~~~~~~~~l~~L~~~l~  356 (357)
T PRK14809        298 GNFVLAEVG--------DASAVA-EAAQERGVIVRDCTSFGLPECIRITCG-TREETERAVEVLNEVLA  356 (357)
T ss_pred             CCEEEEECC--------CHHHHH-HHHHHCCEEEEECccCCCCCeEEEecC-CHHHHHHHHHHHHHHhc
Confidence            999998774        245555 457789999999999987899999987 56889999999998875

>PRK06836 aspartate aminotransferase; Provisional

Probab=100.00  E-value=2.1e-33  Score=239.56  Aligned_cols=217  Identities=19%  Similarity=0.330  Sum_probs=171.4

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHH------cCCEEEEccccCCcccCCCCCccccccCCcccE
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKK------LGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPL   71 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~------~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~   71 (246)
                      +.+++.++++    ++++||||||.++|.+++++|+++|++      ||++||+||+|.++.+++....++.  ...+++
T Consensus       159 ~~l~~~~~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~--~~~~~~  236 (394)
T PRK06836        159 DALEAAITPKTKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIF--KYYDNS  236 (394)
T ss_pred             HHHHhhcCcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCCChH--HccCcE
Confidence            3444444433    778999999999999999999999999      8999999999999988754333322  224589


Q ss_pred             EEEcccccccccCCceEEEEEeeCCCCCcchhhHHH------HHHHHhhh--cCCCCchHHHHHHHHHhhchHHHHHHHH
Q 042445           72 LTLGSISKRGIVPGLRLGWLVTSDPNGILQDSGIVD------SIKIFLNI--SSDPATFIQGAVPQILEKTEEEFFSKII  143 (246)
Q Consensus        72 i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~------~l~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~  143 (246)
                      ++++||||.|++||+|+||+++++        ++.+      .+......  ..+++++.|.++..++.+.      ..+
T Consensus       237 i~~~S~SK~~~~pGlRiG~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~------~~~  302 (394)
T PRK06836        237 IVVYSFSKSLSLPGERIGYIAVNP--------EMEDADDLVAALVFANRILGFVNAPALMQRVVAKCLDAT------VDV  302 (394)
T ss_pred             EEEecchhhccCcceeeEEEecCH--------HHhhhHHHHHHHHHHhhccccccCCHHHHHHHHHHhCCh------HHH
Confidence            999999999999999999999987        4432      22111111  1267888999999999852      125


Q ss_pred             HHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec
Q 042445          144 DILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV  223 (246)
Q Consensus       144 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~  223 (246)
                      +.++++++.+.+.|+++ |+. +..|++|+|+|++++..      ++.+++ +.+.++||.+.||..|+.++++||+++.
T Consensus       303 ~~~~~~r~~l~~~L~~~-g~~-~~~~~gg~~~~~~~~~~------~~~~~~-~~l~~~gv~v~~g~~f~~~~~iRi~~~~  373 (394)
T PRK06836        303 SIYKRNRDLLYDGLTEL-GFE-CVKPQGAFYLFPKSPEE------DDVAFC-EKAKKHNLLLVPGSGFGCPGYFRLSYCV  373 (394)
T ss_pred             HHHHHHHHHHHHHHHhC-CCE-eecCCceEEEEEeCCCC------CHHHHH-HHHHhCCEEEECchhcCCCCeEEEEecC
Confidence            66888999999999887 665 57889999999987642      355554 6678899999999999878999999998


Q ss_pred             ChHHHHHHHHHHHHHHHHHh
Q 042445          224 EPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       224 ~~~~l~~~~~~l~~~~~~~~  243 (246)
                      +++++++++++|.+++++++
T Consensus       374 ~~~~~~~~i~~l~~~l~~~~  393 (394)
T PRK06836        374 DTETIERSLPAFEKLAKEYK  393 (394)
T ss_pred             CHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999998764

>PRK06225 aspartate aminotransferase; Provisional

Probab=100.00  E-value=3.4e-33  Score=237.30  Aligned_cols=215  Identities=15%  Similarity=0.198  Sum_probs=173.4

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      ++++||||||.++|.+++++|+++|+++|+++|+||+|.++..+.   .+...+. .++++++.||||.||++|+|+||+
T Consensus       162 ~l~~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~---~~~~~~~-~~~~i~~~s~SK~~g~~G~RiG~i  237 (380)
T PRK06225        162 YLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAREH---TLAAEYA-PEHTVTSYSFSKIFGMAGLRIGAV  237 (380)
T ss_pred             EEeCCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhccC---CchhhcC-CCCEEEEeechhhcCCccceeEEE
Confidence            678999999999999999999999999999999999998876432   1222222 357899999999999999999999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG  171 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~  171 (246)
                      ++++        ++++.+........+.|.+.|.++..++.. .+.+.++.++.++++++.+.+.|++++++.....|.+
T Consensus       238 ~~~~--------~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~  308 (380)
T PRK06225        238 VATP--------DLIEVVKSIVINDLGTNVIAQEAAIAGLKV-KDEWIDRIRRTTFKNQKLIKEAVDEIEGVFLPVYPSH  308 (380)
T ss_pred             ecCH--------HHHHHHHHHHhcccCCCHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHhCcCCccccCCCC
Confidence            9988        888888776433447789999999888874 3577888888888999999999998766543345678


Q ss_pred             ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC---CCeEEEEeecChHHHHHHHHHHHHHHHHHhh
Q 042445          172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFAVEPSALENGLGRMKAFYDRHAE  244 (246)
Q Consensus       172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~iRls~~~~~~~l~~~~~~l~~~~~~~~~  244 (246)
                      |+|+|++++....    +..++ ...|.++||.+.||..|+.   .+++|++++.+++++++++++|.++++++++
T Consensus       309 g~~~~~~~~~~~~----~~~~l-~~~l~~~gi~v~~g~~~~~~~~~~~iR~s~~~~~e~l~~~~~~l~~~~~~~~~  379 (380)
T PRK06225        309 GNMMVIDISEAGI----DPEDL-VEYLLERKIFVRQGTYTSKRFGDRYIRVSFSIPREQVEVFCEEFPDVVETLRT  379 (380)
T ss_pred             CeEEEEEcccccC----CHHHH-HHHHHHCCEEEcCCcccCcCCCCceEEEEeCCCHHHHHHHHHHHHHHHHHhhc
Confidence            8999998864321    34555 4445689999999987653   5799999998899999999999999987765

>PTZ00376 aspartate aminotransferase; Provisional

Probab=100.00  E-value=7.6e-34  Score=242.87  Aligned_cols=202  Identities=17%  Similarity=0.171  Sum_probs=160.6

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCC--CCccccccC-CcccEEEEcccccccccCCceE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNT--PFVSMGVFG-SIVPLLTLGSISKRGIVPGLRL   88 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~-~~~~~i~~~s~sK~~~~~g~r~   88 (246)
                      +++|||||||.++|.+++++|+++|++||++||+||+|.++.+++.  .+.++..+. ..+++|+++||||.|+++|+|+
T Consensus       181 ~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRv  260 (404)
T PTZ00376        181 LHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNMGLYGERI  260 (404)
T ss_pred             EeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCccccccccc
Confidence            6799999999999999999999999999999999999999998641  222333332 2358999999999999999999


Q ss_pred             EEEE---eeCCCCCcchhhHHHHH----HHH-hhhcCCCCchHHHHHHHHHhhch--H---HHHHHHHHHHHHHHHHHHH
Q 042445           89 GWLV---TSDPNGILQDSGIVDSI----KIF-LNISSDPATFIQGAVPQILEKTE--E---EFFSKIIDILRETADKCCD  155 (246)
Q Consensus        89 G~i~---~~~~~~~~~~~~~~~~l----~~~-~~~~~~~~~~~q~~~~~~l~~~~--~---~~~~~~~~~~~~~~~~l~~  155 (246)
                      ||++   +++        ++++.+    ... ...+.+.+.+.|.++..++.++.  +   .++++.++.++++++.+.+
T Consensus       261 G~~~~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~  332 (404)
T PTZ00376        261 GALHIVCANK--------EEAANVLSQLKLIIRPMYSSPPIHGARIADRILSDPELRAEWLSELKEMSGRIQNMRQLLYD  332 (404)
T ss_pred             ceEEEEeCCH--------HHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9984   454        544443    333 23344568899999999998643  2   3466777899999999999


Q ss_pred             HhhcCC---CCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee-cChHHHHHH
Q 042445          156 RLKEIP---CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA-VEPSALENG  231 (246)
Q Consensus       156 ~L~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~-~~~~~l~~~  231 (246)
                      .|++++   ++. +..|+||+|+|+++          +.+++..+++++||.+.||.        |+|++ .+.++++++
T Consensus       333 ~L~~~~~~~~~~-~~~p~gg~f~~~~~----------~~~~~~~L~~~~~v~v~p~~--------Ris~~~~~~~~~~~~  393 (404)
T PTZ00376        333 ELKALGSPGDWE-HIINQIGMFSFTGL----------TKEQVERLIEKYHIYLLDNG--------RISVAGLTSKNVDYV  393 (404)
T ss_pred             HHHhcCCCCccc-ccccCceEEEecCC----------CHHHHHHHHHhCCEeecCCC--------eEEEeccCHHhHHHH
Confidence            999862   233 45789999999866          34677888888899999972        99998 699999999


Q ss_pred             HHHHHHHHH
Q 042445          232 LGRMKAFYD  240 (246)
Q Consensus       232 ~~~l~~~~~  240 (246)
                      +++|.+++.
T Consensus       394 ~~~l~~~~~  402 (404)
T PTZ00376        394 AEAIHDVVR  402 (404)
T ss_pred             HHHHHHHHh
Confidence            999999875

>PRK02610 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=1.5e-33  Score=238.80  Aligned_cols=201  Identities=19%  Similarity=0.248  Sum_probs=159.8

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      +++|||||||.++|.+++++++++|  +|++||+||+|.++.+..    .+..+...+++|+++||||.||+||+|+||+
T Consensus       173 ~l~~P~NPTG~~~s~~~l~~l~~~~--~~~~iI~De~Y~~~~~~~----~~~~~~~~~~~ivi~SfSK~~g~~GlRiG~~  246 (374)
T PRK02610        173 FVVHPNSPTGNPLTAAELEWLRSLP--EDILVVIDEAYFEFSQTT----LVGELAQHPNWVILRTFSKAFRLAAHRVGYA  246 (374)
T ss_pred             EEeCCCCCCCCCCCHHHHHHHHhcc--CCcEEEEeccccccCccc----hHHHHhcCCCEEEEEecchhccCcccceeee
Confidence            7889999999999999999999876  499999999999886421    2223334457899999999999999999999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG  171 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~  171 (246)
                      ++++        ++++.+......+ ++|.+.|.++..++.+ .+.+.+..++.+++ ++.+.+.|++++++..  .|++
T Consensus       247 v~~~--------~l~~~l~~~~~~~-~~~~~~q~a~~~~l~~-~~~~~~~~~~~~~~-r~~l~~~L~~~~~~~~--~p~~  313 (374)
T PRK02610        247 IGHP--------ELIAVLEKVRLPY-NLPSFSQLAAQLALEH-RQELLAAIPEILQE-RDRLYQALQELPQLRV--WPSA  313 (374)
T ss_pred             ecCH--------HHHHHHHHhcCCC-CCCHHHHHHHHHHhcC-HHHHHHHHHHHHHH-HHHHHHHHHhCCCcEe--CCCc
Confidence            9988        8999888775433 7899999999999974 35667766666554 6778889988877652  5899


Q ss_pred             ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHHHHHHh
Q 042445          172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~~~~~  243 (246)
                      |+|+|++++...     ++.++ .+.+.++||.+.++     ++++||+++.+ +++++++++|.+++++++
T Consensus       314 g~f~~~~l~~~~-----~~~~~-~~~l~~~gi~v~~~-----~~~lRls~~~~-~~~~~~l~~l~~~l~~~~  373 (374)
T PRK02610        314 ANFLYLRLSQDA-----ALAAL-HQALKAQGTLVRHT-----GGGLRITIGTP-EENQRTLERLQAALTQLE  373 (374)
T ss_pred             ceEEEEeCCCCC-----CHHHH-HHHHHHCCEEEEeC-----CCeEEEeCCCH-HHHHHHHHHHHHHHhhcC
Confidence            999999887532     24444 55578899999863     57899999864 567999999999987653

>PRK01533 histidinol-phosphate aminotransferase; Validated

Probab=100.00  E-value=4.3e-34  Score=241.08  Aligned_cols=212  Identities=14%  Similarity=0.192  Sum_probs=167.6

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      |.+++.++++    +++|||||||.+++.+++++|+++|++++ ++|+||+|.++.+.+.....+..+...+++|+++||
T Consensus       142 ~~l~~~~~~~~~~v~i~~P~NPTG~~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~~vi~~~Sf  220 (366)
T PRK01533        142 DEISSVVDNDTKIVWICNPNNPTGTYVNDRKLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHKNILVLRTF  220 (366)
T ss_pred             HHHHHHhCcCCcEEEEeCCCCCCCCCcCHHHHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhccCCCEEEEeCc
Confidence            3455555433    88899999999999999999999998866 577799999888654322333444556789999999


Q ss_pred             ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRL  157 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L  157 (246)
                      ||.|++||+|+||+++++        ++++.+......+ ++|.++|.++..+|.  ...+.++.++..+++++.+.+.+
T Consensus       221 SK~~~l~GlRiG~~i~~~--------~~~~~l~~~~~~~-~~~~~~q~aa~~~l~--~~~~~~~~~~~~~~~r~~~~~~l  289 (366)
T PRK01533        221 SKAYGLASFRVGYAVGHE--------ELIEKLNVVRLPF-NVSSLAQKAATIAFG--DDEFIEEIVRVNTEGLRQYESFC  289 (366)
T ss_pred             hHHhcChHHHHhHHhCCH--------HHHHHHHHhcCCC-CcCHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988        9999998775444 899999999999997  46788888888899999999988


Q ss_pred             hcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHH
Q 042445          158 KEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKA  237 (246)
Q Consensus       158 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~  237 (246)
                      +.+ |+. + .+.+|+|+|++++.        +.+ +.+.|.++||.|++   |  ++++|++++ +.++.+..++.|++
T Consensus       290 ~~~-g~~-~-~~~~~nf~~~~~~~--------~~~-~~~~l~~~GI~Vr~---~--~~~iRis~~-~~~~~~~l~~al~~  351 (366)
T PRK01533        290 KEN-EIP-F-YQSQTNFIFLPVEN--------GGE-IYEACAHAGFIIRP---F--PNGVRITVG-TREQNEGVISVLQQ  351 (366)
T ss_pred             HhC-CCc-c-CCCcCcEEEEeCCC--------HHH-HHHHHHHCCcEEcc---C--CCceEEeCC-CHHHHHHHHHHHHH
Confidence            887 665 3 34568899988752        334 45667789999998   3  689999998 45567788888887


Q ss_pred             HHHHHh
Q 042445          238 FYDRHA  243 (246)
Q Consensus       238 ~~~~~~  243 (246)
                      .++..+
T Consensus       352 ~~~~~~  357 (366)
T PRK01533        352 HFENKK  357 (366)
T ss_pred             HHHhcc
Confidence            776544

>PRK09257 aromatic amino acid aminotransferase; Provisional

Probab=100.00  E-value=1.5e-33  Score=240.65  Aligned_cols=205  Identities=20%  Similarity=0.201  Sum_probs=161.1

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccC-CCCCccccccCC-cccEEEEcccccccccCCceEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFG-NTPFVSMGVFGS-IVPLLTLGSISKRGIVPGLRLG   89 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~-~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~g~r~G   89 (246)
                      +.++||||||.++|.+++++|+++|++||++||+||+|.++.++ +..+.++..+.. .+++|+++||||.|+++|+|+|
T Consensus       177 i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRiG  256 (396)
T PRK09257        177 LHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELLVASSFSKNFGLYGERVG  256 (396)
T ss_pred             EeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhcCCcEEEEEEcCCcCccccccce
Confidence            66999999999999999999999999999999999999999875 222334444432 4589999999999999999999


Q ss_pred             EEEe--eCCCCCcchhhHHHHHHHHh-hhcCCCCchHHHHHHHHHhhch-----HHHHHHHHHHHHHHHHHHHHHhhcCC
Q 042445           90 WLVT--SDPNGILQDSGIVDSIKIFL-NISSDPATFIQGAVPQILEKTE-----EEFFSKIIDILRETADKCCDRLKEIP  161 (246)
Q Consensus        90 ~i~~--~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~~  161 (246)
                      |+++  ++. ....  +++..+.... ..+.+++.+.|.++..++.++.     ++++++.++.++++++.+.+.|++..
T Consensus       257 ~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~rr~~l~~~L~~~~  333 (396)
T PRK09257        257 ALSVVAEDA-EEAD--RVLSQLKATIRTNYSNPPAHGAAIVATILNDPELRAEWEAELEEMRERIKAMRQLLVEALKAKG  333 (396)
T ss_pred             eEEEEeCCH-HHHH--HHHHHHHHHhhhhcCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9984  321 0000  2333443332 2344678999999999998653     57788899999999999999999852


Q ss_pred             ---CCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee-cChHHHHHHHHHHHH
Q 042445          162 ---CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA-VEPSALENGLGRMKA  237 (246)
Q Consensus       162 ---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~-~~~~~l~~~~~~l~~  237 (246)
                         ++. +..|+||+|+|++++          .+++.++++++||.+.|.      +  ||+++ .+++.+++++++|.+
T Consensus       334 ~~~~~~-~~~p~gg~~~w~~l~----------~~~~~~l~~~~~V~~~p~------~--ri~~~~~~~~~i~~~~~~i~~  394 (396)
T PRK09257        334 PSRDFD-FIARQRGMFSYSGLT----------PEQVDRLREEFGVYAVGS------G--RINVAGLNESNIDYVAEAIAA  394 (396)
T ss_pred             CCCCcc-cccccceEEEecCCC----------HHHHHHHHHcCCEEEcCC------C--eEEEeeCCHHHHHHHHHHHHh
Confidence               344 578999999998763          356688889999999883      2  99998 599999999999987


Q ss_pred             H
Q 042445          238 F  238 (246)
Q Consensus       238 ~  238 (246)
                      +
T Consensus       395 ~  395 (396)
T PRK09257        395 V  395 (396)
T ss_pred             h
Confidence            5

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=5.6e-33  Score=235.59  Aligned_cols=208  Identities=19%  Similarity=0.239  Sum_probs=162.4

Q ss_pred             hhhhhhh-ccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcc
Q 042445            2 ELINQDI-TRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGS   76 (246)
Q Consensus         2 e~~~~~~-~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s   76 (246)
                      |.+++.+ .++    +++|||||||.+++.+++++|++.+    +++|+||+|.++.+.+.   ....+...+++++++|
T Consensus       165 ~~l~~~~~~~~~~~v~l~~P~NPTG~~~~~~~l~~l~~~~----~~vi~DeaY~~~~~~~~---~~~~~~~~~~viv~~S  237 (380)
T PLN03026        165 PRIVEAVETHKPKLLFLTSPNNPDGSIISDDDLLKILELP----ILVVLDEAYIEFSTQES---RMKWVKKYDNLIVLRT  237 (380)
T ss_pred             HHHHHHHhccCCcEEEEeCCCCCCCCCCCHHHHHHHHhcC----CEEEEECcchhhcCCcc---hHHHHHhCCCEEEEec
Confidence            3455555 332    8899999999999999888888653    89999999999876532   1222344578999999


Q ss_pred             cccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 042445           77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDR  156 (246)
Q Consensus        77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  156 (246)
                      |||.||++|+|+||+++++        ++++.+......+ +++.++|.++.++|.+  ..++++.++.++++++.+.+.
T Consensus       238 fSK~~glaGlRiGy~~~~~--------~~i~~l~~~~~~~-~~~~~~q~aa~~aL~~--~~~~~~~~~~~~~~r~~l~~~  306 (380)
T PLN03026        238 FSKRAGLAGLRVGYGAFPL--------SIIEYLWRAKQPY-NVSVAAEVAACAALSN--PKYLEDVKNALVEERERLFGL  306 (380)
T ss_pred             chHhhcCccccceeeecCH--------HHHHHHHHhcCCC-CCCHHHHHHHHHHhhC--HHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998        9999988776554 7899999999999973  578899999999999999999


Q ss_pred             hhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHH
Q 042445          157 LKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMK  236 (246)
Q Consensus       157 L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~  236 (246)
                      |++++++.  ..|++|+|+|++++...     ++.++ .+.|.++||.++++..++.++++|+|++. .++.+..++.|+
T Consensus       307 L~~~~~~~--~~p~~~~f~~~~~~~~~-----~~~~~-~~~l~~~gI~v~~~~~~~~~~~lRis~~~-~~~~~~l~~al~  377 (380)
T PLN03026        307 LKEVPFLE--PYPSDANFILCRVTSGR-----DAKKL-KEDLAKMGVMVRHYNSKELKGYIRVSVGK-PEHTDALMEALK  377 (380)
T ss_pred             HHHCCCCe--ECCCCCeEEEEECCCCC-----CHHHH-HHHHHHCCeEEEECCCCCCCCEEEEecCC-HHHHHHHHHHHH
Confidence            99885544  37889999999876421     24555 44555899999998765567899999994 334444444443

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=1e-33  Score=237.83  Aligned_cols=200  Identities=16%  Similarity=0.222  Sum_probs=161.0

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      +++|||||||.+++.+++++|++.|++ +.++|+||+|.+|....   .....+...++++++.||||.||++|+|+||+
T Consensus       150 ~l~nPnNPTG~~~~~~~l~~l~~~~~~-~~~vivDEay~~f~~~~---s~~~~~~~~~n~iv~rSfSK~~glaGlRiGy~  225 (351)
T PRK01688        150 YVCSPNNPTGNLINPQDLRTLLELTRG-KAIVVADEAYIEFCPQA---SLAGWLAEYPHLVILRTLSKAFALAGLRCGFT  225 (351)
T ss_pred             EEeCCCCCCCCCCCHHHHHHHHHhCCC-CcEEEEECchhhcCCCC---ChHHHHhhCCCEEEEecchHhhcCHHHHHhHH
Confidence            889999999999999999999999986 68999999999987331   12222344568999999999999999999999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG  171 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~  171 (246)
                      ++++        ++++.+......+ ++|.+.|.++..+|.+....++++.++.++++++.+.+.|++++++. .+.|++
T Consensus       226 i~~~--------~~i~~l~~~~~~~-~v~~~~~~~a~~~L~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~-~~~ps~  295 (351)
T PRK01688        226 LANE--------EVINLLLKVIAPY-PLSTPVADIAAQALSPQGIAAMRERVAEINANRQWLIAALKEIPCVE-QVFDSE  295 (351)
T ss_pred             hCCH--------HHHHHHHhccCCC-CCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-eECCCC
Confidence            9988        8999888776555 78888888888888754456788888899999999999999887764 246788


Q ss_pred             ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCc-CCCCeEEEEeecChHHHHHHHHHH
Q 042445          172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITV-GLKDWLRITFAVEPSALENGLGRM  235 (246)
Q Consensus       172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f-~~~~~iRls~~~~~~~l~~~~~~l  235 (246)
                      ++|+|++++.        +.++ .+.|.++||.|+++..+ +.++++|+|++ ++++.+..++.|
T Consensus       296 ~nfi~~~~~~--------~~~l-~~~L~~~gi~vr~~~~~~~~~~~iRis~~-~~~e~~~l~~al  350 (351)
T PRK01688        296 TNYILARFTA--------SSAV-FKSLWDQGIILRDQNKQPGLSNCLRITIG-TREECQRVIDAL  350 (351)
T ss_pred             CcEEEEEcCC--------HHHH-HHHHHHCCeEEEECCCcCCCCCeEEEeCC-CHHHHHHHHHhh
Confidence            9999988752        4444 44566889999987655 44889999999 456667776655

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=3.9e-33  Score=236.09  Aligned_cols=211  Identities=18%  Similarity=0.263  Sum_probs=161.9

Q ss_pred             hhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccC-CcccEEEEccc
Q 042445            3 LINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFG-SIVPLLTLGSI   77 (246)
Q Consensus         3 ~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~~~i~~~s~   77 (246)
                      .+++.++++    +++|||||||.+++.+++++|+++|++ +.++|+||+|.++.+++.....+..+. ..+++|+++||
T Consensus       151 ~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~i~Sf  229 (371)
T PRK05166        151 ALCAAVARAPRMLMFSNPSNPVGSWLTADQLARVLDATPP-ETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLRTF  229 (371)
T ss_pred             HHHHhhhcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCC-CcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEEEEeec
Confidence            444444433    789999999999999999999999874 889999999999996543222222232 24579999999


Q ss_pred             ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRL  157 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L  157 (246)
                      ||.|+++|+|+||+++++.       ++++.+......+ ++|.+.|.++..++..  ..++++.++.++++++.+.+.|
T Consensus       230 SK~~~l~GlRiG~~i~~~~-------~l~~~~~~~~~~~-~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~l~~~L  299 (371)
T PRK05166        230 SKAYGLAGLRVGYGLVSDP-------ELVGLLDRVRTPF-NVNGAAQAAALAALDD--EEHLAKGVALALAERERLKKEL  299 (371)
T ss_pred             hHhhhcchhheeeeecCCH-------HHHHHHHHhccCC-CCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999887542       7778777655433 7899999888888873  5688888899999999999999


Q ss_pred             hcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecC--hHHHHHHHHHH
Q 042445          158 KEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVE--PSALENGLGRM  235 (246)
Q Consensus       158 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~--~~~l~~~~~~l  235 (246)
                      ++. ++. + .|.+|+|+|++++.       ++.++.. .+.++||.+.||..++.++++|++++.+  .+.+.++++.+
T Consensus       300 ~~~-g~~-~-~p~~g~fl~~~~~~-------~~~~l~~-~l~~~gi~v~p~~~~~~~~~iRi~~~~~~~~~~l~~~l~~i  368 (371)
T PRK05166        300 AEM-GYR-I-APSRANFLFFDARR-------PASAVAE-ALLRQGVIVKPWKQPGFETFIRVSIGSPEENDHFVAALDKV  368 (371)
T ss_pred             HHC-cCe-e-CCCcCCEEEEeCCC-------CHHHHHH-HHHHCCeEEecCCCCCCCCeEEEEcCCHHHHHHHHHHHHHH
Confidence            987 665 3 56778999987653       2555554 5557899999998776689999999962  35555555544

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=100.00  E-value=1.5e-32  Score=232.40  Aligned_cols=217  Identities=18%  Similarity=0.216  Sum_probs=173.0

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.+.++    +++|||||||.+++.+++.++++.|+ +|+++|+||+|.++.+++....++..++..+++++++||
T Consensus       145 ~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~  223 (367)
T PRK02731        145 DAMLAAVTPRTRLVFIANPNNPTGTYLPAEEVERFLAGVP-PDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTRTF  223 (367)
T ss_pred             HHHHHHhCCCCcEEEEeCCCCCCCcCCCHHHHHHHHHhCC-CCcEEEEECcHHHhccCcCcccHHHHHhhcCCEEEEeee
Confidence            3445555433    77899999999999999999998875 699999999999988765333344434445689999999


Q ss_pred             ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRL  157 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L  157 (246)
                      ||.||++|+|+||+++++        ++++.+......+ +.|.++|.++..+++  ...++++.++.++++++.+.+.|
T Consensus       224 SK~~g~~G~RiG~l~~~~--------~~~~~l~~~~~~~-~~~~~~~~~a~~~l~--~~~~~~~~~~~~~~~~~~l~~~L  292 (367)
T PRK02731        224 SKAYGLAGLRVGYGIAPP--------EIIDALNRVRQPF-NVNSLALAAAVAALD--DDAFVEKSRALNAEGMAWLTEFL  292 (367)
T ss_pred             hHhhcCcccceeeeeCCH--------HHHHHHHHccCCC-CCCHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998        8999888765443 678999999999997  35678888999999999999999


Q ss_pred             hcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHH
Q 042445          158 KEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKA  237 (246)
Q Consensus       158 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~  237 (246)
                      ++. |+..  .|.+|+|+|++++...     ++.++ .+.|.++||.+.|+..|+.++++|++++ +.++++..++.|++
T Consensus       293 ~~~-g~~~--~~~~g~~~~i~~~~~~-----~~~~~-~~~L~~~gI~v~~~~~~~~~~~iRis~~-~~~e~~~l~~aL~~  362 (367)
T PRK02731        293 AEL-GLEY--IPSVGNFILVDFDDGK-----DAAEA-YQALLKRGVIVRPVAGYGLPNALRITIG-TEEENRRFLAALKE  362 (367)
T ss_pred             HHC-CCcc--CCCCceEEEEECCCCC-----CHHHH-HHHHHHCCEEEEeCCCCCCCCeEEEecC-CHHHHHHHHHHHHH
Confidence            987 6663  3567899999885432     34455 4556689999999988866789999998 55667888888887


Q ss_pred             HHH
Q 042445          238 FYD  240 (246)
Q Consensus       238 ~~~  240 (246)
                      +++
T Consensus       363 ~~~  365 (367)
T PRK02731        363 FLA  365 (367)
T ss_pred             HHh
Confidence            764

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=3e-32  Score=230.47  Aligned_cols=207  Identities=14%  Similarity=0.177  Sum_probs=167.3

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      +++|||||||.++|.+++.+|+++|+ +|++||+||+|.++.+++. ..++..  ..+++++++||||.|++||+|+||+
T Consensus       160 ~l~~P~NPtG~~~~~~~l~~l~~~~~-~~~~lI~DE~y~~~~~~~~-~~~~~~--~~~~~i~~~SfSK~~g~~GlRiG~~  235 (369)
T PRK08153        160 YLANPDNPMGSWHPAADIVAFIEALP-ETTLLVLDEAYCETAPAGA-APPIDT--DDPNVIRMRTFSKAYGLAGARVGYA  235 (369)
T ss_pred             EEeCCCCCCCCCCCHHHHHHHHHhCC-CCcEEEEeCchhhhcCccc-chhhhh--cCCCEEEEecchHhccCcchheeee
Confidence            77899999999999999999999887 4999999999999887653 223222  2458999999999999999999999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG  171 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~  171 (246)
                      ++++        ++++.+......+ ++|++.|.++..+|.  +..++++.++.++++++.+.+.|++. |+..  .|.+
T Consensus       236 v~~~--------~~~~~l~~~~~~~-~~s~~~q~~~~~~l~--~~~~~~~~~~~~~~~r~~~~~~L~~~-g~~~--~p~~  301 (369)
T PRK08153        236 IGAP--------GTIKAFDKVRNHF-GMNRIAQAAALAALK--DQAYLAEVVGKIAAARDRIAAIARAN-GLTP--LPSA  301 (369)
T ss_pred             ecCH--------HHHHHHHHhhcCC-CCCHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHHHHHC-CCcc--CCCc
Confidence            9988        8999888765544 789999999999997  46788899999999999999999887 5642  5788


Q ss_pred             ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEe-cCCCcCCCCeEEEEeecChHHHHHHHHHHHHHHHHHh
Q 042445          172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVL-PGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~-pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~~~~~  243 (246)
                      ++|+|++++...     .....+.+.+.++||.++ |+.. ..++++|++++ ++++++..++.|.+++...+
T Consensus       302 ~~f~~~~~~~~~-----~~a~~l~~~l~~~Gi~v~~p~~~-~~~~~iRis~~-~~~~~~~~~~al~~~~~~~~  367 (369)
T PRK08153        302 TNFVAIDCGRDG-----AFARAVLDGLIARDIFVRMPGVA-PLDRCIRVSCG-PDEELDLFAEALPEALEAAR  367 (369)
T ss_pred             CcEEEEECCCCc-----ccHHHHHHHHHHCCeEEeeCCCC-CCCCeEEEecC-CHHHHHHHHHHHHHHHHHhh
Confidence            999998875321     133444555668899995 6542 23679999999 67788999999998886544

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=100.00  E-value=1.7e-32  Score=228.73  Aligned_cols=207  Identities=12%  Similarity=0.104  Sum_probs=165.2

Q ss_pred             hhhhhhhccc---cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccc-cCCcccEEEEccc
Q 042445            2 ELINQDITRE---FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGV-FGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~---~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~-~~~~~~~i~~~s~   77 (246)
                      |.+++.+...   ++++||||||.+++.+++++|+++|+++|+++|+||+|.++....    ++.. .+..+++++++||
T Consensus       117 ~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~----~~~~~~~~~~~~i~~~S~  192 (330)
T TIGR01140       117 DRLPAALEELDVLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPDA----SLAPQAARFPGLVVLRSL  192 (330)
T ss_pred             HHHHhhcccCCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCcc----chhhHhccCCCEEEEEec
Confidence            4455555332   789999999999999999999999999999999999999887542    2222 2335689999999


Q ss_pred             ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRL  157 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L  157 (246)
                      ||.||++|+|+||+++++        ++++.+......+ ++|+++|.++..++.  ...+.++.++.++++++.+.+.|
T Consensus       193 SK~~g~~G~R~G~i~~~~--------~~~~~l~~~~~~~-~~s~~~q~~~~~~l~--~~~~~~~~~~~~~~~~~~l~~~L  261 (330)
T TIGR01140       193 TKFFGLAGLRLGFVVAHP--------ALLARLREALGPW-TVNGPARAAGRAALA--DTAWQAATRARLAAERARLAALL  261 (330)
T ss_pred             chhhcCchhhhhheeCCH--------HHHHHHHhcCCCC-CchHHHHHHHHHHHh--chHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998        8889888775444 678999999999998  34567788899999999999999


Q ss_pred             hcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHH
Q 042445          158 KEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRM  235 (246)
Q Consensus       158 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l  235 (246)
                      ++++.+..  .|.+|+|+|++++.        ..++.. .|.++||.+.||..|+.  ++++|++++...++ +.++.+|
T Consensus       262 ~~~~~~~~--~~~~~~f~~~~~~~--------~~~l~~-~l~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~-~~~~~~l  329 (330)
T TIGR01140       262 ARLGGLEV--VGGTALFLLVRTPD--------AAALHE-ALARRGILIRDFDNFPGLDPRYLRFALPTDEEN-DRLEEAL  329 (330)
T ss_pred             HhCCCceE--CCCCCeEEEEEcCC--------HHHHHH-HHHHCCEEEEECCCCCCCCCCEEEEEecCHHHH-HHHHHhh
Confidence            99865542  56689999987752        455554 55578999999999863  68999999975444 5555443

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>PRK07908 hypothetical protein; Provisional

Probab=100.00  E-value=1.3e-31  Score=225.10  Aligned_cols=200  Identities=15%  Similarity=0.130  Sum_probs=158.8

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      +++|||||||.++|.+++.   ++|+ ++.++|+||+|.++..+  ...++... ..+++++++||||.|+++|+|+||+
T Consensus       144 ~l~np~NPTG~~~~~~~l~---~l~~-~~~~iIvDe~y~~~~~~--~~~~l~~~-~~~~~i~i~S~SK~~~l~GlRiG~~  216 (349)
T PRK07908        144 VIGNPTNPTSVLHPAEQLL---ALRR-PGRILVVDEAFADAVPG--EPESLAGD-DLPGVLVLRSLTKTWSLAGLRVGYA  216 (349)
T ss_pred             EEcCCCCCCCCCcCHHHHH---HHHh-cCCEEEEECcchhhccC--Cccccccc-cCCCEEEEeecccccCCccceeeee
Confidence            7899999999999977554   4555 57889999999987543  23344333 3357999999999999999999999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG  171 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~  171 (246)
                      ++++        ++++.+......+ .++++.+.++..++......++++.++.++++++.+.+.|+++ ++. +..|++
T Consensus       217 ~~~~--------~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-~~~-~~~p~~  285 (349)
T PRK07908        217 LGAP--------DVLARLTRGRAHW-PVGTLQLEAIAACCAPRAVAEAAADAARLAADRAEMVAGLRAV-GAR-VVDPAA  285 (349)
T ss_pred             ecCH--------HHHHHHHhcCCCC-CccHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhC-CcE-eccCCC
Confidence            9988        8999888765443 6788889888888874446788899999999999999999987 666 567789


Q ss_pred             ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHHHHHH
Q 042445          172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKAFY  239 (246)
Q Consensus       172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l~~~~  239 (246)
                      |+|+|++++.         .+.+.+.++++||.+.||..|+.  ++++|+|++ ++++.+++++.|++.+
T Consensus       286 g~~~~~~~~~---------~~~~~~~l~~~gI~v~~g~~f~~~~~~~vRis~~-~~~~~~~l~~al~~~~  345 (349)
T PRK07908        286 APFVLVRVPD---------AELLRKRLRERGIAVRRGDTFPGLDPDYLRLAVR-PRAEVPVLVQALAEIL  345 (349)
T ss_pred             ceEEEEECCc---------HHHHHHHHHhCCEEEEECCCCCCCCCCeEEEEeC-CCccHHHHHHHHHHHH
Confidence            9999998762         34567778899999999998854  789999997 4445666666666554

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=99.98  E-value=1.2e-31  Score=225.95  Aligned_cols=205  Identities=21%  Similarity=0.269  Sum_probs=160.9

Q ss_pred             hhhhhhhcc-c----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcc
Q 042445            2 ELINQDITR-E----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGS   76 (246)
Q Consensus         2 e~~~~~~~~-~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s   76 (246)
                      +.+++.++. +    ++++||||||.++|.+++++|+++|   +.++|+||+|.++.+..  ..+  .+...+++++++|
T Consensus       143 ~~l~~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~~---~~~ii~De~y~~~~~~~--~~~--~~~~~~~vi~~~S  215 (356)
T PRK04870        143 PAMLAAIAEHRPALVFLAYPNNPTGNLFDDADVERIIEAA---PGLVVVDEAYQPFAGDS--WLP--RLARFPNLLVMRT  215 (356)
T ss_pred             HHHHHHhhcCCCCEEEEcCCCCCCCCCCCHHHHHHHHHHC---CCEEEEECCchhhcCcc--hHH--HHhhCCCEEEEec
Confidence            445555532 2    7889999999999999999999988   78899999999876432  111  2334568999999


Q ss_pred             cccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 042445           77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDR  156 (246)
Q Consensus        77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  156 (246)
                      ||| +++||+|+||+++++        ++++.+......+ +++.+.|.++..++++  ..++++.++.++++++.+.+.
T Consensus       216 ~SK-~~~~GlRiG~~i~~~--------~~i~~~~~~~~~~-~~~~~~q~~a~~~l~~--~~~~~~~~~~~~~~~~~l~~~  283 (356)
T PRK04870        216 VSK-LGLAGLRLGYLAGHP--------AWIAELDKVRPPY-NVNVLTQATALFALEH--VDVLDAQAAQLRAERTRLAAA  283 (356)
T ss_pred             chh-hhhHHHhhhhhhCCH--------HHHHHHHHccCCC-cCCHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHH
Confidence            999 799999999999998        8999888765444 7888999998888873  346788888999999999999


Q ss_pred             hhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHH
Q 042445          157 LKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGR  234 (246)
Q Consensus       157 L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~  234 (246)
                      |++++++..  .|.+|+|+|++++.        +.+ +.+.|+++||.|+||..|+.  ++++|++++. .++.+..++.
T Consensus       284 L~~~~~~~~--~~~~~~~~~~~~~~--------~~~-~~~~l~~~gI~v~~~~~f~~~~~~~iRis~~~-~~~~~~l~~a  351 (356)
T PRK04870        284 LAALPGVTV--FPSAANFILVRVPD--------AAA-VFDGLKTRGVLVKNLSGMHPLLANCLRVTVGT-PEENAQFLAA  351 (356)
T ss_pred             HHhCCCcEE--CCCCCeEEEEECCC--------HHH-HHHHHHHCCEEEEECCCCCCCCCCeEEEeCCC-HHHHHHHHHH
Confidence            998878753  56778899988761        444 45678899999999988854  7899999994 4445555555


Q ss_pred             HHH
Q 042445          235 MKA  237 (246)
Q Consensus       235 l~~  237 (246)
                      |.+
T Consensus       352 l~~  354 (356)
T PRK04870        352 LKA  354 (356)
T ss_pred             HHH
Confidence            554

>PRK08354 putative aminotransferase; Provisional

Probab=99.98  E-value=8e-31  Score=216.92  Aligned_cols=185  Identities=14%  Similarity=0.202  Sum_probs=135.7

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      +++|||||||.+++.+++++|+++|+++|+++|+||+|.++.+++..      . ..+++++++||||.|++||+|+||+
T Consensus       122 i~~~P~NPTG~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~~------~-~~~~vi~~~S~SK~~~l~GlRiG~~  194 (311)
T PRK08354        122 FFCNPNNPDGKFYNFKELKPLLDAVEDRNALLILDEAFIDFVKKPES------P-EGENIIKLRTFTKSYGLPGIRVGYV  194 (311)
T ss_pred             EEecCCCCCCCccCHHHHHHHHHHhhhcCcEEEEeCcchhccccccc------c-CCCcEEEEeccHhhcCCccceeeee
Confidence            88999999999999999999999999999999999999999886421      1 1468999999999999999999999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG  171 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~  171 (246)
                      ++..        +   .++.....+ .++...+.++..++.. ...++.+.++.++++++.+.+.+        ...|++
T Consensus       195 v~~~--------~---~l~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l--------~~~~~~  253 (311)
T PRK08354        195 KGFE--------E---AFRSVRMPW-SIGSTGYAFLEFLIED-DFEHLRKTMPLIWREKERFEKAL--------YVKSDA  253 (311)
T ss_pred             eehH--------H---HHHHcCCCc-cCCHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHhc--------CCCCCC
Confidence            9832        3   344443333 6677778887777763 23455555665565555544332        124555


Q ss_pred             ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecC--hHHHHHHHHH
Q 042445          172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVE--PSALENGLGR  234 (246)
Q Consensus       172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~--~~~l~~~~~~  234 (246)
                      ++++ ++++        ++.+++ +.+.++||.+.||..|+.++++|++++.+  .+.+.++++.
T Consensus       254 ~~~~-~~~~--------~~~~~~-~~l~~~gv~v~~g~~f~~~~~iRi~~~~~~~~~~l~~al~~  308 (311)
T PRK08354        254 NFFI-KDVG--------DAEKFV-EFLKRNGILVRDCTSFGLPGYIRFSVRDREENEKLIRALRE  308 (311)
T ss_pred             cEEE-EECC--------CHHHHH-HHHHHCCeEEEecccCCCCCeEEEEeCCHHHHHHHHHHHHH
Confidence            5554 5543        244554 45678899999999997789999999952  3455555544

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=99.97  E-value=1e-30  Score=220.09  Aligned_cols=202  Identities=17%  Similarity=0.256  Sum_probs=158.8

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      +++|||||||.++|.+++++|++.++  |+++|+||+|.++.  +....+  .....+++++++||||.|+++|+|+||+
T Consensus       149 ~~~~P~NPtG~~~~~~~~~~l~~~~~--~~~livDe~y~~~~--~~~~~~--~~~~~~~~i~~~S~SK~~~~~GlR~G~~  222 (353)
T PRK05387        149 IFPNPNAPTGIALPLAEIERILAANP--DSVVVIDEAYVDFG--GESAIP--LIDRYPNLLVVQTFSKSRSLAGLRVGFA  222 (353)
T ss_pred             EEeCCCCCCCCCCCHHHHHHHHHhCC--CcEEEEeCcccccC--CcchHH--HHhhCCCEEEEEehhHhhcchhhhceee
Confidence            88999999999999999999988643  99999999998763  222212  2233468999999999999999999999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhhh--cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLNI--SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKP  169 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~  169 (246)
                      ++++        ++++.+......  ..+++.+.|.++..++.  ...+.++.++.+.++++.+.+.|+++ ++. + .|
T Consensus       223 ~~~~--------~~~~~l~~~~~~~~~~~~~~~~q~~~~~~l~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~-~~  289 (353)
T PRK05387        223 IGHP--------ELIEALNRVKNSFNSYPLDRLAQAGAIAAIE--DEAYFEETRAKVIATRERLVEELEAL-GFE-V-LP  289 (353)
T ss_pred             ecCH--------HHHHHHHHhhccCCCCCcCHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHHHHHC-CCe-E-CC
Confidence            9988        889988876532  23678999999999997  35677888889999999999999987 665 2 56


Q ss_pred             CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHHHH
Q 042445          170 EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYD  240 (246)
Q Consensus       170 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~~  240 (246)
                      .+++|+|++++..      ++.++. +.|.++||.+.+......++++|++++ ++++++++++.|.+++.
T Consensus       290 ~~~~~~~~~~~~~------~~~~~~-~~l~~~gi~v~~~~~~~~~~~iRis~~-~~~~~~~~~~~L~~~~~  352 (353)
T PRK05387        290 SKANFVFARHPSH------DAAELA-AKLRERGIIVRHFNKPRIDQFLRITIG-TDEEMEALVDALKEILA  352 (353)
T ss_pred             CcCcEEEEECCCC------CHHHHH-HHHHHCCEEEEECCCCCCCCeEEEEeC-CHHHHHHHHHHHHHHhh
Confidence            7889999877632      245554 456788999986433333689999998 56788999999988764

>PRK04635 histidinol-phosphate aminotransferase; Provisional

Probab=99.97  E-value=4.2e-31  Score=222.36  Aligned_cols=200  Identities=13%  Similarity=0.137  Sum_probs=156.2

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      +++|||||||.+++.+++++|++.|+  +++||+||+|.++....   .........+++++++||||.|+++|+|+||+
T Consensus       152 ~i~nP~NPTG~~~~~~~l~~l~~~~~--~~~vivDeay~~~~~~~---s~~~~~~~~~~~iv~~S~SK~~~l~GlRlG~~  226 (354)
T PRK04635        152 FICNPNNPTGTVIDRADIEQLIEMTP--DAIVVVDEAYIEFCPEY---SVADLLASYPNLVVLRTLSKAFALAGARCGFT  226 (354)
T ss_pred             EEeCCCCCCCccCCHHHHHHHHHhCC--CcEEEEeCchHhhccCc---chHHHHhhCCCEEEEechHHHhhhhHHHHhhh
Confidence            88999999999999999999998876  49999999999886332   11111233468999999999999999999999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG  171 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~  171 (246)
                      ++++        ++++.+......+ +++.+.|.++.+++.+....++++..+.++++++.+.+.|++++++. +.+| +
T Consensus       227 i~~~--------~~~~~l~~~~~~~-~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~-~~~~-~  295 (354)
T PRK04635        227 LANE--------ELIEILMRVIAPY-PVPLPVSEIATQALSEAGLARMKFQVLDLNAQGARLQAALSMYGGAK-VLEG-N  295 (354)
T ss_pred             hCCH--------HHHHHHHhhcCCC-CCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCce-ECCC-C
Confidence            9988        8998887654433 67888898988998754456678888889999999999999886665 3444 5


Q ss_pred             ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHH
Q 042445          172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKA  237 (246)
Q Consensus       172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~  237 (246)
                      |+|+|++++.        ..+ +.+++.++||.++++..+..++++|+|++ ++++++..++.|++
T Consensus       296 g~f~~~~~~~--------~~~-~~~~l~~~gv~v~~~~~~~~~~~lRis~~-~~e~~~~l~~al~~  351 (354)
T PRK04635        296 GNYVLAKFDD--------VDA-VFKALWDAGIVARAYKDPRLANCIRFSFS-NRAETDKLIGLIRN  351 (354)
T ss_pred             CcEEEEECCC--------HHH-HHHHHHHCCEEEEECCCCCCCCeEEEEeC-CHHHHHHHHHHHHH
Confidence            7899987752        334 45678899999987654445789999998 55667777766653

>PLN02368 alanine transaminase

Probab=99.97  E-value=3.3e-31  Score=225.55  Aligned_cols=162  Identities=19%  Similarity=0.249  Sum_probs=134.3

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCC-CCcccccc----C----CcccEEEEccccccc-
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNT-PFVSMGVF----G----SIVPLLTLGSISKRG-   81 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~----~----~~~~~i~~~s~sK~~-   81 (246)
                      +++|||||||.++|.+++++|+++|++||++||+||+|.++.|++. ++.++..+    +    ..+++|+++||||.| 
T Consensus       215 ~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~  294 (407)
T PLN02368        215 VIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYW  294 (407)
T ss_pred             EEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccc
Confidence            8999999999999999999999999999999999999999999763 34443322    1    245899999999998 


Q ss_pred             ccCCceEEEEEe---eCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhch------HHHH---HHHHHHHHHH
Q 042445           82 IVPGLRLGWLVT---SDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTE------EEFF---SKIIDILRET  149 (246)
Q Consensus        82 ~~~g~r~G~i~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~------~~~~---~~~~~~~~~~  149 (246)
                      ++||+|+||+++   +.        ++++.+........++|.++|.++..+|....      +.+.   ++..+.+++|
T Consensus       295 ~~~GlRiGy~i~~~~~~--------~li~~~~~~~~~~~~~~~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r  366 (407)
T PLN02368        295 GECGQRGGYFEMTNIPP--------KTVEEIYKVASIALSPNVSGQIFMGLMVNPPKPGDISYDQFVRESKGILESLRRR  366 (407)
T ss_pred             cCCccceEEEEEeCCCH--------HHHHHHHHHhcccCCCCcHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence            899999999995   55        88888887644444789999999999997532      1233   5568899999


Q ss_pred             HHHHHHHhhcCCCCccccCCCCceEEEEEeccc
Q 042445          150 ADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYS  182 (246)
Q Consensus       150 ~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~  182 (246)
                      ++.+.+.|++++|+. +..|+||||+|++++.+
T Consensus       367 r~~~~~~L~~~~g~~-~~~P~Gafy~~~~i~lp  398 (407)
T PLN02368        367 ARMMTDGFNSCKNVV-CNFTEGAMYSFPQIKLP  398 (407)
T ss_pred             HHHHHHHHhCCCCeE-eCCCCeeeEeccCCCCC
Confidence            999999999998887 57899999999877643

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=99.97  E-value=2.9e-30  Score=217.05  Aligned_cols=206  Identities=21%  Similarity=0.290  Sum_probs=153.3

Q ss_pred             hhhhhhhcc-c----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcc
Q 042445            2 ELINQDITR-E----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGS   76 (246)
Q Consensus         2 e~~~~~~~~-~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s   76 (246)
                      +.+++.+++ +    +++|||||||.+++.+++.+++   ++++.++|+||+|.++. +. ...+  .+...+++|+++|
T Consensus       138 ~~l~~~~~~~~~k~v~l~~p~NPtG~~~~~~~l~~l~---~~~~~~~ivDe~y~~~~-~~-~~~~--~~~~~~~vi~~~S  210 (351)
T PRK14807        138 GSFIKVIEKYQPKLVFLCNPNNPTGSVIEREDIIKII---EKSRGIVVVDEAYFEFY-GN-TIVD--VINEFENLIVLRT  210 (351)
T ss_pred             HHHHHHhhccCCCEEEEeCCCCCCCCCCCHHHHHHHH---HhCCCEEEEeCcchhhc-cc-chHH--HhhhCCCEEEEec
Confidence            345555543 2    7789999999999977766665   56678899999998874 32 2222  2234568999999


Q ss_pred             cccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 042445           77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDR  156 (246)
Q Consensus        77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  156 (246)
                      |||.|++||+|+||+++++        ++++.+......+ +++++.|.++..++.+   .++++..+.++++++.+.+.
T Consensus       211 ~SK~~~~~GlRiG~~v~~~--------~~~~~~~~~~~~~-~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~r~~l~~~  278 (351)
T PRK14807        211 LSKAFGLAGLRVGYAVANE--------NILKYLNLVKSPY-NINSLSQVIALKVLRT---GVLKERVNYILNERERLIKE  278 (351)
T ss_pred             chHhcccchhceeeeecCH--------HHHHHHHHccCCC-CcCHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988        8999888765543 6899999999999984   35666777788899999999


Q ss_pred             hhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCC-cCCCCeEEEEeecChHHHHHHHHHH
Q 042445          157 LKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGIT-VGLKDWLRITFAVEPSALENGLGRM  235 (246)
Q Consensus       157 L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~-f~~~~~iRls~~~~~~~l~~~~~~l  235 (246)
                      |++++|+. + .|.+|+|+|++++         +.+.+.+.|.++||.|.++.. ++.++++|++++.+ ++.+..++.|
T Consensus       279 l~~~~g~~-~-~~~~~~~~~i~~~---------~~~~~~~~l~~~gV~v~~~~~~~~~~~~iRis~~~~-~~~~~l~~~l  346 (351)
T PRK14807        279 LSKIPGIK-V-YPSKTNFILVKFK---------DADYVYQGLLERGILVRDFSKVEGLEGALRITVSSC-EANDYLINGL  346 (351)
T ss_pred             HHhCCCcE-E-CcCCccEEEEEcC---------CHHHHHHHHHHCCEEEEECCCCCCCCCeEEEEcCCH-HHHHHHHHHH
Confidence            98877875 3 4667889998875         234456667788999998654 34478999999953 3344555555


Q ss_pred             HHH
Q 042445          236 KAF  238 (246)
Q Consensus       236 ~~~  238 (246)
                      +++
T Consensus       347 ~~~  349 (351)
T PRK14807        347 KEL  349 (351)
T ss_pred             HHh
Confidence            443

>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]

Probab=99.97  E-value=5.1e-30  Score=200.05  Aligned_cols=217  Identities=19%  Similarity=0.283  Sum_probs=176.8

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      +.+.|.||||.+++++++.+|-+++++||+.+|+|.+|+.- |.+--++- ..+...+|++.+-|+||. |+||.|+|.+
T Consensus       184 c~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~P-FP~iifsd-~~~~w~~NiilC~SLSK~-GLPG~R~GIi  260 (417)
T COG3977         184 CVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVP-FPGIIFSD-ATPLWNENIILCMSLSKL-GLPGSRCGII  260 (417)
T ss_pred             EecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCC-CCceeccc-ccccCCCCEEEEeehhhc-CCCCcceeEE
Confidence            78899999999999999999999999999999999999841 22211111 122335689999999999 9999999999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHH--HHHHHHHHHHHHHHHHHHHhhc-CCCCcc-c
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEE--FFSKIIDILRETADKCCDRLKE-IPCITC-P  166 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~--~~~~~~~~~~~~~~~l~~~L~~-~~~~~~-~  166 (246)
                      ++.+        +++..+.+... .+..++.++++.+++++++++..  .-+-.+-.|+.+.+...+.|++ +|...+ .
T Consensus       261 Iane--------~viqaitnmn~iisLap~~~G~Aia~~mie~gdl~rlseqVIrPFY~~~~q~~~~~l~~~lp~~~~~i  332 (417)
T COG3977         261 IANE--------KVIQAITNMNGIISLAPGRMGPAIAAEMIESGDLLRLSEQVIRPFYRNRVQTTIAILRRYLPEYRCLI  332 (417)
T ss_pred             EccH--------HHHHHHHhccceeeecCCCccHHHHHHHhhcchHHHHHHHhhhHHHHHHHHHHHHHHHHhcCccceee
Confidence            9998        89988888754 35588999999999999988732  2334566888888888888886 654322 5


Q ss_pred             cCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC---------CCeEEEEeecChHHHHHHHHHHHH
Q 042445          167 KKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---------KDWLRITFAVEPSALENGLGRMKA  237 (246)
Q Consensus       167 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---------~~~iRls~~~~~~~l~~~~~~l~~  237 (246)
                      +.|+|+.|+|+++.+..+     +.+.+++.|+++|+.++||.+|..         ..++|+++..+++.++.++++|.+
T Consensus       333 HkpEGAIFlWLWf~dLPI-----tt~~LYq~LKa~Gvl~VPG~~FFpGl~~ewpH~hqC~Rmn~~~~~~~ie~Gva~lae  407 (417)
T COG3977         333 HKPEGAIFLWLWFKDLPI-----TTEELYQRLKARGVLMVPGHYFFPGLDKEWPHTHQCMRMNYVPEPEKIEKGVAILAE  407 (417)
T ss_pred             ecCCcceeehhhhccCCC-----CHHHHHHHHHhCeEEEecccccCCCCCCCCCCccceEEEecCCCHHHHHHHHHHHHH
Confidence            899999999999987643     455567789999999999999864         589999999999999999999999


Q ss_pred             HHHHHhh
Q 042445          238 FYDRHAE  244 (246)
Q Consensus       238 ~~~~~~~  244 (246)
                      .+++..+
T Consensus       408 ~ve~~yq  414 (417)
T COG3977         408 EVERAYQ  414 (417)
T ss_pred             HHHHHHh
Confidence            9987554

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=99.97  E-value=1.7e-30  Score=219.91  Aligned_cols=200  Identities=18%  Similarity=0.265  Sum_probs=155.6

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      +++|||||||.+++.+++++|+++|   ++++|+||+|.++.+++. .......+..+++++++||||.||++|+|+||+
T Consensus       165 ~l~~p~NPtG~~~~~~~l~~l~~~~---~~~lI~DE~y~~~~~~~~-~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~  240 (368)
T PRK03317        165 FLTSPNNPTGTALPLDDVEAILDAA---PGIVVVDEAYAEFRRSGT-PSALTLLPEYPRLVVSRTMSKAFAFAGGRLGYL  240 (368)
T ss_pred             EEeCCCCCCCCCCCHHHHHHHHHHC---CceEEEeCCchhhcccCC-cCHHHHHHhCCCEEEEEechhhhccchhhhhhh
Confidence            7899999999999988888887766   799999999999876653 222222334458999999999999999999999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG  171 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~  171 (246)
                      ++++        ++++.+...... +++|++.|.++..+++. .+ +..+.++.++++++.+.+.|++. |+. +..|++
T Consensus       241 ~~~~--------~~~~~l~~~~~~-~~~s~~~~~a~~~~l~~-~~-~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~~  307 (368)
T PRK03317        241 AAAP--------AVVDALRLVRLP-YHLSAVTQAAARAALRH-AD-ELLASVAALRAERDRVVAWLREL-GLR-VAPSDA  307 (368)
T ss_pred             hCCH--------HHHHHHHhcCCC-CCCCHHHHHHHHHHhhC-HH-HHHHHHHHHHHHHHHHHHHHHHC-CCE-eCCCCC
Confidence            9988        999988876543 37899999999999974 23 33445566888999999999887 665 567888


Q ss_pred             ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHHHHH
Q 042445          172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDR  241 (246)
Q Consensus       172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~~~  241 (246)
                      ++++|.+++        ++.+ +.+.+.++||.+.+.   +.++++|++++ ++++++.+++.|.+.++.
T Consensus       308 ~~~~~~~~~--------~~~~-~~~~l~~~Gv~v~~~---~~~~~iRi~~~-~~~~~~~~~~~l~~~~~~  364 (368)
T PRK03317        308 NFVLFGRFA--------DRHA-VWQGLLDRGVLIRDV---GIPGWLRVTIG-TPEENDAFLAALAEVLAT  364 (368)
T ss_pred             cEEEEeccC--------CHHH-HHHHHHHCCEEEEeC---CCCCeEEEecC-CHHHHHHHHHHHHHHHHH
Confidence            888886543        1344 455677899999874   33789999998 556688888888887754

>PRK09105 putative aminotransferase; Provisional

Probab=99.97  E-value=2.6e-30  Score=218.51  Aligned_cols=198  Identities=14%  Similarity=0.160  Sum_probs=153.0

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      +++|||||||.++|.++++++++.++ +++++|+||+|.++...   .......+..++++++.||||.||++|+|+||+
T Consensus       170 ~l~nP~NPTG~~~~~~~l~~l~~~~~-~~~~lIvDEaY~~f~~~---~s~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~  245 (370)
T PRK09105        170 YICNPNNPTGTVTPRADIEWLLANKP-AGSVLLVDEAYIHFSDA---PSVVDLVAQRKDLIVLRTFSKLYGMAGMRLGLA  245 (370)
T ss_pred             EEeCCCCCCCcCcCHHHHHHHHHhCC-CCcEEEEECchHHhccC---cchHHHHhhCCCEEEEecccHhhcCCccceeee
Confidence            78999999999999999999998764 59999999999876532   112222234568999999999999999999999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG  171 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~  171 (246)
                      ++++        ++++.+... . ...++.+.|.++..++.+  +.++++.++.++++++.+.+.|+++ ++. +..|++
T Consensus       246 v~~~--------~~i~~l~~~-~-~~~~~~~~~~aa~~~L~~--~~~~~~~~~~~~~~r~~l~~~L~~~-g~~-~~~~~~  311 (370)
T PRK09105        246 AARP--------DLLAKLARF-G-HNPLPVPAAAAGLASLRD--PKLVPQRRAENAAVREDTIAWLKKK-GYK-CTPSQA  311 (370)
T ss_pred             ecCH--------HHHHHHHhc-C-CCCcCHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHHHC-CCC-cCCCCC
Confidence            9988        889888776 3 336888899999888873  6789999999999999999999987 665 456666


Q ss_pred             ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC-CCeEEEEeecChHHHHHHHHHHHHHH
Q 042445          172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-KDWLRITFAVEPSALENGLGRMKAFY  239 (246)
Q Consensus       172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~iRls~~~~~~~l~~~~~~l~~~~  239 (246)
                      ++| +++++.       ++.++...++ ++||.+  |..|+. ++++|++++. ++++++.++.|.+++
T Consensus       312 ~f~-~~~~~~-------~~~~l~~~L~-~~gI~v--~~~~~~~~~~~Ris~~~-~~~~~~l~~al~~~~  368 (370)
T PRK09105        312 NCF-MVDVKR-------PAKAVADAMA-KQGVFI--GRSWPIWPNWVRVTVGS-EEEMAAFRSAFAKVM  368 (370)
T ss_pred             cEE-EEeCCC-------CHHHHHHHHH-HCCcEE--ecCCCCCCCeEEEEcCC-HHHHHHHHHHHHHHh
Confidence            655 566642       2556655544 669998  334543 7999999994 555677777766654

>PRK14808 histidinol-phosphate aminotransferase; Provisional

Probab=99.97  E-value=3.3e-30  Score=215.20  Aligned_cols=191  Identities=18%  Similarity=0.227  Sum_probs=149.3

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      +++|||||||.++|.+++++|+    +++++||+||+|.++.  +..+.+  .+...+++++++||||.|+++|+|+||+
T Consensus       143 ~i~nP~NPTG~~~s~~~l~~l~----~~~~~ii~DE~Y~~f~--~~~~~~--~~~~~~~vi~~~S~SK~~~l~GlRvG~~  214 (335)
T PRK14808        143 FIPNPNNPTGHVFEREEIERIL----KTGAFVALDEAYYEFH--GESYVD--LLKKYENLAVIRTFSKAFSLAAQRIGYV  214 (335)
T ss_pred             EEeCCCCCCCCCcCHHHHHHHH----hcCCEEEEECchhhhc--CCchHH--HHHhCCCEEEEEechhhccCcccceEEE
Confidence            8899999999999999888886    4799999999999975  212212  1233458999999999999999999999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG  171 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~  171 (246)
                      ++++        ++++.+......+ +++.++|.++..+++.  ..+..+..+.++++++.+.+.|+++ |+. +..| .
T Consensus       215 v~~~--------~~~~~l~~~~~~~-~~~~~~q~a~~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~-g~~-~~~~-~  280 (335)
T PRK14808        215 VSSE--------KFIDAYNRVRLPF-NVSYVSQMFAKVALDH--REIFEERTKFIVEERERMKSALREM-GYR-ITDS-R  280 (335)
T ss_pred             EeCH--------HHHHHHHHhcCCC-CCCHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHHHC-CCE-ECCC-C
Confidence            9998        9999997765443 7899999999888873  3466777778888899999999987 565 3445 5


Q ss_pred             ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHH
Q 042445          172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKA  237 (246)
Q Consensus       172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~  237 (246)
                      |.|+|++++..       +...+.+.+.++||.|+.   |  .+++|++++. .++.++.++.|++
T Consensus       281 g~f~~~~l~~~-------~~~~~~~~l~~~Gi~V~~---~--~~~~Risi~~-~~~~~~~~~~l~~  333 (335)
T PRK14808        281 GNFVFIFMEKE-------EKERLLEHLRAKNIAVRS---F--REGVRITIGK-REENDMILKELEV  333 (335)
T ss_pred             CeEEEEeCCCc-------cHHHHHHHHHHCCeEEEE---C--CCCeEEecCC-HHHHHHHHHHHHh
Confidence            77889888732       335556778899999984   3  4789999985 4556677766654

>PRK03321 putative aminotransferase; Provisional

Probab=99.97  E-value=2.2e-30  Score=217.96  Aligned_cols=200  Identities=18%  Similarity=0.241  Sum_probs=153.3

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      ++++||||||.+++.+++.++++.+ ++|+++|+||+|.++.+++....++..+...+++++++||||.|++||+|+||+
T Consensus       150 ~l~~p~NPtG~~~~~~~l~~l~~~~-~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~  228 (352)
T PRK03321        150 FVCNPNNPTGTVVTPAELARFLDAV-PADVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVVLRTFSKAYGLAGLRVGYA  228 (352)
T ss_pred             EEeCCCCCcCCCcCHHHHHHHHHhC-CCCeEEEEechHHHhccCcCCCcHHHHHhhCCCEEEEecchHHhhhHHHhhhhh
Confidence            7889999999999998888888765 479999999999999887643334444455578999999999999999999999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG  171 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~  171 (246)
                      ++++        ++++.+...... .++|.++|.++..++.. .+.+.+..++ +.++++.+.+.|++. ++..  .+.+
T Consensus       229 v~~~--------~~~~~~~~~~~~-~~~s~~~q~~a~~~l~~-~~~~~~~~~~-~~~~r~~~~~~L~~~-~~~~--~~~~  294 (352)
T PRK03321        229 VGHP--------EVIAALRKVAVP-FSVNSLAQAAAIASLAA-EDELLERVDA-VVAERDRVRAALRAA-GWTV--PPSQ  294 (352)
T ss_pred             cCCH--------HHHHHHHHhcCC-CCCCHHHHHHHHHHhcC-HHHHHHHHHH-HHHHHHHHHHHHHHC-CCcc--CCCC
Confidence            9988        999998876433 37899999998888873 3444444444 455667788999886 5542  4557


Q ss_pred             ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHHH
Q 042445          172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFY  239 (246)
Q Consensus       172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~  239 (246)
                      |+|+|++++.       ++.++ .+.|+++||.+.|   |+ .+++|++++ ..++.++++++|.+++
T Consensus       295 g~~i~i~l~~-------~~~~~-~~~l~~~gI~v~~---~~-~~~iRi~~~-~~~~~~~~~~al~~~~  349 (352)
T PRK03321        295 ANFVWLPLGE-------RTADF-AAAAAEAGVVVRP---FA-GEGVRVTIG-APEENDAFLRAARAWR  349 (352)
T ss_pred             CCEEEEeCCC-------CHHHH-HHHHHHCCEEEEc---cC-CCcEEEeeC-CHHHHHHHHHHHHHHh
Confidence            8999988742       24455 4456789999987   32 467999997 5566788888887764

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=99.97  E-value=5.9e-30  Score=216.09  Aligned_cols=206  Identities=17%  Similarity=0.157  Sum_probs=156.9

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      |.+++.+..+    ++++||||||.+++.+++.+   +|+++|+++|+||+|.++. +. ...++  ....+++++++||
T Consensus       149 ~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~---l~~~~~~~li~De~y~~~~-~~-~~~~~--~~~~~~vi~~~S~  221 (361)
T PRK00950        149 DSVLNAITEKTKVIFLCTPNNPTGNLIPEEDIRK---ILESTDALVFVDEAYVEFA-EY-DYTPL--ALEYDNLIIGRTF  221 (361)
T ss_pred             HHHHHHhccCCCEEEEeCCCCCCCCCcCHHHHHH---HHHHCCcEEEEECchhhhC-cc-chHHH--HHhcCCEEEEEee
Confidence            3455554433    77899999999999765554   5577899999999999876 21 22221  2234589999999


Q ss_pred             ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRL  157 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L  157 (246)
                      ||.||+||+|+||+++++        ++++.+......+ +++++.|.++..++.+  ..++++.++.++++++.+.+.|
T Consensus       222 SK~~g~~GlRiG~~~~~~--------~~~~~~~~~~~~~-~~~~~~~~~a~~~l~~--~~~~~~~~~~~~~~r~~l~~~l  290 (361)
T PRK00950        222 SKVFGLAGLRIGYGFVPE--------WLIDYYMRAKTPF-SLTRLSQAAAIAALSD--KEYIEKSIEHGIKSREYLYNEL  290 (361)
T ss_pred             hHhhcCchhhcchhcCCH--------HHHHHHHHhcCCC-CCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999988        8888888775544 6889999999999973  5677888888888888888777


Q ss_pred             hcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHH
Q 042445          158 KEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRM  235 (246)
Q Consensus       158 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l  235 (246)
                      +    +.  ..|.+++|+|++++..      ++.+++. .|.++||.+.||..|+.  ++++|+|++ +.++++++++.|
T Consensus       291 ~----~~--~~~~~~~~i~~~~~~~------~~~~~~~-~l~~~gv~v~~~~~f~~~~~~~lRis~~-~~~~~~~l~~~L  356 (361)
T PRK00950        291 P----FK--VYPSEANFVLVDVTPM------TAKEFCE-ELLKRGVIVRDCTSFRGLGDYYIRVSIG-TFEENERFLEIL  356 (361)
T ss_pred             C----ee--ECCCcceEEEEECCCC------CHHHHHH-HHHHCCEEEeeCCccCCCCCCeEEEECC-CHHHHHHHHHHH
Confidence            5    33  2567889999988421      3555555 45578999999988854  679999999 556788888888


Q ss_pred             HHHH
Q 042445          236 KAFY  239 (246)
Q Consensus       236 ~~~~  239 (246)
                      ++.+
T Consensus       357 ~~il  360 (361)
T PRK00950        357 KEIV  360 (361)
T ss_pred             HHHh
Confidence            7765

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=99.97  E-value=7.8e-30  Score=214.16  Aligned_cols=198  Identities=20%  Similarity=0.296  Sum_probs=159.8

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      ++++||||||.+++.+++.++++.++ +|+++|+||+|.++...+... .  .....+++++++|+||.|+++|+|+||+
T Consensus       147 ~l~~p~NptG~~~~~~~~~~l~~~~~-~~~~ii~D~~y~~~~~~~~~~-~--~~~~~~~~i~~~S~sK~~g~~G~r~G~~  222 (346)
T TIGR01141       147 FLCSPNNPTGNLLSRSDIEAVLERTP-EDALVVVDEAYGEFSGEPSTL-P--LLAEYPNLIVLRTLSKAFGLAGLRIGYA  222 (346)
T ss_pred             EEeCCCCCCCCCCCHHHHHHHHHhCC-CCcEEEEECchhhhcCCccHH-H--HHhhCCCEEEEehhhHhhhchhhhceee
Confidence            78899999999999999999998887 799999999999776543211 1  1222347899999999999999999999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG  171 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~  171 (246)
                      ++++        ++++.++.....+ ++++++|.++..+++..  .+.++.++.++++++.+.+.|++++++..  .|.+
T Consensus       223 ~~~~--------~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~~g~~~--~~~~  289 (346)
T TIGR01141       223 IANA--------EIIDALNKVRAPF-NLSRLAQAAAIAALRDD--DFIEKTVEEINAERERLYDGLKKLPGLEV--YPSD  289 (346)
T ss_pred             ecCH--------HHHHHHHhccCCC-CCCHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHhcCCCEE--CCCc
Confidence            9988        8888888765443 77899999999999853  37888999999999999999998877762  4567


Q ss_pred             ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC-CCeEEEEeecChHHHHHHHHHH
Q 042445          172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-KDWLRITFAVEPSALENGLGRM  235 (246)
Q Consensus       172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~iRls~~~~~~~l~~~~~~l  235 (246)
                      |+|+|++++.       ++.++ .+.|.++||.+.||..|+. ++++|+|++ ++++++++++.|
T Consensus       290 g~~~~~~~~~-------~~~~~-~~~L~~~gI~v~~g~~f~~~~~~iRls~~-~~~~i~~~~~~l  345 (346)
T TIGR01141       290 ANFVLIRFPR-------DADAL-FEALLEKGIIVRDLNSYPGLPNCLRITVG-TREENDRFLAAL  345 (346)
T ss_pred             CCEEEEecCC-------CHHHH-HHHHHHCCeEEEeCCCcCCCCCeEEEecC-CHHHHHHHHHHh
Confidence            8999988763       24555 4556688999999998855 799999988 677788877765

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>PRK03967 histidinol-phosphate aminotransferase; Provisional

Probab=99.96  E-value=1.2e-28  Score=206.15  Aligned_cols=188  Identities=17%  Similarity=0.227  Sum_probs=140.2

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      +++|||||||.+++.+++.+++    ++|+++|+||+|.++...  .+.+  .....+++|+++||||.|++||+|+||+
T Consensus       145 ~~~~P~NPtG~~~~~~~l~~i~----~~~~~ii~De~y~~~~~~--~~~~--~~~~~~~vi~l~S~SK~~~l~GlRiG~i  216 (337)
T PRK03967        145 FICSPNNPTGNLQPEEEILKVL----ETGKPVVLDEAYAEFSGK--SLIG--LIDEYPNLILLRTFSKAFGLAGIRAGYA  216 (337)
T ss_pred             EEeCCCCCCCCCCCHHHHHHHH----hcCCEEEEECchhhhccc--chHH--HHhhCCCEEEEecchHhhcchhhhheee
Confidence            7889999999999977666654    379999999999987632  2211  2233458999999999999999999999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG  171 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~  171 (246)
                      ++++        ++++.+......+ ++|.++|.++..++++  .++..+.++.+.++++.+.+.|++.      ..|++
T Consensus       217 v~~~--------~~i~~~~~~~~~~-~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~------~~~~~  279 (337)
T PRK03967        217 IANE--------EIIDALYRIKPPF-SLNILTMKIVRLALDH--YDLIEERIDYIIKERERVRRELGEY------AYPSD  279 (337)
T ss_pred             ecCH--------HHHHHHHhhcCCC-CCCHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHhccC------cCCCC
Confidence            9988        8999998876555 7899999999999973  3355556666677788888888764      24688


Q ss_pred             ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHHH
Q 042445          172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFY  239 (246)
Q Consensus       172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~  239 (246)
                      ++|+|++++             +.+.|.++||.++++.. ...+++|++++. .++.++.++.|.++.
T Consensus       280 ~~~~~~~~~-------------~~~~l~~~gi~v~~~~~-~~~~~~Ri~~~~-~~~~~~l~~~l~~~~  332 (337)
T PRK03967        280 ANFLLLKLD-------------AYDYLLENGIVVRKLSG-RLEGHIRVTVGK-REENDEFIKALKEIK  332 (337)
T ss_pred             CcEEEEhHH-------------HHHHHHHCCEEEEeCCC-CCCCeEEEecCC-HHHHHHHHHHHHHHH
Confidence            999997542             23456678999998653 236799999995 233344444444443

>cd00609 AAT_like Aspartate aminotransferase family

Probab=99.95  E-value=7.2e-26  Score=189.84  Aligned_cols=210  Identities=29%  Similarity=0.482  Sum_probs=172.7

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      ++++|+||||.+++.+++.+|+++|+++|+++|+|++|+.+.+.+.........+..+.+++++|++|.++.+|.++||+
T Consensus       137 ~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i  216 (350)
T cd00609         137 YLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYL  216 (350)
T ss_pred             EEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCcccccccCcCccCcEEEEeecccccCCcccceEEE
Confidence            77779999999999999999999999999999999999988876544322223344557899999999998899999999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCC
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPE  170 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~  170 (246)
                      ++++.       ++.+.++..... +.+.+...+.++..++.... .+.++.++.++++++.+.+.|++.+... ...+.
T Consensus       217 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~  287 (350)
T cd00609         217 IAPPE-------ELLERLKKLLPYTTSGPSTLSQAAAAAALDDGE-EHLEELRERYRRRRDALLEALKELGPLV-VVKPS  287 (350)
T ss_pred             ecCHH-------HHHHHHHHHHHhcccCCChHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHHHhcCCcc-ccCCC
Confidence            99873       577777776443 35789999999999998543 7788889999999999999999875443 24678


Q ss_pred             CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcC--CCCeEEEEeecChHHHHHHHHHHH
Q 042445          171 GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG--LKDWLRITFAVEPSALENGLGRMK  236 (246)
Q Consensus       171 ~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~--~~~~iRls~~~~~~~l~~~~~~l~  236 (246)
                      +|+++|++++..      .+.+.+.+++.++||.+.++..|.  .++++|++++...++++.++++|+
T Consensus       288 ~g~~~~~~~~~~------~~~~~~~~~l~~~gi~i~~~~~~~~~~~~~iRi~~~~~~~~i~~~~~al~  349 (350)
T cd00609         288 GGFFLWLDLPEG------DDEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFATPEEELEEALERLA  349 (350)
T ss_pred             ccEEEEEecCCC------ChHHHHHHHHHhCCEEEecccccccCCCCeEEEEeeCCHHHHHHHHHHhh
Confidence            899999888653      256677888999999999998887  588999999977888888888875

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases

Probab=99.94  E-value=1.2e-25  Score=182.06  Aligned_cols=213  Identities=20%  Similarity=0.264  Sum_probs=151.3

Q ss_pred             cccCCcCCCccCCChhhHHHHHHH-HHHcCCEEEEccccCCcccC-CCCCcc-c------cccCCcccEEEEcccccccc
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAET-AKKLGIMVIANEVYGHLAFG-NTPFVS-M------GVFGSIVPLLTLGSISKRGI   82 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~-~~~~~~~ii~De~y~~~~~~-~~~~~~-~------~~~~~~~~~i~~~s~sK~~~   82 (246)
                      +|.+. ||||.+||++..++++++ +...++.|++|++|....+. ..+... +      ...+..++++.+.|+||+ .
T Consensus       179 VP~yS-NPtG~tySde~vrrlA~m~~AA~DFRI~WDNAY~vHhL~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKI-T  256 (425)
T PF12897_consen  179 VPKYS-NPTGITYSDEVVRRLAAMKTAAPDFRIFWDNAYAVHHLYDEEPRDALLNILDACAKAGNPDRVYVFASTSKI-T  256 (425)
T ss_dssp             -SSS--TTT-----HHHHHHHHHS--SSTT-EEEEE-TTTT-BSSSSSS------HHHHHHHTT-TTSEEEEEESTTT-S
T ss_pred             CCCcc-CCCCccCCHHHHHHHhcCCcCCcCeEEEeecCceEeeccccccchhhhHHHHHHHHcCCCCeEEEEeccccc-c
Confidence            66666 999999999999999998 44679999999999977662 222111 1      223557799999999999 8


Q ss_pred             cCCceEEEEEeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhch---HHHHHHHHHHHHHHHHHHHHHhh
Q 042445           83 VPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTE---EEFFSKIIDILRETADKCCDRLK  158 (246)
Q Consensus        83 ~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~---~~~~~~~~~~~~~~~~~l~~~L~  158 (246)
                      .||..++++.++.        +.++.++..... +.+...+.|....+++.+..   ..++++.++.++.+.+.+.+.|+
T Consensus       257 f~GaGva~~aaS~--------~Nl~~~~~~~~~~tIgpdKvNQLRHvrff~d~~gGv~aHM~kHa~il~PKF~~V~~~L~  328 (425)
T PF12897_consen  257 FPGAGVAFFAASE--------ANLAWIKKHLSVQTIGPDKVNQLRHVRFFKDAEGGVRAHMRKHAAILRPKFEAVLEILE  328 (425)
T ss_dssp             -TTSS-EEEEE-H--------HHHHHHHHHHHHH-S---HHHHHHHHHHHHSHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCcceeeeecCH--------HHHHHHHHHhcCceeCccHHHHHHHHHHhcChhhHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            9999999999999        889988887553 55889999999999999643   58999999999999999999997


Q ss_pred             c-CC---CCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEec-CCCcCC-----CCeEEEEeec-ChHH
Q 042445          159 E-IP---CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLP-GITVGL-----KDWLRITFAV-EPSA  227 (246)
Q Consensus       159 ~-~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p-g~~f~~-----~~~iRls~~~-~~~~  227 (246)
                      + +.   ++..|..|.||||+++++..+       ..+.+.+++++.||.++| |..|.+     +..||++.+. +.++
T Consensus       329 ~~L~~~~~ia~Wt~P~GGYFIsld~~~G-------~AkrvV~lakeAGV~LT~AGAtfPyg~DP~D~nIRiAPS~P~lee  401 (425)
T PF12897_consen  329 EELGDGLGIASWTKPKGGYFISLDVLDG-------TAKRVVELAKEAGVALTPAGATFPYGKDPRDSNIRIAPSYPSLEE  401 (425)
T ss_dssp             HHHGTGGTSEEE---SBSS-EEEEESTT--------HHHHHHHHHHTTEE---TTTTSGGG--TTS-EEEE--SSS-HHH
T ss_pred             HhcCCCCCeeEecCCCCceEEEEecCCC-------hHHHHHHHHHHhCceeCCCCCCCCCCCCCCCCcEEecCCCCCHHH
Confidence            6 65   577799999999999988765       678889999999999999 766654     6899999997 8899


Q ss_pred             HHHHHHHHHHHHHH
Q 042445          228 LENGLGRMKAFYDR  241 (246)
Q Consensus       228 l~~~~~~l~~~~~~  241 (246)
                      ++.+++.+..+++-
T Consensus       402 l~~Am~~~~~cv~l  415 (425)
T PF12897_consen  402 LETAMDVFATCVKL  415 (425)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999888653

; PDB: 3D6K_C 3EZ1_A 3PPL_B.

>KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism]

Probab=99.94  E-value=4.5e-26  Score=174.91  Aligned_cols=208  Identities=17%  Similarity=0.150  Sum_probs=170.7

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      ++++|+||||..++.+++.+|++.-.  |.++|+||+|-+|+-.   .+.+..+..+.|++++.+|||.||++|+|+||.
T Consensus       165 F~tSPgNPtg~~ik~~di~KiLe~p~--nglVVvDEAYidFsg~---~S~~~lV~kYpNLivlqTlSKsfGLAGiRvG~~  239 (375)
T KOG0633|consen  165 FLTSPGNPTGSIIKEDDILKILEMPD--NGLVVVDEAYIDFSGV---ESRMKLVKKYPNLIVLQTLSKSFGLAGIRVGYG  239 (375)
T ss_pred             EEcCCCCCCcccccHHHHHHHHhCCC--CcEEEEeeeeEeeccc---cccchHhHhCCceeehhhhhhhcCcceeEeecc
Confidence            99999999999999999999997444  8999999999998842   234556677889999999999999999999999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG  171 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~  171 (246)
                      ..+.        .+.+-+......+ ++|..+..++..++++..-..++..+..+.+.+.++...|.+++++..+..+..
T Consensus       240 ~~~~--------~ia~iln~~KaPY-NiS~~~s~~AL~Als~~n~kkme~~rdaiv~er~RL~keLt~v~~~~~~~gg~d  310 (375)
T KOG0633|consen  240 AFPL--------SIAEILNRAKAPY-NISVAGSVAALAALSDSNGKKMEDVRDAIVRERERLFKELTEVPFLNDYPGGSD  310 (375)
T ss_pred             cccH--------HHHHHHHhccCCc-cccchhHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHhhcCccccCCCCccc
Confidence            9998        8888888886655 889999999999999666788999999999999999999999988876778888


Q ss_pred             ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEec-CCCcCCCCeEEEEeecChHHHHHHHHHHHH
Q 042445          172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLP-GITVGLKDWLRITFAVEPSALENGLGRMKA  237 (246)
Q Consensus       172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p-g~~f~~~~~iRls~~~~~~~l~~~~~~l~~  237 (246)
                      ++|+.+++....- +  -+.....+.+.+.||.|+- |+--++.|++|++++.+++. .-.++.|++
T Consensus       311 aNFiLi~v~~~~n-~--~akkly~q~at~~gVvVRfrgse~~c~G~lRitvGt~Een-tvL~k~~K~  373 (375)
T KOG0633|consen  311 ANFILIEVTGGDN-G--MAKKLYKQDATKMGVVVRFRGSEEGCKGYLRITVGTPEEN-TVLMKCLKQ  373 (375)
T ss_pred             ccEEEEEEcCCCc-H--HHHHHHHHHHHhcceEEEEcCCccccceeEEEEcCCcccc-hHHHHHHHh
Confidence            9999999874320 1  1566778888899999985 55555699999999975443 334444443

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=99.94  E-value=3.3e-25  Score=185.20  Aligned_cols=198  Identities=18%  Similarity=0.165  Sum_probs=151.1

Q ss_pred             CCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEee
Q 042445           15 FQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTS   94 (246)
Q Consensus        15 ~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~   94 (246)
                      +++||+|.+++.+++++|+++|+++|+++|+||+|..+..+..+..+....+  .+ ++++||||  +++|+|+||++++
T Consensus       143 tg~s~~G~v~~~~~L~~i~~la~~~~~~livDEAy~~~~~~~~~~~~~~~~~--~d-ivv~s~SK--alaG~r~G~v~~~  217 (346)
T TIGR03576       143 TGSTMDLKVVSEEDLKRVIKQAKSKEAIVLVDDASGARVRRLYGQPPALDLG--AD-LVVTSTDK--LMDGPRGGLLAGR  217 (346)
T ss_pred             ECCCCCCcccCHHHHHHHHHHHHHcCCEEEEECCccccccccCCCCCHHHcC--Cc-EEEeccch--hccccceEEEEeC
Confidence            5569999999999999999999999999999999998764311111222222  12 66779999  4789999999999


Q ss_pred             CCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCce
Q 042445           95 DPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSM  173 (246)
Q Consensus        95 ~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~  173 (246)
                      +        ++++.+..... +.++++++.|.++.++|+...   .+..++.++++++.+.+.++.+   . + .|++++
T Consensus       218 ~--------~li~~l~~~~~~~~~s~~~~~~~aa~~aL~~~~---~~~~~~~l~~r~~~~~~~l~~~---~-~-~~~~~~  281 (346)
T TIGR03576       218 K--------ELVDKIKSVGEQFGLEAQAPLLAAVVRALEEFE---LSRIRDAFKRKEEVYLRLFDKL---N-V-ERTPTG  281 (346)
T ss_pred             H--------HHHHHHHHhhcCcccCccHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHHHHHHHhC---C-C-CcCCCe
Confidence            8        99999988754 343578889999999997421   3566788888888888888753   2 2 234555


Q ss_pred             EEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC-CCeEEEEeecChH---HHHHHHHHHHHHH
Q 042445          174 FVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-KDWLRITFAVEPS---ALENGLGRMKAFY  239 (246)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~iRls~~~~~~---~l~~~~~~l~~~~  239 (246)
                      |+|++++..      ++.+++.++++++||.++||..|.. ++|+|+|++.+++   +.+..++.|++.+
T Consensus       282 f~~~~~~~~------~~~~~~~~ll~~~gV~v~~~~~f~~~~~~vRis~~~~~~~~~~~~~~~~al~~~~  345 (346)
T TIGR03576       282 FVIKGVEEE------KLIEIGLDLLRNYGIITITAVGMPGASKTLRFDLAAKDAERIGDDYLVEAVKDSL  345 (346)
T ss_pred             EEEEeCCCC------CHHHHHHHHHHhCCEEEeCCcccCCCCCeEEEEEecChHHhcCHHHHHHHHHhcc
Confidence            899888632      2568889999999999999988853 8899999997664   6777777776543

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=99.93  E-value=4.2e-24  Score=182.56  Aligned_cols=213  Identities=14%  Similarity=0.171  Sum_probs=148.9

Q ss_pred             hhhhhhccc----cccCCcCCCc-cCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            3 LINQDITRE----FSDFQVFHVG-SGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         3 ~~~~~~~~~----~~~~p~NPtG-~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      .+++.+.++    +++.++||+| .+++.+++++|.++|++||+++|+||+|.++.+.+.. .+....+...+   +.||
T Consensus       174 ~l~~~i~~~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~-~~~~~~~~~pd---i~t~  249 (396)
T PRK02627        174 ALKAAITDKTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKL-FAYQHYGIEPD---IMTL  249 (396)
T ss_pred             HHHHhcCCCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCce-eeehhcCCCCC---EEEE
Confidence            344444433    6666689999 6889999999999999999999999999988766532 22222222222   3479


Q ss_pred             ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHH
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADKCCD  155 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~  155 (246)
                      ||.++ +|+|+||+++++        ++++.+... ...+++.|++.|+++.++++... +.+.++.++.....++.+.+
T Consensus       250 sK~~~-~G~rig~~~~~~--------~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~~~~~l~~  320 (396)
T PRK02627        250 AKGLG-GGVPIGAVLAKE--------KVADVFTPGDHGSTFGGNPLACAAALAVIEIIEEEGLLENAAEVGEYLRAKLRE  320 (396)
T ss_pred             cchhh-CCcccEEEEEcH--------HHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence            99987 899999999998        888877643 33345789999999999998533 23344444444444444444


Q ss_pred             HhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHH
Q 042445          156 RLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLG  233 (246)
Q Consensus       156 ~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~  233 (246)
                      .+.+.+.+..  .+..|.++|++++.       +..+++.. +.++||.+.|+.    .+++|++++  .++++++++++
T Consensus       321 ~~~~~~~~~~--~~~~g~~~~i~~~~-------~~~~~~~~-l~~~Gv~v~~~~----~~~lRi~~~~~~~~~~i~~~~~  386 (396)
T PRK02627        321 LLEKYPGIKE--VRGLGLMIGIELDR-------PAAEIVKK-ALEKGLLINVTG----DNVLRLLPPLIISKEEIDEAVD  386 (396)
T ss_pred             HHHhCCCeee--eccCcEEEEEEecC-------cHHHHHHH-HHHCCeEEeecC----CCEEEEECCcccCHHHHHHHHH
Confidence            4444433332  23458889988732       24555554 556799999965    478999875  48999999999


Q ss_pred             HHHHHHHHH
Q 042445          234 RMKAFYDRH  242 (246)
Q Consensus       234 ~l~~~~~~~  242 (246)
                      +|.++++++
T Consensus       387 ~l~~~l~~~  395 (396)
T PRK02627        387 RLEEVLKEL  395 (396)
T ss_pred             HHHHHHHhh
Confidence            999998754

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=99.92  E-value=5.9e-24  Score=181.91  Aligned_cols=215  Identities=15%  Similarity=0.198  Sum_probs=156.3

Q ss_pred             hhhhhhccc---cccCCcCCCccCC--ChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            3 LINQDITRE---FSDFQVFHVGSGF--SGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         3 ~~~~~~~~~---~~~~p~NPtG~~~--~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      .+++.+.++   ++.+|.||+|-++  +.+++++|.++|++||+++|+||+|.++.+++..+ +....+..   .-+.||
T Consensus       176 ~l~~~l~~~~aaiiiep~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~-~~~~~~~~---pdi~s~  251 (403)
T PRK05093        176 AVKAVIDDHTCAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLF-AYMHYGVT---PDILTS  251 (403)
T ss_pred             HHHHHhcCCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccch-hhhhcCCC---CCEEEe
Confidence            444445433   6666989998875  88999999999999999999999999887776432 22122111   115689


Q ss_pred             ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDR  156 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  156 (246)
                      ||.++ +|+|+||+++++        ++++.+... ...+++.+++.|.++.+.|+...   -.+..+.++++++.+.+.
T Consensus       252 sK~l~-~G~rig~vv~~~--------~i~~~l~~~~~~~t~~~~~~~~~aa~a~L~~~~---~~~~~~~~~~~~~~l~~~  319 (403)
T PRK05093        252 AKALG-GGFPIGAMLTTA--------EIASHFKVGTHGSTYGGNPLACAVAEAVFDIIN---TPEVLEGVKARRQRFVDG  319 (403)
T ss_pred             ccccc-CCcceEEEEEcH--------HHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHh---hccHHHHHHHHHHHHHHH
Confidence            99987 899999999998        888888653 44455789999999999886321   234557788899999999


Q ss_pred             hhcCC---CCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHH
Q 042445          157 LKEIP---CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENG  231 (246)
Q Consensus       157 L~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~  231 (246)
                      |+++.   ++. ...+.+|+++|+.++...   ..++.+++. .+.++||.+.|+.    .+++|++++  .++++++++
T Consensus       320 L~~~~~~~~~~-~~~~~~G~~~~~~l~~~~---~~~~~~~~~-~l~~~Gv~v~~~g----~~~lRl~~~~~~~~~~i~~~  390 (403)
T PRK05093        320 LQKINQKYGVF-SEIRGMGLLIGAELKPQY---KGRARDFLN-AAAEEGVMVLVAG----PDVLRFAPSLVIEEADIDEG  390 (403)
T ss_pred             HHHHHhhCCCe-EeEeeCceEEEEEecCcc---hhHHHHHHH-HHHHCCeEEecCC----CCEEEEeCCCCCCHHHHHHH
Confidence            98752   221 234467899998886421   001445554 5567899998853    589999766  389999999


Q ss_pred             HHHHHHHHHHH
Q 042445          232 LGRMKAFYDRH  242 (246)
Q Consensus       232 ~~~l~~~~~~~  242 (246)
                      +++|.+++.+.
T Consensus       391 ~~~l~~~l~~~  401 (403)
T PRK05093        391 LARFEKAVAKV  401 (403)
T ss_pred             HHHHHHHHHHh
Confidence            99999998653

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=99.91  E-value=3.4e-23  Score=176.52  Aligned_cols=210  Identities=10%  Similarity=0.127  Sum_probs=143.0

Q ss_pred             hhhhhhccc----cccCCcCCCc-cCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            3 LINQDITRE----FSDFQVFHVG-SGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         3 ~~~~~~~~~----~~~~p~NPtG-~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      .+++.++++    +++.++||+| .++|.+++++|.++|++||+++|+||+|.++.+.+..+ +....+-...   +.|+
T Consensus       167 ~l~~~l~~~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~-~~~~~~~~pd---i~t~  242 (389)
T PRK01278        167 ALKAAITPNTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLF-AHEWAGVTPD---IMAV  242 (389)
T ss_pred             HHHHhhCCCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcce-eecccCCCCC---EEEE
Confidence            444545433    4544467778 78999999999999999999999999999887666432 2111111111   4589


Q ss_pred             ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhch----HHHHHHHHHHHHHHHHH
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTE----EEFFSKIIDILRETADK  152 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~----~~~~~~~~~~~~~~~~~  152 (246)
                      ||.++ +|+|+||+++++        ++++.+... ...+++.|++.|+++.+.|+...    .+++.+..+.++++.+.
T Consensus       243 sK~l~-~G~~ig~~~~~~--------~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~l~~  313 (389)
T PRK01278        243 AKGIG-GGFPLGACLATE--------EAAKGMTPGTHGSTYGGNPLAMAVGNAVLDVILAPGFLDNVQRMGLYLKQKLEG  313 (389)
T ss_pred             ehhcc-CCcceEEEEEcH--------HHHhccCCCCCCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            99986 899999999998        888877654 33455789999999988886421    12333344444444333


Q ss_pred             HHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHH
Q 042445          153 CCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEN  230 (246)
Q Consensus       153 l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~  230 (246)
                      +.   ++.+++...+.+ .|.++++++..       ++.+++.. |.++||.+.|+.    .+++||+++  .+++++++
T Consensus       314 l~---~~~~~~~~~v~g-~G~~~~i~~~~-------~~~~~~~~-l~~~GV~~~p~~----~~~lR~~p~~~~~~~~i~~  377 (389)
T PRK01278        314 LV---DRFPDVIEEVRG-KGLLLGLKCVV-------PNRDLVQA-LRDEGLLTVGAG----DNVVRLLPPLIITEEEIDE  377 (389)
T ss_pred             HH---hhCCCceeeEec-ccEEEEEEEec-------CHHHHHHH-HHHCCeEEeecC----CCEEEEeCCcccCHHHHHH
Confidence            32   223323212333 57788877743       24556555 446699999974    689999975  48999999


Q ss_pred             HHHHHHHHHHH
Q 042445          231 GLGRMKAFYDR  241 (246)
Q Consensus       231 ~~~~l~~~~~~  241 (246)
                      ++++|.+++++
T Consensus       378 ~l~~l~~~l~~  388 (389)
T PRK01278        378 ALERLERAAES  388 (389)
T ss_pred             HHHHHHHHHHh
Confidence            99999998865

>PLN02822 serine palmitoyltransferase

Probab=99.91  E-value=1.4e-22  Score=176.25  Aligned_cols=214  Identities=14%  Similarity=0.119  Sum_probs=158.9

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCC--CCccccccCCcccEEEEcccccccccCCceEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNT--PFVSMGVFGSIVPLLTLGSISKRGIVPGLRLG   89 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G   89 (246)
                      +++.++||+|.+.+   +++|.++|++||+++|+||+|+.+.++..  +......+...+..++++||||.|+++|   |
T Consensus       250 vve~i~~~~G~i~~---L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~dii~~s~sKalg~~G---G  323 (481)
T PLN02822        250 VVEAIYQNSGQIAP---LDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHALATEG---G  323 (481)
T ss_pred             EEecCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCCCCChHHHcCCCCCCCeEEEecchhhhhhCC---e
Confidence            66778899999999   89999999999999999999997777632  2212222222345689999999999999   9


Q ss_pred             EEEeeCCCCCcchhhHHHHHHHH-hhhcCCC--CchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccc
Q 042445           90 WLVTSDPNGILQDSGIVDSIKIF-LNISSDP--ATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCP  166 (246)
Q Consensus        90 ~i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~  166 (246)
                      |+++++        ++++.++.. ...+++.  ++..+.++..+|+.. +. ..+.++.++++++.+.+.|++.+|+. +
T Consensus       324 ~i~g~~--------~ii~~~~~~~~~~~fsa~lPp~~~~Aa~~aL~~l-~~-~~~~~~~l~~~~~~l~~~L~~~~g~~-~  392 (481)
T PLN02822        324 FCTGSA--------RVVDHQRLSSSGYVFSASLPPYLASAAITAIDVL-ED-NPSVLAKLKENIALLHKGLSDIPGLS-I  392 (481)
T ss_pred             EEEcCH--------HHHHHHHhcCCceeeccccCHHHHHHHHHHHHHH-Hh-CHHHHHHHHHHHHHHHHHHHhcCCcc-c
Confidence            999988        889888754 3333343  477778887788632 22 25678889999999999999876776 4


Q ss_pred             cCCCCceEEEEEeccccccCCCC----hHHHHHHHHHhcCeEEecCCC--cCC---CCeEEEEee--cChHHHHHHHHHH
Q 042445          167 KKPEGSMFVMVKLNYSLLEGINS----DMEFALKLAKEESVIVLPGIT--VGL---KDWLRITFA--VEPSALENGLGRM  235 (246)
Q Consensus       167 ~~~~~g~~~~~~~~~~~~~~~~~----~~~~~~~ll~~~gi~v~pg~~--f~~---~~~iRls~~--~~~~~l~~~~~~l  235 (246)
                      ..+.+++++++.++... ....+    ..+++..++.++||.+.|+.+  |+.   +.++|++++  .+++++++++++|
T Consensus       393 ~~~~~spi~~l~l~~~~-~~~~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~~~~~lRi~is~~~t~edI~~~~~~l  471 (481)
T PLN02822        393 GSNTLSPIVFLHLEKST-GSAKEDLSLLEHIADRMLKEDSVLVVVSKRSTLDKCRLPVGIRLFVSAGHTESDILKASESL  471 (481)
T ss_pred             CCCCCCCEEEEEeCCCc-ccccchHHHHHHHHHHHHhcCCEEEEeeCCCCcCCCCCCCcEEEEECCCCCHHHHHHHHHHH
Confidence            56778999999886420 00001    245666667789999998643  322   457999988  4999999999999


Q ss_pred             HHHHHHHh
Q 042445          236 KAFYDRHA  243 (246)
Q Consensus       236 ~~~~~~~~  243 (246)
                      ++++.+..
T Consensus       472 ~~~~~~~~  479 (481)
T PLN02822        472 KRVAASVL  479 (481)
T ss_pred             HHHHHHHh
Confidence            99988754

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=99.91  E-value=5.5e-23  Score=174.73  Aligned_cols=199  Identities=14%  Similarity=0.144  Sum_probs=140.4

Q ss_pred             cccCCcCCCccC-CChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSG-FSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~-~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      +++.++||+|.. ++.+++++|.++|+++|+++|+||+|.++.+.+.. .+....+...++   .+|||.++ +|+|+||
T Consensus       175 ~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~~-~~~~~~~~~~d~---~t~sK~~~-~G~riG~  249 (379)
T TIGR00707       175 IVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKF-FAYEHYGIEPDI---ITLAKGLG-GGVPIGA  249 (379)
T ss_pred             EEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchh-hhHHhcCCCCCE---EEEccccc-CCcccEE
Confidence            554445566653 68999999999999999999999999987665532 222222222233   36899998 9999999


Q ss_pred             EEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCC-CCccccC
Q 042445           91 LVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIP-CITCPKK  168 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~  168 (246)
                      +++++        ++++.+... ....++.+++.|.++.++|+...   ..+.++.++++++.+.+.|+++. .......
T Consensus       250 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~aa~aaL~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  318 (379)
T TIGR00707       250 TLAKE--------EVAEAFTPGDHGSTFGGNPLACAAALAVLEVIE---KERLLENVKEKGDYFKERLEELGKNYPNKEV  318 (379)
T ss_pred             EEEcH--------HHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHHHHHHHhhCCCCcc
Confidence            99988        888888764 33344789999999998887321   12355566677777777776531 1110112


Q ss_pred             CCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHH
Q 042445          169 PEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAF  238 (246)
Q Consensus       169 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~  238 (246)
                      +..|+++|++++.        +...+.+.|.++||.+.|+.    .+++|++++  .+++++++++++|+++
T Consensus       319 ~~~g~~~~~~~~~--------~~~~~~~~l~~~Gv~v~~~~----~~~lRi~~~~~~t~~~i~~~~~~l~~~  378 (379)
T TIGR00707       319 RGKGLMLGIELEA--------PCKDIVKKALEKGLLVNCAG----PKVLRFLPPLIITKEEIDEAVSALEEA  378 (379)
T ss_pred             ccCceEEEEEecC--------cHHHHHHHHHHCCcEEeeCC----CCEEEEECCCcCCHHHHHHHHHHHHHh
Confidence            3468888887753        23444556888999999854    589999976  4899999999999875

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=99.91  E-value=9.7e-23  Score=174.88  Aligned_cols=207  Identities=14%  Similarity=0.118  Sum_probs=147.4

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCccc-EEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVP-LLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~-~i~~~s~sK~~~~~g~r~G~   90 (246)
                      ++++|+||||.+++   +++|.++|+++|+++|+||+|....++..+.......+..++ .++++||||.||++|   ||
T Consensus       183 ~i~~~~n~tG~~~~---l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~~div~~tlsK~~g~~G---G~  256 (410)
T PRK13392        183 AFESVYSMDGDIAP---IEAICDLADRYNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKAFGCLG---GY  256 (410)
T ss_pred             EEeCCCCCCccccc---HHHHHHHHHHcCCEEEEECCccccCcCCCCCchhhhccCCCCCcEEEEEChHhhhccc---ch
Confidence            88999999999988   888999999999999999999955543322111111111122 388899999999998   99


Q ss_pred             EEeeCCCCCcchhhHHHHHHHHhh---hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccc
Q 042445           91 LVTSDPNGILQDSGIVDSIKIFLN---ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPK  167 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~  167 (246)
                      +++++        ++++.++....   ++++.+++.+.++..+|+.  .......++.++++++.+.+.|+++ |+. +.
T Consensus       257 ~~~~~--------~~~~~l~~~~~~~~~s~~~~~~~~~a~~aaL~~--~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~  324 (410)
T PRK13392        257 IAASA--------DLIDFVRSFAPGFIFTTALPPAVAAGATAAIRH--LKTSQTERDAHQDRVAALKAKLNAN-GIP-VM  324 (410)
T ss_pred             hhcCH--------HHHHHHHHhCcchhccCcCCHHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHHHHHHHHc-CCC-CC
Confidence            99887        88888876643   2335667888888888873  2223455677899999999999887 665 33


Q ss_pred             CCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC---CCeEEEEee--cChHHHHHHHHHHHHHHHHH
Q 042445          168 KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFA--VEPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       168 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~iRls~~--~~~~~l~~~~~~l~~~~~~~  242 (246)
                      .++++ ++.+.++...     +..++...++.++||.+.++.....   .+++|+++.  .++++++.+++.|.+++++.
T Consensus       325 ~~~~~-~~~i~~~~~~-----~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~~lRis~~~~~t~edid~l~~aL~~~~~~~  398 (410)
T PRK13392        325 PSPSH-IVPVMVGDPT-----LCKAISDRLMSEHGIYIQPINYPTVPRGTERLRITPTPLHDDEDIDALVAALVAIWDRL  398 (410)
T ss_pred             CCCCC-EEEEEeCCHH-----HHHHHHHHHHHhCCEEEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHc
Confidence            44444 4444454221     1344555555688999998654332   478999997  38999999999999887653

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=99.91  E-value=6e-23  Score=175.32  Aligned_cols=209  Identities=18%  Similarity=0.173  Sum_probs=148.2

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCCh-hhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSG-SFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGS   76 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~-~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s   76 (246)
                      |.+++.+.++    +++.++||||.++++ +++++|.++|++||+++|+||+|.++..++..+ .....+..   ..+.+
T Consensus       177 ~~l~~~i~~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~-~~~~~~~~---pdi~~  252 (396)
T PRK04073        177 EALKAAITPNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLF-ACDWDNVT---PDMYI  252 (396)
T ss_pred             HHHHHhcccCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcHHH-HhhhcCCC---CCEEE
Confidence            3444445433    677778999999876 479999999999999999999999887655322 11112211   22446


Q ss_pred             cccccccCCceEEEEEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445           77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD  155 (246)
Q Consensus        77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  155 (246)
                      +||.++++|+|+||+++++        ++++.+... ...+++.+++++.++.+.|+...+.   ...+..+++++.+.+
T Consensus       253 ~sK~lg~gg~~ig~~~~~~--------~i~~~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~---~l~~~~~~~~~~l~~  321 (396)
T PRK04073        253 LGKALGGGVFPISCVAANR--------DILGVFTPGSHGSTFGGNPLACAVSIAALEVLEEE---KLPERSLELGEYFKE  321 (396)
T ss_pred             ecccccCCCCcceEEEEcH--------HHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHH
Confidence            8999999999999999998        888887643 3344578999999999999742222   233555667888888


Q ss_pred             HhhcC--CCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHH
Q 042445          156 RLKEI--PCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENG  231 (246)
Q Consensus       156 ~L~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~  231 (246)
                      .|+++  +.+. ...+ .|.|++++++.       ++.++ ...|.++||.+.+..    +++|||++.  .++++++++
T Consensus       322 ~L~~l~~~~i~-~~~~-~g~~~~~~~~~-------~~~~~-~~~l~~~Gv~~~~~~----~~~iRi~p~l~~t~e~i~~~  387 (396)
T PRK04073        322 QLKEIDNPMIK-EVRG-RGLFIGVELNE-------PARPY-CEALKEEGLLCKETH----ETVIRFAPPLVITKEELDWA  387 (396)
T ss_pred             HHHhhcCCccc-ceec-ceEEEEEEecc-------hHHHH-HHHHHHCCeEEecCC----CCEEEEECCcccCHHHHHHH
Confidence            88775  2232 2233 46778877753       14444 445668899998732    579999965  499999999


Q ss_pred             HHHHHHHH
Q 042445          232 LGRMKAFY  239 (246)
Q Consensus       232 ~~~l~~~~  239 (246)
                      +++|++++
T Consensus       388 ~~~l~~~l  395 (396)
T PRK04073        388 FEKIKAVL  395 (396)
T ss_pred             HHHHHHHh
Confidence            99998875

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=99.90  E-value=1.4e-22  Score=173.33  Aligned_cols=204  Identities=12%  Similarity=0.090  Sum_probs=148.9

Q ss_pred             cccCCcCCCccCCChh-hHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGS-FVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~-~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      +++.++||+|.+++++ ++++|.++|++||+++|+||+|.++...+..+ .....+-..+   +.+|||.++ +|+|+||
T Consensus       188 iiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~-~~~~~~~~pD---i~t~sK~l~-~G~~ig~  262 (398)
T PRK03244        188 FLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWF-AHQHDGVTPD---VVTLAKGLG-GGLPIGA  262 (398)
T ss_pred             EEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccchHH-hhhhhCCCCC---EEEEchhhh-CCcccEE
Confidence            6667789999998764 59999999999999999999999877665432 1111221122   347899987 8999999


Q ss_pred             EEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccc-cC
Q 042445           91 LVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCP-KK  168 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~  168 (246)
                      +++++        ++++.+... ...+++.|++.+.++.++|+...+   .+..+.++++.+.+.+.|++++ ...+ ..
T Consensus       263 ~~~~~--------~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~-~~~~~~v  330 (398)
T PRK03244        263 CLAFG--------PAADLLTPGLHGSTFGGNPVACAAALAVLDTIAS---EGLLENAERLGEQLRAGIEALG-HPLVDHV  330 (398)
T ss_pred             EEEcH--------HHHhhccCCCCcCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHhcC-CCceeeE
Confidence            99998        888877653 334558899999999999873221   2344556666777888887752 2101 12


Q ss_pred             CCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHHh
Q 042445          169 PEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       169 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~~  243 (246)
                      ...|+++|+.++..       ....+.+.+.++||.+.|..    .+.+|+++..  ++++++++++.|.+++++.+
T Consensus       331 ~g~g~~~~i~~~~~-------~~~~~~~~l~~~Gv~~~~~~----~~~iR~~p~~~~t~~~i~~~~~~l~~~l~~~~  396 (398)
T PRK03244        331 RGRGLLLGIVLTAP-------VAKAVEAAAREAGFLVNAVA----PDVIRLAPPLIITDAQVDAFVAALPAILDAAA  396 (398)
T ss_pred             eeccEEEEEEEecc-------HHHHHHHHHHHCCeEEeecC----CCEEEEECCCcCCHHHHHHHHHHHHHHHHhcc
Confidence            34789999988632       33445566778999998843    5889999774  89999999999999998754

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=99.90  E-value=1.4e-22  Score=174.34  Aligned_cols=214  Identities=18%  Similarity=0.129  Sum_probs=154.8

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      +-..++||++..++.+++++|.++|++||+++|+||+|.++.+.+..+ +....   +.++.+.||||.++ +|+|+||+
T Consensus       205 ~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g~~~-~~~~~---~~~pdi~s~sK~l~-~G~rig~v  279 (425)
T PRK08088        205 IEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGTLF-AMEQM---GVAADLTTFAKSIA-GGFPLAGV  279 (425)
T ss_pred             ECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchh-HHhhc---CCCCCEEEEecccc-CCCcceee
Confidence            334557888889999999999999999999999999999876654322 21111   23345899999975 89999999


Q ss_pred             EeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445           92 VTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADKCCDRLKEIPCITCPKKP  169 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~  169 (246)
                      ++++        ++++.+... ...+++.+++.|.++..+|+... ++++++.++..++.++.+.+.+++.|.+.. +.+
T Consensus       280 ~~~~--------~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-v~g  350 (425)
T PRK08088        280 TGRA--------EVMDAIAPGGLGGTYAGNPIACAAALAVLKVFEQENLLQKANALGEKLKDGLLAIAEKHPEIGD-VRG  350 (425)
T ss_pred             EecH--------HHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEE-Eec
Confidence            9998        888888655 33455789999999999999754 466677776655555555555555654432 222


Q ss_pred             CCceEEEEEecccccc--CCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHH
Q 042445          170 EGSMFVMVKLNYSLLE--GINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       170 ~~g~~~~~~~~~~~~~--~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~  242 (246)
                      . |+++|+.+....-.  ........+...+.++||.+.|+..+  .+.+||+++.  +++++++++++|.+++++.
T Consensus       351 ~-G~~~~l~l~~~~~~~~p~~~~~~~l~~~~~~~Gv~~~~~~~~--~~~iRl~~~~~~t~~ei~~~i~~l~~~l~~~  424 (425)
T PRK08088        351 L-GAMIAIELFEDGDHSKPNAKLTAQIVARARDKGLILLSCGPY--YNVLRILVPLTIEDAQIRQGLEIIAQCFDEA  424 (425)
T ss_pred             c-ceEEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCEEecCCCC--CCEEEEECCCCcCHHHHHHHHHHHHHHHHhh
Confidence            2 89999998432100  00012445566677899998886544  5899999994  7999999999999998753

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=99.90  E-value=5e-22  Score=167.50  Aligned_cols=199  Identities=14%  Similarity=0.090  Sum_probs=145.2

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCC--ccccccCCcccEEEEcccccccccCCceEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPF--VSMGVFGSIVPLLTLGSISKRGIVPGLRLG   89 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~--~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G   89 (246)
                      +..+++||||...+   +++|.++|+++|+++|+||+|..+.++..+.  .+...+.+.+++|+++|+||.|+++|   |
T Consensus       151 ~~~~~~~~~G~~~~---~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~g---G  224 (360)
T TIGR00858       151 VTDGVFSMDGDIAP---LPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGSYG---A  224 (360)
T ss_pred             EEeCCccCCCCCcC---HHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEechhhhhccC---c
Confidence            56677899998766   7889999999999999999998766553222  22223334567899999999998887   9


Q ss_pred             EEEeeCCCCCcchhhHHHHHHHHhh-h--cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccc
Q 042445           90 WLVTSDPNGILQDSGIVDSIKIFLN-I--SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCP  166 (246)
Q Consensus        90 ~i~~~~~~~~~~~~~~~~~l~~~~~-~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~  166 (246)
                      |+++++        ++++.+..... .  +.+.++..+.++..+++.  .....+.++.++++++.+.+.|+++ ++.. 
T Consensus       225 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~--~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~-  292 (360)
T TIGR00858       225 YVAGSQ--------ALIDYLINRARTLIFSTALPPAVAAAALAALEL--IQEEPWRREKLLALIARLRAGLEAL-GFTL-  292 (360)
T ss_pred             EEEcCH--------HHHHHHHHhCccceecCCCCHHHHHHHHHHHHH--HhhCHHHHHHHHHHHHHHHHHHHHc-CCcc-
Confidence            999987        88888765422 1  223556655566666652  2234567889999999999999987 5553 


Q ss_pred             cCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC---CCeEEEEeec--ChHHHHHHHHHH
Q 042445          167 KKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFAV--EPSALENGLGRM  235 (246)
Q Consensus       167 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~iRls~~~--~~~~l~~~~~~l  235 (246)
                       .+.+++++|+.++...      +...+.+.|.++||.+.++..+..   .+++|++++.  +++++++++++|
T Consensus       293 -~~~~~~~~~~~~~~~~------~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~iRis~~~~~~~~~i~~~l~~l  359 (360)
T TIGR00858       293 -MPSCTPIVPVIIGDNA------SALALAEELQQQGIFVGAIRPPTVPAGTSRLRLTLSAAHTPGDIDRLAEAL  359 (360)
T ss_pred             -CCCCCCEEEEEeCCHH------HHHHHHHHHHHCCeeEeeeCCCCCCCCCceEEEEEcCCCCHHHHHHHHHhh
Confidence             3567888998876421      233445556788999998766532   4689999995  889999998876

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]

Probab=99.89  E-value=3.2e-22  Score=161.41  Aligned_cols=227  Identities=22%  Similarity=0.300  Sum_probs=173.9

Q ss_pred             hccc--cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCC-CCCccccc----cCC----cccEEEEcc
Q 042445            8 ITRE--FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGN-TPFVSMGV----FGS----IVPLLTLGS   76 (246)
Q Consensus         8 ~~~~--~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~-~~~~~~~~----~~~----~~~~i~~~s   76 (246)
                      +.++  ++-||+||||+++|++.+++|+.+|.++++.++.||+|.+-.|.+ ..|.+++.    ++.    ...++.++|
T Consensus       214 i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~~~~l~llaDEVYQ~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~SfhS  293 (475)
T KOG0258|consen  214 INPRALVVINPGNPTGQVLSEENIEGIICFAAEEGLVLLADEVYQDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHS  293 (475)
T ss_pred             CCceEEEEECCCCccchhhcHHHHHHHHHHHHHcCeEEechHHHHhhccCCCcchHhHHHHHHHhcCccCCceEEEeeec
Confidence            4444  788999999999999999999999999999999999999888875 35655533    221    224788999


Q ss_pred             ccccccc-CCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhch---------HHHHHHHHHHH
Q 042445           77 ISKRGIV-PGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTE---------EEFFSKIIDIL  146 (246)
Q Consensus        77 ~sK~~~~-~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~---------~~~~~~~~~~~  146 (246)
                      .||.+.+ .|.|-||+-.-+-.     ++....+.+......+.+..+|......++.+.         ........+.+
T Consensus       294 vSKGy~gECG~RGGYmEv~n~~-----prv~~qi~Kl~si~lc~~V~GQ~~vdl~VnPP~Pgd~Sy~~~~~Ekd~il~~l  368 (475)
T KOG0258|consen  294 VSKGYMGECGQRGGYMESLNRD-----PRVKQQIKKLASIKLCPQVSGQKLVDLVVNPPKPGDPSYDLFSSEKDGILSSL  368 (475)
T ss_pred             ccccceeeecccCCeeecccCC-----hhHHHHHHHHHhhhhcCCccchhhhceecCCCCCCCcchhhhhhhhHhHHHHH
Confidence            9999866 88999998664411     155555655555444777888888877777432         23456677788


Q ss_pred             HHHHHHHHHHhhcCCCCccccCCCCceEEEEEecccc--c-----cCCCChHHHHHHHHHhcCeEEecCCCcCC---CCe
Q 042445          147 RETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSL--L-----EGINSDMEFALKLAKEESVIVLPGITVGL---KDW  216 (246)
Q Consensus       147 ~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~--~-----~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~  216 (246)
                      +++++.+.+.+++++|+.+ .+++|+||++.++..+.  +     .++..++-.+.+||++.||.++||++|+.   +-+
T Consensus       369 ~~ra~l~~~~~ns~~gi~c-n~~qGAMY~fP~i~lP~kaie~A~~~~~~PD~FYc~~LLe~tGIcvVPGSGFGQ~~GtyH  447 (475)
T KOG0258|consen  369 RSRAKLTEDAFNSLEGISC-NPVQGAMYLFPQISLPPKAIEAAKALGIAPDEFYCLKLLEATGICVVPGSGFGQKEGTYH  447 (475)
T ss_pred             HHHhHHHHHHHhhcCceee-ccCccceeecccccCCHHHHHHHHHhCCCCcHHHHHHHHHhcCeEEecCCCCCCCCceeE
Confidence            8999999999999999995 89999999998765321  1     24445777899999999999999999998   467


Q ss_pred             EEEEeecChHHHHHHHHHHHHHHHHHh
Q 042445          217 LRITFAVEPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       217 iRls~~~~~~~l~~~~~~l~~~~~~~~  243 (246)
                      +|.++....  + +.+++++++-.++.
T Consensus       448 ~R~TiLp~~--~-~~i~~~~~fH~~f~  471 (475)
T KOG0258|consen  448 FRTTILPPG--L-EIIEKFKKFHAEFM  471 (475)
T ss_pred             EEEeecCch--h-HHHHHHHHHHHHHH
Confidence            999988644  4 77888887766654

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=99.89  E-value=5e-22  Score=168.72  Aligned_cols=198  Identities=15%  Similarity=0.225  Sum_probs=142.4

Q ss_pred             cccCCcCCCccC-CChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSG-FSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~-~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      ++..+++++|.. .+++++++|.++|++||+++|+||+|.++.+.+..+ +....+....   +.++||.++ +|+|+||
T Consensus       172 i~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~-~~~~~~~~~d---i~t~sK~l~-~G~~ig~  246 (377)
T PRK02936        172 MLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLF-AYEQFGLDPD---IVTVAKGLG-NGIPVGA  246 (377)
T ss_pred             EEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhh-HHHhhCCCCc---EEEEccccc-CCCccEE
Confidence            555556888876 578999999999999999999999999887766432 2222222222   347999987 8999999


Q ss_pred             EEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc----CCCCcc
Q 042445           91 LVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKE----IPCITC  165 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~  165 (246)
                      +++++        ++.+.+... ...+++.|++.|.++.++|+....   +...+.++++.+.+.+.|++    ++.+..
T Consensus       247 v~~~~--------~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~  315 (377)
T PRK02936        247 MIGKK--------ELGTAFGPGSHGSTFGGNPLAMAAAKEVLQVIKQ---PSFLEEVQEKGEYFLQKLQEELEHLECVKN  315 (377)
T ss_pred             EEEcH--------HHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhhCCcEEe
Confidence            99988        888877644 334447899999999999985321   23334555666666666654    332221


Q ss_pred             ccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHHH
Q 042445          166 PKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAFY  239 (246)
Q Consensus       166 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~  239 (246)
                       +. ..|+++|++++.        +.+.+...+.++||.+.|+.    .+++||++.  .+++++++++++|.+++
T Consensus       316 -v~-~~g~~~~i~~~~--------~~~~~~~~l~~~gv~v~~~g----~~~lRi~p~~~~~~~~i~~~i~~l~~~~  377 (377)
T PRK02936        316 -IR-GKGLMIGIECTE--------EVAPVIEQLREEGLLVLSAG----PNVIRLLPPLVVTKEELDQAVYLLKKVL  377 (377)
T ss_pred             -Ee-ecceEEEEEecc--------hHHHHHHHHHHCCeEEecCC----CCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence             22 357889988863        24455667889999998854    589999964  58999999999998763

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=99.88  E-value=1.3e-21  Score=168.96  Aligned_cols=221  Identities=17%  Similarity=0.124  Sum_probs=156.0

Q ss_pred             hhhhhhhcc----c----cccCCcCCCc-cCCChhhHHHHHHHHHHcCCEEEEccccC--CcccCC-----CCCcccccc
Q 042445            2 ELINQDITR----E----FSDFQVFHVG-SGFSGSFVSPIAETAKKLGIMVIANEVYG--HLAFGN-----TPFVSMGVF   65 (246)
Q Consensus         2 e~~~~~~~~----~----~~~~p~NPtG-~~~~~~~~~~l~~~~~~~~~~ii~De~y~--~~~~~~-----~~~~~~~~~   65 (246)
                      |.+++.+++    +    ++++|||||| .++|.+++++|.++|++||+++|+|+++.  ...|..     ....++..+
T Consensus       164 e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i  243 (460)
T PRK13238        164 EKLEALIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEI  243 (460)
T ss_pred             HHHHHHHhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHH
Confidence            456666662    2    8999999998 99999999999999999999999999663  233321     111222211


Q ss_pred             CCcccEEEEcccccccccCCceE-----E-EEEeeCCCCCcchhhHHHHHHHHh----hh-cCCC-CchHHHHHHHHHhh
Q 042445           66 GSIVPLLTLGSISKRGIVPGLRL-----G-WLVTSDPNGILQDSGIVDSIKIFL----NI-SSDP-ATFIQGAVPQILEK  133 (246)
Q Consensus        66 ~~~~~~i~~~s~sK~~~~~g~r~-----G-~i~~~~~~~~~~~~~~~~~l~~~~----~~-~~~~-~~~~q~~~~~~l~~  133 (246)
                           +..++|++|.+.++|+|+     | ++++++.       ++.++++...    ++ +++. +...|.|++..|.+
T Consensus       244 -----~~~~~s~~D~~~~Sg~K~g~~~~GG~i~~~d~-------~l~~~~~~~~~~~~g~~t~~g~~~~~~~Ala~~l~e  311 (460)
T PRK13238        244 -----AREMFSYADGLTMSAKKDAMVNIGGLLCFRDE-------DLFTECRTLCILYEGFPTYGGLAGRDMEALAVGLYE  311 (460)
T ss_pred             -----hhhhcccCcEEEEecccCCCCcceeEEEcChH-------HHHHHhhhcccccCCcccccCcHHHHHHHHHhhHHH
Confidence                 234567777777777775     3 4455532       7888877653    22 3344 44458888877764


Q ss_pred             ch-HHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEecccc--cc--CCCChHHHHHHHHHhcCeEEecC
Q 042445          134 TE-EEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSL--LE--GINSDMEFALKLAKEESVIVLPG  208 (246)
Q Consensus       134 ~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~--~~--~~~~~~~~~~~ll~~~gi~v~pg  208 (246)
                      .. +.++....+    +++.+.+.|++. |+. +..|.||+|+++++..-.  ++  +. .+.+++.+++++.||.+.|+
T Consensus       312 ~~~~~~~~~~~~----~~~~l~~~L~~~-G~~-~~~p~Gg~~v~~d~~~~~~~~~~~~~-~~~~~a~~L~~e~GV~~~~~  384 (460)
T PRK13238        312 GMDEDYLAYRIG----QVEYLGEGLEEA-GVP-IQTPAGGHAVFVDAGKFLPHIPAEQF-PAQALACELYLEAGIRGVEI  384 (460)
T ss_pred             hhChHHHHHHHH----HHHHHHHHHHHC-CCC-eEccCCceEEEEEchhcCCCCCCCCC-chHHHHHHHHHHcCeeeecc
Confidence            32 344444433    578899999886 777 578999999999885320  10  11 36789999999999999998


Q ss_pred             CCcCC-------------CCeEEEEeec---ChHHHHHHHHHHHHHHHH
Q 042445          209 ITVGL-------------KDWLRITFAV---EPSALENGLGRMKAFYDR  241 (246)
Q Consensus       209 ~~f~~-------------~~~iRls~~~---~~~~l~~~~~~l~~~~~~  241 (246)
                      +.|..             .+.+||++..   +++.++.++++|....++
T Consensus       385 ~~f~~~~~~~~~~~~~~~~~~~Rla~~rr~~~~~~~~~~~~~l~~~~~~  433 (460)
T PRK13238        385 GSLLLGRDPKTGEQLPAPAELLRLAIPRRVYTQSHMDYVAEALKAVKEN  433 (460)
T ss_pred             cceecccCCCCccccCCccceEEEecccccCCHHHHHHHHHHHHHHHHh
Confidence            87753             3789999996   999999999999987643

>PRK09064 5-aminolevulinate synthase; Validated

Probab=99.88  E-value=5.7e-21  Score=163.83  Aligned_cols=207  Identities=17%  Similarity=0.095  Sum_probs=146.1

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      ++++++||+|.+.+   +++|.++|++||+++|+||+|+...++..+.......+. .+..++++||||.||++|   ||
T Consensus       183 ~~~~v~s~~G~~~~---l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~G---G~  256 (407)
T PRK09064        183 AFESVYSMDGDIAP---IAEICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEGTLAKAFGVMG---GY  256 (407)
T ss_pred             EEeCCCCCCccccC---HHHHHHHHHHcCCEEEEECCCcccccCCCCCChHHhcCCCCCCeEEEEecchhhhccC---ce
Confidence            88889999999887   889999999999999999999854443222111111121 234688999999999988   99


Q ss_pred             EEeeCCCCCcchhhHHHHHHHHhh---hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccc
Q 042445           91 LVTSDPNGILQDSGIVDSIKIFLN---ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPK  167 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~  167 (246)
                      +++++        ++++.+.....   ++++.++..+.++.+.++...  .....++.++++++.+.+.|+++ |+.. .
T Consensus       257 ~~~~~--------~~~~~l~~~~~~~~~t~~~~~~~~~aa~~al~~~~--~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~  324 (407)
T PRK09064        257 IAGSA--------ALVDAVRSYAPGFIFTTSLPPAIAAAALASIRHLK--ESNEERERHQERAAKLKAALDAA-GIPV-M  324 (407)
T ss_pred             EecCH--------HHHHHHHHhCccccccCcCCHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHc-CCCC-C
Confidence            99988        88888876532   233567777777777776321  12344677889999999999886 5653 3


Q ss_pred             CCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC---CCeEEEEeec--ChHHHHHHHHHHHHHHHHH
Q 042445          168 KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFAV--EPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       168 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~iRls~~~--~~~~l~~~~~~l~~~~~~~  242 (246)
                      . ..+.++++.++...     ...++...++.++||.+.+...+..   .+++|++++.  ++++++++++.|++++++.
T Consensus       325 ~-~~~~iv~i~~~~~~-----~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis~~~~~t~edi~~l~~~l~~~~~~~  398 (407)
T PRK09064        325 P-NESHIVPVMVGDPE-----KCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPTPFHTDEMIDHLVEALVEVWARL  398 (407)
T ss_pred             C-CCCCEEEEEeCCHH-----HHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Confidence            3 34566666664311     1345555555677999998654432   3689999984  8999999999999988754

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=99.88  E-value=2.6e-21  Score=165.69  Aligned_cols=218  Identities=14%  Similarity=0.147  Sum_probs=157.0

Q ss_pred             hhhhhhccc---cccCCcCCCccCC--ChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            3 LINQDITRE---FSDFQVFHVGSGF--SGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         3 ~~~~~~~~~---~~~~p~NPtG~~~--~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      .+++.+..+   ++..|.||+|-++  +.+++++|.++|++||+++|+||+|.++.+.+..+ +....+-...   +.|+
T Consensus       175 ~l~~~l~~~~aaviiEPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~~-~~~~~~v~pD---i~t~  250 (406)
T PRK12381        175 SASALIDDQTCAVIVEPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELY-AYMHYGVTPD---VLTT  250 (406)
T ss_pred             HHHHhccCCeeEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcchh-hhHhhCCCCC---EEEe
Confidence            444445433   6668999998765  68999999999999999999999999887766432 2212221112   4589


Q ss_pred             ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDR  156 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  156 (246)
                      ||.++ +|+|+||+++++        ++++.+... ...+++.+++.+.++.+.|+...   ..+.++.++++.+.+.+.
T Consensus       251 sK~l~-gG~~ig~~~~~~--------~~~~~~~~~~~~~t~~~~pl~~aaa~a~l~~l~---~~~~~~~~~~~~~~l~~~  318 (406)
T PRK12381        251 AKALG-GGFPIGAMLTTE--------KCASVMTVGTHGTTYGGNPLASAVAGKVLELIN---TPEMLNGVKQRHDWFVER  318 (406)
T ss_pred             hhhhh-CCCceEEEEEcH--------HHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHh---hccHHHHHHHHHHHHHHH
Confidence            99976 789999999998        888887653 33455789999999999886421   234667778888888888


Q ss_pred             hhcCC-CCcccc-CCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHH
Q 042445          157 LKEIP-CITCPK-KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGL  232 (246)
Q Consensus       157 L~~~~-~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~  232 (246)
                      |+++. ....+. ....|.++++.++...    ......+...+.++||.+.+..    ++.+||+++  .+++++++++
T Consensus       319 L~~l~~~~~~~~~vrg~Gl~~~~~l~~~~----~~~~~~~~~~l~~~Gv~v~~~g----~~~lRl~p~~~~t~~~i~~~~  390 (406)
T PRK12381        319 LNTINARYGLFSEIRGLGLLIGCVLNAEY----AGKAKQISQEAAKAGVMVLIAG----PNVVRFAPALNISEEEITTGL  390 (406)
T ss_pred             HHHHHhhCCCEEEEecCeEEEEEEecCch----hhHHHHHHHHHHHCCcEEeeCC----CCEEEEeCCccCCHHHHHHHH
Confidence            87642 111111 2245788888776421    0134556677889999997642    579999987  4899999999


Q ss_pred             HHHHHHHHHHhh
Q 042445          233 GRMKAFYDRHAE  244 (246)
Q Consensus       233 ~~l~~~~~~~~~  244 (246)
                      ++|.++++++..
T Consensus       391 ~~l~~~l~~~~~  402 (406)
T PRK12381        391 DRFARACERFVS  402 (406)
T ss_pred             HHHHHHHHHHHh
Confidence            999999987653

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=99.88  E-value=6.3e-21  Score=163.30  Aligned_cols=207  Identities=16%  Similarity=0.130  Sum_probs=146.8

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      ++++|+||+|.+.+   +++|.++|++||+++|+||+|+...++..+.......+- .+..++++||||.|+++|   ||
T Consensus       182 ~~e~~~~~~G~~~~---l~~i~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~G---G~  255 (402)
T TIGR01821       182 AFESVYSMDGDIAP---IEEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAFGVVG---GY  255 (402)
T ss_pred             EEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEeCcccccccCCCCCccchhccCCCCCeEEEEechhhhccCC---ce
Confidence            78899999999988   889999999999999999999955444322111111111 123588899999999988   99


Q ss_pred             EEeeCCCCCcchhhHHHHHHHHhh---hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccc
Q 042445           91 LVTSDPNGILQDSGIVDSIKIFLN---ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPK  167 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~  167 (246)
                      +++++        ++++.+.....   ++++.++..+.++.++|+...+  ....++.++++++.+.+.|+++ |+. +.
T Consensus       256 i~~~~--------~~~~~l~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~--~~~~~~~~~~~~~~l~~~L~~~-g~~-~~  323 (402)
T TIGR01821       256 IAASR--------KLIDAIRSYAPGFIFTTSLPPAIAAGATASIRHLKE--SQDLRRAHQENVKRLKNLLEAL-GIP-VI  323 (402)
T ss_pred             eecCH--------HHHHHHHHhCcCceecCcCCHHHHHHHHHHHHHhhc--CHHHHHHHHHHHHHHHHHHHHc-CCC-cC
Confidence            99988        88888876532   2336788888888888873221  1445566678889999999887 565 33


Q ss_pred             CCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC---CCeEEEEeec--ChHHHHHHHHHHHHHHHHH
Q 042445          168 KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFAV--EPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       168 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~iRls~~~--~~~~l~~~~~~l~~~~~~~  242 (246)
                      .+. +.++.+.++...     ...++...++.++||.+.+..++..   .+++|+++..  ++++++++++.|+++++++
T Consensus       324 ~~~-~~i~~i~~~~~~-----~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis~~~~~t~edi~~~~~~l~~~~~~~  397 (402)
T TIGR01821       324 PNP-SHIVPVIIGDAA-----LCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRITPTPAHTDKMIDDLVEALLLVWDRL  397 (402)
T ss_pred             CCC-CCEEEEEeCCHH-----HHHHHHHHHHhcCCEEEEeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Confidence            444 455555554311     1344555555677999988654332   4789999974  8999999999999988764

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=99.88  E-value=5.1e-21  Score=162.85  Aligned_cols=202  Identities=11%  Similarity=0.088  Sum_probs=142.6

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccC--CCCCccccccCCcccEEEEcccccccccCCceEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFG--NTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLG   89 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~--~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G   89 (246)
                      +..+++||||...+   +++|.++|++||+++|+||+|..+.++  +..+.....+...++++++.|+||.|+++|   |
T Consensus       173 i~~~~~~~~G~~~~---l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G---g  246 (385)
T PRK05958        173 VTESVFSMDGDLAP---LAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKALGSSG---A  246 (385)
T ss_pred             EEEecccCCCCcCC---HHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEEechhhcccCC---c
Confidence            55567899998755   889999999999999999999866544  222222223344557899999999998888   9


Q ss_pred             EEEeeCCCCCcchhhHHHHHHHHh-hh--cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccc
Q 042445           90 WLVTSDPNGILQDSGIVDSIKIFL-NI--SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCP  166 (246)
Q Consensus        90 ~i~~~~~~~~~~~~~~~~~l~~~~-~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~  166 (246)
                      |+++++        ++.+.+.... ..  +.+.+++.+.++.++++.... . .+.++.+.++++.+.+.|+++ ++. +
T Consensus       247 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~-~-~~~~~~~~~~~~~l~~~L~~~-~~~-~  314 (385)
T PRK05958        247 AVLGSE--------TLIDYLINRARPFIFTTALPPAQAAAARAALRILRR-E-PERRERLAALIARLRAGLRAL-GFQ-L  314 (385)
T ss_pred             EEEcCH--------HHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhc-C-HHHHHHHHHHHHHHHHHHHHc-CCC-c
Confidence            999887        8887776442 21  224566666666666763211 1 566788899999999999887 555 3


Q ss_pred             cCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC---CCeEEEEee--cChHHHHHHHHHHHHH
Q 042445          167 KKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFA--VEPSALENGLGRMKAF  238 (246)
Q Consensus       167 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~iRls~~--~~~~~l~~~~~~l~~~  238 (246)
                      ..+ +|.++++.++...     ++.++ .+.|.++||.+.++..+..   ++++|++++  .+++++++++++|+++
T Consensus       315 ~~~-~~~~~~~~~~~~~-----~~~~~-~~~l~~~gI~v~~~~~~~~~~~~~~lRis~~~~~~~~~i~~~l~~l~~~  384 (385)
T PRK05958        315 MDS-QSAIQPLIVGDNE-----RALAL-AAALQEQGFWVGAIRPPTVPAGTSRLRITLTAAHTEADIDRLLEALAEA  384 (385)
T ss_pred             CCC-CCCEEEEEeCCHH-----HHHHH-HHHHHHCCceEecccCCCCCCCCceEEEEecCCCCHHHHHHHHHHHHhc
Confidence            444 4566777775421     23344 4456688999998554422   479999998  3899999999999775

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=99.88  E-value=3.1e-21  Score=163.71  Aligned_cols=199  Identities=13%  Similarity=0.159  Sum_probs=150.1

Q ss_pred             cccCCcCCCccCCC-hhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCcc-ccccCCcccEEEEcccccccccCCceEE
Q 042445           12 FSDFQVFHVGSGFS-GSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVS-MGVFGSIVPLLTLGSISKRGIVPGLRLG   89 (246)
Q Consensus        12 ~~~~p~NPtG~~~~-~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~-~~~~~~~~~~i~~~s~sK~~~~~g~r~G   89 (246)
                      ++..++|++|...+ .+.++++.++|+++|+++|+||+|.++...+..+.. ...+.+  +   +.||||.++ +|+|+|
T Consensus       170 i~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~~~~~~~~p--d---i~t~sK~l~-~G~~ig  243 (375)
T PRK04260        170 MLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGIEP--D---IFTLAKGLA-NGVPVG  243 (375)
T ss_pred             EECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhHhhCCCC--C---EEEeccccc-CCcceE
Confidence            66678899998754 578999999999999999999999987665543221 222332  2   448999974 789999


Q ss_pred             EEEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhhcCCCCcccc
Q 042445           90 WLVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADKCCDRLKEIPCITCPK  167 (246)
Q Consensus        90 ~i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~  167 (246)
                      |+++++        ++.+.+... ...+++.+++.+.++.++|+... +.++++.++..+..++.+.+.+.+.+.+..  
T Consensus       244 ~~~~~~--------~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--  313 (375)
T PRK04260        244 AMLAKS--------SLGGAFGYGSHGSTFGGNKLSMAAASATLDIMLTAGFLEQALENGNYLQEQLQKALQDKETVTT--  313 (375)
T ss_pred             EEEEcH--------HHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCeeE--
Confidence            999998        888777543 33345779999999999998654 467778788888888888887776643332  


Q ss_pred             CCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHH
Q 042445          168 KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAF  238 (246)
Q Consensus       168 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~  238 (246)
                      .+..|+++|+++..        +...+.+.+.++||.+.|+.    .+.+|+++..  +++++++++++|+++
T Consensus       314 ~~~~g~~~~~~~~~--------~~~~~~~~l~~~Gi~v~~~~----~~~lR~~~~~~~t~~~i~~~l~~l~~~  374 (375)
T PRK04260        314 VRGLGYMIGIETTA--------DLSQLVEAARDKGLIVLTAG----TNVIRLLPPLTLTKEEIEQGIAILSEV  374 (375)
T ss_pred             EeccceEEEEEecC--------cHHHHHHHHHhCCCEEecCC----CCEEEEcCCCccCHHHHHHHHHHHHHh
Confidence            23479999998842        23344566778999998753    5889999963  899999999999775

>PLN02483 serine palmitoyltransferase

Probab=99.88  E-value=1.4e-20  Score=164.12  Aligned_cols=202  Identities=14%  Similarity=0.082  Sum_probs=139.8

Q ss_pred             CCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCC--CCCccccccCCcccEEEEcccccccccCCceEEEEEeeC
Q 042445           18 FHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGN--TPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSD   95 (246)
Q Consensus        18 NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~--~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~   95 (246)
                      |++|.+.   ++++|+++|++||+++|+||+|+....+.  .+......+++.+..|+++||||.|+++|   ||+++++
T Consensus       251 s~~G~~~---~l~~I~~la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v~~~~~dI~~~SfSKs~g~~G---G~i~~~~  324 (489)
T PLN02483        251 SMEGELC---KLPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDPADVDIMMGTFTKSFGSCG---GYIAGSK  324 (489)
T ss_pred             CCCCccc---CHHHHHHHHHHcCCEEEEECcCccCccCCCCCchHHhcCCCcccCcEEEEecchhcccCc---eEEEcCH
Confidence            4555544   59999999999999999999998544432  22223333444556799999999999988   9999988


Q ss_pred             CCCCcchhhHHHHHHHHhh---hcCCCCchHHHHHHHHHh----hchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccC
Q 042445           96 PNGILQDSGIVDSIKIFLN---ISSDPATFIQGAVPQILE----KTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKK  168 (246)
Q Consensus        96 ~~~~~~~~~~~~~l~~~~~---~~~~~~~~~q~~~~~~l~----~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~  168 (246)
                              ++++.++....   .....++....++.+.|+    .....+..+.++.++++++.+.+.|+++ |+. +..
T Consensus       325 --------~li~~l~~~~~~~~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~~~-G~~-v~~  394 (489)
T PLN02483        325 --------ELIQYLKRTCPAHLYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQKM-GFE-VLG  394 (489)
T ss_pred             --------HHHHHHHHhCccccccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHC-CCc-ccC
Confidence                    99999987522   122334444444455553    1112344556788999999999999998 665 344


Q ss_pred             CCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC----CCeEEEEeec--ChHHHHHHHHHHHHHHHHH
Q 042445          169 PEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL----KDWLRITFAV--EPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       169 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----~~~iRls~~~--~~~~l~~~~~~l~~~~~~~  242 (246)
                      +.++..+++.+....     +..++... |.++||.+.| ..|+.    .+++|++++.  +++++++++++|.++++.+
T Consensus       395 ~~~sp~~~l~l~~~~-----~~~~~~~~-Ll~~GI~v~~-~~fp~~p~~~~~vRi~isa~~t~edId~~l~~L~~~~~~~  467 (489)
T PLN02483        395 DNDSPVMPIMLYNPA-----KIPAFSRE-CLKQNVAVVV-VGFPATPLLLARARICISASHSREDLIKALEVISEVGDLV  467 (489)
T ss_pred             CCCCCEEEEEECCHH-----HHHHHHHH-HHHCCcEEee-eCCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence            555667776554321     13345444 5578999997 44422    4789999985  8999999999999987654

>PLN00144 acetylornithine transaminase

Probab=99.87  E-value=5.6e-21  Score=162.08  Aligned_cols=196  Identities=13%  Similarity=0.126  Sum_probs=138.9

Q ss_pred             cCCCccCC-ChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCcc-ccccCCcccEEEEcccccccccCCceEEEEEee
Q 042445           17 VFHVGSGF-SGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVS-MGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTS   94 (246)
Q Consensus        17 ~NPtG~~~-~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~-~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~   94 (246)
                      +||.|... +.+.+++|.++|++||+++|+||+|.++...+..+.. ...+.++     +.||||.+ .+|+|+||++++
T Consensus       177 q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~PD-----i~t~sK~l-~~G~pig~v~~~  250 (382)
T PLN00144        177 QGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGVEPD-----IMTLAKPL-AGGLPIGAVLVT  250 (382)
T ss_pred             cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchHhhhhhcCCCCC-----EEEecccc-cCCcceEEEEEc
Confidence            47844432 3456999999999999999999999998777653321 3344443     88899996 678999999999


Q ss_pred             CCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhh---ch-HHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445           95 DPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEK---TE-EEFFSKIIDILRETADKCCDRLKEIPCITCPKKP  169 (246)
Q Consensus        95 ~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~---~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~  169 (246)
                      +        ++.+.+... ...+++.|++.+.++.+.|+.   +. ..++.+..+.+   ++.+.+.+++.|.+.. +. 
T Consensus       251 ~--------~~~~~~~~~~~~~T~~~~pl~~aaa~a~l~~i~~~~~~~~~~~~g~~l---~~~l~~~~~~~~~~~~-vr-  317 (382)
T PLN00144        251 E--------KVASAINPGDHGSTFAGGPLVCNAALAVLDKISKPGFLASVAKKGEYL---RELLRRKLGGNPHVKE-VR-  317 (382)
T ss_pred             H--------HHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhchHHHHHHHHHHHH---HHHHHHHHhhCCCcee-ee-
Confidence            8        888877543 334558899999999955542   22 23344444433   3444555555554432 22 


Q ss_pred             CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHH
Q 042445          170 EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       170 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~  242 (246)
                      ..|+++|+++..        ....+...+.++||.+.|+..   .+.+|++++.  +++++++++++|.+++.++
T Consensus       318 g~G~~~~l~l~~--------~~~~~~~~~~~~Gv~i~~~~~---~~~lrl~p~~~~~~~~i~~~~~~l~~~l~~~  381 (382)
T PLN00144        318 GVGLLVGIQLDV--------PAGPLVDACRDSGLLVLTAGK---GDVVRLVPPLVISEAELEQAVEILADCLPAL  381 (382)
T ss_pred             cCceEEEEEecC--------ccHHHHHHHHHCCeEEeecCC---CCEEEEeCCCccCHHHHHHHHHHHHHHHHhc
Confidence            379999999842        223345567799999998732   5899999885  8899999999999998764

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.87  E-value=8.4e-21  Score=160.73  Aligned_cols=205  Identities=12%  Similarity=0.034  Sum_probs=138.6

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      ++++|+||||...+   +++|.++|+++|+++|+||+|..+..+.    .....   +..++++|+||.|+ +|.|+||+
T Consensus       151 ~~~~p~~~~G~~~~---l~~i~~la~~~~~~livDea~~~g~~~~----~~~~~---~~di~v~s~sK~~~-~~g~~G~l  219 (370)
T TIGR02539       151 LLTHVDGEYGNLPD---AGKVAKVCREKGVPLLLNCAYTVGRMPV----SAKEI---GADFIVGSGHKSMA-ASGPCGVL  219 (370)
T ss_pred             EEECCCCCCccccC---HHHHHHHHHHcCCeEEEECccccCCcCC----CHHHc---CCCEEEeeCccccc-CCCCEEEE
Confidence            78899999999776   7788889999999999999999743211    11111   23367799999987 56689999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhhhc---------CCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLNIS---------SDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPC  162 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~  162 (246)
                      ++++        ++++.++.....+         .......+.++..++.. ...++++..+.++. ++.+.+.|+++ |
T Consensus       220 ~~~~--------~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~~~~l~~~~~~~~~-~~~l~~~L~~~-g  288 (370)
T TIGR02539       220 GMSE--------EWEDIVLRKSRYSPVKEVELLGCTSRGAPIVTMMASFPH-VVERVKRWDEEVKK-TRWFVAELEDI-G  288 (370)
T ss_pred             EECH--------HHHhhhcccccCCccceeeeecccccccHHHHHHHHHHH-HHHHHHHHHHHHHH-HHHHHHHHHhC-C
Confidence            9998        8888887764321         01111245555555542 14455555555444 45899999987 5


Q ss_pred             Cccc-cCCCCceEEEEEeccccc--cCCCChHHHHHHHHHhcCeE-EecCCCcCCCCeEEEEee-cChHHHHHHHHHHHH
Q 042445          163 ITCP-KKPEGSMFVMVKLNYSLL--EGINSDMEFALKLAKEESVI-VLPGITVGLKDWLRITFA-VEPSALENGLGRMKA  237 (246)
Q Consensus       163 ~~~~-~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~gi~-v~pg~~f~~~~~iRls~~-~~~~~l~~~~~~l~~  237 (246)
                      +..+ ..|+.++|++++++....  .+.......+.+.|.++||. ++++    .++++|+++. .++++++++++.|++
T Consensus       289 ~~~~~~~~s~t~~v~~~~~~~~~~~~~~~~~~~~~~~~L~e~GI~~ir~~----~~~~iRis~~~~t~e~i~~l~~~L~~  364 (370)
T TIGR02539       289 FIQLGQKPKEHDLVKFETPGFHEIAQKHKRRGYFLYEELKKRGIHGIRSG----QTKYFKLSVYGLTKEQVEYVVDSFEE  364 (370)
T ss_pred             cEEEccCCCcCceEEEECCchhHHhhhhccccHHHHHHHHhCCCccccCC----cceEEEEEecCCCHHHHHHHHHHHHH
Confidence            6532 356788999887752100  00001234567778889997 5543    3679999973 399999999999998


Q ss_pred             HHHHH
Q 042445          238 FYDRH  242 (246)
Q Consensus       238 ~~~~~  242 (246)
                      +++++
T Consensus       365 ~~~~~  369 (370)
T TIGR02539       365 IVEEY  369 (370)
T ss_pred             HHHhc
Confidence            87654

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=99.87  E-value=2.2e-20  Score=159.92  Aligned_cols=213  Identities=15%  Similarity=0.106  Sum_probs=148.9

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.++++    ++++||||||.+++   +++|.++|+++|+++|+|++|+...+.    ..+..+   +..+++.|+
T Consensus       151 ~~l~~~i~~~t~lv~i~~~~n~tG~~~~---~~~i~~l~~~~g~~~ivD~a~~~g~~~----~~~~~~---~~d~~~~s~  220 (401)
T PRK10874        151 DLLPELITPRTRILALGQMSNVTGGCPD---LARAITLAHQAGMVVMVDGAQGAVHFP----ADVQAL---DIDFYAFSG  220 (401)
T ss_pred             HHHHHhcCcCcEEEEEeCCcccccCcCC---HHHHHHHHHHcCCEEEEECCccccccc----CCchhc---CCCEEEEec
Confidence            4555666554    78999999999987   778999999999999999999743322    112222   233778999


Q ss_pred             ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHh---------------------hh-cCCCCchHHHHHHHHHhhch
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFL---------------------NI-SSDPATFIQGAVPQILEKTE  135 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~---------------------~~-~~~~~~~~q~~~~~~l~~~~  135 (246)
                      +|.||.+|  +||+++++        ++++.+....                     .+ ..+.+...+.++..+++...
T Consensus       221 ~K~~gp~G--~G~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~  290 (401)
T PRK10874        221 HKLYGPTG--IGVLYGKS--------ELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLA  290 (401)
T ss_pred             ccccCCCc--cEEEEEch--------HHHhcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHH
Confidence            99988777  59999887        7766653211                     01 11345556667777666322


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcC---
Q 042445          136 EEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG---  212 (246)
Q Consensus       136 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~---  212 (246)
                      +....+.+++.++.++.+.+.|++++++..+..+ .+.++++.++..      +. +.+.+.|.++||.+.+|..|.   
T Consensus       291 ~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~-~~~i~~~~~~~~------~~-~~~~~~L~~~gI~v~~g~~~~~~~  362 (401)
T PRK10874        291 DIDINQAESWSRSLATLAEDALAKLPGFRSFRCQ-DSSLLAFDFAGV------HH-SDLVTLLAEYGIALRAGQHCAQPL  362 (401)
T ss_pred             HhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCC-CCcEEEEEECCc------CH-HHHHHHHHHCCcEEeccccchHHH
Confidence            3334556777788888999999888887643333 444555556432      23 445567788999999988764   


Q ss_pred             -----CCCeEEEEeec--ChHHHHHHHHHHHHHHHHH
Q 042445          213 -----LKDWLRITFAV--EPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       213 -----~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~  242 (246)
                           ..+++|+|++.  ++++++.+++.|+++++++
T Consensus       363 ~~~~g~~~~iRiS~~~~nt~edid~ll~al~~~~~~~  399 (401)
T PRK10874        363 LAALGVTGTLRASFAPYNTQSDVDALVNAVDRALELL  399 (401)
T ss_pred             HHHhCCCCEEEEEecccCCHHHHHHHHHHHHHHHHHh
Confidence                 36899999995  8899999999999887653

>PRK07049 methionine gamma-lyase; Validated

Probab=99.87  E-value=2e-20  Score=160.55  Aligned_cols=137  Identities=11%  Similarity=0.071  Sum_probs=108.1

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHH---cCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccc-cCCce
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKK---LGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGI-VPGLR   87 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~---~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~g~r   87 (246)
                      ++++||||||.+++.+++.+|++.|..   +++++|+||+|.......    ++    .....++++|+||.++ .+|+|
T Consensus       179 ~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~~~~~~----pl----~~g~divv~S~SK~~gG~~glr  250 (427)
T PRK07049        179 LIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLGPVFQK----PL----EHGADLSVYSLTKYVGGHSDLV  250 (427)
T ss_pred             EEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCccccccCC----cc----ccCCCEEEEcCceeecCCCCcE
Confidence            889999999999999988888888654   689999999987654321    22    1124588889999999 49999


Q ss_pred             EEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccc
Q 042445           88 LGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCP  166 (246)
Q Consensus        88 ~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~  166 (246)
                      +||+++++        ++++.++.... .+..++++.+.++.+.|+.     +..+.++..++++.+.+.|+++|++..+
T Consensus       251 ~G~vv~~~--------~l~~~l~~~~~~~g~~ls~~~a~l~~r~L~t-----l~~R~~~~~~~a~~la~~L~~~p~V~~v  317 (427)
T PRK07049        251 AGAVLGRK--------ALIRQVRALRSAIGTQLDPHSCWMLGRSLET-----LVLRMERANRNARAVAEFLRDHPKVEKL  317 (427)
T ss_pred             EEEEECCH--------HHHHHHHHHHHhcCCCCCHHHHHHHHcCCCh-----HHHHHHHHHHHHHHHHHHHHhCCCccEE
Confidence            99999887        88888887654 3446899999998888863     5555666699999999999998877654


Q ss_pred             cCC
Q 042445          167 KKP  169 (246)
Q Consensus       167 ~~~  169 (246)
                      ..|
T Consensus       318 ~yp  320 (427)
T PRK07049        318 HYL  320 (427)
T ss_pred             ECC
Confidence            444

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=99.87  E-value=1.3e-20  Score=161.26  Aligned_cols=207  Identities=15%  Similarity=0.149  Sum_probs=140.0

Q ss_pred             cccCCcCCCccCCC-hhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSGFS-GSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~-~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      ++..++||||.+++ .+++++|.++|++||+++|+||+|.++.+.+..+. ....+....   +.++||.++.+++|+||
T Consensus       183 ~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~~-~~~~~~~pd---~~~~sK~l~~g~~~ig~  258 (400)
T PTZ00125        183 IVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLLA-HDHEGVKPD---IVLLGKALSGGLYPISA  258 (400)
T ss_pred             EEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhH-HHhcCCCCC---EEEEcccccCCCcCcEE
Confidence            55666899999886 46799999999999999999999988766654321 111111112   23478998765579999


Q ss_pred             EEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc----CCCCcc
Q 042445           91 LVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKE----IPCITC  165 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~  165 (246)
                      +++++        ++++.+... ...+++.+++.+.++.+.++...+.   ...+..+++.+.+.+.|++    .+.+. 
T Consensus       259 v~~~~--------~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~i~~~---~~~~~~~~~~~~l~~~l~~l~~~~~~~~-  326 (400)
T PTZ00125        259 VLAND--------DVMLVIKPGEHGSTYGGNPLACAVAVEALEVLKEE---KLAENAQRLGEVFRDGLKELLKKSPWVK-  326 (400)
T ss_pred             EEEcH--------HHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHhcCCCeE-
Confidence            99998        888887654 2334578999999988877642221   1223334444555555544    23222 


Q ss_pred             ccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHHHHHHh
Q 042445          166 PKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       166 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~~~~~  243 (246)
                      ...+ .|.+.++.++...  + .+..++. ..|.++||.+.|+.    .+++||++.  .+++++++++++|.++++++.
T Consensus       327 ~~~~-~g~~~~v~~~~~~--~-~~~~~~~-~~l~~~Gv~v~~~~----~~~lRi~~~~~~~~~~i~~~l~~l~~~l~~~~  397 (400)
T PTZ00125        327 EIRG-KGLLNAIVFDHSD--G-VNAWDLC-LKLKENGLLAKPTH----DNIIRFAPPLVITKEQLDQALEIIKKVLKSFD  397 (400)
T ss_pred             EEec-ccEEEEEEEccCc--c-hHHHHHH-HHHHHCCeEEeecC----CCEEEEECCccCCHHHHHHHHHHHHHHHHHHh
Confidence            2333 5677777776421  0 0234444 44568899999864    689999965  599999999999999998764

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=99.87  E-value=3.2e-20  Score=158.53  Aligned_cols=206  Identities=17%  Similarity=0.141  Sum_probs=137.7

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      ++++++||||.+.+   +++|.++|++||+++|+||+|.....+..+.......+. .+..++++|+||.+  +|+|+||
T Consensus       175 ~~~~v~~~tG~~~~---l~~i~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~di~~~s~sK~l--~g~r~G~  249 (393)
T TIGR01822       175 ATDGVFSMDGVIAP---LDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVMGRVDIITGTLGKAL--GGASGGF  249 (393)
T ss_pred             EEeCCccCCCCcCC---HHHHHHHHHHcCCEEEEECCccccCcCCCCCchHHhcCCCCCCeEEEEEChHHh--hCCCcEE
Confidence            55567899999976   899999999999999999999744333221111111111 23458999999985  4679999


Q ss_pred             EEeeCCCCCcchhhHHHHHHHH-hhhcC--CCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccc
Q 042445           91 LVTSDPNGILQDSGIVDSIKIF-LNISS--DPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPK  167 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~-~~~~~--~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~  167 (246)
                      +++++        ++++.+... .....  +.++..+.++..+++.  ....++.++.++++++.+.+.|++. |+.. .
T Consensus       250 ~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~--~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~  317 (393)
T TIGR01822       250 TTARK--------EVVELLRQRSRPYLFSNSLPPAVVGASIKVLEM--LEASNELRDRLWANTRYFRERMEAA-GFDI-K  317 (393)
T ss_pred             EEeCH--------HHHHHHHHhCccceecCCCCHHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHHHHHHHHc-CCCC-C
Confidence            99988        888888764 22211  2344445555555542  1235667888999999999999876 6653 3


Q ss_pred             CCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC----CCeEEEEeec--ChHHHHHHHHHHHHHHHH
Q 042445          168 KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL----KDWLRITFAV--EPSALENGLGRMKAFYDR  241 (246)
Q Consensus       168 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----~~~iRls~~~--~~~~l~~~~~~l~~~~~~  241 (246)
                      .+.++ ++.+.++...     +..++.. .|.++||.+. +..|..    ..++|++++.  +++++++++++|.+++++
T Consensus       318 ~~~~~-~~~i~~~~~~-----~~~~l~~-~L~~~gI~v~-~~~~~~~~~~~~~iRis~~~~~t~edi~~~~~~l~~~~~~  389 (393)
T TIGR01822       318 PADHP-IIPVMLYDAV-----LAQRFAR-RLLEEGIYVT-GFFYPVVPKGQARIRVQISAAHTEEQLDRAVEAFTRIGRE  389 (393)
T ss_pred             CCCCC-EEEEEeCCHH-----HHHHHHH-HHHHCCeeEe-eeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence            33443 4444444321     2344444 4557799987 444431    3579999884  799999999999998765


Q ss_pred             H
Q 042445          242 H  242 (246)
Q Consensus       242 ~  242 (246)
                      .
T Consensus       390 ~  390 (393)
T TIGR01822       390 L  390 (393)
T ss_pred             h
Confidence            4

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>PRK10534 L-threonine aldolase; Provisional

Probab=99.87  E-value=4.7e-21  Score=160.14  Aligned_cols=193  Identities=13%  Similarity=0.124  Sum_probs=131.3

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEE-E
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLG-W   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G-~   90 (246)
                      +++||  |||.+++.+++++|+++|+++++++++||+|........+ .+...+....+.++ .||||.|+++   +| |
T Consensus       134 ~l~np--~~G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~-~~~~~~~~~~~~~~-~s~SK~~~~~---~G~~  206 (333)
T PRK10534        134 SLENT--HNGKVLPREYLKQAWEFTRERNLALHVDGARIFNAVVAYG-CELKEITQYCDSFT-ICLSKGLGTP---VGSL  206 (333)
T ss_pred             EEecC--CCCeecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHHcC-CCHHHHHhcCCEEE-EEeEcCCCCc---ccce
Confidence            66655  4699999999999999999999999999998732211001 11112212212233 3899998765   68 6


Q ss_pred             EEeeCCCCCcchhhHHHHHHHHhhhcC---CCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccc
Q 042445           91 LVTSDPNGILQDSGIVDSIKIFLNISS---DPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPK  167 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~  167 (246)
                      +++++        ++++.++.....+.   ..+.+.|.++...++.    .. +..+..+++++.+.+.|+++ |+. +.
T Consensus       207 ~~~~~--------~~i~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~----~~-~~~~~~~~~r~~l~~~L~~~-g~~-~~  271 (333)
T PRK10534        207 LVGNR--------DYIKRARRWRKMTGGGMRQAGILAAAGLYALKH----NV-ARLQEDHDNAAWLAEQLREA-GAD-VM  271 (333)
T ss_pred             EEcCH--------HHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHh----hH-HHHHHHHHHHHHHHHHHHhC-CCc-cC
Confidence            77777        89998887755431   2233556665555542    12 22223455678899999987 676 34


Q ss_pred             CCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHHHH
Q 042445          168 KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAFYD  240 (246)
Q Consensus       168 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~~  240 (246)
                      +| +++|+|++++..       +.+.+.++|+++||.++|+.      ++|++..  .+.+++++++++|.+++.
T Consensus       272 ~~-~~nfv~~~~~~~-------~~~~~~~~l~~~gi~v~~~~------~~rl~~~~r~t~e~~~~~~~~l~~~~~  332 (333)
T PRK10534        272 RQ-DTNMLFVRVGEE-------QAAALGEYMRERNVLINASP------IVRLVTHLDVSREQLAEVVAHWRAFLA  332 (333)
T ss_pred             CC-CceEEEEECCch-------hHHHHHHHHHHcCeeecCCc------eEEEEEEeCCCHHHHHHHHHHHHHHhc
Confidence            44 799999988631       34455788999999999864      4788775  489999999999987764

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=99.86  E-value=9.5e-21  Score=162.73  Aligned_cols=205  Identities=19%  Similarity=0.126  Sum_probs=135.6

Q ss_pred             CCccCC-ChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCC
Q 042445           19 HVGSGF-SGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPN   97 (246)
Q Consensus        19 PtG~~~-~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~   97 (246)
                      -+|..+ +.+++++|.++|++||+++|+||+|.++.+.+. +.+....+   ....+.++||.++ +|+|+||+++++  
T Consensus       209 ~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~-~~a~~~~~---~~pDi~~lsK~l~-~G~pig~v~~~~--  281 (420)
T TIGR00700       209 EGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGA-MFACEHEG---PEPDLITTAKSLA-DGLPLSGVTGRA--  281 (420)
T ss_pred             CCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccch-hHHHhhcC---CCCCEEEeecccc-CCcceEEEEecH--
Confidence            356655 556699999999999999999999999987664 22222222   2233556999986 899999999998  


Q ss_pred             CCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEE
Q 042445           98 GILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFV  175 (246)
Q Consensus        98 ~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~  175 (246)
                            ++++.+... ...+++.|+++|+++.+.++... +...+..++.-...++.+.+..+++|.+.. +.+. |.++
T Consensus       282 ------~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~-vrg~-G~~~  353 (420)
T TIGR00700       282 ------EIMDAPAPGGLGGTYAGNPLACAAALAVLAIIESEGLIERARQIGRLVTDRLTTLKAVDPRIGD-VRGL-GAMI  353 (420)
T ss_pred             ------HHHhhcCCCCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCCEEE-eecc-ceEE
Confidence                  888877543 33455889999999988776322 223333333322233333333333554442 3444 7888


Q ss_pred             EEEeccccccCC-CChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHH
Q 042445          176 MVKLNYSLLEGI-NSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYD  240 (246)
Q Consensus       176 ~~~~~~~~~~~~-~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~  240 (246)
                      |+++....-... ......+...+.++||.+.|+..|  .+++||+++.  +++++++++++|.+++.
T Consensus       354 ~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~p~~~f--~~~lRl~p~l~~~~~~l~~~~~~l~~~l~  419 (420)
T TIGR00700       354 AVELVDPGTTEPDAGLAERIATAAHAAGLLLLTCGMF--GNIIRFLPPLTIGDELLSEGLDILCAILA  419 (420)
T ss_pred             EEEEecCCCCCccHHHHHHHHHHHHHCCeEEeccCCC--CCEEEEECCCCcCHHHHHHHHHHHHHHhh
Confidence            887742210000 011233444457899999998766  4899999873  89999999999999874

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK07505 hypothetical protein; Provisional

Probab=99.86  E-value=3.5e-20  Score=158.69  Aligned_cols=215  Identities=13%  Similarity=0.098  Sum_probs=138.0

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCC-CccccccC--CcccEEEE
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTP-FVSMGVFG--SIVPLLTL   74 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~-~~~~~~~~--~~~~~i~~   74 (246)
                      +.+++.+.++    ++++|+||||.+++   +++|.++|+++|+++|+||+|+...++..+ ......++  ..++++++
T Consensus       170 ~~l~~~~~~~~~~~vl~~p~~~~G~~~~---~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~  246 (402)
T PRK07505        170 DALEDICKTNKTVAYVADGVYSMGGIAP---VKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIA  246 (402)
T ss_pred             HHHHHHHhcCCCEEEEEecccccCCcCC---HHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEEE
Confidence            3445544432    88999999999998   788889999999999999999654443211 11112222  35678999


Q ss_pred             cccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcC--CCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 042445           75 GSISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISS--DPATFIQGAVPQILEKTEEEFFSKIIDILRETAD  151 (246)
Q Consensus        75 ~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~--~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~  151 (246)
                      .|+||.|+++|   ||++++++       ++++.+..... .++  +++++++.++.+.++...+.++.+.++.++++.+
T Consensus       247 ~s~sK~~~~~G---g~~~~~~~-------~~~~~~~~~~~~~t~~~~~~~~a~aa~~a~l~~~~~~~~~~~~~~l~~~~~  316 (402)
T PRK07505        247 ASLGKAFGASG---GVIMLGDA-------EQIELILRYAGPLAFSQSLNVAALGAILASAEIHLSEELDQLQQKLQNNIA  316 (402)
T ss_pred             EechhhhhccC---eEEEeCCH-------HHHHHHHHhCCCceeCCCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence            99999999887   89876442       77887776533 222  3455677777777663223444555566666655


Q ss_pred             HHHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC---CCeEEEEeec--ChH
Q 042445          152 KCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFAV--EPS  226 (246)
Q Consensus       152 ~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~iRls~~~--~~~  226 (246)
                      .+...+...      ....+.+..++.++...      ....+.+.|.++||.+.++.++..   .++|||++..  +++
T Consensus       317 ~~~~~~~~~------~~g~~~~i~~~~~~~~~------~~~~~~~~l~~~Gi~v~~~~~p~~~~~~~~lRi~~~~~~t~e  384 (402)
T PRK07505        317 LFDSLIPTE------QSGSFLPIRLIYIGDED------TAIKAAKQLLDRGFYTSPVFFPVVAKGRAGLRIMFRASHTND  384 (402)
T ss_pred             HHHHHHHhc------CCCCCCCEEEEEeCCHH------HHHHHHHHHHHCCCeEeeecCCCCCCCCceEEEecCccCCHH
Confidence            443332111      01122222233333211      234445566689999998754432   3689999994  999


Q ss_pred             HHHHHHHHHHHHHHH
Q 042445          227 ALENGLGRMKAFYDR  241 (246)
Q Consensus       227 ~l~~~~~~l~~~~~~  241 (246)
                      +++++++.|.+++++
T Consensus       385 ei~~~~~~l~~~l~~  399 (402)
T PRK07505        385 EIKRLCSLLKEILDE  399 (402)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999998865

>PLN02721 threonine aldolase

Probab=99.86  E-value=4.2e-20  Score=155.54  Aligned_cols=205  Identities=16%  Similarity=0.094  Sum_probs=131.7

Q ss_pred             cc-cCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEE
Q 042445           12 FS-DFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~-~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      ++ +.||||||.+++.+++++|.++|+++|+++|+|++|........+. ....+..... .++.|+||.|+++   +||
T Consensus       142 ~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~-~~~~~~~~~d-~~~~s~sK~l~~~---~G~  216 (353)
T PLN02721        142 CLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGV-PVHRLVKAAD-SVSVCLSKGLGAP---VGS  216 (353)
T ss_pred             EEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCC-CHHHHhhhCC-EEEEecccccCCc---eee
Confidence            44 4468999999999999999999999999999999886332110011 1111111112 3355799998654   576


Q ss_pred             -EEeeCCCCCcchhhHHHHHHHHhhhc-CCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCcc-cc
Q 042445           91 -LVTSDPNGILQDSGIVDSIKIFLNIS-SDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITC-PK  167 (246)
Q Consensus        91 -i~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~  167 (246)
                       +++++        ++++.+....... ..++..++.++..+..  .+.+.++.++ ..++++.+.+.|++++++.. +.
T Consensus       217 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~-~~~~~~~l~~~L~~~~~~~~~~~  285 (353)
T PLN02721        217 VIVGSK--------SFIRKAKRLRKTLGGGMRQVGVLAAAALVA--LQENVPKLED-DHKKAKLLAEGLNQIKGLRVNVA  285 (353)
T ss_pred             EEecCH--------HHHHhHHHHHHhcCCCeehhHHHHHHHHHH--HHHHHHHHHH-HHHHHHHHHHHHHhCCCcEEecC
Confidence             55555        8888776654322 1233333333322222  2333444333 35678899999998877642 33


Q ss_pred             CCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHH
Q 042445          168 KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDR  241 (246)
Q Consensus       168 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~  241 (246)
                      .| .++++|++++...  +.  +.+.+.+.|.++||.+.|+.    .+++|++++.  +++++++++++|++++..
T Consensus       286 ~~-~~~~~~~~~~~~~--~~--~~~~~~~~L~~~gi~v~~~~----~~~lR~~~~~~~~~~~i~~~~~~l~~~~~~  352 (353)
T PLN02721        286 AV-ETNIVYFDITDGS--RI--TAEKLCKSLEEHGVLLMPGN----SSRIRVVTHHQISDSDVQYTLSCFQQAALT  352 (353)
T ss_pred             Cc-cceEEEEEccCCc--cc--cHHHHHHHHHhCCcEEecCC----CceEEEEecCcCCHHHHHHHHHHHHHHhhc
Confidence            34 4567888886420  01  33445556679999999975    6799999973  899999999999987653

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=99.86  E-value=5.2e-20  Score=157.49  Aligned_cols=213  Identities=14%  Similarity=0.084  Sum_probs=145.6

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.++++    ++++||||||.+++   +++|.++|+++|+++++|++|+.+...    ..+...+   ..+++.|.
T Consensus       148 ~~l~~~i~~~t~lv~i~~~~n~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~~~~~~----~~~~~~~---~d~~~~s~  217 (398)
T TIGR03392       148 RQLPELLTPRTRILALGQMSNVTGGCPD---LARAITLAHQYGAVVVVDGAQGVVHGP----PDVQALD---IDFYAFSG  217 (398)
T ss_pred             HHHHHHhccCceEEEEECccccccccCC---HHHHHHHHHHcCCEEEEEhhhhcCCCC----CChhhcC---CCEEEEec
Confidence            4455556554    77899999999987   778999999999999999999754322    1122222   23677888


Q ss_pred             ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHh---------------------hh-cCCCCchHHHHHHHHHhhch
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFL---------------------NI-SSDPATFIQGAVPQILEKTE  135 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~---------------------~~-~~~~~~~~q~~~~~~l~~~~  135 (246)
                      +|.++.+|  +||+++++        ++++.+....                     .+ ..+.+.....++..+++.-.
T Consensus       218 ~K~~gp~G--~G~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~  287 (398)
T TIGR03392       218 HKLYGPTG--IGVLYGKT--------ELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLT  287 (398)
T ss_pred             ccccCCCc--eEEEEEcH--------HHHhhCCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHH
Confidence            89887666  89999987        7666553211                     01 11334445556666665322


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcC---
Q 042445          136 EEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG---  212 (246)
Q Consensus       136 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~---  212 (246)
                      +...++.+++..+.++.+.+.|++++++..+..+ .+.++++.++..      +.. .+...|.++||.+.+|..|.   
T Consensus       288 ~~g~~~i~~~~~~l~~~l~~~l~~l~g~~~~~~~-~~~i~~~~~~~~------~~~-~l~~~L~~~gI~v~~g~~~~~~~  359 (398)
T TIGR03392       288 DIDIAAAEAWSVSLADLAEERLAQLPGFRSFRCP-GSSLLAFDFAGV------HHS-DLAALLAESGIALRAGQHCAQPL  359 (398)
T ss_pred             HhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC-CCcEEEEEeCCc------CHH-HHHHHHHhCCEEEecCccchHHH
Confidence            3334566777788888889999888887643233 344555555421      234 44556788999999998764   


Q ss_pred             -----CCCeEEEEeec--ChHHHHHHHHHHHHHHHHH
Q 042445          213 -----LKDWLRITFAV--EPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       213 -----~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~  242 (246)
                           .++++|+|+..  ++++++.+++.|+++++++
T Consensus       360 ~~~~g~~~~iRvS~~~~~t~~ei~~l~~~l~~~~~~~  396 (398)
T TIGR03392       360 MAALGVSGTLRASFAPYNTQQDVDALVDAVGAALELL  396 (398)
T ss_pred             HHHhCCCCEEEEEeeccCCHHHHHHHHHHHHHHHHHh
Confidence                 26899999984  8999999999999988754

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>PRK07179 hypothetical protein; Provisional

Probab=99.86  E-value=6.7e-20  Score=157.20  Aligned_cols=215  Identities=15%  Similarity=0.120  Sum_probs=144.0

Q ss_pred             hhhhhhhcc---c--cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCccc-EEEEc
Q 042445            2 ELINQDITR---E--FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVP-LLTLG   75 (246)
Q Consensus         2 e~~~~~~~~---~--~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~-~i~~~   75 (246)
                      +.+++.+++   .  ++++++||||.+.+   +++|.++|+++|+++|+||+|+...++..+...+..++.... .+++.
T Consensus       171 ~~l~~~l~~~~~~lV~v~~v~n~tG~i~p---l~~I~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~vdi~~~  247 (407)
T PRK07179        171 DHLRRQIERHGPGIIVVDSVYSTTGTIAP---LADIVDIAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLTSRVHFITA  247 (407)
T ss_pred             HHHHHHHHhcCCeEEEECCCCCCCCcccc---HHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHhcCCCCCCCEEEe
Confidence            345555543   2  67889999999999   778999999999999999999865544322222223332222 48889


Q ss_pred             ccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh---hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 042445           76 SISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN---ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADK  152 (246)
Q Consensus        76 s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~  152 (246)
                      |+||.++.   |+||+++++        ++++.+.....   ...+.++....++.++++.  .....+.++.++++++.
T Consensus       248 S~sK~~g~---~~G~l~~~~--------~~~~~~~~~~~~~~~~~t~~~~~~aa~~aal~~--~~~~~~~~~~l~~~~~~  314 (407)
T PRK07179        248 SLAKAFAG---RAGIITCPR--------ELAEYVPFVSYPAIFSSTLLPHEIAGLEATLEV--IESADDRRARLHANARF  314 (407)
T ss_pred             echHhhhc---cCeEEEeCH--------HHHHHHHHhCcCeeeCCCCCHHHHHHHHHHHHH--HhcCHHHHHHHHHHHHH
Confidence            99999853   689999987        87777765432   1212233333334444442  22335677889999999


Q ss_pred             HHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcC---CCCeEEEEeec--ChHH
Q 042445          153 CCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG---LKDWLRITFAV--EPSA  227 (246)
Q Consensus       153 l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~---~~~~iRls~~~--~~~~  227 (246)
                      +.+.|+++ |+.. .  ..+.++++.++...      +.+.+.+.|.++||.+..-....   ..+++||+++.  ++++
T Consensus       315 l~~~L~~~-g~~v-~--~~~~i~~l~~~~~~------~~~~~~~~L~~~GI~~~~~~~p~~~~~~~~lRis~~~~~t~ed  384 (407)
T PRK07179        315 LREGLSEL-GYNI-R--SESQIIALETGSER------NTEVLRDALEERNVFGAVFCAPATPKNRNLIRLSLNADLTASD  384 (407)
T ss_pred             HHHHHHHc-CCCC-C--CCCCEEEEEeCCHH------HHHHHHHHHHHCCceEeeecCCCCCCCCceEEEEECCCCCHHH
Confidence            99999887 6653 2  33567777664321      44556677888999743211111   15799999995  8999


Q ss_pred             HHHHHHHHHHHHHHH
Q 042445          228 LENGLGRMKAFYDRH  242 (246)
Q Consensus       228 l~~~~~~l~~~~~~~  242 (246)
                      ++++++.|++++++.
T Consensus       385 i~~~~~~l~~~~~~~  399 (407)
T PRK07179        385 LDRVLEVCREARDEV  399 (407)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999988764

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=99.86  E-value=7.9e-20  Score=156.21  Aligned_cols=206  Identities=18%  Similarity=0.089  Sum_probs=136.1

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCC--CccccccCCcccEEEEcccccccccCCceEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTP--FVSMGVFGSIVPLLTLGSISKRGIVPGLRLG   89 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~--~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G   89 (246)
                      ++.+.+||||..   +++++|.++|++||+++|+||+|....++..+  ......+. .+..++++|+||.++  |+|+|
T Consensus       179 ~~~~v~~~~G~~---~~~~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~-~~~~i~~~S~sK~~~--g~r~G  252 (397)
T PRK06939        179 ATDGVFSMDGDI---APLPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVM-DRVDIITGTLGKALG--GASGG  252 (397)
T ss_pred             EEecCcCCCCCc---CCHHHHHHHHHHhCCEEEEECcccccCcCCCCCCHHHHcCCC-CCCcEEEEECHHHhC--ccCce
Confidence            433346899975   45899999999999999999999643322211  11111221 234699999999973  55899


Q ss_pred             EEEeeCCCCCcchhhHHHHHHHHhh-h--cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccc
Q 042445           90 WLVTSDPNGILQDSGIVDSIKIFLN-I--SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCP  166 (246)
Q Consensus        90 ~i~~~~~~~~~~~~~~~~~l~~~~~-~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~  166 (246)
                      |+++++        ++++.+..... .  ....++..+.++.++++..  ....+.++.++++++.+.+.|+++ ++. .
T Consensus       253 ~v~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~l~~~L~~~-~~~-~  320 (397)
T PRK06939        253 YTAGRK--------EVIDWLRQRSRPYLFSNSLAPAIVAASIKVLELL--EESDELRDRLWENARYFREGMTAA-GFT-L  320 (397)
T ss_pred             EEEeCH--------HHHHHHHHhCccccccCCCCHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHHHc-CCC-c
Confidence            999988        88888876422 1  1123344455555555421  123567788999999999999887 555 3


Q ss_pred             cCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC---CCeEEEEee--cChHHHHHHHHHHHHHHHH
Q 042445          167 KKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFA--VEPSALENGLGRMKAFYDR  241 (246)
Q Consensus       167 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~iRls~~--~~~~~l~~~~~~l~~~~~~  241 (246)
                      ..+.++++. +.++...     ++.+++.. |.++||.+.++.++..   .+++|++++  .+++++++++++|.+++++
T Consensus       321 ~~~~~~~~~-~~~~~~~-----~~~~~~~~-L~~~gI~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~l~~L~~~~~~  393 (397)
T PRK06939        321 GPGEHPIIP-VMLGDAK-----LAQEFADR-LLEEGVYVIGFSFPVVPKGQARIRTQMSAAHTKEQLDRAIDAFEKVGKE  393 (397)
T ss_pred             CCCCCCEEE-EEECCHH-----HHHHHHHH-HHHCCceEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence            445555553 3344221     24455554 5566999986543211   468999986  3899999999999999876


Q ss_pred             H
Q 042445          242 H  242 (246)
Q Consensus       242 ~  242 (246)
                      .
T Consensus       394 ~  394 (397)
T PRK06939        394 L  394 (397)
T ss_pred             h
Confidence            4

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=99.86  E-value=1.4e-19  Score=154.19  Aligned_cols=204  Identities=14%  Similarity=0.138  Sum_probs=140.4

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccc--cccCCcccEEEEcccccccccCCceEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSM--GVFGSIVPLLTLGSISKRGIVPGLRLG   89 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~--~~~~~~~~~i~~~s~sK~~~~~g~r~G   89 (246)
                      +.++++||||.+.+   +++|.++|++||+++|+||+|..+.++..+....  ..+. .+.++++.||||.|+++|   |
T Consensus       168 ~~~~v~~~tG~~~~---~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~g---G  240 (385)
T TIGR01825       168 VTDGVFSMDGDVAP---LPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHHFGLE-DKVDIQVGTLSKAIGVVG---G  240 (385)
T ss_pred             EEecCCcCCCCccC---HHHHHHHHHHhCCEEEEECcccccCcCCCCCccHhhcCCC-cCCcEEEEeccHHhhcCC---C
Confidence            55666899999877   7889999999999999999998776542211111  1222 457899999999998777   9


Q ss_pred             EEEeeCCCCCcchhhHHHHHHHHhh-h--cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccc
Q 042445           90 WLVTSDPNGILQDSGIVDSIKIFLN-I--SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCP  166 (246)
Q Consensus        90 ~i~~~~~~~~~~~~~~~~~l~~~~~-~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~  166 (246)
                      |+++++        ++++.+..... .  +...++..+.++.++++... .. .+..+.+.++++.+.+.|+++ ++. +
T Consensus       241 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~-~~-~~~~~~~~~~~~~l~~~L~~~-g~~-~  308 (385)
T TIGR01825       241 YAAGHK--------ELIEYLKNRARPFLFSTAQPPAVVAALAAAVDELQ-RS-PELMERLWDNTRFFKAGLGKL-GYD-T  308 (385)
T ss_pred             EEecCH--------HHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHh-cC-HHHHHHHHHHHHHHHHHHHHc-CCC-C
Confidence            999887        88888876532 2  22346677778777776321 11 235566778889999999886 666 3


Q ss_pred             cCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC----CCeEEEEee--cChHHHHHHHHHHHHHHH
Q 042445          167 KKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL----KDWLRITFA--VEPSALENGLGRMKAFYD  240 (246)
Q Consensus       167 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----~~~iRls~~--~~~~~l~~~~~~l~~~~~  240 (246)
                      ..|++. ++.+.++...     ++.+++.. |.++||.+.+ ..|+.    .+++|+++.  .+++++++++++|+++++
T Consensus       309 ~~~~~~-~~~~~~~~~~-----~~~~~~~~-L~~~gi~v~~-~~~~~~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~~~  380 (385)
T TIGR01825       309 GGSETP-ITPVVIGDEK-----AAQEFSRR-LFDEGIFAQS-IVFPTVPRGTARIRNIPTAEHTKDDLDQALDAYEKVGK  380 (385)
T ss_pred             CCCCCC-EEEEEECCHH-----HHHHHHHH-HHHCCcEEcc-cCCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence            445544 4444444211     13445454 4556998854 33332    478999886  499999999999999986


Q ss_pred             HH
Q 042445          241 RH  242 (246)
Q Consensus       241 ~~  242 (246)
                      ++
T Consensus       381 ~~  382 (385)
T TIGR01825       381 EL  382 (385)
T ss_pred             Hh
Confidence            54

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=99.86  E-value=5.1e-20  Score=157.68  Aligned_cols=214  Identities=12%  Similarity=0.096  Sum_probs=145.5

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCCh-hhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSG-SFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGS   76 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~-~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s   76 (246)
                      +.+++.+.++    ++++|+||+|.++++ +++++|.++|++||+++|+||+|.++.+.+..+ .....+....+++   
T Consensus       178 ~~le~~i~~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~~~-~~~~~g~~~D~~~---  253 (401)
T PRK00854        178 EALEAAITPNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKLL-AEEHEGIEADVTL---  253 (401)
T ss_pred             HHHHHHhCCCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCchHh-HHhhcCCCCCEEE---
Confidence            3455555443    888999999999985 569999999999999999999999776655322 1111121112222   


Q ss_pred             cccccccCCceEEEEEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445           77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD  155 (246)
Q Consensus        77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  155 (246)
                      +||.++...+|+||+++++        ++++.+... ...+++.+++.+.++.+.|+...+   ....+.++++.+.+.+
T Consensus       254 ~~K~l~gg~~~ig~v~~~~--------~~~~~l~~~~~~~t~~~~~~~~aa~~a~L~~l~~---~~~~~~~~~~~~~l~~  322 (401)
T PRK00854        254 IGKALSGGFYPVSAVLSNS--------EVLGVLKPGQHGSTFGGNPLACAVARAALKVLTE---EGMIENAAEMGAYFLE  322 (401)
T ss_pred             ecccccCCccCeEEEEEcH--------HHHhcccCCCCCCCCCcCHHHHHHHHHHHHHHHH---cCHHHHHHHHHHHHHH
Confidence            4699865558999999998        888877643 333446799999999999974221   2356777888888999


Q ss_pred             HhhcCCCCc-cccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHH
Q 042445          156 RLKEIPCIT-CPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGL  232 (246)
Q Consensus       156 ~L~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~  232 (246)
                      .|++++... ....+.|.++. +.+....    .+..++ .+.|.++||.+.+..    .+++|+++.  .+++++++++
T Consensus       323 ~L~~~~~~~~~~~~g~g~~~~-i~~~~~~----~~~~~~-~~~L~~~GV~v~~~~----~~~lR~~p~~~~t~e~i~~~i  392 (401)
T PRK00854        323 GLRSIRSNIVREVRGRGLMLA-VELEPEA----GGARQY-CEALKERGLLAKDTH----DHTIRLAPPLVITREQVDWAL  392 (401)
T ss_pred             HHHhhccCceEEEeccceEEE-EEEecCc----hhHHHH-HHHHHHCCeEEecCC----CCEEEEeCCcccCHHHHHHHH
Confidence            888763211 11234444444 3343211    023444 455667899987632    579999975  4999999999


Q ss_pred             HHHHHHHH
Q 042445          233 GRMKAFYD  240 (246)
Q Consensus       233 ~~l~~~~~  240 (246)
                      ++|++++.
T Consensus       393 ~~l~~~l~  400 (401)
T PRK00854        393 EQIAKVLA  400 (401)
T ss_pred             HHHHHHhh
Confidence            99998864

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=99.85  E-value=6.1e-20  Score=158.98  Aligned_cols=213  Identities=17%  Similarity=0.158  Sum_probs=142.1

Q ss_pred             cccCCcCCC-cc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEE
Q 042445           12 FSDFQVFHV-GS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLG   89 (246)
Q Consensus        12 ~~~~p~NPt-G~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G   89 (246)
                      ++.-|-+.. |. +++.+++++|.++|++||+++|+||+|.++.+.+..+ +...++....   +.|+||.++ +|+|+|
T Consensus       223 vi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g~~~-a~~~~~v~pD---i~t~sK~l~-~G~pig  297 (451)
T PRK06918        223 VVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKYF-AIEHFDVVPD---LITVSKSLG-AGVPIS  297 (451)
T ss_pred             EEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccCcee-hhHhcCCCCC---EEeeehhhc-CCCccE
Confidence            666665554 55 4456679999999999999999999999998776432 3344432222   558999986 899999


Q ss_pred             EEEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchH----HHHHHHHHHHHHHHHHHHHHhhcCCCCc
Q 042445           90 WLVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEE----EFFSKIIDILRETADKCCDRLKEIPCIT  164 (246)
Q Consensus        90 ~i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~----~~~~~~~~~~~~~~~~l~~~L~~~~~~~  164 (246)
                      |+++++        ++++.+... ...+++.|+++|.++.+.++...+    .+..+..+.++++.+.+.   ++.+.+.
T Consensus       298 ~v~~~~--------~i~~~~~~~~~~~T~~g~~l~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~l~---~~~~~~~  366 (451)
T PRK06918        298 GVIGRK--------EIMDESAPGELGGTYAGSPLGCAAALAVLDIIEKENLNDRAIELGKVVMNRFEEMK---NKYNCIG  366 (451)
T ss_pred             EEEEcH--------HHHhccCCCCcCcCCCcCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH---hhCCCce
Confidence            999998        888877543 334558899999997777763322    233333333333332222   2343333


Q ss_pred             cccCCCCceEEEEEecccc--ccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHHHH
Q 042445          165 CPKKPEGSMFVMVKLNYSL--LEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAFYD  240 (246)
Q Consensus       165 ~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~~  240 (246)
                       .+.+.|+++.|....+..  .++ ....+.+.+.+.++||.+.|+..|  .+++||+++  .+++++++++++|.++++
T Consensus       367 -~vrg~G~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~Gvlv~~~~~~--~~~lrl~p~l~~t~~~id~~l~~l~~~l~  442 (451)
T PRK06918        367 -DVRGLGAMCAFELVQDRKTKEPD-KTLTANICKEANKRGLLLLSAGTY--GNVIRVLMPLVITDEQLEEGLTIIEESLQ  442 (451)
T ss_pred             -eeccceeEEEEEEccCCCcCCCc-HHHHHHHHHHHHHCCeEEeecCCC--CCEEEEECCCccCHHHHHHHHHHHHHHHH
Confidence             245677777776432210  000 012334455567899999997655  488999986  489999999999999998


Q ss_pred             HHhh
Q 042445          241 RHAE  244 (246)
Q Consensus       241 ~~~~  244 (246)
                      +...
T Consensus       443 ~~~~  446 (451)
T PRK06918        443 ACYE  446 (451)
T ss_pred             HHHH
Confidence            7643

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=99.85  E-value=2.4e-19  Score=150.64  Aligned_cols=203  Identities=15%  Similarity=0.090  Sum_probs=139.9

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCC-CccccccCCcccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTP-FVSMGVFGSIVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~-~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      ++++|+||||...+   +++|.++|+++|+++|+|++|....+...+ ..........+..++++|+||.++.+|   ||
T Consensus       137 ~~~~~~~~tG~~~~---~~~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g---G~  210 (349)
T cd06454         137 VTEGVYSMDGDIAP---LPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGAVG---GY  210 (349)
T ss_pred             EEeccccCCCCccC---HHHHHHHHHHcCCEEEEEccccccccCCCCCChhhhccccccCcEEEeechhhhcccC---CE
Confidence            77788999998866   789999999999999999999854432211 111111223456799999999998766   99


Q ss_pred             EEeeCCCCCcchhhHHHHHHHHhh-h--cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccc
Q 042445           91 LVTSDPNGILQDSGIVDSIKIFLN-I--SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPK  167 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~~~-~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~  167 (246)
                      +++++        ++++.+..... .  +...++..+.++...++....  .+..++.++++++.+.+.|+++ ++.. .
T Consensus       211 i~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~l~~~l~~~-g~~~-~  278 (349)
T cd06454         211 IAGSK--------ELIDYLRSYARGFIFSTSLPPAVAAAALAALEVLQG--GPERRERLQENVRYLRRGLKEL-GFPV-G  278 (349)
T ss_pred             EECCH--------HHHHHHHHhchhhhccCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHhc-CCcc-c
Confidence            99887        88887766532 2  225667777777777763222  4567788899999999999887 5553 3


Q ss_pred             CCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC---CCeEEEEeec--ChHHHHHHHHHHHHH
Q 042445          168 KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFAV--EPSALENGLGRMKAF  238 (246)
Q Consensus       168 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~iRls~~~--~~~~l~~~~~~l~~~  238 (246)
                      .+.++++.++.++...      +.+.+.+.|.++||.+.++.+...   .+++|++++.  +++++++++++|+++
T Consensus       279 ~~~~~~~~~~~~~~~~------~~~~~~~~L~~~gI~~~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  348 (349)
T cd06454         279 GSPSHIIPPLIGDDPA------KAVAFSDALLERGIYVQAIRYPTVPRGTARLRISLSAAHTKEDIDRLLEALKEV  348 (349)
T ss_pred             CCCCCcEEEEeCCChH------HHHHHHHHHHhCCceEEEecCCccCCCCCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence            3334444444333211      334445556677999998643221   5799999984  899999999998764

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=99.85  E-value=4e-20  Score=158.85  Aligned_cols=207  Identities=17%  Similarity=0.188  Sum_probs=138.3

Q ss_pred             cccCCc-CCCccCC-ChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEE
Q 042445           12 FSDFQV-FHVGSGF-SGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLG   89 (246)
Q Consensus        12 ~~~~p~-NPtG~~~-~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G   89 (246)
                      ++.+|+ |++|..+ +.+++++|.++|++||+++|+||+|+++...+... .....+..   ..+.|+||.++. |+|+|
T Consensus       195 vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~~-~~~~~~~~---~d~~t~sK~l~~-g~~~g  269 (413)
T cd00610         195 VIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMF-AFEHFGVE---PDIVTLGKGLGG-GLPLG  269 (413)
T ss_pred             EEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchh-hHhhcCCC---CCeEEEcccccC-ccccE
Confidence            555554 5569866 67789999999999999999999999875444321 11112211   124589999876 79999


Q ss_pred             EEEeeCCCCCcchhhHHHHH--HHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCC---CC
Q 042445           90 WLVTSDPNGILQDSGIVDSI--KIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIP---CI  163 (246)
Q Consensus        90 ~i~~~~~~~~~~~~~~~~~l--~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~  163 (246)
                      |+++++        ++++.+  ... ...+++.+++.+.++.++++....   ....+.++++.+.+.+.|+++.   ++
T Consensus       270 ~~~~~~--------~~~~~~~~~~~~~~~t~~~~~~~~~a~~a~l~~l~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~  338 (413)
T cd00610         270 AVLGRE--------EIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVLEE---EGLLENAAELGEYLRERLRELAEKHPL  338 (413)
T ss_pred             EEEEcH--------HHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence            999987        888886  222 223447889999988888863221   3455666677777777776531   11


Q ss_pred             ccccCCCCceEEEEEeccccccC-C-CChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHH
Q 042445          164 TCPKKPEGSMFVMVKLNYSLLEG-I-NSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFY  239 (246)
Q Consensus       164 ~~~~~~~~g~~~~~~~~~~~~~~-~-~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~  239 (246)
                      . ......|.++++.++...... . ......+...|.++||.+.|+.    .+.+|++++.  +++++++++++|.+++
T Consensus       339 ~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~----~~~lR~~~~~~~t~~~i~~~~~~l~~~l  413 (413)
T cd00610         339 V-GDVRGRGLMIGIELVKDRATKPPDKELAAKIIKAALERGLLLRPSG----GNVIRLLPPLIITEEEIDEGLDALDEAL  413 (413)
T ss_pred             E-EEeecCceEEEEEEecCCCcCCcchHHHHHHHHHHHHCCeEEeecC----CCEEEEECCCcCCHHHHHHHHHHHHHhC
Confidence            1 112345777887776431000 0 0133445566778999999975    6789998884  8899999999998753

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=99.85  E-value=2.3e-20  Score=151.24  Aligned_cols=202  Identities=20%  Similarity=0.184  Sum_probs=155.1

Q ss_pred             CCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCC-CCCccccccCC-cccEEEEcccccccccCCceEEEEE
Q 042445           15 FQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGN-TPFVSMGVFGS-IVPLLTLGSISKRGIVPGLRLGWLV   92 (246)
Q Consensus        15 ~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~-~~~~i~~~s~sK~~~~~g~r~G~i~   92 (246)
                      ..|||||..++.++|++|+++.++.+.+.+.|-+|.+|.-+- .+...+..+.. ...+++..|+||.|++.|-|+|.+.
T Consensus       180 CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~GleeDa~~lR~~a~~~~~~lva~S~SKnfgLYgERVGa~~  259 (396)
T COG1448         180 CCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADGLEEDAYALRLFAEVGPELLVASSFSKNFGLYGERVGALS  259 (396)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccchHHHHHHHHHHHHhCCcEEEEehhhhhhhhhhhccceeE
Confidence            347999999999999999999999999999999999987552 12223333322 2238999999999999999999953


Q ss_pred             --eeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhch-----HHHHHHHHHHHHHHHHHHHHHhhcC-C--
Q 042445           93 --TSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTE-----EEFFSKIIDILRETADKCCDRLKEI-P--  161 (246)
Q Consensus        93 --~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~-~--  161 (246)
                        +.+.+...   .+...++.. +..+++++.-+...++.+|+++.     +..+..++.++.+.|..+.+.|++. +  
T Consensus       260 vva~~~~~a~---~v~sqlk~~iR~~ySnPP~~Ga~vva~IL~~p~Lra~W~~El~~Mr~Ri~~mR~~lv~~L~~~~~~~  336 (396)
T COG1448         260 VVAEDAEEAD---RVLSQLKAIIRTNYSNPPAHGAAVVATILNNPELRAEWEQELEEMRQRILEMRQALVDALKALGAPR  336 (396)
T ss_pred             EEeCCHHHHH---HHHHHHHHHHHhccCCCchhhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCc
Confidence              34431111   333344433 45677888889999999999764     3568888999999999999999873 2  


Q ss_pred             CCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec-ChHHHHHHHHHHHHH
Q 042445          162 CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV-EPSALENGLGRMKAF  238 (246)
Q Consensus       162 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~-~~~~l~~~~~~l~~~  238 (246)
                      .+. +...+-|||.+.-+          +.+++.++..++||++..+.        |+|++- ++..++..++.|.++
T Consensus       337 ~f~-~i~~Q~GMFsy~Gl----------s~~QV~rLree~~IY~v~sG--------Ri~vaGl~~~ni~~va~ai~~v  395 (396)
T COG1448         337 NFD-FIISQRGMFSYTGL----------SPEQVDRLREEFGIYLVASG--------RINVAGLNTSNIDYVAKAIAAV  395 (396)
T ss_pred             ccc-hHhhcCceeecCCC----------CHHHHHHHHHhccEEEecCC--------eeeeccCChhhHHHHHHHHHhh
Confidence            355 56778899998533          67888999999999998765        999995 899999998888765

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=99.85  E-value=3e-19  Score=153.06  Aligned_cols=207  Identities=17%  Similarity=0.119  Sum_probs=144.0

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      ++++++||+|.+.+   +++|.++|+++|+++|+||+|+...++..+.......+. ....++++||||.|+++|   ||
T Consensus       182 ~~~~v~~~~G~~~~---l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~~tlsKa~g~~G---G~  255 (406)
T PRK13393        182 AFESVYSMDGDIAP---IAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGTLAKAFGVMG---GY  255 (406)
T ss_pred             EEcCCCCCCCchhC---HHHHHHHHHHcCCEEEEECCccccccCCCCCchhhhcCCCCCCeEEEEeCchhhcccC---ce
Confidence            67789999999988   888999999999999999999855544322111111111 123578899999999988   99


Q ss_pred             EEeeCCCCCcchhhHHHHHHHHhh---hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccc
Q 042445           91 LVTSDPNGILQDSGIVDSIKIFLN---ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPK  167 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~  167 (246)
                      +++++        ++++.++....   ++++.++..+.++.++|+... .. ...++.++++++.+.+.|+++ ++. ..
T Consensus       256 ~~~~~--------~~~~~l~~~~~~~~~t~~~~p~~~aa~~aaL~~~~-~~-~~~~~~~~~~~~~l~~~L~~~-g~~-~~  323 (406)
T PRK13393        256 ITGSA--------ALCDFIRSFASGFIFTTSLPPAVAAGALASVRHLK-AS-SAERERHQDRVARLRARLDKA-GIP-HL  323 (406)
T ss_pred             eeCCH--------HHHHHHHHhCcCceecCccCHHHHHHHHHHHHHHh-hC-HHHHHHHHHHHHHHHHHHHHc-CCC-cC
Confidence            99887        88888876532   233567788888888887422 22 223456788899999999876 554 33


Q ss_pred             CCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC---CCeEEEEeec--ChHHHHHHHHHHHHHHHHH
Q 042445          168 KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFAV--EPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       168 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~iRls~~~--~~~~l~~~~~~l~~~~~~~  242 (246)
                      .+. +.++.+.+....     +..++...+++++||.+.++.+...   .+++|+++..  ++++++++++.|.+++++.
T Consensus       324 ~~~-~~i~~v~~~~~~-----~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~~iRis~~~~~t~edid~l~~~l~~~~~~~  397 (406)
T PRK13393        324 PNP-SHIVPVMVGDPV-----LCKQISDELLDRYGIYVQPINYPTVPRGTERLRITPSPLHTDADIEHLVQALSEIWARL  397 (406)
T ss_pred             CCC-CCeEEEEeCCHH-----HHHHHHHHHHHhCCEEEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHhc
Confidence            444 444444453211     1344444444457999998654432   4789999984  8999999999999988654

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=99.84  E-value=2.6e-19  Score=150.93  Aligned_cols=213  Identities=17%  Similarity=0.138  Sum_probs=144.9

Q ss_pred             hhhhhhhcc-c----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcc
Q 042445            2 ELINQDITR-E----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGS   76 (246)
Q Consensus         2 e~~~~~~~~-~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s   76 (246)
                      |.+++.+++ +    ++++|+||||.+++   +++|.++|+++|+++++|++|....   .+ ..+...+   ..+++.|
T Consensus       114 ~~l~~~i~~~~~~~v~i~~~~~~~G~~~~---~~~i~~~a~~~~~~li~D~~~~~g~---~~-~~~~~~~---~d~~~~s  183 (356)
T cd06451         114 EEIAEALEQHDIKAVTLTHNETSTGVLNP---LEGIGALAKKHDALLIVDAVSSLGG---EP-FRMDEWG---VDVAYTG  183 (356)
T ss_pred             HHHHHHHhccCCCEEEEeccCCCcccccC---HHHHHHHHHhcCCEEEEeeehhccC---cc-ccccccC---ccEEEec
Confidence            456666654 3    67889999999988   7778889999999999999876321   11 1111121   2256778


Q ss_pred             cccccccCCceEEEEEeeCCCCCcchhhHHHHHHH---Hh-----------------hhcCCCCchHHHHHHHHHhhchH
Q 042445           77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKI---FL-----------------NISSDPATFIQGAVPQILEKTEE  136 (246)
Q Consensus        77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~---~~-----------------~~~~~~~~~~q~~~~~~l~~~~~  136 (246)
                      .+|.++.|. ++||++.++        ++++.+..   ..                 ....+++...+.++..++..-..
T Consensus       184 ~~K~l~~p~-g~G~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~  254 (356)
T cd06451         184 SQKALGAPP-GLGPIAFSE--------RALERIKKKTKPKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLILE  254 (356)
T ss_pred             CchhccCCC-CcceeEECH--------HHHHHHHhcCCCCceeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHHHHH
Confidence            899987653 589999988        77776653   00                 01113445555666666654334


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCC--CceEEEEEeccccccCCCChHHHHHHHHHhc-CeEEecCCCcCC
Q 042445          137 EFFSKIIDILRETADKCCDRLKEIPCITCPKKPE--GSMFVMVKLNYSLLEGINSDMEFALKLAKEE-SVIVLPGITVGL  213 (246)
Q Consensus       137 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-gi~v~pg~~f~~  213 (246)
                      ..+++..+..+++++.+.+.|+++ ++.....+.  .+.++|+.++...     +..++ .+.|.++ ||.+.+|..+..
T Consensus       255 ~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~L~~~~gI~~~~g~~~~~  327 (356)
T cd06451         255 EGLENRWARHRRLAKALREGLEAL-GLKLLAKPELRSPTVTAVLVPEGV-----DGDEV-VRRLMKRYNIEIAGGLGPTA  327 (356)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHc-CCeeccCcccCCCceEEEECCCCC-----CHHHH-HHHHHHhCCEEEeccccccc
Confidence            456777888889999999999887 565332222  4555666665321     24444 4455565 999999886655


Q ss_pred             CCeEEEEeec--ChHHHHHHHHHHHHHHH
Q 042445          214 KDWLRITFAV--EPSALENGLGRMKAFYD  240 (246)
Q Consensus       214 ~~~iRls~~~--~~~~l~~~~~~l~~~~~  240 (246)
                      ++++|+|++.  ++++++++++.|.++++
T Consensus       328 ~~~iRis~~~~~~~e~v~~~~~~l~~~~~  356 (356)
T cd06451         328 GKVFRIGHMGEATREDVLGVLSALEEALK  356 (356)
T ss_pred             CCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence            7899999984  78999999999988763

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=99.84  E-value=1.6e-19  Score=155.08  Aligned_cols=205  Identities=15%  Similarity=0.158  Sum_probs=142.3

Q ss_pred             cCCCccCC-ChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeC
Q 042445           17 VFHVGSGF-SGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSD   95 (246)
Q Consensus        17 ~NPtG~~~-~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~   95 (246)
                      ++|+|..+ |.+++++|.++|++||+++|+||+|.++.+.+.. .+...++....   +.+|||.++ +|+|+||+++++
T Consensus       208 q~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~-~a~~~~~~~pD---i~t~gK~l~-~G~pigav~~~~  282 (421)
T PRK09792        208 QGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKL-FAMDHYADKPD---LMTMAKSLA-GGMPLSGVVGNA  282 (421)
T ss_pred             cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCch-hHHHhcCCCCc---EEEeehhhc-CCCceEEEEEcH
Confidence            58999865 8999999999999999999999999999877653 33333422111   688999975 889999999988


Q ss_pred             CCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhh-cCCCCccccCCCC-
Q 042445           96 PNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADKCCDRLK-EIPCITCPKKPEG-  171 (246)
Q Consensus        96 ~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~-~~~~~~~~~~~~~-  171 (246)
                              ++++.+... ...+++.|++.++++.+.++... .+++++.+ .+.++.....+.|. ++|.   +..+.| 
T Consensus       283 --------~i~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~~~~~~~-~~g~~l~~~l~~l~~~~p~---v~~vrG~  350 (421)
T PRK09792        283 --------NIMDAPAPGGLGGTYAGNPLAVAAAHAVLNIIDKESLCERAN-QLGQRLKNTLIDAKESVPA---IAAVRGL  350 (421)
T ss_pred             --------HHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHhCCC---cceeccc
Confidence                    887776543 33455889999997777766432 24444444 33444433334443 3553   335677 


Q ss_pred             ceEEEEEeccccc-cCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHH
Q 042445          172 SMFVMVKLNYSLL-EGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYD  240 (246)
Q Consensus       172 g~~~~~~~~~~~~-~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~  240 (246)
                      |+++|++++...- .........+...+.++||.+.+...  ..+.+||.++.  +++++++++++|.++++
T Consensus       351 Gl~~~ie~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~g~--~~~~irl~P~l~i~~~ei~~~~~~l~~~l~  420 (421)
T PRK09792        351 GSMIAAEFNDPQTGEPSAAIAQKIQQRALAQGLLLLTCGA--YGNVIRFLYPLTIPDAQFDAAMKILQDALS  420 (421)
T ss_pred             ceEEEEEecCCccCCcchHHHHHHHHHHHHCCcEEeecCC--CCCEEEEeCCCcCCHHHHHHHHHHHHHHHh
Confidence            9999999964310 00001234455667789999864221  16899999774  89999999999999875

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=99.84  E-value=1.1e-19  Score=156.57  Aligned_cols=207  Identities=13%  Similarity=0.117  Sum_probs=141.5

Q ss_pred             cCCcCCCccCCC-hhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEE
Q 042445           14 DFQVFHVGSGFS-GSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLV   92 (246)
Q Consensus        14 ~~p~NPtG~~~~-~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~   92 (246)
                      ..|+| +|.+++ .+++++|.++|++||+++|+||+|.++.++.........+.+  +   +.+|||.++ +|+|+||++
T Consensus       203 p~~~~-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~g~~~~~~~~~~~p--D---i~t~sK~l~-~G~pig~v~  275 (423)
T TIGR00713       203 PVAGN-MGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRVALGGAQEYFGVEP--D---LTTLGKIIG-GGLPVGAFG  275 (423)
T ss_pred             CCCCC-CCCcCCCHHHHHHHHHHHHHhCCEEEEEccccccccCcchhHHHhCCCc--c---hhhhhhhhc-CCCceeeee
Confidence            47878 788887 589999999999999999999999988543221111222222  2   447999987 899999999


Q ss_pred             eeCCCCCcchhhHHHHHHHH----hhhcCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhhcCCCCcccc
Q 042445           93 TSDPNGILQDSGIVDSIKIF----LNISSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADKCCDRLKEIPCITCPK  167 (246)
Q Consensus        93 ~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~  167 (246)
                      +++        ++++.+...    ...+++.+++++.++.+.|+... +.+.++.++.....++.+.+.+++. ++...+
T Consensus       276 ~~~--------~i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v  346 (423)
T TIGR00713       276 GRR--------EIMERLAPEGPVYQAGTLSGNPLAMAAGLATLKLLDEEGVYTELDELAKRLAEGLSEVLEDT-GIPHTV  346 (423)
T ss_pred             EHH--------HHHHhhCcCCCeeeccCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhc-CCCeEE
Confidence            998        888888632    22345789999999999988433 2467777777777778788777776 333112


Q ss_pred             CCCCceEEEEEeccccccC-----CCCh--HHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHHHH
Q 042445          168 KPEGSMFVMVKLNYSLLEG-----INSD--MEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYD  240 (246)
Q Consensus       168 ~~~~g~~~~~~~~~~~~~~-----~~~~--~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~~  240 (246)
                      ...|+++ .+.+......+     ..+.  ...+...+.++||.+.++ .|   +.+|+++..+++++++++++|.++++
T Consensus       347 ~~~g~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~-~~---~~~~l~~~~t~~~i~~~~~~l~~~l~  421 (423)
T TIGR00713       347 NRVGSMF-SLFFTEEEVTNYADAKKSDTELFAKFFHEMLDKGVFLPPS-QF---EACFLSAAHTEEDIENTIEAAEEVFA  421 (423)
T ss_pred             EeeccEE-EEEEecCCCCChhhhhcccHHHHHHHHHHHHHCCeEEecC-Cc---cceeeECCCCHHHHHHHHHHHHHHHh
Confidence            3333333 33343211000     0011  123444566799998754 22   45889888899999999999999986


Q ss_pred             H
Q 042445          241 R  241 (246)
Q Consensus       241 ~  241 (246)
                      +
T Consensus       422 ~  422 (423)
T TIGR00713       422 E  422 (423)
T ss_pred             h
Confidence            5

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=99.84  E-value=2.5e-19  Score=152.96  Aligned_cols=214  Identities=14%  Similarity=0.185  Sum_probs=144.8

Q ss_pred             hhhhhhccc---cccCCcCCCccCC--ChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            3 LINQDITRE---FSDFQVFHVGSGF--SGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         3 ~~~~~~~~~---~~~~p~NPtG~~~--~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      .+++.+.++   ++..|.|++|-+.  +.+++++|.++|++||+++|.||+|.++...|..+ ....++-.   ..+.++
T Consensus       171 ~l~~~l~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~~~-a~~~~gv~---pDi~t~  246 (397)
T TIGR03246       171 AAKALISDKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELY-AYMHYGVT---PDILTS  246 (397)
T ss_pred             HHHHHhccCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccccch-hhhhcCCC---CCEEEe
Confidence            444444433   5555656555433  78999999999999999999999998886666433 22222211   223478


Q ss_pred             ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDR  156 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  156 (246)
                      ||.++ .|+++||+++++        ++++.+... ...+++.+|+++.++.+.|+...   ..+..+.++++.+.+.+.
T Consensus       247 ~K~lg-gG~pigav~~~~--------~i~~~~~~~~~~~t~~~~p~~~aaa~a~l~~~~---~~~l~~~~~~~~~~l~~~  314 (397)
T TIGR03246       247 AKALG-GGFPIGAMLTTT--------EIAAHLKVGTHGTTYGGNPLACAVAGKVLDLVN---TPELLAGVKQRHDLFVDG  314 (397)
T ss_pred             ehhhh-CCcceeEEEEcH--------HHHHhccCCCcCCCCCCCHHHHHHHHHHHHHHh---hccHHHHHHHHHHHHHHH
Confidence            99986 789999999998        888877644 33455789999999988887422   234567777888888888


Q ss_pred             hhcCC---CCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHH
Q 042445          157 LKEIP---CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENG  231 (246)
Q Consensus       157 L~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~  231 (246)
                      |+++.   ++...+.+. |.++.+.+....    ......+...|.++||.+.+..    .+++|++++  .++++++++
T Consensus       315 L~~l~~~~~~~~~vrg~-G~~~~i~~~~~~----~~~~~~~~~~l~~~Gv~~~~~g----~~~lR~~p~~~~t~~~i~~~  385 (397)
T TIGR03246       315 LEKINARYNVFSEIRGK-GLLIGAVLTEAY----QGKAKQFVNAAAEEGVIALIAG----PNVVRFAPSLVISDDDIDEG  385 (397)
T ss_pred             HHHHHhcCCCeEeeecC-ceEEEEEEcCch----hhHHHHHHHHHHHCCeEEeecC----CCEEEEeCCCCCCHHHHHHH
Confidence            87642   111112223 444455554310    0123444556778899987732    478999765  499999999


Q ss_pred             HHHHHHHHHH
Q 042445          232 LGRMKAFYDR  241 (246)
Q Consensus       232 ~~~l~~~~~~  241 (246)
                      +++|.+++++
T Consensus       386 ~~~l~~~l~~  395 (397)
T TIGR03246       386 LARFERAIEQ  395 (397)
T ss_pred             HHHHHHHHHH
Confidence            9999999875

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=99.83  E-value=4.7e-19  Score=151.81  Aligned_cols=214  Identities=15%  Similarity=0.120  Sum_probs=144.7

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.+.++    ++++|+||||..++   +++|.++|+++|+++++|++|+.....    ..+..+   +..+++.|+
T Consensus       150 ~~l~~~i~~~~~lv~~~~~~~~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~~g~~~----~~~~~~---~~d~~~~s~  219 (403)
T TIGR01979       150 DDLEKLLTEKTKLVAITHVSNVLGTVNP---VEEIAKLAHQVGAKVLVDGAQAVPHMP----VDVQAL---DCDFYVFSG  219 (403)
T ss_pred             HHHHHHhccCCeEEEEEcccccccccCC---HHHHHHHHHHcCCEEEEEchhhcCccc----cCcccc---CCCEEEEec
Confidence            3455555543    78899999999998   788999999999999999998753311    111222   244888999


Q ss_pred             ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHh---------------------hh-cCCCCchHHHHHHHHHhhch
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFL---------------------NI-SSDPATFIQGAVPQILEKTE  135 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~---------------------~~-~~~~~~~~q~~~~~~l~~~~  135 (246)
                      +|.+|.+|  +|++++++        ++++.+....                     .+ ..+.+.....++..+++...
T Consensus       220 ~K~~gp~G--~g~l~~~~--------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~  289 (403)
T TIGR01979       220 HKMYGPTG--IGVLYGKE--------ELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLE  289 (403)
T ss_pred             ccccCCCC--ceEEEEch--------HHHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHH
Confidence            99987666  89999887        6665543110                     01 11344555566666665322


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCC---CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCc-
Q 042445          136 EEFFSKIIDILRETADKCCDRLKEIPCITCPKKPE---GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITV-  211 (246)
Q Consensus       136 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f-  211 (246)
                      +...++.+++..+.++.+.+.|++++++..+.++.   .+.++.+.++..       +...+.+.|.++||.+.+|..| 
T Consensus       290 ~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~~~~~~v~~~~~~~-------~~~~~~~~L~~~gI~v~~g~~~~  362 (403)
T TIGR01979       290 AIGLENIEAHEHELTAYALERLGEIPGLRIYGPRDAEDRGGIISFNVEGV-------HPHDVGTILDEEGIAVRSGHHCA  362 (403)
T ss_pred             HhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccccCceEEEEeCCc-------CHHHHHHHHhhCCEEEcchhhhh
Confidence            22356677888888889999998887776432221   134444556432       2334566788999999987643 


Q ss_pred             -------CCCCeEEEEeec--ChHHHHHHHHHHHHHHHHH
Q 042445          212 -------GLKDWLRITFAV--EPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       212 -------~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~  242 (246)
                             +.++++|+|++.  ++++++++++.|++.++.+
T Consensus       363 ~~~~~~~~~~~~iRiS~~~~~t~~di~~l~~~l~~~~~~~  402 (403)
T TIGR01979       363 QPLMRRFGVPATCRASFYIYNTEEDIDALVEALKKVRKFF  402 (403)
T ss_pred             HHHHHHhCCCCEEEEEeccCCCHHHHHHHHHHHHHHHHHh
Confidence                   336899999994  8889999999998877653

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=99.83  E-value=5.1e-19  Score=151.09  Aligned_cols=207  Identities=13%  Similarity=0.138  Sum_probs=146.9

Q ss_pred             cccCCcCCCccCCC--hhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEE
Q 042445           12 FSDFQVFHVGSGFS--GSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLG   89 (246)
Q Consensus        12 ~~~~p~NPtG~~~~--~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G   89 (246)
                      ++..|.+++|-+++  .+++++|.++|++||+++|+||+|.++...+..+    .....+..+.+.||||.++ +|+|+|
T Consensus       191 vi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~----a~~~~~~~pdi~t~~K~l~-~G~pig  265 (408)
T PRK04612        191 VMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLF----AHWQEQVTPDIVTLAKALG-GGFPIG  265 (408)
T ss_pred             EEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCchh----hhhhcCCCCCEEEEcchhc-CCCceE
Confidence            78888888887766  5699999999999999999999999877665322    1122334567889999986 789999


Q ss_pred             EEEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc----CCCCc
Q 042445           90 WLVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKE----IPCIT  164 (246)
Q Consensus        90 ~i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~  164 (246)
                      |+++++        ++.+.+... ...+++.+|+.+.++.+.|+...+   ....+..+++.+.+.+.|++    .+-+.
T Consensus       266 a~~~~~--------~~~~~~~~~~~~~t~~~~p~~~aaa~a~L~~~~~---~~l~~~~~~~g~~l~~~l~~l~~~~~~i~  334 (408)
T PRK04612        266 AMLAGP--------KVAETMQFGAHGTTFGGNPLAAAVARVALRKLAS---PQIAANVARQSAALRAGLEALNAEFGVFA  334 (408)
T ss_pred             EEEECH--------HHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhhCCCee
Confidence            999988        877777653 334557899999999999985322   23444455555555555544    32222


Q ss_pred             cccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHH
Q 042445          165 CPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       165 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~  242 (246)
                       .+... |+++-+.+....    ......+.+.+.++||.+.|..    .+.+|+....  +++++++++++|.+++++.
T Consensus       335 -~vrg~-Gl~~~i~~~~~~----~~~a~~i~~~l~~~Gvlv~~~g----~~~lRl~Ppl~it~eeid~~l~~l~~~l~~~  404 (408)
T PRK04612        335 -QVRGR-GLMLGAVLAPAH----AGQAGAILDLAAEHGLLLLQAG----PDVLRFVPALNLTDAELADGLARLRLALADY  404 (408)
T ss_pred             -eeecc-ceEEEEEecCch----hhHHHHHHHHHHHCCeEEeeCC----CCEEEEcCCccCCHHHHHHHHHHHHHHHHHH
Confidence             22333 566666664210    0134455667889999998743    4889998764  8999999999999999875


Q ss_pred             hh
Q 042445          243 AE  244 (246)
Q Consensus       243 ~~  244 (246)
                      ..
T Consensus       405 ~~  406 (408)
T PRK04612        405 VA  406 (408)
T ss_pred             hh
Confidence            43

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=99.83  E-value=5e-19  Score=149.01  Aligned_cols=201  Identities=19%  Similarity=0.177  Sum_probs=141.5

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccccccc-ccCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRG-IVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~g~r~G~   90 (246)
                      ++++++||||...+   +++|.++|++||+++|+|++++...   .++ .+.   ..+..+++.|++|.+ +++|  +||
T Consensus       130 ~~~~~~~~~G~~~~---~~~i~~l~~~~~~~livD~~~s~g~---~~~-~~~---~~~~d~~~~s~~K~l~~~~G--~g~  197 (355)
T TIGR03301       130 ATVHHETTTGILNP---LEAIAKVARSHGAVLIVDAMSSFGA---IPI-DIE---ELDVDALIASANKCLEGVPG--FGF  197 (355)
T ss_pred             EEEecCCcccchhH---HHHHHHHHHHcCCEEEEEeccccCC---ccc-chh---hcCccEEEecCCcccccCCc--eeE
Confidence            56778899999887   7899999999999999999776432   111 222   223447899999975 5566  699


Q ss_pred             EEeeCCCCCcchhhHHHHHHHH-h-----------------hhcCCCCchHHHHHHHHHhhchHH-HHHHHHHHHHHHHH
Q 042445           91 LVTSDPNGILQDSGIVDSIKIF-L-----------------NISSDPATFIQGAVPQILEKTEEE-FFSKIIDILRETAD  151 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~-~-----------------~~~~~~~~~~q~~~~~~l~~~~~~-~~~~~~~~~~~~~~  151 (246)
                      +++++        ++++.+... .                 ...++++...+.++..++....+. ++.+..++++++++
T Consensus       198 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~  269 (355)
T TIGR03301       198 VIARR--------DLLEASAGNARSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELEAEGGVPARIARYRRNRE  269 (355)
T ss_pred             EEECH--------HHHHHhhCCCCCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            99998        777776521 0                 011246777777777777643222 36778888899999


Q ss_pred             HHHHHhhcCCCCccccCC--CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHH
Q 042445          152 KCCDRLKEIPCITCPKKP--EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSA  227 (246)
Q Consensus       152 ~l~~~L~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~  227 (246)
                      .+.+.|+++ |+..+..+  .++.++|++++...    ..+.+.+.+.+.++||.+.+|..+. .+++|+++..  ++++
T Consensus       270 ~~~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~gi~i~~~~~~~-~~~iRis~~~~~~~~~  343 (355)
T TIGR03301       270 LLVDGLRAL-GFQPLLPERWQSPIIVSFLYPDDP----DFDFDDFYQELKERGFVIYPGKLTL-ADTFRIGTIGEIDAAD  343 (355)
T ss_pred             HHHHHHHHc-CCeeecCCCCCCCcEEEEECCCCC----cchHHHHHHHHHHCCEEEECCcccc-ccEEEEecCCCCCHHH
Confidence            999999887 55532222  34566777776421    0133456677888999999987554 3899999853  8899


Q ss_pred             HHHHHHHHHHH
Q 042445          228 LENGLGRMKAF  238 (246)
Q Consensus       228 l~~~~~~l~~~  238 (246)
                      ++++++.|+++
T Consensus       344 i~~~~~~l~~~  354 (355)
T TIGR03301       344 IERLLEAIKDA  354 (355)
T ss_pred             HHHHHHHHHhh
Confidence            99999999865

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>PLN02624 ornithine-delta-aminotransferase

Probab=99.83  E-value=3.8e-19  Score=154.60  Aligned_cols=210  Identities=13%  Similarity=0.098  Sum_probs=139.1

Q ss_pred             cccCCcCCCccCCChh-hHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGS-FVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~-~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      ++..++||+|.+++++ ++++|.++|++||+++|+||+|.++...|..+ .....+....   +.++||.++++++++|+
T Consensus       229 iiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG~~~-a~~~~~i~pD---iv~lsK~lggG~~piga  304 (474)
T PLN02624        229 LFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKML-ACDWEEVRPD---VVILGKALGGGVIPVSA  304 (474)
T ss_pred             EECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCcchh-hHHhcCCCCC---EEEecccccCCCCccee
Confidence            6777789999988766 69999999999999999999999876665432 2111221222   34468999988899999


Q ss_pred             EEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc----CCCCcc
Q 042445           91 LVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKE----IPCITC  165 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~  165 (246)
                      +++++        ++++.+... ...+++.+++.+.++.+.|+...+.   ...+...++.+.+.+.|++    ++....
T Consensus       305 v~~~~--------~i~~~~~~~~~~~T~~g~pl~~aaa~aaLe~l~~~---~l~~~~~~~~~~l~~~L~~l~~~~~~~i~  373 (474)
T PLN02624        305 VLADK--------DVMLCIKPGEHGSTFGGNPLASAVAMAALQVVQDE---KLAERSAKLGQELRDQLQKIQKQFPKLIK  373 (474)
T ss_pred             eeecH--------HHHhHhccCCcCCCCCCCHHHHHHHHHHHHHHHhc---hHHHHHHHHHHHHHHHHHHHHHhCCCceE
Confidence            99987        777766543 3344478999999999998743221   1222333334444444433    332111


Q ss_pred             ccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHHHHHHh
Q 042445          166 PKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       166 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~~~~~  243 (246)
                      .+.+. |.++.+.++.... +. .....+.+.|.++||.+.|+.    .+++||++.  .+++++++++++|.+++++..
T Consensus       374 ~vrg~-G~~~~i~l~~~~~-~~-~~a~~~~~~L~e~GV~v~p~~----~~~lR~~p~l~~t~e~id~~l~~L~~~l~~~~  446 (474)
T PLN02624        374 EVRGR-GLLNAVVLNSPKL-GP-VSAYDVCLKLKERGLLAKPTH----DTIIRLAPPLSISEDELQECSKALSDVLEHDL  446 (474)
T ss_pred             EEEee-EEEEEEEecCCCc-Ch-HHHHHHHHHHHhCCeEEecCC----CCEEEEECCccCCHHHHHHHHHHHHHHHHHHH
Confidence            23344 4444455643210 00 123334455788999999864    688999975  489999999999999987654

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=99.83  E-value=1.3e-18  Score=149.14  Aligned_cols=215  Identities=13%  Similarity=0.066  Sum_probs=145.9

Q ss_pred             hhhhhhhc-cc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEcccc-CCcccCCCCCccccccCCcccEEEEc
Q 042445            2 ELINQDIT-RE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVY-GHLAFGNTPFVSMGVFGSIVPLLTLG   75 (246)
Q Consensus         2 e~~~~~~~-~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y-~~~~~~~~~~~~~~~~~~~~~~i~~~   75 (246)
                      |.+++.++ ++    ++++|+||+  .   .++++|.++|+++|+++|+|++| .++.+.+....++.   . .. ++++
T Consensus       151 ~~l~~~i~~~~~~~v~~~~~~~~~--~---~~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~---~-~d-v~~~  220 (402)
T cd00378         151 DALEKMALEFKPKLIVAGASAYPR--P---IDFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLP---G-AD-VVTT  220 (402)
T ss_pred             HHHHHHHHhCCCCEEEecCcccCC--C---cCHHHHHHHHHhcCCEEEEEccchhhhhhcccCCCccc---C-Cc-EEEe
Confidence            44555553 22    667777764  2   24889999999999999999996 44444442222222   1 12 6899


Q ss_pred             ccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhh-cCCCCc-hHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 042445           76 SISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNI-SSDPAT-FIQGAVPQILEKTEEEFFSKIIDILRETADKC  153 (246)
Q Consensus        76 s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~-~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l  153 (246)
                      |+||.+  +|.|.||++++++       ++++.+...... ..+.+. ....++..++......+..+.++.++++++.+
T Consensus       221 s~sK~l--~G~~gg~i~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l  291 (402)
T cd00378         221 TTHKTL--RGPRGGLILTRKG-------ELAKKINSAVFPGLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKAL  291 (402)
T ss_pred             ccccCC--CCCCceEEEeccH-------HHHHHHHHHhCccccCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            999985  7889999999764       777777665432 212222 23333333443222235677888899999999


Q ss_pred             HHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcC------CCCeEEEEeec----
Q 042445          154 CDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG------LKDWLRITFAV----  223 (246)
Q Consensus       154 ~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~------~~~~iRls~~~----  223 (246)
                      .+.|+++ |+..+..|.+++++|++++...     .+.+.+.++|+++||.+.++..+.      .++++|+++..    
T Consensus       292 ~~~L~~~-g~~~~~~~~~~~~v~v~~~~~~-----~~~~~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~~~~~~  365 (402)
T cd00378         292 AEALKER-GFKVVSGGTDNHLVLVDLRPKG-----ITGKAAEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTR  365 (402)
T ss_pred             HHHHHhC-CCeEeecCCCCeEEEEeCCccC-----CCHHHHHHHHHHcCcEEcCCcCCCCCCCCCCCCeeEecCHHHHHh
Confidence            9999987 6664335678999999887422     134566778889999998643221      24689999874    


Q ss_pred             --ChHHHHHHHHHHHHHHHH
Q 042445          224 --EPSALENGLGRMKAFYDR  241 (246)
Q Consensus       224 --~~~~l~~~~~~l~~~~~~  241 (246)
                        ++++++++++.|.+++.+
T Consensus       366 ~~~~~di~~~~~~l~~~~~~  385 (402)
T cd00378         366 GMGEEEMEEIADFIARALKD  385 (402)
T ss_pred             CCCHHHHHHHHHHHHHHHhc
Confidence              488999999999998764

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=99.83  E-value=7.7e-19  Score=150.62  Aligned_cols=210  Identities=11%  Similarity=0.083  Sum_probs=143.6

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.++++    ++++|+||||.+++   +++|.++|+++|+++++|++|+.+...    ..+...   +.-+++.|+
T Consensus       155 ~~l~~~i~~~t~lv~l~~~~n~tG~~~~---~~~i~~~~~~~~~~vivD~a~~~g~~~----~~~~~~---~~D~~~~s~  224 (406)
T PRK09295        155 ETLPALFDERTRLLAITHVSNVLGTENP---LAEMIALAHQHGAKVLVDGAQAVMHHP----VDVQAL---DCDFYVFSG  224 (406)
T ss_pred             HHHHHhcCCCcEEEEEecchhcccccCC---HHHHHHHHHHcCCEEEEEcccccCccc----cCchhc---CCCEEEeeh
Confidence            3455555543    78899999999998   788899999999999999999754321    122222   233888999


Q ss_pred             ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHH----------------------hh-hcCCCCchHHHHHHHHHhhc
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIF----------------------LN-ISSDPATFIQGAVPQILEKT  134 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~----------------------~~-~~~~~~~~~q~~~~~~l~~~  134 (246)
                      +|.+|.+|  +||+++++        ++++.+...                      .. ...+.+.....++..+++..
T Consensus       225 ~K~~gp~G--~G~l~~~~--------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~  294 (406)
T PRK09295        225 HKLYGPTG--IGILYVKE--------ALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYV  294 (406)
T ss_pred             hhccCCCC--cEEEEEch--------HhHhhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHH
Confidence            99887676  79999987        655544211                      00 11145666667777777643


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC-CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC
Q 042445          135 EEEFFSKIIDILRETADKCCDRLKEIPCITCPKKP-EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL  213 (246)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~  213 (246)
                      .+.-++..+++.++.++.+.+.|++++++..+.+. ..+. +.+.++..      +..+ +...|.++||.++.|..|..
T Consensus       295 ~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~i-v~~~~~~~------~~~~-~~~~L~~~gI~v~~g~~c~~  366 (406)
T PRK09295        295 SALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGV-IAFNLGKH------HAYD-VGSFLDNYGIAVRTGHHCAM  366 (406)
T ss_pred             HHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCceE-EEEEECCc------CHHH-HHHHHHhCCeEEeccccchH
Confidence            23345667778888889999999888777643321 2333 33345432      2344 45578899999999886642


Q ss_pred             --------CCeEEEEeec--ChHHHHHHHHHHHHHH
Q 042445          214 --------KDWLRITFAV--EPSALENGLGRMKAFY  239 (246)
Q Consensus       214 --------~~~iRls~~~--~~~~l~~~~~~l~~~~  239 (246)
                              ++.+|+|++.  ++++++..++.|++..
T Consensus       367 ~~~~~~~~~~~iRiS~~~ynt~~did~l~~~l~~i~  402 (406)
T PRK09295        367 PLMAYYNVPAMCRASLAMYNTHEEVDRLVAGLQRIH  402 (406)
T ss_pred             HHHHHHCCCCEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence                    4689999994  8899999999988764

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=99.83  E-value=9.2e-19  Score=150.32  Aligned_cols=201  Identities=18%  Similarity=0.193  Sum_probs=142.1

Q ss_pred             CCCcc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCC
Q 042445           18 FHVGS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDP   96 (246)
Q Consensus        18 NPtG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~   96 (246)
                      ++.|. +++.+++++|.++|++||+++|+||+|.++.+.+..+ +...++....   +.++||.++ +|+|+||+++++ 
T Consensus       209 ~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~~~-~~~~~~~~pD---iv~~sK~l~-~G~pigav~~~~-  282 (421)
T PRK06777        209 GEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLF-AMEYYDVKPD---LITMAKSLG-GGMPISAVVGRA-  282 (421)
T ss_pred             CCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCchh-hhhhcCCCCC---EEeeehhhc-CCCceEEEEEcH-
Confidence            56675 6889999999999999999999999999987766432 3333332223   337999987 899999999998 


Q ss_pred             CCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc----CCCCccccCCCC
Q 042445           97 NGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKE----IPCITCPKKPEG  171 (246)
Q Consensus        97 ~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~  171 (246)
                             ++++.+... ...+++.|++++.++.+.|+...+   +...+..+++.+.+.+.|++    .+.+. .+.+.|
T Consensus       283 -------~i~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~---~~l~~~~~~~g~~l~~~L~~l~~~~~~i~-~vrg~G  351 (421)
T PRK06777        283 -------EVMDAPAPGGLGGTYAGNPLAVAAALAVLDVIAE---EKLCQRALILGAHLVEVLEKAKASCPAIV-DIRARG  351 (421)
T ss_pred             -------HHHhccCCCCCCCCCCcCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHhCCCeE-EecCce
Confidence                   888877644 334558899999999999974322   34555666666666666655    34343 356677


Q ss_pred             ceEEEEEeccccccCCCChH---HHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHHHH
Q 042445          172 SMFVMVKLNYSLLEGINSDM---EFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAFYD  240 (246)
Q Consensus       172 g~~~~~~~~~~~~~~~~~~~---~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~~  240 (246)
                      .++.+ .+....- +. .+.   ..+...+.++||.+.|+..|  .+++||++.  .+++++++++++|.+++.
T Consensus       352 ~~~~i-~~~~~~~-~~-~~~~~~~~l~~~~~~~Gv~i~~~~~~--g~~lr~~ppl~i~~~~i~~~~~~l~~~l~  420 (421)
T PRK06777        352 SMVAV-EFNDPQT-GK-PSPEFTRQYQRQALEEGLLLLSCGVH--GNVIRFLYPLTIPDAQFSKALNILTRLLA  420 (421)
T ss_pred             EEEEE-EEecCcc-CC-ccHHHHHHHHHHHHhCCeEEeecCCC--CCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence            66653 3432110 00 122   23333466899999998765  479999986  499999999999998874

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=99.83  E-value=1.2e-18  Score=147.10  Aligned_cols=213  Identities=19%  Similarity=0.235  Sum_probs=142.2

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.++++    ++++|+||+|   +..++++|+++|+++|+++|+|++|.......    ++    .....++++|+
T Consensus       127 ~~l~~~i~~~tklv~le~P~NP~~---~~~dl~~I~~la~~~g~~lIvD~t~~~~~~~~----p~----~~g~di~i~S~  195 (366)
T PRK08247        127 KAIEQAITPNTKAIFIETPTNPLM---QETDIAAIAKIAKKHGLLLIVDNTFYTPVLQR----PL----EEGADIVIHSA  195 (366)
T ss_pred             HHHHHhcccCceEEEEECCCCCCC---cHHHHHHHHHHHHHcCCEEEEECCCccccccC----ch----hcCCcEEEeec
Confidence            4455666544    8889999975   45779999999999999999999996433221    11    12245999999


Q ss_pred             ccccccC-CceEEEEEeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445           78 SKRGIVP-GLRLGWLVTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD  155 (246)
Q Consensus        78 sK~~~~~-g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  155 (246)
                      ||.++++ +++.||+++++.       ++.+.++..+.. +..++++.+.++.+.++.     +..+.++.+++++.+.+
T Consensus       196 sK~~~g~~d~~~G~iv~~~~-------~l~~~~~~~~~~~g~~~s~~~a~l~~~~l~t-----l~~r~~~~~~~a~~l~~  263 (366)
T PRK08247        196 TKYLGGHNDVLAGLVVAKGQ-------ELCERLAYYQNAAGAVLSPFDSWLLIRGMKT-----LALRMRQHEENAKAIAA  263 (366)
T ss_pred             ceeccCCCceeeeEEecChH-------HHHHHHHHHHHhcCCCCChHHHHHHHhccCc-----HHHHHHHHHHHHHHHHH
Confidence            9998764 579999998742       777777765443 346788888887777763     44555567999999999


Q ss_pred             HhhcCCCCccccCC-CCceEEEEEeccccc-----cCCCChHHHHHHHHHhcCeEEecCCCcCC-------------CCe
Q 042445          156 RLKEIPCITCPKKP-EGSMFVMVKLNYSLL-----EGINSDMEFALKLAKEESVIVLPGITVGL-------------KDW  216 (246)
Q Consensus       156 ~L~~~~~~~~~~~~-~~g~~~~~~~~~~~~-----~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-------------~~~  216 (246)
                      .|+++|++..+..| .||+|.| .++....     +.. +...++..+....++.+.|+..++.             ++-
T Consensus       264 ~L~~~p~v~~v~~P~~gg~~sf-~~~~~~~~~~~~~~l-~~~~~~~slg~~~sl~~~p~~~~~~~~~~~~r~~~gi~~~~  341 (366)
T PRK08247        264 FLNEQPGVTDVLYPGRGGMLSF-RLQDEEWVNPFLKSL-KLITFAESLGGVESFITYPATQTHADIPEEIRIANGVCNRL  341 (366)
T ss_pred             HHHhCCCeeEEecCCcCcEEEE-EECCHHHHHHHHHcC-CcceEccCCCCCceEEECCcccccccCCHHHHHhcCCCCCe
Confidence            99998888755555 7888887 5642100     000 0111122222345666777754421             468


Q ss_pred             EEEEeecChHHHHHHHHHHHHHHHH
Q 042445          217 LRITFAVEPSALENGLGRMKAFYDR  241 (246)
Q Consensus       217 iRls~~~~~~~l~~~~~~l~~~~~~  241 (246)
                      +|||++.++  .+..++.|.+++++
T Consensus       342 ~R~svGlE~--~~dl~~dl~~al~~  364 (366)
T PRK08247        342 LRFSVGIEN--VEDLIADLKQAFKQ  364 (366)
T ss_pred             EEEEeccCC--HHHHHHHHHHHHhh
Confidence            999999743  34556666666654

>PRK06460 hypothetical protein; Provisional

Probab=99.82  E-value=3.8e-18  Score=144.45  Aligned_cols=134  Identities=12%  Similarity=0.076  Sum_probs=98.0

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccC-CceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVP-GLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~-g~r~G~   90 (246)
                      ++++||||||.+++.   ++|.++|+++|+++|+||+|.....    ..+   +. .+..+++.|+||.|++. |.+.||
T Consensus       135 ~l~sp~NPtG~v~d~---~~I~~la~~~g~~vivDea~~~~~~----~~~---l~-~~~divv~S~sK~l~G~~~~~~G~  203 (376)
T PRK06460        135 FVENITNPLLRVVDI---TELSKVCKENGSILIVDATFSTPIN----QKP---LE-LGADIVVHSASKFLAGHNDVIAGL  203 (376)
T ss_pred             EEECCCCCCCcccCH---HHHHHHHHHcCCEEEEECCcCcccc----CCh---hh-cCCCEEEeecceeccCCCCceEEE
Confidence            889999999999994   5788889999999999999975321    111   11 12458999999998654 378999


Q ss_pred             EEeeCCCCCcchhhHHHHHHHHhhhc-CCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445           91 LVTSDPNGILQDSGIVDSIKIFLNIS-SDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKP  169 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~  169 (246)
                      +++++        ++++.++.....+ .+.++.   .+..++.  ..++++.+.+++.++++.+.+.|++.|.+..+..|
T Consensus       204 ~~~~~--------~l~~~l~~~~~~~g~~~~~~---~a~~~l~--~~~~l~~r~~~~~~n~~~l~~~L~~~p~v~~v~yp  270 (376)
T PRK06460        204 AAGYG--------KLLNVIDQMRRTLGTSLDPH---AAYLTLR--GIKTLKIRMDVINRNAEQIAEFLEGHPKVVKVYYP  270 (376)
T ss_pred             EecCH--------HHHHHHHHHHHhcCCCCCHH---HHHHHHh--chhhHHHHHHHHHHHHHHHHHHHHcCCCccEEECC
Confidence            99987        8888888765433 233442   2333333  34678888889999999999999988776544444

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=99.82  E-value=2.8e-18  Score=147.92  Aligned_cols=210  Identities=17%  Similarity=0.170  Sum_probs=139.7

Q ss_pred             cccCCc-CCCccCCC-hhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEE
Q 042445           12 FSDFQV-FHVGSGFS-GSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLG   89 (246)
Q Consensus        12 ~~~~p~-NPtG~~~~-~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G   89 (246)
                      ++..|. ||+|.+++ .+++++|.++|++||+++|+||+|.++.+.+..+ ....++-..+++   ++||.++ +|+|+|
T Consensus       208 vi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~~~-a~~~~~~~pDii---tlsK~l~-~G~pig  282 (443)
T PRK08360        208 LFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWF-AIEHFGVEPDII---TLGKPLG-GGLPIS  282 (443)
T ss_pred             EEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCccch-hhhhcCCCCCEE---Eeccccc-CCceeE
Confidence            444453 99999887 5589999999999999999999999987766433 222222222333   6799987 899999


Q ss_pred             EEEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhh----cCCCCc
Q 042445           90 WLVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLK----EIPCIT  164 (246)
Q Consensus        90 ~i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~----~~~~~~  164 (246)
                      |+++++        ++++.+... ...+++.+++.+.++.+.|+...+.   ...+..+++-+.+.+.|+    +.+.+.
T Consensus       283 av~~~~--------~i~~~~~~~~~~~T~~~~p~~~aaa~a~l~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~v~  351 (443)
T PRK08360        283 ATIGRA--------EIMDSLPPLAHAFTLSGNPVASAAALAVIEEIEEK---NLLKRAEKLGNYTKKRLEEMKKKHELIG  351 (443)
T ss_pred             EEEEcH--------HHHhhhcCCCCCCCCCcCHHHHHHHHHHHHHHHHc---CHHHHHHHHHHHHHHHHHHHHHhCCCee
Confidence            999988        888888644 3345578999999999999853221   123334444444444443    343222


Q ss_pred             cccCCCCceEEEEEeccccc-cCC-CChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHHHH
Q 042445          165 CPKKPEGSMFVMVKLNYSLL-EGI-NSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAFYD  240 (246)
Q Consensus       165 ~~~~~~~g~~~~~~~~~~~~-~~~-~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~~  240 (246)
                       .+.. -|.++-+++....- +.. ......+...+.++||.+.+..    .+.+||++.  .+++++++++++|.++++
T Consensus       352 -~vrg-~Gl~~gie~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~----~~~lr~~P~l~~t~~~id~~~~~l~~~l~  425 (443)
T PRK08360        352 -DVRG-IGLMIGVDLVKDRETKERAYEEAAKVVWRAWELGLIVTFFS----GNVLRIQPPLTIEKEVLDEGLDILEEAIE  425 (443)
T ss_pred             -eeec-cceEEEEEEecCCcccCccHHHHHHHHHHHHHCCeEEeecC----CCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence             2233 35666666642210 000 0123345566778999886532    478999766  499999999999999998


Q ss_pred             HHh
Q 042445          241 RHA  243 (246)
Q Consensus       241 ~~~  243 (246)
                      +..
T Consensus       426 ~~~  428 (443)
T PRK08360        426 DVE  428 (443)
T ss_pred             HHH
Confidence            754

>PRK06767 methionine gamma-lyase; Provisional

Probab=99.81  E-value=2.7e-18  Score=146.00  Aligned_cols=208  Identities=14%  Similarity=0.106  Sum_probs=137.8

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.++++    ++++|+||||.+.+   +++|.++|+++|+++|+|++|.......    ++. .+   .-+++.|+
T Consensus       137 ~~l~~~i~~~tklV~lesp~NptG~v~d---l~~I~~la~~~g~~vivD~a~a~~~~~~----pl~-~g---~Div~~S~  205 (386)
T PRK06767        137 ADIENKIRPNTKLIFVETPINPTMKLID---LKQVIRVAKRNGLLVIVDNTFCSPYLQR----PLE-LG---CDAVVHSA  205 (386)
T ss_pred             HHHHHhhCcCceEEEEeCCCCCCceecC---HHHHHHHHHHcCCEEEEECCCcccccCC----chh-cC---CcEEEecC
Confidence            3455555543    88899999999988   7888889999999999999997543321    111 11   23788899


Q ss_pred             ccccccCCceE-EEEEeeCCCCCcchhhHHHHHHHH-hh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 042445           78 SKRGIVPGLRL-GWLVTSDPNGILQDSGIVDSIKIF-LN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCC  154 (246)
Q Consensus        78 sK~~~~~g~r~-G~i~~~~~~~~~~~~~~~~~l~~~-~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~  154 (246)
                      ||.++++|.++ ||+++++        +.++.+... .. .+..++++.++++.+.|+     .+..+.++.+++++.+.
T Consensus       206 sK~l~g~g~~~gG~v~~~~--------~~i~~~~~~~~~~~g~~~~~~~a~l~~~~L~-----tl~~r~~~~~~~a~~la  272 (386)
T PRK06767        206 TKYIGGHGDVVAGVTICKT--------RALAEKIRPMRKDIGGIMAPFDAWLLLRGLK-----TLAVRMDRHCDNAEKIV  272 (386)
T ss_pred             cceecCCCCceeEEEEeCh--------HHHHHHHHHHHHHhCCCCCHHHHHHHHcCCC-----cHHHHHHHHHHHHHHHH
Confidence            99999999886 8888887        777765433 32 333567776666555554     24556677799999999


Q ss_pred             HHhhcCCCCccccCC----------CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcC------------
Q 042445          155 DRLKEIPCITCPKKP----------EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG------------  212 (246)
Q Consensus       155 ~~L~~~~~~~~~~~~----------~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~------------  212 (246)
                      +.|+++|++..+..|          ..|-.+.++++...     .+...+.+.|+..++.+.-|....            
T Consensus       273 ~~L~~~p~v~~v~~p~~~~~~~~~~~~gg~vsf~l~~~~-----~~~~~f~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~  347 (386)
T PRK06767        273 SFLKNHDAVEGVWYPEGELASRQMKRGGGVISFSIKGGK-----EETQAFINDLHFITIAVSLGDTETLIQHPATMTHAA  347 (386)
T ss_pred             HHHHcCCCccEEECCCcHHHHHhCCCCCceEEEEEcCCH-----HHHHHHHHhCCccEEecCCCCcCccccCCCcccccc
Confidence            999999988754433          12334444564221     134444555666666665553221            


Q ss_pred             -----------CCCeEEEEeecChHHHHHHHHHHHHHHH
Q 042445          213 -----------LKDWLRITFAVEPSALENGLGRMKAFYD  240 (246)
Q Consensus       213 -----------~~~~iRls~~~~~~~l~~~~~~l~~~~~  240 (246)
                                 .++.||||++.++  .+..++-|.+++.
T Consensus       348 ~~~~~~~~~gi~~~l~R~svGlE~--~~dl~~dl~~al~  384 (386)
T PRK06767        348 IPAELRQEMGIYDNLIRLSVGLES--WEDIVSDLEQALK  384 (386)
T ss_pred             CCHHHHHhcCCCCCeEEEEeccCC--HHHHHHHHHHHHh
Confidence                       0468999999743  3445555666554

>PRK02948 cysteine desulfurase; Provisional

Probab=99.81  E-value=7.4e-19  Score=149.54  Aligned_cols=214  Identities=10%  Similarity=0.057  Sum_probs=143.7

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.++++    ++++|+||||.+++   +++|.++|+++|+++++|+++.....   +. .   +...+..+++.|+
T Consensus       129 ~~l~~~l~~~~~lv~~~~~~n~tG~~~~---~~~I~~l~~~~~~~vivD~~~~~g~~---~~-~---~~~~~~d~~~~s~  198 (381)
T PRK02948        129 VDLERAITPDTVLASIQHANSEIGTIQP---IAEIGALLKKYNVLFHSDCVQTFGKL---PI-D---VFEMGIDSLSVSA  198 (381)
T ss_pred             HHHHHhcCCCCEEEEEECCcCCcEeehh---HHHHHHHHHHcCCEEEEEChhhcccc---cc-C---cccCCCCEEEecH
Confidence            3455555443    78999999999988   67888999999999999977653221   11 1   1122345778899


Q ss_pred             ccccccCCceEEEEEeeCCCCCcchhhH-HHHHHH----Hhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGILQDSGI-VDSIKI----FLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETAD  151 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~-~~~l~~----~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~  151 (246)
                      +|.+|.+|  +|++++++        ++ +..+..    ... ..+++|.+.+.++..++... .+++++.++.+++.++
T Consensus       199 ~K~~gp~G--~G~l~~~~--------~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~-~~~~~~~~~~~~~~~~  267 (381)
T PRK02948        199 HKIYGPKG--VGAVYINP--------QVRWKPVFPGTTHEKGFRPGTVNVPGIAAFLTAAENI-LKNMQEESLRFKELRS  267 (381)
T ss_pred             HhcCCCCc--EEEEEEcC--------CCCCCCcccCCCCCCCcCCCCccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            99998888  89998876        32 111110    001 12367888899888888742 3578888999999999


Q ss_pred             HHHHHhhcCCCCccccCCCCceEEE---EEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC---------------
Q 042445          152 KCCDRLKEIPCITCPKKPEGSMFVM---VKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---------------  213 (246)
Q Consensus       152 ~l~~~L~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---------------  213 (246)
                      .+.+.|+++ ++..+ ......+..   +.+...   +. +..++ ...|.++||.+.+|..|..               
T Consensus       268 ~l~~~L~~~-~~~v~-~~~~~~~~~~~i~~~~~~---~~-~~~~~-~~~l~~~gI~v~~g~~c~~~~~~p~~~~~~~~~~  340 (381)
T PRK02948        268 YFLEQIQTL-PLPIE-VEGHSTSCLPHIIGVTIK---GI-EGQYT-MLECNRRGIAISTGSACQVGKQEPSKTMLAIGKT  340 (381)
T ss_pred             HHHHHHhcC-CCCEE-EeCCCccCcCCEEEEEeC---CC-CHHHH-HHhcccCCEEEEchHhcCCCCCCCCHHHHHcCCC
Confidence            999999987 44322 111112211   111111   11 24444 4456788999998875421               


Q ss_pred             ----CCeEEEEeec--ChHHHHHHHHHHHHHHHHHh
Q 042445          214 ----KDWLRITFAV--EPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       214 ----~~~iRls~~~--~~~~l~~~~~~l~~~~~~~~  243 (246)
                          .+++|+|++.  +++++++.++.|++.++++.
T Consensus       341 ~~~~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~  376 (381)
T PRK02948        341 YEEAKQFVRFSFGQQTTKDQIDTTIHALETIGNQFY  376 (381)
T ss_pred             hHHhCceEEEEcCCCCCHHHHHHHHHHHHHHHHHHh
Confidence                3789999994  89999999999999887654

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=99.81  E-value=3e-18  Score=147.74  Aligned_cols=215  Identities=13%  Similarity=0.143  Sum_probs=145.1

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.++++    ++++|+||||.+++   +++|.++|+++|+++++|++|....   .+. .+..+   +.-+++.|+
T Consensus       164 ~~l~~~i~~~t~lv~i~~~~n~tG~~~~---~~~I~~l~~~~g~~vivD~a~~~g~---~~~-~~~~~---~~d~~~~s~  233 (424)
T PLN02855        164 EQLKELLSEKTKLVATHHVSNVLGSILP---VEDIVHWAHAVGAKVLVDACQSVPH---MPV-DVQTL---GADFLVASS  233 (424)
T ss_pred             HHHHHHhccCceEEEEeCccccccccCC---HHHHHHHHHHcCCEEEEEhhhhcCC---cCC-Cchhc---CCCEEEeec
Confidence            4455666544    88899999999998   6788899999999999999996322   111 12222   223779999


Q ss_pred             ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHh---------------------hh-cCCCCchHHHHHHHHHhhch
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFL---------------------NI-SSDPATFIQGAVPQILEKTE  135 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~---------------------~~-~~~~~~~~q~~~~~~l~~~~  135 (246)
                      +|.+|.+|  +||+++++        ++++.+....                     .+ ..+.+.....++..+++...
T Consensus       234 ~K~~gp~G--~G~l~~~~--------~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~  303 (424)
T PLN02855        234 HKMCGPTG--IGFLWGKS--------DLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLS  303 (424)
T ss_pred             ccccCCCc--cEEEEEch--------hhhhcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHH
Confidence            99876666  89999987        6665543210                     01 11244445555555565323


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC-----CCceEEEEEeccccccCCCChHHHHHHHHHhc-CeEEecCC
Q 042445          136 EEFFSKIIDILRETADKCCDRLKEIPCITCPKKP-----EGSMFVMVKLNYSLLEGINSDMEFALKLAKEE-SVIVLPGI  209 (246)
Q Consensus       136 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-gi~v~pg~  209 (246)
                      +..+++.+++..+.++.+.+.|++++++..+.+.     ..+.++.+.++..      +..+ +...|.++ ||.+..|.
T Consensus       304 ~~g~~~i~~~~~~l~~~l~~~L~~~~g~~i~~~~~~~~~~r~~~v~~~~~~~------~~~~-v~~~L~~~~gI~v~~g~  376 (424)
T PLN02855        304 EIGMDRIHEYEVELGTYLYEKLSSVPGVRIYGPKPSEGVGRAALCAFNVEGI------HPTD-LSTFLDQQHGVAIRSGH  376 (424)
T ss_pred             HhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCcccccCcccEEEEEECCc------CHHH-HHHHhcccCCEEEechh
Confidence            4457778888888899999999888777643221     1134555556532      2334 45555555 99999887


Q ss_pred             CcC--------CCCeEEEEeec--ChHHHHHHHHHHHHHHHHHh
Q 042445          210 TVG--------LKDWLRITFAV--EPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       210 ~f~--------~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~~  243 (246)
                      .|.        .++++|+|+..  ++++++.+++.|++.++.+.
T Consensus       377 ~c~~~~~~~~g~~~~iRiS~~~ynt~~di~~l~~~l~~~~~~~~  420 (424)
T PLN02855        377 HCAQPLHRYLGVNASARASLYFYNTKEEVDAFIHALKDTIAFFS  420 (424)
T ss_pred             hhhHHHHHHhCCCCeEEEEeccCCCHHHHHHHHHHHHHHHHHHH
Confidence            653        25789999984  89999999999999887653

>PLN02242 methionine gamma-lyase

Probab=99.81  E-value=5.7e-18  Score=144.89  Aligned_cols=137  Identities=14%  Similarity=0.098  Sum_probs=103.7

Q ss_pred             hhhhhhhcc-c----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcc
Q 042445            2 ELINQDITR-E----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGS   76 (246)
Q Consensus         2 e~~~~~~~~-~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s   76 (246)
                      |.+++.+++ +    ++++|+||||.+++   +++|.++|+++|+++|+||+|..+.+...      .+   +..++++|
T Consensus       153 e~l~~~i~~~~tklV~lesp~NPtG~v~d---l~~I~~la~~~gi~livDea~~~~~~~~~------~~---g~divv~S  220 (418)
T PLN02242        153 EAVKKAVVPGKTKVLYFESISNPTLTVAD---IPELARIAHEKGVTVVVDNTFAPMVLSPA------RL---GADVVVHS  220 (418)
T ss_pred             HHHHHhcCcCCCEEEEEecCCCCCCcccC---HHHHHHHHHHhCCEEEEECCCCccCCCHH------Hc---CCcEEEEe
Confidence            456666654 2    88999999999985   89999999999999999999986654321      11   24488999


Q ss_pred             cccccccCCce-EEEEEeeCCCCCcchhhHHHHHHHHhh---hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 042445           77 ISKRGIVPGLR-LGWLVTSDPNGILQDSGIVDSIKIFLN---ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADK  152 (246)
Q Consensus        77 ~sK~~~~~g~r-~G~i~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~  152 (246)
                      +||.++++|++ .||+++++        ++++.++....   ...+.+...|.+...++...   .+..+.++++++++.
T Consensus       221 ~SK~l~g~g~~~gG~iv~~~--------~li~~l~~~~~~~~~~~g~~~~~~~A~l~~~~l~---tl~~r~~~~~~~a~~  289 (418)
T PLN02242        221 ISKFISGGADIIAGAVCGPA--------ELVNSMMDLHHGALMLLGPTMNPKVAFELSERLP---HLSLRMKEHCRRAME  289 (418)
T ss_pred             CccccCCCCCceEEEEEcCH--------HHHHHHHHHhhhhhhccCCCCCHHHHHHHHcCCC---cHHHHHHHHHHHHHH
Confidence            99999999988 58999887        88888876633   23355666777776665522   455566788999999


Q ss_pred             HHHHhhcCC
Q 042445          153 CCDRLKEIP  161 (246)
Q Consensus       153 l~~~L~~~~  161 (246)
                      +.+.|++++
T Consensus       290 la~~L~~~~  298 (418)
T PLN02242        290 YAKRMKELG  298 (418)
T ss_pred             HHHHHHhCC
Confidence            999999873

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=99.80  E-value=4.8e-18  Score=145.86  Aligned_cols=209  Identities=18%  Similarity=0.133  Sum_probs=139.6

Q ss_pred             CCcCCCc-cCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEe
Q 042445           15 FQVFHVG-SGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVT   93 (246)
Q Consensus        15 ~p~NPtG-~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~   93 (246)
                      .++| +| .++|.+.+++|.++|++||+++|+||+|.++...+..+    .....+....+.++||.++ +|+++|++++
T Consensus       207 v~g~-~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~----a~~~~gv~pDi~tlsK~l~-~G~pigav~~  280 (425)
T PRK07495        207 VQGE-GGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLF----AMEHHEVAADLTTMAKGLA-GGFPLAAVTG  280 (425)
T ss_pred             ccCC-CCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCCce----eecccCCCCCEEeehhhhc-CCccceEEEE
Confidence            3456 77 45799999999999999999999999999887666432    2222234456889999975 7899999999


Q ss_pred             eCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhh----cCCCCccccC
Q 042445           94 SDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLK----EIPCITCPKK  168 (246)
Q Consensus        94 ~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~----~~~~~~~~~~  168 (246)
                      ++        ++.+.+... ...+++.|++.++++.+.++...+.   ...+..++..+.+.+.|+    +.|.+..+ .
T Consensus       281 ~~--------~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v-r  348 (425)
T PRK07495        281 RA--------EIMDAPGPGGLGGTYGGNPLGIAAAHAVLDVIEEE---DLCERANQLGNRLKQRLASLRETVPEIADI-R  348 (425)
T ss_pred             cH--------HHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHhc---hHHHHHHHHHHHHHHHHHHHHhhCCCeeee-e
Confidence            98        888776543 3345588999999777777632221   122222233333333332    24433321 2


Q ss_pred             CCCceEEEEEeccccccCCC-ChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHHhh
Q 042445          169 PEGSMFVMVKLNYSLLEGIN-SDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDRHAE  244 (246)
Q Consensus       169 ~~~g~~~~~~~~~~~~~~~~-~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~~~  244 (246)
                       ..|+++|+++....-.... .....+...+.++|+.+.+....  .+.+||....  +++++++++++|.+++++...
T Consensus       349 -G~Gl~~~iel~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~g~~--~~~~r~~Ppl~it~~~id~~~~~l~~~l~~~~~  424 (425)
T PRK07495        349 -GPGFMNAVEFNDADSGLPSAEFANRVRLKALEKGLILLTCGVH--GNVIRFLAPITIQDDVFAEALDILEASILEASA  424 (425)
T ss_pred             -cCceEEEEEEecCCCCCccHHHHHHHHHHHHHCCeEEeecCCC--CCEEEEeCCCccCHHHHHHHHHHHHHHHHHHhc
Confidence             3389999998543100000 11344566677899998763211  4889999774  999999999999999987653

>PRK06234 methionine gamma-lyase; Provisional

Probab=99.80  E-value=8.1e-18  Score=143.59  Aligned_cols=140  Identities=12%  Similarity=0.134  Sum_probs=102.4

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHc--CCEEEEccccCCcccCCCCCccccccCCcccEEEEc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKL--GIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLG   75 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~--~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~   75 (246)
                      |.+++.++++    ++++|+||||.+.+   +++|.++|+++  |+++|+||+|..+.+..    ++ ..   +..+++.
T Consensus       140 e~l~~~i~~~tklI~iesP~NPtG~v~d---l~~I~~la~~~~~~i~livDea~~~~~~~~----~l-~~---g~Divv~  208 (400)
T PRK06234        140 EEVRNALKANTKVVYLETPANPTLKVTD---IKAISNIAHENNKECLVFVDNTFCTPYIQR----PL-QL---GADVVVH  208 (400)
T ss_pred             HHHHHHhccCCeEEEEECCCCCCCCcCC---HHHHHHHHHhcCCCCEEEEECCCCchhcCC----ch-hh---CCcEEEe
Confidence            4566666554    88899999999987   88888999997  99999999999765431    11 11   2348999


Q ss_pred             ccccccccCCceE-EEEEeeCCCCCcchhhHHHHHHHH--hh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 042445           76 SISKRGIVPGLRL-GWLVTSDPNGILQDSGIVDSIKIF--LN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETAD  151 (246)
Q Consensus        76 s~sK~~~~~g~r~-G~i~~~~~~~~~~~~~~~~~l~~~--~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~  151 (246)
                      |+||.++++|+++ ||+++++        ++++.++..  .. .+..+++.....+.+.++.     +..+.++.+++.+
T Consensus       209 S~sK~l~g~g~~~gG~v~~~~--------~~~~~l~~~~~~~~~g~~l~p~~a~l~~~~l~t-----l~~r~~~~~~na~  275 (400)
T PRK06234        209 SATKYLNGHGDVIAGFVVGKE--------EFINQVKLFGIKDMTGSVIGPFEAFLIIRGMKT-----LQIRMEKHCKNAM  275 (400)
T ss_pred             eccccccCCCCceeEEEEecH--------HHHHHHHHHHHHHhcCCCCCHHHHHHHHhccCc-----HHHHHHHHHHHHH
Confidence            9999999999875 9999887        888877653  22 2345677777666666653     4455555667888


Q ss_pred             HHHHHhhcCCCCcc
Q 042445          152 KCCDRLKEIPCITC  165 (246)
Q Consensus       152 ~l~~~L~~~~~~~~  165 (246)
                      .+.+.|++.|.+..
T Consensus       276 ~~a~~L~~~~~V~~  289 (400)
T PRK06234        276 KVAKFLESHPAVEK  289 (400)
T ss_pred             HHHHHHHcCCCeeE
Confidence            88899987765543

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=99.80  E-value=3.7e-18  Score=146.17  Aligned_cols=205  Identities=16%  Similarity=0.153  Sum_probs=141.0

Q ss_pred             cccCCcCCCccCCCh-hhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSGFSG-SFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~-~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      ++..+++++|...++ +++++|.++|++||+++|+||+|.++.+.|..+ +....+....++   ++||.+++.++|+||
T Consensus       191 i~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G~~~-~~~~~~~~~di~---~~gK~l~~g~~~ig~  266 (401)
T TIGR01885       191 IVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLL-CVDHENVKPDIV---LLGKALSGGVYPVSA  266 (401)
T ss_pred             EEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhh-HHhhcCCCCCEE---EeeccccCCCCCcEE
Confidence            444567899998865 479999999999999999999998876666432 221122122333   467999887799999


Q ss_pred             EEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCC-CCccccC
Q 042445           91 LVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIP-CITCPKK  168 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~  168 (246)
                      +++++        ++++.+... ...+++.+++.+.++.++|+...+.   ...+..++..+.+.+.|++++ ++.....
T Consensus       267 v~~~~--------~i~~~~~~~~~~~t~~~~p~~~~aa~a~L~~i~~~---~l~~~~~~~~~~~~~~L~~l~~~~~~~~~  335 (401)
T TIGR01885       267 VLADD--------DVMLTIKPGEHGSTYGGNPLACAVAVAALEVLEEE---KLAENAEKLGEIFRDQLKKLPKPIITEVR  335 (401)
T ss_pred             EEEcH--------HHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHhccCCceeEEe
Confidence            99998        888877653 3344577899999999988743322   234556666788888888763 2211123


Q ss_pred             CCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHHH
Q 042445          169 PEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAFY  239 (246)
Q Consensus       169 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~  239 (246)
                      +.|.++. +.++.... +  .....+...|.++||.+.|+.    ++.+||++.  .+++++++++++|.+++
T Consensus       336 g~g~~~~-i~~~~~~~-~--~~~~~l~~~l~~~Gv~v~~~~----~~~lRi~p~l~~t~~~i~~~l~~l~~~l  400 (401)
T TIGR01885       336 GRGLLNA-IVIDESKT-G--RTAWDLCLKLKEKGLLAKPTH----GNIIRLAPPLVITEEQLDEGLEIIKKVI  400 (401)
T ss_pred             ecCeeEE-EEeccCcc-h--hHHHHHHHHHHhCCEEEEecC----CCEEEEeCCccCCHHHHHHHHHHHHHHh
Confidence            4444444 44543210 0  023444555678899998854    689999986  49999999999999876

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>cd00617 Tnase_like Tryptophanase family (Tnase)

Probab=99.80  E-value=4e-18  Score=145.62  Aligned_cols=223  Identities=18%  Similarity=0.147  Sum_probs=151.8

Q ss_pred             hhhhhhhcc------c--cccCCcCCC-ccCCChhhHHHHHHHHHHcCCEEEEccccCCc--cc-----CCCCCcccccc
Q 042445            2 ELINQDITR------E--FSDFQVFHV-GSGFSGSFVSPIAETAKKLGIMVIANEVYGHL--AF-----GNTPFVSMGVF   65 (246)
Q Consensus         2 e~~~~~~~~------~--~~~~p~NPt-G~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~--~~-----~~~~~~~~~~~   65 (246)
                      |.+++.+++      +  ++++||||+ |+++|.+++++|.++|++||++||+|++....  .+     ++....++.  
T Consensus       139 e~Le~~I~~~~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~--  216 (431)
T cd00617         139 AKLEKLIDEVGAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIA--  216 (431)
T ss_pred             HHHHHHhCcccCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHH--
Confidence            455666552      1  778999998 99999999999999999999999999995421  12     121122222  


Q ss_pred             CCcccEEEEcccccccccCCce------EEEEEeeCCCCCcchhhHHHHHHHHh----hh-c-CCCCchHHHHHHHHHhh
Q 042445           66 GSIVPLLTLGSISKRGIVPGLR------LGWLVTSDPNGILQDSGIVDSIKIFL----NI-S-SDPATFIQGAVPQILEK  133 (246)
Q Consensus        66 ~~~~~~i~~~s~sK~~~~~g~r------~G~i~~~~~~~~~~~~~~~~~l~~~~----~~-~-~~~~~~~q~~~~~~l~~  133 (246)
                         +.++.+.|+||.+.+.|+|      .||++++++       +++++++...    .+ + .+.+.-..++++..|.+
T Consensus       217 ---ei~~e~~s~sd~~~mS~~K~~~~~~GG~i~~~d~-------~l~~~~~~~~~~~~~~~~~gG~~~r~~~A~A~gL~e  286 (431)
T cd00617         217 ---EIAREMFSYADGCTMSAKKDGLVNIGGFLALRDD-------ELYEEARQRVVLYEGFVTYGGMAGRDMEALAQGLRE  286 (431)
T ss_pred             ---HHHHHhhccCCEEEEEeecCCCCccceEEEeCcH-------HHHHHHHHhccccCCccccccccHHHHHHHHHHHHh
Confidence               1235578888888888887      568888873       5888887531    11 1 13344444555446653


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEeccccccCC----CChHHHHHHHHHhcCeEEec-C
Q 042445          134 TEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGI----NSDMEFALKLAKEESVIVLP-G  208 (246)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----~~~~~~~~~ll~~~gi~v~p-g  208 (246)
                      ..+  .+...+.+. +++.+.+.|++. |+. +..|.||+++|++++.- ++++    -++..++.+++.+.||.+.. |
T Consensus       287 ~~~--~~~l~~~~~-~r~~l~~~L~~~-G~~-v~~P~Ggh~v~~d~~~~-~~~~~~~~~~~~~la~~L~~e~gV~~~~~g  360 (431)
T cd00617         287 AVE--EDYLRHRVE-QVRYLGDRLDEA-GVP-IVEPAGGHAVFIDAREF-LPHIPQEQFPAQALAAELYLEAGVRAVELG  360 (431)
T ss_pred             ccc--HHHHHHHHH-HHHHHHHHHHHC-CCC-ccCCCcceEEEEEhHHh-cCCCCcccCcHHHHHHHHHHHcCeeEEeec
Confidence            211  222333333 558899999987 676 57899999999987642 1111    13788888999999999765 4


Q ss_pred             CCc-CC-----------CCeEEEEeec---ChHHHHHHHHHHHHHHHHH
Q 042445          209 ITV-GL-----------KDWLRITFAV---EPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       209 ~~f-~~-----------~~~iRls~~~---~~~~l~~~~~~l~~~~~~~  242 (246)
                      ... +.           -+.+|+++..   +.+.++..++.|...+++.
T Consensus       361 ~~~~~~~~~~~~~~~~~~~~~rl~~prr~~t~~~~~~~~~~~~~~~~~~  409 (431)
T cd00617         361 IFSAGRDPNTGENKYPELELVRLAIPRRVYTQDHMDYVAAAVIALYERR  409 (431)
T ss_pred             ceecccCCCCCcccCCccceeEEeccccccCHHHHHHHHHHHHHHHhhH
Confidence            321 11           2789999984   8999999999999888653

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=99.79  E-value=3e-17  Score=139.78  Aligned_cols=144  Identities=15%  Similarity=0.174  Sum_probs=104.0

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      |.+++.++++    ++++|+||||.+++   +++|.++|+++|+++|+|++|..+....    ++. .+   .-++++|+
T Consensus       140 e~l~~~i~~~tklV~ie~p~NPtg~v~d---l~~I~~la~~~gi~livD~t~a~~~~~~----~l~-~~---~Divv~S~  208 (398)
T PRK08249        140 EQIEAEIAKGCDLLYLETPTNPTLKIVD---IERLAAAAKKVGALVVVDNTFATPINQN----PLA-LG---ADLVIHSA  208 (398)
T ss_pred             HHHHHhcCCCCeEEEEECCCCCCCccCC---HHHHHHHHHHcCCEEEEECCcCccccCC----chh-hC---CCEEeccC
Confidence            4566666654    77899999999998   7789999999999999999999654321    111 12   12778999


Q ss_pred             ccccccCCceE-EEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445           78 SKRGIVPGLRL-GWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD  155 (246)
Q Consensus        78 sK~~~~~g~r~-G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  155 (246)
                      ||.++++|.++ ||+++++        +++++++.... .+..++++.++.+.+.++.     +..+.++..++++.+.+
T Consensus       209 sK~l~g~~~~~gG~vv~~~--------~l~~~l~~~~~~~g~~~s~~~a~l~l~~l~t-----L~~R~~~~~~na~~la~  275 (398)
T PRK08249        209 TKFLSGHADALGGVVCGSK--------ELMEQVYHYREINGATMDPMSAYLILRGMKT-----LKLRVRQQQESAMALAK  275 (398)
T ss_pred             ceecCCCCCceEEEEECCH--------HHHHHHHHHHHhcCCCCCHHHHHHHHhCcch-----HHHHHHHHHHHHHHHHH
Confidence            99998888776 5566655        88888876654 3446677777776665553     55666777889999999


Q ss_pred             HhhcCCCCccccCC
Q 042445          156 RLKEIPCITCPKKP  169 (246)
Q Consensus       156 ~L~~~~~~~~~~~~  169 (246)
                      .|+++|.+..+..|
T Consensus       276 ~L~~~p~v~~V~yP  289 (398)
T PRK08249        276 YLQTHPKVEAVYYP  289 (398)
T ss_pred             HHHcCCCeeEEECC
Confidence            99987766543333

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=99.79  E-value=1.6e-17  Score=141.44  Aligned_cols=219  Identities=15%  Similarity=0.101  Sum_probs=146.6

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.+.++    ++++||||||.+++   +++|.++|+++|+++++|+++.....   + ..+...+   --+++.|+
T Consensus       131 ~~l~~~i~~~t~lv~~~~~~n~tG~~~~---~~~I~~la~~~g~~~ivD~a~~~g~~---~-~~~~~~~---~D~~~~s~  200 (382)
T TIGR03403       131 EQVREAITEKTALVSVMWANNETGMIFP---IKEIGEICKERGVLFHTDAVQAIGKI---P-VDVQKAG---VDFLSFSA  200 (382)
T ss_pred             HHHHHhcccCCeEEEEEcccCCCccccC---HHHHHHHHHHcCCEEEEechhhcCCC---c-cCccccC---CCEEEEcc
Confidence            3455555543    78899999999999   66888899999999999999774221   1 1111111   22788899


Q ss_pred             ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRL  157 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L  157 (246)
                      +|.+|.+|  +|+++..+......  .+............+++...+.++..++.. ...+++...+++++.++.+.+.|
T Consensus       201 ~K~~gp~G--~g~l~vr~~~~~~p--~~~g~~~~~~~~~gt~~~~~~~al~~al~~-~~~~~~~~~~~~~~l~~~l~~~L  275 (382)
T TIGR03403       201 HKFHGPKG--VGGLYIRKGVELTP--LFHGGEHMGGRRSGTLNVPYIVAMGEAMRL-ANEYLDFEKSHVRRLRDRLEDAL  275 (382)
T ss_pred             hhhCCCCc--eEEEEECCCCCCCC--cccCCCCCCCcccCCcChHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHH
Confidence            99988788  58887765321110  110000000011226788888888888874 34457788889999999999999


Q ss_pred             hcCCCCccccCCC---CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC-------------------CC
Q 042445          158 KEIPCITCPKKPE---GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-------------------KD  215 (246)
Q Consensus       158 ~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-------------------~~  215 (246)
                      ++++++.. ..+.   .+.++.+.++..      +..+. ...|.++||.++.|..|..                   .+
T Consensus       276 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~~-~~~L~~~gI~v~~g~~c~~~~~~~~~v~~~~g~~~~~~~~  347 (382)
T TIGR03403       276 LELPDVFV-VGDREHRVPNTILISIKGV------EGEAM-LWDLNKAGIAASTGSACASEDLEANPVMVAIGADKELAHT  347 (382)
T ss_pred             hcCCCEEE-ECCCCCCcCCEEEEEeCCC------CHHHH-HHhhccCCEEEEchhccCCCCCCcCHHHHHcCCChHHhCe
Confidence            98888874 3332   234555556432      24444 4447789999998876631                   25


Q ss_pred             eEEEEeec--ChHHHHHHHHHHHHHHHHHh
Q 042445          216 WLRITFAV--EPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       216 ~iRls~~~--~~~~l~~~~~~l~~~~~~~~  243 (246)
                      .+|+|+..  ++++++++++.|++.+++..
T Consensus       348 ~iR~s~~~~~t~~did~~~~~l~~~~~~~~  377 (382)
T TIGR03403       348 AIRLSLSRFTTEEEIDYTIEVFKKAVQRLR  377 (382)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            79999995  89999999999999887754

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=99.79  E-value=6.3e-18  Score=141.48  Aligned_cols=198  Identities=15%  Similarity=0.084  Sum_probs=130.7

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      ++++|||| |.+++.+++++|+++|+++|+++|+||+|..+.....+. ++.......+ +++.|+||.|+++|   |++
T Consensus       132 ~l~~p~n~-g~~~~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~-~~~~~~~~~d-~~~~s~sK~~~~~~---g~~  205 (338)
T cd06502         132 SLENTTEG-GTVYPLDELKAISALAKENGLPLHLDGARLANAAAALGV-ALKTYKSGVD-SVSFCLSKGGGAPV---GAV  205 (338)
T ss_pred             EEEeecCC-ccccCHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCC-CHHHHHhcCC-EEEEeccccCCCcc---ceE
Confidence            88999998 667799999999999999999999999986443211111 2222212223 45779999999887   654


Q ss_pred             -EeeCCCCCcchhhHHHHHHHHhhh---cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccc
Q 042445           92 -VTSDPNGILQDSGIVDSIKIFLNI---SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPK  167 (246)
Q Consensus        92 -~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~  167 (246)
                       ++++        ++++.++.....   +.+.+++.+.++...|+..  .+. +..+.+.++++.+.+.|++++ +. . 
T Consensus       206 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~L~~~--~~~-~~~~~~~~~~~~l~~~L~~~~-~~-~-  271 (338)
T cd06502         206 VVGNR--------DFIARARRRRKQAGGGMRQSGFLAAAGLAALEND--LWL-RRLRHDHEMARRLAEALEELG-GL-E-  271 (338)
T ss_pred             EECCH--------HHHHHHHHHHHHhCCChhhHHHHHHHHHHHhcCc--hHH-HHHHHHHHHHHHHHHHHHhcC-CC-c-
Confidence             4555        888888765422   2245777888888878642  233 444666777889999999874 43 2 


Q ss_pred             CCCCceEEEEEeccccccCCCChHHHHHHHH--HhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHH
Q 042445          168 KPEGSMFVMVKLNYSLLEGINSDMEFALKLA--KEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKA  237 (246)
Q Consensus       168 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll--~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~  237 (246)
                      .+..+.++.++++....    .-.++..++.  .++|+.+.+..    .+++|+++..  ++++++++++.+++
T Consensus       272 ~~~~~~~~~v~~~~~~~----~~~~l~~~l~~~~~~gi~~~~~~----~~~lRi~~~~~~~~~~i~~~~~~l~~  337 (338)
T cd06502         272 SEVQTNIVLLDPVEANA----VFVELSKEAIERRGEGVLFYAWG----EGGVRFVTHWDTTEEDVDELLSALKA  337 (338)
T ss_pred             ccccCCeEEEecCCccH----HHHHHHHHHHHhhhCCEEEEecC----CCeEEEEeecCCCHHHHHHHHHHHhc
Confidence            33445666665542210    0112222211  25799887753    3899999984  88999999988764

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=99.79  E-value=2.8e-17  Score=138.98  Aligned_cols=202  Identities=13%  Similarity=0.103  Sum_probs=140.4

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccccccc-ccCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRG-IVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~g~r~G~   90 (246)
                      .+++++||||+.++   +++|.++|+++|+++|+|++++..   ..+ ..+..++   .-++++|++|.+ +.+|  +||
T Consensus       134 ~~~~~~~~tG~~~~---i~~I~~l~~~~g~~livD~~~~~g---~~~-~~~~~~~---~D~~~~s~~K~l~~p~G--~G~  201 (363)
T TIGR02326       134 ALVHCETTTGILNP---IEAVAKLAHRHGKVTIVDAMSSFG---GIP-IDIAELH---IDYLISSANKCIQGVPG--FGF  201 (363)
T ss_pred             EEEeecCCccccCc---HHHHHHHHHHcCCEEEEEcccccc---Ccc-cchhhcC---ccEEEecCccccccCCc--ceE
Confidence            46677899999998   789999999999999999987632   222 2233332   237889999976 4456  799


Q ss_pred             EEeeCCCCCcchhhHHHHHHHH-h-----------------h-hcCCCCchHHHHHHHHHhhchHH-HHHHHHHHHHHHH
Q 042445           91 LVTSDPNGILQDSGIVDSIKIF-L-----------------N-ISSDPATFIQGAVPQILEKTEEE-FFSKIIDILRETA  150 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~-~-----------------~-~~~~~~~~~q~~~~~~l~~~~~~-~~~~~~~~~~~~~  150 (246)
                      +++++        +.++.+... .                 + ..+..+...+.++.+++..-.+. .+++.++++++++
T Consensus       202 l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~  273 (363)
T TIGR02326       202 VIARQ--------AELAACKGNARSLSLDLYDQWRCMEDNHGKWRFTSPTHVVHAFAQALLELEKEGGVAARHQRYQQNQ  273 (363)
T ss_pred             EEECH--------HHHHHhhcCCCceeecHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Confidence            99988        666654310 0                 0 11245777778877777643333 4677889999999


Q ss_pred             HHHHHHhhcCCCCccccCC--CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEe-ec-ChH
Q 042445          151 DKCCDRLKEIPCITCPKKP--EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITF-AV-EPS  226 (246)
Q Consensus       151 ~~l~~~L~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~-~~-~~~  226 (246)
                      +.+.+.|+++ |+..+..+  ..+...++.++...  .+  +...+.+.|+++||.+.||..+ ..+++|+++ +. +.+
T Consensus       274 ~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~v~~~L~~~gi~v~~g~~~-~~~~iRi~~~~~~~~e  347 (363)
T TIGR02326       274 KTLVAGMRAL-GFEPLLDDEIQSPIITSFYSPEDP--DY--RFADFYQRLKEQGFVIYPGKVS-QVDCFRIGNIGEVDAA  347 (363)
T ss_pred             HHHHHHHHHc-CCeeccCcccCCceEEEEECCCCC--CC--CHHHHHHHHHHCCEEEECCcCC-CCCEEEEecCCCCCHH
Confidence            9999999887 55533222  34556676665420  01  3344556678889999998765 358999996 43 899


Q ss_pred             HHHHHHHHHHHHH
Q 042445          227 ALENGLGRMKAFY  239 (246)
Q Consensus       227 ~l~~~~~~l~~~~  239 (246)
                      +++++++.|++++
T Consensus       348 dv~~~l~~l~~~l  360 (363)
T TIGR02326       348 DITRLLTAIGKAM  360 (363)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998875

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=99.78  E-value=3.9e-17  Score=138.34  Aligned_cols=205  Identities=17%  Similarity=0.145  Sum_probs=136.1

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccccccc-ccCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRG-IVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~g~r~G~   90 (246)
                      ++++|+||||...+   +++|.++|+++|+++|+|+++..   +..+ ..+...+   .-+++.|++|.+ +.+|  +||
T Consensus       136 ~~~~~~~~tG~~~~---~~~i~~l~~~~~~~livDa~~~~---g~~~-~~~~~~~---~d~~v~s~~K~l~g~~G--~G~  203 (368)
T PRK13479        136 ALVHCETTTGILNP---LDEIAAVAKRHGKRLIVDAMSSF---GAIP-IDIAELG---IDALISSANKCIEGVPG--FGF  203 (368)
T ss_pred             EEEcccCccccccC---HHHHHHHHHHcCCEEEEEccccc---CCcc-ccccccC---ceEEEecCccccccCCC--ceE
Confidence            68899999999988   67888999999999999966532   2212 2222222   226668999964 6678  699


Q ss_pred             EEeeCCCCCcchhhHHHHHHHHhhh------------------cCCCCchHHHHHHHHHhhchH-HHHHHHHHHHHHHHH
Q 042445           91 LVTSDPNGILQDSGIVDSIKIFLNI------------------SSDPATFIQGAVPQILEKTEE-EFFSKIIDILRETAD  151 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~~~~------------------~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~  151 (246)
                      +++++        ++++.+......                  .++++...+.++..++..-.+ .++++..+++.++++
T Consensus       204 l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~~~~  275 (368)
T PRK13479        204 VIARR--------SELEACKGNSRSLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPARGARYANNQR  275 (368)
T ss_pred             EEECH--------HHHHHhhcCCCCeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Confidence            99988        777766543110                  124555566666666653222 346777788999999


Q ss_pred             HHHHHhhcCCCCccccCCC--CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEe-ec-ChHH
Q 042445          152 KCCDRLKEIPCITCPKKPE--GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITF-AV-EPSA  227 (246)
Q Consensus       152 ~l~~~L~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~-~~-~~~~  227 (246)
                      .+.+.|+++ |+..+..+.  .+....+.++...  +.  +.+.+.+.|.++||.+.+|..+ ..+++|++. +. ++++
T Consensus       276 ~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~l~~~L~~~gi~v~~g~~~-~~~~iRis~~~~~t~ed  349 (368)
T PRK13479        276 TLVAGMRAL-GFEPLLDAEIQSPIIVTFHAPADP--AY--DFKEFYERLKEQGFVIYPGKLT-QVDTFRIGCIGDVDAAD  349 (368)
T ss_pred             HHHHHHHHc-CCcccCCchhcCceEEEEECCCCC--Cc--CHHHHHHHHHHCCEEEecCCCC-CCCEEEEecCCCCCHHH
Confidence            999999887 565332221  1222222233210  11  3344556677889999987644 257899986 43 8999


Q ss_pred             HHHHHHHHHHHHHHH
Q 042445          228 LENGLGRMKAFYDRH  242 (246)
Q Consensus       228 l~~~~~~l~~~~~~~  242 (246)
                      ++++++.|++++++.
T Consensus       350 i~~~l~~L~~~l~~~  364 (368)
T PRK13479        350 IRRLVAAIAEALYWM  364 (368)
T ss_pred             HHHHHHHHHHHHHHc
Confidence            999999999998764

>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed

Probab=99.78  E-value=2.2e-17  Score=140.75  Aligned_cols=142  Identities=13%  Similarity=0.157  Sum_probs=101.1

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.++++    ++++|+||||.+++   +++|.++|+++|+++|+|++|+...+..    +. .+   +..+++.|+
T Consensus       141 e~l~~ai~~~tklV~lesp~NptG~v~d---l~~I~~la~~~gi~lvvD~a~a~~~~~~----~~-~~---gaDivv~S~  209 (398)
T PRK07504        141 DNWEKAVRPNTKVFFLESPTNPTLEVID---IAAVAKIANQAGAKLVVDNVFATPLFQK----PL-EL---GAHIVVYSA  209 (398)
T ss_pred             HHHHHhcCcCceEEEEECCCCCCcEecC---HHHHHHHHHHcCCEEEEECCccccccCC----ch-hh---CCCEEEeec
Confidence            4556666654    88999999999998   8888899999999999999998655321    11 12   234789999


Q ss_pred             ccccccCCceEEE-EEeeCCCCCcchhhHHH-HHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 042445           78 SKRGIVPGLRLGW-LVTSDPNGILQDSGIVD-SIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCC  154 (246)
Q Consensus        78 sK~~~~~g~r~G~-i~~~~~~~~~~~~~~~~-~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~  154 (246)
                      ||.++++|+++|+ +++++        +.+. .++.. ...+..++++..+.+.+.|+.     +..+.++..++.+.+.
T Consensus       210 sK~l~g~g~~~GG~vv~~~--------~~i~~~~~~~~~~~g~~~s~~~A~~~l~~L~t-----l~~R~~~~~~na~~la  276 (398)
T PRK07504        210 TKHIDGQGRCLGGVVLSDK--------AWIEEHLQDYFRHTGPSLSPFNAWTLLKGLET-----LPVRVRQQTESAAAIA  276 (398)
T ss_pred             cccccCCccceEEEEEeCc--------HHHHHHHHHHHHHhCCCCCHHHHHHHHhccch-----HHHHHHHHHHHHHHHH
Confidence            9999999999975 44554        5554 34443 333435666666666555553     5666666678999999


Q ss_pred             HHhhcCCCCcccc
Q 042445          155 DRLKEIPCITCPK  167 (246)
Q Consensus       155 ~~L~~~~~~~~~~  167 (246)
                      +.|+++|++..+.
T Consensus       277 ~~L~~~p~v~~v~  289 (398)
T PRK07504        277 DFLAGHPKVARVI  289 (398)
T ss_pred             HHHHcCCCccEEE
Confidence            9999887765333

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=99.78  E-value=2e-17  Score=140.06  Aligned_cols=145  Identities=14%  Similarity=0.146  Sum_probs=107.0

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.++++    ++.+|+||+|.+.+   +++|.++|+++|+++|+|++|+...+..    ++ .+   ...+++.|+
T Consensus       116 ~~l~~~i~~~~~~v~~e~~~np~g~~~d---l~~i~~la~~~g~~livD~t~~~~~~~~----~~-~~---g~Divv~S~  184 (369)
T cd00614         116 EALEAAIKPETKLVYVESPTNPTLKVVD---IEAIAELAHEHGALLVVDNTFATPYLQR----PL-EL---GADIVVHSA  184 (369)
T ss_pred             HHHHHhcCCCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcchhcCC----hh-hh---CCcEEEecc
Confidence            4455556543    77899999999987   8899999999999999999998654321    11 11   234889999


Q ss_pred             ccccccCC-ceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445           78 SKRGIVPG-LRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD  155 (246)
Q Consensus        78 sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  155 (246)
                      ||.++++| .+.||+++++.       +++++++.... .+..+++....++.+.++.     +..+.++..++++.+.+
T Consensus       185 tK~l~g~~~~~gG~v~~~~~-------~l~~~l~~~~~~~g~~~~p~~a~~~l~~l~t-----l~~r~~~~~~na~~la~  252 (369)
T cd00614         185 TKYIGGHSDVIAGVVVGSGE-------ALIQRLRFLRLALGTILSPFDAWLLLRGLKT-----LPLRMERHSENALKVAE  252 (369)
T ss_pred             ceeccCCCCceEEEEEeCcH-------HHHHHHHHHHHhhCCCCCHHHHHHHHcCCCC-----HHHHHHHHHHHHHHHHH
Confidence            99998876 88999999763       67777776643 4446777777776666652     45567777889999999


Q ss_pred             HhhcCCCCccccCC
Q 042445          156 RLKEIPCITCPKKP  169 (246)
Q Consensus       156 ~L~~~~~~~~~~~~  169 (246)
                      .|+++|++..+..|
T Consensus       253 ~L~~~~~v~~V~~p  266 (369)
T cd00614         253 FLEKHPKVERVYYP  266 (369)
T ss_pred             HHHcCCCccEEECC
Confidence            99988776544444

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=99.78  E-value=3.6e-17  Score=138.77  Aligned_cols=145  Identities=14%  Similarity=0.208  Sum_probs=110.0

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      |.+++.++++    ++++||||||.+++   +++|.++|+++|+++|+|++|......    .++ .++.   -++++|+
T Consensus       128 e~l~~~l~~~tklV~l~sP~NPtG~v~d---i~~I~~ia~~~g~~vivDeay~~~~~~----~pl-~~ga---Divv~S~  196 (386)
T PRK08045        128 QALRAALAEKPKLVLVESPSNPLLRVVD---IAKICHLAREAGAVSVVDNTFLSPALQ----NPL-ALGA---DLVLHSC  196 (386)
T ss_pred             HHHHHhcccCCeEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCCccccC----Cch-hhCC---CEEEeec
Confidence            3455555443    88999999999998   678888899999999999999865432    122 1222   2889999


Q ss_pred             cccccc-CCceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445           78 SKRGIV-PGLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD  155 (246)
Q Consensus        78 sK~~~~-~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  155 (246)
                      +|.+++ ++.+.|++++.+.       +++++++.... .+..++++.+..+.+.|+.     +..+.++..+++..+.+
T Consensus       197 tK~l~G~~d~~~G~vi~~~~-------~~~~~l~~~~~~~g~~~~p~~~~l~~rgl~t-----l~~R~~~~~~na~~la~  264 (386)
T PRK08045        197 TKYLNGHSDVVAGVVIAKDP-------DVVTELAWWANNIGVTGGAFDSYLLLRGLRT-----LVPRMELAQRNAQAIVK  264 (386)
T ss_pred             ceeccCCCCceeEEEEeCcH-------HHHHHHHHHHHhcCCCCCHHHHHHHHhhhcc-----HHHHHHHHHHHHHHHHH
Confidence            999874 5688999988553       77777765533 4557899999999888884     88888889999999999


Q ss_pred             HhhcCCCCccccCC
Q 042445          156 RLKEIPCITCPKKP  169 (246)
Q Consensus       156 ~L~~~~~~~~~~~~  169 (246)
                      .|+..|.+..+..|
T Consensus       265 ~L~~~p~v~~V~yp  278 (386)
T PRK08045        265 YLQTQPLVKKLYHP  278 (386)
T ss_pred             HHHcCCCEeEEECC
Confidence            99988776544333

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=99.78  E-value=1.3e-17  Score=142.60  Aligned_cols=206  Identities=12%  Similarity=0.039  Sum_probs=131.2

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.+.++    ++++|+||||.+.+   +++|.++|+++|+++++|+++....    ....   +...+.-+++.|+
T Consensus       147 ~~l~~~i~~~~~lv~i~~~~n~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~~~~----~~~~---~~~~~~d~~~~s~  216 (397)
T TIGR01976       147 DDLASLLSPRTRLVAVTAASNTLGSIVD---LAAITELVHAAGALVVVDAVHYAPH----GLID---VQATGADFLTCSA  216 (397)
T ss_pred             HHHHHhcCCCceEEEEeCCCCCCCccCC---HHHHHHHHHHcCCEEEEehhhhccc----cCCC---HHHcCCCEEEEec
Confidence            3455555543    88899999999986   8889999999999999999975311    1111   1112233666899


Q ss_pred             ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhc-----------CCCCchHHHHHHH---HHhhch--------
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNIS-----------SDPATFIQGAVPQ---ILEKTE--------  135 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~~~q~~~~~---~l~~~~--------  135 (246)
                      +|.+|   .|+||+++++        ++++.+......+           ++.+.....++..   .+....        
T Consensus       217 ~K~~g---~~~G~l~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~  285 (397)
T TIGR01976       217 YKFFG---PHMGILWGRP--------ELLMNLPPYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRR  285 (397)
T ss_pred             hhhcC---CceEEEEEcH--------HHHhhCCCccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchh
Confidence            99963   4689999988        7777665432111           0122222222333   332211        


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHHHhhcCCCCccccC---CCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCC
Q 042445          136 ---EEFFSKIIDILRETADKCCDRLKEIPCITCPKK---PEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGI  209 (246)
Q Consensus       136 ---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~  209 (246)
                         ..+.++.+++..+.++.+.+.|++++++..+..   ...+.++.+.++..       +...+.+.|.++||.+..|.
T Consensus       286 ~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~L~~~gI~v~~~~  358 (397)
T TIGR01976       286 ERLVASFQAIDAYENRLAEYLLVGLSDLPGVTLYGVARLAARVPTVSFTVHGL-------PPQRVVRRLADQGIDAWAGH  358 (397)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccCCCceEEEEeCCc-------CHHHHHHHHHHCCeEEEeCc
Confidence               013566677778888899999988866764322   11344555555421       23445566788999999886


Q ss_pred             CcC-----------CCCeEEEEeec--ChHHHHHHHHHH
Q 042445          210 TVG-----------LKDWLRITFAV--EPSALENGLGRM  235 (246)
Q Consensus       210 ~f~-----------~~~~iRls~~~--~~~~l~~~~~~l  235 (246)
                      .|.           ..+++|+|+..  ++++++++++.|
T Consensus       359 ~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l  397 (397)
T TIGR01976       359 FYAVRLLRRLGLNDEGGVVRVGLAHYNTAEEVDRLLEAL  397 (397)
T ss_pred             cchHHHHHHhCCCCCCCeEEEEeeccCCHHHHHHHHHhC
Confidence            653           14689999984  788888887653

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=99.78  E-value=1.9e-17  Score=142.95  Aligned_cols=204  Identities=19%  Similarity=0.196  Sum_probs=138.0

Q ss_pred             cc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCCC
Q 042445           21 GS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGI   99 (246)
Q Consensus        21 G~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~   99 (246)
                      |. ..+.+++++|.++|++||+++|+||+|.++...|..+.. ..++   ....+.|+||.++ +|+++|++++++    
T Consensus       221 G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~~~~~-~~~g---v~pDi~t~sK~lg-~G~pigav~~~~----  291 (433)
T PRK08117        221 GYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFAA-QTFG---VVPDIMTIAKGIA-SGLPLSAVVASK----  291 (433)
T ss_pred             CCccCCHHHHHHHHHHHHHcCCEEEEecchhccCccccchhH-hhcC---CCCCEeehhhhcc-CCCcceeEEEcH----
Confidence            44 457899999999999999999999999988776653321 2222   1123579999986 789999999988    


Q ss_pred             cchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc----CCCCccccCCCCceE
Q 042445          100 LQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKE----IPCITCPKKPEGSMF  174 (246)
Q Consensus       100 ~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~g~~  174 (246)
                          ++++.+... ...+++.||++++++.+.|+.....   ...+.++++.+.+.+.|++    .+ +. ...+..|.+
T Consensus       292 ----~i~~~~~~~~~~~T~~~np~~~aaa~a~L~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~-~~-~~vrg~Gl~  362 (433)
T PRK08117        292 ----ELMEQWPLGSHGTTFGGNPVACAAALATLEVIKEE---KLLDNANEMGAYALERLEVLKEKHP-VI-GDVRGIGLM  362 (433)
T ss_pred             ----HHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHhcCC-ce-eeeecCCcE
Confidence                888877543 3344578999999999999843221   2333344444445554443    32 21 123455777


Q ss_pred             EEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHHHHHHhh
Q 042445          175 VMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAFYDRHAE  244 (246)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~~~~~~  244 (246)
                      +.+.+..............+.+.+.++||.+.+...  ..+.+|+++.  .+++++++++++|.+++++..+
T Consensus       363 ~gi~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~g~--~~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~~~~  432 (433)
T PRK08117        363 IGIEIVDPDGEPDGDAVEKILDKCLEKGLLFYLCGN--AGNVLRMIPPLTVTKEEIDEGLDILDEALTEYEA  432 (433)
T ss_pred             EEEEEecCCCCcchHHHHHHHHHHHHCCCEEeecCC--CCCEEEEeCCccCCHHHHHHHHHHHHHHHHHHhc
Confidence            777775321000001344556677889998876321  2579999965  4999999999999999987654

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=99.78  E-value=1.6e-17  Score=140.93  Aligned_cols=207  Identities=14%  Similarity=0.110  Sum_probs=137.0

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      |.+++.+.++    ++++|+||||.+.+   +++|.++|+++|+++++|++|......    ..+...+   ..+++.|+
T Consensus       130 ~~l~~~l~~~~~~v~~~~~~~~tG~~~~---~~~i~~~~~~~~~~li~D~a~~~~~~~----~~~~~~~---~d~~~~s~  199 (373)
T cd06453         130 EALEKLLTERTKLVAVTHVSNVLGTINP---VKEIGEIAHEAGVPVLVDGAQSAGHMP----VDVQDLG---CDFLAFSG  199 (373)
T ss_pred             HHHHHHhcCCceEEEEeCcccccCCcCC---HHHHHHHHHHcCCEEEEEhhhhcCcee----eeccccC---CCEEEecc
Confidence            3455555433    77899999999988   678999999999999999998743321    1111121   23666788


Q ss_pred             ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh---------------------h-cCCCCchHHHHHHHHHhhch
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN---------------------I-SSDPATFIQGAVPQILEKTE  135 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~---------------------~-~~~~~~~~q~~~~~~l~~~~  135 (246)
                      +|.+++  .++||+++++        ++++.+.....                     + ..+++.....++..++....
T Consensus       200 ~K~~~~--~g~g~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~  269 (373)
T cd06453         200 HKMLGP--TGIGVLYGKE--------ELLEEMPPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLE  269 (373)
T ss_pred             ccccCC--CCcEEEEEch--------HHhhcCCCeecCCCccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHHH
Confidence            899876  4589999987        77766654321                     0 01233344445455555322


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC-CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcC--
Q 042445          136 EEFFSKIIDILRETADKCCDRLKEIPCITCPKKP-EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG--  212 (246)
Q Consensus       136 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~--  212 (246)
                      +..+++.++..++.++.+.+.|++++++..+..+ ..+.++++.++..       +...+.+.|.++||.+.+|..|.  
T Consensus       270 ~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~~l~~~gi~i~~g~~~~~~  342 (373)
T cd06453         270 KIGMEAIAAHEHELTAYALERLSEIPGVRVYGDAEDRAGVVSFNLEGI-------HPHDVATILDQYGIAVRAGHHCAQP  342 (373)
T ss_pred             HcCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCeEEEEECCc-------CHHHHHHHHHHCCEEeccCccchhH
Confidence            3345677777788889999999888777643221 1244566656431       33445666778999998877543  


Q ss_pred             ------CCCeEEEEeec--ChHHHHHHHHHH
Q 042445          213 ------LKDWLRITFAV--EPSALENGLGRM  235 (246)
Q Consensus       213 ------~~~~iRls~~~--~~~~l~~~~~~l  235 (246)
                            .++++|+|++.  ++++++++++.|
T Consensus       343 ~~~~~~~~~~iRis~~~~~t~~di~~~~~~l  373 (373)
T cd06453         343 LMRRLGVPGTVRASFGLYNTEEEIDALVEAL  373 (373)
T ss_pred             HHHHhCCCCeEEEEecCCCCHHHHHHHHhhC
Confidence                  26899999995  888898888753

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>PRK08776 cystathionine gamma-synthase; Provisional

Probab=99.77  E-value=1.1e-16  Score=136.58  Aligned_cols=144  Identities=15%  Similarity=0.120  Sum_probs=105.6

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.++++    ++++|+||||.+.+   +++|.++|+++|+++|+|++|.....    ..++. ++.   -+++.|.
T Consensus       136 ~~l~~~i~~~tklV~l~~P~NPtG~v~d---l~~I~~la~~~gi~vIvD~a~a~~~~----~~pl~-~ga---Divv~S~  204 (405)
T PRK08776        136 RSLADALAQSPKLVLIETPSNPLLRITD---LRFVIEAAHKVGALTVVDNTFLSPAL----QKPLE-FGA---DLVLHST  204 (405)
T ss_pred             HHHHHhcCcCCeEEEEECCCCCCCccCC---HHHHHHHHHHcCCEEEEECCCccccc----CCccc-ccC---CEEEecC
Confidence            3455555443    88899999999854   89999999999999999999985332    12221 221   2889999


Q ss_pred             ccccccC-CceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445           78 SKRGIVP-GLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD  155 (246)
Q Consensus        78 sK~~~~~-g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  155 (246)
                      +|.++++ ++..|++++++.       ++.+++..... .+..++++.+.++.+.++     +++.+.+...+++..+.+
T Consensus       205 tK~l~g~~~~~~G~vv~~~~-------~l~~~l~~~~~~~g~~~s~~~a~l~~~gl~-----tl~~r~~~~~~na~~la~  272 (405)
T PRK08776        205 TKYINGHSDVVGGAVVARDA-------ELHQQLVWWANALGLTGSPFDAFLTLRGLR-----TLDARLRVHQENADAIAA  272 (405)
T ss_pred             ceeecCCCCceEEEEEeCCH-------HHHHHHHHHHHhcCCCCCHHHHHHHHhhhC-----cHHHHHHHHHHHHHHHHH
Confidence            9999876 478899888653       77777765533 333578888877765555     578888889999999999


Q ss_pred             HhhcCCCCccccC
Q 042445          156 RLKEIPCITCPKK  168 (246)
Q Consensus       156 ~L~~~~~~~~~~~  168 (246)
                      .|++.|.+..+..
T Consensus       273 ~L~~~p~v~~V~y  285 (405)
T PRK08776        273 LLDGHAAVNQVYY  285 (405)
T ss_pred             HHHcCCCeeEEEC
Confidence            9998876654333

>PRK07582 cystathionine gamma-lyase; Validated

Probab=99.77  E-value=7.3e-17  Score=136.27  Aligned_cols=194  Identities=15%  Similarity=0.203  Sum_probs=130.6

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccccccccc-CCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIV-PGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-~g~r~G~   90 (246)
                      ++++|+||||.+.+   +++|.++|+++|+++|+|++|.... +   ..++. ++.   -++++|+||.+++ +|+++||
T Consensus       137 ~le~p~NPtg~v~d---i~~I~~~a~~~g~~lvVD~t~~~~~-~---~~p~~-~g~---Divv~S~sK~l~G~~g~~~G~  205 (366)
T PRK07582        137 LAETPSNPGLDVCD---LAALAAAAHAAGALLVVDNTTATPL-G---QRPLE-LGA---DLVVASDTKALTGHSDLLLGY  205 (366)
T ss_pred             EEECCCCCCCCccC---HHHHHHHHHHcCCEEEEECCCCCcc-c---cCchh-cCC---cEEEecccccccCCCCeeEEE
Confidence            78899999997765   8999999999999999999997422 1   11221 221   2788999999865 6799999


Q ss_pred             EEeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445           91 LVTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKP  169 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~  169 (246)
                      +++++.       ++.++++..... +..++++....+.+.+..     +..+.++.+++...+.+.|+++|.+..+..|
T Consensus       206 v~~~~~-------~l~~~l~~~~~~~g~~~~~~~a~l~~r~l~t-----l~~R~~~~~~na~~la~~L~~~p~v~~v~yp  273 (366)
T PRK07582        206 VAGRDP-------ELMAAVERWRLLAGAIPGPFEAWLAHRSLGT-----LGLRFARQCANALAVAELLAGHPAVRGVRYP  273 (366)
T ss_pred             EEcCcH-------HHHHHHHHHHHHhCCCCCHHHHHHHHhcccc-----HHHHHHHHHHHHHHHHHHHHhCCCccEEECC
Confidence            998643       777777766443 446788888777777763     4555566778999999999988776543322


Q ss_pred             C----------------CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC----------------CCeE
Q 042445          170 E----------------GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL----------------KDWL  217 (246)
Q Consensus       170 ~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----------------~~~i  217 (246)
                      .                .|-.+.++++         +.+.+.+++.+.++... +..++.                ++.|
T Consensus       274 ~l~~~p~~~~~~~~~~~~gg~~s~~~~---------~~~~~~~~~~~l~~~~~-~~s~G~~~sl~~~~~~~~~~~~~~li  343 (366)
T PRK07582        274 GLPGDPAHEVAARQMRRFGGLVSFELA---------DAAAAERFVAASRLVVA-ATSFGGVHTSADRRARWGDAVPEGFV  343 (366)
T ss_pred             CCCCCccHHHHHhhCCCCcceEEEEeC---------CHHHHHHHHHhCCccee-cccCCCccchhhhHHHcCCCCCCCeE
Confidence            1                2334444454         23445666777776443 222221                4679


Q ss_pred             EEEeecChHHHHHHHHHHHHHHH
Q 042445          218 RITFAVEPSALENGLGRMKAFYD  240 (246)
Q Consensus       218 Rls~~~~~~~l~~~~~~l~~~~~  240 (246)
                      |+|++.++  .+..++.|.++++
T Consensus       344 R~svGlE~--~~dli~dl~~al~  364 (366)
T PRK07582        344 RLSCGIED--TDDLVADLERALD  364 (366)
T ss_pred             EEEeccCC--HHHHHHHHHHHHh
Confidence            99999743  2445556666654

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=99.77  E-value=5.1e-17  Score=138.24  Aligned_cols=144  Identities=17%  Similarity=0.172  Sum_probs=99.3

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.++++    ++++|+||||.+.+   +++|.++|+++|+++|+|++|.......    ++ ..+   ..++++|+
T Consensus       137 ~~l~~~i~~~tklV~ie~p~NptG~v~d---l~~I~~la~~~gi~livD~t~~~~~~~~----pl-~~g---~Divv~S~  205 (390)
T PRK08133        137 DAWRAAVRPNTKLFFLETPSNPLTELAD---IAALAEIAHAAGALLVVDNCFCTPALQQ----PL-KLG---ADVVIHSA  205 (390)
T ss_pred             HHHHHhcCcCCeEEEEECCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCCcccccCC----ch-hhC---CcEEEeec
Confidence            3455566554    77899999999986   7899999999999999999987544321    11 112   23789999


Q ss_pred             ccccccCCceEE-EEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445           78 SKRGIVPGLRLG-WLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD  155 (246)
Q Consensus        78 sK~~~~~g~r~G-~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  155 (246)
                      ||.++++|.++| |+++++        ++++.+..... ....+++..+.++.+-++     .+..+.++..+++..+.+
T Consensus       206 sK~~~g~g~~~GG~vv~~~--------~~~~~~~~~~~~~g~~~~~~~a~~~l~gl~-----tl~~R~~~~~~~a~~la~  272 (390)
T PRK08133        206 TKYLDGQGRVLGGAVVGSK--------ELMEEVFGFLRTAGPTLSPFNAWVFLKGLE-----TLSLRMEAHSANALALAE  272 (390)
T ss_pred             ceeecCCcceEeEEEEcCH--------HHHHHHHHHHHHhCCCCCHHHHHHHHcccc-----hHHHHHHHHHHHHHHHHH
Confidence            999999999985 455555        77777765433 332445555444433332     466666667789999999


Q ss_pred             HhhcCCCCccccCC
Q 042445          156 RLKEIPCITCPKKP  169 (246)
Q Consensus       156 ~L~~~~~~~~~~~~  169 (246)
                      .|++.|++..+..|
T Consensus       273 ~L~~~p~v~~v~yp  286 (390)
T PRK08133        273 WLEAHPGVERVFYP  286 (390)
T ss_pred             HHHhCCCeeEEECC
Confidence            99988776543333

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=99.77  E-value=6.3e-17  Score=135.29  Aligned_cols=189  Identities=18%  Similarity=0.133  Sum_probs=139.6

Q ss_pred             hHHHHHHHHHHcCCEEEEccccCCcccCCCCCcccc--ccCCcccEEEEcccccccccCCceEEEEEeeCCCCCcchhhH
Q 042445           28 FVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMG--VFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQDSGI  105 (246)
Q Consensus        28 ~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~--~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~  105 (246)
                      .+++|++++++|++++++||+|+...+++.+-....  .+.+.+..|.++||||+||..|   ||+.++.        .+
T Consensus       189 pL~~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlGs~G---g~v~g~~--------~~  257 (388)
T COG0156         189 PLPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGSSG---GYIAGSA--------AL  257 (388)
T ss_pred             CHHHHHHHHHHhCcEEEEEccccccccCCCCccHHHHhCCCCccceEEEEEchhhhcccC---ceeeCcH--------HH
Confidence            499999999999999999999999998865444433  3344556899999999999999   9999999        99


Q ss_pred             HHHHHHH-hh--hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEeccc
Q 042445          106 VDSIKIF-LN--ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYS  182 (246)
Q Consensus       106 ~~~l~~~-~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~  182 (246)
                      ++.+++. ..  ++++.+|....++..+++  ......+.+++++++.+.+.+.++.. ++..  .+.....+.+.+.+.
T Consensus       258 ~d~L~~~ar~~ifStalpP~~aaa~~~al~--~l~~~~~~r~~L~~~~~~~~~~~~~~-~~~~--~~s~s~I~pv~~gd~  332 (388)
T COG0156         258 IDYLRNRARPFIFSTALPPAVAAAALAALR--ILEEGPERRERLQELAAFFRSLLKAL-GLVL--LPSESPIIPVILGDE  332 (388)
T ss_pred             HHHHHHhCCceeccCCCCHHHHHHHHHHHH--HHHhCHHHHHHHHHHHHHHHHHHHhc-CCcc--CCCCCCeeeeEeCCH
Confidence            9999886 44  333566766666777776  34456677788888888888776665 4432  455566666656553


Q ss_pred             cccCCCChHHHHHHHHHhcCeEEecCCCcCC---CCeEEEEeec--ChHHHHHHHHHHHHH
Q 042445          183 LLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFAV--EPSALENGLGRMKAF  238 (246)
Q Consensus       183 ~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~iRls~~~--~~~~l~~~~~~l~~~  238 (246)
                      .     ...+....++ +.||.+.+..+...   ...+|++++.  ++++++.+++.|.+.
T Consensus       333 ~-----~a~~~s~~l~-~~Gi~v~~i~~PTVp~gtarlRi~lta~ht~~~I~~l~~~l~~~  387 (388)
T COG0156         333 E-----RALEASRALL-EEGIYVSAIRPPTVPKGTARLRITLTAAHTEEDIDRLAEALSEV  387 (388)
T ss_pred             H-----HHHHHHHHHH-HCCeeEeeecCCCCCCCcceEEEEecCCCCHHHHHHHHHHHHhh
Confidence            2     1455555544 55999987655443   5889999995  899999988888754

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=99.77  E-value=3.8e-17  Score=140.00  Aligned_cols=198  Identities=15%  Similarity=0.097  Sum_probs=132.6

Q ss_pred             CCCcc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCcc-ccccCCcccEEEEcccccccccCCceEEEEEeeC
Q 042445           18 FHVGS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVS-MGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSD   95 (246)
Q Consensus        18 NPtG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~-~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~   95 (246)
                      ++.|. ++|.+++++|.++|++||+++|+||+++++...|..+.. ...+.++     +.++||.++..|+|+|++++++
T Consensus       205 g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~~v~PD-----i~~~~K~lg~~G~pigav~~~~  279 (412)
T TIGR02407       205 GEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSFEPAGIEPD-----IVCLSKSISGYGLPLALTLIKP  279 (412)
T ss_pred             CCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhHHhcccCCCCC-----EEEechhccCCccceeEEEEch
Confidence            67787 678899999999999999999999999988666543321 1223332     4468899754499999999987


Q ss_pred             CCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhh-ch----HHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445           96 PNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEK-TE----EEFFSKIIDILRETADKCCDRLKEIPCITCPKKP  169 (246)
Q Consensus        96 ~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~-~~----~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~  169 (246)
                              ++ +.+... ...+++.|+++..++.+.++. ..    .+++.+..+.++++.+.+.   ++++++. ...+
T Consensus       280 --------~~-~~~~~~~~~~T~~gnpl~~aaa~a~l~~~i~~~~l~~~~~~~g~~l~~~l~~l~---~~~~~~~-~~vr  346 (412)
T TIGR02407       280 --------EL-DVWKPGEHNGTFRGNNLAFVTATAALEYYWSDDAFEKAVQRKSEIIQERLDRIV---AEYPELI-KQVR  346 (412)
T ss_pred             --------hh-hccCCCccCCCCCccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH---hhCCCce-Eeee
Confidence                    54 433222 333557788877776666662 21    1233333333333333322   2344322 2345


Q ss_pred             CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHH
Q 042445          170 EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDR  241 (246)
Q Consensus       170 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~  241 (246)
                      ..|+++|++++...      ....+...+.++||.+.+...+  ++.||++...  ++++++++++.|.+.+++
T Consensus       347 g~Gl~~~l~l~~~~------~~~~~~~~~~~~Gv~v~~~~~~--~~~lr~~p~l~~t~~~i~~~~~~l~~~l~~  412 (412)
T TIGR02407       347 GRGLMQGIECGDGD------LAGKIAKAAFENGLIIETSGPN--DEVIKLLPPLTIDEETLQQGLDILEQAVEE  412 (412)
T ss_pred             cceeEEEEEecChH------HHHHHHHHHHHCCCEEeccCCC--CCEEEEECCCCCCHHHHHHHHHHHHHHHhC
Confidence            67899999997532      3445566777899999874322  5789999884  999999999999998853

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase

Probab=99.77  E-value=4.5e-17  Score=138.06  Aligned_cols=145  Identities=15%  Similarity=0.197  Sum_probs=106.0

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.++++    ++++||||||.+++   +++|.++|+++|+++|+|++|..+....    ++ .++.   .++++|+
T Consensus       127 ~~l~~ai~~~tklV~l~~p~NPtG~~~d---l~~I~~la~~~g~~vvvD~a~~~~~~~~----pl-~~ga---Divv~S~  195 (382)
T TIGR02080       127 QALRAALAQKPKLVLIETPSNPLLRVVD---IAKICHLAKAVGAVVVVDNTFLSPALQN----PL-ALGA---DLVLHSC  195 (382)
T ss_pred             HHHHHhcCcCceEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCcccccCC----ch-hhCC---CEEEeec
Confidence            3455666543    88899999999988   6788888999999999999998654321    11 1221   2888999


Q ss_pred             cccccc-CCceEEEEEeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445           78 SKRGIV-PGLRLGWLVTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD  155 (246)
Q Consensus        78 sK~~~~-~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  155 (246)
                      ||.+++ +|++.|++++.+.       ++.++++..... +..++++....+.+-++     .+..+.++..+++..+.+
T Consensus       196 sK~l~G~~~~~~G~i~~~~~-------~~~~~l~~~~~~~g~~~sp~~a~l~lr~l~-----tl~~R~~~~~~na~~~a~  263 (382)
T TIGR02080       196 TKYLNGHSDVIAGAVIAKDP-------QVAEELAWWANNLGVTGGAFDSYLTLRGLR-----TLVARMRLQQRNAQAIVE  263 (382)
T ss_pred             ceeccCCCCceeEEEEeCCH-------HHHHHHHHHHHccCCCCCHHHHHHHHcccc-----hHHHHHHHHHHHHHHHHH
Confidence            999874 6789999988653       777878766443 44678888777755554     355556677899999999


Q ss_pred             HhhcCCCCccccCC
Q 042445          156 RLKEIPCITCPKKP  169 (246)
Q Consensus       156 ~L~~~~~~~~~~~~  169 (246)
                      .|+..|.+..+..|
T Consensus       264 ~L~~~p~v~~V~yP  277 (382)
T TIGR02080       264 YLQTQPLVKKIYYP  277 (382)
T ss_pred             HHHhCCCeeEEECC
Confidence            99987766543333

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=99.76  E-value=7.2e-17  Score=139.53  Aligned_cols=210  Identities=20%  Similarity=0.153  Sum_probs=139.6

Q ss_pred             cccCCcCCCc-c-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEE
Q 042445           12 FSDFQVFHVG-S-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLG   89 (246)
Q Consensus        12 ~~~~p~NPtG-~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G   89 (246)
                      ++.-|-++.| . .++++++++|.++|++||+++|.||++.++...|..+ ....++-...++   +++|.++ .|+++|
T Consensus       223 vi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~~f-a~~~~gv~PDiv---~~gK~l~-~G~Pi~  297 (443)
T PRK06058        223 VIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWF-ACEHEGIVPDLI---TTAKGIA-GGLPLS  297 (443)
T ss_pred             EEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChhhh-HHHhcCCCCCEE---EEccccc-CCCccE
Confidence            6667766654 3 3568899999999999999999999999987766433 222222222333   4579986 789999


Q ss_pred             EEEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc----CCCCc
Q 042445           90 WLVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKE----IPCIT  164 (246)
Q Consensus        90 ~i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~  164 (246)
                      ++++++        ++++.+... ...+++.|+++++++.+.|+...+.   ...+..+++.+.+.+.|++    .+.+.
T Consensus       298 av~~~~--------~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~i~  366 (443)
T PRK06058        298 AVTGRA--------EIMDAPHPGGLGGTYGGNPVACAAALAAIETIEED---DLVARARQIEALMTDRLRALAAEDDRIG  366 (443)
T ss_pred             EEEEcH--------HHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHHc---CHHHHHHHHHHHHHHHHHHHHhhCCcEE
Confidence            999998        888877644 4456689999999999999853222   2334444455555555554    33222


Q ss_pred             cccCCCCceEEEEEecccccc-CCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHHHHH
Q 042445          165 CPKKPEGSMFVMVKLNYSLLE-GINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAFYDR  241 (246)
Q Consensus       165 ~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~~~  241 (246)
                       -+...|.++ .+.+....-. ........+...+.++||.+.|+..+  .+++|+...  .+++++++++++|.+++++
T Consensus       367 -~vrg~G~~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~~~~~~~~--~~~lr~~Ppl~~t~~~i~~~~~~l~~~l~~  442 (443)
T PRK06058        367 -DVRGRGAMI-AIELVKPGTTEPDAELTKALAAAAHAAGVIVLTCGTY--GNVIRLLPPLVIGDELLREGLDVLEAALAD  442 (443)
T ss_pred             -eeeccceEE-EEEEecCCCCCCcHHHHHHHHHHHHHCCeEEeccCCC--CCEEEEECCCccCHHHHHHHHHHHHHHHHh
Confidence             234454444 4455321100 00011233445566899999986544  478999766  4999999999999999865

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=99.76  E-value=1.9e-16  Score=135.15  Aligned_cols=144  Identities=15%  Similarity=0.165  Sum_probs=107.4

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.++++    ++++|+||||.+.+   +++|.++|+++|+++|+|++|+...+.. +   + .++   .-+++.|+
T Consensus       146 ~~l~~ai~~~tklV~~esp~Nptg~v~d---l~~I~~la~~~g~~vivD~a~a~~~~~~-~---~-~~g---aDivv~S~  214 (403)
T PRK07810        146 SQWEEALSVPTQAVFFETPSNPMQSLVD---IAAVSELAHAAGAKVVLDNVFATPLLQR-G---L-PLG---ADVVVYSG  214 (403)
T ss_pred             HHHHHhcCcCceEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCCccccCC-h---h-hcC---CcEEEccC
Confidence            4566666654    88899999999986   8899999999999999999998655432 1   1 112   23889999


Q ss_pred             ccccccCCceE-EEEEeeCCCCCcchhhHHH-HHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 042445           78 SKRGIVPGLRL-GWLVTSDPNGILQDSGIVD-SIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCC  154 (246)
Q Consensus        78 sK~~~~~g~r~-G~i~~~~~~~~~~~~~~~~-~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~  154 (246)
                      +|.+++.|.++ |++++++        +.+. .++.. ...+..++++.++++.+.|+.     +..+.++..++...+.
T Consensus       215 tK~l~g~g~~~gG~v~~~~--------~~~~~~l~~~~~~~g~~~s~~~a~l~l~~L~t-----l~~R~~~~~~~a~~~a  281 (403)
T PRK07810        215 TKHIDGQGRVLGGAILGDR--------EYIDGPVQKLMRHTGPALSAFNAWVLLKGLET-----LALRVRHSNASALRIA  281 (403)
T ss_pred             CceecCCcCceeEEEEeCh--------HHHHHHHHHHHHHhCCCCCHHHHHHHHhccCc-----HHHHHHHHHHHHHHHH
Confidence            99999999887 7777766        5554 45544 334457888888888777774     6777777788888899


Q ss_pred             HHhhcCCCCccccCC
Q 042445          155 DRLKEIPCITCPKKP  169 (246)
Q Consensus       155 ~~L~~~~~~~~~~~~  169 (246)
                      +.|+++|.+..+..|
T Consensus       282 ~~L~~~p~v~~V~yP  296 (403)
T PRK07810        282 EFLEGHPAVRWVRYP  296 (403)
T ss_pred             HHHhcCCCccEEECC
Confidence            999988877654433

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.76  E-value=8.7e-17  Score=135.88  Aligned_cols=203  Identities=14%  Similarity=0.063  Sum_probs=127.3

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      ++++||||||...+   +++|.++|+++|+++|+|++|.....   ++ ....+   +..+++.|++|.+++ +.|+||+
T Consensus       144 ~l~~p~n~tG~~~~---~~~i~~~~~~~~~~vivD~a~~~g~~---~~-~~~~~---~~d~~~~s~~K~l~~-~~~~G~l  212 (361)
T cd06452         144 LLTHVDGNYGNLHD---AKKIAKVCHEYGVPLLLNGAYTVGRM---PV-SGKEL---GADFIVGSGHKSMAA-SAPIGVL  212 (361)
T ss_pred             EEECCCCCCeeecc---HHHHHHHHHHcCCeEEEECCcccCCc---CC-CHHHc---CCCEEEecCCccccC-CCCeEEE
Confidence            88999999998754   88999999999999999999984321   11 11112   245899999999864 4599999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhhhc---------CCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLNIS---------SDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPC  162 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~  162 (246)
                      ++++        ++++++......+         .+.+.....++...+.. ..+++++..+. .++++.+.+.|++++|
T Consensus       213 ~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~~~~~~~~~~~-~~~~~~l~~~L~~l~g  282 (361)
T cd06452         213 ATTE--------EWADIVFRTSQMFKIKEVELLGCTLRGAPLVTLMASFPH-VKERVKRWDEE-VEKARWFVAELEKIEG  282 (361)
T ss_pred             EECH--------HHHHHHhccccccccceeeeeccccCchHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHHHhcCCC
Confidence            9988        8888886643211         01112223344444432 12334333333 4456788899999888


Q ss_pred             Ccccc-CCCCceEEEEEeccccc--c-CCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee-cChHHHHHHHHHHHH
Q 042445          163 ITCPK-KPEGSMFVMVKLNYSLL--E-GINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA-VEPSALENGLGRMKA  237 (246)
Q Consensus       163 ~~~~~-~~~~g~~~~~~~~~~~~--~-~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~-~~~~~l~~~~~~l~~  237 (246)
                      +..+. .+....++.++.+.-..  . ...+..+ +.+.|+++||.+.+   .+..+++|++.. .++++++.+++.|++
T Consensus       283 ~~v~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~-~~~~L~~~gI~~~~---~~~~~~~ri~~~g~~~e~~~~l~~al~~  358 (361)
T cd06452         283 IKQLGEKPKNHDLMFFETPSFDEIAKKHKRRGYF-LYSELKKRGIHGIK---PGLTRYFKLSTYGLTWEQVEYVVDAFKE  358 (361)
T ss_pred             eEEECCCCCCCceEEEEcCCcchhhhhccccchh-HHHHHHHcCceEEc---CCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence            76432 23455666665541100  0 0001123 45556778998532   223678999984 388889999988876


Q ss_pred             HH
Q 042445          238 FY  239 (246)
Q Consensus       238 ~~  239 (246)
                      +.
T Consensus       359 ~~  360 (361)
T cd06452         359 IA  360 (361)
T ss_pred             Hh
Confidence            53

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=99.76  E-value=2.2e-16  Score=133.73  Aligned_cols=145  Identities=12%  Similarity=0.163  Sum_probs=107.8

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      |.+++.++++    ++++||||||.+++   +++|.++|+++|+++|+|++|....+.. +.    .++.   -++++|+
T Consensus       129 e~l~~~i~~~tklV~lesP~NPtG~v~d---l~~I~~la~~~gi~vIvDea~~~~~~~~-pl----~~Ga---Divv~S~  197 (388)
T PRK08861        129 AALDAALAKKPKLILLETPSNPLVRVVD---IAELCQKAKAVGALVAVDNTFLTPVLQK-PL----ELGA---DFVIHST  197 (388)
T ss_pred             HHHHHhcCcCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCccccccCC-Cc----ccCC---CEEEeec
Confidence            3455555543    88899999999998   6788888999999999999998655432 11    1222   2899999


Q ss_pred             ccccccC-CceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445           78 SKRGIVP-GLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD  155 (246)
Q Consensus        78 sK~~~~~-g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  155 (246)
                      +|.++++ +...|++++.+.       ++.++++..+. .+..++|.....+.+-|+.     +.-+.++..++...+.+
T Consensus       198 tK~l~G~~d~~gG~i~~~~~-------~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~T-----l~lR~~~~~~~a~~~a~  265 (388)
T PRK08861        198 TKYINGHSDVIGGVLITKTK-------EHAEELAWWGNCIGATGTPFDSYMTLRGIRT-----LGARMRVHEESAQQILA  265 (388)
T ss_pred             ceeccCCCcceeEEEEecHH-------HHHHHHHHHHhccCCCCChHHHHHHHhcCCC-----HHHHHHHHHHHHHHHHH
Confidence            9998875 478899887652       66677765544 3446789888888777775     66677777889999999


Q ss_pred             HhhcCCCCccccCC
Q 042445          156 RLKEIPCITCPKKP  169 (246)
Q Consensus       156 ~L~~~~~~~~~~~~  169 (246)
                      .|+..|.+..+..|
T Consensus       266 ~L~~~p~v~~V~yP  279 (388)
T PRK08861        266 YLQTQSLVGTIYHP  279 (388)
T ss_pred             HHHhCCCeeEEECC
Confidence            99988776544444

>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species

Probab=99.76  E-value=8.9e-18  Score=134.86  Aligned_cols=198  Identities=15%  Similarity=0.167  Sum_probs=137.4

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      ++++||||.|..     .+.++   +..+..+|-|-+|..-.|++     .....  +.-|.+.|+||.-|-+|.|+||.
T Consensus       142 lVTSPNNPDG~l-----r~~V~---~g~~~k~I~D~AYYWPhyTp-----I~~~a--D~DiMLFT~SK~TGHAGSR~GWA  206 (363)
T PF04864_consen  142 LVTSPNNPDGQL-----REAVL---NGSSGKVIHDLAYYWPHYTP-----ITAPA--DHDIMLFTLSKLTGHAGSRFGWA  206 (363)
T ss_dssp             EEESS-TTT-----------SS---TTTEEEEEEE-TT-STTTS--------S-B----SEEEEEHHHHCS-GGG-EEEE
T ss_pred             EEeCCCCCcccc-----cchhc---CCCCcceeeeeeeecccccc-----cCCCC--CCceEEEEEecccCcccccccee
Confidence            899999999986     34444   55567789999999755553     22222  23389999999999999999999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhchH---------HHHHHHHHHHHHHHHHHHHHhhcCC
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTEE---------EFFSKIIDILRETADKCCDRLKEIP  161 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~---------~~~~~~~~~~~~~~~~l~~~L~~~~  161 (246)
                      +..+.       ++..+|..+... +.++|.-+|.-++.+|....+         ....--++.+++|.+.|.+.+....
T Consensus       207 lVKD~-------~Va~kM~~y~~lnTiGvS~dsQLRa~kiLk~v~~~~~~~~~~~~~F~f~~~~M~~RW~~L~~~~~~S~  279 (363)
T PF04864_consen  207 LVKDE-------EVAKKMTKYMELNTIGVSRDSQLRALKILKVVLDGYGTEKGTEDIFHFGYSTMRERWEKLRAAVSASK  279 (363)
T ss_dssp             EES-H-------HHHHHHHHHHHHHCSS--HHHHHHHHHHHHHHHHHCCHHTTTTSHHHHHHHHHHHHHHHHHHHHCCSS
T ss_pred             eecCH-------HHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHhcccCCCCccchHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99885       888888888554 558999999999999884332         2566678889999999999997642


Q ss_pred             CCccc-cC-----------CCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC-CCeEEEEeecChHHH
Q 042445          162 CITCP-KK-----------PEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-KDWLRITFAVEPSAL  228 (246)
Q Consensus       162 ~~~~~-~~-----------~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~iRls~~~~~~~l  228 (246)
                      -+..- ..           ...+-|.|++++..       ..+.|...|++.||..+.|..|+. +.++|+|+..+++++
T Consensus       280 rFSLq~~~~~yC~ff~~~~~psPafAWlkCe~e-------ed~DC~~~l~~~~I~tr~G~~fga~~ryVRlSml~~~d~F  352 (363)
T PF04864_consen  280 RFSLQKFSPQYCNFFKRVREPSPAFAWLKCERE-------EDEDCYAVLREAKIITRSGVLFGADSRYVRLSMLKRDDDF  352 (363)
T ss_dssp             SEEE---SCEEETTTTCEEE---SEEEEEESSC-------GGSSHHHHHHCTTEEEEEGGGGTS-TTEEEEESSS-HHHH
T ss_pred             ceecCcCCchhccccccccCCCCCeEEEecCCc-------ccccHHHHHHhCCcccCCCCccCCCCCeEEEeccCCHHHH
Confidence            22210 11           12578999998754       335678899999999999999998 899999999999999


Q ss_pred             HHHHHHHHHH
Q 042445          229 ENGLGRMKAF  238 (246)
Q Consensus       229 ~~~~~~l~~~  238 (246)
                      +..+++|...
T Consensus       353 d~l~~rL~~l  362 (363)
T PF04864_consen  353 DQLLERLSKL  362 (363)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHHhh
Confidence            9999998753

Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=99.75  E-value=1.1e-16  Score=136.22  Aligned_cols=218  Identities=15%  Similarity=0.080  Sum_probs=140.6

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.++++    ++++++||||.+++   +++|.++|+++|+++++|++++...    ....+...+   --+++.|.
T Consensus       127 ~~l~~~i~~~~~lv~i~~~~n~tG~~~~---~~~I~~l~~~~g~~vivD~~~~~g~----~~~~~~~~~---~D~~~~s~  196 (379)
T TIGR03402       127 EELRAAITDDTALVSVMWANNETGTIFP---IEEIGEIAKERGALFHTDAVQAVGK----IPIDLKEMN---IDMLSLSG  196 (379)
T ss_pred             HHHHHhcCCCcEEEEEEcccCCeeeccc---HHHHHHHHHHcCCEEEEECcccccc----cccCcccCC---CCEEEEcH
Confidence            4455666544    77889999999999   5678999999999999999997422    111122221   22667778


Q ss_pred             ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRL  157 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L  157 (246)
                      .|.++.+|  +|+++..+.....  +.+............+.+.....++.++++. ...++++..++.++.++.+.+.|
T Consensus       197 ~K~~gp~G--~g~l~v~~~~~~~--p~~~g~~~~~~~~~gt~~~~~~~~l~~al~~-~~~~~~~~~~~~~~l~~~l~~~l  271 (379)
T TIGR03402       197 HKLHGPKG--VGALYIRKGTRFR--PLLRGGHQERGRRAGTENVPGIVGLGKAAEL-ATEHLEEENTRVRALRDRLEAGL  271 (379)
T ss_pred             HHcCCCCc--eEEEEECCCCCCC--CcccCCccCCCcCCCCccHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHH
Confidence            89776666  7888776631100  0010000000011224566666666666664 23467777788888999999999


Q ss_pred             hc-CCCCccccCCC----CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC-------------------
Q 042445          158 KE-IPCITCPKKPE----GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-------------------  213 (246)
Q Consensus       158 ~~-~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-------------------  213 (246)
                      ++ ++++.....+.    +...++  ++..      +. +.+...|.++||.+.+|..|..                   
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~------~~-~~~~~~l~~~gI~v~~g~~c~~~~~~~~~~~~~lg~~~~~~  342 (379)
T TIGR03402       272 LARIPDARLNGDPTKRLPNTVNIS--FEYI------EG-EAILLLLDMEGICASSGSACTSGSLEPSHVLRAMGVPHTAA  342 (379)
T ss_pred             HhhCCCEEEeCCCccCCCCEEEEE--ecCC------CH-HHHHHhhccCCEEEEchhhcCCCCCCcCHHHHHcCCChhhc
Confidence            85 77766432221    123333  3322      23 3445567889999999887643                   


Q ss_pred             CCeEEEEeec--ChHHHHHHHHHHHHHHHHHh
Q 042445          214 KDWLRITFAV--EPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       214 ~~~iRls~~~--~~~~l~~~~~~l~~~~~~~~  243 (246)
                      .+.+|+|++.  ++++++++++.|++.++++.
T Consensus       343 ~~~vR~S~~~~~t~~di~~~~~~l~~~~~~~~  374 (379)
T TIGR03402       343 HGSIRFSLSRYNTEEDIDYVLEVLPPIIARLR  374 (379)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            2689999995  89999999999999887654

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=99.75  E-value=1.7e-16  Score=137.12  Aligned_cols=213  Identities=15%  Similarity=0.132  Sum_probs=141.7

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      +-..|+|+....+|++++++|.++|++||+++|.||++.++...+..+ ....++....+++   +||.++. |+++|++
T Consensus       212 ~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~-a~~~~gv~PDiv~---~gK~l~~-G~Pigav  286 (442)
T TIGR00709       212 LEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMF-AFEHAGIEPDFVV---MSKAVGG-GLPLAVL  286 (442)
T ss_pred             EccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchh-HHHHcCCCCcEEE---EcccccC-CcccEEE
Confidence            445666676667899999999999999999999999999998776433 3333333323333   7999876 8999999


Q ss_pred             EeeCCCCCcchhhHHHHHHH-HhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc----CCCCccc
Q 042445           92 VTSDPNGILQDSGIVDSIKI-FLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKE----IPCITCP  166 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~  166 (246)
                      ++++        + ++.+.. ....+++.||++++++.+.|+...+.   ...+..+++.+.+.+.|++    .|.+.. 
T Consensus       287 ~~~~--------~-~~~~~~~~~~~T~~gnpla~aaa~a~L~~i~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~v~~-  353 (442)
T TIGR00709       287 LIAP--------E-FDAWQPAGHTGTFRGNQLAMVTGTEALNYWKDD---NLAQNAQERGERITSFLDDMIKEHPCIGN-  353 (442)
T ss_pred             EEch--------H-HhccCCCcCCCCCCcCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHhCCCeee-
Confidence            9987        5 343322 23345689999999999999753322   2233444455555555543    443321 


Q ss_pred             cCCCCceEEEEEeccccc-cC----CC---ChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHH
Q 042445          167 KKPEGSMFVMVKLNYSLL-EG----IN---SDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMK  236 (246)
Q Consensus       167 ~~~~~g~~~~~~~~~~~~-~~----~~---~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~  236 (246)
                      +. .-|.++.+++..... ++    ..   +....+...+.++||++.+....  .+.+|+....  ++++++++++++.
T Consensus       354 vr-G~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~--~~~l~~~Ppl~it~~ei~~~~~~l~  430 (442)
T TIGR00709       354 VR-GRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACFENGLLLETGGRE--GEVFRLLCPITIDQEECEEGISRFK  430 (442)
T ss_pred             ee-ccceEEEEEEccCcccccccccCCcchHHHHHHHHHHHHCCeEEeecCCC--CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            22 346677777743210 00    00   11344556677899998764321  5789998874  9999999999999


Q ss_pred             HHHHHHhhc
Q 042445          237 AFYDRHAEK  245 (246)
Q Consensus       237 ~~~~~~~~~  245 (246)
                      +++++..++
T Consensus       431 ~~l~~~~~~  439 (442)
T TIGR00709       431 QAVEEALAE  439 (442)
T ss_pred             HHHHHHHHH
Confidence            999876543

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=99.75  E-value=2.4e-16  Score=133.78  Aligned_cols=144  Identities=15%  Similarity=0.230  Sum_probs=100.8

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.+.++    ++.+|+||+|.+.+   +++|.++|+++|+++|+|++|..+....    ++ ..+   .-+++.|+
T Consensus       130 ~~l~~~i~~~tklV~le~p~np~g~~~d---l~~I~~la~~~gi~livD~a~~~~~~~~----pl-~~g---~Divv~S~  198 (380)
T TIGR01325       130 NAWEAAVKPNTKLVFVETPSNPLGELVD---IAALAELAHAIGALLVVDNVFATPVLQQ----PL-KLG---ADVVVYSA  198 (380)
T ss_pred             HHHHHhcCCCceEEEEECCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCcccccCC----ch-hhC---CCEEEeec
Confidence            3455555443    88899999999976   8899999999999999999998654321    11 122   23788899


Q ss_pred             ccccccCCceE-EEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445           78 SKRGIVPGLRL-GWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD  155 (246)
Q Consensus        78 sK~~~~~g~r~-G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  155 (246)
                      +|.++++|.++ |++++++        ++++.++.... .+..+++....++.+.++     .+..+.++..++++.+.+
T Consensus       199 sK~l~g~g~~~gG~vv~~~--------~~~~~l~~~~~~~g~~~~p~~a~~~l~~l~-----tl~~r~~~~~~~a~~la~  265 (380)
T TIGR01325       199 TKHIDGQGRVMGGVIAGSE--------ELMAEVAVYLRHTGPAMSPFNAWVLLKGLE-----TLSLRMQKQFDSALAIAE  265 (380)
T ss_pred             cceecCCCCeEEEEEEeCH--------HHHHHHHHHHHhhCCCCCHHHHHHHHhccC-----cHHHHHHHHHHHHHHHHH
Confidence            99999999887 6666666        88887776533 333445555444433333     355667778889999999


Q ss_pred             HhhcCCCCccccCC
Q 042445          156 RLKEIPCITCPKKP  169 (246)
Q Consensus       156 ~L~~~~~~~~~~~~  169 (246)
                      .|+++|++..+..|
T Consensus       266 ~L~~~p~v~~V~yp  279 (380)
T TIGR01325       266 WLQAQPQVQAVYYP  279 (380)
T ss_pred             HHHcCCCccEEECC
Confidence            99988776543333

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=99.75  E-value=3.8e-16  Score=132.92  Aligned_cols=144  Identities=16%  Similarity=0.175  Sum_probs=101.3

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.+.++    ++++|+||+|.+.+   +++|.++|+++|+++|+|++|.......    ++. .+   .-+++.|+
T Consensus       135 e~l~~~i~~~tklV~le~p~Np~G~v~d---l~~I~~la~~~gi~livD~a~a~~~~~~----~~~-~g---~Divv~S~  203 (391)
T TIGR01328       135 EEVKAHIKDNTKIVYFETPANPTMKLID---MERVCRDAHSQGVKVIVDNTFATPMLTN----PVA-LG---VDVVVHSA  203 (391)
T ss_pred             HHHHHhhccCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCchhccCC----chh-cC---CCEEEccc
Confidence            4455666544    78899999999987   7888999999999999999998654321    111 11   22888999


Q ss_pred             ccccccCCceE-EEEEeeCCCCCcchhhHHHHHHHHh-h-h-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 042445           78 SKRGIVPGLRL-GWLVTSDPNGILQDSGIVDSIKIFL-N-I-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKC  153 (246)
Q Consensus        78 sK~~~~~g~r~-G~i~~~~~~~~~~~~~~~~~l~~~~-~-~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l  153 (246)
                      ||.++++|.++ |++++++        ++++.++... . . +..+++...+.+.+.|+.     +..+.++.+++.+.+
T Consensus       204 sK~lgg~g~~~gG~v~~~~--------~li~~l~~~~~~~~~g~~l~~~~a~l~l~~L~t-----l~~r~~~~~~na~~l  270 (391)
T TIGR01328       204 TKYIGGHGDVVAGLICGKA--------ELLQQIRMVGIKDMTGSVISPFDAWLILRGLKT-----LNIRMKRHSENAMKV  270 (391)
T ss_pred             cccccCCCCceEEEEEcCH--------HHHHHHHHHHHHhCCCCCCCcHHHHHHHhCcCc-----HHHHHHHHHHHHHHH
Confidence            99999999875 5666655        8888887542 2 2 235566666665555542     455566778889999


Q ss_pred             HHHhhcCCCCccccCC
Q 042445          154 CDRLKEIPCITCPKKP  169 (246)
Q Consensus       154 ~~~L~~~~~~~~~~~~  169 (246)
                      .+.|+++|++..+..|
T Consensus       271 a~~L~~~p~v~~v~yp  286 (391)
T TIGR01328       271 AEYLKSHPAVEKVYYP  286 (391)
T ss_pred             HHHHHhCCCccEEECC
Confidence            9999888776544333

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>PRK07503 methionine gamma-lyase; Provisional

Probab=99.74  E-value=3.4e-16  Score=133.68  Aligned_cols=140  Identities=16%  Similarity=0.172  Sum_probs=100.9

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.++++    ++.+|+||||.+.+   +++|.++|+++|+++|+|++|+..... .   ++. ++   ..++++|+
T Consensus       141 ~~l~~~i~~~tklV~le~p~NPtG~~~d---i~~I~~la~~~gi~lIvD~a~a~~~~~-~---~l~-~g---~Di~v~S~  209 (403)
T PRK07503        141 AALKAAISDKTRMVYFETPANPNMRLVD---IAAVAEIAHGAGAKVVVDNTYCTPYLQ-R---PLE-LG---ADLVVHSA  209 (403)
T ss_pred             HHHHHhcCccCcEEEEeCCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCcccccC-C---chh-hC---CCEEEccc
Confidence            4556666544    77899999999987   889999999999999999999865432 1   111 22   23899999


Q ss_pred             ccccccCC-ceEEEEEeeCCCCCcchhhHHHHHHHH--hh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 042445           78 SKRGIVPG-LRLGWLVTSDPNGILQDSGIVDSIKIF--LN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKC  153 (246)
Q Consensus        78 sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~l~~~--~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l  153 (246)
                      ||.++++| .+.|+++.++        +++++++..  .. .+..++++.+..+.+.|+     .+..+.++..++...+
T Consensus       210 tK~l~g~gd~~gG~v~~~~--------~l~~~l~~~~~~~~~g~~~s~~~a~l~l~~L~-----tl~~r~~~~~~na~~~  276 (403)
T PRK07503        210 TKYLGGHGDITAGLVVGGK--------ALADRIRLEGLKDMTGAVMSPFDAFLLMRGLK-----TLALRMDRHCASAQAV  276 (403)
T ss_pred             cccccCCCceeEEEEEcCH--------HHHHHHHhhhHHhCcCCCCCHHHHHHHHcCcc-----hHHHHHHHHHHHHHHH
Confidence            99999876 7888888666        888888643  32 244677777776665555     3555555566888888


Q ss_pred             HHHhhcCCCCcc
Q 042445          154 CDRLKEIPCITC  165 (246)
Q Consensus       154 ~~~L~~~~~~~~  165 (246)
                      .+.|+++|.+..
T Consensus       277 a~~L~~~p~v~~  288 (403)
T PRK07503        277 AEWLARHPAVEL  288 (403)
T ss_pred             HHHHHhCCCccE
Confidence            899988776553

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=99.74  E-value=3.1e-16  Score=133.37  Aligned_cols=145  Identities=18%  Similarity=0.179  Sum_probs=101.6

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      |.+++.++++    ++++|+||||.+.+   +++|.++|+++|+++|+|++|+......    ++. .+   .-+++.|+
T Consensus       137 e~l~~~i~~~tklV~ie~p~NPtg~~~d---l~~I~~la~~~gi~lIvD~a~a~~~~~~----p~~-~g---aDivv~S~  205 (388)
T PRK07811        137 DAVRAAITPRTKLIWVETPTNPLLSITD---IAALAELAHDAGAKVVVDNTFASPYLQQ----PLA-LG---ADVVVHST  205 (388)
T ss_pred             HHHHHhcCcCCeEEEEECCCCCcceecC---HHHHHHHHHHcCCEEEEECCCCccccCC----chh-hC---CcEEEecC
Confidence            4455555544    77899999998754   8899999999999999999998654321    111 12   22899999


Q ss_pred             ccccccCC-ceEEEEEeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445           78 SKRGIVPG-LRLGWLVTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD  155 (246)
Q Consensus        78 sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  155 (246)
                      +|.++++| .+.||+++++.       ++.+.++..... +...++.....+.+.|+     .+..+.++.+++.+.+.+
T Consensus       206 sK~l~g~~~~~gG~vv~~~~-------~l~~~~~~~~~~~g~~~s~~~a~l~~~~L~-----tl~~R~~~~~~na~~la~  273 (388)
T PRK07811        206 TKYIGGHSDVVGGALVTNDE-------ELDEAFAFLQNGAGAVPGPFDAYLTLRGLK-----TLAVRMDRHSENAEAVAE  273 (388)
T ss_pred             ceeecCCCCcEEEEEEECCH-------HHHHHHHHHHHhcCCCCCHHHHHHHHhccC-----cHHHHHHHHHHHHHHHHH
Confidence            99998865 67899998763       666666655443 32455665555544444     266666667889999999


Q ss_pred             HhhcCCCCccccCC
Q 042445          156 RLKEIPCITCPKKP  169 (246)
Q Consensus       156 ~L~~~~~~~~~~~~  169 (246)
                      .|+++|++..+..|
T Consensus       274 ~L~~~p~v~~V~yP  287 (388)
T PRK07811        274 FLAGHPEVSTVLYP  287 (388)
T ss_pred             HHHhCCCeeEEECC
Confidence            99988876544433

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=99.74  E-value=5.3e-16  Score=132.19  Aligned_cols=215  Identities=11%  Similarity=0.061  Sum_probs=138.2

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCC--CCCccccccCC-cccEEEEcccccccccCCceE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGN--TPFVSMGVFGS-IVPLLTLGSISKRGIVPGLRL   88 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~--~~~~~~~~~~~-~~~~i~~~s~sK~~~~~g~r~   88 (246)
                      ++.++.||+|.+.+   ++++.++|++||+++|+||+|+....+.  .+......+.+ .+..+++.|+||.++..|   
T Consensus       143 i~E~v~~~~G~i~~---l~~i~~l~~~~g~~livDe~~~~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~g~~g---  216 (392)
T PLN03227        143 VVEGLYKNTGTLAP---LKELVALKEEFHYRLILDESFSFGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAFGSVG---  216 (392)
T ss_pred             EEcCCcCCCCcccC---HHHHHHHHHHcCCEEEEECcccccccCCCCCcHHHHcCCCCCCCceEEEeechhhhhccC---
Confidence            66778899999999   7899999999999999999998333322  22211111222 233588888999976555   


Q ss_pred             EEEEeeCCCCCcchhhHHHHHHHH-hhhcCC--CCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCcc
Q 042445           89 GWLVTSDPNGILQDSGIVDSIKIF-LNISSD--PATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITC  165 (246)
Q Consensus        89 G~i~~~~~~~~~~~~~~~~~l~~~-~~~~~~--~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~  165 (246)
                      |++++++        ++++.++.. ...+++  .+|..+.++...+....  ..++..+.++++.+++.+.|++. ++..
T Consensus       217 g~v~~~~--------~~~~~~~~~~~~~~~~~~~~p~~~~aa~~al~~~~--~~~~~~~~l~~~~~~l~~~L~~~-~~~~  285 (392)
T PLN03227        217 GMTVGSE--------EVVDHQRLSGSGYCFSASAPPFLAKADATATAGEL--AGPQLLNRLHDSIANLYSTLTNS-SHPY  285 (392)
T ss_pred             cEEecCH--------HHHHHHHHhCcCccccCCCCHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHhc-CCcc
Confidence            8988887        888777644 222223  34666666665664211  13456777888888999988752 2111


Q ss_pred             cc---------CCCCceEEEEEeccccccC-CCC--hHHHHHHHHHhcCeEEecCC-------CcCCCCeEEEEeec--C
Q 042445          166 PK---------KPEGSMFVMVKLNYSLLEG-INS--DMEFALKLAKEESVIVLPGI-------TVGLKDWLRITFAV--E  224 (246)
Q Consensus       166 ~~---------~~~~g~~~~~~~~~~~~~~-~~~--~~~~~~~ll~~~gi~v~pg~-------~f~~~~~iRls~~~--~  224 (246)
                      +.         ....+..+.+.+.+..... ..+  ....+.+.+.++|+.+.+..       .+-++..+|+++..  +
T Consensus       286 ~~~~rg~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~~~~~~~P~~~iR~~~~~~~t  365 (392)
T PLN03227        286 ALKLRNRLVITSDPISPIIYLRLSDQEATRRTDETLILDQIAHHSLSEGVAVVSTGGHVKKFLQLVPPPCLRVVANASHT  365 (392)
T ss_pred             ccccccccccCCCCCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHHHCCCEEEecccccCCcCCCCCCceEEEEecCCCC
Confidence            11         1123556666664321000 000  11355667778999987522       12226789999995  9


Q ss_pred             hHHHHHHHHHHHHHHHHHh
Q 042445          225 PSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       225 ~~~l~~~~~~l~~~~~~~~  243 (246)
                      +++++++++.|++++++..
T Consensus       366 ~eei~~~~~~l~~~~~~~~  384 (392)
T PLN03227        366 REDIDKLLTVLGEAVEAIL  384 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999987753

>PRK07269 cystathionine gamma-synthase; Reviewed

Probab=99.74  E-value=8e-17  Score=135.64  Aligned_cols=212  Identities=18%  Similarity=0.202  Sum_probs=135.8

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.++++    ++++|+||||.+.+   +++|+++|+++|+++|+|++|....+.    .++. .+   --+++.|+
T Consensus       127 ~~l~~~i~~~TklV~lesP~NPtg~~~d---i~~I~~la~~~gi~vvvD~t~~~~~~~----~pl~-~g---aDivv~S~  195 (364)
T PRK07269        127 EELIAAIEEDTDIVYIETPTNPLMVEFD---IEKVAKLAHAKGAKVIVDNTFYSPIYQ----RPIE-LG---ADIVLHSA  195 (364)
T ss_pred             HHHHHhcCcCceEEEEECCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCcccccC----Cchh-hC---CcEEEecC
Confidence            3455666554    78999999998874   999999999999999999998643322    1221 12   22889999


Q ss_pred             ccccccCC-ceEEEEEeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445           78 SKRGIVPG-LRLGWLVTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD  155 (246)
Q Consensus        78 sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  155 (246)
                      +|.++++| .-.|++++++.       ++.++++..+.. +..++++..+.+.+.|+.     +..+.++.++++..+.+
T Consensus       196 tK~l~g~~d~~gG~v~~~~~-------~l~~~~~~~~~~~G~~~s~~~a~l~~~~L~t-----L~~r~~~~~~na~~~a~  263 (364)
T PRK07269        196 TKYLSGHNDVLAGVVVTNDL-------ELYEKLFYNLNTTGAVLSPFDSYLLMRGLKT-----LSLRMERSTANAQEVVA  263 (364)
T ss_pred             ceeccCCCcccceEEEeCcH-------HHHHHHHHHHHHhCCCCCHHHHHHHHcCCCc-----HHHHHHHHHHHHHHHHH
Confidence            99988755 34578777553       777777755433 446788888877777774     77777778999999999


Q ss_pred             HhhcCCCCcccc-CCCCceEEEEEecccc-cc---CCCChHHHHHHHHHhcCeEEecCCCcCC-------------CCeE
Q 042445          156 RLKEIPCITCPK-KPEGSMFVMVKLNYSL-LE---GINSDMEFALKLAKEESVIVLPGITVGL-------------KDWL  217 (246)
Q Consensus       156 ~L~~~~~~~~~~-~~~~g~~~~~~~~~~~-~~---~~~~~~~~~~~ll~~~gi~v~pg~~f~~-------------~~~i  217 (246)
                      .|++.|.+..+. ++.||++.+. +.... ..   +..+....+..+...+++.+.|+..+..             ++.|
T Consensus       264 ~L~~~p~v~~v~ypg~gg~~sf~-~~~~~~~~~f~~~l~~~~~~~slG~~~sl~~~p~~~~~~~~~~~~r~~~Gi~~~li  342 (364)
T PRK07269        264 FLKKSPAVKEVLYTGKGGMISFK-VADETRIPHILNSLKVFTFAESLGGVESLITYPTTQTHADIPAEVRHSYGLTDDLL  342 (364)
T ss_pred             HHHhCCCccEEeCCCcCcEEEEE-ECCHHHHHHHHHhCCcceEccCCCCcCeEeeCCcccccccCCHHHHHhcCCCCCeE
Confidence            999988776555 4556655554 43210 00   0000111122222334555556433211             5789


Q ss_pred             EEEeecChHHHHHHHHHHHHHH
Q 042445          218 RITFAVEPSALENGLGRMKAFY  239 (246)
Q Consensus       218 Rls~~~~~~~l~~~~~~l~~~~  239 (246)
                      |+|++.++  .+..++-|.+++
T Consensus       343 RlsvGlE~--~~dli~dl~~al  362 (364)
T PRK07269        343 RLSIGIED--ARDLIADLKQAL  362 (364)
T ss_pred             EEEeccCC--HHHHHHHHHHHh
Confidence            99999742  334455555554

>PLN02409 serine--glyoxylate aminotransaminase

Probab=99.74  E-value=3.9e-16  Score=133.57  Aligned_cols=208  Identities=13%  Similarity=0.032  Sum_probs=145.3

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      ++++++||||.+++.+++.++++ |+++|+++|+|++++...    ....+..+   +.-+++.|.+|.+++|. ++||+
T Consensus       142 ~~~~~~~~tG~~~~~~~i~~l~~-~~~~g~~~vvD~v~s~g~----~~id~~~~---~~D~~~~s~~K~l~~P~-G~G~l  212 (401)
T PLN02409        142 CVVHNETSTGVTNDLAGVRKLLD-CAQHPALLLVDGVSSIGA----LDFRMDEW---GVDVALTGSQKALSLPT-GLGIV  212 (401)
T ss_pred             EEEeecccccccCCHHHHHHHHh-hhccCcEEEEEcccccCC----cccccccc---CccEEEEcCccccCcCC-Cccee
Confidence            77888899999999666666655 999999999999987321    11111112   22366677799986643 69999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhh------------------h-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLN------------------I-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADK  152 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~------------------~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~  152 (246)
                      +.++        +.++++.....                  . .++++...+.++..+++...+..+++.+++.++.++.
T Consensus       213 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~G~e~i~~~~~~l~~~  284 (401)
T PLN02409        213 CASP--------KALEASKTAKSPRVFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENVIARHARLGEA  284 (401)
T ss_pred             EECH--------HHHHHHhcCCCCCeecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            9988        77777653210                  0 1144555677777777743455688888999999999


Q ss_pred             HHHHhhcCCCCccccCCC---CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHH
Q 042445          153 CCDRLKEIPCITCPKKPE---GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSA  227 (246)
Q Consensus       153 l~~~L~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~  227 (246)
                      +.+.|+++ |+..+....   .+...++.++...     +..++...++.++||.+.+|........+|++...  +.++
T Consensus       285 l~~~L~~~-g~~~~~~~~~~~s~~v~~~~~p~~~-----~~~~l~~~l~~~~~i~i~~G~~~~~~~~~Rig~~g~~~~~~  358 (401)
T PLN02409        285 TRLAVEAW-GLKLCTKKPEWRSDTVTAVVVPEGI-----DSAEIVKNAWKKYNLSLGLGLNKVAGKVFRIGHLGNVNELQ  358 (401)
T ss_pred             HHHHHHHc-CCeeccCChhhcccceEEEeCCCCC-----CHHHHHHHHHHhCCEEEEcCCCcccCCEEEEcCCCCCCHHH
Confidence            99999887 666433211   2233455555332     34566667778999999998865347899999874  8899


Q ss_pred             HHHHHHHHHHHHHHH
Q 042445          228 LENGLGRMKAFYDRH  242 (246)
Q Consensus       228 l~~~~~~l~~~~~~~  242 (246)
                      +...+..|++++.+.
T Consensus       359 ~~~~~~~~~~~l~~~  373 (401)
T PLN02409        359 LLGALAGVEMVLKDV  373 (401)
T ss_pred             HHHHHHHHHHHHHHc
Confidence            999999999998764

>PLN02955 8-amino-7-oxononanoate synthase

Probab=99.74  E-value=3.2e-16  Score=134.00  Aligned_cols=194  Identities=13%  Similarity=0.073  Sum_probs=132.9

Q ss_pred             cCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccC-CcccEEEEcccccccccCCceEEEEEeeC
Q 042445           17 VFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFG-SIVPLLTLGSISKRGIVPGLRLGWLVTSD   95 (246)
Q Consensus        17 ~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~~~i~~~s~sK~~~~~g~r~G~i~~~~   95 (246)
                      -++.|.+.+   +++|.++|++||+++|+||+|+.+.++..+-.....++ ..+..|+++||||++|+.|   ||+++++
T Consensus       259 ~SmdGdiap---L~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~~di~ii~~TLsKA~G~~G---Gfi~gs~  332 (476)
T PLN02955        259 FSMDGDFAP---MEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFNCEADVDLCVGTLSKAAGCHG---GFIACSK  332 (476)
T ss_pred             CCCCCCcCC---HHHHHHHHHHcCcEEEEcccccCceecCCCCcHHHHhCCCCCCcEEEEeCccchhccC---ceeecHH
Confidence            468888888   88889999999999999999998887754333333332 2356799999999998888   9999998


Q ss_pred             CCCCcchhhHHHHHHHHh-hh-cCCC-CchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCc
Q 042445           96 PNGILQDSGIVDSIKIFL-NI-SSDP-ATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGS  172 (246)
Q Consensus        96 ~~~~~~~~~~~~~l~~~~-~~-~~~~-~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g  172 (246)
                              ++++.++... .+ +++. ++....++.+++...  ......++.++++.+++.+.   . |+..   +  .
T Consensus       333 --------~~~~~l~~~~~~~ifStalpp~~aaa~laal~l~--~~~~~~r~~L~~n~~~fr~~---~-G~~~---~--s  393 (476)
T PLN02955        333 --------KWKQLIQSRGRSFIFSTAIPVPMAAAAYAAVVVA--RKEKWRRKAIWERVKEFKAL---S-GVDI---S--S  393 (476)
T ss_pred             --------HHHHHHHHhCCCCeecccccHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHh---c-CCCC---C--C
Confidence                    8888888653 22 2233 333333444444421  11234667788888887763   2 4431   1  3


Q ss_pred             eEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC---CCeEEEEeec--ChHHHHHHHHHHHHHHHH
Q 042445          173 MFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFAV--EPSALENGLGRMKAFYDR  241 (246)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~iRls~~~--~~~~l~~~~~~l~~~~~~  241 (246)
                      ..+.+.+....      ....+.+.|.++||.+.+-.+...   ...+|++++.  ++++++.+++.|.+..+.
T Consensus       394 PI~pI~ig~~~------~a~~~~~~L~~~Gi~v~~i~yPtVP~g~~rLRi~lsA~Ht~edId~lv~~L~~~~~~  461 (476)
T PLN02955        394 PIISLVVGNQE------KALKASRYLLKSGFHVMAIRPPTVPPNSCRLRVTLSAAHTTEDVKKLITALSSCLDF  461 (476)
T ss_pred             CEEEEEeCCHH------HHHHHHHHHHHCCCEEEEECCCCCCCCCceEEEeeCCCCCHHHHHHHHHHHHHHHhh
Confidence            33334354432      444557778899999987665543   4579999985  899999999999887654

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=99.74  E-value=2.1e-16  Score=136.01  Aligned_cols=200  Identities=16%  Similarity=0.114  Sum_probs=131.9

Q ss_pred             Ccc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCC
Q 042445           20 VGS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNG   98 (246)
Q Consensus        20 tG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~   98 (246)
                      .|. +++.+++++|.++|++||+++|+||+++++...|..+ .....+-...   +.++||.++..|+++|++++++   
T Consensus       211 ~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~-~~~~~~v~PD---i~t~~K~l~~~G~pigav~~~~---  283 (425)
T PRK09264        211 GGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFF-SFERAGITPD---IVTLSKSISGYGLPMALVLIKP---  283 (425)
T ss_pred             CCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccHHH-HHhhcCCCCC---EEEeccccCCCccceEEEEEch---
Confidence            454 5788999999999999999999999999876665432 1112221112   4467899877799999999997   


Q ss_pred             CcchhhHHHHHHH-HhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc----CCCCccccCCCCce
Q 042445           99 ILQDSGIVDSIKI-FLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKE----IPCITCPKKPEGSM  173 (246)
Q Consensus        99 ~~~~~~~~~~l~~-~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~g~  173 (246)
                           ++ ..+.. ....+++.|+++..++.+.+.....  -....+..+++.+.+.+.|++    .|.+. ......|+
T Consensus       284 -----~i-~~~~~~~~~~T~~gnp~~~aaa~a~l~~~~~--~~~l~~~~~~~g~~l~~~l~~l~~~~~~~~-~~vrg~Gl  354 (425)
T PRK09264        284 -----EL-DVWKPGEHNGTFRGNNLAFVTATAALEEYWS--DDAFEKEVKAKGELVRERLEEIAAKYPGLG-AEVRGRGM  354 (425)
T ss_pred             -----hh-hccCCCccCCCCCCCHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHhCCCce-ecceeccc
Confidence                 65 33322 1223447788888877677742111  112333444444444444433    43321 12345688


Q ss_pred             EEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHHHHHHh
Q 042445          174 FVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~~~~~  243 (246)
                      ++++.++...      ....+...+.++||.+.++..+  .+.||++..  .+++++++++++|.+++++..
T Consensus       355 ~~~i~l~~~~------~~~~l~~~~~~~Gv~~~~~~~~--~~~lr~~p~l~~t~~ei~~~~~~l~~~l~~~~  418 (425)
T PRK09264        355 MQGIDFGDGE------LAGKIAAEAFENGLIIETSGPE--DEVVKLLPPLTIDEEELEEGLDILEEAVAEVL  418 (425)
T ss_pred             EEEEEecChH------HHHHHHHHHHHCCCEEeccCCC--CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            8898886432      3445566777899999885433  478888877  489999999999999987754

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=99.73  E-value=4.2e-16  Score=132.13  Aligned_cols=213  Identities=14%  Similarity=0.053  Sum_probs=138.8

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCC-CCCccccccCCcccEEEEcc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGN-TPFVSMGVFGSIVPLLTLGS   76 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~~~~~i~~~s   76 (246)
                      |.+++.++++    +++.++||||.+.+   +++|.++|+++|+++++|++|+.+..+- ...... .+....-..+..|
T Consensus       142 ~~l~~~i~~~~~~vi~~~~~~~tG~~~~---l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~-~~~~~~vd~~~~s  217 (371)
T PRK13520        142 KAVEDLIDDNTIGIVGIAGTTELGQVDP---IPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNF-DFSLPGVDSITID  217 (371)
T ss_pred             HHHHHHHhhCCEEEEEEcCCcCCcccCC---HHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCc-cccCCCCceEEEC
Confidence            4566666543    55677899999987   8888999999999999999998765321 010000 1111111233446


Q ss_pred             cccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhc---------CCCCchHHHHHHHHHhhchHHHHHHHHHHHH
Q 042445           77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNIS---------SDPATFIQGAVPQILEKTEEEFFSKIIDILR  147 (246)
Q Consensus        77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~  147 (246)
                      ..|. ++++.++|+++..+.       ++++.+....+..         .+.+.....++..++..-.+...++.++...
T Consensus       218 ~~K~-~~a~~~~G~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~al~~l~~~g~~~~~~~~~  289 (371)
T PRK13520        218 PHKM-GLAPIPAGGILFRDE-------SYLDALAVDTPYLTSKKQATLTGTRSGAGVAATYAVMKYLGREGYRKVVERCM  289 (371)
T ss_pred             Cccc-cCccCCceEEEEcCH-------HHHHhhcccCccccCCCCcceEeeccChHHHHHHHHHhhhcHhHHHHHHHHHH
Confidence            6785 777889999887652       5666654221111         0123455666666666433455677888889


Q ss_pred             HHHHHHHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--Ch
Q 042445          148 ETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EP  225 (246)
Q Consensus       148 ~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~  225 (246)
                      ++++.+.+.|+++ |+..+..|. ..++.+.++.        ..+ +.+.|.++||.+.++.   ..+++|+|+..  ++
T Consensus       290 ~~~~~l~~~L~~~-g~~~~~~~~-~~~v~~~~~~--------~~~-v~~~L~~~gi~v~~~~---~~~~iRis~~~~~t~  355 (371)
T PRK13520        290 ENTRWLAEELKER-GFEPVIEPV-LNIVAFDDPN--------PDE-VREKLRERGWRVSVTR---CPEALRIVCMPHVTR  355 (371)
T ss_pred             HHHHHHHHHHHhC-CCEEecCCC-ceEEEEecCC--------HHH-HHHHHHHCCceeccCC---CCCEEEEEEECCCCH
Confidence            9999999999887 665233444 3455555541        334 4555667899987743   25789999873  88


Q ss_pred             HHHHHHHHHHHHHHH
Q 042445          226 SALENGLGRMKAFYD  240 (246)
Q Consensus       226 ~~l~~~~~~l~~~~~  240 (246)
                      ++++.+++.|++.++
T Consensus       356 edi~~~~~~l~~~~~  370 (371)
T PRK13520        356 EHIENFLEDLKEVKK  370 (371)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999988764

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=99.73  E-value=7.7e-16  Score=130.49  Aligned_cols=201  Identities=12%  Similarity=0.021  Sum_probs=127.7

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      ++++++||+|.+.+   +++|.++|+++|+++++||+|+...++.........++..+..+.+.||||.+|..|   +.+
T Consensus       148 ~v~~v~s~~G~i~p---l~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~~~~tlsK~~g~~G---~~v  221 (370)
T PRK05937        148 FVCSVYSFKGTLAP---LEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLVTYSKALGSMG---AAL  221 (370)
T ss_pred             EEecCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCcEEEEechhhhhcCc---eEE
Confidence            56789999999998   888999999999999999999965544322111111221222367899999998888   445


Q ss_pred             EeeCCCCCcchhhHHHHHHHH-hh--hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccC
Q 042445           92 VTSDPNGILQDSGIVDSIKIF-LN--ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKK  168 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~-~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~  168 (246)
                      +..+        +....+... ..  +..+.++....++..+++.. .+..+..++++++.++.+.+.|+...       
T Consensus       222 l~~~--------~~~~~~~~~~~~~~~s~~~~~~~~~a~~aal~~l-~~~~~~~~~~l~~l~~~l~~~l~~~~-------  285 (370)
T PRK05937        222 LSSS--------EVKQDLMLNSPPLRYSTGLPPHLLISIQVAYDFL-SQEGELARKQLFRLKEYFAQKFSSAA-------  285 (370)
T ss_pred             EcCH--------HHHHHHHHhCCCCeecCCCCHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHhcCCCC-------
Confidence            5555        655555432 11  22245666666555555421 11123445666777777777665421       


Q ss_pred             CCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHHhh
Q 042445          169 PEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDRHAE  244 (246)
Q Consensus       169 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~~~  244 (246)
                      +  +....+.++..       ..+.+.+.|.++||.+.... +...+++|+|++.  ++++++.+++.|.+.+++..+
T Consensus       286 ~--~~~~~i~~~~~-------~~~~~~~~L~~~gi~v~~~~-~~~~~~iRis~~~~~t~edid~l~~~L~~~~~~~~~  353 (370)
T PRK05937        286 P--GCVQPIFLPGI-------SEQELYSKLVETGIRVGVVC-FPTGPFLRVNLHAFNTEDEVDILVSVLATYLEKYQK  353 (370)
T ss_pred             C--CCEEEEEeCCh-------hHHHHHHHHHHCCeeEEeeC-CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence            1  11111234322       33556777888999886422 2235789999994  899999999999999877643

>KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism]

Probab=99.73  E-value=4.1e-16  Score=126.86  Aligned_cols=204  Identities=14%  Similarity=0.135  Sum_probs=156.2

Q ss_pred             cCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCccc-EEEEcccccccccCCceEEEEEeeC
Q 042445           17 VFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVP-LLTLGSISKRGIVPGLRLGWLVTSD   95 (246)
Q Consensus        17 ~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~-~i~~~s~sK~~~~~g~r~G~i~~~~   95 (246)
                      +.-+|.+-|   +++|++++++||++.++||+++-..|+..+...-...+--.+ -|+-|+++|.||+-|   |||.++.
T Consensus       313 hSM~Gavcp---leelcDvah~yGAiTFlDEVHAVGlYG~rGaGvgerdGvm~kvDiIsGTLgKafGcVG---GYIAat~  386 (570)
T KOG1360|consen  313 HSMDGAVCP---LEELCDVAHKYGAITFLDEVHAVGLYGPRGAGVGERDGVMHKVDIISGTLGKAFGCVG---GYIAATR  386 (570)
T ss_pred             eccCCCcCC---HHHHHHHHHHhCceeeeehhhhhccccCCCCCccccCCcchhhhhcccchhhhccccc---ceehhhh
Confidence            367888877   899999999999999999999988887654322222111112 388999999999999   9999999


Q ss_pred             CCCCcchhhHHHHHHHHhh---hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCc
Q 042445           96 PNGILQDSGIVDSIKIFLN---ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGS  172 (246)
Q Consensus        96 ~~~~~~~~~~~~~l~~~~~---~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g  172 (246)
                              ++++.++.+..   ++++.+|.....+.++++.-.-+.-...|+..+++.+++++.|.++ |+.  +.|...
T Consensus       387 --------~LvDmiRSyAaGFIFTTSLPP~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~~~-GiP--Vi~~pS  455 (570)
T KOG1360|consen  387 --------KLVDMIRSYAAGFIFTTSLPPMVLAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLMEL-GIP--VIPNPS  455 (570)
T ss_pred             --------hHHHHHHHhcCceEEecCCChHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHc-CCc--ccCCCc
Confidence                    99999999844   3546777777777666663333445667778889999999999987 664  366777


Q ss_pred             eEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC---CCeEEEEeec--ChHHHHHHHHHHHHHHHHH
Q 042445          173 MFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFAV--EPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~iRls~~~--~~~~l~~~~~~l~~~~~~~  242 (246)
                      ..+-+++.+..+     +.+....++.+++|+|..-.+...   ...+|++.+.  +++.++..++.+.....++
T Consensus       456 HIiPv~vgda~l-----~~~~sd~Li~~h~iYvQaINyPTV~rG~E~LRiaPTP~HT~~mm~~lv~~l~~vw~~v  525 (570)
T KOG1360|consen  456 HIIPVRVGDAAL-----AKQASDILISKHNIYVQAINYPTVARGTERLRIAPTPHHTPQMMNILVNALLDVWNEV  525 (570)
T ss_pred             ceeeeeccCHHH-----HHHHHHHHHHhcCeEEEeccCCcccccceeeecCCCCCCCHHHHHHHHHHHHHHHHHc
Confidence            888887876543     677888899999999988665543   6788888774  8888888888888877654

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=99.72  E-value=1.3e-15  Score=129.34  Aligned_cols=142  Identities=15%  Similarity=0.097  Sum_probs=99.8

Q ss_pred             hhhhhhhcc-c----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcc
Q 042445            2 ELINQDITR-E----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGS   76 (246)
Q Consensus         2 e~~~~~~~~-~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s   76 (246)
                      +.+++.+++ +    ++++|+||||.+++   +++|+++|+++|+++|+|++|+......    ++ ..   +..+++.|
T Consensus       127 ~~l~~~i~~~~tklV~ie~p~NPtG~v~d---l~~I~~la~~~gi~livD~t~a~~~~~~----~l-~~---GaDivv~S  195 (385)
T PRK08574        127 EDIIEAIKEGRTKLVFIETMTNPTLKVID---VPEVAKAAKELGAILVVDNTFATPLLYR----PL-RH---GADFVVHS  195 (385)
T ss_pred             HHHHHhcCccCceEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCCccccCC----hh-hh---CCcEEEee
Confidence            455666655 3    88899999999998   7789999999999999999997433211    11 11   23489999


Q ss_pred             cccccccCCceE-EEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 042445           77 ISKRGIVPGLRL-GWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCC  154 (246)
Q Consensus        77 ~sK~~~~~g~r~-G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~  154 (246)
                      ++|.++++|-.+ |++++.+.       ++.++++.... .+..++++..+.+.+.++.     +..+.++..+++..+.
T Consensus       196 ~sK~l~g~~d~~gG~vi~~~~-------~~~~~~~~~~~~~g~~~~p~~a~l~l~~l~t-----L~~R~~~~~~na~~la  263 (385)
T PRK08574        196 LTKYIAGHNDVVGGVAVAWSG-------EFLEELWEWRRRLGTIMQPFEAYLVLRGLKT-----LEVRFERQCRNAMAIA  263 (385)
T ss_pred             CceeecCCCCceeEEEEECcH-------HHHHHHHHHHHhcCCCCCHHHHHHHHcccCc-----HHHHHHHHHHHHHHHH
Confidence            999998877654 66666543       77777776644 3445677666555555553     5556666677888889


Q ss_pred             HHhhcCCCCccc
Q 042445          155 DRLKEIPCITCP  166 (246)
Q Consensus       155 ~~L~~~~~~~~~  166 (246)
                      +.|+++|.+..+
T Consensus       264 ~~L~~~p~v~~V  275 (385)
T PRK08574        264 EFLSEHPKVAEV  275 (385)
T ss_pred             HHHHcCCCcCEE
Confidence            999887766533

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.71  E-value=7.9e-16  Score=132.52  Aligned_cols=205  Identities=15%  Similarity=0.121  Sum_probs=134.4

Q ss_pred             cccCC--cCCCccCC-ChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceE
Q 042445           12 FSDFQ--VFHVGSGF-SGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRL   88 (246)
Q Consensus        12 ~~~~p--~NPtG~~~-~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~   88 (246)
                      ++.-|  ++..|... +.+++++|.++|++||+++|+||++.++...|..+ .....+-.   ..+.++||.++.+++++
T Consensus       203 vi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~-a~~~~~v~---pDi~~~~K~l~gG~~p~  278 (423)
T PRK05964        203 FIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTLF-ACEQAGVS---PDIMCLSKGLTGGYLPL  278 (423)
T ss_pred             EEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchh-HHHhcCCC---CCeeeeehhhhcCcccc
Confidence            44444  35567655 88999999999999999999999999886665332 11222211   22457889986666899


Q ss_pred             EEEEeeCCCCCcchhhHHHHHHHH-------hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc--
Q 042445           89 GWLVTSDPNGILQDSGIVDSIKIF-------LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKE--  159 (246)
Q Consensus        89 G~i~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~--  159 (246)
                      |++++++        ++.+.+...       ...+++.|+++..++.+.++....   +...+..++.-+.+.+.|++  
T Consensus       279 ~av~~~~--------~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l~~---~~~~~~~~~~g~~l~~~l~~l~  347 (423)
T PRK05964        279 AATLCTA--------EIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFED---EPVLERVAALSAGLAEGLEPFR  347 (423)
T ss_pred             eEEEEcH--------HHHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHhhc
Confidence            9999988        888877531       223346799999998888873221   12333444444555555544  


Q ss_pred             -CCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHH
Q 042445          160 -IPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMK  236 (246)
Q Consensus       160 -~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~  236 (246)
                       .+.+.. +. .-|.++.+.+.....   ......+...+.++||.+.+.     .+.+|++..  .++++++++++.+.
T Consensus       348 ~~~~i~~-vr-g~Gl~~~i~l~~~~~---~~~~~~l~~~l~~~Gv~v~~~-----~~~lR~~p~l~~t~edId~~v~~l~  417 (423)
T PRK05964        348 DLPGVAD-VR-VLGAIGAVELDRPVL---ERDGPALRAFALERGVLLRPL-----GNTIYLMPPYIITAEELDRITDAIV  417 (423)
T ss_pred             cCCCeEE-ee-cccEEEEEEeccCcc---hhHHHHHHHHHHHCCeEEEec-----CCEEEEeCCcccCHHHHHHHHHHHH
Confidence             333321 12 235666666653210   002345566677899999873     257999987  49999999999999


Q ss_pred             HHHHH
Q 042445          237 AFYDR  241 (246)
Q Consensus       237 ~~~~~  241 (246)
                      +++++
T Consensus       418 ~al~~  422 (423)
T PRK05964        418 EVADE  422 (423)
T ss_pred             HHHhh
Confidence            99875

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.71  E-value=5.2e-16  Score=133.67  Aligned_cols=207  Identities=15%  Similarity=0.137  Sum_probs=135.6

Q ss_pred             CCcCCCccCCC-hhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEe
Q 042445           15 FQVFHVGSGFS-GSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVT   93 (246)
Q Consensus        15 ~p~NPtG~~~~-~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~   93 (246)
                      .|+| +|.+.+ .+++++|.++|++||+++|+||+|.++.+ +... ....++-.   .-+.++||.++ .|+++|++++
T Consensus       206 v~~~-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~r~-g~~~-~~~~~~~~---pDi~~~gK~l~-~G~p~ga~~~  278 (426)
T PRK00062        206 VAGN-MGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGFRV-ALGG-AQGYYGVT---PDLTTLGKIIG-GGLPVGAFGG  278 (426)
T ss_pred             CcCC-CCCcCCCHHHHHHHHHHHHHcCCEEEEeechhcccc-CCcc-HHHHhCCC---cchHhhhhHhh-CCCcceeeeE
Confidence            3434 677775 78899999999999999999999998843 3222 11222211   11578999986 7899999999


Q ss_pred             eCCCCCcchhhHHHHHHHH----hhhcCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhhcCCCCccccC
Q 042445           94 SDPNGILQDSGIVDSIKIF----LNISSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADKCCDRLKEIPCITCPKK  168 (246)
Q Consensus        94 ~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~  168 (246)
                      ++        ++++.+...    ...+++.+++.++++.+.|+... ++..++.++.....++.+.+.+++++ +..-+.
T Consensus       279 ~~--------~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~vr  349 (426)
T PRK00062        279 RR--------EIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLKEPGFYEELEALTKRLAEGLKEAAKKAG-IPLTVN  349 (426)
T ss_pred             HH--------HHHHhhccCCCceecccCcCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcC-CceEEE
Confidence            88        888888532    22344789999999999888533 23555555555555555555545553 321133


Q ss_pred             CCCceEEEEEeccccccCC-----CC--hHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHHHHH
Q 042445          169 PEGSMFVMVKLNYSLLEGI-----NS--DMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDR  241 (246)
Q Consensus       169 ~~~g~~~~~~~~~~~~~~~-----~~--~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~~~  241 (246)
                      +.|.++ -+.+......+.     .+  ....+...+.++||.+.|..    .+.+++++..++++++++++.|.+++++
T Consensus       350 g~G~~~-~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gv~v~~~~----~~~~~~~~~~t~~ei~~~~~~l~~~l~~  424 (426)
T PRK00062        350 RVGSMF-GLFFTDEPVTNYADAKKSDTERFARFFHAMLDEGVYLAPSQ----FEAGFVSAAHTDEDIEKTLEAARKAFAA  424 (426)
T ss_pred             EecceE-EEEEecCCCcchhhhccccHHHHHHHHHHHHHCCeEeecCC----cCceeeeccCCHHHHHHHHHHHHHHHHh
Confidence            444444 444543210000     01  12345666778999998743    2456788777999999999999999876


Q ss_pred             H
Q 042445          242 H  242 (246)
Q Consensus       242 ~  242 (246)
                      +
T Consensus       425 ~  425 (426)
T PRK00062        425 L  425 (426)
T ss_pred             h
Confidence            4

>PRK08064 cystathionine beta-lyase; Provisional

Probab=99.71  E-value=2.4e-15  Score=128.06  Aligned_cols=207  Identities=14%  Similarity=0.124  Sum_probs=130.1

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.++++    ++++|+||||.+.+   +++|.++|+++|+++|+|++|..+....    ++ .+   +..+++.|+
T Consensus       129 ~~l~~~l~~~tklV~l~~p~NptG~~~d---l~~I~~la~~~g~~vvvD~a~~~~~~~~----~~-~~---g~Divv~S~  197 (390)
T PRK08064        129 EEVAQNIKPNTKLFYVETPSNPLLKVTD---IRGVVKLAKAIGCLTFVDNTFLTPLLQK----PL-DL---GADVVLHSA  197 (390)
T ss_pred             HHHHHhcCCCceEEEEECCCCCCcEecc---HHHHHHHHHHcCCEEEEECCCCcccccC----ch-hh---CCcEEEeec
Confidence            3455556544    88999999999976   7888999999999999999998654221    11 12   234889999


Q ss_pred             ccccccC-CceEEEEEeeCCCCCcchhhHHHHHHHHhhhc-CCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445           78 SKRGIVP-GLRLGWLVTSDPNGILQDSGIVDSIKIFLNIS-SDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD  155 (246)
Q Consensus        78 sK~~~~~-g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  155 (246)
                      +|.++++ |...|++++.+.       ++++.++.....+ ...++.....+.+-+     +.+..+.+...+++..+.+
T Consensus       198 tK~~~G~~~~laG~~v~~~~-------~~~~~l~~~~~~~g~~~~~~~a~l~~~gl-----~tl~~R~~~~~~~a~~la~  265 (390)
T PRK08064        198 TKFLAGHSDVLAGLAVVKDE-------ELAQKLYFLQNSFGAVLGVQDCWLVLRGL-----KTLHVRLEHSSETANKIAL  265 (390)
T ss_pred             ceeccCCccceeEEEEeCCH-------HHHHHHHHHHHhcCCCCCHHHHHHHHccc-----CcHHHHHHHHHHHHHHHHH
Confidence            9998754 466788777653       7888887775543 233444444333222     2366777777888999999


Q ss_pred             HhhcCCCCccccCC----------------CCceEEEEEeccccccCCCChHHHHHHHHHhcCe---EEecCC-------
Q 042445          156 RLKEIPCITCPKKP----------------EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESV---IVLPGI-------  209 (246)
Q Consensus       156 ~L~~~~~~~~~~~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi---~v~pg~-------  209 (246)
                      .|+++|.+..+..|                ..|-.+.+.++         +.+.+..++...++   .+.-|.       
T Consensus       266 ~L~~~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~sf~~~---------~~~~~~~f~~~l~l~~~~~s~G~~~sl~~~  336 (390)
T PRK08064        266 YLQEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTLQ---------SEEAVRQFVSHVKLPVFAVSLGAVESILSY  336 (390)
T ss_pred             HHhcCCCcceEECCCCCCCccHHHHHHhCCCcceEEEEEEC---------CHHHHHHHHHhCCcceEcccCCCCcceeEC
Confidence            99887655433322                12334444453         22345566666676   444441       


Q ss_pred             -----CcCC-----------CCeEEEEeecChHHHHHHHHHHHHHHHHH
Q 042445          210 -----TVGL-----------KDWLRITFAVEPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       210 -----~f~~-----------~~~iRls~~~~~~~l~~~~~~l~~~~~~~  242 (246)
                           ++..           ++.+|+|++.++  .+..++.|.+++++.
T Consensus       337 ~~~~~h~~~~~~~~~~~gi~~~liR~SvGle~--~~dli~dl~~Al~~~  383 (390)
T PRK08064        337 PAKMSHAAMPKEERDERGITDGLLRLSVGLEN--VDDLIADFEQALSYV  383 (390)
T ss_pred             CcccccccCCHHHHHhcCCCCCeEEEEeccCC--HHHHHHHHHHHHHhc
Confidence                 1111           478999999732  234555555555543

>PRK09028 cystathionine beta-lyase; Provisional

Probab=99.70  E-value=3.4e-15  Score=126.54  Aligned_cols=143  Identities=13%  Similarity=0.050  Sum_probs=106.4

Q ss_pred             hhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccc
Q 042445            3 LINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSIS   78 (246)
Q Consensus         3 ~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~s   78 (246)
                      .+++.+.++    ++++|+||||.+   .++++|+++|+++|+++|+|++|+....    ..++ .++   --++++|.+
T Consensus       138 ~l~~~l~~~TklV~lespsNPtg~v---~dl~~I~~la~~~g~~lvvD~t~a~p~~----~~Pl-~~G---aDivv~S~t  206 (394)
T PRK09028        138 GIRELIRPNTKVLFLESPGSITMEV---QDVPTLSRIAHEHDIVVMLDNTWASPIN----SRPF-EMG---VDISIQAAT  206 (394)
T ss_pred             HHHHhcCcCceEEEEECCCCCCCcH---HHHHHHHHHHHHcCCEEEEECCcccccc----CCcc-ccC---ceEEEEeCC
Confidence            455556554    899999999877   5599999999999999999999985331    1122 122   339999999


Q ss_pred             cccccCC-ceEEEEEeeCCCCCcchhhHHHHHHHHh-hhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 042445           79 KRGIVPG-LRLGWLVTSDPNGILQDSGIVDSIKIFL-NISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDR  156 (246)
Q Consensus        79 K~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  156 (246)
                      |.++++| +-.|+++.++        ++.+.++... ..+..++|.....+.+-|+.     +.-+.++..+++..+.+.
T Consensus       207 K~l~Gh~d~~~G~~~~~~--------~~~~~l~~~~~~~G~~~~p~~a~l~~rgl~T-----L~lR~~~~~~na~~la~~  273 (394)
T PRK09028        207 KYIVGHSDVMLGTATANE--------KHWDQLREHSYLMGQCTSPDDVYLAMRGLRT-----LGVRLAQHEKNALKVANW  273 (394)
T ss_pred             eEecCCCCEEEEEEECCH--------HHHHHHHHHHHhcCCCCCHHHHHHHHcccCc-----HHHHHHHHHHHHHHHHHH
Confidence            9997764 6777766554        6667676543 34557788888888777774     777788889999999999


Q ss_pred             hhcCCCCccccCC
Q 042445          157 LKEIPCITCPKKP  169 (246)
Q Consensus       157 L~~~~~~~~~~~~  169 (246)
                      |++.|.+..+..|
T Consensus       274 L~~~p~v~~V~yP  286 (394)
T PRK09028        274 LATRPEVDHVRHP  286 (394)
T ss_pred             HhcCCCccEEECC
Confidence            9998877655444

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=99.70  E-value=9.1e-16  Score=131.30  Aligned_cols=207  Identities=17%  Similarity=0.173  Sum_probs=131.5

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.+.++    ++++| ||||.+.  +.+++|.++|+++|+++|+|+++..+....    .   .+..+..+++.|+
T Consensus       150 ~~l~~~i~~~t~~viv~~~-~~~G~~~--~~l~~i~~la~~~g~~livD~~~~~~~~~~----~---~~~~~~d~~~~s~  219 (398)
T cd00613         150 EALKEEVSEEVAALMVQYP-NTLGVFE--DLIKEIADIAHSAGALVYVDGDNLNLTGLK----P---PGEYGADIVVGNL  219 (398)
T ss_pred             HHHHHhcCCCeEEEEEECC-CCCceec--chHHHHHHHHHhcCCEEEEEeccccccCCC----C---hHHcCCCEEEeec
Confidence            4455666554    67777 6999983  457999999999999999999876433111    0   1112345899999


Q ss_pred             ccccccC----CceEEEEEeeCCCCCcchhhHHHHHHHH------------------------------hhhcCCCCchH
Q 042445           78 SKRGIVP----GLRLGWLVTSDPNGILQDSGIVDSIKIF------------------------------LNISSDPATFI  123 (246)
Q Consensus        78 sK~~~~~----g~r~G~i~~~~~~~~~~~~~~~~~l~~~------------------------------~~~~~~~~~~~  123 (246)
                      +|.+ +|    |+++||++.++        ++++.+...                              .....+.++..
T Consensus       220 ~K~~-~p~g~Ggp~~g~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~  290 (398)
T cd00613         220 QKTG-VPHGGGGPGAGFFAVKK--------ELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALL  290 (398)
T ss_pred             cccC-CCCCCCCCceeEEEEhh--------hhHhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHH
Confidence            9997 65    79999999987        666653110                              00111222333


Q ss_pred             HHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceE--EEEEeccccccCCCChHHHHHHHHHhc
Q 042445          124 QGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMF--VMVKLNYSLLEGINSDMEFALKLAKEE  201 (246)
Q Consensus       124 q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~ll~~~  201 (246)
                      ..++...+....+..+++.++.++++++++.+.|+++++..   .+.+..+  ++++++...  +  .+.+.+...|.++
T Consensus       291 ~~~a~~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~---~~~~~~~~~v~~~~~~~~--~--~~~~~~~~~L~~~  363 (398)
T cd00613         291 ALMAAMYIVYLGPEGLKEIAERAHLNANYLAKRLKEVGGVL---PFNGPFFHEFVLRLPPLY--G--IRAEDLAKALIDG  363 (398)
T ss_pred             HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhcCCcc---cCCCCeeEEEEEEcCCcc--h--HHHHHHHHhhhhc
Confidence            33333333333356778888999999999999999875432   2333433  455554310  0  1334455566788


Q ss_pred             CeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHH
Q 042445          202 SVIVLPGITVGLKDWLRITFAV--EPSALENGLGRM  235 (246)
Q Consensus       202 gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l  235 (246)
                      ||.+.... ....+.+|+++..  ++++++++++.|
T Consensus       364 gi~~~~~~-~~~~~~lRis~~~~~t~edid~~~~~L  398 (398)
T cd00613         364 GFHAPTMY-LPVDGTLMIEPTETETKEELDALLEAL  398 (398)
T ss_pred             Cccccccc-cCCCCeEEEEcCCCCCHHHHHHHHHhC
Confidence            98764321 1236889999984  889999888754

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=99.70  E-value=3.6e-15  Score=126.53  Aligned_cols=210  Identities=13%  Similarity=0.047  Sum_probs=133.6

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccC--C--CCCccccccCCcccEEE
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFG--N--TPFVSMGVFGSIVPLLT   73 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~--~--~~~~~~~~~~~~~~~i~   73 (246)
                      +.+++.++++    +...|+||||.+.+   +++|.++|+++|+++++|++|..+...  +  .....+. +....--.+
T Consensus       144 ~~l~~~l~~~~~~vv~~~~~~~tG~~~~---~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d-~~~~~~d~~  219 (373)
T TIGR03812       144 KDVEDLIDDNTIGIVGIAGTTELGQIDD---IEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFD-FSLPGVQSI  219 (373)
T ss_pred             HHHHHHHhhCcEEEEEECCCCCCCccCC---HHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCcc-ccCCCCCEE
Confidence            3455555432    44557899999966   788889999999999999999865421  0  0000000 000001123


Q ss_pred             EcccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhc---------CCCCchHHHHHHHHHhhchHHHHHHHHH
Q 042445           74 LGSISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNIS---------SDPATFIQGAVPQILEKTEEEFFSKIID  144 (246)
Q Consensus        74 ~~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~q~~~~~~l~~~~~~~~~~~~~  144 (246)
                      ..|..| |++++.+.|+++..++       ++++.+....+..         .+.+.....++..+++......+++..+
T Consensus       220 ~~s~~K-~~~~~~~~G~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~  291 (373)
T TIGR03812       220 TIDPHK-MGLSPIPAGGILFRSK-------SYLKYLSVDAPYLTVKKQATITGTRSGASAAATYAVIKYLGREGYRKIVA  291 (373)
T ss_pred             EECccc-cCCCcCCceEEEEeCH-------HHHhhhcccCcccCCCCCcceEeechhHHHHHHHHHHHHhCHHHHHHHHH
Confidence            346679 5777888887775442       6776664322111         1233455666666666433566778888


Q ss_pred             HHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec-
Q 042445          145 ILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV-  223 (246)
Q Consensus       145 ~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~-  223 (246)
                      +..++++.+.+.|++++ +..+..| ...++.++++.        .. .+.+.|.++||.+.++.   .++++|+++.. 
T Consensus       292 ~~~~~~~~l~~~L~~~g-~~~~~~~-~~~~v~~~~~~--------~~-~v~~~L~~~gi~v~~~~---~~~~iRis~~~~  357 (373)
T TIGR03812       292 ECMENTRYLVEELKKIG-FEPVIEP-VLNIVAFEVDD--------PE-EVRKKLRDRGWYVSVTR---CPKALRIVVMPH  357 (373)
T ss_pred             HHHHHHHHHHHHHHhCC-CeEEcCC-CceEEEEEeCC--------HH-HHHHHHHHCCceeccCC---CCCEEEEEEECC
Confidence            99999999999999884 4323333 34566655542        23 45556778899987653   36799999984 


Q ss_pred             -ChHHHHHHHHHHHH
Q 042445          224 -EPSALENGLGRMKA  237 (246)
Q Consensus       224 -~~~~l~~~~~~l~~  237 (246)
                       ++++++..++.|++
T Consensus       358 ~t~edid~l~~~L~~  372 (373)
T TIGR03812       358 VTREHIEEFLEDLKE  372 (373)
T ss_pred             CCHHHHHHHHHHHhh
Confidence             88899999888864

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=99.69  E-value=6e-15  Score=127.01  Aligned_cols=215  Identities=13%  Similarity=0.103  Sum_probs=135.5

Q ss_pred             hhhhhhhcc---c--cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCC-cccCCCCCccccccCCcccEEEEc
Q 042445            2 ELINQDITR---E--FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGH-LAFGNTPFVSMGVFGSIVPLLTLG   75 (246)
Q Consensus         2 e~~~~~~~~---~--~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~-~~~~~~~~~~~~~~~~~~~~i~~~   75 (246)
                      +.+++.++.   +  ++++++||  ...   ++++|.++|+++|+++|+|++|.. +.+.+.....+.     ...+++.
T Consensus       155 ~~l~~~i~~~~~k~v~~~~~~~~--~~~---~~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~-----~~di~~~  224 (416)
T PRK00011        155 DEVEKLALEHKPKLIIAGASAYS--RPI---DFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVP-----HADVVTT  224 (416)
T ss_pred             HHHHHHHHhcCCCEEEECCCcCC--Ccc---CHHHHHHHHHHcCCEEEEECcchhcccccCccCCCCC-----CCcEEEe
Confidence            345555542   2  44445444  333   489999999999999999999863 232221111221     1237799


Q ss_pred             ccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCC--CCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 042445           76 SISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSD--PATFIQGAVPQILEKTEEEFFSKIIDILRETADKC  153 (246)
Q Consensus        76 s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l  153 (246)
                      |++|.+  +|.|.||++++++       ++.+.++.....+..  .....+.++..++......++++..++++++++.+
T Consensus       225 S~~K~l--~g~~gg~i~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l  295 (416)
T PRK00011        225 TTHKTL--RGPRGGLILTNDE-------ELAKKINSAVFPGIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKAL  295 (416)
T ss_pred             cCCcCC--CCCCceEEEeCCH-------HHHHHHHHHhCccccCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            999975  6788899999743       788888766433221  12223333223332222345678888999999999


Q ss_pred             HHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCC-cC-----CCCeEEEEe------
Q 042445          154 CDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGIT-VG-----LKDWLRITF------  221 (246)
Q Consensus       154 ~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~-f~-----~~~~iRls~------  221 (246)
                      .+.|+++ |+........++++|+.++....     +.+.+.+.|+++||.+..+.. +.     .++.+|++.      
T Consensus       296 ~~~L~~~-g~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~L~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~~~~  369 (416)
T PRK00011        296 AEALAER-GFRVVSGGTDNHLVLVDLRSKGL-----TGKEAEAALEEANITVNKNAVPFDPRSPFVTSGIRIGTPAITTR  369 (416)
T ss_pred             HHHHHhC-CCeeeecCCCCeEEEEeCcccCC-----CHHHHHHHHHHcCcEEccCcCCCCCCCCCCCCceEecCHHHhhc
Confidence            9999987 66532112235888888753211     334466678899999975431 11     156799964      


Q ss_pred             ecChHHHHHHHHHHHHHHHH
Q 042445          222 AVEPSALENGLGRMKAFYDR  241 (246)
Q Consensus       222 ~~~~~~l~~~~~~l~~~~~~  241 (246)
                      +.+++++++.++.|++++..
T Consensus       370 ~~t~~di~~l~~~l~~~~~~  389 (416)
T PRK00011        370 GFKEAEMKEIAELIADVLDN  389 (416)
T ss_pred             CcCHHHHHHHHHHHHHHHhc
Confidence            23688999999999888654

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=99.69  E-value=4.2e-15  Score=127.65  Aligned_cols=83  Identities=16%  Similarity=0.129  Sum_probs=65.1

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.++++    ++++|+||||.+.+   +++|.++|+++|+++|+|++|+.....    .++    ..+..+++.|+
T Consensus       133 ~~l~~~l~~~t~~V~le~p~NPtg~v~d---l~~I~~la~~~~i~livD~t~~~~~~~----~~l----~~g~Divv~S~  201 (418)
T TIGR01326       133 EEFEKAIDENTKAVFAETIGNPAINVPD---IEAIAEVAHAHGVPLIVDNTFATPYLC----RPI----DHGADIVVHSA  201 (418)
T ss_pred             HHHHHhcCcCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCchhhcC----Cch----hcCCeEEEECc
Confidence            4555556544    78899999999986   789999999999999999999743211    111    12356999999


Q ss_pred             ccccccCCceEEEEEeeC
Q 042445           78 SKRGIVPGLRLGWLVTSD   95 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~   95 (246)
                      ||.++++|+|+||++++.
T Consensus       202 sK~l~g~G~~lGg~v~~~  219 (418)
T TIGR01326       202 TKYIGGHGTAIGGVIVDG  219 (418)
T ss_pred             cccccCCccceEEEEEec
Confidence            999999999999999965

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic

Probab=99.69  E-value=4e-15  Score=126.19  Aligned_cols=209  Identities=13%  Similarity=0.105  Sum_probs=135.0

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.++++    ++++|+||||.+.+   +++|.++|+++|+++|+|++|.....    ..++. ++   --++++|+
T Consensus       122 ~~le~~i~~~tklv~le~psnptg~v~d---l~~I~~la~~~g~~vivD~a~~~~~~----~~~l~-~g---~Di~v~S~  190 (378)
T TIGR01329       122 DKVKAALGPKTKLVLLESPTNPLQKIVD---IRKISEMAHAQNALVVVDNTMMSPLL----CNPLE-LG---ADIVYHSA  190 (378)
T ss_pred             HHHHHhcCcCceEEEEECCCCCCCeeec---HHHHHHHHHHcCCEEEEECCCccccc----CChhh-cC---CcEEEEec
Confidence            4566666554    88999999999987   89999999999999999999864321    11221 22   23889999


Q ss_pred             ccccccC-CceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445           78 SKRGIVP-GLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD  155 (246)
Q Consensus        78 sK~~~~~-g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  155 (246)
                      +|.++++ |++.|++++.+.       .+.++++.... .+...++.....+..-++     .+..+.+...++...+.+
T Consensus       191 tK~l~G~~~~~~G~v~~~~~-------~~~~~~~~~~~~~G~~~~~~~a~l~~~~l~-----tl~~R~e~~~~na~~la~  258 (378)
T TIGR01329       191 TKFLAGHSDVMAGVLAVKGE-------EIAKKVYFLQNSTGSGLAPFDCWLLLRGIK-----TLAIRIEKQQENARAIAM  258 (378)
T ss_pred             ceeccCCccceeEEEEeCcH-------HHHHHHHHHHHhcCCcCCHHHHHHHHccCC-----CHHHHHHHHHHHHHHHHH
Confidence            9988764 478999988652       66677776644 333556665554444443     366666777888888888


Q ss_pred             HhhcCCCCccccCCC----------------CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC------
Q 042445          156 RLKEIPCITCPKKPE----------------GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL------  213 (246)
Q Consensus       156 ~L~~~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~------  213 (246)
                      .|+++|.+..+..|.                .|..+.+.+...      +....+...|+..++.+.-|.....      
T Consensus       259 ~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~~~~------~~~~~~~~~L~~~~i~~s~G~~~sl~~~p~~  332 (378)
T TIGR01329       259 FLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFETGSV------ALSKRLVEATKLFSITVSFGSVNSLISMPCF  332 (378)
T ss_pred             HHHhCCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEECCH------HHHHHHHHhCcCcccccCCCCCCceeeCCCc
Confidence            888776554332221                233444445211      2233445556777777777654320      


Q ss_pred             -----------------CCeEEEEeecChHHHHHHHHHHHHHHHH
Q 042445          214 -----------------KDWLRITFAVEPSALENGLGRMKAFYDR  241 (246)
Q Consensus       214 -----------------~~~iRls~~~~~~~l~~~~~~l~~~~~~  241 (246)
                                       ++.||||++.++  .+..++.|.+++++
T Consensus       333 ~~~~~~~~~~~~~~gi~~~liR~svGlE~--~~dl~~dl~~al~~  375 (378)
T TIGR01329       333 MSHASIPAEVREERGLPEDLVRLSVGIED--VDDLISDLDIAFVT  375 (378)
T ss_pred             cccccCCHHHHHhcCCCCCeEEEEeccCC--HHHHHHHHHHHHHh
Confidence                             478999999743  34455666666653

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.68  E-value=4.9e-15  Score=127.32  Aligned_cols=152  Identities=16%  Similarity=0.116  Sum_probs=101.2

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.++++    ++++|+||||.+++   +++|.++|+++|+++|+|++|....    ...++    .....+++.|+
T Consensus       140 e~l~~ai~~~tklV~l~sp~NPtG~v~d---i~~I~~la~~~gi~vIvD~t~a~~~----~~~pl----~~gaDivv~S~  208 (431)
T PRK08248        140 ENFEAAITDKTKALFAETIGNPKGDVLD---IEAVAAIAHEHGIPLIVDNTFASPY----LLRPI----EHGADIVVHSA  208 (431)
T ss_pred             HHHHHhcCCCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEeCCCCccc----cCChh----HcCCCEEEEcC
Confidence            4455666544    77899999999998   6789999999999999999987311    11122    12344888999


Q ss_pred             ccccccCCceEEEEEeeCCCCCc---------------------ch----hhH-HHHHHHH-hhhcCCCCchHHHHHHHH
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGIL---------------------QD----SGI-VDSIKIF-LNISSDPATFIQGAVPQI  130 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~---------------------~~----~~~-~~~l~~~-~~~~~~~~~~~q~~~~~~  130 (246)
                      +|.++++|.++|++++.......                     .+    ... ....... ...+..++|...+.+.+-
T Consensus       209 tK~lgg~g~~~Gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~~rg  288 (431)
T PRK08248        209 TKFIGGHGTSIGGVIVDSGKFDWKGSGKFPGLTEPDPSYHGLVYTDAVGEAAYITKARVQLLRDLGAALSPFNSFLLLQG  288 (431)
T ss_pred             ccccCCCCCceEEEEEeCCccccccccccccccCCccccccchhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHhcC
Confidence            99999999999998885421000                     00    000 0111111 223446677777766666


Q ss_pred             HhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445          131 LEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKP  169 (246)
Q Consensus       131 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~  169 (246)
                      |+.     +..+.++..++...+.+.|+++|.+..+..|
T Consensus       289 l~t-----l~~R~~~~~~nA~~la~~L~~~p~v~~V~yP  322 (431)
T PRK08248        289 LET-----LHLRMERHSENALAVAKFLEEHEAVEWVSYP  322 (431)
T ss_pred             cCc-----HHHHHHHHHHHHHHHHHHHHhCCCcceEECC
Confidence            653     6666777788999999999998877644433

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.68  E-value=4.7e-15  Score=127.28  Aligned_cols=150  Identities=16%  Similarity=0.163  Sum_probs=102.8

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.++++    ++++|+||||.+++   +++|.++|+++|+++|+|++|+.....    .++ ..+   --+++.|+
T Consensus       134 e~le~ai~~~tklV~lesp~NPtG~v~d---l~~I~~la~~~~i~vVvD~a~a~~~~~----~p~-~~g---aDivv~S~  202 (425)
T PRK06084        134 AALEALIDERTKAVFCESIGNPAGNIID---IQALADAAHRHGVPLIVDNTVATPVLC----RPF-EHG---ADIVVHSL  202 (425)
T ss_pred             HHHHHHhccCCcEEEEeCCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcccccC----Chh-hcC---CCEEEECc
Confidence            4556666554    88999999999998   799999999999999999999854321    111 112   23999999


Q ss_pred             ccccccCCceEEEEEeeCCCCCcchhhH----------------------------HHHHH-H-HhhhcCCCCchHHHHH
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGILQDSGI----------------------------VDSIK-I-FLNISSDPATFIQGAV  127 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~----------------------------~~~l~-~-~~~~~~~~~~~~q~~~  127 (246)
                      +|.++++|.++|.+++.+...-..  ..                            ....+ . ....+..+++...+.+
T Consensus       203 tK~l~G~g~~~gG~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~l~~~~a~l~  280 (425)
T PRK06084        203 TKYIGGHGTSIGGIVVDSGKFPWA--EHKERFALLNTPDPSYHGVTYTEAFGPAAFIGRCRVVPLRNMGAALSPFNAFLI  280 (425)
T ss_pred             hhcccccccceeEEEEeCCccchh--hccccccccccCCcccccchhhhhcchHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            999999999999988864210000  00                            00111 1 1234446788777777


Q ss_pred             HHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445          128 PQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKP  169 (246)
Q Consensus       128 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~  169 (246)
                      .+-|+.     +..+.++..++...+.+.|+.+|.+..+..|
T Consensus       281 lrgl~t-----l~~R~~~~~~na~~la~~L~~~p~v~~V~yP  317 (425)
T PRK06084        281 LQGLET-----LALRMERHTENALKVARYLQQHPQVAWVKYA  317 (425)
T ss_pred             HcCcCc-----HHHHHHHHHHHHHHHHHHHHhCCCccEEECC
Confidence            666664     6777777788999999999988876544333

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=99.68  E-value=7.3e-15  Score=125.24  Aligned_cols=207  Identities=12%  Similarity=-0.001  Sum_probs=127.9

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      ++++|+||||...+   +++|.++|+++|+++++|++|+....+   + ....+   +.-+++.|++|.+++ +.++||+
T Consensus       163 ~l~~~~~~tG~~~~---l~~I~~la~~~g~~livD~a~~~g~~~---~-~~~~~---g~D~~~~s~~K~l~~-~~~~G~l  231 (387)
T PRK09331        163 LLTHVDGNYGNLAD---AKKVAKVAHEYGIPFLLNGAYTVGRMP---V-DGKKL---GADFIVGSGHKSMAA-SAPSGVL  231 (387)
T ss_pred             EEECCCCCCccccc---HHHHHHHHHHcCCEEEEECCcccCCcC---C-CHHHc---CCCEEEeeCcccccC-CCCEEEE
Confidence            88899999998766   899999999999999999999853321   1 11122   234789999999764 4589999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhh---------hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLN---------ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPC  162 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~  162 (246)
                      ++++        ++++.+.....         ++++.++....++...+.. ....++ ..+...++.+.+.+.|++++|
T Consensus       232 ~~~~--------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aal~~-~~~~~~-~~~~~~~~~~~l~~~L~~l~g  301 (387)
T PRK09331        232 ATTE--------EYADKVFRTSRKFGVKEVELLGCTLRGAPLVTLMASFPH-VVERVK-RWDEEVKKARWFVDELEKIEG  301 (387)
T ss_pred             EECH--------HHHhhcccccCCCcccceeeeceecCchHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHhcCCC
Confidence            9988        88887755421         1112222233333333331 112232 334456777788999999888


Q ss_pred             CccccC-CCCceEEEEEecccc--ccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee-cChHHHHHHHHHHHHH
Q 042445          163 ITCPKK-PEGSMFVMVKLNYSL--LEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA-VEPSALENGLGRMKAF  238 (246)
Q Consensus       163 ~~~~~~-~~~g~~~~~~~~~~~--~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~-~~~~~l~~~~~~l~~~  238 (246)
                      +..+.. ++...++.++.+...  ..+.......+.+.|.++||...+..   ....+|+... .++++++++++.|++.
T Consensus       302 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~~~---~~~i~ri~~~g~t~~di~~l~~aL~~i  378 (387)
T PRK09331        302 FKQLGEKPRNHDLMKFETPSFDEIAKKHKRRGFFLYEELKKRGIHGIKPG---ATKEFKLSTYGLTWEQVEYVADAFKEI  378 (387)
T ss_pred             EEEeccCcCcCCeEEEeCCchhHHhhhccccchhHHHHHHHcCceEEccC---CceEEEEEeccCCHHHHHHHHHHHHHH
Confidence            774321 333445544444110  00000112335566778899844322   1455666653 4899999999999988


Q ss_pred             HHHH
Q 042445          239 YDRH  242 (246)
Q Consensus       239 ~~~~  242 (246)
                      ++++
T Consensus       379 ~~~~  382 (387)
T PRK09331        379 AEKY  382 (387)
T ss_pred             HHhc
Confidence            7764

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.68  E-value=3.3e-15  Score=123.31  Aligned_cols=214  Identities=16%  Similarity=0.203  Sum_probs=148.3

Q ss_pred             hhhhhhhccc---cccCC-cCCCccCC-ChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcc
Q 042445            2 ELINQDITRE---FSDFQ-VFHVGSGF-SGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGS   76 (246)
Q Consensus         2 e~~~~~~~~~---~~~~p-~NPtG~~~-~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s   76 (246)
                      |.+++++.+.   ++.-| +--.|+.+ ++++++++.++|++||+++|.||++.++..+|+.+ .....+   -..-+-+
T Consensus       175 ~al~~ai~~~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~f-A~e~~g---V~PDI~t  250 (404)
T COG4992         175 EALEAAIDEDTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLF-AYEHYG---VEPDILT  250 (404)
T ss_pred             HHHHHHhccCeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccchHH-HHHHhC---CCCCEEE
Confidence            4556666655   33222 24455544 55799999999999999999999999999888543 222222   2233566


Q ss_pred             cccccccCCceEEEEEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHH
Q 042445           77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADKCC  154 (246)
Q Consensus        77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~  154 (246)
                      +.|.+ ..|+++|.+++.+        ...+.+... +..+++.||++.+++.+.|+... +..+++.    +++-+.+.
T Consensus       251 laK~L-gGG~PigA~la~~--------~~~~~~~~G~HgSTfGGNpLacAv~~a~l~~l~~e~ll~~v----~~~g~~~~  317 (404)
T COG4992         251 LAKAL-GGGFPIGAMLATE--------EIASAFTPGDHGSTFGGNPLACAVALAVLEVLLEEGLLENV----REKGEYLL  317 (404)
T ss_pred             eeccc-cCCccceeeEEch--------hhhhcCCCCcccCCCCcCHHHHHHHHHHHHHHcchhHHHHH----HHHHHHHH
Confidence            78996 5669999999986        666655544 56777999999999999998543 2344443    34444455


Q ss_pred             HHhhc----CCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHH
Q 042445          155 DRLKE----IPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSAL  228 (246)
Q Consensus       155 ~~L~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l  228 (246)
                      +.|++    .|-+..  .-.-|+++-+++....      ....+.+.+.++|+++.+..    ++.+||....  +++++
T Consensus       318 ~~L~~l~~~~~~v~~--vRG~GLmiGiel~~~~------~a~~~~~~~~~~gvL~~~a~----~~ViR~~PpL~i~~eei  385 (404)
T COG4992         318 QRLRELKRRYPLVKE--VRGRGLMIGIELKEPY------RARDIVRALREEGVLVLPAG----PNVIRFLPPLVITEEEI  385 (404)
T ss_pred             HHHHHHhhcCCceee--eecceeEEEEEecCcc------cHHHHHHHHHHCCeEEecCC----CCeEEecCCccCCHHHH
Confidence            55544    431221  2234788888776532      23445667889999998866    6899999884  99999


Q ss_pred             HHHHHHHHHHHHHHhh
Q 042445          229 ENGLGRMKAFYDRHAE  244 (246)
Q Consensus       229 ~~~~~~l~~~~~~~~~  244 (246)
                      ++++++|++++++...
T Consensus       386 ~~~~~~l~~~l~~~~~  401 (404)
T COG4992         386 DEALDALERALAAASA  401 (404)
T ss_pred             HHHHHHHHHHHHHhhh
Confidence            9999999999987654

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=99.68  E-value=4.3e-15  Score=126.18  Aligned_cols=211  Identities=15%  Similarity=0.079  Sum_probs=133.9

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.++++    ++++||||||.+++   +++|.++|+++|+++|+|++++.....-    .   +....--+++.|.
T Consensus       128 ~~l~~~~~~~~~~v~~~~~~n~tG~~~~---~~~i~~l~~~~~~~livD~a~~~g~~~~----~---~~~~~~D~~~~s~  197 (376)
T TIGR01977       128 ERIKRAIKTNTKLIVVSHASNVTGTILP---IEEIGELAQENGIFFILDAAQTAGVIPI----D---MTELAIDMLAFTG  197 (376)
T ss_pred             HHHHHhcCCCCeEEEEECCCCCccccCC---HHHHHHHHHHcCCEEEEEhhhccCccCC----C---chhcCCCEEEecc
Confidence            3455555443    78899999999998   6778899999999999999998544221    1   1111223778889


Q ss_pred             ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHH----------------hhh-cCCCCchHHHHHHHHHhhchHHHHH
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIF----------------LNI-SSDPATFIQGAVPQILEKTEEEFFS  140 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~----------------~~~-~~~~~~~~q~~~~~~l~~~~~~~~~  140 (246)
                      .|.+++|. ..|.++..+..       .+..+...                ..+ .++.+.....++..+++...+.-.+
T Consensus       198 ~K~l~~p~-g~g~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~g~~  269 (376)
T TIGR01977       198 HKGLLGPQ-GTGGLYIREGI-------KLKPLKSGGTGSHSALIDQPSELPDRFESGTLNTPGIAGLNAGIKFIEKIGIA  269 (376)
T ss_pred             cccccCCC-CceEEEEcCCc-------CcCceecCCCccccccccccccchhhccCCCCCHHHHHHHHHHHHHHHHhCHH
Confidence            99876543 35666665531       11111000                001 1234555555555566532233456


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCccccCCC---CceEEEEEeccccccCCCChHHHHHHHHHhc-CeEEecCCCcC----
Q 042445          141 KIIDILRETADKCCDRLKEIPCITCPKKPE---GSMFVMVKLNYSLLEGINSDMEFALKLAKEE-SVIVLPGITVG----  212 (246)
Q Consensus       141 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-gi~v~pg~~f~----  212 (246)
                      ..+++.++..+.+.+.|++.+++..+.+.+   .+..+++.++..       +.+.+...|.++ ||.+.+|..|.    
T Consensus       270 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~~~~~~~L~~~~gi~v~~g~~~~~~~~  342 (376)
T TIGR01977       270 NIAKKECMLTEKLLNGLREINKVKIYGPADPANRVGVVSFTVEGI-------DSEEVADILDEKFDIATRTGLHCAPLAH  342 (376)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCeEEeCCCCccccCCeEEEEECCC-------CHHHHHHHHhccCCEEEEcccccchHHH
Confidence            677788888999999998877765332211   244555555421       334445556555 99999987664    


Q ss_pred             ------CCCeEEEEeec--ChHHHHHHHHHHHH
Q 042445          213 ------LKDWLRITFAV--EPSALENGLGRMKA  237 (246)
Q Consensus       213 ------~~~~iRls~~~--~~~~l~~~~~~l~~  237 (246)
                            ..+.+|+++..  ++++++.+++.|++
T Consensus       343 ~~~g~~~~~~iRis~~~~~t~~dv~~~~~~l~~  375 (376)
T TIGR01977       343 KTIGTFATGTIRLSLGYFNTEEEIEKLLEALSE  375 (376)
T ss_pred             HHhCCCCCCeEEEecCCCCCHHHHHHHHHHHhh
Confidence                  25799999985  88999999998864

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=99.67  E-value=4.7e-15  Score=125.49  Aligned_cols=203  Identities=18%  Similarity=0.113  Sum_probs=139.0

Q ss_pred             cCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCCCcc
Q 042445           22 SGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQ  101 (246)
Q Consensus        22 ~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~  101 (246)
                      .+.|++.++++.++|++||+++|+||++.++..+|+ +..+...+-   ..-+-++||.++. |+.+|.++...      
T Consensus       238 ~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG~-~fa~E~~gv---~PDivt~aK~ig~-G~Pl~avv~r~------  306 (447)
T COG0160         238 IVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGK-MFAFEHFGV---EPDIVTLAKSLGG-GLPLSAVVGRA------  306 (447)
T ss_pred             cCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccc-chhhhhcCC---CCCEEEecccccC-CCceeEEeccH------
Confidence            356778999999999999999999999999998884 334444432   2335567899766 99999999998      


Q ss_pred             hhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHH-HHHHHHHHHhhcCCCCccccCCC-CceEEEEEe
Q 042445          102 DSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILR-ETADKCCDRLKEIPCITCPKKPE-GSMFVMVKL  179 (246)
Q Consensus       102 ~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~-~~~~~l~~~L~~~~~~~~~~~~~-~g~~~~~~~  179 (246)
                        ++.+........+++.||++.+++.+.|+...++.+.+...... ..++.|.+.-++.|-+.   ... -|+++-+++
T Consensus       307 --ei~~~~~g~~~~Tf~GNpva~Aaa~AvL~vie~e~L~~~a~~~G~~l~~~L~~l~~~~~~Ig---dVRG~Glm~giE~  381 (447)
T COG0160         307 --EIMDWPPGGHGGTFGGNPVACAAALAVLDVIEEENLLERAAELGEYLRDRLEELQEKHPLIG---DVRGLGLMIGVEL  381 (447)
T ss_pred             --HhcccCCcccCCCCCcCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHhhcCcee---cccccceEEEEEE
Confidence              88884444455567999999999999998544332222222222 22222222223344222   333 378888888


Q ss_pred             ccccc--cCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHH
Q 042445          180 NYSLL--EGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       180 ~~~~~--~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~  242 (246)
                      ....-  +...+..+.+...+.++|+.+..+..+  .+.+||....  ++++++++++.|.+++++.
T Consensus       382 v~d~~t~~p~~~~~~~i~~~~~~~Glil~~~G~~--~nviRi~PPL~is~e~~d~~l~il~~al~~~  446 (447)
T COG0160         382 VKDRDTKEPDAELAAKIVARAFERGLLLLTCGPH--GNVLRILPPLTISDEELDEGLDILEEALKEA  446 (447)
T ss_pred             ecCCCCCCCCHHHHHHHHHHHHHcCCEEeccCCC--CcEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence            64321  011123455666788999988765533  7899999774  9999999999999999764

>PRK05968 hypothetical protein; Provisional

Probab=99.67  E-value=1.2e-14  Score=123.80  Aligned_cols=195  Identities=16%  Similarity=0.101  Sum_probs=129.6

Q ss_pred             CCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCC-ceEEEEEeeCC
Q 042445           18 FHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPG-LRLGWLVTSDP   96 (246)
Q Consensus        18 NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g-~r~G~i~~~~~   96 (246)
                      ||||.+++..++++|.++|+++|+++|+|++|....+.. +   +. .+   ..+++.|++|.++++| .+.|++++++ 
T Consensus       155 ~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~a~~~~~~-p---~~-~g---~Divv~S~tK~l~g~~~~~gG~i~~~~-  225 (389)
T PRK05968        155 SPTSWVFELQDVAALAALAKRHGVVTMIDNSWASPVFQR-P---IT-LG---VDLVIHSASKYLGGHSDTVAGVVAGSK-  225 (389)
T ss_pred             CCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcchhccC-c---hh-cC---CcEEEeeccccccCCCCeEEEEEEECH-
Confidence            566667777899999999999999999999998655332 1   11 12   1378889999998865 5789888777 


Q ss_pred             CCCcchhhHHHHHHHHhh--hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCC----
Q 042445           97 NGILQDSGIVDSIKIFLN--ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPE----  170 (246)
Q Consensus        97 ~~~~~~~~~~~~l~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~----  170 (246)
                             +++++++....  .+..++++....+...|+.     +..+.++..++.+.+.+.|+++|++..+..|.    
T Consensus       226 -------~~~~~l~~~~~~~~g~~~~~~~A~~~l~~L~t-----l~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~  293 (389)
T PRK05968        226 -------EHIARINAEAYPYLGAKLSPFEAWLLLRGLRT-----LPLRMKAHEASALEIARRLKAHPVVERVCHPALANH  293 (389)
T ss_pred             -------HHHHHHHHHHHHhCCCCCChHHHHHHHcccCc-----HHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCC
Confidence                   88888876532  3336777777777666663     45666666778888999999988886544441    


Q ss_pred             -------CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcC----------------------C-CCeEEEE
Q 042445          171 -------GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG----------------------L-KDWLRIT  220 (246)
Q Consensus       171 -------~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~----------------------~-~~~iRls  220 (246)
                             .|..+.++++...      +...+...|+..++.+.-|..+.                      . ++.+|+|
T Consensus       294 ~~~~~~g~g~~~sf~~~~~~------~~~~f~~~L~~~~~~~s~G~~~slv~p~~~~~~~~~~~~~~~~~gi~~~liR~S  367 (389)
T PRK05968        294 PPAGLSGTSGLFSFIFREGI------DVRAFADALKLFRLGVSWGGHESLVVPAEVVLQQKAQPNSAARFGVSPRSVRLH  367 (389)
T ss_pred             hHHhCCCCceEEEEEECCHH------HHHHHHHhCCccEEecCCCCCCceeeeCcccccccCCHHHHHhcCCCCCeEEEE
Confidence                   1223444454221      33444555666666665554443                      1 4789999


Q ss_pred             eecChHHHHHHHHHHHHHHHH
Q 042445          221 FAVEPSALENGLGRMKAFYDR  241 (246)
Q Consensus       221 ~~~~~~~l~~~~~~l~~~~~~  241 (246)
                      ++.++  .+..++-|.+++++
T Consensus       368 vGlE~--~~dl~~dl~~al~~  386 (389)
T PRK05968        368 VGLEG--TEALWADLEQALAA  386 (389)
T ss_pred             eccCC--HHHHHHHHHHHHHH
Confidence            99733  23455555555543

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=99.67  E-value=3.7e-15  Score=125.83  Aligned_cols=209  Identities=12%  Similarity=0.064  Sum_probs=127.0

Q ss_pred             hhhhhhhccc-----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcc
Q 042445            2 ELINQDITRE-----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGS   76 (246)
Q Consensus         2 e~~~~~~~~~-----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s   76 (246)
                      |.+++.++++     ++++|+||+|.+.+   +++|.++|++||+++|+|++|..      .......++   .-+++.|
T Consensus       139 ~~le~ai~~~t~ai~~v~~~~~~~g~~~~---~~~i~~~a~~~gi~vivD~a~~~------~~~~~~~~g---~D~~~~S  206 (363)
T TIGR01437       139 EQLEAAITEKTAAILYIKSHHCVQKSMLS---VEDAAQVAQEHNLPLIVDAAAEE------DLQKYYRLG---ADLVIYS  206 (363)
T ss_pred             HHHHHhcChhceEEEEEecCCCCcCCcCC---HHHHHHHHHHcCCeEEEECCCCC------chHHHHHcC---CCEEEEe
Confidence            5567777765     35678899999888   67789999999999999999972      111111122   2367788


Q ss_pred             cccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh-hc--CCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 042445           77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN-IS--SDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKC  153 (246)
Q Consensus        77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l  153 (246)
                      ++|.+  +|++.|++++++        ++++.++.... ..  .........++..+++.. ..+..+..+.+.++++.+
T Consensus       207 ~~K~l--~gp~~G~l~~~~--------~~i~~~~~~~~~~~~~~~~~~~~~~gl~aAl~~~-~~~~~~~~~~~~~~~~~l  275 (363)
T TIGR01437       207 GAKAI--EGPTSGLVLGKK--------KYIEWVKLQSKGIGRAMKVGKENILGLTAALEQY-LSTGKESGAEMVAKLTPF  275 (363)
T ss_pred             CCccc--CCCceEEEEEcH--------HHHHHHHhccCCCcceeccCHHHHHHHHHHHHHH-HccCcccHHHHHHHHHHH
Confidence            99975  566899999876        77777643221 10  011112222333333311 112223333444567789


Q ss_pred             HHHhhcCCCCccccCCCC-ce---EEEEEeccccccCCCChHHHHHHHHHhcC--eEEecCCCcCCCCeEEEEeec-ChH
Q 042445          154 CDRLKEIPCITCPKKPEG-SM---FVMVKLNYSLLEGINSDMEFALKLAKEES--VIVLPGITVGLKDWLRITFAV-EPS  226 (246)
Q Consensus       154 ~~~L~~~~~~~~~~~~~~-g~---~~~~~~~~~~~~~~~~~~~~~~~ll~~~g--i~v~pg~~f~~~~~iRls~~~-~~~  226 (246)
                      .+.|++++|+.....+.. +.   ...+.++... .+.  +...+.+.|++++  |.+++  ++...+.+|+++.. +++
T Consensus       276 ~~~L~~i~g~~~~~~~~~~~~~~~~~~v~~~~~~-~g~--~~~~l~~~L~~~~~~I~~r~--~~~~~~~~~l~~~~~~~~  350 (363)
T TIGR01437       276 IEALNTLKGVSASIVQDEAGRDIARAEIRFDESE-LGM--TAADVVQALRQGEPAIYTRG--YKANEGIIEIDPRSVTGG  350 (363)
T ss_pred             HHHHhcCCCeEEEEecCCCCCcCceEEEEEeccC-CCC--CHHHHHHHHhcCCCCEEEee--eeecCCeEEEEeecCCHH
Confidence            999999888874322221 11   1223343210 011  4455566777777  55544  45568899999986 888


Q ss_pred             HHHHHHHHHHHH
Q 042445          227 ALENGLGRMKAF  238 (246)
Q Consensus       227 ~l~~~~~~l~~~  238 (246)
                      +++.++++|.+.
T Consensus       351 e~~~~~~~l~~~  362 (363)
T TIGR01437       351 QLDIIVERIREI  362 (363)
T ss_pred             HHHHHHHHHHHh
Confidence            899998888765

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>PRK07671 cystathionine beta-lyase; Provisional

Probab=99.67  E-value=1.5e-14  Score=122.66  Aligned_cols=145  Identities=13%  Similarity=0.143  Sum_probs=102.0

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.++++    ++++||||||.+.+   +++|.++|+++|+++|+|++|....+..    ++ .++   ..+++.|+
T Consensus       125 ~~l~~ai~~~tklV~le~P~NPtg~~~d---l~~I~~la~~~g~~lvvD~a~~~~~~~~----p~-~~g---~Divv~S~  193 (377)
T PRK07671        125 EEVEEAIRPNTKAIYVETPTNPLLKITD---IKKISTIAKEKGLLTIVDNTFMTPYWQS----PI-SLG---ADIVLHSA  193 (377)
T ss_pred             HHHHHhcCCCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCCccccCC----hh-hhC---CeEEEecC
Confidence            4566666554    88899999998865   8888999999999999999998544331    11 112   24899999


Q ss_pred             ccccccCC-ceEEEEEeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445           78 SKRGIVPG-LRLGWLVTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD  155 (246)
Q Consensus        78 sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  155 (246)
                      ||.+++++ .-.|++++.+.       +++++++..+.. ....++...+.+.+-+.     .+..+.+...++.+.+.+
T Consensus       194 sK~l~G~~~~~~G~~v~~~~-------~l~~~~~~~~~~~g~~~~~~~a~l~~~~l~-----tl~~R~~~~~~na~~la~  261 (377)
T PRK07671        194 TKYLGGHSDVVAGLVVVNSP-------ELAEDLHFVQNSTGGILGPQDSWLLLRGLK-----TLGIRMEEHETNSRAIAE  261 (377)
T ss_pred             cccccCCccceeEEEEeCcH-------HHHHHHHHHHHhhcCCCCHHHHHHHHcCcC-----hHHHHHHHHHHHHHHHHH
Confidence            99998665 45577777553       777777766544 33456665555544443     366677777899999999


Q ss_pred             HhhcCCCCccccCC
Q 042445          156 RLKEIPCITCPKKP  169 (246)
Q Consensus       156 ~L~~~~~~~~~~~~  169 (246)
                      .|++.|++..+..|
T Consensus       262 ~L~~~~~v~~v~~p  275 (377)
T PRK07671        262 FLNNHPAVNKVYYP  275 (377)
T ss_pred             HHHcCCCeeEEECC
Confidence            99987776544433

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=99.67  E-value=1.6e-14  Score=123.80  Aligned_cols=218  Identities=9%  Similarity=0.010  Sum_probs=142.0

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCcc-ccccCCcccEEEEcc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVS-MGVFGSIVPLLTLGS   76 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~-~~~~~~~~~~i~~~s   76 (246)
                      |.+++.+++.    +++..+|-++ ..+   +++|.++|+++|+++++|++|.....++..... .....  ..-++++|
T Consensus       210 d~l~~~~~~~~plvii~g~S~~~~-~~d---l~~i~eia~~~gA~L~VD~AH~~Gligg~~~~~~~~~~~--~~D~vtgT  283 (493)
T PRK13580        210 DEIAALAREFKPLILVAGYSAYPR-RVN---FAKLREIADEVGAVLMVDMAHFAGLVAGKVFTGDEDPVP--HADIVTTT  283 (493)
T ss_pred             HHHHHHHhhcCCEEEEeCccccCC-CcC---HHHHHHHHHHcCCEEEEECchhhceeccccchhhcCCCC--CCcEEEeC
Confidence            4455555543    6666656644 545   889999999999999999999977766433210 00111  12388999


Q ss_pred             cccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445           77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD  155 (246)
Q Consensus        77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  155 (246)
                      ++|.+.+|  +.|++++++        ++++.+....++ .++..+...++++..+.........+.++++.++.+.+.+
T Consensus       284 ~hKaL~GP--~GG~I~~~~--------~l~~~L~~a~P~i~gg~l~p~iAA~avAl~e~~~~ef~~y~~~l~~Na~~La~  353 (493)
T PRK13580        284 THKTLRGP--RGGLVLAKK--------EYADAVDKGCPLVLGGPLPHVMAAKAVALAEARTPEFQKYAQQVVDNARALAE  353 (493)
T ss_pred             ChhhccCC--CeEEEEecH--------HHHHHHhhCCCcccCCCccHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence            99987333  239999987        888888655432 2233333444444444422111225678899999999999


Q ss_pred             HhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC------CCeEEEEeec------
Q 042445          156 RLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL------KDWLRITFAV------  223 (246)
Q Consensus       156 ~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~------~~~iRls~~~------  223 (246)
                      .|.+. |+..+........+++.+....     .+...+.+.|.+.||.+.+-..+..      +..||++...      
T Consensus       354 ~L~~~-G~~vv~ggTdshIV~V~lg~~~-----~~g~~a~~~L~e~GI~vn~i~~Ptvp~g~~~~srLRIg~~A~ttrg~  427 (493)
T PRK13580        354 GFLKR-GARLVTGGTDNHLVLIDVTSFG-----LTGRQAESALLDAGIVTNRNSIPSDPNGAWYTSGIRLGTPALTTLGM  427 (493)
T ss_pred             HHHhc-CCCccCCCCCCCEEEEEeCCHH-----HHHHHHHHHHHHCCeEEccccCCCCCCCCCCCceEEeccchhhhcCC
Confidence            99887 6653222234577777775432     1344677789999999876433322      5689999774      


Q ss_pred             ChHHHHHHHHHHHHHHHH
Q 042445          224 EPSALENGLGRMKAFYDR  241 (246)
Q Consensus       224 ~~~~l~~~~~~l~~~~~~  241 (246)
                      ++++++++++.|.++++.
T Consensus       428 teedi~~iad~l~~~l~~  445 (493)
T PRK13580        428 GSDEMDEVAELIVKVLSN  445 (493)
T ss_pred             CHHHHHHHHHHHHHHHHh
Confidence            578999999999988864

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=99.67  E-value=9.6e-16  Score=128.66  Aligned_cols=189  Identities=15%  Similarity=0.076  Sum_probs=122.2

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      ++++|+||||.+.+   +++|.++|+++|+++++|++|..+.......... .....+-..+..|++|.+ +++.++|++
T Consensus       153 ~~~~~~~~tG~~~~---~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-~~~~~~~d~~~~s~~K~l-~~p~g~g~~  227 (345)
T cd06450         153 VATAGTTDTGAIDP---LEEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHL-DFGIERVDSISVDPHKYG-LVPLGCSAV  227 (345)
T ss_pred             EEecccCCCCCCCC---HHHHHHHHHHhCCeEEEechhhHHHhhChhhHHH-hcCccccCEEEEchhHhh-CCCcchHHH
Confidence            67899999999844   8999999999999999999999776532111111 001011224567899974 455666665


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG  171 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~  171 (246)
                      +.          .                .+.+.++..++.   ...+++..++..+.++.+.+.|++++++..+..++.
T Consensus       228 ~~----------~----------------~~~~~~~l~~l~---~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~  278 (345)
T cd06450         228 LV----------R----------------ALKLWATLRRFG---RDGYGEHIDRIVDLAKYLAELIRADPGFELLGEPNL  278 (345)
T ss_pred             HH----------H----------------HHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCce
Confidence            44          2                223333333343   345677778888899999999998887764444555


Q ss_pred             ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec---ChHHHHHHHHHHHH
Q 042445          172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV---EPSALENGLGRMKA  237 (246)
Q Consensus       172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~---~~~~l~~~~~~l~~  237 (246)
                      +++ .++++...-.+.  +...+.+.|.++|+.+.++..+..++++|+++..   +.++++++++.|.+
T Consensus       279 ~iv-~f~~~~~~~~~~--~~~~i~~~L~~~g~~~~~~~~~~~~~~lRis~~~~~~t~~di~~l~~~l~~  344 (345)
T cd06450         279 SLV-CFRLKPSVKLDE--LNYDLSDRLNERGGWHVPATTLGGPNVLRFVVTNPLTTRDDADALLEDIER  344 (345)
T ss_pred             eEE-EEEECCcchhhH--HHHHHHHHHHhcCCEEEEeeEECCeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence            544 444543100000  3334556677887666665555557899999983   77889999988865

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=99.66  E-value=2.7e-14  Score=121.38  Aligned_cols=212  Identities=17%  Similarity=0.158  Sum_probs=150.8

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      |.++..+.++    .++.-+|.||++.+   +++|+++|+++|+++++|-+++....    ...+..++   .-++..|-
T Consensus       153 ~~~~~~i~~~Tklvais~vSn~tG~~~p---v~~I~~la~~~ga~v~VDaaq~~~h~----~idv~~l~---~Df~afsg  222 (405)
T COG0520         153 DALEKLITPKTKLVALSHVSNVTGTVNP---VKEIAELAHEHGALVLVDAAQAAGHL----PIDVQELG---CDFLAFSG  222 (405)
T ss_pred             HHHHHhcCCCceEEEEECccccccccch---HHHHHHHHHHcCCEEEEECccccCcc----CCCchhcC---CCEEEEcc
Confidence            3455555554    77788999999988   99999999999999999999875331    11223333   33888899


Q ss_pred             ccccccC-CceEEEEEeeCCCCCcchhhHHHHHHHH----------------------hhh-cCCCCchHHHHHHHHHhh
Q 042445           78 SKRGIVP-GLRLGWLVTSDPNGILQDSGIVDSIKIF----------------------LNI-SSDPATFIQGAVPQILEK  133 (246)
Q Consensus        78 sK~~~~~-g~r~G~i~~~~~~~~~~~~~~~~~l~~~----------------------~~~-~~~~~~~~q~~~~~~l~~  133 (246)
                      -|.+.+| |  +|.+.+.+        ++++.+...                      ..+ ...++.....++.++++.
T Consensus       223 HKwl~gP~G--iGvLy~r~--------~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~  292 (405)
T COG0520         223 HKWLLGPTG--IGVLYVRK--------ELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDY  292 (405)
T ss_pred             cccccCCCc--eEEEEEch--------HHHhhcCCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHH
Confidence            9944455 6  89999988        777776220                      011 113444555555556654


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCC--CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCc
Q 042445          134 TEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPE--GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITV  211 (246)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f  211 (246)
                      ..+.-+++..+..++..+++.+.|+++|++..+.++.  .+-.+.+.++..       ....+...|.++||.++.|..|
T Consensus       293 ~~~ig~~~i~~~e~~L~~~~~~~L~~~~~v~i~g~~~~~r~~~vsF~v~~~-------~~~dv~~~L~~~gI~vr~g~~c  365 (405)
T COG0520         293 LLEIGMEAIEAHERELTEYLLEGLSELPGVEIYGPPDADRGGIVSFNVKGI-------HPHDVATLLDEKGIAVRAGHHC  365 (405)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCcccCceEEEEEeCCC-------CHHHHHHHHHhCCeEEEecccc
Confidence            3344577888888999999999999999988665553  344444445543       4566677888999999999888


Q ss_pred             CC--------CCeEEEEeec--ChHHHHHHHHHHHHHHH
Q 042445          212 GL--------KDWLRITFAV--EPSALENGLGRMKAFYD  240 (246)
Q Consensus       212 ~~--------~~~iRls~~~--~~~~l~~~~~~l~~~~~  240 (246)
                      ..        +..+|+|++.  +.++++..++.|+++.+
T Consensus       366 a~p~~~~~~~~~~iR~S~~~YNt~edid~l~~aL~~~~~  404 (405)
T COG0520         366 AQPLHRLLGVDATIRASLHLYNTEEDVDRLLEALKKALA  404 (405)
T ss_pred             ccHHHHhcCCCCceEEEEeecCCHHHHHHHHHHHHHHhh
Confidence            64        5669999994  89999999999988764

>PRK05939 hypothetical protein; Provisional

Probab=99.66  E-value=9.7e-15  Score=124.37  Aligned_cols=152  Identities=14%  Similarity=0.075  Sum_probs=100.5

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      |.+++.++++    ++++|+||||.+.   ++++|.++|+++|+++|+|++|.....    +.+.    ..+..++++|+
T Consensus       122 e~l~~~l~~~tklV~vesp~NptG~v~---dl~~I~~la~~~gi~livD~t~a~~~~----~~~~----~~gaDivv~S~  190 (397)
T PRK05939        122 QNVAAAIRPNTRMVFVETIANPGTQVA---DLAGIGALCRERGLLYVVDNTMTSPWL----FRPK----DVGASLVINSL  190 (397)
T ss_pred             HHHHHhCCCCCeEEEEECCCCCCCCHH---hHHHHHHHHHHcCCEEEEECCcccccc----cCcc----ccCCEEEEecC
Confidence            4566666654    7889999999984   599999999999999999999864221    1111    11345899999


Q ss_pred             ccccccCCceEEEEEeeCCC-C------Ccc-------hhhHHHHHHHH--hhhcCCCCchHHHHHHHHHhhchHHHHHH
Q 042445           78 SKRGIVPGLRLGWLVTSDPN-G------ILQ-------DSGIVDSIKIF--LNISSDPATFIQGAVPQILEKTEEEFFSK  141 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~-~------~~~-------~~~~~~~l~~~--~~~~~~~~~~~q~~~~~~l~~~~~~~~~~  141 (246)
                      ||.+++.|.++|++++++.. .      ...       ....+..++..  ...+..++|.....+.+-++.     +..
T Consensus       191 sK~~~g~g~~igg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~t-----l~~  265 (397)
T PRK05939        191 SKYIAGHGNALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWGLTQIRKKGLRDMGATLSSEAAHRIAIGAET-----LAL  265 (397)
T ss_pred             eecccCCCCeEEEEEecCcccccccccchhhhhhccchhhHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcCc-----HHH
Confidence            99999999999998885320 0      000       00001222221  223435677666666655553     556


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445          142 IIDILRETADKCCDRLKEIPCITCPKKP  169 (246)
Q Consensus       142 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~  169 (246)
                      +.++..++...+.+.|+..|.+..+..|
T Consensus       266 R~~~~~~na~~la~~L~~~p~V~~V~yP  293 (397)
T PRK05939        266 RVDRSCSNALALAQFLEAHPKVARVYYP  293 (397)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCccEEECC
Confidence            6666677999999999988766544444

>PRK06541 hypothetical protein; Provisional

Probab=99.66  E-value=2e-14  Score=124.56  Aligned_cols=215  Identities=11%  Similarity=0.076  Sum_probs=142.9

Q ss_pred             cccCC-cCCCccCCC-hhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCc-eE
Q 042445           12 FSDFQ-VFHVGSGFS-GSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGL-RL   88 (246)
Q Consensus        12 ~~~~p-~NPtG~~~~-~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~-r~   88 (246)
                      ++.-| .++.|.+.+ .+++++|.++|++||+++|.||++.++...+..+ ....++-...+   -++||.++ .|+ ++
T Consensus       225 vi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~~~-a~~~~gv~PDi---vt~gK~l~-~G~~pi  299 (460)
T PRK06541        225 VFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGEMF-GCERFGYVPDI---ITCAKGIT-SGYSPL  299 (460)
T ss_pred             EEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchhh-hhhhcCCCCCE---EEeccccc-CCccce
Confidence            55666 688898765 8999999999999999999999998886555433 22222222233   35899976 776 99


Q ss_pred             EEEEeeCCCCCcchhhHHHHHHHH-----hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 042445           89 GWLVTSDPNGILQDSGIVDSIKIF-----LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCI  163 (246)
Q Consensus        89 G~i~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  163 (246)
                      |++++++        ++++.+...     ...+++.||++.+++.+.++...+   +...+.++++.+.+.+.|+++...
T Consensus       300 gav~~~~--------~i~~~~~~~~~~~~~~~T~~gnp~~~aaala~l~~l~~---~~~~~~~~~~g~~l~~~L~~l~~~  368 (460)
T PRK06541        300 GAMIASD--------RLFEPFLDGPTMFLHGYTFGGHPVSAAVALANLDIFER---EGLLDHVRDNEPAFRATLEKLLDL  368 (460)
T ss_pred             eEEEEcH--------HHHHHhhcCCCccccCCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHhhcC
Confidence            9999998        888877532     123557889998888888874221   134566677777777777664221


Q ss_pred             cc--ccCCCCceEEEEEecccc--ccCCCCh------HHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHH
Q 042445          164 TC--PKKPEGSMFVMVKLNYSL--LEGINSD------MEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENG  231 (246)
Q Consensus       164 ~~--~~~~~~g~~~~~~~~~~~--~~~~~~~------~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~  231 (246)
                      ..  .+. .-|.++-+++....  .....+.      ...+...+.++||.+.+..  ...+.+||+..  .++++++++
T Consensus       369 ~~v~~vr-g~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~--~g~~~lrl~Ppl~~t~~~id~~  445 (460)
T PRK06541        369 PIVGDVR-GDGYFYGIELVKDKATKETFTDDESERLLRGFLSPALFEAGLYCRADD--RGDPVVQLAPPLISGQEEFDEI  445 (460)
T ss_pred             CCeEEEE-ecceEEEEEEecCcccccCCcchhhhhhHHHHHHHHHHhCCeEEEecC--CCCCEEEEECCCCCCHHHHHHH
Confidence            11  122 33556666664321  0000000      1234556778999998731  12478999988  499999999


Q ss_pred             HHHHHHHHHHHhhc
Q 042445          232 LGRMKAFYDRHAEK  245 (246)
Q Consensus       232 ~~~l~~~~~~~~~~  245 (246)
                      +++|.+++++...+
T Consensus       446 ~~~l~~~l~~~~~~  459 (460)
T PRK06541        446 EQILRSVLTEAWAR  459 (460)
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999876543

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=99.65  E-value=2.4e-14  Score=121.14  Aligned_cols=144  Identities=13%  Similarity=0.055  Sum_probs=102.5

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      |.+++.++++    ++++|+||+|...   ++++|+++|+++|+++|+|++|+......    ++ .+   +.-++++|+
T Consensus       126 e~l~~~i~~~tklV~lesp~Np~g~~~---dl~~I~~la~~~g~~livD~t~a~g~~~~----pl-~~---gaDivv~S~  194 (377)
T TIGR01324       126 EDIATLIQPNTKVLFLEAPSSITFEIQ---DIPAIAKAARNPGIVIMIDNTWAAGLLFK----PL-EH---GVDISIQAG  194 (377)
T ss_pred             HHHHHhcCCCceEEEEECCCCCCCcHH---HHHHHHHHHHHcCCEEEEECCCccccccC----cc-cc---CceEEEecC
Confidence            3455666554    8899999997774   59999999999999999999998654321    11 12   233899999


Q ss_pred             ccccccCC-ceEEEEEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445           78 SKRGIVPG-LRLGWLVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD  155 (246)
Q Consensus        78 sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  155 (246)
                      +|.+++++ ...|++++++        +.++.++.. ...+...+|.....+.+.++     .+..+.++..++...+.+
T Consensus       195 tK~l~G~~d~~gG~v~~~~--------~~~~~l~~~~~~~G~~l~p~~a~~~~rgl~-----tl~~R~~~~~~~a~~la~  261 (377)
T TIGR01324       195 TKYLVGHSDIMIGTVVANA--------RTWDQLREHSYLMGQMVDADDAYTTLRGLR-----TLGVRLKQHQESSLAIAK  261 (377)
T ss_pred             ceeccCCCCceEEEEEeCH--------HHHHHHHHHHHHhCCCCCHHHHHHHHhhhh-----hHHHHHHHHHHHHHHHHH
Confidence            99998654 7788888876        777777644 33344567766666655555     356667777888888999


Q ss_pred             HhhcCCCCccccCC
Q 042445          156 RLKEIPCITCPKKP  169 (246)
Q Consensus       156 ~L~~~~~~~~~~~~  169 (246)
                      .|++.|.+..+..|
T Consensus       262 ~L~~~p~v~~v~yp  275 (377)
T TIGR01324       262 WLSEQPEVARVLHP  275 (377)
T ss_pred             HHHhCCCcCEEECC
Confidence            99887766443333

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]

Probab=99.65  E-value=6.7e-15  Score=116.29  Aligned_cols=207  Identities=16%  Similarity=0.151  Sum_probs=154.5

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCC--ccccccCC-cccEEEEcccccccccCCceE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPF--VSMGVFGS-IVPLLTLGSISKRGIVPGLRL   88 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~--~~~~~~~~-~~~~i~~~s~sK~~~~~g~r~   88 (246)
                      .....|||||..+++|+|..|++..++.+...+.|-+|.+|..++...  ..+..+.. ...++++.||+|-||+.+-|+
T Consensus       183 LhaCAhNPTGmDPT~EQW~qia~vik~k~lf~fFDiAYQGfASGD~~~DawAiR~fV~~g~e~fv~QSFaKNfGlYneRv  262 (410)
T KOG1412|consen  183 LHACAHNPTGMDPTREQWKQIADVIKSKNLFPFFDIAYQGFASGDLDADAWAIRYFVEQGFELFVCQSFAKNFGLYNERV  262 (410)
T ss_pred             eeccccCCCCCCCCHHHHHHHHHHHHhcCceeeeehhhcccccCCccccHHHHHHHHhcCCeEEEEhhhhhhcccccccc
Confidence            344558999999999999999999999999999999999998775322  22222222 235899999999999999999


Q ss_pred             EEEE--eeCCCCCcchhhHHHHHHH----H-hhhcCCCCchHHHHHHHHHhhch--HHH---HHHHHHHHHHHHHHHHHH
Q 042445           89 GWLV--TSDPNGILQDSGIVDSIKI----F-LNISSDPATFIQGAVPQILEKTE--EEF---FSKIIDILRETADKCCDR  156 (246)
Q Consensus        89 G~i~--~~~~~~~~~~~~~~~~l~~----~-~~~~~~~~~~~q~~~~~~l~~~~--~~~---~~~~~~~~~~~~~~l~~~  156 (246)
                      |-+.  ..++       ..+..+..    . +..+++++..+...+...|+.+.  +.|   ++.+..++++.|..+++.
T Consensus       263 Gnltvv~~n~-------a~i~~v~SQl~lviR~~~SNPPAyGArIV~kvL~tP~lre~W~~sik~MssRI~~MR~aLrd~  335 (410)
T KOG1412|consen  263 GNLTVVVNNP-------AVIAGVKSQLTLVIRSNWSNPPAYGARIVHKVLSTPELREQWIQSIKTMSSRIKKMRTALRDH  335 (410)
T ss_pred             cceEEEecCh-------hHHHHHHHHHHHHHhhccCCCcchhhHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9854  3332       44444433    2 33466788888888899998765  344   555666777888888888


Q ss_pred             hhcC--CCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec-ChHHHHHHHH
Q 042445          157 LKEI--PCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV-EPSALENGLG  233 (246)
Q Consensus       157 L~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~-~~~~l~~~~~  233 (246)
                      |..+  ||-+....-+-|||.+--+          ....+..+..++.|++.+..        |++++- +...++...+
T Consensus       336 L~aL~TPGtWDHI~~QiGMFSyTGL----------tp~qV~~li~~h~vyLl~~G--------RInisGLN~~NveyVAk  397 (410)
T KOG1412|consen  336 LVALKTPGTWDHITQQIGMFSYTGL----------TPAQVDHLIENHKVYLLSDG--------RINISGLNMKNVEYVAK  397 (410)
T ss_pred             HHhcCCCCcHHHHHhhccceeecCC----------CHHHHHHHHHhceEEEecCC--------cEeeeccccccHHHHHH
Confidence            8764  5655455667899998544          45667888889999999866        899985 8888888888


Q ss_pred             HHHHHHHHHh
Q 042445          234 RMKAFYDRHA  243 (246)
Q Consensus       234 ~l~~~~~~~~  243 (246)
                      .|.++++...
T Consensus       398 AIde~Vr~~~  407 (410)
T KOG1412|consen  398 AIDETVRAIK  407 (410)
T ss_pred             HHHHHHHhhc
Confidence            8888887654

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=99.65  E-value=4.4e-15  Score=128.95  Aligned_cols=208  Identities=14%  Similarity=0.107  Sum_probs=130.9

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEE--ccccCCcccCCCCCccccccCCcccEEEEc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIA--NEVYGHLAFGNTPFVSMGVFGSIVPLLTLG   75 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~--De~y~~~~~~~~~~~~~~~~~~~~~~i~~~   75 (246)
                      |.+++.++++    ++++| ||||.+.+   +++|.++|+++|+++++  |.+..++. .     .   ....+..+++.
T Consensus       195 ~~l~~~i~~~t~~v~l~~p-n~tG~v~~---l~~I~~~a~~~~~~~iv~~d~~~~g~~-~-----~---~~~~~~D~~~~  261 (447)
T PRK00451        195 EALEAAVDDDTAAVVVQYP-NFFGVIED---LEEIAEIAHAGGALFIVGVDPVSLGLL-K-----P---PGEYGADIVVG  261 (447)
T ss_pred             HHHHHhcCCCeEEEEEECC-CCCCeeCC---HHHHHHHHHHCCCEEEEEcChHHhccC-C-----C---cccCCCCEEEE
Confidence            4556666554    78889 99999965   89999999999999988  43321111 0     0   11112223333


Q ss_pred             ---ccccccccCCceEEEEEeeCCCCCcchhhHHHHH----------------------------HHHhh-hcCCCCchH
Q 042445           76 ---SISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSI----------------------------KIFLN-ISSDPATFI  123 (246)
Q Consensus        76 ---s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l----------------------------~~~~~-~~~~~~~~~  123 (246)
                         +|||-+.++|+++||+++++        ++++.+                            +.... .+.+.+...
T Consensus       262 s~~k~~~~~~~~Gpg~G~l~~~~--------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (447)
T PRK00451        262 EGQPLGIPLSFGGPYLGFFATRK--------KLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQAL  333 (447)
T ss_pred             CCCcCCCCCCCCCCCchHHHhhH--------HHHhhCCCCEeeeecccCCCeeeEeeccccccccccccccccccccHHH
Confidence               78888888899999999987        666663                            11111 111222222


Q ss_pred             H-HHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcC
Q 042445          124 Q-GAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEES  202 (246)
Q Consensus       124 q-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~g  202 (246)
                      + .++...+....+..+++.++.+.++++.+.+.|++++++.. .  ++++|.++.+....     ++.++..+ |.++|
T Consensus       334 ~~~aaa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~-~--~~~~~~~~~v~~~~-----~~~~~~~~-L~~~g  404 (447)
T PRK00451        334 NALAAAIYMSLLGPEGLRELAEQNHQKAHYLAERLAEIGGVEL-F--DGPFFNEFVVRLPK-----PAEEVNEA-LLEKG  404 (447)
T ss_pred             HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhhcCCEEe-c--CCCeEEEEEEecCC-----CHHHHHHH-HHhcC
Confidence            3 33333344334567889999999999999999999877764 2  44555442232111     24555554 55666


Q ss_pred             eEE-ecCCCcCC--CCeEEEEee--cChHHHHHHHHHHHHHH
Q 042445          203 VIV-LPGITVGL--KDWLRITFA--VEPSALENGLGRMKAFY  239 (246)
Q Consensus       203 i~v-~pg~~f~~--~~~iRls~~--~~~~~l~~~~~~l~~~~  239 (246)
                      |.+ .++..+..  .+++|+|+.  .+++++++.++.|++.+
T Consensus       405 i~~~~~~~~~~~~~~~~~rvs~~~~~t~e~i~~l~~~L~~~~  446 (447)
T PRK00451        405 ILGGYDLGRYYPELGNHLLVCVTEKRTKEDIDALVAALGEVL  446 (447)
T ss_pred             CCCCcccccccCCcCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence            653 34444432  679999997  38888999888887654

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=99.64  E-value=3.4e-14  Score=122.70  Aligned_cols=200  Identities=19%  Similarity=0.142  Sum_probs=131.9

Q ss_pred             Ccc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCC
Q 042445           20 VGS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNG   98 (246)
Q Consensus        20 tG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~   98 (246)
                      .|. ..+.+++++|.++|++||+++|.||++.++...+..+ ....++-...++   ++||.++ .|+++|++++++   
T Consensus       234 ~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~~~-a~~~~gv~pDiv---t~~K~l~-~G~p~gav~~~~---  305 (441)
T PRK05769        234 GGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGKMF-AIEHFGVEPDII---TLAKAIA-GGLPLGAVIGRA---  305 (441)
T ss_pred             CCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccccee-hhhccCCCCCEE---EEccccc-CCcccEEEEEeh---
Confidence            355 4567899999999999999999999999876665433 222222222333   5899986 689999999988   


Q ss_pred             CcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc----CCCCccccCCCCceE
Q 042445           99 ILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKE----IPCITCPKKPEGSMF  174 (246)
Q Consensus        99 ~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~g~~  174 (246)
                           ++.+.+......+++.++++++++.+.|+...+    ...+..+++-+.+.+.|++    .+.+..  ...-|.+
T Consensus       306 -----~i~~~~~~~~~~T~~g~p~~~aaa~a~L~~l~~----~~~~~~~~~g~~l~~~L~~l~~~~~~~~~--vrg~G~~  374 (441)
T PRK05769        306 -----ELMFLPPGSHANTFGGNPVAAAAALATLEELEE----GLLENAQKLGEYLRKELKELKEKYEFIGD--VRGLGLM  374 (441)
T ss_pred             -----hhhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhCCCeee--eecceEE
Confidence                 666543323334557799999999988874222    4455566666666666654    331211  1223666


Q ss_pred             EEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHH
Q 042445          175 VMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~  242 (246)
                      +-+.+....-+........+...+.++||.+.+..    .+.+||+...  ++++++++++++.+++++.
T Consensus       375 ~~i~~~~~~~~~~~~~~~~~~~~~~~~Gil~~~~~----~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~  440 (441)
T PRK05769        375 IGVELVKDRKEPDPKLRDKVLYEAFKRGLLLLGAG----KSAIRIIPPLIITEEEADIGLEILEEAIKEL  440 (441)
T ss_pred             EEEEeccCCccccHHHHHHHHHHHHhCCcEEecCC----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            66666432100000123345556678999987643    4789999885  9999999999999998754

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=99.64  E-value=3.2e-14  Score=123.01  Aligned_cols=204  Identities=12%  Similarity=0.103  Sum_probs=132.8

Q ss_pred             CCCccC-CChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCC
Q 042445           18 FHVGSG-FSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDP   96 (246)
Q Consensus        18 NPtG~~-~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~   96 (246)
                      ...|.. ++++++++|.++|++||+++|.||++.++...|..+ ....++-...   +-+++|.++ .|+++|++++++ 
T Consensus       218 g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~~~-a~~~~gv~pD---i~t~gK~l~-~G~p~gav~~~~-  291 (445)
T PRK08593        218 GDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWS-SISHFNITPD---LMSFGKSLA-GGMPMSAIVGRK-  291 (445)
T ss_pred             CCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchHH-HHHhcCCCCC---Eeeeccccc-CCcccEEEEEcH-
Confidence            445665 788999999999999999999999999886665422 1122221112   447899975 679999999998 


Q ss_pred             CCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhh----cCCCCccccCCCC
Q 042445           97 NGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLK----EIPCITCPKKPEG  171 (246)
Q Consensus        97 ~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~----~~~~~~~~~~~~~  171 (246)
                             ++++.+... ...+++.+|++++++.+.|+...+.   ...+..+++-+.+.+.|+    +.+.+.. +. .-
T Consensus       292 -------~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~v~~-vr-G~  359 (445)
T PRK08593        292 -------EIMESLEAPAHLFTTGANPVSCAAALATIDMIEDE---SLLQRSAEKGEYARKRFDQWVSKYNFVGD-VR-GY  359 (445)
T ss_pred             -------HHHhhhccCCCCCCCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHhcCCcEEE-Ee-cc
Confidence                   888877532 2345688999999998888743322   223333444444444443    3443321 22 33


Q ss_pred             ceEEEEEeccccccCCC--ChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHHh
Q 042445          172 SMFVMVKLNYSLLEGIN--SDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       172 g~~~~~~~~~~~~~~~~--~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~~  243 (246)
                      |.++.+.+.........  .....+...+.++||.+.+..    .+.+|+++..  ++++++++++.+.+++++..
T Consensus       360 Gl~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~----~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~  431 (445)
T PRK08593        360 GLSIGIDIVSDKKLKTRDNEAALKICNYCFEHGVVIIAVA----GNVLRFQPPLVITYEQLDTALNTIEQAFTALE  431 (445)
T ss_pred             ceEEEEEEecCCCcCCCcHHHHHHHHHHHHHCCeEEeccC----CCEEEEECCCccCHHHHHHHHHHHHHHHHHHh
Confidence            55555666421100000  123345556778999987632    4789998884  99999999999999998764

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=99.64  E-value=1.7e-14  Score=122.99  Aligned_cols=202  Identities=12%  Similarity=0.103  Sum_probs=131.4

Q ss_pred             cccCCcC-CCccC-CChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEE
Q 042445           12 FSDFQVF-HVGSG-FSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLG   89 (246)
Q Consensus        12 ~~~~p~N-PtG~~-~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G   89 (246)
                      ++..|.+ ..|.. .+++++++|.++|++||+++|+||++.++...|..+. ...++-.   .-+.++||.++. |+.+|
T Consensus       183 vi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~~a-~~~~gv~---PDi~t~gK~lg~-G~p~~  257 (395)
T PRK03715        183 VMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFA-YELSGIE---PDIMTLGKGIGG-GVPLA  257 (395)
T ss_pred             EEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcchhh-HhhcCCC---CceeeehhhhhC-CcceE
Confidence            4444544 44554 4689999999999999999999999998766664331 1122211   125678999764 69999


Q ss_pred             EEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcC---CCCccc
Q 042445           90 WLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEI---PCITCP  166 (246)
Q Consensus        90 ~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~~~~  166 (246)
                      .+++++        ++..........+++.+|+..+++.+.|+...+   ....+..+++.+.+.+.|+++   .++.. 
T Consensus       258 av~~~~--------~i~~~~~~~~~~T~~g~pl~~aaala~L~~l~~---~~l~~~~~~~g~~l~~~L~~l~~~~~i~~-  325 (395)
T PRK03715        258 ALLAKA--------EVAVFEAGDQGGTYNGNPLMTAVGVAVISQLLA---PGFLEGVRARGEYLKEKLLELSEERGLEG-  325 (395)
T ss_pred             EEEEcc--------ccccccCCCcCCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHhhcCCcCe-
Confidence            999987        654211112233447789998888888874221   234555666666666666542   13332 


Q ss_pred             cCCCCceEEEEEeccccccCCCChHHHHHHHHHhc---CeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHH
Q 042445          167 KKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEE---SVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDR  241 (246)
Q Consensus       167 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~---gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~  241 (246)
                      +. .-|..+-+.+...       ....+...+.+.   ||.+.+..    .+.+||++..  +++++++++++|.+++++
T Consensus       326 vr-G~Glm~~i~l~~~-------~~~~~~~~~~~~~~~Gi~~~~~~----~~~lR~~p~l~~t~~ei~~~~~~l~~~l~~  393 (395)
T PRK03715        326 ER-GEGLLRALLLGKD-------IGPQIVEKARDMQPDGLLLNAPR----PNLLRFMPALNVTTEEIDQMIAMLRSVLDK  393 (395)
T ss_pred             EE-cceeEEEEEecCc-------hHHHHHHHHHhccCCCEEEeecC----CCEEEEeCCcccCHHHHHHHHHHHHHHHHh
Confidence            22 3366666666532       223344445555   99886532    4789999884  999999999999999876


Q ss_pred             H
Q 042445          242 H  242 (246)
Q Consensus       242 ~  242 (246)
                      +
T Consensus       394 ~  394 (395)
T PRK03715        394 L  394 (395)
T ss_pred             h
Confidence            4

>TIGR02006 IscS cysteine desulfurase IscS

Probab=99.63  E-value=2.4e-14  Score=122.73  Aligned_cols=212  Identities=13%  Similarity=0.064  Sum_probs=135.2

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.++++    ++++++||||.+.+   +++|.++|+++|+++++|++++.....    ..+...   .--+++.|.
T Consensus       133 ~~l~~~l~~~~~lv~v~~~~n~tG~~~~---~~~I~~l~~~~g~~livD~a~a~g~~~----~~~~~~---~~D~~~~s~  202 (402)
T TIGR02006       133 EELKAAIRDDTILVSIMHVNNEIGVIQD---IAAIGEICRERKVFFHVDAAQSVGKIP----INVNEL---KVDLMSISG  202 (402)
T ss_pred             HHHHHhcCCCCEEEEEECCCcCceeccc---HHHHHHHHHHcCCEEEEEcchhcCCcc----cCcccc---CCCEEEEeh
Confidence            3455555443    78899999999987   788999999999999999998753321    111111   223677778


Q ss_pred             ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHH-------hhh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIF-------LNI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRET  149 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~-------~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~  149 (246)
                      .|.+|.+|  +|+++..+.        ....+...       ..+ ..+.+.....++..+++. ....++...++.++.
T Consensus       203 ~K~~gp~G--~G~l~~~~~--------~~~~~~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~-~~~~~~~~~~~~~~l  271 (402)
T TIGR02006       203 HKIYGPKG--IGALYVRRK--------PRVRLEALIHGGGHERGMRSGTLPTHQIVGMGEAFRI-AKEEMAQDTAHVLAL  271 (402)
T ss_pred             hhhcCCCc--eEEEEEccC--------CCCCCCceecCCCccCCccCCCccHHHHHHHHHHHHH-HHHhHHHHHHHHHHH
Confidence            89876556  889888762        11111110       011 124455555566566653 234577778888999


Q ss_pred             HHHHHHHhhcCCCCccccCCC--CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--------------
Q 042445          150 ADKCCDRLKEIPCITCPKKPE--GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--------------  213 (246)
Q Consensus       150 ~~~l~~~L~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--------------  213 (246)
                      ++.+.+.|++++++.....+.  ....+.+.|+..      +..+. ...+  .++.+..|..|..              
T Consensus       272 ~~~l~~~l~~~~~v~~~~~~~~~~p~~~~v~f~~~------~~~~~-~~~l--~~i~v~~G~~c~~~~~~~~~~l~~lg~  342 (402)
T TIGR02006       272 RDRLLNGIKSIEEVYLNGDLEHRVPGNLNVSFNYV------EGESL-IMAL--KDLAVSSGSACTSASLEPSYVLRALGI  342 (402)
T ss_pred             HHHHHHHHhcCCCEEEeCCccccCCCeEEEEEeCc------CHHHH-HHhc--CCEEEechhhcCCCCCCccHHHHHcCC
Confidence            999999998887765321111  111112334321      12333 3333  5888888877642              


Q ss_pred             -----CCeEEEEeec--ChHHHHHHHHHHHHHHHHHh
Q 042445          214 -----KDWLRITFAV--EPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       214 -----~~~iRls~~~--~~~~l~~~~~~l~~~~~~~~  243 (246)
                           .+.+|+|++.  ++++++++++.|.++++++.
T Consensus       343 ~~~~~~~~vR~S~~~~~t~edid~l~~~l~~~~~~~~  379 (402)
T TIGR02006       343 NDELAHSSIRFTIGRFTTEEEIDYAVKLVKSAIDKLR  379 (402)
T ss_pred             ChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence                 3789999995  89999999999999887653

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=99.63  E-value=3.7e-14  Score=120.29  Aligned_cols=141  Identities=14%  Similarity=0.156  Sum_probs=94.6

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      |.+++.++++    ++.+|+||||.+.+   +++|.++|+++|+++|+|++|+...+.. +   + .++   --+++.|+
T Consensus       125 e~l~~ai~~~t~lV~lesP~Nptg~~~d---i~~I~~la~~~gi~vivD~t~a~~~~~~-p---~-~~g---aDivv~S~  193 (380)
T PRK06176        125 SQIKKAIKPNTKALYLETPSNPLLKITD---LAQCASVAKDHGLLTIVDNTFATPYYQN-P---L-LLG---ADIVVHSG  193 (380)
T ss_pred             HHHHHhcCcCceEEEEECCCCCCceecC---HHHHHHHHHHcCCEEEEECCccccccCC-c---c-ccC---CCEEEecC
Confidence            4455666554    77899999999987   7899999999999999999998654331 1   1 122   22889999


Q ss_pred             ccccccCC-ceEEEEEeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445           78 SKRGIVPG-LRLGWLVTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD  155 (246)
Q Consensus        78 sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  155 (246)
                      +|.++++| .-.|++++.+.       ++.++++..... +...++...+.+.+.+.     -+..+.+...++...+.+
T Consensus       194 tK~l~g~~d~~gG~vv~~~~-------~~~~~~~~~~~~~G~~~~~~~~~l~~~gl~-----tl~~R~~~~~~~a~~la~  261 (380)
T PRK06176        194 TKYLGGHSDVVAGLVTTNNE-------ALAQEIAFFQNAIGGVLGPQDSWLLQRGIK-----TLGLRMEAHQKNALCVAE  261 (380)
T ss_pred             ceeccCCccceeeEEEecHH-------HHHHHHHHHHHHhcCCCCHHHHHHHHhccC-----cHHHHHHHHHHHHHHHHH
Confidence            99998776 44566666442       666666655443 32456666555544443     244455555677788888


Q ss_pred             HhhcCCCCcc
Q 042445          156 RLKEIPCITC  165 (246)
Q Consensus       156 ~L~~~~~~~~  165 (246)
                      .|++.|.+..
T Consensus       262 ~L~~~p~v~~  271 (380)
T PRK06176        262 FLEKHPKVEK  271 (380)
T ss_pred             HHHhCCCeeE
Confidence            8887765543

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=99.63  E-value=2.8e-15  Score=126.35  Aligned_cols=202  Identities=12%  Similarity=0.032  Sum_probs=129.0

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.++++    ++++++||||.+.+   +++|.++|+++|+++++|++++.....-    .+.   ..+--+++.|.
T Consensus       129 ~~l~~~l~~~~~lv~~~~~~n~tG~~~~---~~~I~~l~~~~~~~~ivD~a~~~g~~~~----~~~---~~~~D~~~~s~  198 (353)
T TIGR03235       129 DELADAIRPDTLLVSIMHVNNETGSIQP---IREIAEVLEAHEAFFHVDAAQVVGKITV----DLS---ADRIDLISCSG  198 (353)
T ss_pred             HHHHHhCCCCCEEEEEEcccCCceeccC---HHHHHHHHHHcCCEEEEEchhhcCCccc----ccc---ccCCCEEEeeh
Confidence            4455555543    67899999999988   7899999999999999999987543221    111   11223667788


Q ss_pred             ccccccCCceEEEEEeeCCCCCcchhhHHHH--HHHH-------hhh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHH
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDS--IKIF-------LNI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILR  147 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~--l~~~-------~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~  147 (246)
                      .|.++.+|  +|++++++        +....  +...       ... ....+.....++..++.. .....++.+++++
T Consensus       199 ~K~~gp~g--~g~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~-~~~~~~~~~~~~~  267 (353)
T TIGR03235       199 HKIYGPKG--IGALVIRK--------RGKPKAPLKPIMFGGGQERGLRPGTLPVHLIVGMGEAAEI-ARRNAQAWEVKLR  267 (353)
T ss_pred             hhcCCCCc--eEEEEEcc--------CcccccccCceeeCCCCcCccccCCCChHHHHHHHHHHHH-HHhhHHHHHHHHH
Confidence            99876566  89998887        32211  1110       001 124455566666666663 2345677888899


Q ss_pred             HHHHHHHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC----CCeEEEEeec
Q 042445          148 ETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL----KDWLRITFAV  223 (246)
Q Consensus       148 ~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----~~~iRls~~~  223 (246)
                      ++++.+.+.|++ +|+..+..+......++.+...   +.  +.+.+...|++ +|.+.+|..|..    +.++|.+++.
T Consensus       268 ~l~~~l~~~l~~-~g~~~~~~~~~~~~~i~~~~~~---~~--~~~~v~~~L~~-~i~v~~g~~~~~~~~~~~~~l~~~g~  340 (353)
T TIGR03235       268 AMRNQLRDALQT-LGVKLNGDPAETIPHILNFSID---GV--NSEALIVNLRA-DAAVSTGSACSSSKYEPSHVLQAMGL  340 (353)
T ss_pred             HHHHHHHHHhcc-CCeEEeCCcccccCCEEEEEeC---Cc--CHHHHHHHHhC-CeEEEchhhcCCCCCCCCHHHHHcCC
Confidence            999999999988 5776433333222222223211   11  44556666755 899999999865    3478888888


Q ss_pred             ChHHHHHH
Q 042445          224 EPSALENG  231 (246)
Q Consensus       224 ~~~~l~~~  231 (246)
                      +++++..+
T Consensus       341 ~~~~~~~~  348 (353)
T TIGR03235       341 DTDRARGA  348 (353)
T ss_pred             CHHHhCcc
Confidence            76655443

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.62  E-value=3.7e-14  Score=121.33  Aligned_cols=151  Identities=13%  Similarity=0.150  Sum_probs=99.5

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.++++    ++.+|+||++.+.+   +++|.++|+++|+++|+|++|.....    ..++ ..+   --|+++|+
T Consensus       138 ~~l~~~I~~~Tk~I~~e~pgnP~~~v~D---i~~I~~iA~~~gi~livD~T~~tP~~----~~pl-~~G---ADIvv~S~  206 (432)
T PRK06702        138 DEIVALANDKTKLVYAESLGNPAMNVLN---FKEFSDAAKELEVPFIVDNTLATPYL----CQAF-EHG---ANIIVHST  206 (432)
T ss_pred             HHHHHhCCcCCeEEEEEcCCCccccccC---HHHHHHHHHHcCCEEEEECCCCchhh----CChh-hcC---CCEEEEcc
Confidence            4567777765    88899999999988   99999999999999999999862111    1111 112   22999999


Q ss_pred             cc-----ccccCCceE-----EEEEeeCCCCCcc-h--------------hhHHHHH--HHHhhhcCCCCchHHHHHHHH
Q 042445           78 SK-----RGIVPGLRL-----GWLVTSDPNGILQ-D--------------SGIVDSI--KIFLNISSDPATFIQGAVPQI  130 (246)
Q Consensus        78 sK-----~~~~~g~r~-----G~i~~~~~~~~~~-~--------------~~~~~~l--~~~~~~~~~~~~~~q~~~~~~  130 (246)
                      ||     ...++|+++     +|..+++. .+.. +              ..++.+.  .....++..++++....+.+.
T Consensus       207 TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~sp~~a~l~~rg  285 (432)
T PRK06702        207 TKYIDGHASSLGGIVIDGGNFDWTNGKYP-ELVEPDPSYHGVSYVQNFGAAAYIVKARVQLLRDYGNCMSPFNAYISNIG  285 (432)
T ss_pred             ccccCCCcceeceEEEeCCCccccccccc-ccccccccccccchhhccchhhHHHHHHHHHHHHccCCCCHHHHHHHHhc
Confidence            99     544555555     44443221 0000 0              0111111  223445668899999998888


Q ss_pred             HhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445          131 LEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKP  169 (246)
Q Consensus       131 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~  169 (246)
                      |+.     +..+.++..+++..+.+.|+++|.+..+..|
T Consensus       286 L~T-----l~lR~~r~~~Na~~la~~L~~~p~V~~V~yP  319 (432)
T PRK06702        286 LET-----LHLRMERHSENALAVAKWLADHERIEWVNYP  319 (432)
T ss_pred             cCc-----HHHHHHHHHHHHHHHHHHHHhCCCcceEECC
Confidence            884     5556666679999999999988876544333

>PRK07050 cystathionine beta-lyase; Provisional

Probab=99.62  E-value=5.9e-14  Score=119.59  Aligned_cols=140  Identities=14%  Similarity=0.084  Sum_probs=99.3

Q ss_pred             hhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccc
Q 042445            3 LINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSIS   78 (246)
Q Consensus         3 ~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~s   78 (246)
                      .+++.++++    ++++|+||+|   +..++++|.++|+++|+++|+|++|....+..    ++. .+   ..+++.|+|
T Consensus       142 ~l~~~i~~~tklV~le~p~Np~~---~~~di~~I~~ia~~~gi~livD~a~a~~~~~~----~l~-~G---aDi~v~S~t  210 (394)
T PRK07050        142 GIADLIQPNTRLIWLEAPGSVTM---EVPDVPAITAAARARGVVTAIDNTYSAGLAFK----PFE-HG---VDISVQALT  210 (394)
T ss_pred             HHHHhcCCCCeEEEEECCCCCCc---cHhhHHHHHHHHHHcCCEEEEECCcccccccC----HHH-cC---CeEEEEECC
Confidence            455666554    8899999986   45679999999999999999999998644211    111 11   248899999


Q ss_pred             ccccc-CCceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 042445           79 KRGIV-PGLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDR  156 (246)
Q Consensus        79 K~~~~-~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  156 (246)
                      |.+++ .+.+.|++++.+.       ++.++++..+. .+.+.++.....+.+.+..     +..+.++..++...+.+.
T Consensus       211 K~~~g~~~~~gG~v~~~~~-------~~~~~~~~~~~~~G~~~~~~~a~l~lr~l~t-----l~~Rl~~~~~~a~~la~~  278 (394)
T PRK07050        211 KYQSGGSDVLMGATITADA-------ELHAKLKLARMRLGIGVSADDCSLVLRGLPS-----LQVRLAAHDRSALEVAEW  278 (394)
T ss_pred             ceecCCCCeeEEEEEECCH-------HHHHHHHHHHHhcCCCCCHHHHHHHHcCCCc-----HHHHHHHHHHHHHHHHHH
Confidence            99864 4467899888653       78888876654 3446777776666555553     444566667778888889


Q ss_pred             hhcCCCCcc
Q 042445          157 LKEIPCITC  165 (246)
Q Consensus       157 L~~~~~~~~  165 (246)
                      |++.|.+..
T Consensus       279 L~~~p~v~~  287 (394)
T PRK07050        279 LKARPEIAT  287 (394)
T ss_pred             HHhCCCccE
Confidence            988776553

>PRK05967 cystathionine beta-lyase; Provisional

Probab=99.60  E-value=1.9e-13  Score=115.82  Aligned_cols=144  Identities=13%  Similarity=0.086  Sum_probs=102.6

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      |.+++.++++    ++++|+||++   ...++++|+++|+++|+++|+|++|....+.    .++. ++   --+++.|.
T Consensus       140 e~l~~al~~~TklV~lesPsNP~l---~v~dl~~I~~la~~~g~~vvVD~t~a~p~~~----~pl~-~G---aDivv~S~  208 (395)
T PRK05967        140 AGIAKLMRPNTKVVHTEAPGSNTF---EMQDIPAIAEAAHRHGAIVMMDNTWATPLYF----RPLD-FG---VDISIHAA  208 (395)
T ss_pred             HHHHHhcCcCceEEEEECCCCCCC---cHHHHHHHHHHHHHhCCEEEEECCccCceec----ChhH-cC---CCEEEEec
Confidence            3456666654    8899999975   4567999999999999999999999864322    1221 22   22999999


Q ss_pred             cccccc-CCceEEEEEeeCCCCCcchhhHHHHHHHHh-hhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445           78 SKRGIV-PGLRLGWLVTSDPNGILQDSGIVDSIKIFL-NISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD  155 (246)
Q Consensus        78 sK~~~~-~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  155 (246)
                      +|.+++ .+.-.|+++.++        +..++++... ..+..++|...+.+.+-++.     +.-+.++..++...+.+
T Consensus       209 tKy~~Gh~d~~~G~v~~~~--------~~~~~l~~~~~~~G~~~~p~da~l~~rgl~T-----l~lR~~~~~~na~~lA~  275 (395)
T PRK05967        209 TKYPSGHSDILLGTVSANE--------KCWPQLLEAHGTLGLCAGPDDTYQILRGLRT-----MGIRLEHHRKSALEIAR  275 (395)
T ss_pred             ccccCCCCCeeEEEEEcCH--------HHHHHHHHHHHHcCCCCCHHHHHHHHcCccc-----HHHHHHHHHHHHHHHHH
Confidence            999776 447777666655        6666666443 34446777777666666653     66677777889999999


Q ss_pred             HhhcCCCCccccCC
Q 042445          156 RLKEIPCITCPKKP  169 (246)
Q Consensus       156 ~L~~~~~~~~~~~~  169 (246)
                      .|+++|.+..+..|
T Consensus       276 ~L~~hp~v~~V~yP  289 (395)
T PRK05967        276 WLEGRPDVARVLHP  289 (395)
T ss_pred             HHHhCCCCcEEECC
Confidence            99988877544444

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.60  E-value=2.6e-13  Score=116.83  Aligned_cols=152  Identities=14%  Similarity=0.121  Sum_probs=99.3

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.++++    ++++|+||||.+++   +++|.++|+++|+++|+|++|+.....    .++ .++   --+++.|+
T Consensus       139 ~~l~~ai~~~tklV~vesp~NptG~v~d---l~~I~~la~~~gi~livD~a~a~~~~~----~pl-~~g---aDivv~S~  207 (427)
T PRK05994        139 ASFERAITPRTKAIFIESIANPGGTVTD---IAAIAEVAHRAGLPLIVDNTLASPYLI----RPI-EHG---ADIVVHSL  207 (427)
T ss_pred             HHHHHhcCcCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCccccccC----Ccc-ccC---CcEEEEcC
Confidence            3455666554    88899999999987   789999999999999999999843211    122 122   22889999


Q ss_pred             ccccccCCceEEEEEeeCC-CCCcch----------hh-----HHH-----------HHHHHhhhcCCCCchHHHHHHHH
Q 042445           78 SKRGIVPGLRLGWLVTSDP-NGILQD----------SG-----IVD-----------SIKIFLNISSDPATFIQGAVPQI  130 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~-~~~~~~----------~~-----~~~-----------~l~~~~~~~~~~~~~~q~~~~~~  130 (246)
                      +|.++.+|-.+|.+++... ..+...          ..     +.+           ..+.....+..++++..+.+.+-
T Consensus       208 tK~lgg~~~~~gG~v~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~A~l~~~~  287 (427)
T PRK05994        208 TKFLGGHGNSMGGIIVDGGTFDWSKSGKYPMLSEPRPEYHGLVLHETFGNFAFAIAARVLGLRDLGPAISPFNAFLILTG  287 (427)
T ss_pred             ccccCCCCCcEEEEEEeCCccccccccccccccCCcchhhhhhHHHHhhhhhhHHHHHHHHHHhcCCCCCHHHHHHHHcC
Confidence            9999988877887766421 000000          00     111           11122333445677666666555


Q ss_pred             HhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445          131 LEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKP  169 (246)
Q Consensus       131 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~  169 (246)
                      |+.     +..+.++.+++...+.+.|+.+|.+..+..|
T Consensus       288 l~t-----L~~r~~~~~~~a~~la~~L~~~p~v~~v~yP  321 (427)
T PRK05994        288 IET-----LPLRMQRHSDNALAVAEWLKGHPKVSWVNYA  321 (427)
T ss_pred             ccc-----HHHHHHHHHHHHHHHHHHHHhCCCccEEECC
Confidence            553     6777777788899999999988876543333

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=99.60  E-value=8e-14  Score=121.87  Aligned_cols=201  Identities=15%  Similarity=0.122  Sum_probs=131.9

Q ss_pred             cc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCCC
Q 042445           21 GS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGI   99 (246)
Q Consensus        21 G~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~   99 (246)
                      |. .++.+++++|.++|++||+++|.||++.++...|..+. ...++-.   .-+.+++|.++...+.+|.+++++    
T Consensus       274 G~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~a-~e~~gv~---PDivtlgK~lggG~~PigAv~~~~----  345 (504)
T PLN02760        274 GVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMFG-CDKYNIK---PDLVSLAKALSSAYMPIGAVLVSP----  345 (504)
T ss_pred             CCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccchhhH-HHhcCCC---CcEEEecccccCCccccceEeecH----
Confidence            54 45678999999999999999999999998876664332 2222221   226778999754336899999998    


Q ss_pred             cchhhHHHHHHHH--------hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc---CCCCccccC
Q 042445          100 LQDSGIVDSIKIF--------LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKE---IPCITCPKK  168 (246)
Q Consensus       100 ~~~~~~~~~l~~~--------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~---~~~~~~~~~  168 (246)
                          ++.+.+...        +..+++.||++.+++.+.|+...+.   ...+..+++-+.+.+.|++   .+.+.. +.
T Consensus       346 ----~i~d~~~~~~~~~~~~~h~~T~~gnPl~~Aaala~Le~i~~~---~l~~~~~~~g~~l~~~L~~l~~~~~v~~-vr  417 (504)
T PLN02760        346 ----EISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALKIYKER---NIPEHVNKIAPRFQDGIKAFSGSPIIGE-IR  417 (504)
T ss_pred             ----HHHhhhhcccccccCcccCCCCCCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHhcCCCeee-EE
Confidence                888877531        3345678999999999998843321   2334444444444444443   332221 12


Q ss_pred             CCCceEEEEEeccccc--cCCCC---hHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHHHHH
Q 042445          169 PEGSMFVMVKLNYSLL--EGINS---DMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAFYDR  241 (246)
Q Consensus       169 ~~~g~~~~~~~~~~~~--~~~~~---~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~~~  241 (246)
                       .-|.++-+.+.....  +....   -...+...+.++||.+.+..     +.+||+..  .++++++++++++.+++++
T Consensus       418 -G~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g-----~~lrl~Ppl~it~eeid~~~~~l~~al~~  491 (504)
T PLN02760        418 -GTGLILGTEFVDNKSPNDPFPAEWGVGAYFGAECKKRGMLVRVAG-----DNIMMSPPLIITPEEVDELISIYGKALKA  491 (504)
T ss_pred             -eCceEEEEEEecCCcccccccchhHHHHHHHHHHHhCCcEEEecC-----CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence             335666666743210  00000   13345566778999987632     56899966  5999999999999999887


Q ss_pred             Hh
Q 042445          242 HA  243 (246)
Q Consensus       242 ~~  243 (246)
                      .+
T Consensus       492 ~~  493 (504)
T PLN02760        492 TE  493 (504)
T ss_pred             HH
Confidence            64

>PLN02509 cystathionine beta-lyase

Probab=99.60  E-value=1.2e-13  Score=119.18  Aligned_cols=145  Identities=16%  Similarity=0.096  Sum_probs=99.9

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      |.+++.+.++    ++++|+||||.+   .++++|.++|+++|+++|+|++|.......    ++ .++   -.+++.|+
T Consensus       208 e~l~~ai~~~TklV~lesPsNPtG~i---~Dl~~I~~lAk~~g~~lIVD~A~a~~~~~~----pl-~~g---aDivv~S~  276 (464)
T PLN02509        208 DEVAAAIGPQTKLVWLESPTNPRQQI---SDIRKIAEMAHAQGALVLVDNSIMSPVLSR----PL-ELG---ADIVMHSA  276 (464)
T ss_pred             HHHHHhCCcCCeEEEEECCCCCCCCH---HHHHHHHHHHHHcCCEEEEECCccccccCC----hh-hcC---CcEEEecC
Confidence            4566666654    788999999986   569999999999999999999987544321    11 112   23889999


Q ss_pred             ccccccCC-ceEEEEEeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445           78 SKRGIVPG-LRLGWLVTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD  155 (246)
Q Consensus        78 sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  155 (246)
                      +|.++++| .-.|.+++.+.       .+...++..... +...++...+.+.+.|+     .+..+.++.+++++.+.+
T Consensus       277 tK~l~G~gdv~gG~v~~~~~-------~l~~~~~~~~~~~g~~l~p~~A~l~lr~L~-----tL~~R~~r~~~nA~~la~  344 (464)
T PLN02509        277 TKFIAGHSDVMAGVLAVKGE-------KLAKEVYFLQNSEGSGLAPFDCWLCLRGIK-----TMALRIEKQQENARKIAM  344 (464)
T ss_pred             cccccCCCccceeEEEeccH-------HHHHHHHHHHHhcCCCcCHHHHHHHHhhhh-----hHHHHHHHHHHHHHHHHH
Confidence            99988755 34566666552       445554433322 22456666555555444     477788888999999999


Q ss_pred             HhhcCCCCccccCC
Q 042445          156 RLKEIPCITCPKKP  169 (246)
Q Consensus       156 ~L~~~~~~~~~~~~  169 (246)
                      .|+++|.+..+..|
T Consensus       345 ~L~~~p~V~~V~yP  358 (464)
T PLN02509        345 YLSSHPRVKKVYYA  358 (464)
T ss_pred             HHhcCCCccEEECC
Confidence            99988877654444

>PRK14012 cysteine desulfurase; Provisional

Probab=99.59  E-value=8.7e-14  Score=119.35  Aligned_cols=210  Identities=11%  Similarity=0.080  Sum_probs=128.5

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.++++    ++++++||||.+.+   +++|.++|+++|+++|+|++++.....    ..+...+   .-+++.|+
T Consensus       135 ~~l~~~i~~~t~lv~~~~~~n~tG~~~~---~~~I~~la~~~g~~vivD~a~~~g~~~----~~~~~~~---~D~~~~s~  204 (404)
T PRK14012        135 EKLEAAMRDDTILVSIMHVNNEIGVIQD---IAAIGEICRERGIIFHVDAAQSVGKVP----IDLSKLK---VDLMSFSA  204 (404)
T ss_pred             HHHHHhcCCCCEEEEEECcCCCccchhh---HHHHHHHHHHcCCEEEEEcchhcCCcc----cCcccCC---CCEEEEeh
Confidence            4566666654    78899999999987   788999999999999999998753321    1112222   22666789


Q ss_pred             ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHH-h------hh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIF-L------NI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRET  149 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~-~------~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~  149 (246)
                      .|.+| |+ ++|++++++.        ...++... .      .+ ..+.+.....+..+++... .....+..++.++.
T Consensus       205 ~K~~g-p~-g~G~l~~~~~--------~~~~~~~~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~-~~~~~~~~~~~~~l  273 (404)
T PRK14012        205 HKIYG-PK-GIGALYVRRK--------PRVRLEAQMHGGGHERGMRSGTLPTHQIVGMGEAARIA-KEEMATENERIRAL  273 (404)
T ss_pred             hhccC-CC-ceEEEEEecC--------CCCCCCceecCCCccCCccCCCcCHHHHHHHHHHHHHH-HhhHHHHHHHHHHH
Confidence            99764 43 5899988873        11111110 0      01 1122333333333444421 23455566777888


Q ss_pred             HHHHHHHhhcCCCCccccC-C-C--CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC------------
Q 042445          150 ADKCCDRLKEIPCITCPKK-P-E--GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL------------  213 (246)
Q Consensus       150 ~~~l~~~L~~~~~~~~~~~-~-~--~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~------------  213 (246)
                      ++.+.+.|++++++..... + .  ..+++++.+..        ..+. ...+  +++.|..|..|..            
T Consensus       274 ~~~l~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~--------~~~~-~~~l--~~~~i~~g~~~~~~~~~~~~~~~~~  342 (404)
T PRK14012        274 RDRLWNGIKDIEEVYLNGDLEQRVPGNLNVSFNYVE--------GESL-IMAL--KDLAVSSGSACTSASLEPSYVLRAL  342 (404)
T ss_pred             HHHHHHHHhcCCCEEEeCCccccCCCEEEEEEeCcC--------HHHH-HHhC--CCeEEEchhhhCCCCCCCCHHHHHc
Confidence            8888888888776653211 1 1  22344433321        2233 3334  3677777655432            


Q ss_pred             -------CCeEEEEeec--ChHHHHHHHHHHHHHHHHHh
Q 042445          214 -------KDWLRITFAV--EPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       214 -------~~~iRls~~~--~~~~l~~~~~~l~~~~~~~~  243 (246)
                             .+.||+++..  ++++++.+++.|+++++++.
T Consensus       343 ~~~~~~~~~~iRls~~~~~t~~dvd~~~~~l~~~~~~~~  381 (404)
T PRK14012        343 GLNDELAHSSIRFSLGRFTTEEEIDYAIELVRKSIGKLR  381 (404)
T ss_pred             CCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence                   3789999995  89999999999999887653

>PRK07678 aminotransferase; Validated

Probab=99.58  E-value=1.8e-13  Score=118.61  Aligned_cols=206  Identities=15%  Similarity=0.134  Sum_probs=131.9

Q ss_pred             CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCCCcch
Q 042445           23 GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQD  102 (246)
Q Consensus        23 ~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~~  102 (246)
                      .+++++++++.++|++||+++|.||++.+|...|..+ ....++-...   +-+++|.++...+.+|.+++++       
T Consensus       230 ~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~-~~~~~gv~PD---ivt~gK~lggG~~Pi~av~~~~-------  298 (451)
T PRK07678        230 MPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKAF-GFMNYGVKPD---IITMAKGITSAYLPLSATAVKK-------  298 (451)
T ss_pred             cCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCchhH-HHHhcCCCCC---EEEeecccccCCcceeEEEEcH-------
Confidence            4677899999999999999999999999987666432 2222332222   4467899765447999999998       


Q ss_pred             hhHHHHHHHH-------hhhcCCCCchHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceE
Q 042445          103 SGIVDSIKIF-------LNISSDPATFIQGAVPQILEKTEE-EFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMF  174 (246)
Q Consensus       103 ~~~~~~l~~~-------~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~  174 (246)
                       ++.+.+...       +..+++.||++.+++.+.|+...+ ..+++.++.-...++.+.+.+++.+.+.. +. .-|.+
T Consensus       299 -~i~~~~~~~~~~~~~~h~~T~~gnp~~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~-vr-g~Gl~  375 (451)
T PRK07678        299 -EIYEAFKGKGEYEHFRHVNTFGGNPAACALALKNLEIMENENLIERSAQLGELLLEQLKEELGEHPLVGD-IR-GKGLL  375 (451)
T ss_pred             -HHHHHHhccCcccccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCEEE-EE-eeceE
Confidence             888877531       334668899999999999885332 22333333223333333333444443321 22 33555


Q ss_pred             EEEEeccccc--cC-CCChHHHHHHHHHhcCeEEecCCC--cCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHH
Q 042445          175 VMVKLNYSLL--EG-INSDMEFALKLAKEESVIVLPGIT--VGLKDWLRITFAV--EPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       175 ~~~~~~~~~~--~~-~~~~~~~~~~ll~~~gi~v~pg~~--f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~  242 (246)
                      +-+.+.....  .. .......+...+.++||.+.+...  ....+.+||+...  ++++++++++++.++++++
T Consensus       376 ~~i~~~~~~~~~~~~~~~~a~~i~~~l~~~Gv~~~~~g~~v~~~~~~lrl~Ppl~it~~eid~~~~~l~~~l~~~  450 (451)
T PRK07678        376 VGIELVNDKETKEPADNDKVASVVAACKEKGLIIGKNGDTVAGYNNVLTLSPPLVISSEEIAFIVGTLKTALERI  450 (451)
T ss_pred             EEEEEecCCcccCcCchHHHHHHHHHHHHCCcEEeecCccccCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHhc
Confidence            5566642110  00 001234456667789999976322  1225789999775  9999999999999999764

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.58  E-value=5.2e-13  Score=112.83  Aligned_cols=206  Identities=16%  Similarity=0.174  Sum_probs=127.2

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcC-CEEEEccccCCcccCCCCCccccccCCcccEEEEcc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLG-IMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGS   76 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~-~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s   76 (246)
                      +.+++.+.++    ++-.|.||+..+.+   +++|+++|+++| +++++|++++.....    .++. ++   --|++.|
T Consensus       131 ~~l~~~l~~~t~~v~~EspsNP~l~v~D---l~~i~~~a~~~g~~~~vVDnT~atp~~~----~pL~-~G---aDivv~S  199 (386)
T PF01053_consen  131 EALEAALRPNTKLVFLESPSNPTLEVPD---LEAIAKLAKEHGDILVVVDNTFATPYNQ----NPLE-LG---ADIVVHS  199 (386)
T ss_dssp             HHHHHHHCTTEEEEEEESSBTTTTB------HHHHHHHHHHTTT-EEEEECTTTHTTTC-----GGG-GT----SEEEEE
T ss_pred             HHHHhhccccceEEEEEcCCCccccccc---HHHHHHHHHHhCCceEEeeccccceeee----ccCc-CC---ceEEEee
Confidence            4566666655    88899999987766   999999999998 999999999854322    1221 22   2289999


Q ss_pred             cccccccCCceE-EEEEeeCCCCCcchhhHHHHHHHHh-hhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 042445           77 ISKRGIVPGLRL-GWLVTSDPNGILQDSGIVDSIKIFL-NISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCC  154 (246)
Q Consensus        77 ~sK~~~~~g~r~-G~i~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~  154 (246)
                      .+|.+++.+--+ |.+++++.      +++.+.++... ..+..++|.....+.+-++.     +.-+.++..++...+.
T Consensus       200 ~TKyl~Ghsdv~~G~vv~~~~------~~~~~~l~~~~~~~G~~~~p~da~ll~rgl~T-----l~~R~~~~~~nA~~lA  268 (386)
T PF01053_consen  200 ATKYLSGHSDVMGGAVVVNGS------SELYDRLREFRRLLGATLSPFDAWLLLRGLRT-----LPLRMERQNENAEALA  268 (386)
T ss_dssp             TTTTTTTSSSE-EEEEEESSH------HHHHHHHHHHHHHHT-B--HHHHHHHHHHHTT-----HHHHHHHHHHHHHHHH
T ss_pred             ccccccCCcceeeEEEEECch------hhhhhhhcchhhhcCccchHHHHHHHhcCCCc-----HHHHHHHHHHHHHHHH
Confidence            999998766554 55554431      16777776553 34446788888877777774     7777777899999999


Q ss_pred             HHhhcCCCCccccCC----------------CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC-----
Q 042445          155 DRLKEIPCITCPKKP----------------EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-----  213 (246)
Q Consensus       155 ~~L~~~~~~~~~~~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-----  213 (246)
                      +.|++.|.+..+..|                .+|..+.++++..        .+.+.+++..-.+. ..|..++.     
T Consensus       269 ~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~~--------~~~~~~f~~~l~l~-~~~~SlGg~~SLi  339 (386)
T PF01053_consen  269 EFLEEHPKVKRVYYPGLPSHPQHELAKRQMSGGGGLLSFELKGG--------EEAARRFLDALKLF-SIAPSLGGVESLI  339 (386)
T ss_dssp             HHHHTSTTEEEEEETTSTTSTTHHHHHHHCSSCTSEEEEEESSH--------HHHHHHHHHH-SSS-EESSS-SSSS-EE
T ss_pred             HHHHhCCCCCeEEEcccccccceeeeeecccccCceeEEEeccc--------hhhhHhHHhhhhhH-hhhhhcCCccccc
Confidence            999998877654444                2334555666642        23444455444443 11222210     


Q ss_pred             ----------------------CCeEEEEeecChHHHHHHHHHHHHHHH
Q 042445          214 ----------------------KDWLRITFAVEPSALENGLGRMKAFYD  240 (246)
Q Consensus       214 ----------------------~~~iRls~~~~~~~l~~~~~~l~~~~~  240 (246)
                                            ++.||+|++.++  .+.+++.|.++++
T Consensus       340 ~~p~~~~h~~~~~e~~~~~Gi~~~liRlSvGlEd--~~dLi~Dl~~AL~  386 (386)
T PF01053_consen  340 SHPASTSHRSLSPEERAEAGISDGLIRLSVGLED--PDDLIADLEQALE  386 (386)
T ss_dssp             EETTCTTTTTSCHHHHHHTTS-TTEEEEE--SS---HHHHHHHHHHHHH
T ss_pred             ccccchhhccCChhhhhccCCCCCeeEEEeccCC--HHHHHHHHHHhcC
Confidence                                  478999999743  3455666666653

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=99.58  E-value=3.8e-13  Score=116.51  Aligned_cols=198  Identities=11%  Similarity=0.063  Sum_probs=133.5

Q ss_pred             cc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCC-ceEEEEEeeCCCC
Q 042445           21 GS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPG-LRLGWLVTSDPNG   98 (246)
Q Consensus        21 G~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g-~r~G~i~~~~~~~   98 (246)
                      |. ..|+++++++.++|++||+++|.||++.++...|..+ ....++-...   +-+++|.++ .| +.+|.+++.+   
T Consensus       245 G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~-a~e~~gv~PD---ivt~gK~lg-gG~~Pigav~~~~---  316 (459)
T PRK11522        245 GVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMF-ACEHENVQPD---ILCLAKALG-GGVMPIGATIATE---  316 (459)
T ss_pred             CCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccchhh-hhhccCCCCC---EEEechhhh-CCCccceeEEEcH---
Confidence            44 4577899999999999999999999998876555432 2222222222   337899965 56 6999999988   


Q ss_pred             CcchhhHHHHHHHH---hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc----CCC-CccccCCC
Q 042445           99 ILQDSGIVDSIKIF---LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKE----IPC-ITCPKKPE  170 (246)
Q Consensus        99 ~~~~~~~~~~l~~~---~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~-~~~~~~~~  170 (246)
                           ++.+.+...   ...+++.||++.+++.+.|+...+.   ...+..+++-+++.+.|++    .|+ +.. +. .
T Consensus       317 -----~i~~~~~~~~~~~~~T~~gnp~~~Aaala~L~~i~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~-Vr-G  386 (459)
T PRK11522        317 -----EVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQ---NLPAQAEQKGDYLLDGFRQLAREYPDLVQE-AR-G  386 (459)
T ss_pred             -----HHHHHhccCCcccCCCCCCCHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHHHHHhCCCceee-EE-e
Confidence                 877766421   2344577999999999988853322   2344455555556665554    332 221 12 3


Q ss_pred             CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHHhh
Q 042445          171 GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDRHAE  244 (246)
Q Consensus       171 ~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~~~  244 (246)
                      -|.++.+.+....      ....+...+.++||.+.+..  ...+.+|+++..  +++++++++++|.+++++..+
T Consensus       387 ~Gl~~giel~~~~------~~~~i~~~l~~~Gvl~~~~~--~~~~~lr~~Ppl~~t~~~id~~l~~l~~~l~~~~~  454 (459)
T PRK11522        387 KGMLMAIEFVDNE------IGYNFASEMFRQRVLVAGTL--NNAKTIRIEPPLTLTIEQCEQVLKAARKALAAMRV  454 (459)
T ss_pred             ceeEEEEEecCch------HHHHHHHHHHHCCeEEEecC--CCCCEEEEECCccCCHHHHHHHHHHHHHHHHHHHH
Confidence            4677777775431      33445566778999987642  125789999874  999999999999999987654

>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.58  E-value=1.6e-13  Score=109.43  Aligned_cols=204  Identities=16%  Similarity=0.143  Sum_probs=138.7

Q ss_pred             CCCccC-CChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCC
Q 042445           18 FHVGSG-FSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDP   96 (246)
Q Consensus        18 NPtG~~-~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~   96 (246)
                      --.|++ +++..+++..++|++||+++|.||+++++..+|+.. ....-+-...++.   ++|++.+.=..+..+++++ 
T Consensus       218 GEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk~l-a~d~env~PDivi---lgKalSGG~~Pvsavl~~~-  292 (427)
T KOG1402|consen  218 GEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGKLL-ACDYENVRPDIVI---LGKALSGGVYPVSAVLADD-  292 (427)
T ss_pred             cccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCcEE-EeehhhcCCCeEE---EeccccCCeeeeEEEEecH-
Confidence            345554 455799999999999999999999999999887532 2221111123333   5599766668999999999 


Q ss_pred             CCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc-CCCCccccCCCCceE
Q 042445           97 NGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKE-IPCITCPKKPEGSMF  174 (246)
Q Consensus        97 ~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~g~~  174 (246)
                             +++..++.. +..+++.||++.+++.++|+-..++-+.++.+.+.+....-...|+. +|++...+. .-|++
T Consensus       293 -------~im~~~~pgeHgsTyggNpLg~~vaiAalevi~eekL~era~~lG~~l~~~L~~l~~~~p~~v~~VR-GrGl~  364 (427)
T KOG1402|consen  293 -------DIMLNIKPGEHGSTYGGNPLGCAVAIAALEVIVEEKLVERAAKLGEILRDQLNKLQKKFPHVVKEVR-GRGLL  364 (427)
T ss_pred             -------HHHhccCCCccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhheee-ccceE
Confidence                   888887765 66777999999999999998544555555555444433333333332 455443233 33777


Q ss_pred             EEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHH
Q 042445          175 VMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYD  240 (246)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~  240 (246)
                      .-+.+......+ .+..+.+. .+++.|++.-|-.    .+-|||+...  ++++++++++.|.+.+.
T Consensus       365 ~ai~i~~~~~~~-~~aw~~cl-~lk~~g~LAkptH----~~IiRfaPPL~I~e~dl~eg~e~i~k~i~  426 (427)
T KOG1402|consen  365 NAIVINPSKTSG-QDAWDVCL-ALKENGLLAKPTH----GNIIRFAPPLVISEEDLREGIEAIEKTIA  426 (427)
T ss_pred             EEEEeccccccc-hhHHHHHH-cccccccccCCCC----CCeEEecCCcccCHHHHHHHHHHHHHHhc
Confidence            777776432111 13455544 5778898877633    6789999774  99999999999998874

>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.57  E-value=2.9e-13  Score=116.37  Aligned_cols=152  Identities=13%  Similarity=0.104  Sum_probs=101.1

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      |.+++.++++    ++.+|+||+|.+.+   +++|.++|+++|+++|+|+++.....    ..++ .++   --+++.|+
T Consensus       146 e~l~~ai~~~tklV~ie~~sNp~G~v~D---l~~I~~la~~~gi~liVD~t~a~~~~----~~pl-~~G---aDivv~S~  214 (436)
T PRK07812        146 DAWRAAVRPNTKAFFAETISNPQIDVLD---IPGVAEVAHEAGVPLIVDNTIATPYL----IRPL-EHG---ADIVVHSA  214 (436)
T ss_pred             HHHHHhCCCCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCccccc----CCch-hcC---CCEEEEec
Confidence            3455556554    77899999999988   88899999999999999998874322    1122 122   22777999


Q ss_pred             ccccccCCceEEEEEeeCCC-CC---------------c----c---hhhHHHHHH--HHhhhcCCCCchHHHHHHHHHh
Q 042445           78 SKRGIVPGLRLGWLVTSDPN-GI---------------L----Q---DSGIVDSIK--IFLNISSDPATFIQGAVPQILE  132 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~-~~---------------~----~---~~~~~~~l~--~~~~~~~~~~~~~q~~~~~~l~  132 (246)
                      +|.+++.|--+|++++.... ..               .    .   ...++.+++  .....+..++|...+.+.+-|+
T Consensus       215 tK~lgg~G~~i~G~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~~rgl~  294 (436)
T PRK07812        215 TKYLGGHGTAIAGVIVDGGTFDWTQGRFPGFTTPDPSYHGVVFAELGPPAYALKARVQLLRDLGSAISPFNAFLIAQGLE  294 (436)
T ss_pred             ccccCCCCCeEEEEEEcCCccccccccccccccCCcccccchhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHhcCcC
Confidence            99999998878887774310 00               0    0   001111222  1233455678877777666666


Q ss_pred             hchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445          133 KTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKP  169 (246)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~  169 (246)
                      .     +..+.++..++...+.+.|+++|.+..+..|
T Consensus       295 t-----L~~R~~~~~~nA~~la~~L~~~p~v~~V~yP  326 (436)
T PRK07812        295 T-----LSLRIERHVANAQRVAEFLEARDEVASVNYA  326 (436)
T ss_pred             c-----HHHHHHHHHHHHHHHHHHHHhCCCccEEECC
Confidence            4     6777777789999999999998877544444

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=99.56  E-value=3.1e-13  Score=116.15  Aligned_cols=192  Identities=13%  Similarity=0.135  Sum_probs=129.9

Q ss_pred             cc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCC-ceEEEEEeeCCCC
Q 042445           21 GS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPG-LRLGWLVTSDPNG   98 (246)
Q Consensus        21 G~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g-~r~G~i~~~~~~~   98 (246)
                      |. .++++.+++|.++|++||+++|+||++.++...|..+. ...++-...++   +++|.++ .| +.+|.+++++   
T Consensus       219 g~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~~fa-~~~~gv~PDi~---t~gK~l~-gG~~p~~av~~~~---  290 (428)
T PRK07986        219 GMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLFA-CEHAGIAPDIL---CLGKALT-GGTMTLSATLTTR---  290 (428)
T ss_pred             CcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCCeee-ecccCCCCCEE---Eechhhh-CCcccCcchhchH---
Confidence            54 45679999999999999999999999988755554332 12222222233   5899974 56 6889999988   


Q ss_pred             CcchhhHHHHHHHH------hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcC---CCCccccCC
Q 042445           99 ILQDSGIVDSIKIF------LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEI---PCITCPKKP  169 (246)
Q Consensus        99 ~~~~~~~~~~l~~~------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~~~~~~~  169 (246)
                           ++.+.+...      ...+++.||++.+++.+.|+.-.+.   ...+..+++-+++.+.|+++   +.+.. +. 
T Consensus       291 -----~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~L~~i~~~---~~~~~~~~~g~~l~~~l~~l~~~~~i~~-vR-  360 (428)
T PRK07986        291 -----EVAETISNGEAGCFMHGPTFMGNPLACAVANASLSLLESG---DWQQQVAAIEAQLREELAPLRDAPMVAD-VR-  360 (428)
T ss_pred             -----HHHHHhhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHhcCCCEEe-Ee-
Confidence                 888887642      2345578999999999888743222   23444455555555555543   32221 11 


Q ss_pred             CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHHHHH
Q 042445          170 EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAFYDR  241 (246)
Q Consensus       170 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~~~  241 (246)
                      .-|+++-+.+....      ....+...+.++||.+.+.     .+.+||+..  .+++++++++++|.+++++
T Consensus       361 g~Gl~~~ve~~~~~------~~~~~~~~l~~~Gl~~~~~-----g~~i~~~Ppl~it~~ei~~~~~~l~~~l~~  423 (428)
T PRK07986        361 VLGAIGVVETTRPV------NMAALQRFFVEQGVWIRPF-----GKLIYLMPPYIILPEQLQRLTAAVNRAVQD  423 (428)
T ss_pred             ccceEEEEEeCCcc------cHHHHHHHHHHCCcEEEec-----CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence            23666666665331      3445566778999999874     258999766  4999999999999999864

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=99.56  E-value=6.3e-13  Score=112.80  Aligned_cols=202  Identities=19%  Similarity=0.250  Sum_probs=137.1

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.+.++    +++..+|-||+..+   +++|.++|+++|+++++|-+++....+    ..+..++   --+++.|.
T Consensus       130 ~~~~~~l~~~~~lv~~~~~~~~tG~~~p---i~~I~~~~~~~~~~~~vD~~~~~g~~~----id~~~~~---~D~~~~s~  199 (371)
T PF00266_consen  130 EDLEEALNPDTRLVSISHVENSTGVRNP---IEEIAKLAHEYGALLVVDAAQSAGCVP----IDLDELG---ADFLVFSS  199 (371)
T ss_dssp             HHHHHHHHTTESEEEEESBETTTTBBSS---HHHHHHHHHHTTSEEEEE-TTTTTTSS------TTTTT---ESEEEEES
T ss_pred             hhhhhhhccccceEEeecccccccEEee---eceehhhhhccCCceeEechhcccccc----ccccccc---cceeeecc
Confidence            3455666654    56666789999988   889999999999999999998854422    1122222   23788999


Q ss_pred             ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh---------------------h-cCCCCchHHHHHHHHHhhch
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN---------------------I-SSDPATFIQGAVPQILEKTE  135 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~---------------------~-~~~~~~~~q~~~~~~l~~~~  135 (246)
                      -|.+|.+|  +|+++.++        +.+++++....                     + ..+.+.....++..+++...
T Consensus       200 ~Kl~gp~G--~g~l~v~~--------~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~  269 (371)
T PF00266_consen  200 HKLGGPPG--LGFLYVRP--------EAIERLRPAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLE  269 (371)
T ss_dssp             TSTTSSST--EEEEEEEH--------HHHHHHHTSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHH
T ss_pred             cccCCCCc--hhhheehh--------hhhhccccccccccccccccchhcccccccccccccceeeehhhhHHHHHhhhh
Confidence            99655566  79999998        78877743211                     0 01345555566666666443


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCcccc---CCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcC
Q 042445          136 EEFFSKIIDILRETADKCCDRLKEIPCITCPK---KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG  212 (246)
Q Consensus       136 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~  212 (246)
                      +.-+++.+++..+..+.+.+.|++++++..+.   .+..+..+.+.++..       +.+.+...|.++||.+..|..+.
T Consensus       270 ~~g~~~i~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------~~~~~~~~L~~~~I~~~~G~~~~  342 (371)
T PF00266_consen  270 EIGIERIRERIRELAEYLREALEELPGIEVLGPDDEPRRPSIVSFNLPGS-------DADDVVKYLEERGIAVSTGSACA  342 (371)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTTEEESSSSCGGBGTTEEEEEETTS-------SHHHHHHHHHHHTEEEEESTTTC
T ss_pred             ccccccchhhhhhHHHHHHhhhhcCCceeEeeecccccccceEEEeecCC-------CHHHHHHHHhhcCEEEeccCccc
Confidence            55678888888999999999999988766322   122344455556432       45666777878899999988776


Q ss_pred             --------CCCeEEEEeec--ChHHHHH
Q 042445          213 --------LKDWLRITFAV--EPSALEN  230 (246)
Q Consensus       213 --------~~~~iRls~~~--~~~~l~~  230 (246)
                              ..+.+|+|+..  +.+++++
T Consensus       343 ~~~~~~~~~~~~iRvS~~~~nt~~dv~~  370 (371)
T PF00266_consen  343 GPSLDILGMGGVIRVSLHYYNTEEDVDR  370 (371)
T ss_dssp             HHHHHHHHTTTEEEEE-GTTSSHHHHHH
T ss_pred             HHHHHHhCCCCEEEEeccCCCCHHHHhh
Confidence                    25999999995  7788775

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.56  E-value=5e-13  Score=114.81  Aligned_cols=194  Identities=13%  Similarity=0.103  Sum_probs=129.7

Q ss_pred             CCcc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCC-ceEEEEEeeCC
Q 042445           19 HVGS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPG-LRLGWLVTSDP   96 (246)
Q Consensus        19 PtG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g-~r~G~i~~~~~   96 (246)
                      -.|. .++.+.+++|.++|++||+++|.||++.++...|..+ .....+-...++   +++|.+ ..| ..+|++++++ 
T Consensus       213 ~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~~~-a~~~~gv~PDi~---t~gK~l-~gG~~p~~av~~~~-  286 (422)
T PRK05630        213 AGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELF-ATLAAGVTPDIM---CVGKAL-TGGFMSFAATLCTD-  286 (422)
T ss_pred             cCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCchhh-HHHhcCCCCCee---eeechh-hcCccccceeeccH-
Confidence            3455 4667899999999999999999999998886655432 222222222223   789996 346 5889999998 


Q ss_pred             CCCcchhhHHHHHHHH-------hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc---CCCCccc
Q 042445           97 NGILQDSGIVDSIKIF-------LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKE---IPCITCP  166 (246)
Q Consensus        97 ~~~~~~~~~~~~l~~~-------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~---~~~~~~~  166 (246)
                             ++.+.+...       +..+++.||+..+++.+.|+.-.+.   ...+.++++.+.+.+.|++   .+.+.. 
T Consensus       287 -------~i~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~~l~~~---~~~~~~~~~g~~l~~~L~~l~~~~~v~~-  355 (422)
T PRK05630        287 -------KVAQLISTPNGGGALMHGPTFMANPLACAVAHASLEIIETG---MWRKQVKRIEAELIAGLSPLAHLPGVAD-  355 (422)
T ss_pred             -------HHHHHHhccCCCCccccCCCCcCCHHHHHHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHhhcCCCeee-
Confidence                   888877531       2345578999999999988743322   1233444444555554543   333321 


Q ss_pred             cCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHH
Q 042445          167 KKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDR  241 (246)
Q Consensus       167 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~  241 (246)
                      +. .-|+++-+++....      +...+...+.++||.+.+.     .+.+||....  +++++++++++|.++++.
T Consensus       356 vR-g~Gl~~~ie~~~~~------~~~~~~~~~~~~Gl~~~~~-----g~~l~~~PpL~it~~~i~~~~~~l~~al~~  420 (422)
T PRK05630        356 VR-VLGAIGVVEMEQPV------DMEEATQAAVDHGVWLRPF-----GRLVYVMPPYITTSEQIAQICAALAAAVKA  420 (422)
T ss_pred             ee-ccccEEEEEECCcc------cHHHHHHHHHHCCeEEEec-----CCEEEEECCccCCHHHHHHHHHHHHHHHhc
Confidence            12 23677777775321      2345566788899998763     2688998774  999999999999999864

>PRK06105 aminotransferase; Provisional

Probab=99.55  E-value=5.7e-13  Score=115.67  Aligned_cols=202  Identities=17%  Similarity=0.131  Sum_probs=133.0

Q ss_pred             cc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCCC
Q 042445           21 GS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGI   99 (246)
Q Consensus        21 G~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~   99 (246)
                      |. .++++++++|.++|++||+++|.||++.++...|..+. ...++-...   +.+++|.++...+.+|.+++++    
T Consensus       232 G~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~~f~-~~~~~v~PD---i~~~gK~lggG~~P~~av~~~~----  303 (460)
T PRK06105        232 GVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGNMFG-CETFGIKPD---ILVMSKQLSSSYQPLSAVLMNE----  303 (460)
T ss_pred             CCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCchhhh-HHhcCCCCC---eeeeecccccCcccceEEEEcH----
Confidence            44 46889999999999999999999999998876664432 222222212   5578999765447899999998    


Q ss_pred             cchhhHHHHHHHH--------hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhh---cCCCCccccC
Q 042445          100 LQDSGIVDSIKIF--------LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLK---EIPCITCPKK  168 (246)
Q Consensus       100 ~~~~~~~~~l~~~--------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~---~~~~~~~~~~  168 (246)
                          ++.+.+...        +..+++.||++.+++.+.|+...+.   ...+..++.-+.+.+.|+   +.+.+.. +.
T Consensus       304 ----~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~~~---~l~~~v~~~g~~l~~~L~~l~~~~~v~~-vr  375 (460)
T PRK06105        304 ----KVYDPIADESGKIGTFGHGFTASGHPVAAAVALENLAIIEER---DLVGNAAERGARLQARLRALADHPLVGE-VR  375 (460)
T ss_pred             ----HHHHHHhcccccCcccccCCCCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHhhcCCCeEE-EE
Confidence                888877542        2345588999999998888753322   223333444444444443   3433321 22


Q ss_pred             CCCceEEEEEeccccc--cCCCC---hHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHH
Q 042445          169 PEGSMFVMVKLNYSLL--EGINS---DMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDR  241 (246)
Q Consensus       169 ~~~g~~~~~~~~~~~~--~~~~~---~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~  241 (246)
                       .-|++.-+++.....  .....   ....+...+.++||.+.|.     .+.+||+...  ++++++++++++.+++++
T Consensus       376 -G~Gl~~gie~~~~~~~~~~~~~~~~~a~~i~~~~~~~Gvl~~~~-----g~~i~l~Ppl~it~~eid~~~~~l~~~l~~  449 (460)
T PRK06105        376 -GVGLIAAVELVADKATKTPFEPPGKVGARANAAAHEHGVISRAM-----GDTLAFCPPLIITAAQVDEMVDRFGRALDD  449 (460)
T ss_pred             -ecceEEEEEEecCcccCCCCCchhHHHHHHHHHHHHCCeEEEec-----CCEEEEECCCccCHHHHHHHHHHHHHHHHH
Confidence             336666677743210  00000   1234556677899999873     2579999774  999999999999999987


Q ss_pred             Hhh
Q 042445          242 HAE  244 (246)
Q Consensus       242 ~~~  244 (246)
                      ..+
T Consensus       450 ~~~  452 (460)
T PRK06105        450 VAA  452 (460)
T ss_pred             HHH
Confidence            654

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=99.54  E-value=9.3e-13  Score=113.79  Aligned_cols=199  Identities=16%  Similarity=0.127  Sum_probs=128.3

Q ss_pred             cc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCCC
Q 042445           21 GS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGI   99 (246)
Q Consensus        21 G~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~   99 (246)
                      |. ..+.+++++|.++|++||+++|+||++.++...|..+ ....++-...   +-+++|.++...+.+|.+++++    
T Consensus       229 G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~~~-a~~~~gv~PD---ivt~gK~l~gG~~P~gav~~~~----  300 (442)
T PRK13360        229 GVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPF-AAQYFGVTPD---LLTCAKGLTNGAIPMGAVFVSS----  300 (442)
T ss_pred             CCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccch-hhhhcCCCCc---eeeeeeccccCccceEEEEEcH----
Confidence            44 3577899999999999999999999998886655433 2222222112   3478999755338999999988    


Q ss_pred             cchhhHHHHHHHH--------hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcC---CCCccccC
Q 042445          100 LQDSGIVDSIKIF--------LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEI---PCITCPKK  168 (246)
Q Consensus       100 ~~~~~~~~~l~~~--------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~~~~~~  168 (246)
                          ++.+.+...        ...+++.+|++.+++.+.|+...+.   ...+..+++-+++.+.|+++   +.+.. +.
T Consensus       301 ----~i~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~L~~l~~~---~l~~~~~~~g~~l~~~l~~l~~~~~v~~-vr  372 (442)
T PRK13360        301 ----EIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALATLDLYERE---GLLTRAARLAPYWEDALHSLRDAPHVID-IR  372 (442)
T ss_pred             ----HHHHHhhcCCccccccccCCCCCCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHhhcCCCeee-ee
Confidence                888776531        2345578999999999988743222   23344455555566666543   22221 11


Q ss_pred             CCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHHHHHH
Q 042445          169 PEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       169 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~~~~  242 (246)
                       .-|++.-+.+..... +.......+...+.++||.+.++     .+.+||+..  .+++++++++++|.+++++.
T Consensus       373 -G~Gl~~~~~l~~~~~-~~~~~~~~~~~~l~~~Gvl~~~~-----~~~lr~~Ppl~~t~~eid~~~~~l~~~l~~~  441 (442)
T PRK13360        373 -NLGLVGAVELAPRDG-KPGKRAYEVFLKCFEKGLMIRYT-----GDILALSPPLIIEEAQIDELFDILAQALKET  441 (442)
T ss_pred             -ccceEEEEEEecCCC-CcchhHHHHHHHHHHCCcEEEec-----CCEEEEeCCCccCHHHHHHHHHHHHHHHHHh
Confidence             224444455532110 11012233445567899998763     357999966  49999999999999998753

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=99.54  E-value=7.8e-13  Score=113.90  Aligned_cols=196  Identities=11%  Similarity=0.034  Sum_probs=126.6

Q ss_pred             cc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCC-ceEEEEEeeCCCC
Q 042445           21 GS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPG-LRLGWLVTSDPNG   98 (246)
Q Consensus        21 G~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g-~r~G~i~~~~~~~   98 (246)
                      |. ..++++++++.++|++||+++|.||++.++...|..+ ....++-...   +-+++|.++ .| +.+|.+++++   
T Consensus       238 G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~-a~e~~gv~PD---ivt~gK~lg-~G~~Pigavv~~~---  309 (442)
T TIGR03372       238 GVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMF-ACEHEGVQPD---ILCLAKALG-GGVMPIGATIATE---  309 (442)
T ss_pred             CcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccccch-hhhhcCCCCC---eeeehhhhc-CCcccceEEEecH---
Confidence            44 4567899999999999999999999999876665432 2222222222   345899975 57 6899999987   


Q ss_pred             CcchhhHHHHHHHH---hhhcCCCCchHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHHHHHhhcCC-CCccccCCCCce
Q 042445           99 ILQDSGIVDSIKIF---LNISSDPATFIQGAVPQILEKTEE-EFFSKIIDILRETADKCCDRLKEIP-CITCPKKPEGSM  173 (246)
Q Consensus        99 ~~~~~~~~~~l~~~---~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~g~  173 (246)
                           ++.+.+...   ...+++.||++.+++.+.|+...+ ...++.++.-...++.+.+..++.| .+.. + ..-|.
T Consensus       310 -----~i~~~~~~~~~~~~~T~~gnp~~~Aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l~~~~~~~i~~-v-RG~Gl  382 (442)
T TIGR03372       310 -----AVFSVLFDNPFLHTTTFGGNPLACAAALATINELLEKNLPAQAAIKGDFLLDGFQQLAAEYPDLIIE-A-RGKGL  382 (442)
T ss_pred             -----HHHHhhhccCccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCceEE-E-ecceE
Confidence                 888877422   234557799999999999885332 2223222222222333333223344 2222 1 23477


Q ss_pred             EEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHH
Q 042445          174 FVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFY  239 (246)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~  239 (246)
                      ++.+.+....      ....+...+.++||++.+...  ..+.+||++..  +++++++++++|.+++
T Consensus       383 ~~giel~~~~------~~~~i~~~l~~~Gvl~~~~~~--~~~~lr~~Ppl~~t~~~id~~~~~l~~~~  442 (442)
T TIGR03372       383 LMAIEFRDNE------IGYAFAKELFQQNILVAGTLN--NAKSIRIEPPLTITIEQCALVIKAAKDAL  442 (442)
T ss_pred             EEEEEeCChH------HHHHHHHHHHHCCcEEeecCC--CCCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence            7777776431      334455567789999875321  25789999884  9999999999998763

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]

Probab=99.54  E-value=6.7e-13  Score=104.42  Aligned_cols=198  Identities=14%  Similarity=0.098  Sum_probs=121.8

Q ss_pred             CccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEcccccccc-cCCceEEEEEeeCCC
Q 042445           20 VGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGSISKRGI-VPGLRLGWLVTSDPN   97 (246)
Q Consensus        20 tG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~-~~g~r~G~i~~~~~~   97 (246)
                      -|.+.|   +++|.+++++||+++++||+|+.+.++..+-.+...++- .+..++.++++|++| +.|   ||..+|.  
T Consensus       206 DGdiaP---l~ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~E~~~vm~~vdiinsTLgKAlGga~G---Gyttgp~--  277 (417)
T KOG1359|consen  206 DGDIAP---LEEISQLAKKYGALLFIDECHATGFFGETGRGTAEEFGVMGDVDIINSTLGKALGGASG---GYTTGPK--  277 (417)
T ss_pred             CCCccc---HHHHHHHHHhcCcEEEEeecccceeecCCCCChHHHhCCCCcceehhhhhhhhhcCCCC---CCccCCh--
Confidence            455555   889999999999999999999988887655444444432 234589999999988 567   9999999  


Q ss_pred             CCcchhhHHHHHHHH-hhh--cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceE
Q 042445           98 GILQDSGIVDSIKIF-LNI--SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMF  174 (246)
Q Consensus        98 ~~~~~~~~~~~l~~~-~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~  174 (246)
                            .++..+++. +++  ..+.+|.....+..++.-  .-.-.+.....+.+.+++++..+.. |+.. .. ..-..
T Consensus       278 ------~li~llrqr~RpylFSnslppavV~~a~ka~dl--lm~s~~~i~~~~a~~qrfr~~me~a-GftI-sg-~~hPI  346 (417)
T KOG1359|consen  278 ------PLISLLRQRSRPYLFSNSLPPAVVGMAAKAYDL--LMVSSKEIQSRQANTQRFREFMEAA-GFTI-SG-ASHPI  346 (417)
T ss_pred             ------hHHHHHHhcCCceeecCCCChhhhhhhHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHhc-Ccee-cC-CCCCc
Confidence                  999988876 332  213343333333444431  0011112222344555566665554 5542 11 11111


Q ss_pred             EEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC---CCeEEEEeec--ChHHHHHHHHHHHHHHHHH
Q 042445          175 VMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFAV--EPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~iRls~~~--~~~~l~~~~~~l~~~~~~~  242 (246)
                      .-+-+.+..+     ..+...+ +.+.||.|..-++.-.   .-.+|+.++.  +++++++.++.+.++.+.+
T Consensus       347 ~pv~lGda~l-----A~~~ad~-lLk~Gi~Vigfs~PvVP~gkariRVqiSAaHt~edid~~i~Af~~vgr~~  413 (417)
T KOG1359|consen  347 CPVMLGDARL-----ASKMADE-LLKRGIYVIGFSYPVVPKGKARIRVQISAAHTEEDIDRLIEAFSEVGRFL  413 (417)
T ss_pred             cceecccHHH-----HHHHHHH-HHhcCceEEeecCCcCCCCceEEEEEEehhcCHHHHHHHHHHHHHHHHhh
Confidence            1122333321     4455454 5578999875333222   4578888884  8999999999999887654

>PRK05965 hypothetical protein; Provisional

Probab=99.54  E-value=8.7e-13  Score=114.49  Aligned_cols=202  Identities=13%  Similarity=0.116  Sum_probs=132.0

Q ss_pred             Ccc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCC-ceEEEEEeeCCC
Q 042445           20 VGS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPG-LRLGWLVTSDPN   97 (246)
Q Consensus        20 tG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g-~r~G~i~~~~~~   97 (246)
                      .|. ++|.+++++|.++|++||+++|.||+..+|...|..+ ....++-...   +-+++|.+ ..| +.+|.+++++  
T Consensus       228 gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~~-a~~~~gv~PD---iv~~gKgl-~gG~~Pi~av~~~~--  300 (459)
T PRK05965        228 GGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGPLF-ACEAEGVVPD---LMTVAKGL-TSGYVPMGAVLMSD--  300 (459)
T ss_pred             CCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCchhh-hHhhcCCCCC---eEEechhh-ccCCcceeEEEEcH--
Confidence            344 5677999999999999999999999999997776433 2222332222   44568996 457 5999999998  


Q ss_pred             CCcchhhHHHHHHH--------HhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc---CCCCccc
Q 042445           98 GILQDSGIVDSIKI--------FLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKE---IPCITCP  166 (246)
Q Consensus        98 ~~~~~~~~~~~l~~--------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~---~~~~~~~  166 (246)
                            ++.+.+..        ....+++.||++.+++.+.|+...+..   ..+..++.-+.+.+.|++   .|.+.. 
T Consensus       301 ------~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~l~~~~---l~~~~~~~g~~l~~~l~~l~~~~~v~~-  370 (459)
T PRK05965        301 ------HVYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLRLYHEGG---LLANGQKAGPRFAAGLDALRAHPLVGD-  370 (459)
T ss_pred             ------HHHHHHhccccccccccccCCCCCCHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHhhccCCCEEE-
Confidence                  88877642        133456889999999999887433221   222233333444444433   433321 


Q ss_pred             cCCCCceEEEEEeccccc--cCCC---ChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHHH
Q 042445          167 KKPEGSMFVMVKLNYSLL--EGIN---SDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAFY  239 (246)
Q Consensus       167 ~~~~~g~~~~~~~~~~~~--~~~~---~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~  239 (246)
                       ...-|+++-+++....-  ....   .....+...+.++||.+.+..    .+.+|++..  .+++++++++++|.+++
T Consensus       371 -vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gll~~~~g----~~~i~~~PpL~it~~ei~~~~~~l~~~l  445 (459)
T PRK05965        371 -VRGRGLLGALELVADKATKTPFDAALDPADRIFDRAYANGLVFRAFG----DGVLGFAPALCCTEGEFDLIFERTRKTL  445 (459)
T ss_pred             -EeecceEEEEEEeccccccCCCCchhHHHHHHHHHHHhCCeEEEecC----CcEEEEECCCcCCHHHHHHHHHHHHHHH
Confidence             22346666677743210  0000   113445666779999997632    467899866  39999999999999999


Q ss_pred             HHHh
Q 042445          240 DRHA  243 (246)
Q Consensus       240 ~~~~  243 (246)
                      ++..
T Consensus       446 ~~~~  449 (459)
T PRK05965        446 DDVL  449 (459)
T ss_pred             HHHh
Confidence            8754

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=99.54  E-value=9.7e-13  Score=114.02  Aligned_cols=202  Identities=17%  Similarity=0.125  Sum_probs=128.4

Q ss_pred             cc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCCC
Q 042445           21 GS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGI   99 (246)
Q Consensus        21 G~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~   99 (246)
                      |. .++.+++++|.++|++||+++|.||++.++...|..+.. ..++-...+++   ++|.++ .|+.+|.+++++    
T Consensus       236 G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~-~~~gv~PDiv~---~gK~l~-gG~pi~av~~~~----  306 (457)
T PRK05639        236 GIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGKWFAS-EWFEVKPDLII---FGKGVA-SGMGLSGVIGRK----  306 (457)
T ss_pred             CCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCchHHHH-HhcCCCCCEEE---echhhc-CCCcceeEEehH----
Confidence            44 567899999999999999999999999987666543221 22222223333   799964 579999999988    


Q ss_pred             cchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHHHHHhhc----CCCCccccCCCCceE
Q 042445          100 LQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEE-EFFSKIIDILRETADKCCDRLKE----IPCITCPKKPEGSMF  174 (246)
Q Consensus       100 ~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~g~~  174 (246)
                          ++.+........+++.||+..+++.+.|+...+ ..+++.+    ++-+++.+.|++    .+-+..  ...-|.+
T Consensus       307 ----~i~~~~~~~~~~T~~g~p~~~aaa~a~l~~l~~~~l~~~~~----~~g~~l~~~L~~l~~~~~~~~~--VrG~Gl~  376 (457)
T PRK05639        307 ----ELMDLTSGSALLTPAANPVISAAAEATLEIIEEENLLKNAL----KVGEFIKKRLLEMKESFEVIGD--VRGKGLM  376 (457)
T ss_pred             ----HHHhhcCCCcccCCCcCHHHHHHHHHHHHHHHHccHHHHHH----HHHHHHHHHHHHHHHhCCCEEe--eccceeE
Confidence                777732212224557899999988888874332 2233333    333444444433    432221  2233666


Q ss_pred             EEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHHh
Q 042445          175 VMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~~  243 (246)
                      +.+.+......+.......+...+.++|+.+.+...  .++.+||+...  +++++++++++|.+++++..
T Consensus       377 ~gve~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~g~--~~~~lr~~Ppl~it~~~id~~~~~l~~~l~~~~  445 (457)
T PRK05639        377 IGVEIVKENGKPDPELTGKICWRAFELGLILPSYGM--FGNVIRITPPLVITKEIAEKGLEIMERAIKDAL  445 (457)
T ss_pred             EEEEEecCCCCCCHHHHHHHHHHHHhCCeEEeecCC--CCCEEEEeCCCccCHHHHHHHHHHHHHHHHHHH
Confidence            666664321000001234455667789999876421  15789999884  99999999999999987653

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.54  E-value=1.3e-12  Score=112.32  Aligned_cols=197  Identities=13%  Similarity=0.118  Sum_probs=132.6

Q ss_pred             CccC-CChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCC-ceEEEEEeeCCC
Q 042445           20 VGSG-FSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPG-LRLGWLVTSDPN   97 (246)
Q Consensus        20 tG~~-~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g-~r~G~i~~~~~~   97 (246)
                      .|.. ++++++++|.++|++||+++|+||++.++...|..+. ...++-...++   +++|.++ .| +.+|.+++++  
T Consensus       220 gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a-~~~~gv~PDiv---~~gK~l~-gG~~p~~a~~~~~--  292 (429)
T PRK06173        220 GGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKLFA-LEHAGVVPDIM---CIGKALT-GGYLTLSATITTE--  292 (429)
T ss_pred             CCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCCcchH-HHhcCCCCCEE---Eeehhhh-CCccccceEEecH--
Confidence            3554 7889999999999999999999999988755554331 11222222223   4899974 56 5788899888  


Q ss_pred             CCcchhhHHHHHHH------HhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccC-CC
Q 042445           98 GILQDSGIVDSIKI------FLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKK-PE  170 (246)
Q Consensus        98 ~~~~~~~~~~~l~~------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~  170 (246)
                            ++.+.+..      ....+++.+|++.+++.+.|+...+.   ...+..+++-+.+.+.|+++.+...+.. -.
T Consensus       293 ------~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~~~~~~~v~~vRg  363 (429)
T PRK06173        293 ------AIAQTICSGEAKCFMHGPTFMANPLACAIAAESIRLLLES---PWQQNIQRIEAQLKQELAPAAEFDSVAEVRV  363 (429)
T ss_pred             ------HHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHhhcCCCeeeeec
Confidence                  88887743      12234467899999999888743221   2355566666667776664322211111 12


Q ss_pred             CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHHh
Q 042445          171 GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       171 ~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~~  243 (246)
                      -|+.+-+.+....      ....+...+.++||.+.+..     +.+||....  +++++++++++|.+++.+..
T Consensus       364 ~Gl~~~iel~~~~------~~~~i~~~l~e~Gi~v~~~g-----~~l~~~Ppl~it~~ei~~~~~~l~~~l~~~~  427 (429)
T PRK06173        364 LGAIGVVEMKEPV------NMATLQPRFVEHGIWVRPFG-----KLVYIMPPFIISPDELSQLTSGLLRVLKQEY  427 (429)
T ss_pred             cceEEEEEeCCcc------cHHHHHHHHHHCCeEEEecC-----CEEEEeCCccCCHHHHHHHHHHHHHHHHHHh
Confidence            3666667675431      33455667888999997742     589999874  99999999999999998754

>KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism]

Probab=99.53  E-value=2.3e-14  Score=114.66  Aligned_cols=203  Identities=19%  Similarity=0.178  Sum_probs=147.1

Q ss_pred             CCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCC--CCcccccc-CCcccEEEEcccccccccCCceEEEE
Q 042445           15 FQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNT--PFVSMGVF-GSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        15 ~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~--~~~~~~~~-~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      ..|||||+..+.++|++|.++.++.+.+-+.|-+|.+|..+.-  ...++..+ ....++++..|++|-+|+.|-|+|.+
T Consensus       206 CaHNPTGvDPt~eqw~ki~~~~~~k~~~pffDmAYQGfaSG~~d~DA~avR~F~~~g~~~~laQSyAKNMGLYgERvGa~  285 (427)
T KOG1411|consen  206 CAHNPTGVDPTKEQWEKISDLIKEKNLLPFFDMAYQGFASGDLDKDAQAVRLFVEDGHEILLAQSYAKNMGLYGERVGAL  285 (427)
T ss_pred             hhcCCCCCCccHHHHHHHHHHhhhccccchhhhhhcccccCCchhhHHHHHHHHHcCCceEeehhhhhhcchhhhcccee
Confidence            4489999999999999999999999999999999999987642  22233333 33457899999999999999999994


Q ss_pred             --EeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhch--HHH---HHHHHHHHHHHHHHHHHHhhc--CC
Q 042445           92 --VTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTE--EEF---FSKIIDILRETADKCCDRLKE--IP  161 (246)
Q Consensus        92 --~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~--~~~---~~~~~~~~~~~~~~l~~~L~~--~~  161 (246)
                        ++.+++...   .+-..++.. ++++++++.-+...+..+|++.+  ..|   +.-..+++...|+.+.+.|+.  .+
T Consensus       286 svvc~~ad~A~---rV~SQlk~liRpmYSnPP~hGArIv~~Il~d~~l~~~W~~evk~MadRi~~mR~~L~d~L~~~gs~  362 (427)
T KOG1411|consen  286 SVVCKDADEAK---RVESQLKILIRPMYSNPPLHGARIVATILSDPDLKNQWLGEVKGMADRIISMRQQLFDALEKEGSP  362 (427)
T ss_pred             EEEecCHHHHH---HHHHHHHHHhcccccCCCccchhhhhhccCChHHHHHHHHHHHHHHHhhhhhHHHHhHHhhcCCCC
Confidence              666642111   233344444 55677788888888889998765  233   556667778888888888876  33


Q ss_pred             CCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec-ChHHHHHHHHHHHHH
Q 042445          162 CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV-EPSALENGLGRMKAF  238 (246)
Q Consensus       162 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~-~~~~l~~~~~~l~~~  238 (246)
                      +-+....-+-|||.+-.+          +.+++..+.+++.|+..--.        |+|++- +...+....+.|.+.
T Consensus       363 ~~W~hI~~QIGMF~fTgl----------~peQv~~l~ke~~iYmT~dG--------RiS~aG~ss~nV~yLa~aih~v  422 (427)
T KOG1411|consen  363 GNWSHITKQIGMFCFTGL----------NPEQVDWLTKEYHIYLTKDG--------RISMAGLSSSNVPYLADAIHAV  422 (427)
T ss_pred             ccHHHHHHhhheeeecCC----------CHHHHHHHHhhheeeeccCc--------eEeeccccccCCcccchhhHhH
Confidence            433344556799988655          45777888999999886533        899884 555555555555544

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=99.53  E-value=1.2e-12  Score=113.55  Aligned_cols=204  Identities=14%  Similarity=0.110  Sum_probs=130.6

Q ss_pred             CccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCCC
Q 042445           20 VGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGI   99 (246)
Q Consensus        20 tG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~   99 (246)
                      .+.+++.+++++|.++|++||+++|.||+++++...|..+. ...++-...++   +++|.++...+.+|.+++++    
T Consensus       242 g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~fa-~e~~gv~PDiv---~~gKgl~gG~~P~~av~~~~----  313 (459)
T PRK06082        242 DVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFT-HQAYGIEPDIL---CIGKGLGGGLVPIAAMITKD----  313 (459)
T ss_pred             CCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhH-hHhhCCCCCEE---EecccccCCCCcceEEEEcH----
Confidence            35577889999999999999999999999998866664332 22222222333   38999764336999999987    


Q ss_pred             cchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc----CCCCccccCCCCceE
Q 042445          100 LQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKE----IPCITCPKKPEGSMF  174 (246)
Q Consensus       100 ~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~g~~  174 (246)
                          ++....... ...+++.||++.+++.+.|+.-.+.   ...+..+++-+++.+.|++    .+.+.. +. .-|.+
T Consensus       314 ----~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~i~~-vr-G~Gl~  384 (459)
T PRK06082        314 ----KYNTAAQISLGHYTHEKSPLGCAAALATIEVIEQE---GLLEKVKADSQFMRERLLEMKAKYPLIGD-VR-GIGLL  384 (459)
T ss_pred             ----HHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHhhCCCeee-ee-eccce
Confidence                655433211 1145588999999998888743221   2334444444555555543    432221 22 33666


Q ss_pred             EEEEeccccc-c-CCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHHhh
Q 042445          175 VMVKLNYSLL-E-GINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDRHAE  244 (246)
Q Consensus       175 ~~~~~~~~~~-~-~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~~~  244 (246)
                      +.+++....- . ........+...+.++||.+.+..    .+.+|++...  ++++++++++++.+++.+..+
T Consensus       385 ~~ve~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~----~~~i~~~Ppl~it~~eid~~~~~l~~~l~~~~~  454 (459)
T PRK06082        385 WGVELVTDRHTKERAYDEAEAVLYRCLNNGLSFKVSQ----GNVIQLSPPLIITREELTQALAILEEAIAKICQ  454 (459)
T ss_pred             eEEEEccCccccCccHHHHHHHHHHHHhCCCEEEecC----CCEEEEeCCCccCHHHHHHHHHHHHHHHHHHhh
Confidence            6677743210 0 000112344556678999987742    4789999764  999999999999999987654

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=99.53  E-value=1.3e-12  Score=112.92  Aligned_cols=200  Identities=16%  Similarity=0.151  Sum_probs=131.4

Q ss_pred             Ccc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCC
Q 042445           20 VGS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNG   98 (246)
Q Consensus        20 tG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~   98 (246)
                      .|. ..+.+++++|.++|++||+++|.||+++++...|..+ ....++-...   +.++||.++...+.+|.+++++   
T Consensus       231 ~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~-~~~~~gv~PD---i~~~gK~l~gG~~Pi~av~~~~---  303 (445)
T PRK09221        231 AGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAAF-AAERFGVTPD---IITFAKGLTNGAIPMGAVIASD---  303 (445)
T ss_pred             CCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCchhh-HHHhcCCCCC---EEEeccccccCcccceeeEEcH---
Confidence            355 4567899999999999999999999999876665433 1122221112   4578999754447899999988   


Q ss_pred             CcchhhHHHHHHH--------HhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcC---CCCcccc
Q 042445           99 ILQDSGIVDSIKI--------FLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEI---PCITCPK  167 (246)
Q Consensus        99 ~~~~~~~~~~l~~--------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~~~~~  167 (246)
                           ++.+.+..        .+..+++.+|++.+++.+.|+...+.   ...+..++..+.+.+.|+++   +.+.. +
T Consensus       304 -----~i~~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~L~~i~~~---~l~~~~~~~g~~l~~~l~~l~~~~~v~~-v  374 (445)
T PRK09221        304 -----EIYDAFMQGPEYAIEFFHGYTYSAHPVACAAGLATLDIYREE---DLFERAAELAPYFEDAVHSLKGLPHVID-I  374 (445)
T ss_pred             -----HHHHhhccCcccccccccccCCCcCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHhhccCCCEEE-E
Confidence                 88877643        12345578999998888888743222   23455566666666666654   22221 1


Q ss_pred             CCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHHHHHH
Q 042445          168 KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       168 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~~~~  242 (246)
                      . .-|.+.-+.+..... +.......+.+.+.++||.+.++     .+.+||+..  .+++++++++++|.+++++.
T Consensus       375 r-g~Gl~~~v~~~~~~~-~~~~~~~~~~~~~~~~Gv~~~~~-----~~~lr~~Ppl~~t~~eid~~~~~l~~~l~~~  444 (445)
T PRK09221        375 R-NIGLVAGIELAPRPG-APGARGYEAFMKCFEKGLLVRYT-----GDTIALSPPLIIEKAQIDELVDALGDALRAV  444 (445)
T ss_pred             e-cCceEEEEEEecccc-cccchHHHHHHHHHHCCeEEeec-----CCEEEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence            1 235555566643211 01012234456677899998763     367999966  49999999999999999764

>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

Probab=99.53  E-value=4.3e-13  Score=113.19  Aligned_cols=206  Identities=15%  Similarity=0.084  Sum_probs=140.4

Q ss_pred             Ccc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCC
Q 042445           20 VGS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNG   98 (246)
Q Consensus        20 tG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~   98 (246)
                      +|+ ++++..++++.++|++||+++|.||+-.+|..+|+.|.+-    ..+-..-+-+++|.++..=+.+|.+++++   
T Consensus       228 gG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG~~FA~e----~~gi~PDi~~~aKGLT~GY~Pl~a~l~~~---  300 (449)
T COG0161         228 GGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGKMFACE----HAGIVPDILCLAKGLTGGYLPLSAVLTSD---  300 (449)
T ss_pred             CCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcCchhhhhh----hcCCCCCeeeecccccccchhhHhHhhhH---
Confidence            454 4566899999999999999999999999999888655332    21222235567899665558888899988   


Q ss_pred             CcchhhHHHHHHHH------hhhcCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445           99 ILQDSGIVDSIKIF------LNISSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG  171 (246)
Q Consensus        99 ~~~~~~~~~~l~~~------~~~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~  171 (246)
                           ++.+.+..-      ++.+++.||++++++.+.|+--. +.++++.++.-....+.+.+.|.+.|.+..  .-.-
T Consensus       301 -----~I~~~~~~~~~~~f~HG~TYsghPlacAaAla~L~i~e~e~l~~~~~~~~~~l~~~L~~~l~~~p~Vgd--VR~~  373 (449)
T COG0161         301 -----RIYEAFSDGDAGAFMHGHTYSGNPLACAAALANLDILEEEDLLERVAEIGAYLQAGLQAALADHPLVGD--VRGL  373 (449)
T ss_pred             -----HHHHHHhcccCCeeccCCccccCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcccCCcEEE--eecc
Confidence                 888877653      44677999999999999888533 345555554444444444444444444432  2234


Q ss_pred             ceEEEEEeccccccC--C-CChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHHhh
Q 042445          172 SMFVMVKLNYSLLEG--I-NSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDRHAE  244 (246)
Q Consensus       172 g~~~~~~~~~~~~~~--~-~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~~~  244 (246)
                      |+..-+++....-..  . ......+...+.++|++++|..     +.+=++...  +++++++.++.+.+++++...
T Consensus       374 Gli~~iElv~d~~t~~~f~~~~~~~~~~~~~e~Gl~iRp~g-----~~i~~~PPliit~~eid~l~~~l~~al~~~~~  446 (449)
T COG0161         374 GLIGAIELVADKATKTPFEARVGARVRAAALERGLLIRPLG-----DVIYLMPPLIITREEIDELVDALREALDETLA  446 (449)
T ss_pred             ceEEEEEEecccccccchhhhHHHHHHHHHHHCCeEEeecC-----CEEEEcCCccCCHHHHHHHHHHHHHHHHHHHh
Confidence            777777775442100  0 0125567788889999999963     244444443  899999999999999987653

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=99.52  E-value=1.9e-12  Score=107.22  Aligned_cols=220  Identities=16%  Similarity=0.089  Sum_probs=150.5

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      |.++++++++    .+..-||-||++.|   +++|.++|+++++++.+|-+.+..-    -+..+..++   --+..-|-
T Consensus       132 e~L~~al~~~T~LVSim~aNnE~G~IQp---I~ei~~i~k~~~i~fHvDAvQa~Gk----ipi~~~~~~---vD~ls~Sa  201 (386)
T COG1104         132 EQLEEALRPDTILVSIMHANNETGTIQP---IAEIGEICKERGILFHVDAVQAVGK----IPIDLEELG---VDLLSFSA  201 (386)
T ss_pred             HHHHHhcCCCceEEEEEecccCeeeccc---HHHHHHHHHHcCCeEEEehhhhcCc----eeccccccC---cceEEeeh
Confidence            5677888877    55677999999988   8999999999999999999887522    111222221   11444456


Q ss_pred             ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDR  156 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  156 (246)
                      .|++|..|  +|.++..+.-..-   .++..=-+..+. ....|..+..++..+++. ....++....+++..++.+.+.
T Consensus       202 HK~~GpkG--iGaLyv~~~~~~~---p~i~GGgQE~g~RsGTenv~~Ivg~~~A~~~-a~~~~~~~~~~~~~lr~~l~~~  275 (386)
T COG1104         202 HKFGGPKG--IGALYVRPGVRLE---PLIHGGGQERGLRSGTENVPGIVGFGKAAEI-AVEELEEENARLRKLRDRLEDG  275 (386)
T ss_pred             hhccCCCc--eEEEEECCCCccC---ceeccCcCCCCCCCCCccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence            69988888  7888875521110   111111111222 224566666666666663 3566777778889999999999


Q ss_pred             hhc-CCCCccccC--CCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC-------------------C
Q 042445          157 LKE-IPCITCPKK--PEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-------------------K  214 (246)
Q Consensus       157 L~~-~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-------------------~  214 (246)
                      |.+ +|++.....  +.-.+.+.+.|+.-       ..+.+...|..+||++..|+.|..                   .
T Consensus       276 l~~~~p~~~~~g~~~~rlP~~~~~~f~gv-------~gE~ll~~L~~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~  348 (386)
T COG1104         276 LLEIIPDVYLNGDDEPRLPNILNFSFPGV-------EGESLLLALDLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAH  348 (386)
T ss_pred             HHhcCCcEEEcCCcccCCCCeEEEEeCCC-------cHHHHHHhccccCeEEeccccccCCCCCccHHHHHcCCChHHhC
Confidence            987 466543212  23455666666643       556667788899999999999863                   4


Q ss_pred             CeEEEEeec--ChHHHHHHHHHHHHHHHHHhh
Q 042445          215 DWLRITFAV--EPSALENGLGRMKAFYDRHAE  244 (246)
Q Consensus       215 ~~iRls~~~--~~~~l~~~~~~l~~~~~~~~~  244 (246)
                      +.|||||+.  ++++++.+++.|.+.++++++
T Consensus       349 ~siR~S~g~~tt~eei~~~~~~l~~~i~~lr~  380 (386)
T COG1104         349 GSIRFSLGRFTTEEEIDAAAEALKEIIKRLRE  380 (386)
T ss_pred             ccEEEEcCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence            899999995  899999999999999988764

>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=99.52  E-value=2.7e-12  Score=107.56  Aligned_cols=136  Identities=15%  Similarity=0.120  Sum_probs=102.0

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCC-ceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPG-LRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g-~r~G~   90 (246)
                      ++-.|.||+-.+.+   +++|.++|+++|+++|+|++|....+..    ++ .++   --|+++|.+|.+++.+ +=.|.
T Consensus       154 ~lEtPsNP~l~v~D---I~~i~~~A~~~g~~vvVDNTfatP~~q~----PL-~~G---aDIVvhSaTKyl~GHsDvl~G~  222 (396)
T COG0626         154 FLETPSNPLLEVPD---IPAIARLAKAYGALVVVDNTFATPVLQR----PL-ELG---ADIVVHSATKYLGGHSDVLGGV  222 (396)
T ss_pred             EEeCCCCccccccc---HHHHHHHHHhcCCEEEEECCcccccccC----hh-hcC---CCEEEEeccccccCCcceeeeE
Confidence            88899999877765   9999999999999999999999766543    11 122   2299999999998866 44454


Q ss_pred             EEeeCCCCCcchhhHHHHHHHH-h-hhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccC
Q 042445           91 LVTSDPNGILQDSGIVDSIKIF-L-NISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKK  168 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~-~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~  168 (246)
                      +++++.       .+.+.+... . ..+..++|...+.+.+-++.     +.-+.++..+++..+.+.|++.|.+..+..
T Consensus       223 v~~~~~-------~~~~~~~~~~~~~~G~~l~p~dA~l~lRGlkT-----L~~Rm~~~~~nA~~IA~~L~~~p~V~~V~y  290 (396)
T COG0626         223 VLTPNE-------ELYELLFFAQRANTGAVLSPFDAWLLLRGLRT-----LALRMERHNENALKIAEFLADHPKVKKVYY  290 (396)
T ss_pred             EecChH-------HHHHHHHHHHHhhcCCCCCHHHHHHHHhccch-----HHHHHHHHHHHHHHHHHHHhcCCCeEEEEC
Confidence            554552       455554333 2 25557899998888888875     777778888999999999999888876666


Q ss_pred             CC
Q 042445          169 PE  170 (246)
Q Consensus       169 ~~  170 (246)
                      |.
T Consensus       291 Pg  292 (396)
T COG0626         291 PG  292 (396)
T ss_pred             CC
Confidence            63

>PRK12403 putative aminotransferase; Provisional

Probab=99.51  E-value=4.6e-12  Score=110.06  Aligned_cols=204  Identities=15%  Similarity=0.147  Sum_probs=129.6

Q ss_pred             cc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCC-ceEEEEEeeCCCC
Q 042445           21 GS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPG-LRLGWLVTSDPNG   98 (246)
Q Consensus        21 G~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g-~r~G~i~~~~~~~   98 (246)
                      |. ..+.+++++|.++|++||+++|.||+++++...|..+. ...++-...++   +++|.++ .| +.+|.+++++   
T Consensus       236 G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a-~e~~gv~PDiv---~~gK~lg-gG~~Piga~v~~~---  307 (460)
T PRK12403        236 GMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGEWFA-HEHFGFEPDTL---SIAKGLT-SGYVPMGGLVLSK---  307 (460)
T ss_pred             CCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhh-hhhcCCCCCeE---EEccccc-ccccceEEEEECH---
Confidence            54 45778999999999999999999999998877665432 22232222333   4899964 46 4999999987   


Q ss_pred             CcchhhHHHHHHHH-----hhhcCCCCchHHHHHHHHHhhchH-HHHHHHH-HHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445           99 ILQDSGIVDSIKIF-----LNISSDPATFIQGAVPQILEKTEE-EFFSKII-DILRETADKCCDRLKEIPCITCPKKPEG  171 (246)
Q Consensus        99 ~~~~~~~~~~l~~~-----~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~-~~~~~~~~~l~~~L~~~~~~~~~~~~~~  171 (246)
                           ++.+.+...     ...+++.||++.+++.+.|+...+ ..+++.+ +.-...++.+.+..++.+.+..  ...-
T Consensus       308 -----~i~~~~~~~~~~~~~~~T~~gnPl~~Aaala~L~~i~~~~l~~~~~~~~g~~l~~~L~~l~~~~~~i~~--vrG~  380 (460)
T PRK12403        308 -----RIAEALVEQGGVFAHGLTYSGHPVAAAVAIANLKALRDEGVVTRVKDDTGPYLQRCLREVFGDHPLVGE--VQGA  380 (460)
T ss_pred             -----HHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhcCCCEEe--Eeec
Confidence                 887777531     233557899999999999885332 2333332 2222223333333334543321  2244


Q ss_pred             ceEEEEEeccccc-c-CCCC---hHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHHhh
Q 042445          172 SMFVMVKLNYSLL-E-GINS---DMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDRHAE  244 (246)
Q Consensus       172 g~~~~~~~~~~~~-~-~~~~---~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~~~  244 (246)
                      |.++.+++..... . ....   ....+...+.++|+.+.+..     +.+|++...  ++++++++++.+.+++++..+
T Consensus       381 Gl~~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~-----~~~~l~Ppl~it~~eid~~~~~l~~al~~~~~  455 (460)
T PRK12403        381 GLVAALQFAEDKATRKRFANENDLAWRCRTIGFEEGVIIRSTL-----GRMIMAPALVAGRAEIDELVDKTRIAVDRTAR  455 (460)
T ss_pred             ceEEEEEEccCccccccccchhHHHHHHHHHHHhCCEEEEecC-----CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            6667777743210 0 0000   12223445678999997532     458898885  999999999999999988754

>PRK08297 L-lysine aminotransferase; Provisional

Probab=99.51  E-value=1.7e-12  Score=112.20  Aligned_cols=193  Identities=15%  Similarity=0.162  Sum_probs=118.8

Q ss_pred             cCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCCCcc
Q 042445           22 SGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQ  101 (246)
Q Consensus        22 ~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~  101 (246)
                      ..+|++++++|.++|++||+++|.||+++++...|..+ ....++-...   +-+++|.++     +|.+++.+      
T Consensus       241 ~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~-a~~~~gv~PD---iv~~gK~l~-----~~a~l~~~------  305 (443)
T PRK08297        241 NHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGTAW-AYQQLGVRPD---IVAFGKKTQ-----VCGIMAGR------  305 (443)
T ss_pred             cCCCHHHHHHHHHHHHHcCCEEEEechhhccCccchHH-HHHhcCCCCC---EEEeccccc-----ccceecch------
Confidence            34678999999999999999999999999887665432 2122222222   335789963     24444444      


Q ss_pred             hhhHHHHHHH------HhhhcCCCCchHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceE
Q 042445          102 DSGIVDSIKI------FLNISSDPATFIQGAVPQILEKTEE-EFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMF  174 (246)
Q Consensus       102 ~~~~~~~l~~------~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~  174 (246)
                        ++.+.+..      ....+++.||++..++.+.|+...+ ..+++.++.-+..++.+.+..++.+.+...+... |.+
T Consensus       306 --~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~vrg~-G~~  382 (443)
T PRK08297        306 --RVDEVEDNVFAVSSRINSTWGGNLVDMVRARRILEVIEEDGLVENAARQGEYLLARLEELAAEFPAVVSNVRGR-GLM  382 (443)
T ss_pred             --HHHHhhhhhccCccccCCCCCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHCCCcceeeecc-ceE
Confidence              32221111      1234557899999999988874322 2333333333333333333333344332112333 677


Q ss_pred             EEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHHHHHH
Q 042445          175 VMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~~~~  242 (246)
                      +.+++....      ....+...+.++||.+.|+.    .+.+||+++  .+++++++++++|.++++++
T Consensus       383 ~~i~~~~~~------~~~~~~~~l~~~Gvl~~~~~----~~~lr~~P~l~~t~~eid~~l~~l~~~l~~~  442 (443)
T PRK08297        383 CAFDLPTTA------DRDEVIRRLWEEGVLVLPCG----ERSIRFRPALTVTTEEIDAAIDALRRALPEV  442 (443)
T ss_pred             EEEEecCHH------HHHHHHHHHHHCCEEEecCC----CCeEEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence            777775421      23344555668999998854    467899655  48999999999999998764

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.51  E-value=1.5e-12  Score=113.05  Aligned_cols=205  Identities=16%  Similarity=0.097  Sum_probs=134.4

Q ss_pred             CCCcc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCC-ceEEEEEeeC
Q 042445           18 FHVGS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPG-LRLGWLVTSD   95 (246)
Q Consensus        18 NPtG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g-~r~G~i~~~~   95 (246)
                      .-.|. .+++++++++.++|++||+++|.||++.++...|..+ ....++-...   +-+++|.+ ..| +.+|.+++++
T Consensus       248 g~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRtG~~~-a~e~~gv~PD---iv~~gKgl-~gG~~Plaav~~~~  322 (472)
T PRK08742        248 CAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTGTLF-ACEQAGVMPD---LLCLSKGL-TGGFLPLSAVLATQ  322 (472)
T ss_pred             cCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccch-HHHhcCCCCC---EEEEcccc-cCCCCCcceeeccH
Confidence            33455 5678999999999999999999999999997776443 2222332223   44458996 456 5999999998


Q ss_pred             CCCCcchhhHHHHHHH-------HhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccC
Q 042445           96 PNGILQDSGIVDSIKI-------FLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKK  168 (246)
Q Consensus        96 ~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~  168 (246)
                              ++.+.+..       ....+++.||++.+++.+.|+.-.+..+.+..+...+....+.+.+++.+.+.. +.
T Consensus       323 --------ei~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~i~~~~l~~~~~~~g~~l~~~~~~~~~~~~i~d-vR  393 (472)
T PRK08742        323 --------QLYDAFLDDSRERAFLHSHSYTGNPLACAAALATLDIFADDDVIARNQPTAARMTQLAAQIGEHPHVAD-VR  393 (472)
T ss_pred             --------HHHHHhhccCccCccCcCCCCCccHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcCCCeee-Ee
Confidence                    88776642       123455789999999999988544333333333333333344445555554432 22


Q ss_pred             CCCceEEEEEeccccc--cCCCCh---HHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHH
Q 042445          169 PEGSMFVMVKLNYSLL--EGINSD---MEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDR  241 (246)
Q Consensus       169 ~~~g~~~~~~~~~~~~--~~~~~~---~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~  241 (246)
                       .-|+++-+++....-  .....+   ...+.+.+.++||.+.+.     .+.|||....  +++++++++++|.+++++
T Consensus       394 -G~Gl~~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~-----g~vi~~~PpL~it~~ei~~~~~~l~~~l~~  467 (472)
T PRK08742        394 -QAGMVVAFELTRGGNKRTPFPPAARVGLHAYRAALARGVVLRPL-----GDVLYWMPPYCVDEAQLALLADTTRHAIDE  467 (472)
T ss_pred             -ccceEEEEEeccCccccccCCchhHHHHHHHHHHHHCCeEEEec-----CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence             346777777743210  000001   134455677899999873     2689998774  999999999999999976


Q ss_pred             H
Q 042445          242 H  242 (246)
Q Consensus       242 ~  242 (246)
                      .
T Consensus       468 ~  468 (472)
T PRK08742        468 A  468 (472)
T ss_pred             H
Confidence            4

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.51  E-value=3.7e-12  Score=110.36  Aligned_cols=199  Identities=14%  Similarity=0.091  Sum_probs=130.9

Q ss_pred             Ccc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCC-ceEEEEEeeCCC
Q 042445           20 VGS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPG-LRLGWLVTSDPN   97 (246)
Q Consensus        20 tG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g-~r~G~i~~~~~~   97 (246)
                      .|. .++.++++++.++|++||+++|.||++.++...|..+ ....++-...   +-+++|.++ .| +.+|.+++++  
T Consensus       235 gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~~f-a~~~~gv~PD---ivt~gKgl~-gG~~Pi~av~~~~--  307 (453)
T PRK06943        235 AGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTFF-ACEQAGVWPD---FLCLSKGIS-GGYLPLSLVLSRD--  307 (453)
T ss_pred             CCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcchh-HHHhCCCCCC---eEeeehhhc-cCcccceEEEEcH--
Confidence            454 5688999999999999999999999999987666433 2222332223   444589965 57 6999999998  


Q ss_pred             CCcchhhHHHHHHHH-------hhhcCCCCchHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHHHHHhh---cCCCCccc
Q 042445           98 GILQDSGIVDSIKIF-------LNISSDPATFIQGAVPQILEKTEE-EFFSKIIDILRETADKCCDRLK---EIPCITCP  166 (246)
Q Consensus        98 ~~~~~~~~~~~l~~~-------~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~---~~~~~~~~  166 (246)
                            ++.+.+...       ...+++.||++.+++.+.|+...+ +.+++.+    +.-+.+.+.|+   +.+.+.. 
T Consensus       308 ------ei~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~~----~~G~~l~~~L~~l~~~~~v~~-  376 (453)
T PRK06943        308 ------AIFAAFYDDDVTRGFLHSHSYTGNPLACRAALATLDLFAEDDVLARNA----RKSARLRAALAPLAAHPQVRH-  376 (453)
T ss_pred             ------HHHHhhcccCccCCccCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHH----HHHHHHHHHHHHHhcCCCEEe-
Confidence                  888776521       333557899999999999885433 2233333    33333333333   3444432 


Q ss_pred             cCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHHHHHHh
Q 042445          167 KKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       167 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~~~~~  243 (246)
                      +. .-|+++-+++....- ........+...+.++||.+.+..     +.+||+..  .+++++++++++|.+++++..
T Consensus       377 vr-G~Gl~~gvel~~~~~-~~~~~~~~i~~~~~~~Gll~~~~g-----~~l~~~Ppl~it~~eid~~~~~l~~al~~~~  448 (453)
T PRK06943        377 LR-QRGTIFAFDVALDGD-AARTFSRRFFEAALERELLLRPIG-----TTVYLMPPYVLDDDEIAWLAERTRATLDATL  448 (453)
T ss_pred             Ee-ccccEEEEEEccCCC-cchHHHHHHHHHHHHCCcEEEecC-----CEEEEeCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence            22 346666677752210 000113345566778999987632     46899955  599999999999999998754

>PRK07482 hypothetical protein; Provisional

Probab=99.50  E-value=4.2e-12  Score=110.28  Aligned_cols=206  Identities=14%  Similarity=0.047  Sum_probs=131.6

Q ss_pred             ccC-CChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCC-ceEEEEEeeCCCC
Q 042445           21 GSG-FSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPG-LRLGWLVTSDPNG   98 (246)
Q Consensus        21 G~~-~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g-~r~G~i~~~~~~~   98 (246)
                      |.. ++++++++|.++|++||+++|.||++.++...|..+. ...++-...   +-+++|.+ ..| +.+|.+++.+   
T Consensus       234 G~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a-~~~~gv~PD---iv~~gKgl-~gG~~Pi~av~~~~---  305 (461)
T PRK07482        234 GIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGSMFG-SDHYGIEPD---LITVAKGL-TSAYAPLSGSIVGE---  305 (461)
T ss_pred             CCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCcchhh-HHhcCCCCC---EEEEcccc-ccCccccceeeecH---
Confidence            554 6778999999999999999999999999977665432 223332223   33468996 456 4899999988   


Q ss_pred             CcchhhHHHHHHH--------HhhhcCCCCchHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445           99 ILQDSGIVDSIKI--------FLNISSDPATFIQGAVPQILEKTEE-EFFSKIIDILRETADKCCDRLKEIPCITCPKKP  169 (246)
Q Consensus        99 ~~~~~~~~~~l~~--------~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~  169 (246)
                           ++.+.+..        .+..+++.||++.+++.+.|+.-.+ ..++..++.-...++.+.+..++.+.+..  ..
T Consensus       306 -----~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~--vr  378 (461)
T PRK07482        306 -----KVWDVLEQGSDEHGAIGHGWTYSGHPICAAAALANLDILERENLVGNAAEVGAYFRARLRAAFGDHPLVGE--VR  378 (461)
T ss_pred             -----HHHHHHhcccccCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCEEE--Ee
Confidence                 87776652        1234558899999999999885332 23333333322233333333334443321  22


Q ss_pred             CCceEEEEEeccccc--cCCCC---hHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHHHHHH
Q 042445          170 EGSMFVMVKLNYSLL--EGINS---DMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       170 ~~g~~~~~~~~~~~~--~~~~~---~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~~~~  242 (246)
                      .-|.++-+++....-  .....   ....+...+.++||++.++.   ..+.+|+...  .++++++++++.+.+++++.
T Consensus       379 G~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~~---~~~~i~~~Ppl~it~~ei~~~~~~l~~~l~~~  455 (461)
T PRK07482        379 GVGMLAAVEFVADRDDRTPFDPALKIGPQVSAAALERGVIARAMP---HGDILGFAPPLVLTRAEADEIVAIAKDAVDEV  455 (461)
T ss_pred             eceeEEEEEeccCCCcCCCCChhhHHHHHHHHHHHHCCcEEecCC---CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            346666777753210  00000   12345566778999986532   1467899855  49999999999999999875


Q ss_pred             hh
Q 042445          243 AE  244 (246)
Q Consensus       243 ~~  244 (246)
                      .+
T Consensus       456 ~~  457 (461)
T PRK07482        456 LG  457 (461)
T ss_pred             HH
Confidence            43

>PRK07483 hypothetical protein; Provisional

Probab=99.50  E-value=1.9e-12  Score=111.87  Aligned_cols=208  Identities=17%  Similarity=0.141  Sum_probs=133.2

Q ss_pred             cCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCc-eEEEEEeeCCCCCc
Q 042445           22 SGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGL-RLGWLVTSDPNGIL  100 (246)
Q Consensus        22 ~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~-r~G~i~~~~~~~~~  100 (246)
                      ..++++++++|.++|++||+++|.||++.++...|..+ ....++-...   +-+++|.+ ..|+ .+|.+++++     
T Consensus       216 ~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~-a~~~~gv~PD---iv~~gK~l-~gG~~Pi~av~~~~-----  285 (443)
T PRK07483        216 VPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGTLF-ACEEDGVAPD---LVTIAKGL-GAGYQPIGAVLASD-----  285 (443)
T ss_pred             EeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCcHHH-HHhhcCCCCC---eeeehhhh-ccCccccEEEEEcH-----
Confidence            46678899999999999999999999999887666433 2222222222   45568996 5575 999999998     


Q ss_pred             chhhHHHHHHHH-----hhhcCCCCchHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceE
Q 042445          101 QDSGIVDSIKIF-----LNISSDPATFIQGAVPQILEKTEE-EFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMF  174 (246)
Q Consensus       101 ~~~~~~~~l~~~-----~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~  174 (246)
                         ++.+.+...     +..+++.||++.+++.+.|+...+ ..+++.++.-...++.+.+.+++.+.+.. +. .-|++
T Consensus       286 ---~i~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~l~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~-vR-G~Glm  360 (443)
T PRK07483        286 ---RIYDAIADGSGFFQHGHTYLGHATACAAALAVQRVIAEDGLLANVRARGEQLRARLRERLGQHPHVGD-IR-GRGLF  360 (443)
T ss_pred             ---HHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCCCeee-Ee-ecccE
Confidence               888877532     234557899999999999875332 23333333222233333333334443321 22 34666


Q ss_pred             EEEEecccc--ccCCC---ChHHHHHHHHHhcCeEEecCCCc--CC-CCeEEEEeec--ChHHHHHHHHHHHHHHHHHhh
Q 042445          175 VMVKLNYSL--LEGIN---SDMEFALKLAKEESVIVLPGITV--GL-KDWLRITFAV--EPSALENGLGRMKAFYDRHAE  244 (246)
Q Consensus       175 ~~~~~~~~~--~~~~~---~~~~~~~~ll~~~gi~v~pg~~f--~~-~~~iRls~~~--~~~~l~~~~~~l~~~~~~~~~  244 (246)
                      +-+++....  .....   ...+.+...+.++||++.+....  +. .+.+||....  +++++++++++|.+++.+...
T Consensus       361 ~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~~~~~~~~~~~l~~~PpL~it~~eid~~~~~l~~~l~~~~~  440 (443)
T PRK07483        361 VGVELVADRATKAPFDPALKLHARIKREAMARGLMVYPMGGTIDGVRGDHVLLAPPFIITAAQIDEIVERLGDAIDAALA  440 (443)
T ss_pred             EEEEEeecccccCCCCchhhHHHHHHHHHHHCCcEEEecCccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            666664321  00000   11244566677899999874321  11 4789998774  999999999999999987653

>PRK08114 cystathionine beta-lyase; Provisional

Probab=99.50  E-value=5.2e-12  Score=107.02  Aligned_cols=144  Identities=12%  Similarity=0.074  Sum_probs=104.7

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHc--CCEEEEccccCCcccCCCCCccccccCCcccEEEEc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKL--GIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLG   75 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~--~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~   75 (246)
                      +.+++.+.++    ++.+|+||+|.+.+   +++|+++|+++  |+++++|.+|+....-    .+. .++   --++++
T Consensus       138 ~~l~~~l~~~TrlV~~EtpsNp~~~v~D---I~~Ia~ia~~~g~g~~lvVDnT~a~p~~~----~pl-~~G---aDivv~  206 (395)
T PRK08114        138 ADIAKLIQPNTKVVFLESPGSITMEVHD---VPAIVAAVRSVNPDAVIMIDNTWAAGVLF----KAL-DFG---IDISIQ  206 (395)
T ss_pred             HHHHHhcCCCceEEEEECCCCCCCEeec---HHHHHHHHHHhCCCCEEEEECCCcccccc----CHH-HcC---CcEEEE
Confidence            4456666654    88899999999987   89999999998  4999999999853321    111 122   239999


Q ss_pred             ccccccccCC-ceEEEEEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 042445           76 SISKRGIVPG-LRLGWLVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKC  153 (246)
Q Consensus        76 s~sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l  153 (246)
                      |.+|.+++++ +-.|.++.++        +..+.++.. ...+..++|.....+.+-|+.     +.-+.++..++...+
T Consensus       207 S~tKyl~Ghsdv~~G~v~~~~--------~~~~~l~~~~~~~G~~~~p~~a~l~~rgl~T-----L~lR~~~~~~na~~v  273 (395)
T PRK08114        207 AGTKYLVGHSDAMIGTAVANA--------RCWEQLRENSYLMGQMVDADTAYMTSRGLRT-----LGVRLRQHEESSLKV  273 (395)
T ss_pred             cCcccccCCCcceeEEEEcCH--------HHHHHHHHHHHhccCCCCHHHHHHHHcCCCc-----HHHHHHHHHHHHHHH
Confidence            9999888876 6677666555        666666644 334546788888877777774     777777888999999


Q ss_pred             HHHhhcCCCCccccCC
Q 042445          154 CDRLKEIPCITCPKKP  169 (246)
Q Consensus       154 ~~~L~~~~~~~~~~~~  169 (246)
                      .+.|+++|.+..+..|
T Consensus       274 a~~L~~hp~V~~V~yP  289 (395)
T PRK08114        274 AEWLAEHPEVARVNHP  289 (395)
T ss_pred             HHHHHcCCCEeEEECC
Confidence            9999988766544444

>PRK07480 putative aminotransferase; Validated

Probab=99.50  E-value=2.6e-12  Score=111.38  Aligned_cols=204  Identities=13%  Similarity=0.119  Sum_probs=130.7

Q ss_pred             Ccc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCC-ceEEEEEeeCCC
Q 042445           20 VGS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPG-LRLGWLVTSDPN   97 (246)
Q Consensus        20 tG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g-~r~G~i~~~~~~   97 (246)
                      .|. ..+.+++++|.++|++||+++|.||++.++...|..+ ....++-...   +-+++|.++ .| +.+|.+++++  
T Consensus       232 gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~-a~~~~gv~PD---iv~~gK~l~-gG~~Pi~av~~~~--  304 (456)
T PRK07480        232 GGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGEWF-GSQHFGIKPD---LMTIAKGLT-SGYIPMGAVGVGD--  304 (456)
T ss_pred             CCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchh-hhhhcCCCCC---eeeeehhhc-cCCccceEEEEcH--
Confidence            355 4677899999999999999999999999886665433 2222322222   456789965 46 5899999988  


Q ss_pred             CCcchhhHHHHHHH-----HhhhcCCCCchHHHHHHHHHhhchH-HHHHHHH-HHHHHHHHHHHHHhhcCCCCccccCCC
Q 042445           98 GILQDSGIVDSIKI-----FLNISSDPATFIQGAVPQILEKTEE-EFFSKII-DILRETADKCCDRLKEIPCITCPKKPE  170 (246)
Q Consensus        98 ~~~~~~~~~~~l~~-----~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~-~~~~~~~~~l~~~L~~~~~~~~~~~~~  170 (246)
                            ++.+.+..     ....+++.||++.+++.+.|+...+ ..+++.+ +.-...++.+.+ +++.+.+.. +. .
T Consensus       305 ------~i~~~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~~g~~l~~~l~~-l~~~~~i~~-vr-G  375 (456)
T PRK07480        305 ------RVAEVLIEEGGEFNHGFTYSGHPVAAAVALANLRILRDEGIVERVRDDTGPYLQKRLRE-LADHPLVGE-VR-G  375 (456)
T ss_pred             ------HHHHHHhcCCCCcccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-hhcCCCeee-EE-e
Confidence                  88887732     1334668899999999999985332 2233331 221222222222 334432322 22 3


Q ss_pred             CceEEEEEeccccc--cCCCC---hHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHHh
Q 042445          171 GSMFVMVKLNYSLL--EGINS---DMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       171 ~g~~~~~~~~~~~~--~~~~~---~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~~  243 (246)
                      -|+++-+++....-  ....+   ....+...+.++||.+.+.     .+.+||+...  +++++++++++|.+++.+.+
T Consensus       376 ~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~-----~~~l~~~Ppl~it~~eid~~~~~l~~al~~~~  450 (456)
T PRK07480        376 VGLVGAIELVKDKATRERFEAGGGVGTICRDHCFANGLIMRAV-----GDRMIISPPLVITHAEIDELVEKARKALDATA  450 (456)
T ss_pred             ecceEEEEEeccccccccCcchhhHHHHHHHHHHHCCcEEeec-----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            36666677743210  00001   1234555677899998762     2679999885  99999999999999998875


Q ss_pred             h
Q 042445          244 E  244 (246)
Q Consensus       244 ~  244 (246)
                      +
T Consensus       451 ~  451 (456)
T PRK07480        451 A  451 (456)
T ss_pred             H
Confidence            4

>PRK06062 hypothetical protein; Provisional

Probab=99.49  E-value=1.9e-12  Score=112.16  Aligned_cols=198  Identities=17%  Similarity=0.200  Sum_probs=126.7

Q ss_pred             CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCC-ceEEEEEeeCCCCCcc
Q 042445           23 GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPG-LRLGWLVTSDPNGILQ  101 (246)
Q Consensus        23 ~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g-~r~G~i~~~~~~~~~~  101 (246)
                      .++.+++++|.++|++||+++|.||+++++...|..+ ....++-...   +.+++|.++ .| +.+|.+++++      
T Consensus       231 ~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~-a~~~~gv~PD---i~t~gK~lg-gG~~Pigav~~~~------  299 (451)
T PRK06062        231 VPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWF-AIEHFGVVPD---LITFAKGVN-SGYVPLGGVAISE------  299 (451)
T ss_pred             cCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcHHH-HHHhcCCCCC---eeeechhhh-cCCcCcEEEEEcH------
Confidence            4678999999999999999999999999876555432 1112221112   557899964 56 5999999998      


Q ss_pred             hhhHHHHHHHH---hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHH-HHHHHHhh----cCCCCccccCCCCce
Q 042445          102 DSGIVDSIKIF---LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETA-DKCCDRLK----EIPCITCPKKPEGSM  173 (246)
Q Consensus       102 ~~~~~~~l~~~---~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~-~~l~~~L~----~~~~~~~~~~~~~g~  173 (246)
                        ++.+.+...   ...+++.||++.+++.+.|+...+..   ..+..++.- +.+.+.|+    +.+.+.. +. .-|+
T Consensus       300 --~i~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~---l~~~~~~~G~~~l~~~L~~l~~~~~~v~~-vr-G~Gl  372 (451)
T PRK06062        300 --AIAATFADRPYPGGLTYSGHPLACAAAVATINAMEEEG---IVENAARIGAEVLGPGLRELAERHPSVGE-VR-GLGV  372 (451)
T ss_pred             --HHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHhcCCcEEe-Ee-cccc
Confidence              888877532   33456789999999999988533221   222222222 23333333    3432221 22 3356


Q ss_pred             EEEEEecccc--ccCCC------ChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHHHHHHh
Q 042445          174 FVMVKLNYSL--LEGIN------SDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       174 ~~~~~~~~~~--~~~~~------~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~~~~~  243 (246)
                      ++-+.+....  .....      .....+...+.++||.+.+.     .+.+||+..  .++++++++++++.+++++..
T Consensus       373 ~~gve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~~-----~~~lrl~ppl~~t~~eid~~~~~l~~~l~~~~  447 (451)
T PRK06062        373 FWALELVADRETREPLAPYGASSAAMAAVKAACKERGLLPFVN-----GNRIHVVPPCTVTEDEVREGLAILDAALAVAD  447 (451)
T ss_pred             EEEEEEcccccccCCCcccchhhHHHHHHHHHHHHCCcEEeec-----CCEEEEECCccCCHHHHHHHHHHHHHHHHHhh
Confidence            6666664211  00000      01335566677899988652     467999875  499999999999999998765

>PLN02651 cysteine desulfurase

Probab=99.49  E-value=7.6e-13  Score=112.04  Aligned_cols=197  Identities=14%  Similarity=0.038  Sum_probs=124.3

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.++++    ++++++||||.+.+   +++|.++|+++|+++++|.+++.....    ..+..++   --+++.|.
T Consensus       129 ~~l~~~i~~~t~lv~v~~~~n~tG~~~~---l~~I~~~~~~~g~~~~vD~a~~~g~~~----~~~~~~~---~D~~~~s~  198 (364)
T PLN02651        129 DELAAAIRPDTALVSVMAVNNEIGVIQP---VEEIGELCREKKVLFHTDAAQAVGKIP----VDVDDLG---VDLMSISG  198 (364)
T ss_pred             HHHHHhcCCCcEEEEEECCCCCceeccc---HHHHHHHHHHcCCEEEEEcchhhCCcc----cCcccCC---CCEEEech
Confidence            3456666554    77889999999988   789999999999999999999853321    1122222   23778889


Q ss_pred             ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHh--------hhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFL--------NISSDPATFIQGAVPQILEKTEEEFFSKIIDILRET  149 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~--------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~  149 (246)
                      .|.++.+  .+|+++..+        +....+....        ....+.+.....++.++++... ...++.+++.++.
T Consensus       199 hK~~gp~--G~g~l~v~~--------~~~~~l~p~~~g~~~~~~~~~GT~~~~~~~~l~~al~~~~-~~~~~i~~~~~~l  267 (364)
T PLN02651        199 HKIYGPK--GVGALYVRR--------RPRVRLEPLMSGGGQERGRRSGTENTPLVVGLGAACELAM-KEMDYDEKHMKAL  267 (364)
T ss_pred             hhhCCCC--ceEEEEEcC--------CCCCCCCccccCCCccCCccCCCccHHHHHHHHHHHHHHH-HhHHHHHHHHHHH
Confidence            9964333  488888877        2222221110        0122556666677777776422 3357777888888


Q ss_pred             HHHHHHHhhc-CCCCccccC--CC--CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC-----------
Q 042445          150 ADKCCDRLKE-IPCITCPKK--PE--GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-----------  213 (246)
Q Consensus       150 ~~~l~~~L~~-~~~~~~~~~--~~--~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-----------  213 (246)
                      ++.+.+.|++ ++++..+.+  +.  ....+.+.++..      +..+ +...|.+  |.+..|..|..           
T Consensus       268 ~~~l~~~l~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~------~~~~-~~~~L~~--i~v~~g~~c~~~~~~~~~~~~~  338 (364)
T PLN02651        268 RERLLNGLRAKLGGVRVNGPRDPEKRYPGTLNLSFAYV------EGES-LLMGLKE--VAVSSGSACTSASLEPSYVLRA  338 (364)
T ss_pred             HHHHHHHHHhhCCCEEEECCCCcccCcCCEEEEEeCCC------CHHH-HHHHhCC--EEEEchhhcCCCCCCcCHHHHH
Confidence            8888888875 677764332  11  122344445421      2444 4545544  99988887632           


Q ss_pred             --------CCeEEEEeec--ChHHH
Q 042445          214 --------KDWLRITFAV--EPSAL  228 (246)
Q Consensus       214 --------~~~iRls~~~--~~~~l  228 (246)
                              .+.+|+|++.  +++++
T Consensus       339 ~g~~~~~~~~~vR~S~~~~~t~~di  363 (364)
T PLN02651        339 LGVPEEMAHGSLRLGVGRFTTEEEV  363 (364)
T ss_pred             cCCChHHhCceEEEEcCCCCCHHHc
Confidence                    2689999995  66654

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=99.49  E-value=5.6e-12  Score=109.59  Aligned_cols=215  Identities=10%  Similarity=0.013  Sum_probs=134.7

Q ss_pred             hhhhhhh---ccc-cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCc-cccccCCcccEEEEcc
Q 042445            2 ELINQDI---TRE-FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFV-SMGVFGSIVPLLTLGS   76 (246)
Q Consensus         2 e~~~~~~---~~~-~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~-~~~~~~~~~~~i~~~s   76 (246)
                      +.+++.+   +++ ++... +.+|...+   +++|.++|+++|+++++|++++.......... ++.     .--+++.|
T Consensus       172 ~~L~~~l~~~~~~lvi~~~-s~~g~~~d---i~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~~~~-----~~D~l~~S  242 (452)
T PTZ00094        172 DKLEELAKAFRPKLIIAGA-SAYPRDID---YKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPFP-----YADVVTTT  242 (452)
T ss_pred             HHHHHHHHHhCCCEEEEeC-CCCCCccC---HHHHHHHHHHcCCEEEEeccchhccccCCCCCCCCC-----CCcEEEcC
Confidence            3455555   233 33333 45888777   77888889999999999999997665432211 111     12388999


Q ss_pred             cccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHh------hhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 042445           77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFL------NISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETA  150 (246)
Q Consensus        77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~  150 (246)
                      ..|.+++|.  -|++.+.+        ++.+.+....      .+.++.+.....++..++........++.++++.+++
T Consensus       243 ~hK~l~GP~--Gg~l~~~~--------~~~~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~  312 (452)
T PTZ00094        243 THKSLRGPR--SGLIFYRK--------KVKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNA  312 (452)
T ss_pred             CccCCCCCC--ceEEEEec--------ccchHHHHhhccccCCCCCCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence            999764443  38888866        4333332221      1111445555556666665332344567778889999


Q ss_pred             HHHHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEe-cCCCcCC----CCeEEEEeec--
Q 042445          151 DKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVL-PGITVGL----KDWLRITFAV--  223 (246)
Q Consensus       151 ~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~-pg~~f~~----~~~iRls~~~--  223 (246)
                      +.+.+.|++. |+............++.+....   .  +.+.+..+|.++||.+. ++..+..    ++++|+|+..  
T Consensus       313 ~~l~~~L~~~-g~~v~~~~~~~~~~~v~~~~~~---~--~~~~~~~~L~~~gI~vs~~~~p~~~~~~~~~~vRis~~~~t  386 (452)
T PTZ00094        313 KALAAALEKR-GYDLVTGGTDNHLVLVDLRPFG---I--TGSKMEKLLDAVNISVNKNTIPGDKSALNPSGVRLGTPALT  386 (452)
T ss_pred             HHHHHHHHhC-CcEEecCCCCCceEeecCCcCC---C--CHHHHHHHHHHCCcEEecccCCCCCcCCCCCeEEECCHHHH
Confidence            9999999875 6553222111233444454322   1  45566777888999994 4433332    6899999863  


Q ss_pred             ----ChHHHHHHHHHHHHHHHH
Q 042445          224 ----EPSALENGLGRMKAFYDR  241 (246)
Q Consensus       224 ----~~~~l~~~~~~l~~~~~~  241 (246)
                          ++++++++++.|.+.++.
T Consensus       387 t~g~~~~di~~l~~~l~~~~~~  408 (452)
T PTZ00094        387 TRGAKEKDFKFVADFLDRAVKL  408 (452)
T ss_pred             hCCCCHHHHHHHHHHHHHHHHH
Confidence                389999999999998874

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.49  E-value=3.8e-12  Score=109.67  Aligned_cols=191  Identities=13%  Similarity=0.082  Sum_probs=128.1

Q ss_pred             CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCcc-ccccCCcccEEEEcccccccccCC-ceEEEEEeeCCCCCc
Q 042445           23 GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVS-MGVFGSIVPLLTLGSISKRGIVPG-LRLGWLVTSDPNGIL  100 (246)
Q Consensus        23 ~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~-~~~~~~~~~~i~~~s~sK~~~~~g-~r~G~i~~~~~~~~~  100 (246)
                      .++.+++++|.++|++||+++|+||++.++...|..+.. ...+.+  .++   +++|.+ ..| +.++.+++++     
T Consensus       225 ~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~~~~~~~~~v~p--Di~---~~gK~l-~gG~~p~~a~~~~~-----  293 (427)
T TIGR00508       225 FYHPTYLKRVQALCKQYDILLIADEIATGFGRTGKLFACEHAGVVP--DIL---CVGKAL-TGGYMTLSATVTTD-----  293 (427)
T ss_pred             cCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCccchhhhcCCCC--CEE---Eechhh-hcCcccceEEEEcH-----
Confidence            557899999999999999999999999887666544322 222222  233   379997 467 4788888887     


Q ss_pred             chhhHHHHHHHH------hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccc-CCCCce
Q 042445          101 QDSGIVDSIKIF------LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPK-KPEGSM  173 (246)
Q Consensus       101 ~~~~~~~~l~~~------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~g~  173 (246)
                         ++.+.+...      ...++..||++.+++.+.|+...+.   ...+..+++.+++.+.|+++.....+. ...-|.
T Consensus       294 ---~~~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~l~~~---~~~~~~~~~~~~l~~~L~~l~~~~~i~~vrg~G~  367 (427)
T TIGR00508       294 ---KVAQTISSGEAGCFMHGPTFMGNPLACAVAEASLAILLEG---EWQKQVSAIENQLKRELSPLRKNPVVKDVRVLGA  367 (427)
T ss_pred             ---HHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHhhcCCCEEeEecccc
Confidence               888887642      2234467899999998888742221   234556666666777776642111010 111255


Q ss_pred             EEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHHHHH
Q 042445          174 FVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAFYDR  241 (246)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~~~  241 (246)
                      ++.+.+....      ....+...+.++||.+.+..     +.+|++..  .++++++++++++.+++++
T Consensus       368 ~~~i~~~~~~------~~~~~~~~l~~~Gv~~~~~~-----~~l~~~ppl~~t~~~id~~~~~l~~~l~~  426 (427)
T TIGR00508       368 IGVVEMYKPV------NVEELQKKFVEQGVWIRPFG-----KLIYVMPPYIITTEQLQKLTAALIEALHE  426 (427)
T ss_pred             EEEEEECCcc------CHHHHHHHHHHCCeEEEecC-----CEEEEECCCCCCHHHHHHHHHHHHHHHhc
Confidence            5666664321      33445666778999997632     47899887  4999999999999999864

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=99.49  E-value=6.9e-12  Score=107.81  Aligned_cols=194  Identities=13%  Similarity=0.061  Sum_probs=120.1

Q ss_pred             hHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCCCcchhhHHH
Q 042445           28 FVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQDSGIVD  107 (246)
Q Consensus        28 ~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~  107 (246)
                      ++.+|.++|++||+++++|++++...+..... . ..+.  .--++++|++|.++++.  -|++++.+.       .+..
T Consensus       184 dl~~l~~la~~~g~~livD~Aha~G~~~~g~~-~-~~~~--~~Di~~~s~~K~l~g~~--GG~v~~~~~-------~~~~  250 (416)
T PRK13034        184 DFARFREIADEVGALLMVDMAHIAGLVAAGEH-P-NPFP--HAHVVTTTTHKTLRGPR--GGMILTNDE-------EIAK  250 (416)
T ss_pred             CHHHHHHHHHHcCCEEEEeCcccccCcccCCC-C-CCCC--CceEEEEeCcccCCCCC--CeEEEECcH-------HHHH
Confidence            58889999999999999999998665542111 1 1111  13488999999985442  277777662       3444


Q ss_pred             HHHHHhhhc--CCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC-CCceEEEEEeccccc
Q 042445          108 SIKIFLNIS--SDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKP-EGSMFVMVKLNYSLL  184 (246)
Q Consensus       108 ~l~~~~~~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~g~~~~~~~~~~~~  184 (246)
                      .++.....+  .+..+....++...+.........+.++++.++.+.+.+.|++. |+.. ..+ .....+++.+.... 
T Consensus       251 ~~~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~~L~~~-G~~~-~~~~~~t~i~~v~~~~~~-  327 (416)
T PRK13034        251 KINSAVFPGLQGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEVLKER-GYDL-VSGGTDNHLLLVDLRPKG-  327 (416)
T ss_pred             HHHhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHc-CCEe-ccCCCCCcEEEEEcCCCC-
Confidence            444432221  12223333333323322111223455788899999999999887 6663 222 34566666665432 


Q ss_pred             cCCCChHHHHHHHHHhcCeEEecCC------CcCCCCeEEEEeec------ChHHHHHHHHHHHHHHHH
Q 042445          185 EGINSDMEFALKLAKEESVIVLPGI------TVGLKDWLRITFAV------EPSALENGLGRMKAFYDR  241 (246)
Q Consensus       185 ~~~~~~~~~~~~ll~~~gi~v~pg~------~f~~~~~iRls~~~------~~~~l~~~~~~l~~~~~~  241 (246)
                          .+...+.+.|+++||.+.+..      ....+..+|+++..      ++++++++++.|.+++.+
T Consensus       328 ----~~~~~~~~~L~~~GI~v~~~~~p~~~~~p~~~~~lR~~~~~~t~~~~~~~di~~l~~~l~~~~~~  392 (416)
T PRK13034        328 ----LSGKDAEQALERAGITVNKNTVPGDTESPFVTSGIRIGTPAGTTRGFGEAEFREIANWILDVLDD  392 (416)
T ss_pred             ----CCHHHHHHHHHhCCcEEeccCCCCCCcCCCCCCeeEeCcHHHHhCCCCHHHHHHHHHHHHHHHhc
Confidence                145556677889999987521      11126789999653      579999999999988764

>PRK06149 hypothetical protein; Provisional

Probab=99.49  E-value=4e-12  Score=119.44  Aligned_cols=207  Identities=16%  Similarity=0.138  Sum_probs=133.9

Q ss_pred             CcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeC
Q 042445           16 QVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSD   95 (246)
Q Consensus        16 p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~   95 (246)
                      +++-....+++++++++.++|++||+++|.||++.++...|..+.....++-...   +-+++|.+| .|+.+|.+++++
T Consensus       754 ~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv~PD---ivt~gK~lg-~G~Pl~av~~~~  829 (972)
T PRK06149        754 YGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGVVPD---IITMAKGMG-NGHPLGAVITRR  829 (972)
T ss_pred             ccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhhhhcCCCCC---EEEeccccc-CCeeeEEEEEcH
Confidence            3444446678899999999999999999999999988766643322222322223   337899964 679999999998


Q ss_pred             CCCCcchhhHHHHHHH--HhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhh----cCCCCccccCC
Q 042445           96 PNGILQDSGIVDSIKI--FLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLK----EIPCITCPKKP  169 (246)
Q Consensus        96 ~~~~~~~~~~~~~l~~--~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~----~~~~~~~~~~~  169 (246)
                              ++.+.+..  ....+++.||++.+++.+.|+...++.   ..+..++.-+++.+.|+    +.|.+.. +. 
T Consensus       830 --------~i~~~~~~~~~~~sT~~gnP~~~aaala~L~~i~~e~---l~~~~~~~G~~l~~~L~~l~~~~~~i~~-vr-  896 (972)
T PRK06149        830 --------EIAEALEAEGYFFSSTGGSPVSCRIGMAVLDVLREEK---LQENARRVGDHLKARLEALADRHPLIGA-VH-  896 (972)
T ss_pred             --------HHHhhhccCCcccCCCCCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHhCCCeEE-Ee-
Confidence                    88887754  222344789999999999998433222   22233333334444443    3432221 22 


Q ss_pred             CCceEEEEEecccc--ccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHHHHH
Q 042445          170 EGSMFVMVKLNYSL--LEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAFYDR  241 (246)
Q Consensus       170 ~~g~~~~~~~~~~~--~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~~~  241 (246)
                      .-|+++-+++....  ..........+...+.++||.+.|....  .+.+||...  .+++++++++++|.+++++
T Consensus       897 G~Gl~~gvel~~~~~~~~~~~~~~~~i~~~l~~~Gvl~~~~g~~--~~vl~~~Ppl~it~~~id~~~~~l~~~l~~  970 (972)
T PRK06149        897 GMGLYLGVELVRDRQTLEPATEETAAICDRLLELGVIMQPTGDH--LNILKIKPPLCLDRESADFFVDMLDRVLTE  970 (972)
T ss_pred             ecceEEEEEEecCcccCCCChHHHHHHHHHHHhCCeEEeecCCC--CCEEEEECCCcCCHHHHHHHHHHHHHHHHh
Confidence            34666777774211  0000012334556677899999874311  478999877  4999999999999999865

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.47  E-value=4.7e-12  Score=109.95  Aligned_cols=204  Identities=11%  Similarity=0.032  Sum_probs=128.1

Q ss_pred             cc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCCC
Q 042445           21 GS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGI   99 (246)
Q Consensus        21 G~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~   99 (246)
                      |. .++.++++++.++|++||+++|.||+..++...|..+ ....++-...   +-+++|.++ .|+.+|.+++.+    
T Consensus       245 G~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~-a~e~~gv~PD---iv~~gKglg-gG~PlsAv~~~~----  315 (464)
T PRK06938        245 GVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMF-AFEHAGIIPD---VVVLSKAIG-GSLPLAVVVYRE----  315 (464)
T ss_pred             CCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcHHH-HHHhcCCCCC---EEEeecccc-CCCceEEEeehh----
Confidence            44 4568999999999999999999999999987666432 2222322222   444689975 579999999987    


Q ss_pred             cchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEE
Q 042445          100 LQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEE-EFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMV  177 (246)
Q Consensus       100 ~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~  177 (246)
                          ++ +.+... ...+++.||++.+++.+.|+...+ ...++.++.-...++.+.+..++.|.+..  ...-|+++.+
T Consensus       316 ----~~-~~~~~~~~~~T~~gnpla~Aaa~a~L~~l~~~~l~~~~~~~G~~l~~~L~~l~~~~~~i~~--VrG~Glm~gi  388 (464)
T PRK06938        316 ----WL-DTWQPGAHAGTFRGNQMAMAAGSATLRYIKEHRLAEHAAAMGERLREHLRQLQRDYPQLGD--VRGRGLMLGV  388 (464)
T ss_pred             ----Hh-hccCCCCCCCCCCcCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCeee--eeccceEEEE
Confidence                53 443222 334558899999999999885333 22233332222222222222233543322  2234677777


Q ss_pred             Eeccccc-cC----CC---ChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHHHHHH
Q 042445          178 KLNYSLL-EG----IN---SDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       178 ~~~~~~~-~~----~~---~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~~~~  242 (246)
                      ++..... .+    .+   .....+...+.++||.+.++..+  .+.+||...  .++++++++++++.+++.+.
T Consensus       389 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~g~~--~~~l~~~Ppl~it~~eid~~~~~l~~~l~~~  461 (464)
T PRK06938        389 EIVDPQGEPDALGHPPANGELASLIQRECLRRGLILELGGRH--GSVVRFLPPLIITAEQIDEVAEIFAEAVAAA  461 (464)
T ss_pred             EeccCcccccccccCCccHHHHHHHHHHHHHCCeEEeecCCC--CCEEEEECCCccCHHHHHHHHHHHHHHHHHH
Confidence            7743210 00    00   11234455677899999875322  478999866  39999999999999999764

>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.47  E-value=1.1e-11  Score=106.64  Aligned_cols=148  Identities=11%  Similarity=0.044  Sum_probs=96.6

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.++++    ++.+|+||+|.+.+   +++|.++|+++|+++|+|.++......    .++ .++   --+++.|.
T Consensus       140 ~~l~~~i~~~TklV~~e~~~np~g~v~D---i~~I~~la~~~gi~livD~t~a~~~~~----~pl-~~G---aD~vv~S~  208 (433)
T PRK08134        140 DGWRAAIRPNTRLLFGETLGNPGLEVLD---IPTVAAIAHEAGVPLLVDSTFTTPYLL----RPF-EHG---ADLVYHSA  208 (433)
T ss_pred             HHHHHhcCCCCeEEEEECCCcccCcccC---HHHHHHHHHHcCCEEEEECCCcccccC----Cch-hcC---CCEEEecc
Confidence            4566667664    78889999999988   899999999999999999998754322    122 222   23889999


Q ss_pred             ccccccCCceEEEEEeeCCC-CCc-----c--------------hh-----hHHHHHH--HHhhhcCCCCchHHHHHHHH
Q 042445           78 SKRGIVPGLRLGWLVTSDPN-GIL-----Q--------------DS-----GIVDSIK--IFLNISSDPATFIQGAVPQI  130 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~-~~~-----~--------------~~-----~~~~~l~--~~~~~~~~~~~~~q~~~~~~  130 (246)
                      +|.++.+|-.+|.+++.... .+.     .              ..     .+..+.+  .....+..+++...+.+.+-
T Consensus       209 tK~l~g~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~ls~~~A~l~~~g  288 (433)
T PRK08134        209 TKFLGGHGTAIGGVLVDGGRFDWEASGKFPELTEPYAGFHGMVFAEESTVAAFLLRARREGLRDFGACLSPMNAWQLLQG  288 (433)
T ss_pred             ccccCCCCCceEEEEEecCccccccccccccccCCcccccccchhhccchhHHHHHHHHHHHHhcCCCCCHHHHHHHhcC
Confidence            99999899888887663210 000     0              00     0001111  11223335566666655555


Q ss_pred             HhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCcc
Q 042445          131 LEKTEEEFFSKIIDILRETADKCCDRLKEIPCITC  165 (246)
Q Consensus       131 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~  165 (246)
                      |+.     +..+.++..++...+.+.|+++|.+..
T Consensus       289 L~t-----l~~R~~~~~~nA~~la~~L~~~p~V~~  318 (433)
T PRK08134        289 IET-----LPLRMERHVANTRKVVAFLASHPAVAR  318 (433)
T ss_pred             CCc-----HHHHHHHHHHHHHHHHHHHHhCCCccE
Confidence            553     667777778889999999988776643

>PRK07481 hypothetical protein; Provisional

Probab=99.47  E-value=5e-12  Score=109.56  Aligned_cols=198  Identities=14%  Similarity=0.130  Sum_probs=127.9

Q ss_pred             cc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCC-ceEEEEEeeCCCC
Q 042445           21 GS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPG-LRLGWLVTSDPNG   98 (246)
Q Consensus        21 G~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g-~r~G~i~~~~~~~   98 (246)
                      |. .+++++++++.++|++||+++|.||++.++...|..+. ...++-...   +-+++|.++ .| +.+|.+++++   
T Consensus       227 G~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a-~~~~gv~PD---iv~~gKgl~-gG~~Pi~av~~~~---  298 (449)
T PRK07481        227 GVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGSWFG-SRGWGVKPD---IMCLAKGIT-SGYVPLGATMVNA---  298 (449)
T ss_pred             CCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCchhhH-hhhcCCCCC---EEEEeeccc-CCCcCceEEEEcH---
Confidence            44 56788999999999999999999999999876654332 122222222   444689964 56 6999999998   


Q ss_pred             CcchhhHHHHHHHH--------hhhcCCCCchHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHHHHHhhc----CCCCcc
Q 042445           99 ILQDSGIVDSIKIF--------LNISSDPATFIQGAVPQILEKTEE-EFFSKIIDILRETADKCCDRLKE----IPCITC  165 (246)
Q Consensus        99 ~~~~~~~~~~l~~~--------~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~  165 (246)
                           ++.+.+...        +..+++.||++.+++.+.|+...+ ..+++.    ++.-+.+.+.|++    .+-+..
T Consensus       299 -----~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~----~~~g~~l~~~L~~l~~~~~~i~~  369 (449)
T PRK07481        299 -----RIADAFEANADFGGAIMHGYTYSGHPVACAAALATLDIVVREDLPANA----AKRGAYLLEGLQPLKERFELVGD  369 (449)
T ss_pred             -----HHHHHHhccCccccccccCCCCCCCHHHHHHHHHHHHHHHhhhHHHHH----HHHHHHHHHHHHHHhhcCCCeEE
Confidence                 888877531        234557899999999998874332 223333    3333334444433    432221


Q ss_pred             ccCCCCceEEEEEeccccc-cCC----CChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHH
Q 042445          166 PKKPEGSMFVMVKLNYSLL-EGI----NSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAF  238 (246)
Q Consensus       166 ~~~~~~g~~~~~~~~~~~~-~~~----~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~  238 (246)
                       +. .-|.++.+++..... +..    ......+...+.++||.+.+..     +.+|++...  ++++++++++.+.++
T Consensus       370 -vr-G~Glm~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~g-----~~i~l~Ppl~it~~eid~~~~~l~~~  442 (449)
T PRK07481        370 -VR-GKGLMLALDLVADKATREPIDPSKGYANAVADVARENGVLVRPSG-----TKIILSPPLVIQREDVDRIVDALDAG  442 (449)
T ss_pred             -Ee-ecceEEEEEecccccccCCCCchhHHHHHHHHHHHhCCeEEEecC-----CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence             22 336666677743210 000    0123345556778999998743     358998664  999999999999999


Q ss_pred             HHHH
Q 042445          239 YDRH  242 (246)
Q Consensus       239 ~~~~  242 (246)
                      +++.
T Consensus       443 l~~~  446 (449)
T PRK07481        443 LSAV  446 (449)
T ss_pred             HHhc
Confidence            9764

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.46  E-value=1.2e-11  Score=107.46  Aligned_cols=199  Identities=15%  Similarity=0.126  Sum_probs=129.3

Q ss_pred             cc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCC-ceEEEEEeeCCCC
Q 042445           21 GS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPG-LRLGWLVTSDPNG   98 (246)
Q Consensus        21 G~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g-~r~G~i~~~~~~~   98 (246)
                      |. .++++++++|.++|++||+++|.||++.++...|..+ ....++-...   +-+++|.++ .| +.+|.+++++   
T Consensus       229 G~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~~~-a~~~~gv~PD---iv~~gKgl~-gG~~Pi~av~~~~---  300 (466)
T PRK07030        229 GMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTMF-ACEQAGIRPD---FLCLSKALT-GGYLPLAAVLTTD---  300 (466)
T ss_pred             CcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccccch-HHHhcCCCCC---EEeeehhcc-CCcccceEEEecH---
Confidence            44 5677999999999999999999999999987666433 2222332223   444589964 58 5999999998   


Q ss_pred             CcchhhHHHHHHH--------HhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh---hcCCCCcccc
Q 042445           99 ILQDSGIVDSIKI--------FLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRL---KEIPCITCPK  167 (246)
Q Consensus        99 ~~~~~~~~~~l~~--------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L---~~~~~~~~~~  167 (246)
                           ++.+.+..        ....+++.||++.+++.+.|+...++.   ..+..++.-+++.+.|   .+.+.+.. +
T Consensus       301 -----ei~~~~~~~~~~~~~~~h~~T~~gnpla~aaa~a~L~~i~~~~---l~~~~~~~G~~l~~~L~~l~~~~~v~~-v  371 (466)
T PRK07030        301 -----TVYQAFYDDYPTLRAFLHSHSYTGNPLACAAALATLDIFEQDN---VIENNRALARRMAEATAHLADHPHVAE-V  371 (466)
T ss_pred             -----HHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHhcCCCEEE-e
Confidence                 88877642        133455789999999999988543322   2222333333333333   33443332 2


Q ss_pred             CCCCceEEEEEeccccc--cCCCCh---HHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHHHH
Q 042445          168 KPEGSMFVMVKLNYSLL--EGINSD---MEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAFYD  240 (246)
Q Consensus       168 ~~~~g~~~~~~~~~~~~--~~~~~~---~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~~  240 (246)
                      . .-|+++-+++.....  .+...+   ...+...+.++||.+.+.     .+.+|+...  .++++++++++++.++++
T Consensus       372 r-G~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~-----g~~i~~~Ppl~it~~eid~~~~~l~~al~  445 (466)
T PRK07030        372 R-QTGMILAIEMVQDKASKTPYPWQERRGLKVYQHALERGALLRPL-----GSVVYFLPPYVITPEQIDFLAEVASEGID  445 (466)
T ss_pred             E-eceeEEEEEeccCccccccCcchhHHHHHHHHHHHHCCeEEEec-----CCEEEEECCccCCHHHHHHHHHHHHHHHH
Confidence            2 346667777743210  000001   134555677899999773     257898766  399999999999999998


Q ss_pred             HH
Q 042445          241 RH  242 (246)
Q Consensus       241 ~~  242 (246)
                      +.
T Consensus       446 ~~  447 (466)
T PRK07030        446 IA  447 (466)
T ss_pred             HH
Confidence            75

>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=99.46  E-value=8.8e-12  Score=103.53  Aligned_cols=140  Identities=16%  Similarity=0.132  Sum_probs=99.8

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.+.++    ++-+|.||+..+.+   +++|.++|+++|+++|+|++++......    ++ .++.+   |+++|.
T Consensus       153 ~~~~~~i~~~t~~V~~ESPsNPll~v~D---I~~l~~la~~~g~~vvVDnTf~~p~~~~----pL-~lGAD---IV~hSa  221 (409)
T KOG0053|consen  153 KKILKAIKENTKAVFLESPSNPLLKVPD---IEKLARLAHKYGFLVVVDNTFGSPYNQD----PL-PLGAD---IVVHSA  221 (409)
T ss_pred             HHHHHhhccCceEEEEECCCCCcccccc---HHHHHHHHhhCCCEEEEeCCcCcccccC----hh-hcCCC---EEEEee
Confidence            3566777774    88999999999876   8999999999999999999999764321    11 22222   999999


Q ss_pred             ccccccCCceEEEEEeeC-CCCCcchhhHHHHHHHHh-hhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445           78 SKRGIVPGLRLGWLVTSD-PNGILQDSGIVDSIKIFL-NISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD  155 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~-~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  155 (246)
                      +|.+++..--+|-+++.+ .       ++..+++..+ ..+...+|+......+-+..     +.-+.++..++...+.+
T Consensus       222 TKyi~Ghsdvi~G~iv~n~~-------~~~~~l~~~~~~lg~~~~p~~~~ll~Rglkt-----l~lRi~~~~ena~~~A~  289 (409)
T KOG0053|consen  222 TKYIGGHSDVIGGSVVLNSE-------ELASRLKFLQEDLGWCEDPFDLFLLSRGLKT-----LHLRINKHSENALKIAL  289 (409)
T ss_pred             eeeecCCcceeeeEEecCcH-------HHHHHHHHHHHHhcCCCCHHHHHHHhcCcch-----hhhhHHHHHHHHHHHHH
Confidence            999998775555554443 2       8888888774 34557888888777666663     44444455667667777


Q ss_pred             HhhcCCCCc
Q 042445          156 RLKEIPCIT  164 (246)
Q Consensus       156 ~L~~~~~~~  164 (246)
                      .|+..|.++
T Consensus       290 ~Le~~~~v~  298 (409)
T KOG0053|consen  290 LLEAHPKVK  298 (409)
T ss_pred             HhhhCCcee
Confidence            777655544

>PRK07036 hypothetical protein; Provisional

Probab=99.45  E-value=1.4e-11  Score=107.11  Aligned_cols=201  Identities=17%  Similarity=0.178  Sum_probs=129.2

Q ss_pred             cc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCC-ceEEEEEeeCCCC
Q 042445           21 GS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPG-LRLGWLVTSDPNG   98 (246)
Q Consensus        21 G~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g-~r~G~i~~~~~~~   98 (246)
                      |. .++.+++++|.++|++||+++|.||++.++...|..+..-..++-...   +-+++|.+ ..| +.+|.+++++   
T Consensus       234 G~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~~gv~PD---ivt~gK~l-~gG~~Pi~av~~~~---  306 (466)
T PRK07036        234 GVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGHFFASEAVFGIQPD---IITFAKGL-TSGYQPLGAVIISE---  306 (466)
T ss_pred             CCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCchhhhhhhhcCCCCC---EEEEcccc-ccCccccEEEEEcH---
Confidence            44 567899999999999999999999999988766543322112222222   44678996 457 5999999988   


Q ss_pred             CcchhhHHHHHHH--------HhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhh---cCCCCcccc
Q 042445           99 ILQDSGIVDSIKI--------FLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLK---EIPCITCPK  167 (246)
Q Consensus        99 ~~~~~~~~~~l~~--------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~---~~~~~~~~~  167 (246)
                           ++.+.+..        ....+++.||++.+++.+.|+...+.   ...+..++.-+.+.+.|+   +.+.+.. +
T Consensus       307 -----~i~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~Le~i~~~---~l~~~~~~~g~~l~~~L~~l~~~~~v~~-v  377 (466)
T PRK07036        307 -----RLLDVISGPNAKGNVFTHGFTYSGHPVACAAALKNIEIMERE---GLCEHVREVGPYFEERLASLRELPLVGD-V  377 (466)
T ss_pred             -----HHHHHHhcccCcCcccccCCCCCCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHhccCCCEEE-E
Confidence                 88887752        12235578999999999988743221   222333333444444443   3432221 2


Q ss_pred             CCCCceEEEEEeccccc-cCC-CC---hHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHH
Q 042445          168 KPEGSMFVMVKLNYSLL-EGI-NS---DMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYD  240 (246)
Q Consensus       168 ~~~~g~~~~~~~~~~~~-~~~-~~---~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~  240 (246)
                      . .-|.++.+++..... +.. ..   ....+...+.++||.+.|..     +.+|++...  ++++++++++++.++++
T Consensus       378 r-G~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~-----~~~~l~Ppl~it~~~id~~~~~l~~al~  451 (466)
T PRK07036        378 R-GDHLMACVECVADKGSKALLPEDIAIGQRIDRHCQERGLLVRPLE-----HLCVLSPPLIITRAQIDEIVAILRAAIE  451 (466)
T ss_pred             E-eeceEEEEEEccCccccCCCCchhHHHHHHHHHHHHCCcEEeecC-----CEEEEeCCCcCCHHHHHHHHHHHHHHHH
Confidence            2 336666777743210 000 01   12345566778999997632     568888664  99999999999999987


Q ss_pred             HHh
Q 042445          241 RHA  243 (246)
Q Consensus       241 ~~~  243 (246)
                      +..
T Consensus       452 ~~~  454 (466)
T PRK07036        452 ETA  454 (466)
T ss_pred             HHH
Confidence            764

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.45  E-value=8.7e-12  Score=108.24  Aligned_cols=205  Identities=15%  Similarity=0.087  Sum_probs=128.2

Q ss_pred             cCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCCCcc
Q 042445           22 SGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQ  101 (246)
Q Consensus        22 ~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~  101 (246)
                      ...++++++++.++|++||+++|.||+..++...|..+ ....++-...   +-+++|.++ .|+.+|.+++.+      
T Consensus       241 ~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~~~-a~~~~gv~PD---ivt~gK~l~-gG~Pi~av~~~~------  309 (459)
T PRK06931        241 NPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGKMF-AFEHAGIEPD---IIVMSKAVG-GGLPLAVLGIKK------  309 (459)
T ss_pred             cCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCchHH-HhhhcCCCCC---EEEeccccc-CCcceeeeeeHH------
Confidence            35678999999999999999999999999987666432 2222322222   455689965 579999888765      


Q ss_pred             hhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEe
Q 042445          102 DSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEE-EFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKL  179 (246)
Q Consensus       102 ~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~  179 (246)
                        + ++.+... ...+++.||++.+++.+.|+...+ ..+++.++.-...++.+.+..++.|.+.. +. .-|.++-+++
T Consensus       310 --~-~~~~~~~~~~~T~~gnpla~aaala~L~~l~~~~l~~~~~~~G~~l~~~L~~l~~~~~~i~~-vr-G~Glm~giel  384 (459)
T PRK06931        310 --E-FDAWQPGGHTGTFRGNQLAMATGLTTLKILKEENLAQNAAERGEWLKAQLAELQKRYPCIGN-VR-GRGLMIGIEI  384 (459)
T ss_pred             --H-HhhccCCCCCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCCeEe-Ee-cCceEEEEEE
Confidence              4 3444222 334558899999999998884332 22333332222223333332233543321 22 3466667777


Q ss_pred             cccc-cc----CCC---ChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHHhh
Q 042445          180 NYSL-LE----GIN---SDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDRHAE  244 (246)
Q Consensus       180 ~~~~-~~----~~~---~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~~~  244 (246)
                      .... ..    ...   +-...+...+.++||.+.++...  .+.+|+.+..  ++++++++++++.+++++.-+
T Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~--~~~l~~~Ppl~it~~eid~~~~~l~~~l~~~~~  457 (459)
T PRK06931        385 VDERQPADAMGSYPADGELAAAIQKACFENGLLLERGGRN--GNVVRLLPPLLITQAECEEFIDRFEQALLAAVK  457 (459)
T ss_pred             ccCcccccccccCCccHHHHHHHHHHHHHCCcEEeecCCC--CCEEEEECCCCcCHHHHHHHHHHHHHHHHHHHh
Confidence            4321 00    000   11234455667899999874322  5789988774  999999999999999987543

>PRK06917 hypothetical protein; Provisional

Probab=99.45  E-value=1.5e-11  Score=106.48  Aligned_cols=204  Identities=15%  Similarity=0.140  Sum_probs=131.5

Q ss_pred             CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCc-eEEEEEeeCCCCCcc
Q 042445           23 GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGL-RLGWLVTSDPNGILQ  101 (246)
Q Consensus        23 ~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~-r~G~i~~~~~~~~~~  101 (246)
                      .++.+++++|.++|++||+++|.||++.++...+..+.. ..++-...   +-+++|.+ ..|+ .+|.+++.+      
T Consensus       217 ~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG~~~a~-~~~gv~PD---i~~~gK~l-~~G~~Pi~a~~~~~------  285 (447)
T PRK06917        217 VPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGAMFAM-EHWGVEPD---IMTLGKGL-GAGYTPIAATVVSD------  285 (447)
T ss_pred             cCCHHHHHHHHHHHHHcCCEEEEechhhCcCcccchhhH-HhcCCCCC---EEEeeehh-ccCCcceEEEEEcH------
Confidence            567899999999999999999999999987655543321 22222222   45679996 4564 899999988      


Q ss_pred             hhhHHHHHHHH-----hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc----CCCCccccCCCCc
Q 042445          102 DSGIVDSIKIF-----LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKE----IPCITCPKKPEGS  172 (246)
Q Consensus       102 ~~~~~~~l~~~-----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~g  172 (246)
                        ++.+.+...     ...+++.||++.+++.+.|+...+.   ...+..+++-+.+.+.|++    .+.+.. +. .-|
T Consensus       286 --~i~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~i~~-vr-G~G  358 (447)
T PRK06917        286 --RVMEPILRGSRSIMSGHTLSANPLSAATALAVLEYMEKH---NLPEKAAEKGEYLIKGLQKVQQQSTIIGD-VR-GKG  358 (447)
T ss_pred             --HHHHHHhccCcccccccCCCCCHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHhcCCCEEE-Ee-ecc
Confidence              888877532     2235578999999999988843221   2233344444444444443    432221 22 336


Q ss_pred             eEEEEEecccc-c-cCCC---ChHHHHHHHHHhcCeEEecCCC-cC--CCCeEEEEee--cChHHHHHHHHHHHHHHHHH
Q 042445          173 MFVMVKLNYSL-L-EGIN---SDMEFALKLAKEESVIVLPGIT-VG--LKDWLRITFA--VEPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       173 ~~~~~~~~~~~-~-~~~~---~~~~~~~~ll~~~gi~v~pg~~-f~--~~~~iRls~~--~~~~~l~~~~~~l~~~~~~~  242 (246)
                      +++.+++.... . +...   .....+...+.++||.+.|+.. ..  ..+.+|++..  .+++++++++++|.+++++.
T Consensus       359 l~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~g~~~~~i~l~Ppl~it~~eid~~~~~l~~~l~~~  438 (447)
T PRK06917        359 LLIGVEFVADKKTKQPFSKSQAVASELISVAAKNGLLLYPAVAGQDGKEGDAVIIAPPMTITYSELDELLSIFAKSVEEM  438 (447)
T ss_pred             eEEEEEEeccCCcCCCCcchhHHHHHHHHHHHhCCcEEEecccccCCCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence            66666663211 0 0000   1134455667789999987522 11  1578999877  59999999999999999876


Q ss_pred             hh
Q 042445          243 AE  244 (246)
Q Consensus       243 ~~  244 (246)
                      .+
T Consensus       439 ~~  440 (447)
T PRK06917        439 MQ  440 (447)
T ss_pred             HH
Confidence            43

>TIGR01814 kynureninase kynureninase

Probab=99.44  E-value=1.3e-11  Score=105.96  Aligned_cols=195  Identities=11%  Similarity=0.025  Sum_probs=121.7

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccc-cCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGI-VPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~g~r~G~   90 (246)
                      ++++++|+||...+   +++|.++|+++|+++++|++++.....    ..+...   +--+++.|..|.++ .||  .|.
T Consensus       176 ~~~~v~~~tG~~~~---~~~i~~~~~~~g~~~~vD~aq~~G~~~----id~~~~---gvD~~~~s~hK~l~g~pG--~~l  243 (406)
T TIGR01814       176 LLSGVQYYTGQLFD---MAAITRAAHAKGALVGFDLAHAVGNVP----LDLHDW---GVDFACWCTYKYLNAGPG--AGA  243 (406)
T ss_pred             EEeccccccceecC---HHHHHHHHHHcCCEEEEEcccccCCcc----cccccC---CCCEEEEcCccccCCCCC--eEE
Confidence            78889999999998   889999999999999999999864321    112222   23388899999864 556  333


Q ss_pred             EEeeCCCCCcchhhHHHHHHHH-h----------------------h-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHH
Q 042445           91 LVTSDPNGILQDSGIVDSIKIF-L----------------------N-ISSDPATFIQGAVPQILEKTEEEFFSKIIDIL  146 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~-~----------------------~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~  146 (246)
                      .+.++        . ...+... .                      . ...+++.....++..+++...+.-+++.+++.
T Consensus       244 ~v~~~--------~-~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~  314 (406)
T TIGR01814       244 FVHEK--------H-AHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQAGMEALRKKS  314 (406)
T ss_pred             EEehh--------h-hhhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            33333        1 1111110 0                      0 01134555666666666643233467777778


Q ss_pred             HHHHHHHHHHhhcC----CCCccccCCC---CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEE
Q 042445          147 RETADKCCDRLKEI----PCITCPKKPE---GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRI  219 (246)
Q Consensus       147 ~~~~~~l~~~L~~~----~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRl  219 (246)
                      ++..+.+.+.|+++    +++..+.+.+   -+..+.+.++ .      +.. .+.+.|.++||.+...    .++.+|+
T Consensus       315 ~~l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~~v~~~~~-~------~~~-~~~~~L~~~gi~v~~~----~~~~iRi  382 (406)
T TIGR01814       315 LLLTDYLEELIKARCGGPPVLTIITPRDHAQRGCQLSLTHP-V------PGK-AVFQALIKRGVIGDKR----EPSVIRV  382 (406)
T ss_pred             HHHHHHHHHHHHhhcCCCCceEEeCCCChhhcCCeEEEEec-C------CHH-HHHHHHHHCCEEEecc----CCCeEEE
Confidence            88888888888764    2454322211   1233444554 1      133 4455667889987532    2579999


Q ss_pred             Ee-e-c-ChHHHHHHHHHHHHHH
Q 042445          220 TF-A-V-EPSALENGLGRMKAFY  239 (246)
Q Consensus       220 s~-~-~-~~~~l~~~~~~l~~~~  239 (246)
                      |+ . . +.++++.+++.|++.+
T Consensus       383 S~~~~~nt~~did~l~~~l~~~~  405 (406)
T TIGR01814       383 APVPLYNTFVDVYDAVNVLEEIL  405 (406)
T ss_pred             echhccCCHHHHHHHHHHHHHHh
Confidence            98 4 3 8899999999998764

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>PRK06148 hypothetical protein; Provisional

Probab=99.44  E-value=1.7e-11  Score=115.41  Aligned_cols=208  Identities=13%  Similarity=0.073  Sum_probs=135.1

Q ss_pred             CcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeC
Q 042445           16 QVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSD   95 (246)
Q Consensus        16 p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~   95 (246)
                      +++--...+++++++++.++|++||+++|.||++.++...|..+......+-.   .-+-+++|.+ ..|+.+|.+++.+
T Consensus       794 ~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~gv~---PDivt~gK~l-ggG~Plgav~~~~  869 (1013)
T PRK06148        794 PSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGVV---PDIVTMGKPI-GNGHPMGAVVTTR  869 (1013)
T ss_pred             cCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhhhcCCC---cceeeecccc-cCCcceEEEEEcH
Confidence            33433346788999999999999999999999999987666422222222222   2255678996 4689999999998


Q ss_pred             CCCCcchhhHHHHHHHH--hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhh----cCCCCccccCC
Q 042445           96 PNGILQDSGIVDSIKIF--LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLK----EIPCITCPKKP  169 (246)
Q Consensus        96 ~~~~~~~~~~~~~l~~~--~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~----~~~~~~~~~~~  169 (246)
                              ++.+.+...  ...+++.||++.+++.+.|+...++.   ..+..++.-+.+.+.|+    +.+.+.. +. 
T Consensus       870 --------ei~~~~~~g~~~~~Tf~gnpla~aaa~a~L~~i~~e~---l~~~~~~~G~~l~~~L~~l~~~~~~i~~-Vr-  936 (1013)
T PRK06148        870 --------EIADSFDNGMEYFNTFGGNPVSCAIGLAVLDIIEDED---LQRNALEIGNYLLAGLRELQDRFDIIGD-VR-  936 (1013)
T ss_pred             --------HHHhhccCCCccccCCCCCHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHHHHHHHHhCCCceE-Ee-
Confidence                    888876532  23455889999999999988543222   22333333344444443    3432321 22 


Q ss_pred             CCceEEEEEeccccc-cCC-CChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHH
Q 042445          170 EGSMFVMVKLNYSLL-EGI-NSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       170 ~~g~~~~~~~~~~~~-~~~-~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~  242 (246)
                      .-|+++-+++....- ... ......+...+.++||.+.+....  .+.+||....  +++++++++++|.+++++.
T Consensus       937 G~Gl~~gvel~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g~~--~~vlr~~Ppl~it~~~id~~l~~l~~~l~~~ 1011 (1013)
T PRK06148        937 GMGLFLGIELVTDRKTKAPATAIARYVKNGARERGILIGTEGPH--DNVLKIRPPLIFSRADADHLLEVLDDVLAAA 1011 (1013)
T ss_pred             eeceEEEEEecCCccccCccHHHHHHHHHHHHhCCeEEeccCCC--CCEEEEeCCccCCHHHHHHHHHHHHHHHHHH
Confidence            336666677743210 000 012344556677899999774321  5889998774  9999999999999999764

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.43  E-value=1.3e-11  Score=106.44  Aligned_cols=199  Identities=15%  Similarity=0.102  Sum_probs=124.1

Q ss_pred             Ccc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCC
Q 042445           20 VGS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNG   98 (246)
Q Consensus        20 tG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~   98 (246)
                      .|. ..+.+++++|.++|++||+++|.||++.++ ..+... ....++-...   +-+++|.+ ..|+.+|.+++++   
T Consensus       213 ~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~-Rt~~~~-a~~~~gv~PD---ivt~gK~l-ggG~Pi~av~~~~---  283 (428)
T PRK12389        213 FGIVEPKPGFLEAVNELAHEAGALVIYDEVITAF-RFMYGG-AQDLLGVEPD---LTALGKII-GGGLPIGAYGGRK---  283 (428)
T ss_pred             CCCcCCCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCcch-hhHHhCCCCC---eeeechhh-cCCCceeEEeEHH---
Confidence            454 456789999999999999999999999988 333221 1111222212   44789996 5579999999988   


Q ss_pred             CcchhhHHHHHHH----HhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc----CCCCccccCCC
Q 042445           99 ILQDSGIVDSIKI----FLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKE----IPCITCPKKPE  170 (246)
Q Consensus        99 ~~~~~~~~~~l~~----~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~  170 (246)
                           ++++.+..    ....+++.||++.+++.+.|+.-.+.   ...+..+++-+++.+.|++    .+.+..+.. .
T Consensus       284 -----~i~~~~~~~~~~~~~~T~~gnpl~~Aaala~L~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~~~~v~r-~  354 (428)
T PRK12389        284 -----DIMEQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQQE---GVYEKLDRLGAMLEEGILEAAEKHGITITINR-L  354 (428)
T ss_pred             -----HHHhhhccCCCcccccCCccCHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEe-c
Confidence                 88887752    12335588999999999988843221   1333344444444444443    432221112 2


Q ss_pred             CceEEEEEeccccccC------C-CChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHHHHH
Q 042445          171 GSMFVMVKLNYSLLEG------I-NSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDR  241 (246)
Q Consensus       171 ~g~~~~~~~~~~~~~~------~-~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~~~  241 (246)
                      +|++ -+.+.......      . ......+...+.++||.+.|..    .+.+.+++..++++++++++++.+++++
T Consensus       355 ~g~~-gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----~~~~~~~l~~t~e~id~~~~~l~~~l~~  427 (428)
T PRK12389        355 KGAL-TVYFTDEKVTNYDQAERSDGEAFGKFFKLMLNQGINLAPSK----YEAWFLTTAHTEEDIEETLEAVDRAFAQ  427 (428)
T ss_pred             CcEE-EEEEeCCCCCChhhhcccCHHHHHHHHHHHHHCCcEeecCC----CCCeeecCCCCHHHHHHHHHHHHHHHHh
Confidence            3443 34453211000      0 0113455667778999998853    2234566667999999999999999864

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=99.42  E-value=1.7e-11  Score=103.31  Aligned_cols=181  Identities=11%  Similarity=0.094  Sum_probs=121.9

Q ss_pred             cCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCCCcc
Q 042445           22 SGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQ  101 (246)
Q Consensus        22 ~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~  101 (246)
                      ...+.++++++.++|++||+++|+||++.++ ..|..+ ....++-..+   +-+++|.++. |+.+|.++.+.      
T Consensus       178 ~~~~~~yl~~lr~lc~~~gillI~DEv~tG~-RtG~~~-a~~~~gv~PD---iv~~gK~lgg-G~P~~a~~~~~------  245 (364)
T PRK04013        178 VPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTGKFL-AIEHYKVEPD---IVTMGKGIGN-GVPVSLTLTNF------  245 (364)
T ss_pred             cCCCHHHHHHHHHHHHHcCCEEEEechhhcC-CCCchh-HHHhcCCCCC---EEEecccccC-CceeEEEEecc------
Confidence            3556789999999999999999999999988 555433 2222222223   4446899765 79999999887      


Q ss_pred             hhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEec
Q 042445          102 DSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEE-EFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLN  180 (246)
Q Consensus       102 ~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~  180 (246)
                        ++..   .....+++.||++.+++.+.|+...+ +.+++.++.       + ..+.. +.+.. +. .-|+++-+++.
T Consensus       246 --~~~~---~~~~~T~~gnp~~~aaa~a~l~~i~~~~l~~~~~~~-------l-~~l~~-~~v~~-vR-G~Gl~~gve~~  309 (364)
T PRK04013        246 --DVER---GKHGSTFGGNPLACKAVAVTLRILRRERLVEKAGEK-------F-IEIKG-ERVVT-TR-GRGLMIGIVLK  309 (364)
T ss_pred             --cccC---CCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHH-------H-HHhcc-Cccee-ee-eCcEEEEEEeC
Confidence              4311   12334668999999999999885432 233333332       1 22322 22221 12 33677777775


Q ss_pred             cccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHH
Q 042445          181 YSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       181 ~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~  242 (246)
                      .        ....+...+.++|+.+.+..    .+.+||....  +++++++++++|.+++++.
T Consensus       310 ~--------~~~~i~~~~~~~Gll~~~~g----~~vlr~~Ppl~it~~~i~~~~~~l~~~l~~~  361 (364)
T PRK04013        310 K--------PVGKYVEELQNRGYLVHTAG----QRVIRLLPPLIISKDTMEEAKSAIEGVINDI  361 (364)
T ss_pred             C--------cHHHHHHHHHhCCcEEeeCC----CCEEEEeCCcccCHHHHHHHHHHHHHHHHHH
Confidence            3        23344566778999987642    4789999874  9999999999999999764

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.42  E-value=1.2e-11  Score=107.40  Aligned_cols=201  Identities=13%  Similarity=0.084  Sum_probs=129.5

Q ss_pred             Ccc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCC-ceEEEEEeeCCC
Q 042445           20 VGS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPG-LRLGWLVTSDPN   97 (246)
Q Consensus        20 tG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g-~r~G~i~~~~~~   97 (246)
                      .|. .+++++++++.++|++||+++|.||++.++...|..+ ....++-...   +-+++|.++ .| +.+|.+++++  
T Consensus       237 gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG~~~-a~~~~gv~PD---iv~~gK~l~-gG~~Pi~av~~~~--  309 (460)
T PRK06916        237 GGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKMF-ACEHENVTPD---IMTAGKGLT-GGYLPIAITVTTD--  309 (460)
T ss_pred             CCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCchhh-HHHhcCCCCC---eeeeehhhh-cCccccceeeecH--
Confidence            354 4688999999999999999999999999886665432 2222222222   345789964 57 6999999998  


Q ss_pred             CCcchhhHHHHHHH--------HhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc---CCCCccc
Q 042445           98 GILQDSGIVDSIKI--------FLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKE---IPCITCP  166 (246)
Q Consensus        98 ~~~~~~~~~~~l~~--------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~---~~~~~~~  166 (246)
                            ++.+.+..        .+..+++.||++..++.+.|+...+.   ...+..+++-+.+.+.|++   .+.+.. 
T Consensus       310 ------ei~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~---~l~~~~~~~g~~l~~~l~~l~~~~~v~~-  379 (460)
T PRK06916        310 ------EIYNAFYGDYEEQKTFFHGHSYTGNPLGCAVALANLELYEKT---NLIEQVARKTEYVATQLEDLFALKHVGD-  379 (460)
T ss_pred             ------HHHHHhhccccccCccccCCCCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHhhcCCCeEE-
Confidence                  88776642        12335577999999999888743221   2233444444455555544   332321 


Q ss_pred             cCCCCceEEEEEecccc-ccCC-CC---hHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHHH
Q 042445          167 KKPEGSMFVMVKLNYSL-LEGI-NS---DMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAFY  239 (246)
Q Consensus       167 ~~~~~g~~~~~~~~~~~-~~~~-~~---~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~  239 (246)
                      +. .-|.++-+.+.... .+.. ..   ....+...+.++||.+.|..     +.+||...  .+++++++++++|.+++
T Consensus       380 vr-G~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g-----~~l~~~Ppl~it~~~id~~~~~l~~~l  453 (460)
T PRK06916        380 IR-QLGLMVGIELVKNKETKEPFEWTERVGVQVCKRSRELGMLTRPLG-----NTIVFMPPLASTIDELDEMLRILYKAI  453 (460)
T ss_pred             ee-cCCceeeEEeecccccccCCCchhhHHHHHHHHHHHCCeEEEecC-----CEEEEeCCcccCHHHHHHHHHHHHHHH
Confidence            22 23555556664321 0000 00   12345566778999998732     57888866  49999999999999999


Q ss_pred             HHHh
Q 042445          240 DRHA  243 (246)
Q Consensus       240 ~~~~  243 (246)
                      ++.-
T Consensus       454 ~~~~  457 (460)
T PRK06916        454 SDVT  457 (460)
T ss_pred             Hhhc
Confidence            7653

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=99.41  E-value=2.9e-11  Score=101.77  Aligned_cols=193  Identities=18%  Similarity=0.179  Sum_probs=114.8

Q ss_pred             cCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccc--cccccCCceEEEEEee
Q 042445           17 VFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSIS--KRGIVPGLRLGWLVTS   94 (246)
Q Consensus        17 ~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~s--K~~~~~g~r~G~i~~~   94 (246)
                      .||+|...+   +++|.++|+++|+++|+|++|+.......  ..+..+    ..+.+.|++  |.++  +.+.|++++.
T Consensus       113 ~~~~G~~~~---~~~i~~l~~~~~i~li~D~a~~~g~~~~~--~~~~~~----~d~~~~S~~~~K~~~--~~~gg~~~~~  181 (352)
T cd00616         113 VHLYGNPAD---MDAIMAIAKRHGLPVIEDAAQALGATYKG--RKVGTF----GDAGAFSFHPTKNLT--TGEGGAVVTN  181 (352)
T ss_pred             ECCCCCcCC---HHHHHHHHHHcCCeEEEECCCCCCCeECC--EEcccC----cceeEEcCCCCCCCc--ccCceEEEEC
Confidence            368998765   78888999999999999999985432211  011111    124566665  8863  3346888887


Q ss_pred             CCCCCcchhhHHHHHHHHhhhc----------------CCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhh
Q 042445           95 DPNGILQDSGIVDSIKIFLNIS----------------SDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLK  158 (246)
Q Consensus        95 ~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~  158 (246)
                      +.       ++.+.++.....+                ..++++...++..     ....+++..++.+++.+.+.+.|+
T Consensus       182 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~-----~l~~~~~~~~~~~~~~~~~~~~L~  249 (352)
T cd00616         182 DE-------ELAERARLLRNHGRDRDRFKYEHEILGYNYRLSEIQAAIGLA-----QLEKLDEIIARRREIAERYKELLA  249 (352)
T ss_pred             CH-------HHHHHHHHHHHcCCCCCCCccccceeeeccCcCHHHHHHHHH-----HHHhhHHHHHHHHHHHHHHHHHhc
Confidence            53       6666665432211                1122222222221     223456677777889999999999


Q ss_pred             cCCCCccccCCC----CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcC----------------C-----
Q 042445          159 EIPCITCPKKPE----GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG----------------L-----  213 (246)
Q Consensus       159 ~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~----------------~-----  213 (246)
                      +++++..+..+.    ....+.+.++...  +  .+.+.+.+.|.++||.+.......                .     
T Consensus       250 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~v~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  325 (352)
T cd00616         250 DLPGIRLPDVPPGVKHSYHLYVIRLDPEA--G--ESRDELIEALKEAGIETRVHYPPLHHQPPYKKLLGYPPGDLPNAED  325 (352)
T ss_pred             CCCCccCCCCCCCCceeeEEEEEEECCcC--C--CCHHHHHHHHHHCCCCeeeecCccccCHhhhhccCCCcCCChHHHH
Confidence            888877433322    1233334444210  0  144555667788899765321110                0     


Q ss_pred             --CCeEEEEeec--ChHHHHHHHHHHH
Q 042445          214 --KDWLRITFAV--EPSALENGLGRMK  236 (246)
Q Consensus       214 --~~~iRls~~~--~~~~l~~~~~~l~  236 (246)
                        .+.+|+++..  ++++++..++.|+
T Consensus       326 ~~~~~l~l~~~~~~t~~di~~i~~~l~  352 (352)
T cd00616         326 LAERVLSLPLHPSLTEEEIDRVIEALR  352 (352)
T ss_pred             HHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence              2689999884  8899998888763

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=99.41  E-value=3.3e-11  Score=105.37  Aligned_cols=218  Identities=12%  Similarity=-0.011  Sum_probs=130.7

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.+.++    ++++| ||||.+  ..++++|.++|+++|+++++|.++.....+-  . ....+   +--++++|.
T Consensus       199 e~L~~~i~~~t~~V~v~~P-n~tG~~--~~dl~eI~~~a~~~gal~iVD~a~~~~~~g~--~-~~~~~---GaD~~~~~~  269 (481)
T PRK04366        199 EALKAAVGEDTAALMLTNP-NTLGLF--ERNILEIAEIVHEAGGLLYYDGANLNAILGK--A-RPGDM---GFDVVHLNL  269 (481)
T ss_pred             HHHHhhcccCCeEEEEeCC-CCcccc--chHHHHHHHHHHHcCCEEEEEecChhhhccc--C-Ccccc---CCCEEEEec
Confidence            3455555543    78899 699964  3579999999999999999999985322211  1 11112   223788888


Q ss_pred             ccccccC----CceEEEEEeeCCCCCcchhhHHHHHHHH--------------------hhhcCCCCchHHHHHHHHHhh
Q 042445           78 SKRGIVP----GLRLGWLVTSDPNGILQDSGIVDSIKIF--------------------LNISSDPATFIQGAVPQILEK  133 (246)
Q Consensus        78 sK~~~~~----g~r~G~i~~~~~~~~~~~~~~~~~l~~~--------------------~~~~~~~~~~~q~~~~~~l~~  133 (246)
                      .|.|++|    |-.+|++.+.+        ++.+.+...                    +.-.++.+.....++..++..
T Consensus       270 hK~l~~P~g~Ggp~~G~l~~~~--------~~~~~lp~~~v~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~  341 (481)
T PRK04366        270 HKTFSTPHGGGGPGSGPVGVKE--------ELAPFLPVPVVEKDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRS  341 (481)
T ss_pred             hhhcCCCCCCCCCCeeeeeehh--------hhHhhCCCCeeeccCCceeecccccccCCCcccccCchHHHHHHHHHHHH
Confidence            9987754    34578887776        555444200                    000001122333444445554


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceE--EEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCc
Q 042445          134 TEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMF--VMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITV  211 (246)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f  211 (246)
                      ...+-+++..++..++.+++.+.|+++..+. +  + +..+  +.+.++.-..++.  +...+.+.|.++||.+. +..+
T Consensus       342 ~G~~Gl~~~a~~~~~~a~~l~~~L~~~~~~~-~--~-~~~~~~~~~~~~~~~~~g~--~~~~v~~~L~~~Gi~~~-~~~~  414 (481)
T PRK04366        342 LGAEGLREVSEDAVLNANYLKARLKDIYDLP-Y--D-RPCMHEFVLSGKKLKETGV--RTLDIAKRLLDYGFHPP-TIYF  414 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhCccc-C--C-CCeeEEEEEECccccccCC--CHHHHHHHHHHCCccCC-cccc
Confidence            3455677777777888889999998752332 1  1 1222  2222211011111  34455667778998755 2222


Q ss_pred             C-C-CCeEEEEeec--ChHHHHHHHHHHHHHHHHHh
Q 042445          212 G-L-KDWLRITFAV--EPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       212 ~-~-~~~iRls~~~--~~~~l~~~~~~l~~~~~~~~  243 (246)
                      . . .+.+|++++.  +.++++..++.|.+..++..
T Consensus       415 p~~~~~~l~is~~e~~t~edid~l~~~l~~i~~~~~  450 (481)
T PRK04366        415 PLIVPEALMIEPTETESKETLDAFIAAMKQIAEEAK  450 (481)
T ss_pred             ccccCCeEEEcccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            2 2 6789999984  88999999999988877654

>PRK07046 aminotransferase; Validated

Probab=99.41  E-value=2.4e-11  Score=105.28  Aligned_cols=200  Identities=9%  Similarity=0.070  Sum_probs=123.1

Q ss_pred             cCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCCCcc
Q 042445           22 SGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQ  101 (246)
Q Consensus        22 ~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~  101 (246)
                      ...+.++++++.++|++||+++|.||+.+ +..+-........+.+  .   +-+++|.++ .|+.+|.+++++      
T Consensus       234 ~~p~~~fl~~lr~lc~~~g~llI~DEV~t-fr~g~Gg~~~~~gv~P--D---i~t~gK~lg-gG~Pi~av~g~~------  300 (453)
T PRK07046        234 VLPEPGFHEALRELTRRYGTLLVIDETHT-ISSGPGGYTRAHGLEP--D---FLVVGKPIA-GGVPCAVYGFSA------  300 (453)
T ss_pred             cCCCHHHHHHHHHHHHHhCCEEEEEcccc-CccCCcchhHHhCCCc--c---ceeehhhhc-CCCcceeeeehH------
Confidence            45566899999999999999999999987 4322112211112222  2   446899965 579999999988      


Q ss_pred             hhhHHHHHHHH----------hhhcCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCC
Q 042445          102 DSGIVDSIKIF----------LNISSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADKCCDRLKEIPCITCPKKPE  170 (246)
Q Consensus       102 ~~~~~~~l~~~----------~~~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~  170 (246)
                        ++++.+...          ...+++.||++.+++.+.|+... ++.+++..+.-...++.+.+..++.+ +...+...
T Consensus       301 --~i~~~~~~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~-~~~~v~g~  377 (453)
T PRK07046        301 --ELAERAQAAKASAPPGHSGIGTTLSANALAMAAMRATLAEVMTEAAYAHMLALAARLAAGLRAVIARHG-LPWHVTRV  377 (453)
T ss_pred             --HHHHHHhhccccCCCCCceeCCCCcccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhCC-CCeEEEEe
Confidence              888877531          22355789999999999887432 23344444443344444444444442 22112223


Q ss_pred             CceEEEEEeccccccCC-----C-C--hHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHHHHHH
Q 042445          171 GSMFVMVKLNYSLLEGI-----N-S--DMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       171 ~g~~~~~~~~~~~~~~~-----~-~--~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~~~~  242 (246)
                      |.+ +.+.+......+.     . +  -...+...+.++||.+.|.     .+.++++...++++++++++++.+++++.
T Consensus       378 G~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~-----~~~~~~~p~~t~~did~~~~~~~~~l~~~  451 (453)
T PRK07046        378 GAR-VEFQFAPTPPRNGAEAAAALDPELEAALHLYLLNRGVLITPF-----HNMMLVCPATTAADVDRLVAAFDACLGEL  451 (453)
T ss_pred             CcE-EEEEEeCCCCCCHHHHhcccCHHHHHHHHHHHHHCCCEEecc-----cCcEEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence            333 3444422110000     0 0  1123344566789998873     24678888789999999999999999765


Q ss_pred             h
Q 042445          243 A  243 (246)
Q Consensus       243 ~  243 (246)
                      .
T Consensus       452 ~  452 (453)
T PRK07046        452 L  452 (453)
T ss_pred             h
Confidence            3

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=99.41  E-value=3.9e-11  Score=101.81  Aligned_cols=206  Identities=20%  Similarity=0.252  Sum_probs=116.3

Q ss_pred             hhhhhhhccc--cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcc-cCCCCCccccccCCcccEEEEcccc
Q 042445            2 ELINQDITRE--FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLA-FGNTPFVSMGVFGSIVPLLTLGSIS   78 (246)
Q Consensus         2 e~~~~~~~~~--~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~-~~~~~~~~~~~~~~~~~~i~~~s~s   78 (246)
                      +.+++.++++  .+ .|+||+|...+   +++|.++|++||++||+|++|+.+. +.+....+   +.      .+++||
T Consensus       110 ~~le~~i~~~tk~I-ip~~~~G~~~d---~~~I~~la~~~~i~vIeDaa~~~g~~~~~~~~g~---~~------~~~~fS  176 (376)
T TIGR02379       110 TLIESAITHRTKAI-VPVHYAGVACD---MDTIMALANKHQLFVIEDAAQGVMSTYKGRALGS---IG------HLGTFS  176 (376)
T ss_pred             HHHHHhcCcCceEE-EEeCCCCCccC---HHHHHHHHHHCCCEEEEECccccCCccCCcccCC---CC------CEEEEe
Confidence            3455666654  22 37789999876   7799999999999999999999765 55432211   11      233444


Q ss_pred             ----cccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcC----------------------CCCchHHHHHHHHHh
Q 042445           79 ----KRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISS----------------------DPATFIQGAVPQILE  132 (246)
Q Consensus        79 ----K~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~----------------------~~~~~~q~~~~~~l~  132 (246)
                          |.+ .+|.+.|+++++++       ++.++++..+..+.                      .++.+. +++  .+.
T Consensus       177 f~~~K~l-~~g~~gG~v~~~~~-------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~n~~~~~~~-Aa~--g~~  245 (376)
T TIGR02379       177 FHETKNY-TSGGEGGALLINDQ-------AFIERAEIIREKGTNRSQFFRGEVDKYTWRDIGSSYLPSELQ-AAY--LWA  245 (376)
T ss_pred             CCCCCcC-cccCCceEEEECCH-------HHHHHHHHHHHhCCCCccccccCCCcceeeeecccCCccHHH-HHH--HHH
Confidence                885 56778899999864       78888876643211                      111122 111  111


Q ss_pred             hchHHHHHHHHHHHHHHHHHHHHHhhcCC--C-CccccCCCC---c-eEEEEEeccccccCCCChHHHHHHHHHhcCeEE
Q 042445          133 KTEEEFFSKIIDILRETADKCCDRLKEIP--C-ITCPKKPEG---S-MFVMVKLNYSLLEGINSDMEFALKLAKEESVIV  205 (246)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--~-~~~~~~~~~---g-~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v  205 (246)
                        ....+++..+.-++..+...+.|..++  + +.....+.+   . +++++.++...      +.+.+.+.|+++||.+
T Consensus       246 --qL~~l~~~~~~r~~~~~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~r~~l~~~L~~~gI~~  317 (376)
T TIGR02379       246 --QLEQADRINQDRLATWQLYQDALKPLEEKGIIELPSIPNGCQHNAHMFYIKLKDED------DRNELIKYLKEQEIMA  317 (376)
T ss_pred             --HHHHhHHHHHHHHHHHHHHHHHhccCCcCCeeeCCCCCCCCeeeeEEEEEEECCcC------CHHHHHHHHHHCCCCc
Confidence              122344444444444444555555432  1 111111222   1 23345554321      4566677888999988


Q ss_pred             ecCCC----cC------C------------CCeEEEEeec--ChHHHHHHHHHHHHHH
Q 042445          206 LPGIT----VG------L------------KDWLRITFAV--EPSALENGLGRMKAFY  239 (246)
Q Consensus       206 ~pg~~----f~------~------------~~~iRls~~~--~~~~l~~~~~~l~~~~  239 (246)
                      .++..    +.      .            .+.+.+-+..  ++++++..++.|++++
T Consensus       318 ~~~~~p~~~~~~~~~~~~~~~~~p~~~~~~~~~l~LP~~~~l~~~~~~~i~~~i~~~~  375 (376)
T TIGR02379       318 VFHYVPLHSSPAGRYFGRFHGEDIYTTKESERLVRLPLYYGLSKEDQARVIQTICDYL  375 (376)
T ss_pred             cccCcCCCcchhHHhhCCCCCCChHHHHHHhceEEccCCCCCCHHHHHHHHHHHHHHh
Confidence            74321    10      0            2345454443  7888888888888764

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.41  E-value=1.3e-11  Score=106.21  Aligned_cols=200  Identities=12%  Similarity=0.021  Sum_probs=124.2

Q ss_pred             cc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCCC
Q 042445           21 GS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGI   99 (246)
Q Consensus        21 G~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~   99 (246)
                      |. ..+++++++|.++|++||+++|.||++.++ ..+... ....++-...+   -+++|.++ .|+.+|++++++    
T Consensus       215 G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~-R~G~~g-a~~~~gv~PDi---~~~gK~lg-gG~p~~av~~~~----  284 (433)
T PRK00615        215 GVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGF-RVAQGG-AAAIYHVKPDI---TVYGKILG-GGLPAAAVVAHK----  284 (433)
T ss_pred             CcccCCHHHHHHHHHHHHHcCCEEEEEcccccc-cccHhH-HHHhcCCCCCe---EEEccccc-CCcceeeeeecH----
Confidence            54 446789999999999999999999999877 344222 22222222223   35899975 568899999998    


Q ss_pred             cchhhHHHHHHHH----hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh----hcCCCCccccCCCC
Q 042445          100 LQDSGIVDSIKIF----LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRL----KEIPCITCPKKPEG  171 (246)
Q Consensus       100 ~~~~~~~~~l~~~----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L----~~~~~~~~~~~~~~  171 (246)
                          ++++.+...    ...+++.+|+..+++.+.|+...+   +...+.++++-+.+.+.|    ++. ++. +.....
T Consensus       285 ----~i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i~~---~~~~~~~~~~g~~l~~~l~~~~~~~-g~~-v~~~r~  355 (433)
T PRK00615        285 ----SIMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCRE---QGFYTQLSTLEQNFLSPIEEMIRSQ-GFP-VSLVRY  355 (433)
T ss_pred             ----HHHhhhcCCCCcccCCCCcccHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHHHHHHc-CCC-eEEEee
Confidence                888887532    223446799999999888874321   122333444444443333    332 222 111124


Q ss_pred             ceEEEEEeccccc---cCC----CChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHHHHHHh
Q 042445          172 SMFVMVKLNYSLL---EGI----NSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       172 g~~~~~~~~~~~~---~~~----~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~~~~~  243 (246)
                      |.++.+.+.....   ...    ......+...+.++||.+.|....   .++ +|...+++++++.++.+.+++++..
T Consensus       356 G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~---~~~-ls~~ht~~did~~~~a~~~~~~~~~  430 (433)
T PRK00615        356 GSMFSFFFNENRPNNLAEAQLSDIEAFQTFYQSAFSKGVYLSPSPFE---ASF-LSSAHSMENLDYAQNVLIDSLEKVF  430 (433)
T ss_pred             ceEEEEEEeCCCCCChHHHhhCCHHHHHHHHHHHHHCCeeecCcccc---ccc-eecCCCHHHHHHHHHHHHHHHHHHh
Confidence            6666666753210   000    011234566677899998875421   112 5666699999999999999998764

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=99.40  E-value=2.6e-11  Score=104.71  Aligned_cols=187  Identities=13%  Similarity=0.164  Sum_probs=114.4

Q ss_pred             CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCCCcch
Q 042445           23 GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQD  102 (246)
Q Consensus        23 ~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~~  102 (246)
                      ..+++++++|.++|++||+++|+||+++++...|..+ ....++-...++   +++|.+ ..+   |++ +.+       
T Consensus       235 ~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~-a~~~~gv~PDi~---~~gK~~-~~~---g~~-~~~-------  298 (431)
T TIGR03251       235 HFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAW-AYQQLGVQPDIV---AFGKKT-QVC---GIM-AGR-------  298 (431)
T ss_pred             CCCHHHHHHHHHHHHHcCCEEEEecchhccCccchHH-HHHhcCCCCCEE---EecccC-ccc---eEE-ecc-------
Confidence            4677999999999999999999999999887765432 222222222333   478885 222   444 433       


Q ss_pred             hhHHHHHH------HHhhhcCCCCchHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEE
Q 042445          103 SGIVDSIK------IFLNISSDPATFIQGAVPQILEKTEE-EFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFV  175 (246)
Q Consensus       103 ~~~~~~l~------~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~  175 (246)
                       ++.+...      .....+++.|+++..++.+.|+...+ ..+++.++.-+..++.+.+..++.+++...+... |.++
T Consensus       299 -~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vrg~-G~~~  376 (431)
T TIGR03251       299 -RVDEVADNVFAVPSRLNSTWGGNLVDMVRATRILEIIEEERLVDNARVQGAHLLARLHELAAEFPHLVSNPRGR-GLMC  376 (431)
T ss_pred             -hHHHhhhhcccCccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCccceeccccc-ceeE
Confidence             3211111      11223457899999999998885332 2334444444444444444334454232222333 6666


Q ss_pred             EEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHH
Q 042445          176 MVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKA  237 (246)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~  237 (246)
                      .++++...      ....+...+.++||.+.|..    .+.+||++..  ++++++++++.|.+
T Consensus       377 ~i~~~~~~------~~~~~~~~l~~~Gvl~~~~g----~~~lr~~P~l~~t~~eid~~l~~l~~  430 (431)
T TIGR03251       377 AFDLPSTA------DRDEVIRQLYREGVLLLGCG----ERSIRFRPPLTVTREEIDAAIDAIRR  430 (431)
T ss_pred             EEEeCCHH------HHHHHHHHHHhCCeEEecCC----CCeEEEECCccCCHHHHHHHHHHHHh
Confidence            67775431      34445566778999998753    3678988774  89999999998875

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.40  E-value=6.9e-11  Score=101.80  Aligned_cols=150  Identities=15%  Similarity=0.147  Sum_probs=99.2

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      |.+++.++++    ++..+.||+|.+.+   +++|.++|+++|+++|+|.+++.....    .++ .++   --+++.|+
T Consensus       146 e~l~~~l~~~tk~V~~e~~~Np~~~v~d---i~~I~~la~~~gi~livD~t~a~g~~~----~p~-~~G---aDivv~S~  214 (437)
T PRK05613        146 ESWQAAVQPNTKAFFGETFANPQADVLD---IPAVAEVAHRNQVPLIVDNTIATAALV----RPL-ELG---ADVVVASL  214 (437)
T ss_pred             HHHHHhCCccCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCeEEEECCCcccccc----ChH-HhC---CCEEEeec
Confidence            4556666654    66688999998877   889999999999999999998753321    111 122   23889999


Q ss_pred             ccccccCCceEEEEEeeCCC-C---------C------------------cchhhHHHHHH--HHhhhcCCCCchHHHHH
Q 042445           78 SKRGIVPGLRLGWLVTSDPN-G---------I------------------LQDSGIVDSIK--IFLNISSDPATFIQGAV  127 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~-~---------~------------------~~~~~~~~~l~--~~~~~~~~~~~~~q~~~  127 (246)
                      +|.++..|--+|.+++.+.. .         .                  .....+..+.+  .....+..++|...+.+
T Consensus       215 ~K~l~G~gd~~gG~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~  294 (437)
T PRK05613        215 TKFYTGNGSGLGGVLIDGGKFDWTVERDGKPVFPYFVTPDPAYHGLKYADLGAPAFGLKARAGLLRDTGATLSPFNAWVT  294 (437)
T ss_pred             cceecCCCcceeEEEEecCcccccccccccccCCCCCCCccccccccccccchHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            99998887666666553210 0         0                  00000111111  12334557788888888


Q ss_pred             HHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccc
Q 042445          128 PQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPK  167 (246)
Q Consensus       128 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~  167 (246)
                      .+-|+.     +..+.++..+++..+.+.|+++|.+..+.
T Consensus       295 ~rgl~T-----L~lR~~~~~~nA~~lA~~L~~hp~V~~V~  329 (437)
T PRK05613        295 AQGLDT-----LSLRLERHNENAIKVAEFLNNHEKVAKVN  329 (437)
T ss_pred             HcccCc-----HHHHHHHHHHHHHHHHHHHHcCCCcceEE
Confidence            777774     66777777899999999999988765433

>PLN03226 serine hydroxymethyltransferase; Provisional

Probab=99.40  E-value=3.7e-11  Score=104.50  Aligned_cols=198  Identities=13%  Similarity=0.076  Sum_probs=128.1

Q ss_pred             CccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccccccc-ccCCceEEEEEeeCCCC
Q 042445           20 VGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRG-IVPGLRLGWLVTSDPNG   98 (246)
Q Consensus        20 tG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~g~r~G~i~~~~~~~   98 (246)
                      +|...+   +++|.++|+++|+++++|+++.............  ++.  --++++|++|.+ |..|   |++++++   
T Consensus       194 ~s~~~D---~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~p--~~~--~Div~~t~hK~L~GP~G---g~I~~~~---  260 (475)
T PLN03226        194 YPRDWD---YARMRKIADKVGALLMCDMAHISGLVAAQEAASP--FEY--CDVVTTTTHKSLRGPRG---GMIFFRK---  260 (475)
T ss_pred             CCCccC---HHHHHHHHHHcCCEEEEEchhhhCcccCCCCCCC--CCC--CeEEEecCcccccCCCc---eEEEEch---
Confidence            455544   7789999999999999999999766544322111  111  228899999997 4555   8888866   


Q ss_pred             CcchhhHH-----------H---HHHHHh--hhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 042445           99 ILQDSGIV-----------D---SIKIFL--NISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPC  162 (246)
Q Consensus        99 ~~~~~~~~-----------~---~l~~~~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~  162 (246)
                           +..           +   .+....  .+.+++++...+++..++........++.+++..++.+.+.+.|.+. |
T Consensus       261 -----~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i~~~~~~~~~~~~~~na~~L~~~L~~~-G  334 (475)
T PLN03226        261 -----GPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKAYQKQVKANAAALANRLMSK-G  334 (475)
T ss_pred             -----hhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHhC-C
Confidence                 322           2   122221  12324455555555556664322334667888899999999999885 7


Q ss_pred             CccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcC-----CCCeEEEEee------cChHHHHHH
Q 042445          163 ITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG-----LKDWLRITFA------VEPSALENG  231 (246)
Q Consensus       163 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~-----~~~~iRls~~------~~~~~l~~~  231 (246)
                      +..+........+++++....+     +...+...|.+.||.+..+.-++     .+..+|++..      .++++++++
T Consensus       335 ~~l~~~~t~~hi~lv~~~~~gi-----~~~~~~~~L~~~~I~~nk~~~p~~~~~~~~~giRiGt~~lt~~g~~~~d~~~i  409 (475)
T PLN03226        335 YKLVTGGTDNHLVLWDLRPLGL-----TGSRVEKVLDLAHITLNKNAVPGDSSALVPGGVRIGTPAMTSRGLVEKDFEKV  409 (475)
T ss_pred             CEEEcCCCCCCEEEEEccCCCC-----CHHHHHHHHHHCCCEECCCCCCCCcccCCCCCcccCcHHHHHCCCCHHHHHHH
Confidence            7643322335677777743321     44556778889999997654222     1677998433      378899999


Q ss_pred             HHHHHHHHHH
Q 042445          232 LGRMKAFYDR  241 (246)
Q Consensus       232 ~~~l~~~~~~  241 (246)
                      .+.|.++++.
T Consensus       410 a~~i~~~~~~  419 (475)
T PLN03226        410 AEFLHRAVTI  419 (475)
T ss_pred             HHHHHHHHHH
Confidence            9999998873

>KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism]

Probab=99.40  E-value=1.5e-11  Score=97.01  Aligned_cols=202  Identities=12%  Similarity=0.111  Sum_probs=127.9

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccC--CcccCCCCCccccccCCcccEEEEcccccccccCCceEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYG--HLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLG   89 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~--~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G   89 (246)
                      +-|.+||-.|.++|.+++.++.++|++|++.+..|.+--  ...-.+   .++..+...-..+.+ .+||.+|+|   +|
T Consensus       160 lENT~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi~NAavasg---V~vk~i~~~fDSVsi-CLSKglgAP---VG  232 (384)
T KOG1368|consen  160 LENTHNNCGGKVLPLEELDRVKALAKRHGLKLHMDGARIFNAAVASG---VPVKKICSAFDSVSI-CLSKGLGAP---VG  232 (384)
T ss_pred             eeccccccCceEeeHHHHHHHHHHHhccCCeeecchhhhhhHHHHcC---CCHHHHHHhhhhhhh-hhhccCCCC---cc
Confidence            445554555599999999999999999999999998532  222112   122222221122333 489998655   68


Q ss_pred             EEEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccC
Q 042445           90 WLVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKK  168 (246)
Q Consensus        90 ~i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~  168 (246)
                      .++..+.       +++++.+.. ...+.++-..+..++++..+  .++... ..+.-.+++..+.+.++..+.+..-++
T Consensus       233 SViVG~k-------~FI~kA~~~RKalGGGmRQsGvLaaaaLva--l~~~~~-~L~~dHk~A~~lAe~~~~~~~i~v~v~  302 (384)
T KOG1368|consen  233 SVIVGSK-------DFIDKARHFRKALGGGMRQSGVLAAAALVA--LDENVP-LLRADHKRAKELAEYINTPEEIRVEVP  302 (384)
T ss_pred             cEEEccH-------HHHHHHHHHHHHhcCchhHHHHHHHHHHHH--hhcchH-HHHHHHHHHHHHHHHhccccceeeecc
Confidence            8766553       888887765 33444444444444444443  111122 222334566667777776655663233


Q ss_pred             CCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHH
Q 042445          169 PEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFY  239 (246)
Q Consensus       169 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~  239 (246)
                      .-..+++.+.+....+     +.+.+.+.++++||.+.++.    ...+|+.+..  ++++++.....+.+.+
T Consensus       303 a~etNiv~~~l~q~~~-----~~~~l~~~~~k~gi~lm~~~----s~r~Rivlh~Qvt~~~ve~~~~~~~k~~  366 (384)
T KOG1368|consen  303 AVETNIVNMVLCQARL-----TAEELCKFLEKNGILLMGGA----SRRIRIVLHHQVTDEDVEYVKSVLSKKF  366 (384)
T ss_pred             hhhcceeeeecccccC-----CHHHHHHHHHHCCeEEeecc----ccceEEEEEEecCHHHHHHHHHHHHHHH
Confidence            3557777776765543     55666677889999999877    4568999885  9999999999885444

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=99.37  E-value=2.7e-11  Score=104.58  Aligned_cols=195  Identities=13%  Similarity=0.122  Sum_probs=116.5

Q ss_pred             ccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCCCc
Q 042445           21 GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGIL  100 (246)
Q Consensus        21 G~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~  100 (246)
                      |...+.+++++|.++|++||+++|+||++.++.+.+........+.+     -+.+++|.++ .|+.+|++++++     
T Consensus       198 g~~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~~g~~~~~gv~P-----Di~t~gK~lg-gG~p~~av~~~~-----  266 (431)
T PRK06209        198 ADEPQDGFLHEVRRLCHENGALFILDEMITGFRWHMRGAQKLYGIVP-----DLSCFGKALG-NGFAVSALAGKR-----  266 (431)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCEEEEEcccccCCcCcchhhHHhCCCc-----ceeeehhhhc-CCcccEEEEEHH-----
Confidence            44677899999999999999999999999877543211111112222     2577899976 468899999988     


Q ss_pred             chhhHHHH--HHH---H----hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhh----cCCCCcccc
Q 042445          101 QDSGIVDS--IKI---F----LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLK----EIPCITCPK  167 (246)
Q Consensus       101 ~~~~~~~~--l~~---~----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~----~~~~~~~~~  167 (246)
                         ++++.  +..   .    ...+++.||+..+++.+.|+...+.   ...+.++++-+.+.+.|+    +++ +...+
T Consensus       267 ---~i~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~~~~~~~-~~~~v  339 (431)
T PRK06209        267 ---EYMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYRDE---DVIERLHEQGAKLAAGVNEAAAEHG-LQDHV  339 (431)
T ss_pred             ---HHHhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHHHHHHHHHhCC-CCeEE
Confidence               77775  311   1    1234467788888888887743221   123344444444444443    343 22112


Q ss_pred             CCCCceEEEEEeccccccCCCCh--HHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHHHHHHh
Q 042445          168 KPEGSMFVMVKLNYSLLEGINSD--MEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       168 ~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~~~~~  243 (246)
                      ...|.+..+.-+....- +....  ...+...+.++||.+.|         ++++...++++++++++.+.+++++..
T Consensus       340 r~~G~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~Gi~~p~---------l~is~~ht~~dId~~l~~l~~~l~~~~  407 (431)
T PRK06209        340 RVSGRPCCLTYSTLDGN-GQPSQAFRTLFLQETIRRGVLMPS---------LVVSYAHGDADIERTIDAVHGALGVYR  407 (431)
T ss_pred             EeecceEEEEEecCCcc-cCCcHHHHHHHHHHHHHCCccccc---------ccccccCCHHHHHHHHHHHHHHHHHHH
Confidence            22333333322211100 00011  12344557788997622         356655699999999999999998763

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=99.37  E-value=8.1e-11  Score=100.04  Aligned_cols=210  Identities=17%  Similarity=0.214  Sum_probs=120.4

Q ss_pred             hhhhhhhccc---cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcc-cCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE---FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLA-FGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~---~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~-~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.++++   ++  +.||+|...+   +++|.++|+++|++||+|++|+.+. +++.+.   ..++.    +.+.||
T Consensus       110 ~~le~~i~~~tk~i~--~~~~~G~~~~---~~~i~~la~~~~i~vIeD~a~a~g~~~~~~~~---g~~~~----~~~~Sf  177 (375)
T PRK11706        110 TLIEAAITPKTRAIV--PVHYAGVACE---MDTIMALAKKHNLFVVEDAAQGVMSTYKGRAL---GTIGH----IGCFSF  177 (375)
T ss_pred             HHHHHhcCCCCeEEE--EeCCCCCccC---HHHHHHHHHHcCCEEEEECccccccccCCeee---ecCcC----EEEEeC
Confidence            4556666554   22  3468998755   7899999999999999999999776 443322   12211    223333


Q ss_pred             c--cccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhc------------------CCCCchHHHHHHHHHhhchHH
Q 042445           78 S--KRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNIS------------------SDPATFIQGAVPQILEKTEEE  137 (246)
Q Consensus        78 s--K~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~------------------~~~~~~~q~~~~~~l~~~~~~  137 (246)
                      .  |.++ +|.+.++++.++        ++.++++.....+                  .+.|...+...+++... ...
T Consensus       178 ~~~K~l~-~g~gG~~~~~~~--------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~-ql~  247 (375)
T PRK11706        178 HETKNYT-AGEGGALLINDP--------ALIERAEIIREKGTNRSQFFRGQVDKYTWVDIGSSYLPSELQAAYLWA-QLE  247 (375)
T ss_pred             CCCcccc-ccCCeEEEECCH--------HHHHHHHHHHHcCCCcchhhccCCCcceeeecccccCcCHHHHHHHHH-HHH
Confidence            3  9974 477767776665        7887776654211                  12333323333333221 223


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCC---CCccccCCCC----ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCC
Q 042445          138 FFSKIIDILRETADKCCDRLKEIP---CITCPKKPEG----SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGIT  210 (246)
Q Consensus       138 ~~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~  210 (246)
                      .+++..+.-+++.+.+.+.|++++   ++.....+.+    .+++++.++...      +.+.+.+.|.++||.+.....
T Consensus       248 ~l~~~~~~R~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~r~~l~~~L~~~gI~~~~~~~  321 (375)
T PRK11706        248 AADRINQRRLALWQRYYDALAPLAEAGRIELPSIPDDCKHNAHMFYIKLRDLE------DRSALINFLKEAGIMAVFHYI  321 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCcCCeeecCCCCCCCceeeEEEEEEECCcC------CHHHHHHHHHHCCCCccccCC
Confidence            456666666677777777777664   2331112222    335566565321      456667778899998753321


Q ss_pred             -----------------cCC-----CCeEEEEeec--ChHHHHHHHHHHHHHH
Q 042445          211 -----------------VGL-----KDWLRITFAV--EPSALENGLGRMKAFY  239 (246)
Q Consensus       211 -----------------f~~-----~~~iRls~~~--~~~~l~~~~~~l~~~~  239 (246)
                                       |..     .+.+-+-+..  ++++++..++.|++++
T Consensus       322 p~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~~  374 (375)
T PRK11706        322 PLHSSPAGERFGRFHGEDRYTTKESERLLRLPLFYNLTDVEQRTVIDTILEFF  374 (375)
T ss_pred             ccCcchhhHhcCCCCCCChHHHHHHhCcEeccCCCCCCHHHHHHHHHHHHHHh
Confidence                             000     2444444442  7888888888887764

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=99.36  E-value=6.7e-11  Score=99.00  Aligned_cols=199  Identities=15%  Similarity=0.137  Sum_probs=132.7

Q ss_pred             CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCCCcch
Q 042445           23 GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQD  102 (246)
Q Consensus        23 ~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~~  102 (246)
                      ...+++++.|.++|+++|+++|.||+..+|...-.+......+.++     +.+++|+ .+.|+.+|.+.+..       
T Consensus       217 ~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~gGaq~~~gi~PD-----lttlGKi-IGGGlP~ga~gGr~-------  283 (432)
T COG0001         217 PPEPGFLEGLRELTEEHGALLIFDEVITGFRVALGGAQGYYGVEPD-----LTTLGKI-IGGGLPIGAFGGRA-------  283 (432)
T ss_pred             CCCHHHHHHHHHHHHHcCcEEEEecchhhcccCCcccccccCcCcc-----hhhhhhh-hcCCcceeeeccHH-------
Confidence            4566899999999999999999999999888663344444445444     7789999 68999999999998       


Q ss_pred             hhHHHHHHHH----hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhh----cCCCCccccCCCCceE
Q 042445          103 SGIVDSIKIF----LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLK----EIPCITCPKKPEGSMF  174 (246)
Q Consensus       103 ~~~~~~l~~~----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~----~~~~~~~~~~~~~g~~  174 (246)
                       ++++.+...    ..-+++.||++..|..+.|+.-...  +...+++.+..+.|.+.|+    +. ++...+...+++|
T Consensus       284 -eiM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l~~~--~~~y~~l~~~~~~L~~gl~~~~~~~-g~~~~v~~~gsm~  359 (432)
T COG0001         284 -EIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEELMTE--EGVYERLDALGERLAEGLRAAAERH-GIPLTVNRVGSMF  359 (432)
T ss_pred             -HHHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHHHh-CCCeEEeeecceE
Confidence             888866543    2235588999999999888842210  0134444444555555444    33 4443344455665


Q ss_pred             EEEEecccccc--------CCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHHHHHHhh
Q 042445          175 VMVKLNYSLLE--------GINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRHAE  244 (246)
Q Consensus       175 ~~~~~~~~~~~--------~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~~~~~~  244 (246)
                      -+. +......        +...-.++.. .+.++||++.|+.+   ..++ +|...+++++++.++.+.+++++..+
T Consensus       360 ~i~-F~~~~~~n~~da~~sd~~~~~~~~~-~~l~~GV~l~ps~~---ea~f-lS~ahte~di~~~~~a~~~~~~~~~~  431 (432)
T COG0001         360 GIF-FTEEGVRNYADAKRSDVERFAKFFH-HLLNRGVYLAPSQF---EAGF-LSTAHTEEDIDRTLEAADEAFKELAG  431 (432)
T ss_pred             EEE-ecCCCCCCHHHHHhhchHHHHHHHH-HHHhCCcccCCccc---ccee-eecccCHHHHHHHHHHHHHHHHHhhc
Confidence            554 4321100        0000123344 67789999988642   2222 67778999999999999999887653

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.35  E-value=6.6e-11  Score=108.25  Aligned_cols=202  Identities=11%  Similarity=0.079  Sum_probs=130.9

Q ss_pred             CCCccC-CChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCC-ceEEEEEeeC
Q 042445           18 FHVGSG-FSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPG-LRLGWLVTSD   95 (246)
Q Consensus        18 NPtG~~-~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g-~r~G~i~~~~   95 (246)
                      .-.|.. ++++++++|.++|++||+++|.||++.+|...|..+ ....++-.   --+-+++|.+ ..| +.+|.+++++
T Consensus       596 GaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~~f-a~e~~gv~---PDIi~~gKgL-tgG~~Plaa~l~~~  670 (817)
T PLN02974        596 GAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVES-AWELLGCK---PDIACYAKLL-TGGLVPLAATLATE  670 (817)
T ss_pred             CCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccchh-hHHhcCCC---CCEEeecccc-cCCCCccEEEEEcH
Confidence            334665 567899999999999999999999999998877544 22223322   2255578995 567 6999999998


Q ss_pred             CCCCcchhhHHHHHHH-------HhhhcCCCCchHHHHHHHHHhhchH-HHHHHHHHHHHHHHH----HHHHHhhcCCCC
Q 042445           96 PNGILQDSGIVDSIKI-------FLNISSDPATFIQGAVPQILEKTEE-EFFSKIIDILRETAD----KCCDRLKEIPCI  163 (246)
Q Consensus        96 ~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~----~l~~~L~~~~~~  163 (246)
                              ++.+.+..       .+..+++.||++.+++.+.|+...+ .......+.-.+..+    .+.+.|.++|.+
T Consensus       671 --------~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~~~~~~~~l~~~~~~l~~~l~~~l~~~l~~~p~V  742 (817)
T PLN02974        671 --------EVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYKDPSTNPNLIPPGSRLRELWDEELVRAISSLPNV  742 (817)
T ss_pred             --------HHHHhhccccccCCcccCCCCCcCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCe
Confidence                    88887742       1345668999999999998885432 222222233233333    333444455544


Q ss_pred             ccccCCCCceEEEEEeccccc-cCC-CChHHHHHHHHH-hcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHH
Q 042445          164 TCPKKPEGSMFVMVKLNYSLL-EGI-NSDMEFALKLAK-EESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAF  238 (246)
Q Consensus       164 ~~~~~~~~g~~~~~~~~~~~~-~~~-~~~~~~~~~ll~-~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~  238 (246)
                      .. +. .-|.++-+++....- .+. ......+.+.+. ++||.++|..     +.+|+....  ++++++++++.|.+.
T Consensus       743 ~~-VR-g~Gl~~~iel~~~~~~~~~~~~~a~~v~~~~~~~~Gl~~r~~G-----nvi~l~pP~~i~~e~l~~~~~~l~~~  815 (817)
T PLN02974        743 ER-VV-SLGTVLALELDAEGSGSGYSSLYARSVVRRLRREDGIYARPLG-----NVVYLMCGPTTSPETCTRLLRKVYRR  815 (817)
T ss_pred             eE-EE-eeeeEEEEEEecCCcccccchHHHHHHHHHHHHhCCEEEEecC-----CEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            32 22 336777777754210 010 012234455566 8999998842     677876553  899999999999876


Q ss_pred             H
Q 042445          239 Y  239 (246)
Q Consensus       239 ~  239 (246)
                      +
T Consensus       816 ~  816 (817)
T PLN02974        816 L  816 (817)
T ss_pred             h
Confidence            5

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=99.35  E-value=2.2e-11  Score=105.27  Aligned_cols=191  Identities=13%  Similarity=0.079  Sum_probs=114.2

Q ss_pred             CccCC-ChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCC
Q 042445           20 VGSGF-SGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNG   98 (246)
Q Consensus        20 tG~~~-~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~   98 (246)
                      .|... +.+++++|.++|++||+++|.||++.++...|..+ ....++-. ...-+.+++|.++..|    ++++.+   
T Consensus       264 ~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG~~f-a~e~~gv~-~~PDi~t~gK~lg~gG----~~~~~~---  334 (464)
T TIGR00699       264 GGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGKFW-AHEHWNLD-DPPDMVTFSKKFQTAG----YFFHDP---  334 (464)
T ss_pred             CCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCcchh-HHHhcCCC-CCCCEEEehhhhccCC----ccccch---
Confidence            35554 78999999999999999999999999887655432 22222211 0022466789975445    333332   


Q ss_pred             CcchhhHHHHHH-HHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhh----cCCC-CccccC-CCC
Q 042445           99 ILQDSGIVDSIK-IFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLK----EIPC-ITCPKK-PEG  171 (246)
Q Consensus        99 ~~~~~~~~~~l~-~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~----~~~~-~~~~~~-~~~  171 (246)
                           . +.... .....+++.||++.+++.+.|+...+.   ...+..++.-+.+.+.|+    ++|. +.. +. ..-
T Consensus       335 -----~-~~~~~~~~~~~T~~gnp~~~aaa~a~L~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~-vRg~G~  404 (464)
T TIGR00699       335 -----A-FRPNKPYRQFNTWMGDPSRALILREIIQEIKRK---DLLENVAHVGDYLYTGLEDLQKKYPEFIQN-LRGKGR  404 (464)
T ss_pred             -----h-ccCCCCcccccCCCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHhCCCceee-ecccCe
Confidence                 2 11111 113345578999999998888743221   122222233333333333    3442 221 22 123


Q ss_pred             ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHH
Q 042445          172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFY  239 (246)
Q Consensus       172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~  239 (246)
                      |+++-++++...      ....+.+.+.++||++.+..    .+.+||+...  +++++++++++|.+++
T Consensus       405 Glm~gie~~~~~------~~~~i~~~~~~~Gvl~~~~g----~~~ir~~Ppl~it~~eid~~~~~l~~~~  464 (464)
T TIGR00699       405 GTFIAWDTPDEA------KRDKLLKKARNNGVNIGGCG----VKAIRLRPMLVFQKHHADIFLEIISKII  464 (464)
T ss_pred             EEEEEEecCCHH------HHHHHHHHHHHCCcEEecCC----CCeEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence            666666664321      24455666778999997642    4789999874  9999999999998763

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=99.34  E-value=2.2e-10  Score=97.54  Aligned_cols=215  Identities=13%  Similarity=0.146  Sum_probs=119.4

Q ss_pred             hhhhhhhccc--cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCc-ccCCCCCccccccCCcccEEEEcccc
Q 042445            2 ELINQDITRE--FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHL-AFGNTPFVSMGVFGSIVPLLTLGSIS   78 (246)
Q Consensus         2 e~~~~~~~~~--~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~-~~~~~~~~~~~~~~~~~~~i~~~s~s   78 (246)
                      +.+++.++++  .+ .|+||+|...+   +++|.++|+++|+++|+|++|+.. .+.+...      +....  .+.||+
T Consensus       112 ~~l~~~i~~~tkav-~~~~~~G~~~d---~~~i~~~a~~~gi~vi~D~a~a~g~~~~~~~~------g~~g~--~~~Sf~  179 (379)
T PRK11658        112 EAIEAAITPRTKAI-IPVHYAGAPAD---LDAIRAIGERYGIPVIEDAAHAVGTYYKGRHI------GARGT--AIFSFH  179 (379)
T ss_pred             HHHHHhcccCCeEE-EEeCCCCCcCC---HHHHHHHHHHcCCeEEEECCCccCCeECCeec------CCCCC--EEEeCC
Confidence            3455666554  22 27789999765   788999999999999999999843 3433211      22111  355666


Q ss_pred             cccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCch--------------------HHHHHHHHHhhchHHH
Q 042445           79 KRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATF--------------------IQGAVPQILEKTEEEF  138 (246)
Q Consensus        79 K~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------------------~q~~~~~~l~~~~~~~  138 (246)
                      +...+++.+.|++++++.       ++.++++.....+...++.                    ....+.+++.......
T Consensus       180 ~~K~l~~g~GG~v~~~~~-------~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~G~n~~~~~l~AAl~~~ql~~  252 (379)
T PRK11658        180 AIKNITCAEGGLVVTDDD-------ELADRLRSLKFHGLGVDAFDRQTQGRAPQAEVLTPGYKYNLADINAAIALVQLAK  252 (379)
T ss_pred             CCCcCcccCceEEEECCH-------HHHHHHHHHHHcCCCcchhhhhcccCCCcceeeccccccCcCHHHHHHHHHHHHH
Confidence            444456667898888653       7777776543211000000                    0011112222112345


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCccccCCC----CceEE-EEEeccccccCCCChHHHHHHHHHhcCeEEecCCC---
Q 042445          139 FSKIIDILRETADKCCDRLKEIPCITCPKKPE----GSMFV-MVKLNYSLLEGINSDMEFALKLAKEESVIVLPGIT---  210 (246)
Q Consensus       139 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~----~g~~~-~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~---  210 (246)
                      +++..+.-++..+.+.+.|++++... +..|.    ..+++ .+.++... .+.  +.+.+.+.|+++||.+.+...   
T Consensus       253 l~~~~~~r~~~a~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~--~r~~~~~~L~~~gI~~~~~~~~~~  328 (379)
T PRK11658        253 LEALNARRREIAARYLQALADLPFQP-LSLPAWPHQHAWHLFIIRVDEER-CGI--SRDALMEALKERGIGTGLHFRAAH  328 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCcc-CcCCCCCCceeEEEEEEEECCcc-ccC--CHHHHHHHHHHCCCCCcccCcCcc
Confidence            66666666777777788887775332 22222    12222 23443211 011  345566677899987663210   


Q ss_pred             -------------cCC-----CCeEEEEee--cChHHHHHHHHHHHHHH
Q 042445          211 -------------VGL-----KDWLRITFA--VEPSALENGLGRMKAFY  239 (246)
Q Consensus       211 -------------f~~-----~~~iRls~~--~~~~~l~~~~~~l~~~~  239 (246)
                                   |..     .+.+.+-+.  .++++++..++.|++++
T Consensus       329 ~~~~~~~~~~~~~~p~~~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~~  377 (379)
T PRK11658        329 TQKYYRERFPTLSLPNTEWNSERICSLPLFPDMTDADVDRVITALQQIA  377 (379)
T ss_pred             cChhhhccCCCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHH
Confidence                         001     244444444  27888888888888765

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=99.33  E-value=7.5e-11  Score=95.86  Aligned_cols=194  Identities=15%  Similarity=0.153  Sum_probs=117.9

Q ss_pred             CCCccCCChhhHHHHHHHHHHcCCEEEEcccc--CCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeC
Q 042445           18 FHVGSGFSGSFVSPIAETAKKLGIMVIANEVY--GHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSD   95 (246)
Q Consensus        18 NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y--~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~   95 (246)
                      |-.|+++|.+++++|.++|+++|+.+..|-+=  ......+   .+...+.....+++++ +||..+.|+   |.++..+
T Consensus       141 te~GtVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg---~~~~~~~~~~D~v~~~-~tK~g~~~~---gAiv~gn  213 (342)
T COG2008         141 TEGGTVYPLDELEAISAVCKEHGLPLHMDGARLANALVALG---VALKTIKSYVDSVSFC-LTKGGGAPV---GAIVFGN  213 (342)
T ss_pred             CCCceecCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcC---CCHHHHHhhCCEEEEe-cccCCccee---eeEEEcC
Confidence            56699999999999999999999999999852  2222222   2333333333455554 899965565   9988877


Q ss_pred             CCCCcchhhHHHHHHHHhh-hcCCC--CchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCc
Q 042445           96 PNGILQDSGIVDSIKIFLN-ISSDP--ATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGS  172 (246)
Q Consensus        96 ~~~~~~~~~~~~~l~~~~~-~~~~~--~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g  172 (246)
                      .       ++++.++.... .+...  +.+.-+....+|++  +-|.. ....-.+.++.|.+.|+..+|+. ...|...
T Consensus       214 ~-------~~~~~a~~~rK~~Ggl~~k~r~laA~~~~~l~~--~~~~~-~~~Han~mA~~La~~~~~~~G~~-~~~~~~t  282 (342)
T COG2008         214 R-------DFAKRARRWRKRAGGLMRKARFLAAQGLYALED--DVWRL-AADHANAMAARLAEGLEAKPGVK-LAFPVET  282 (342)
T ss_pred             H-------HHHHHHHHHHHHhcccHhhhhHHHHHHHHHHhc--cHHHH-HHHHHHHHHHHHHHhhhhcCCce-eccCCcc
Confidence            4       88887776533 22222  33333333334442  11221 12222344888888888777888 4566778


Q ss_pred             eEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHHH
Q 042445          173 MFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAFY  239 (246)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~  239 (246)
                      +.++++++....     +.......+...|+.+.++.     ..+||..+  .+++++++++..+++++
T Consensus       283 N~vf~~l~~~~i-----~~l~~~~~~~~~~~~~~~~~-----~~vRfvts~a~~~edv~~~~~~~~~~~  341 (342)
T COG2008         283 NMVFVRLPESAI-----EALRLAGALFYRGVLIGAHG-----EIVRFVTSWATSEEDVDELVAAIKALL  341 (342)
T ss_pred             cEEEEECChHHH-----HHHHhhchhheeeeeccCCC-----ceEEEEeeccCCHHHHHHHHHHHHHhh
Confidence            888888875321     11111222223333332211     46899877  48999998888887764

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=99.33  E-value=1e-10  Score=101.65  Aligned_cols=200  Identities=14%  Similarity=0.075  Sum_probs=121.6

Q ss_pred             CccC-CChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCC
Q 042445           20 VGSG-FSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNG   98 (246)
Q Consensus        20 tG~~-~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~   98 (246)
                      .|.+ .+++++++|.++|++||+++|.||++.++ ..+... ....++-...   +.+++|.++ .|+.+|.+++++   
T Consensus       259 ~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGf-R~g~~g-a~~~~gv~PD---i~t~gK~lg-gG~Pigav~g~~---  329 (474)
T PLN02482        259 SGFIVPKKEFLEGLREITKENGALLVFDEVMTGF-RIAYGG-AQEYFGITPD---LTTLGKVIG-GGLPVGAYGGRR---  329 (474)
T ss_pred             CCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCe-ecCcch-HhHHhCCCCC---EEEecchhh-CCCceEEEEEcH---
Confidence            3544 45789999999999999999999999877 443322 2222222212   457899975 679999998888   


Q ss_pred             CcchhhHHHHHHHH----hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCC---CCccccCCCC
Q 042445           99 ILQDSGIVDSIKIF----LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIP---CITCPKKPEG  171 (246)
Q Consensus        99 ~~~~~~~~~~l~~~----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~  171 (246)
                           ++++.+...    ...+++.||++..++.+.|+...+   ....+.++++-+.+.+.|+++.   ++......-+
T Consensus       330 -----ei~~~~~~~~~~~~~~T~~gnpl~~aAala~L~~l~~---~~~~~~~~~~g~~l~~~L~~l~~~~g~~~~~~~v~  401 (474)
T PLN02482        330 -----EIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQQ---PGTYEYLDKITKKLIQGILEAGKKAGHEMCGGYIS  401 (474)
T ss_pred             -----HHHHhhccCCCcccccCcchhHHHHHHHHHHHHHHhc---cCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcccc
Confidence                 888877532    223446799999998888874321   2344445555555555554421   2221111223


Q ss_pred             ceEEEEEeccccc---cCC--CC--hHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHHHHH
Q 042445          172 SMFVMVKLNYSLL---EGI--NS--DMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDR  241 (246)
Q Consensus       172 g~~~~~~~~~~~~---~~~--~~--~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~~~  241 (246)
                      |++. +.+.....   ++.  .+  ....+...+.++||.+.|... . .+.  +++..++++++++++++.+++++
T Consensus       402 g~~g-i~f~~~~~~~~~~~~~~d~~~~~~~~~~l~~~Gv~~~~~~~-~-~~~--psl~ht~~dId~~l~al~~~l~~  473 (474)
T PLN02482        402 GMFG-FFFTEGPVYNFADAKKSDTAKFARFHRGMLEEGVYLAPSQF-E-AGF--TSLAHTEEDIDFTIAAAERVLAR  473 (474)
T ss_pred             eEEE-EEEecCCccChhhhccCCHHHHHHHHHHHHHCCeEEeccCC-C-CCc--CCCCCCHHHHHHHHHHHHHHHHh
Confidence            4432 22322110   000  01  123445567789999987432 1 111  55666999999999999999865

>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]

Probab=99.32  E-value=3e-10  Score=92.91  Aligned_cols=193  Identities=17%  Similarity=0.110  Sum_probs=136.0

Q ss_pred             CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCCCcch
Q 042445           23 GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQD  102 (246)
Q Consensus        23 ~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~~  102 (246)
                      .+++..+++..++|+++|.++|.||+.++|...|    .+..++..+-+.-+-|++|.. ..|+.+|.+++++       
T Consensus       229 ~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG----~~wgfe~h~v~PDIvTmAKgi-GnG~Pl~AVvtt~-------  296 (442)
T KOG1404|consen  229 ELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRTG----HMWGFESHGVVPDIVTMAKGI-GNGFPLGAVVTTP-------  296 (442)
T ss_pred             cCCchHHHHHHHHHHHcCCEEEehhhhhcccccc----ccccccccCCCccHHHHHhhc-cCCCcceeeecCH-------
Confidence            4566899999999999999999999999998776    445677777778899999994 6779999999998       


Q ss_pred             hhHHHHHHHHh--hhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc----CCCCccccCCCCceEEE
Q 042445          103 SGIVDSIKIFL--NISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKE----IPCITCPKKPEGSMFVM  176 (246)
Q Consensus       103 ~~~~~~l~~~~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~g~~~~  176 (246)
                       ++.+-+.+..  ..+++.+|++.++..+.|+-..++.+.+..+..   -.++.+.|.+    .|-+..  ...-|+++-
T Consensus       297 -EIa~v~~~~~~~fnTyggnP~a~avg~aVL~Vikee~LqE~aa~v---G~yl~~~l~~l~d~h~iIGd--VRG~GLm~G  370 (442)
T KOG1404|consen  297 -EIADVLNQKSSHFNTYGGNPVACAVGLAVLKVIKEENLQENAAEV---GSYLLEKLAALKDKHPIIGD--VRGRGLMLG  370 (442)
T ss_pred             -HHHHHHHhccccccccCCCchhHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHhhcCCceee--cccceeEEE
Confidence             8888887664  346689999999999999855455554444433   3333444433    332221  123377777


Q ss_pred             EEeccccccCCC---ChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHH
Q 042445          177 VKLNYSLLEGIN---SDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRM  235 (246)
Q Consensus       177 ~~~~~~~~~~~~---~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l  235 (246)
                      +++-....+..+   ..-..+.+-+++.|+.|.-|..+  .+.+|++...  +.++++-+++..
T Consensus       371 vE~V~dk~~~~pp~~~~~~~i~~~cke~Gvlvg~g~i~--G~vfriaPPlciT~edi~f~~~~~  432 (442)
T KOG1404|consen  371 VELVSDKSEPKPPATAEGAVIGEQCKELGVLVGKGGIH--GNVFRIAPPLCITKEDIDFAVEYF  432 (442)
T ss_pred             EEEecccCCCCCcchHHHHHHHHHHHHhCeeeeccccc--ceEEEecCCeeccHHHHHHHHHHH
Confidence            776433211111   12335677788999999666655  4599998764  888887777755

>PRK03080 phosphoserine aminotransferase; Provisional

Probab=99.30  E-value=2.6e-10  Score=96.96  Aligned_cols=206  Identities=15%  Similarity=0.064  Sum_probs=130.2

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccccccccc-CCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIV-PGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-~g~r~G~   90 (246)
                      .+++-.|.||...+   +++|++  +++|+++|+|-+.+.....   . .+..+     -+++.|.-|.+++ +|  +|+
T Consensus       141 ~~~h~~t~tG~~~p---i~~I~~--~~~g~~~vVDa~qs~G~~p---i-dv~~i-----D~~~~s~~K~l~~P~G--~g~  204 (378)
T PRK03080        141 VFTWNGTTTGVRVP---VARWIG--ADREGLTICDATSAAFALP---L-DWSKL-----DVYTFSWQKVLGGEGG--HGM  204 (378)
T ss_pred             EEEecCCccceecc---chhhcc--ccCCCeEEEecccccccCC---C-CHHHC-----cEEEEehhhhCCCCCc--eEE
Confidence            55566689999998   666666  7789999999987754322   1 12222     2788889998765 66  888


Q ss_pred             EEeeCCCCCcchhhHHHHHHHHh----------------------hh-c-CCCCchHHHHHHHHHhhchHH-HHHHHHHH
Q 042445           91 LVTSDPNGILQDSGIVDSIKIFL----------------------NI-S-SDPATFIQGAVPQILEKTEEE-FFSKIIDI  145 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~~----------------------~~-~-~~~~~~~q~~~~~~l~~~~~~-~~~~~~~~  145 (246)
                      ++.++        +.++++....                      .. + ..++.....++.++|+...+. -++...++
T Consensus       205 l~v~~--------~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r  276 (378)
T PRK03080        205 AILSP--------RAVERLESYTPARPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDALIAR  276 (378)
T ss_pred             EEECH--------HHHHhhhcccCCCCCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            88887        6666554210                      00 0 022333333435555532233 36777888


Q ss_pred             HHHHHHHHHHHhhcCCCCcccc-CC--CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee
Q 042445          146 LRETADKCCDRLKEIPCITCPK-KP--EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA  222 (246)
Q Consensus       146 ~~~~~~~l~~~L~~~~~~~~~~-~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~  222 (246)
                      .++..+.+.+.|++++++..+. .+  .++..+.+.++... ++  .+.+....++ ++|+.+..|.+....+.+|+|+.
T Consensus       277 ~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~i~~~~~~~~~-~~--~~~~~~~~l~-~~~i~v~~g~~~~~~~~vRis~~  352 (378)
T PRK03080        277 TAANASVLYDWAEKTPWATPLVADPATRSNTSVTLDFVDAQ-AA--VDAAAVAKLL-RENGAVDIEPYRDAPNGLRIWCG  352 (378)
T ss_pred             HHHHHHHHHHHHHhCCCcccccCCccccCccEEEEEcCCch-HH--HHHHHHHHHH-HcCCeeccccccCCCCcEEEecC
Confidence            8889999999999886655332 12  12233444454300 00  1344555544 56888877654323688999988


Q ss_pred             c--ChHHHHHHHHHHHHHHHHHhhc
Q 042445          223 V--EPSALENGLGRMKAFYDRHAEK  245 (246)
Q Consensus       223 ~--~~~~l~~~~~~l~~~~~~~~~~  245 (246)
                      .  ++++++.+++.|++++++.+..
T Consensus       353 ~~~t~~di~~l~~al~~~~~~~~~~  377 (378)
T PRK03080        353 PTVEPADVEALTPWLDWAFERLKAA  377 (378)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHhhc
Confidence            4  8999999999999998877653

>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

Probab=99.29  E-value=3.1e-10  Score=92.42  Aligned_cols=151  Identities=16%  Similarity=0.138  Sum_probs=100.8

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      |.++++|.++    +.-.-.||.+.+++   +++|.++|+++++++|+|..++.-.+-       ..+ ...--|+++|+
T Consensus       138 ~~~~~aI~~nTkavf~EtigNP~~~v~D---ie~ia~iAh~~gvpliVDNT~atpyl~-------rP~-~hGADIVvHS~  206 (426)
T COG2873         138 ENFEAAIDENTKAVFAETIGNPGLDVLD---IEAIAEIAHRHGVPLIVDNTFATPYLC-------RPI-EHGADIVVHSA  206 (426)
T ss_pred             HHHHHHhCcccceEEEEeccCCCccccC---HHHHHHHHHHcCCcEEEecCCCcceec-------chh-hcCCCEEEEee
Confidence            5677778876    55566699999987   999999999999999999988742211       111 11123899999


Q ss_pred             ccccccCCceEEEEEeeCCCCCc--------------------------chhhHHHHHH--HHhhhcCCCCchHHHHHHH
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGIL--------------------------QDSGIVDSIK--IFLNISSDPATFIQGAVPQ  129 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~--------------------------~~~~~~~~l~--~~~~~~~~~~~~~q~~~~~  129 (246)
                      ||..|+.|--+|-++.... .+.                          .+..++-+.+  ..++.+.+.||+....+..
T Consensus       207 TK~igGhGt~iGG~iVD~G-~FDw~~~~rfP~~~~p~p~YhGl~~~~~~g~~af~~~~r~~~lRDlGa~lsPfnAfl~lq  285 (426)
T COG2873         207 TKYIGGHGTAIGGVIVDGG-KFDWTANGRFPEFTTPDPSYHGLVYTETFGNAAFIIKARVQLLRDLGATLSPFNAFLLLQ  285 (426)
T ss_pred             cccccCCccccceEEEeCC-ccccccCCCCcccCCCCccccceehhhhcccHHHHHHHHHHHHHhcccccCcHHHHHHHh
Confidence            9999999999999887652 110                          0000111111  1233444566666655555


Q ss_pred             HHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445          130 ILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKP  169 (246)
Q Consensus       130 ~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~  169 (246)
                      -++.     +.-+.++..+|...+.+.|+.+|.+.++..|
T Consensus       286 GlET-----L~LRmerH~~NA~~vA~~L~~HpkV~~V~Yp  320 (426)
T COG2873         286 GLET-----LSLRMERHCENALKVAEFLENHPKVAWVNYP  320 (426)
T ss_pred             chhh-----hHHHHHHHHHhHHHHHHHHhcCCCeeeeecC
Confidence            5543     6666677788999999999998877654444

>PRK06434 cystathionine gamma-lyase; Validated

Probab=99.29  E-value=4.5e-10  Score=95.24  Aligned_cols=134  Identities=10%  Similarity=0.084  Sum_probs=90.7

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCC-ceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPG-LRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g-~r~G~   90 (246)
                      +...|+|||+.+.+   +++|.++|++++  +++|.++.... .+.   ++. .+   --+++.|.+|.++++| .-.|.
T Consensus       153 ~~e~~snpt~~v~D---i~~I~~la~~~~--lvVD~t~~s~~-~~~---pl~-~g---aDivv~S~tK~i~G~~d~~gG~  219 (384)
T PRK06434        153 YAESITNPTLKVPD---IKNVSSFCHEND--VIVDATFASPY-NQN---PLD-LG---ADVVIHSATKYISGHSDVVMGV  219 (384)
T ss_pred             EEEcCCCCCceeec---HHHHHHHHHHcC--eEEECCCCCcc-cCC---chh-cC---CCEEEeecccccCCCCCceEEE
Confidence            57789999998754   999999999998  46699975322 111   221 11   2388889999988766 44565


Q ss_pred             EEeeCCCCCcchhhHHHHHHHHh-hhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445           91 LVTSDPNGILQDSGIVDSIKIFL-NISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKP  169 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~  169 (246)
                      +++.++       ++.++++... ..+...+++..+.+.+-|+     .+..+.++.+++...+.+.|+++|.+..+..|
T Consensus       220 vv~~~~-------~~~~~~~~~~~~~G~~~~~~~A~l~~~gL~-----tL~~R~~r~~~~a~~~a~~L~~~p~v~~V~yP  287 (384)
T PRK06434        220 AGTNNK-------SIFNNLVERRKTLGSNPDPIQAYLALRGLK-----TLGLRMEKHNKNGMELARFLRDSKKISNVYYP  287 (384)
T ss_pred             EecCcH-------HHHHHHHHHHHhcCCCCCHHHHHHHHhCCC-----cHHHHHHHHHHHHHHHHHHHHcCCCccEEECC
Confidence            656442       6666666543 3444556665555555554     36777777788999999999998877655555


Q ss_pred             C
Q 042445          170 E  170 (246)
Q Consensus       170 ~  170 (246)
                      .
T Consensus       288 g  288 (384)
T PRK06434        288 D  288 (384)
T ss_pred             C
Confidence            3

>KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.28  E-value=3.8e-11  Score=99.65  Aligned_cols=191  Identities=12%  Similarity=0.062  Sum_probs=128.4

Q ss_pred             hHHHHHHHHHHcCCEEEEccccCCcccCC--CCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCCCcchhhH
Q 042445           28 FVSPIAETAKKLGIMVIANEVYGHLAFGN--TPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQDSGI  105 (246)
Q Consensus        28 ~~~~l~~~~~~~~~~ii~De~y~~~~~~~--~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~  105 (246)
                      .++++++++++|.++++.||+++....+.  .+..-....++.+..|.+++|+|.|+.+|   ||+.+++        ++
T Consensus       294 ~Lp~vvalkkkykayl~lDEAHSiGA~g~tGrgvce~~g~d~~dvDImMGtftKSfga~G---Gyiagsk--------~l  362 (519)
T KOG1357|consen  294 DLPEVVALKKKYKAYLYLDEAHSIGAMGATGRGVCEYFGVDPEDVDIMMGTFTKSFGAAG---GYIAGSK--------EL  362 (519)
T ss_pred             ccHHHHHhhccccEEEEeeccccccccCCCCcceeeccCCCchhheeecceehhhccccc---ceecCcH--------HH
Confidence            68999999999999999999999877643  33333445567777899999999999999   9999999        99


Q ss_pred             HHHHHHHhhh----cCCCCchHHHHHHHHHh---hchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC-ceEEEE
Q 042445          106 VDSIKIFLNI----SSDPATFIQGAVPQILE---KTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG-SMFVMV  177 (246)
Q Consensus       106 ~~~l~~~~~~----~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-g~~~~~  177 (246)
                      ++.++.....    ++..+|+.|.....+.-   +......++..+++.++...++..|+.. |+..+...+. -.-+.+
T Consensus       363 id~lrt~s~~~~yat~~sppvaqq~~ssl~~i~G~dgt~~g~~k~~~l~~ns~yfr~~l~~~-gfivyG~~dSpVvplll  441 (519)
T KOG1357|consen  363 IDYLRTPSPSALYATSLSPPVAQQILTSVKHIMGEDGTNRGRQKIERLAENSRYFRWELQKM-GFIVYGNNDSPVVPLLL  441 (519)
T ss_pred             HhhhccCCCceeecccCChHHHHHHHHHHHhhcCCCcccHHHHHHHHHHhhhHHHHHhhhcC-cEEEecCCCCCcceeee
Confidence            9998876331    21334444444333222   1123667777888899999999999886 5543322222 222222


Q ss_pred             EeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC---CCeEEEEeec--ChHHHHHHHHHHHHH
Q 042445          178 KLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFAV--EPSALENGLGRMKAF  238 (246)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~iRls~~~--~~~~l~~~~~~l~~~  238 (246)
                      -.+..       -..+-. .+.+++|.++-..+...   ...+|++.+.  +.|+++.+++.+.+.
T Consensus       442 ~~~~k-------~~~f~r-~~l~~nigvVvvgfPatpl~e~r~R~c~Sa~ht~e~ld~~l~~i~~~  499 (519)
T KOG1357|consen  442 YGPAK-------IVAFSR-EMLERNIGVVVVGFPATPLLESRARFCLSASHTKEDLDRALEVIDRV  499 (519)
T ss_pred             cCccc-------ccHHHH-HHHhcCceEEEEeCCCchHHHhHHHhhhcccccHHHHHHHHHHHhhh
Confidence            12221       334433 45566666665444332   6888999885  788888888877665

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase

Probab=99.25  E-value=4.8e-10  Score=96.22  Aligned_cols=219  Identities=14%  Similarity=0.094  Sum_probs=131.2

Q ss_pred             hhhhhhhcc---c----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEE
Q 042445            2 ELINQDITR---E----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTL   74 (246)
Q Consensus         2 e~~~~~~~~---~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~   74 (246)
                      +.+++.|++   +    +.++|+  ||.....+++++|.++|++||+++|+|++|+.....-.... -.......-.+++
T Consensus       192 e~Le~aIt~~~~kai~~Vv~Tp~--t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~~~~~~~-~~g~~~Grad~vv  268 (444)
T TIGR03531       192 EDIERAIEEIGPDNILCVLSTTS--CFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSNKYMELI-NKAIKVGRVDAVV  268 (444)
T ss_pred             HHHHHHHHhccCCCEEEEEEcCC--cCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcChhhhhhh-hccccccCCCeEE
Confidence            456666663   2    555552  66666778999999999999999999999995331100000 0111110113567


Q ss_pred             cccccccccCCceEEEEE-eeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 042445           75 GSISKRGIVPGLRLGWLV-TSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKC  153 (246)
Q Consensus        75 ~s~sK~~~~~g~r~G~i~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l  153 (246)
                      .|++|.+.+||.  |+++ +.++       ++++.+..... ....+...|.+...++.. ..+.+++..+...++++.+
T Consensus       269 ~s~hK~l~~pg~--Gg~I~~~d~-------el~~~i~~~y~-g~~~~s~~~~~~~~ll~~-G~~g~~~li~~~~~~a~~l  337 (444)
T TIGR03531       269 SSTDKNFMVPVG--GAIIYSFDE-------NFIQEISKSYP-GRASASPSLDVLITLLSL-GSKGYLELLKERKEMYKYL  337 (444)
T ss_pred             EeCccCCCCCCC--EEEEEECCH-------HHHHHHHHhcc-CCCCChHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHH
Confidence            799999988876  6665 5343       77777765432 223455677777777764 3567777888888899988


Q ss_pred             HHHhhcCC---CCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeE----EecCC-------CcCC------
Q 042445          154 CDRLKEIP---CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVI----VLPGI-------TVGL------  213 (246)
Q Consensus       154 ~~~L~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~----v~pg~-------~f~~------  213 (246)
                      .+.|+++.   |-.....|.-...+-+.+...  .  ..+...+-..|-.++|.    |.||.       .|..      
T Consensus       338 ~~~L~~l~~~~~~~~~~~~~n~is~~~~~~~~--~--~~~~~~~g~~l~~~~v~g~r~v~~~~~~~~~~~~~~~~~~~~~  413 (444)
T TIGR03531       338 KELLQKLAERHGERLLDTPENPISSAMTLSTL--K--GKDPTMLGSMLYSRRVTGPRVVTNGDSKTVGGCEFKGYGSHTS  413 (444)
T ss_pred             HHHHHHHHHhhCcEeecCCCCceeEEEecccc--c--ccCHHHHHHHHHhCCCCCceeecCCCceEECCEEeeccccccc
Confidence            88887632   333223334344444444321  1  12344445556566552    34554       2211      


Q ss_pred             ---CCeEEEE--eecChHHHHHHHHHHHHH
Q 042445          214 ---KDWLRIT--FAVEPSALENGLGRMKAF  238 (246)
Q Consensus       214 ---~~~iRls--~~~~~~~l~~~~~~l~~~  238 (246)
                         ..++-++  ++.+.++++..+++|.++
T Consensus       414 ~~~~~y~~~~~~~g~~~~~~~~~~~~l~~~  443 (444)
T TIGR03531       414 NYPCPYITAAAAIGMTKEDVDTFVSRLEKS  443 (444)
T ss_pred             CCCchhHHHHHHhCCcHHHHHHHHHHHhhc
Confidence               1255444  335888999999998875

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=99.25  E-value=1.3e-09  Score=92.92  Aligned_cols=198  Identities=16%  Similarity=0.175  Sum_probs=115.7

Q ss_pred             CcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcc-cCCCCCccccccCCcccEEEEcccc--cccccCCceEEEEE
Q 042445           16 QVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLA-FGNTPFVSMGVFGSIVPLLTLGSIS--KRGIVPGLRLGWLV   92 (246)
Q Consensus        16 p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~-~~~~~~~~~~~~~~~~~~i~~~s~s--K~~~~~g~r~G~i~   92 (246)
                      ++||+|...+   +++|.++|+++|+++|+|++++.+. +.+....+. .++    -+.+.|++  |.++++  ..|+++
T Consensus       127 ~~~~~G~~~~---~~~i~~l~~~~~~~lI~D~a~a~g~~~~~~~~g~~-~~~----d~~~~S~~~~K~~~~~--~GG~v~  196 (380)
T TIGR03588       127 PVDFAGKSVD---MQAIAALAKKHGLKIIEDASHALGAEYGGKPVGNC-RYA----DATVFSFHPVKIITTA--EGGAVT  196 (380)
T ss_pred             EeCCCCccCC---HHHHHHHHHHcCCEEEEECCCcccCccCCEeCCCc-ccc----ceEEEecCCCCccccc--CceEEE
Confidence            4578997755   8899999999999999999998653 443222110 011    25566654  887543  357788


Q ss_pred             eeCCCCCcchhhHHHHHHHHhhhcC--------------------------CCCchHHHHHHHHHhhchHHHHHHHHHHH
Q 042445           93 TSDPNGILQDSGIVDSIKIFLNISS--------------------------DPATFIQGAVPQILEKTEEEFFSKIIDIL  146 (246)
Q Consensus        93 ~~~~~~~~~~~~~~~~l~~~~~~~~--------------------------~~~~~~q~~~~~~l~~~~~~~~~~~~~~~  146 (246)
                      +.++       ++.++++.....+.                          .++.+..+....     .-..+++..+.-
T Consensus       197 ~~~~-------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~n~~m~~l~aa~g~~-----qL~~l~~~~~~r  264 (380)
T TIGR03588       197 TNDE-------ELAERMRLLRSHGITKDPLLFEKQDEGPWYYEQQELGFNYRMTDIQAALGLS-----QLKKLDRFVAKR  264 (380)
T ss_pred             ECCH-------HHHHHHHHHHHCCCCCCcccccccccCcceeeeeccccccCccHHHHHHHHH-----HHHHHHHHHHHH
Confidence            7763       67776665422110                          111111111111     122356666666


Q ss_pred             HHHHHHHHHHhhcCCCCccccCCCC---c-eEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCc-----------
Q 042445          147 RETADKCCDRLKEIPCITCPKKPEG---S-MFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITV-----------  211 (246)
Q Consensus       147 ~~~~~~l~~~L~~~~~~~~~~~~~~---g-~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f-----------  211 (246)
                      +++.+.+.+.|..++++..+..+.+   . +...+.++...  +.  +.+.+.+.|.++||.+......           
T Consensus       265 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~--~r~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~  340 (380)
T TIGR03588       265 REIAARYDRLLKDLPYFTPLTIPLGSKSAWHLYPILLDQEF--GC--TRKEVFEALRAAGIGVQVHYIPVHLQPYYRQGF  340 (380)
T ss_pred             HHHHHHHHHHhcCCCCccCCCCCCCCEeEEEEEEEEECCcC--CC--CHHHHHHHHHHCCCCcccCCcccccChhhhccC
Confidence            7788888888888876653322221   2 22233343210  11  4555666788999988743311           


Q ss_pred             C---C-------CCeEEEEeec--ChHHHHHHHHHHHHHH
Q 042445          212 G---L-------KDWLRITFAV--EPSALENGLGRMKAFY  239 (246)
Q Consensus       212 ~---~-------~~~iRls~~~--~~~~l~~~~~~l~~~~  239 (246)
                      .   .       .+.+++.+..  ++++++..++.|++++
T Consensus       341 ~~~~~p~a~~~~~~~l~lP~~~~l~~~dv~~i~~~l~~~~  380 (380)
T TIGR03588       341 GDGDLPSAENFYLAEISLPLHPALTLEQQQRVVETLRKVL  380 (380)
T ss_pred             CcCCCcHHHHHHhceEEcCCCCCCCHHHHHHHHHHHHHhC
Confidence            0   0       2667777663  8888999888888763

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>TIGR01366 serC_3 phosphoserine aminotransferase, putative

Probab=99.25  E-value=7.9e-10  Score=93.41  Aligned_cols=200  Identities=12%  Similarity=0.051  Sum_probs=125.1

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      .+++-.|.||+..+.+++      ++++|+++++|-+.+.....    ..+..+     -+++.|.-|.++++|- ++.+
T Consensus       133 ~~~h~et~tG~~~pi~~I------~~~~g~~~iVDavqs~g~~~----idv~~~-----D~~~~s~~K~lg~~~G-l~~~  196 (361)
T TIGR01366       133 AWAHNETSTGVAVPVRRP------EGSDDALVVIDATSGAGGLP----VDIAET-----DVYYFAPQKNFASDGG-LWLA  196 (361)
T ss_pred             EEcccCCccceecccccc------cccCCCeEEEEcCccccCCC----CCHHHC-----CEEEEEchhhcCCCCc-eEEE
Confidence            566667999999995543      47899999999987753311    122211     2678889999998853 5555


Q ss_pred             EeeCCCCCcchhhHHHHHHHH----------hh-----------h-cCCCCchHHHHHHHHHhhchHH-HHHHHHHHHHH
Q 042445           92 VTSDPNGILQDSGIVDSIKIF----------LN-----------I-SSDPATFIQGAVPQILEKTEEE-FFSKIIDILRE  148 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~----------~~-----------~-~~~~~~~~q~~~~~~l~~~~~~-~~~~~~~~~~~  148 (246)
                      +.++        ++++++...          .+           . .+.++....+++.++++.-.+. -++...++.++
T Consensus       197 ~~s~--------~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~  268 (361)
T TIGR01366       197 IMSP--------AALERIEAIAASGRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTAD  268 (361)
T ss_pred             EECH--------HHHhhhhcccCCCCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            6666        555554311          00           0 1122333333555555532222 26667788889


Q ss_pred             HHHHHHHHhhcCCCCccccCCC---CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--
Q 042445          149 TADKCCDRLKEIPCITCPKKPE---GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--  223 (246)
Q Consensus       149 ~~~~l~~~L~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--  223 (246)
                      ..+.+.+.|++.+++..+....   ......+.++..    .  +.+.+...|.++||.+.++...-..+.+|+|+..  
T Consensus       269 l~~~l~~~l~~~~~~~~~~~~~~~~s~~v~~v~~~~g----~--~~~~v~~~L~~~gI~i~~~~~~l~~~~vRis~~~~~  342 (361)
T TIGR01366       269 SSSRLYSWAQERPYATPFVTDPGKRSQVVGTIDFVDD----I--DAATVAKILRANGIVDTEPYRKLGRNQLRVAMFPAI  342 (361)
T ss_pred             HHHHHHHHHHhCCCcccCCCChhhcccceEEEECCCc----c--CHHHHHHHHHHCCCeeccCccccCCCcEEEEcCCCC
Confidence            9999999999886554332211   112223344322    1  4444555667889999876422226789999984  


Q ss_pred             ChHHHHHHHHHHHHHHHH
Q 042445          224 EPSALENGLGRMKAFYDR  241 (246)
Q Consensus       224 ~~~~l~~~~~~l~~~~~~  241 (246)
                      +.++++++++.|++.+++
T Consensus       343 t~~di~~l~~al~~~~~~  360 (361)
T TIGR01366       343 DPDDVEALTECVDWVVER  360 (361)
T ss_pred             CHHHHHHHHHHHHHHHhh
Confidence            899999999999988765

This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=99.20  E-value=7.5e-09  Score=86.52  Aligned_cols=222  Identities=18%  Similarity=0.189  Sum_probs=144.9

Q ss_pred             hhhhhhhccc----cccCCc--CCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEc
Q 042445            2 ELINQDITRE----FSDFQV--FHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLG   75 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~--NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~   75 (246)
                      |.+++.+.+.    .+...|  .+||+.-+   +++|.++|++||+++|+|-+=+   +++.++    .++.+.--+.+.
T Consensus       120 ~~v~~~L~~~~~~~~V~~vH~ETSTGvlnp---l~~I~~~~k~~g~l~iVDaVsS---~Gg~~~----~vd~wgiDv~it  189 (383)
T COG0075         120 EEVEEALDKDPDIKAVAVVHNETSTGVLNP---LKEIAKAAKEHGALLIVDAVSS---LGGEPL----KVDEWGIDVAIT  189 (383)
T ss_pred             HHHHHHHhcCCCccEEEEEeccCcccccCc---HHHHHHHHHHcCCEEEEEeccc---CCCccc----chhhcCccEEEe
Confidence            4455555532    233333  48888765   9999999999999999998644   233222    223333448888


Q ss_pred             cccccccc-CCceEEEEEeeCC----------CCCcchhhHHHHHHHHh---hhcCCCCchHHHHHHHHHhhchHHHHHH
Q 042445           76 SISKRGIV-PGLRLGWLVTSDP----------NGILQDSGIVDSIKIFL---NISSDPATFIQGAVPQILEKTEEEFFSK  141 (246)
Q Consensus        76 s~sK~~~~-~g~r~G~i~~~~~----------~~~~~~~~~~~~l~~~~---~~~~~~~~~~q~~~~~~l~~~~~~~~~~  141 (246)
                      +.-|++++ ||  +|++..++.          ..++.  ++.+..+...   .+-++++....+++..+|+...++-++.
T Consensus       190 gSQK~l~~PPG--la~v~~S~~a~e~~~~~~~~~~yl--DL~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i~~EGle~  265 (383)
T COG0075         190 GSQKALGAPPG--LAFVAVSERALEAIEERKHPSFYL--DLKKWLKYMEKKGSTPYTPPVNLIYALREALDLILEEGLEA  265 (383)
T ss_pred             cCchhccCCCc--cceeEECHHHHHHHhcCCCCceee--cHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHH
Confidence            88999886 67  677776651          00111  2222222221   1222556666677778888655677999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCccccCCC-Cc-eEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEE
Q 042445          142 IIDILRETADKCCDRLKEIPCITCPKKPE-GS-MFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRI  219 (246)
Q Consensus       142 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~g-~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRl  219 (246)
                      +.++++++.+.+++.++++ |+..+..++ .. ....+.++.+    + ++.+....+++++|+.+.+|...-....+||
T Consensus       266 r~~RH~~~~~a~r~~~~al-Gl~~~~~~~~~s~tvta~~~P~g----~-~~~~~~~~~~~~~g~~i~gg~~~l~gkifRI  339 (383)
T COG0075         266 RIARHRRLAEALRAGLEAL-GLELFADPERRSPTVTAIKVPEG----V-DDKKVRRALLKEYGVEIAGGQGPLKGKIFRI  339 (383)
T ss_pred             HHHHHHHHHHHHHHHHHHc-CCccccCcccCCCceEEEECCCC----C-CcHHHHHHHHHhCCEEecccccccCccEEEE
Confidence            9999999999999999998 666544221 12 2222334432    2 3444445788888999988776555789999


Q ss_pred             Eee-c-ChHHHHHHHHHHHHHHHHHh
Q 042445          220 TFA-V-EPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       220 s~~-~-~~~~l~~~~~~l~~~~~~~~  243 (246)
                      +-. . ..+++..++..|+.++.++.
T Consensus       340 GhMG~~~~~dv~~~l~ale~~L~~~g  365 (383)
T COG0075         340 GHMGNVRPEDVLAALAALEAALRELG  365 (383)
T ss_pred             ecCccCCHHHHHHHHHHHHHHHHHcC
Confidence            855 3 88899999999999988753

>TIGR01364 serC_1 phosphoserine aminotransferase

Probab=99.19  E-value=1.7e-09  Score=90.89  Aligned_cols=195  Identities=15%  Similarity=0.090  Sum_probs=130.7

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      .+++-.|.||+..+        ++++.+++++++|-+.+....    ...+..   .+  +++.|.-|.||.||  +|++
T Consensus       135 ~~th~ETstGv~~~--------~l~~~~~~l~iVDavss~g~~----~id~~~---~d--~~~~ssqK~lgP~G--lg~l  195 (349)
T TIGR01364       135 HYCANETIHGVEFR--------ELPDVKNAPLVADMSSNILSR----PIDVSK---FG--LIYAGAQKNIGPAG--LTVV  195 (349)
T ss_pred             EEcCCCCcccEecc--------eecccCCCeEEEEccccccCc----cCCHHH---cc--EEEEecccccCCCc--eEEE
Confidence            44555579999765        556678999999998774331    112222   23  88888999998887  8888


Q ss_pred             EeeCCCCCcchhhHHHHHHH----------Hh--h-hcCCCCchHHHHHHHHHhhchHH-HHHHHHHHHHHHHHHHHHHh
Q 042445           92 VTSDPNGILQDSGIVDSIKI----------FL--N-ISSDPATFIQGAVPQILEKTEEE-FFSKIIDILRETADKCCDRL  157 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~----------~~--~-~~~~~~~~~q~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L  157 (246)
                      +.++        ++++++..          ..  . ..++++....+++.++|+.-.+. -++.+.++.++..+.+.+.|
T Consensus       196 ~~s~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l  267 (349)
T TIGR01364       196 IVRK--------DLLGRASRITPSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTI  267 (349)
T ss_pred             EECH--------HHHhhcccCCCCcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence            8887        66654421          11  1 12256677777777777754444 48999999999999999999


Q ss_pred             hcCCCCcccc-CC--CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHH
Q 042445          158 KEIPCITCPK-KP--EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGL  232 (246)
Q Consensus       158 ~~~~~~~~~~-~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~  232 (246)
                      ++++|+.... .|  ..+..+.+.++...      ........+.++|+++.+|..  ..+.+|+|+..  +.++++.++
T Consensus       268 ~~~~gl~~~~~~~~~rs~~v~sf~~~~~~------~~~~~~~~~~~~Gi~~~~~~~--~~g~vRvS~~~~nt~edid~l~  339 (349)
T TIGR01364       268 DNSNGFYRNPVDPRNRSRMNVVFTLGNEE------LEKRFLKEAEERGLVSLKGHR--SVGGMRASIYNAMPLEGVQALV  339 (349)
T ss_pred             HhCCCeeccCCCHHHcCCeEEEEecCChh------HhHHHHHHHHHCCCcccCCcc--ccCeeEEECcCCCCHHHHHHHH
Confidence            9997764321 12  12233444444221      113344567789997777765  24789999885  799999999


Q ss_pred             HHHHHHHHH
Q 042445          233 GRMKAFYDR  241 (246)
Q Consensus       233 ~~l~~~~~~  241 (246)
                      +.|+++.++
T Consensus       340 ~al~~~~~~  348 (349)
T TIGR01364       340 DFMKEFQKK  348 (349)
T ss_pred             HHHHHHHHh
Confidence            999987765

This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).

>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional

Probab=99.17  E-value=1.9e-09  Score=91.04  Aligned_cols=196  Identities=16%  Similarity=0.092  Sum_probs=131.0

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      .+++-.|.||+..+  ++++|      +|+++|+|-+.+....    ...+..+   +  +++.|.-|.||.+|  +|++
T Consensus       146 ~~th~eTstGv~~~--~i~~i------~g~l~vVDavss~g~~----~idv~~~---d--~~~~ssqK~lgP~G--lg~l  206 (360)
T PRK05355        146 HYTSNETIDGTEFH--ELPDT------GDVPLVADMSSDILSR----PIDVSKF---G--LIYAGAQKNIGPAG--LTIV  206 (360)
T ss_pred             EEccCCCcceEecC--ccccc------CCCcEEEEcCccccCc----cCCHHHc---c--EEEEeccccccCCc--eEEE
Confidence            44555589999874  24444      8999999998775331    1122222   2  88888899998777  7888


Q ss_pred             EeeCCCCCcchhhHHHHHHH-----------Hh--hhcCCCCchHHHHHHHHHhhchHH-HHHHHHHHHHHHHHHHHHHh
Q 042445           92 VTSDPNGILQDSGIVDSIKI-----------FL--NISSDPATFIQGAVPQILEKTEEE-FFSKIIDILRETADKCCDRL  157 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~-----------~~--~~~~~~~~~~q~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L  157 (246)
                      +.++        ++++++..           ..  ...+++|....+++.++|+...+. -++.+.++.++..+.+++.|
T Consensus       207 ~~s~--------~~l~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l  278 (360)
T PRK05355        207 IVRE--------DLLGRALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAI  278 (360)
T ss_pred             EECH--------HHHhhcccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHH
Confidence            8887        55554432           11  112366777777888888754445 58899999999999999999


Q ss_pred             hcCCCCccccCC--CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHH
Q 042445          158 KEIPCITCPKKP--EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLG  233 (246)
Q Consensus       158 ~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~  233 (246)
                      ++++.+..+..+  ..+..+.+.++...      ..+.....+.++|+.+.+|..  ..+.+|+|+..  +.++++.+++
T Consensus       279 ~~~~~~~~~~~~~~rs~~v~sf~~~~~~------~~~~~~~~~~~~Gi~~~~~~~--~~g~vRiS~~~~nt~eei~~l~~  350 (360)
T PRK05355        279 DSSDFYRNPVAPEDRSRMNVPFTLADEE------LDKKFLAEAKAAGLVGLKGHR--SVGGMRASIYNAMPLEGVQALVD  350 (360)
T ss_pred             HhCCCcccCCChhhcCCcEEEEEcCChH------HHHHHHHHHHHCCCcccCCCC--ccCcEEEECCCCCCHHHHHHHHH
Confidence            998633222221  22233444454321      223344466789999866653  35889999985  7999999999


Q ss_pred             HHHHHHHHH
Q 042445          234 RMKAFYDRH  242 (246)
Q Consensus       234 ~l~~~~~~~  242 (246)
                      .|+++++++
T Consensus       351 ~l~~~~~~~  359 (360)
T PRK05355        351 FMKEFERRH  359 (360)
T ss_pred             HHHHHHHhc
Confidence            999987654

>PRK13237 tyrosine phenol-lyase; Provisional

Probab=99.17  E-value=6.8e-09  Score=88.66  Aligned_cols=223  Identities=17%  Similarity=0.161  Sum_probs=141.6

Q ss_pred             hhhhhhhccc--------cccCCcCCC-ccCCChhhHHHHHHHHHHcCCEEEEccccCCcc----------cCCCCCc-c
Q 042445            2 ELINQDITRE--------FSDFQVFHV-GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLA----------FGNTPFV-S   61 (246)
Q Consensus         2 e~~~~~~~~~--------~~~~p~NPt-G~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~----------~~~~~~~-~   61 (246)
                      +.+++.|+++        ...+++|.. |+..|.++++++.++|++||+.+|.|-+.....          +.+.... .
T Consensus       164 d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAra~gna~fI~~re~~y~~~~i~ei  243 (460)
T PRK13237        164 DKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATRCVENAYFIKEREEGYQDKSIKEI  243 (460)
T ss_pred             HHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcchhcChhhhcccccccCCCcHhHH
Confidence            4556666543        356777887 799999999999999999999999999877331          2221110 0


Q ss_pred             ccccCCcccEEEEcccccccccC-CceEEEEEeeCCCCCcchhhHHHHHHHHh----hh-cC-CCCchHHHHHHHHHhhc
Q 042445           62 MGVFGSIVPLLTLGSISKRGIVP-GLRLGWLVTSDPNGILQDSGIVDSIKIFL----NI-SS-DPATFIQGAVPQILEKT  134 (246)
Q Consensus        62 ~~~~~~~~~~i~~~s~sK~~~~~-g~r~G~i~~~~~~~~~~~~~~~~~l~~~~----~~-~~-~~~~~~q~~~~~~l~~~  134 (246)
                      +........ ....|++|.++.+ |   |++++.++       ++.++++...    .+ ++ +.+.=...+++..|.+.
T Consensus       244 ~~e~~s~aD-~~t~S~~K~~~~~~G---G~i~t~D~-------eL~~~~r~~~~~~eG~~tygg~~grd~~alAvgl~E~  312 (460)
T PRK13237        244 VHEMFSYAD-GCTMSGKKDCLVNIG---GFLAMNDE-------ELFDEAKELVVVYEGMPSYGGMAGRDMEAMAIGIEES  312 (460)
T ss_pred             hhhccCcCc-EEEEeCCCCCCCCCc---eEEEECCH-------HHHHHHHHhccccCCCcCCCChhhhHHHHHHhHHHhh
Confidence            111122222 4555689997765 4   88888775       8888887662    11 11 22333445555555543


Q ss_pred             h-HHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEeccccccCCC----ChHHHHHHHHHhcCeEEec-C
Q 042445          135 E-EEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGIN----SDMEFALKLAKEESVIVLP-G  208 (246)
Q Consensus       135 ~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----~~~~~~~~ll~~~gi~v~p-g  208 (246)
                      . ..|+..+.+    ..+.|.+.|++. |+. +..|.||.-++++...- ++.++    ....++..+-.+.||-..- |
T Consensus       313 ~~~~y~~~ri~----~~~~l~~~L~~~-Gvp-v~~p~ggH~v~vda~~~-lph~~~~~~p~~al~~~ly~~~GiR~~e~g  385 (460)
T PRK13237        313 VQYEYIEHRVG----QVRYLGEKLLAA-GVP-IVEPVGGHAVFLDARRF-LPHLPQDQFPAQALAAELYIESGVRSMERG  385 (460)
T ss_pred             chHHHHHHHHH----HHHHHHHHHHHC-CCc-eecCCCceEEEEEhHHh-CCCCCcccChHHHHHHHHHHHhCcCeEeec
Confidence            3 344444433    557777788775 666 56789999988764320 11111    2566788888899986653 3


Q ss_pred             CCc-CC---------C--CeEEEEeec---ChHHHHHHHHHHHHHHHHH
Q 042445          209 ITV-GL---------K--DWLRITFAV---EPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       209 ~~f-~~---------~--~~iRls~~~---~~~~l~~~~~~l~~~~~~~  242 (246)
                      +.. +.         +  ..+|+++..   +.+.++...+.+....++-
T Consensus       386 ~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~~  434 (460)
T PRK13237        386 IVSAGRDPKTGENHYPKLELVRLTIPRRVYTYAHMDVVADSVIKLYKHR  434 (460)
T ss_pred             ceecccCCCCCccCCCccceeeeccccccccHHHHHHHHHHHHHHHHhH
Confidence            221 11         1  679999983   8999999999998887653

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=99.14  E-value=1.9e-10  Score=94.64  Aligned_cols=132  Identities=18%  Similarity=0.143  Sum_probs=77.5

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCc-ccCCCCCccccccCCcccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHL-AFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~-~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      ++++| ||+|.+++   +++|.++|+++|+++|+||+|..+ .+.+......   ...+..+++.|++|.+  +|++.|+
T Consensus       159 ~l~~p-~~~G~~~d---l~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~---~~~~~div~~S~hK~l--~g~~~~~  229 (294)
T cd00615         159 VITNP-TYYGICYN---LRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSA---AMAGADIVVQSTHKTL--PALTQGS  229 (294)
T ss_pred             EEECC-CCCCEecC---HHHHHHHHHhcCCeEEEECcchhhhccCcccCcch---hhcCCcEEEEchhccc--chHhHHH
Confidence            88889 89999987   889999999999999999999853 3333211111   1224569999999984  6777766


Q ss_pred             EEeeCCCCCcchhhHHHHHHHHhh--hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhh
Q 042445           91 LVTSDPNGILQDSGIVDSIKIFLN--ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLK  158 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~  158 (246)
                      ++..+.. .    ....++.....  .+++++.....++..++... ..+-.+..+...++.+.+++.|.
T Consensus       230 ~l~~~~~-~----~~~~~~~~~~~~~~ttsps~~~~asl~~a~~~~-~~~g~~~~~~~~~~~~~~r~~l~  293 (294)
T cd00615         230 MIHVKGD-L----VNPDRVNEALNLHQSTSPSYLILASLDVARAMM-ALEGKELVEELIELALYARQEIN  293 (294)
T ss_pred             HHHhCCC-c----CCHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHh
Confidence            5544321 1    11233433322  12244444444444444421 12233344445555555555543

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase

Probab=99.13  E-value=9.6e-09  Score=87.52  Aligned_cols=223  Identities=17%  Similarity=0.134  Sum_probs=139.0

Q ss_pred             hhhhhhhccc--------cccCCcC-CCccCCChhhHHHHHHHHHHcCCEEEEccccCCcc--c-----CCCCCccc---
Q 042445            2 ELINQDITRE--------FSDFQVF-HVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLA--F-----GNTPFVSM---   62 (246)
Q Consensus         2 e~~~~~~~~~--------~~~~p~N-PtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~--~-----~~~~~~~~---   62 (246)
                      +.+++.|++.        .+.+++| +.|.++|.++++++.++|++||+.++.|-+.....  +     .+..-.++   
T Consensus       157 ~~Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~~gNA~~I~~re~g~~~~~i~ei  236 (450)
T TIGR02618       157 KKLQKLIDEVGADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDATRCVENAYFIKEREQGYEDKSIAEI  236 (450)
T ss_pred             HHHHHHhccccCcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccchhhChhhhhcccccccCCCHHHH
Confidence            4556666642        4567777 55899999999999999999999999999876421  1     11111122   


Q ss_pred             -cccCCcccEEEEcccccccccC-CceEEEEEeeCCCCCcchhhHHHHHHHHhhhc-----C-CCCchHHHHHHHHHhhc
Q 042445           63 -GVFGSIVPLLTLGSISKRGIVP-GLRLGWLVTSDPNGILQDSGIVDSIKIFLNIS-----S-DPATFIQGAVPQILEKT  134 (246)
Q Consensus        63 -~~~~~~~~~i~~~s~sK~~~~~-g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~-----~-~~~~~~q~~~~~~l~~~  134 (246)
                       ..+-.... .+..|..|.++++ |   |+++..++       ++.++++...-..     + +.+.-...+++..|.+.
T Consensus       237 ~~e~~~~aD-~~~~S~~Kd~~~~~G---G~l~~~d~-------~l~~k~r~~~~~~eG~~tyGgla~r~~~ala~gL~e~  305 (450)
T TIGR02618       237 LKEMMSYAD-GCTMSGKKDCLVNIG---GFLCMNDD-------EMFQSAKELVVVFEGMPSYGGLAGRDMEAMAIGIREA  305 (450)
T ss_pred             HHHHhccCc-EEEEeeccCCCCCCc---eEEEeCCH-------HHHHHHHHHhhhcCCccccCchhhhhHHHHHHHHHHh
Confidence             11111112 3677788887666 5   66665554       8888887662211     1 22333444444445432


Q ss_pred             hH-HHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEeccccccCCC----ChHHHHHHHHHhcCeEEec-C
Q 042445          135 EE-EFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGIN----SDMEFALKLAKEESVIVLP-G  208 (246)
Q Consensus       135 ~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----~~~~~~~~ll~~~gi~v~p-g  208 (246)
                      .+ .+++..    ....+.|.+.|.+. |+. ++.|.+|+-++++...- ++.++    ....++..+-.+.||-..- |
T Consensus       306 ~~~~y~~~r----~~~a~~La~~L~~~-Gvp-v~~p~ggh~V~vda~~~-lph~~~~~~p~~al~~~ly~~~gir~~e~g  378 (450)
T TIGR02618       306 VDYEYIEHR----VKQVRYLGDKLKAA-GVP-IVEPVGGHAVFLDARRF-LPHIPQDQFPAQSLAASIYVETGVRSMERG  378 (450)
T ss_pred             hhHHHHHHH----HHHHHHHHHHHHHC-CCc-ccCCCCcceEEEEhHHh-CCCCChhhChHHHHHHHHHHHhCccEEeec
Confidence            21 222222    23477888888887 777 46788999999865421 11111    2566778888899987654 3


Q ss_pred             CCcC-C---------C--CeEEEEeec---ChHHHHHHHHHHHHHHHHH
Q 042445          209 ITVG-L---------K--DWLRITFAV---EPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       209 ~~f~-~---------~--~~iRls~~~---~~~~l~~~~~~l~~~~~~~  242 (246)
                      +... .         +  ..+|+++..   +.+.++...+.+....++.
T Consensus       379 ~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~~  427 (450)
T TIGR02618       379 IVSAGRNNVTGEHHRPKLELVRLTIPRRVYTYAHMDVVADGIIKLYKHR  427 (450)
T ss_pred             ceecccCCCCCcccCCccceeeeccccccccHhHHHHHHHHHHHHHhhH
Confidence            3321 1         1  689999983   8999999999998887653

This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)

>PLN02724 Molybdenum cofactor sulfurase

Probab=99.10  E-value=8e-09  Score=95.73  Aligned_cols=210  Identities=13%  Similarity=0.037  Sum_probs=129.4

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHc-----CCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccC-C
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKL-----GIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVP-G   85 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~-----~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~-g   85 (246)
                      .++..+|-||..+|.+.+..+.+.+..+     ++++++|-+++....    ...+..++   .-++..|+-|.||.| |
T Consensus       197 a~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~~g~~----piDv~~~~---~Dfl~~S~HK~~GgP~G  269 (805)
T PLN02724        197 AFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGCGTS----PPDLSRYP---ADFVVVSFYKIFGYPTG  269 (805)
T ss_pred             EEEccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeehhhhcCCC----CCChhhcC---CCEEEEecceeccCCCC
Confidence            6667789999999966444333332222     367999998774331    11223332   237888999998744 5


Q ss_pred             ceEEEEEeeCCCCCcchhhHHHHHHHHh------------------------hh-cCCCCchHHHHHHHHHhhchHHHHH
Q 042445           86 LRLGWLVTSDPNGILQDSGIVDSIKIFL------------------------NI-SSDPATFIQGAVPQILEKTEEEFFS  140 (246)
Q Consensus        86 ~r~G~i~~~~~~~~~~~~~~~~~l~~~~------------------------~~-~~~~~~~~q~~~~~~l~~~~~~~~~  140 (246)
                        +|++++.+        ++.+.+....                        .+ ..++|..+..++.++++......++
T Consensus       270 --~G~L~vr~--------~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~l~~ig~~  339 (805)
T PLN02724        270 --LGALLVRR--------DAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKLLNRLTIS  339 (805)
T ss_pred             --ceEEEEeh--------hhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHHHHHHhChH
Confidence              78888877        5544443210                        01 1134555555666666532233467


Q ss_pred             HHHHHHHHHHHHHHHHhhcCC------CCccccCC-------CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEec
Q 042445          141 KIIDILRETADKCCDRLKEIP------CITCPKKP-------EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLP  207 (246)
Q Consensus       141 ~~~~~~~~~~~~l~~~L~~~~------~~~~~~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p  207 (246)
                      +..++.++..+.+.+.|++++      ++..+...       .-+..+.+.+....-..+  ....+..++.++||.++.
T Consensus       340 ~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~~~v--~~~~v~~l~~~~gI~vR~  417 (805)
T PLN02724        340 AIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADGSWV--GHREVEKLASLSGIQLRT  417 (805)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcCCCCEe--CHHHHHHHHHhcCcEEee
Confidence            777888888888898888765      35433221       112233333432110001  234466778889999999


Q ss_pred             CCCcCC-----------------------------------CCeEEEEeec--ChHHHHHHHHHHHHHHH
Q 042445          208 GITVGL-----------------------------------KDWLRITFAV--EPSALENGLGRMKAFYD  240 (246)
Q Consensus       208 g~~f~~-----------------------------------~~~iRls~~~--~~~~l~~~~~~l~~~~~  240 (246)
                      |.+|..                                   .+.+|+|++.  +.++++++++.|.+.+.
T Consensus       418 G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~~~~~  487 (805)
T PLN02724        418 GCFCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFIISSFV  487 (805)
T ss_pred             ccccCchHHHHHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcCccCCHHHHHHHHHHHHHHhh
Confidence            988752                                   2789999995  88999999999988764

>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.04  E-value=7.8e-09  Score=85.26  Aligned_cols=197  Identities=16%  Similarity=0.148  Sum_probs=128.3

Q ss_pred             CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCCCcch
Q 042445           23 GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQD  102 (246)
Q Consensus        23 ~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~~  102 (246)
                      ..+++.+..|..+|+++++++|.||++.+|...+... ....+.-   ..-+-++.|.+ ..|+.+|..++.+       
T Consensus       223 p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~~~-a~e~~~~---~PDI~t~aK~L-~gGlPigA~~v~~-------  290 (433)
T KOG1401|consen  223 PADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGYGW-AQEYFGV---TPDITTVAKPL-GGGLPIGATGVRD-------  290 (433)
T ss_pred             cCCHHHHHHHHHHHhhcCceEEeehhhhCccccchHH-HHHHhCc---CCcceeehhhc-cCCceeEEEeehH-------
Confidence            3567899999999999999999999999988766432 2112221   12266788995 6779999999999       


Q ss_pred             hhHHHHHHHH-h---hhcCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEE
Q 042445          103 SGIVDSIKIF-L---NISSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMV  177 (246)
Q Consensus       103 ~~~~~~l~~~-~---~~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~  177 (246)
                       ++.+.+... .   ..+++.||+++.++...|..-. ..+++.+..+-+..++.+.+.+.+.+.... ..-.-++++..
T Consensus       291 -kV~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l~~l~~~e~~k~vs~~~k~L~~~l~e~~~~~~~~i~-g~~grgl~ig~  368 (433)
T KOG1401|consen  291 -KVAEMISPGDHLYHGGTFSGNPLACSAGIKVLDELKDPETLKNVSKIGKELRKLLDEYLKKTPNSIC-GGVGRGLVIGF  368 (433)
T ss_pred             -HHHhhcCCCCccccCcccCCChhhhhHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccCCCcee-eeeeeEEEEEE
Confidence             888888654 2   4567899999999999998543 577888888888888888888877432221 11233555555


Q ss_pred             EeccccccCCCChHHHHHHHHH-------hcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHHHHHH
Q 042445          178 KLNYSLLEGINSDMEFALKLAK-------EESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~ll~-------~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~~~~  242 (246)
                      .+..+... ..+.....-.+..       +.|+.+.|-+        -+++..++|.++++++.+.+.+.++
T Consensus       369 ~~~~p~~~-~~d~~~~~~ll~~~~~~~~~~~gv~i~P~~--------~l~~~~~~E~i~~~l~i~~~~l~~~  431 (433)
T KOG1401|consen  369 EFEGPVYK-FADAAREQGLLILTLGKGLLEEGVRIAPIY--------LLTVEHTPEVIQRLLTILEKVLSAL  431 (433)
T ss_pred             EEeechhh-hhhhhhhhhHHHHHHhcccccceEEEeccc--------cccccCcHHHHHHHHHHHHHHHHHh
Confidence            44332211 1112221111111       2234444411        1223335888999999999988765

>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []

Probab=99.03  E-value=3e-08  Score=83.72  Aligned_cols=195  Identities=18%  Similarity=0.101  Sum_probs=116.1

Q ss_pred             hhHHHHHHHHHHcCCEEEEccccC-CcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeC------CCCC
Q 042445           27 SFVSPIAETAKKLGIMVIANEVYG-HLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSD------PNGI   99 (246)
Q Consensus        27 ~~~~~l~~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~------~~~~   99 (246)
                      -+++++.++|.+.|++++.|-+|. ++..++-...|+...     -|+.+|..|.|.  |=|-|.|.+..      ...-
T Consensus       184 ~d~~~~reIad~vga~l~~D~sH~~GLIa~g~~~~P~~~A-----Dvvt~sThKtl~--GPrggiI~~~~~~~~~~~~~~  256 (399)
T PF00464_consen  184 IDFKRFREIADEVGAYLMADISHIAGLIAGGLFPNPFPYA-----DVVTGSTHKTLR--GPRGGIILTNKGSKNVDKKGK  256 (399)
T ss_dssp             --HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS--GCCTS-----SEEEEESSGGG---SSS-EEEEES-SEEEE-TTS-
T ss_pred             cCHHHHHHHHHhcCcEEEecccccccceehheecCccccc-----eEEEeecccccc--ccCceEEEEcCCccccCCccc
Confidence            357899999999999999999988 444454333344322     188899999965  44567777770      0000


Q ss_pred             cchhhHHHHHHHHhhhcC--CCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEE
Q 042445          100 LQDSGIVDSIKIFLNISS--DPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMV  177 (246)
Q Consensus       100 ~~~~~~~~~l~~~~~~~~--~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~  177 (246)
                      ..+.++.+++.....++.  ++..-..++.+.++.+......++..++.-+|++.|.+.|.+. |+..+........+|+
T Consensus       257 ~~~~~l~~~I~~avfP~~qg~~h~~~iaalAval~ea~~~~fk~Ya~qVv~NAk~La~~L~~~-G~~v~~ggTd~H~vlv  335 (399)
T PF00464_consen  257 EIDEELAEKIDSAVFPGLQGGPHMHRIAALAVALKEALSPEFKEYAKQVVKNAKALAEALQER-GFKVVTGGTDNHQVLV  335 (399)
T ss_dssp             EEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-T-EEGGGS-SSSEEEE
T ss_pred             ccHHHHHHHhccccCCCcccCcchhHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhhC-CcEEEECCCCCCeEEE
Confidence            000178888887754332  2223233344444543223445778888899999999999987 6665444455788888


Q ss_pred             EeccccccCCCChHHHHHHHHHhcCeEEec----CCCcC-CCCeEEEEeec------ChHHHHHHHHH
Q 042445          178 KLNYSLLEGINSDMEFALKLAKEESVIVLP----GITVG-LKDWLRITFAV------EPSALENGLGR  234 (246)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p----g~~f~-~~~~iRls~~~------~~~~l~~~~~~  234 (246)
                      ++....+     +...+.+.|.+.||.+..    +..-. .+..||++...      .++++++..+.
T Consensus       336 d~~~~~~-----~g~~a~~~Le~~gI~vnkn~iP~d~~~~~~sGlRlGT~~lT~rG~~e~dm~~iA~~  398 (399)
T PF00464_consen  336 DLRSFGI-----DGKEAEKALEEAGIIVNKNTIPGDRSPFVPSGLRLGTPALTRRGMKEEDMKEIAEL  398 (399)
T ss_dssp             EGGGGTS------HHHHHHHHHHTTEE-EEE--TTTSTTTT-SEEEEESHHHHHTT--HHHHHHHHHH
T ss_pred             Eeccccc-----chHHHHHHHHhcCeeecccccCCCCCCCCCCEEEECCHHHHhCCCCHHHHHHHHhh
Confidence            8865422     566678899999999854    33111 15789998652      56666666554

The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....

>PLN02271 serine hydroxymethyltransferase

Probab=99.02  E-value=5.2e-08  Score=84.87  Aligned_cols=211  Identities=10%  Similarity=0.002  Sum_probs=131.8

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCC-ccccccCCcccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPF-VSMGVFGSIVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      ++..-.||  ..++   ++++.++|+++|+++++|.++......+..+ .++..     --++.+|..|.+.+|  |-|.
T Consensus       303 I~g~Sayp--r~~D---~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~~sP~~~-----aDvvt~TTHKtLrGP--rGG~  370 (586)
T PLN02271        303 ICGGSSYP--REWD---YARFRQIADKCGAVLMCDMAHISGLVAAKECVNPFDY-----CDIVTSTTHKSLRGP--RGGI  370 (586)
T ss_pred             EECchhcc--CcCC---HHHHHHHHHHcCCEEEEECcccccccccCcCCCCCcC-----CcEEEeCCcccCCCC--CceE
Confidence            44333556  3444   7888999999999999999999665543322 12221     228899999997544  3377


Q ss_pred             EEeeCCCC------------CcchhhHHHHHHHHhhhcC--CCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 042445           91 LVTSDPNG------------ILQDSGIVDSIKIFLNISS--DPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDR  156 (246)
Q Consensus        91 i~~~~~~~------------~~~~~~~~~~l~~~~~~~~--~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  156 (246)
                      +...+...            -..++++.+++...-.+..  ++..-..++.+.++.........+..++..+|.+.|.+.
T Consensus       371 I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgGphn~~IAalAvalkea~~~efk~Ya~QVv~NAkaLA~~  450 (586)
T PLN02271        371 IFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNNHIAALAIALKQVATPEYKAYMQQVKKNAQALASA  450 (586)
T ss_pred             EEecccccccccCCccccccccccHHHHHHhhcccCCccccChhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence            77754100            0000135566655532222  322223444445555333223377888889999999999


Q ss_pred             hhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcC-----CCCeEEEEee------cCh
Q 042445          157 LKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG-----LKDWLRITFA------VEP  225 (246)
Q Consensus       157 L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~-----~~~~iRls~~------~~~  225 (246)
                      |.+. |+..+........+++++....+     +-..+.+.|.+.||.+.--.-++     .++.||+...      ..+
T Consensus       451 L~~~-G~~vv~ggTdnHlvLvDl~~~g~-----~G~~ae~~Le~~~I~~Nkn~iP~d~~~~~psGiRiGT~alT~rG~~e  524 (586)
T PLN02271        451 LLRR-KCRLVTGGTDNHLLLWDLTTLGL-----TGKNYEKVCEMCHITLNKTAIFGDNGTISPGGVRIGTPAMTSRGCLE  524 (586)
T ss_pred             HHHC-CCeEeeCCCCcceeeecCcccCC-----CHHHHHHHHHHcCeEeccccCCCCCCCCCCCcccccCHHHHhcCCCc
Confidence            9876 66644444456788877755322     55777889999999885422221     1689999754      267


Q ss_pred             HHHHHHHHHHHHHHH
Q 042445          226 SALENGLGRMKAFYD  240 (246)
Q Consensus       226 ~~l~~~~~~l~~~~~  240 (246)
                      +++++..+.|.++++
T Consensus       525 ~d~~~iA~~i~~~~~  539 (586)
T PLN02271        525 SDFETIADFLLRAAQ  539 (586)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            889998888888876

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=99.02  E-value=2.3e-08  Score=84.44  Aligned_cols=192  Identities=16%  Similarity=0.109  Sum_probs=123.2

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      .+++-.|.||+.++        ++++.||+++++|-+.+.....    ..+..+   +  +.+.|.-|.||.+|  +|.+
T Consensus       143 ~~~h~~t~tG~~~~--------~i~~~~g~~~~VDa~qs~g~~~----idv~~~---~--~~~ss~~K~lGP~G--~g~l  203 (355)
T cd00611         143 HYCSNETIHGVEFD--------EVPDTGGVPLVADMSSNILSRP----IDVSKF---G--VIYAGAQKNLGPAG--VTVV  203 (355)
T ss_pred             EEeCCcccccEEcc--------eecccCCCeEEEEccccccCCC----CCHHHh---C--EEEeecccccCCCc--eEEE
Confidence            55566689999743        3445599999999988753321    122222   2  45566789998777  7888


Q ss_pred             EeeCCCCCcchhhHHHHHHHH-----------h--hhcCCCCchHHHHHHHHHhhchHH-HHHHHHHHHHHHHHHHHHHh
Q 042445           92 VTSDPNGILQDSGIVDSIKIF-----------L--NISSDPATFIQGAVPQILEKTEEE-FFSKIIDILRETADKCCDRL  157 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~-----------~--~~~~~~~~~~q~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L  157 (246)
                      ++++        ++++++...           .  ....++|....+++.++++.-.+. -++.+.++.++..+.+.+.|
T Consensus       204 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l  275 (355)
T cd00611         204 IVRK--------DLLGKARKITPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTI  275 (355)
T ss_pred             EECH--------HHHhhcccCCCCcccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence            8887        666543321           0  012255666777777777753344 48888999999999999999


Q ss_pred             hcCCCCc-cccCC--CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHH
Q 042445          158 KEIPCIT-CPKKP--EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGL  232 (246)
Q Consensus       158 ~~~~~~~-~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~  232 (246)
                      ++++|+. ....+  ..+..+.+.++...      ..+.....+.+.|+.+.++..  ..+.+|+|+..  +.+++++++
T Consensus       276 ~~~~gl~~~~~~~~~rs~~vvsf~~~~~~------l~~~~~~~~~r~G~~~~~~~~--~~g~vR~S~~~~nt~edi~~l~  347 (355)
T cd00611         276 DNSNGFYRGPVDKRARSRMNVPFRLGKEE------LEKEFLKEAEAAGMIGLKGHR--SVGGIRASIYNALSLEGVQALA  347 (355)
T ss_pred             HhCccccccCCCHHHcCceEEEEEcCChh------hhHHHHHHHHHCCCcccCCCc--ccCeEEEEccCCCCHHHHHHHH
Confidence            9997752 11111  22233444443210      113333466789997655554  24789999996  899999998


Q ss_pred             HHHHHH
Q 042445          233 GRMKAF  238 (246)
Q Consensus       233 ~~l~~~  238 (246)
                      +.|+++
T Consensus       348 ~al~~~  353 (355)
T cd00611         348 DFMKEF  353 (355)
T ss_pred             HHHHHH
Confidence            888774

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>PRK04311 selenocysteine synthase; Provisional

Probab=98.98  E-value=5.7e-08  Score=84.31  Aligned_cols=220  Identities=15%  Similarity=0.058  Sum_probs=127.0

Q ss_pred             hhhhhhhccc----cccCCcCCC--ccCCChhhHHHHHHHHHHcCCEEEEccccCCcc----cCCCCCccccccCCcccE
Q 042445            2 ELINQDITRE----FSDFQVFHV--GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLA----FGNTPFVSMGVFGSIVPL   71 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPt--G~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~----~~~~~~~~~~~~~~~~~~   71 (246)
                      +.+++.++++    +..+++||+  |.. ..-++++|+++|++||+++++|...+.+.    ++-.....+......+--
T Consensus       207 ~dle~aI~~~TklV~~vh~sN~~i~G~~-~~~dl~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p~~~~~l~~GaD  285 (464)
T PRK04311        207 RDYEQAINENTALLLKVHTSNYRIEGFT-KEVSLAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEPTVQELLAAGVD  285 (464)
T ss_pred             HHHHHhcCccCeEEEEEcCCCccccccC-CcCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCCchhhHHhcCCc
Confidence            3456666654    778889994  422 22359999999999999999999543221    110001111111112233


Q ss_pred             EEEcccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhc---hH--------HHH
Q 042445           72 LTLGSISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKT---EE--------EFF  139 (246)
Q Consensus        72 i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~---~~--------~~~  139 (246)
                      +++.|.+|.+++|.  .|++++.+        +++++++.. ..-...+......+....+...   .+        .-+
T Consensus       286 iv~fSg~K~LgGp~--~G~i~g~~--------~li~~l~~~~~~r~lr~dk~~l~~l~~~l~~~~~~~~~~~~i~~l~~l  355 (464)
T PRK04311        286 LVTFSGDKLLGGPQ--AGIIVGKK--------ELIARLKKHPLKRALRVDKLTLAALEATLRLYLDPEKLAEEIPTLRLL  355 (464)
T ss_pred             EEEecCcccccCCc--eEEEEEcH--------HHHHHHhhchhHHHHhcchHHHHHHHHHHHHHhChhhhhhhCcHHHHh
Confidence            88999999987774  79999987        888887742 1111244555555555555411   11        224


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCC--CCc-cccC----------CCCc-eEEEEEeccccccCCCChHHHHHHHHHhcCeEE
Q 042445          140 SKIIDILRETADKCCDRLKEIP--CIT-CPKK----------PEGS-MFVMVKLNYSLLEGINSDMEFALKLAKEESVIV  205 (246)
Q Consensus       140 ~~~~~~~~~~~~~l~~~L~~~~--~~~-~~~~----------~~~g-~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v  205 (246)
                      ....+.++++++.+.+.|+..+  ++. .+..          |.-. ...-+.++...     -+...+.+.|++....|
T Consensus       356 ~~~~~~~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~gggs~p~~~~~~~~v~~~~~~-----~~~~~l~~~lr~~~~~i  430 (464)
T PRK04311        356 TRSPEELRARAERLAAALKAALGAAFAVEVVPSFSQVGGGSLPVDRLPSAAVTLTPKD-----RSLEALAARLRLLPPPV  430 (464)
T ss_pred             cCCHHHHHHHHHHHHHHHHhccCCCeeEEEEEccCccCCCCCcCCCCCeEEEEEeCCC-----CCHHHHHHHHhcCCCCE
Confidence            4445677788999999997743  221 1111          1111 11222233221     14566677787755433


Q ss_pred             ecCCCcCCCCeEEEEeec-ChHHHHHHHHHHHHHHH
Q 042445          206 LPGITVGLKDWLRITFAV-EPSALENGLGRMKAFYD  240 (246)
Q Consensus       206 ~pg~~f~~~~~iRls~~~-~~~~l~~~~~~l~~~~~  240 (246)
                      ..-   -.++.+.+-+.. .+++++..+++|.+.+.
T Consensus       431 ~~r---~~~~~~~ld~r~~~~~~~~~~~~~~~~~~~  463 (464)
T PRK04311        431 IGR---IEDGRLLLDLRTLEEEDEERLAAALLEALN  463 (464)
T ss_pred             EEE---EECCEEEEEeCcCCHHHHHHHHHHHHHHhh
Confidence            321   126777788775 88888888888887753

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=98.94  E-value=2.2e-07  Score=80.49  Aligned_cols=211  Identities=15%  Similarity=0.168  Sum_probs=112.0

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcc-cCCCCCccccccCCcccEEEEcc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLA-FGNTPFVSMGVFGSIVPLLTLGS   76 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~-~~~~~~~~~~~~~~~~~~i~~~s   76 (246)
                      +.+++.++++    +++   ||+|..   .++++|.++|+++|+++|+|++|+.+. +.+...   ..++.    +.+.|
T Consensus       150 ~~le~~i~~~tkaVi~~---~~~G~p---~dl~~I~~la~~~gi~vIeDaa~a~G~~~~g~~~---G~~gd----~~~fS  216 (438)
T PRK15407        150 SLLEAAVSPKTKAIMIA---HTLGNP---FDLAAVKAFCDKHNLWLIEDNCDALGSTYDGRMT---GTFGD----IATLS  216 (438)
T ss_pred             HHHHHHcCcCCeEEEEe---CCCCCh---hhHHHHHHHHHHCCCEEEEECccchhhhcCCeee---eccCc----eEEEe
Confidence            3455556554    333   356654   358999999999999999999998654 343322   22221    34445


Q ss_pred             c--ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCC------------------------------------
Q 042445           77 I--SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSD------------------------------------  118 (246)
Q Consensus        77 ~--sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~------------------------------------  118 (246)
                      |  +|.+.+ | .-|+++++++       ++.++++.....+..                                    
T Consensus       217 f~~~k~~~~-g-eGG~l~t~d~-------~l~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  287 (438)
T PRK15407        217 FYPAHHITM-G-EGGAVFTNDP-------LLKKIIESFRDWGRDCWCAPGCDNTCGKRFGWQLGELPFGYDHKYTYSHLG  287 (438)
T ss_pred             CCCCCCccc-c-CceEEEECCH-------HHHHHHHHHHHhCcccccccccccccccccccccccccccccccccccccc
Confidence            5  465543 2 2389988874       666655554332110                                    


Q ss_pred             CC-chHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCC-CccccCCCCc---eEE-EEEeccccccCCCChHH
Q 042445          119 PA-TFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPC-ITCPKKPEGS---MFV-MVKLNYSLLEGINSDME  192 (246)
Q Consensus       119 ~~-~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~~~~~~g---~~~-~~~~~~~~~~~~~~~~~  192 (246)
                      .| .++...++-.+.  .-+.+++..+.-+++.+.+.+.|..+++ +.....+.+.   ++. .+.++...  +  -+.+
T Consensus       288 ~n~rmsel~AAig~~--qL~~l~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~--~~Rd  361 (438)
T PRK15407        288 YNLKITDMQAAIGLA--QLEKLPGFIEARKANFAYLKEGLASLEDFLILPEATPNSDPSWFGFPITVKEDA--G--FTRV  361 (438)
T ss_pred             cccCccHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhccCCCccccCcCCCCCeeEEEEEEEEECCcC--C--CCHH
Confidence            00 011111111111  2234555556566667777777777654 2211222222   222 23343211  1  1355


Q ss_pred             HHHHHHHhcCeEEecCCCcC-----------------C-------CCeEEEEeec--ChHHHHHHHHHHHHHHH
Q 042445          193 FALKLAKEESVIVLPGITVG-----------------L-------KDWLRITFAV--EPSALENGLGRMKAFYD  240 (246)
Q Consensus       193 ~~~~ll~~~gi~v~pg~~f~-----------------~-------~~~iRls~~~--~~~~l~~~~~~l~~~~~  240 (246)
                      .+.+.|+++||...+.....                 .       .+.+-+-+..  ++++++..++.|.++++
T Consensus       362 ~l~~~L~~~GI~~~~~~~~~~~~~p~~~~~~~~~~~~~P~ae~~~~~~l~LP~~~~l~~~~v~~i~~~i~~~~~  435 (438)
T PRK15407        362 ELVKYLEENKIGTRLLFAGNLTRQPYFKGVKYRVVGELTNTDRIMNDTFWIGVYPGLTEEMLDYVIEKIEEFFG  435 (438)
T ss_pred             HHHHHHHHCCCCccccCCCccccChhhhhcCCCCCCCChHHHHHHhCeEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence            66677889999776432100                 0       1223333332  78889999999988775

>PLN02880 tyrosine decarboxylase

Probab=98.90  E-value=1.3e-07  Score=82.98  Aligned_cols=219  Identities=11%  Similarity=-0.012  Sum_probs=124.8

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCc-cccccCCcccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFV-SMGVFGSIVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~-~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      +.+-..-+||.+-+   +++|.++|++||+|+.+|-+|+++......+. .+..+..-  --+..++.|.+ +.-..+|.
T Consensus       244 vataGTT~~GaiDp---l~eI~~i~~~~~iwlHVDaA~gg~~~~~~~~~~~l~gie~a--DSit~d~HKwl-~~P~~~g~  317 (490)
T PLN02880        244 CATVGTTSSTAVDP---LLELGKIAKSNGMWFHVDAAYAGSACICPEYRHYIDGVEEA--DSFNMNAHKWF-LTNFDCSL  317 (490)
T ss_pred             EEecCCCcCcccCc---HHHHHHHHHHcCCEEEEehhhHHHHHhCHHHHHHhcCchhc--CEEEECchhhc-CCCccEEE
Confidence            44455568888766   89999999999999999999998754321111 11222111  14566789995 66678899


Q ss_pred             EEeeCCCCCcchhhHHHHHHHHhhh-cC-----------------CCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 042445           91 LVTSDPNGILQDSGIVDSIKIFLNI-SS-----------------DPATFIQGAVPQILEKTEEEFFSKIIDILRETADK  152 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~~~~-~~-----------------~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~  152 (246)
                      ++..+..      .+...+.....+ ..                 .........+...+.....+.+.+..+..-+.++.
T Consensus       318 llvr~~~------~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~~i~~~rr~~alklw~~l~~~G~~g~~~~i~~~~~lA~~  391 (490)
T PLN02880        318 LWVKDRN------ALIQSLSTNPEFLKNKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKE  391 (490)
T ss_pred             EEEeCHH------HHHHHHccCHHHhcCccccccCCCChhccCcCCCCcccHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence            9987631      222333221111 00                 00001111111123332334455555555688888


Q ss_pred             HHHHhhcCCCCccccCCCCceEEEEEeccccccC--CCC-hHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec---ChH
Q 042445          153 CCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEG--INS-DMEFALKLAKEESVIVLPGITVGLKDWLRITFAV---EPS  226 (246)
Q Consensus       153 l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~-~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~---~~~  226 (246)
                      +.+.|++.+++..+.+|..+ .+.++++......  ... +.+...++..+..+.+.+ ..+....++|+++..   +++
T Consensus       392 ~~~~l~~~~~~el~~~~~~~-iv~Fr~~~~~~~~~~~~~~n~~l~~~l~~~g~~~v~~-t~~~g~~~lR~~~~n~~tt~~  469 (490)
T PLN02880        392 FEQLVAQDSRFEVVTPRIFS-LVCFRLVPPKNNEDNGNKLNHDLLDAVNSSGKIFISH-TVLSGKYVLRFAVGAPLTEER  469 (490)
T ss_pred             HHHHHhcCCCEEEecCCceE-EEEEEEeCCCCChhhHHHHHHHHHHHHHhCCCEEEEE-EEECCEEEEEEEecCCCCCHH
Confidence            88899888888755555533 4445554321100  000 123334444344555544 444447799999984   678


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 042445          227 ALENGLGRMKAFYDRHAE  244 (246)
Q Consensus       227 ~l~~~~~~l~~~~~~~~~  244 (246)
                      +++.+++.|.+..+++..
T Consensus       470 di~~~~~~i~~~~~~~~~  487 (490)
T PLN02880        470 HVTAAWKVLQDEASKLLG  487 (490)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999988777543

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=98.90  E-value=7.6e-07  Score=74.63  Aligned_cols=208  Identities=21%  Similarity=0.233  Sum_probs=122.4

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcc-cCCCCCccccccCCcccEEEEcc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLA-FGNTPFVSMGVFGSIVPLLTLGS   76 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~-~~~~~~~~~~~~~~~~~~i~~~s   76 (246)
                      +.++++|+++    ++.   .--|...   ++++|.++|++||++||+|-+++..+ |.|+...+   ++.    +.+.|
T Consensus       113 ~~ie~aIt~~tKAIipV---hl~G~~~---dm~~i~~la~~~~l~vIEDaAqa~Ga~y~gk~vGt---~Gd----~~~fS  179 (374)
T COG0399         113 DLIEAAITPRTKAIIPV---HLAGQPC---DMDAIMALAKRHGLPVIEDAAQAHGATYKGKKVGS---FGD----IGAFS  179 (374)
T ss_pred             HHHHHHcccCCeEEEEe---hhccCCC---CHHHHHHHHHHcCCeEEEEcchhccCeecCccccc---ccc----eEEEE
Confidence            5678888875    332   2344443   58999999999999999999999554 55543322   222    33444


Q ss_pred             c--ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcC-----------------CCCchHHHHHHHHHhhchHH
Q 042445           77 I--SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISS-----------------DPATFIQGAVPQILEKTEEE  137 (246)
Q Consensus        77 ~--sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~-----------------~~~~~~q~~~~~~l~~~~~~  137 (246)
                      |  +|.++..  --|.++++++       ++.++++..+.-+.                 .++.+..+....     .-+
T Consensus       180 F~~~K~ittg--EGGav~tnd~-------ela~k~~~lr~hG~~~~~~~~y~~~~~G~N~rm~~iqAAigl~-----QL~  245 (374)
T COG0399         180 FHATKNLTTG--EGGAVVTNDE-------ELAEKARSLRNHGLSRDAVFKYLHEELGYNYRLTEIQAAIGLA-----QLE  245 (374)
T ss_pred             ecCCCCcccc--CceEEEeCCH-------HHHHHHHHHHHhCcCCCccccceeeecccccCHHHHHHHHHHH-----HHH
Confidence            4  6886655  3477888775       88888876643221                 112222222211     234


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCc---eEEE-EEeccccccCCCChHHHHHHHHHhcCe----EEecCC
Q 042445          138 FFSKIIDILRETADKCCDRLKEIPCITCPKKPEGS---MFVM-VKLNYSLLEGINSDMEFALKLAKEESV----IVLPGI  209 (246)
Q Consensus       138 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g---~~~~-~~~~~~~~~~~~~~~~~~~~ll~~~gi----~v~pg~  209 (246)
                      .+++..++-++..+...+.|++++++.....+.+.   ++++ +.++..   +  .+.+.+...|++.||    ...|..
T Consensus       246 ~l~~~~~~R~~~a~~Y~~~l~~~~~~~~p~~~~~~~~~~~~~~i~~~~~---~--~~R~~l~~~L~~~gi~~~~~~~P~~  320 (374)
T COG0399         246 RLDEINERRREIAQIYAEALKGLPGITLPPEPDGAVHAWHLYTILVDEE---G--ISRDALMESLKEAGVGAVVYFRPLH  320 (374)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCceeeeeeeEEEecCC---C--CCHHHHHHHHHhCCCCceEEeeccc
Confidence            46666666666777777788877655433333333   2222 233332   1  256677778888854    444532


Q ss_pred             CcC----------C---------CCeEEEEeec--ChHHHHHHHHHHHHHHHH
Q 042445          210 TVG----------L---------KDWLRITFAV--EPSALENGLGRMKAFYDR  241 (246)
Q Consensus       210 ~f~----------~---------~~~iRls~~~--~~~~l~~~~~~l~~~~~~  241 (246)
                      .+.          .         .+.+.+-+..  +++++++.++.|.+++.+
T Consensus       321 ~~~~~~~~~~~~~~~lp~ae~~~~r~l~LP~~p~l~~~~~~~V~~~l~~~~~~  373 (374)
T COG0399         321 LQPAYRQLGYFPEGDLPNAEDLSERILSLPLHPNLSEEDVDRVIEALKEVLGS  373 (374)
T ss_pred             cchhhhcccccccCCCchHHHHhhCeEEccCCCCCCHHHHHHHHHHHHHHhcc
Confidence            220          0         3556665553  889999999999888753

>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]

Probab=98.90  E-value=5e-07  Score=72.00  Aligned_cols=207  Identities=12%  Similarity=0.105  Sum_probs=141.3

Q ss_pred             CCccCCCh-hhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCC
Q 042445           19 HVGSGFSG-SFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPN   97 (246)
Q Consensus        19 PtG~~~~~-~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~   97 (246)
                      =.|+++|+ ...+++.+..+.+|-+.|.||+..+|..-|+.+.+....+   -+.-+-+++|- .+.|.+++.+++.+  
T Consensus       221 CGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGRvG~hyWafq~y~---fiPDIVtmgKp-mGNGhPVa~Vattk--  294 (452)
T KOG1403|consen  221 CGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGRVGSHYWAFQTYN---FIPDIVTMGKP-MGNGHPVAAVATTK--  294 (452)
T ss_pred             cCCcccCchhHHHHHHHHHhcCCCeEEeehhhhcccccchhhhhhhhhc---cccchheeccc-CCCCCeeeEEeccH--
Confidence            34556555 6889999999999999999999999887666554443332   33345567799 57899999999998  


Q ss_pred             CCcchhhHHHHHHHH---hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc-CCCCccccCCCCce
Q 042445           98 GILQDSGIVDSIKIF---LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKE-IPCITCPKKPEGSM  173 (246)
Q Consensus        98 ~~~~~~~~~~~l~~~---~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~g~  173 (246)
                            ++.+.+...   ...+++.||++.++..+.++.-.++.+........+..+.+...++. .+-+..  ...-|+
T Consensus       295 ------eIA~Af~atgv~YFNTyGGnPVsCAv~laVm~v~e~E~Lq~ha~~vG~~L~~lL~~~k~kh~~IGD--vRGvGL  366 (452)
T KOG1403|consen  295 ------EIAQAFHATGVEYFNTYGGNPVSCAVGLAVMRVCEDENLQEHAQQVGEKLEVLLRRLKQKHECIGD--VRGVGL  366 (452)
T ss_pred             ------HHHHHhccccceehhccCCCchhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhccceec--cccceE
Confidence                  888888763   22355899999999999998655677777777777777777777764 432321  224588


Q ss_pred             EEEEEeccccccCCCC---hHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHH
Q 042445          174 FVMVKLNYSLLEGINS---DMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDR  241 (246)
Q Consensus       174 ~~~~~~~~~~~~~~~~---~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~  241 (246)
                      |+-+++-+......++   ....+.++-+.++|++..-.  +.++-+.+-...  ++++.++.+..|.+.+.-
T Consensus       367 FiGIdLVkD~~tRtP~tk~A~~~v~rlke~y~VLlsaDG--Ph~NilKiKPPmCFneena~e~v~~ld~iLT~  437 (452)
T KOG1403|consen  367 FIGIDLVKDRKTRTPDTKEAHWVVNRLKELYRVLLSADG--PHRNILKIKPPMCFNEENADEFVLGLDEILTV  437 (452)
T ss_pred             EEeeeeecccccCCCcHHHHHHHHHHHHHhhhEEEecCC--CCCceeecCCCcccChhhHHHHHHHHHHHHHH
Confidence            8888875443322222   33456666777788776422  115666664432  667677777777666653

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=98.89  E-value=2.4e-07  Score=79.82  Aligned_cols=225  Identities=13%  Similarity=0.084  Sum_probs=130.1

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHc------CCEEEEccccCCccc---CCCCCccccccCCc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKL------GIMVIANEVYGHLAF---GNTPFVSMGVFGSI   68 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~------~~~ii~De~y~~~~~---~~~~~~~~~~~~~~   68 (246)
                      +.+++.+.+.    +.+..||.||.+-|   +++|.++|+++      |+++.+|-+|+++..   -+.....+.   ..
T Consensus       177 ~~L~~~i~~~t~lV~~t~g~t~tG~idp---i~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~---~~  250 (431)
T TIGR01788       177 EQVVEAVDENTIGVVCILGTTYTGEYED---VKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFR---LP  250 (431)
T ss_pred             HHHHHHHhhCCeEEEEEeCCCCCcccCC---HHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcC---CC
Confidence            4456666554    67778999999988   88888899999      999999999996542   111111111   11


Q ss_pred             ccEEEEccccccc-ccCCceEEEEEeeCCCCCcchhhHHHHHHH---Hh-----hhcCCCCchHHHHHHHHHh--hchHH
Q 042445           69 VPLLTLGSISKRG-IVPGLRLGWLVTSDPNGILQDSGIVDSIKI---FL-----NISSDPATFIQGAVPQILE--KTEEE  137 (246)
Q Consensus        69 ~~~i~~~s~sK~~-~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~---~~-----~~~~~~~~~~q~~~~~~l~--~~~~~  137 (246)
                      .---+.-|..|.+ +..  .+|.++..+..      .+.+.+..   +.     +.+...+...-.++..++.  .....
T Consensus       251 ~~DSis~s~HK~~~~P~--g~G~l~~r~~~------~l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~l~~lG~~  322 (431)
T TIGR01788       251 RVKSINVSGHKYGLVYP--GVGWVIWRDEE------ALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLRLGRE  322 (431)
T ss_pred             CceEEEECchhccCCCC--CcEEEEEeChH------HcchhheecccccCCCCCCcceecCchHHHHHHHHHHHHHhcHH
Confidence            1123556788984 444  48888887621      12222211   10     0111112222122222332  11245


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCC---cCCC
Q 042445          138 FFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGIT---VGLK  214 (246)
Q Consensus       138 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~---f~~~  214 (246)
                      -+++..+...+..+.+.+.|++++++..+.++.....+.++++...-.+.  +...+.+.|.++|+.+.....   ....
T Consensus       323 G~~~i~~~~~~la~~l~~~L~~~~~~el~~~~~~~~iV~Fr~~~~~~~~~--~~~~l~~~L~~~G~~~~~~~~p~~~~~~  400 (431)
T TIGR01788       323 GYRKIMQNSLDVARYLAEEIAKLGPFEIISDGSGIPLVAFKLKDDADPGY--TLYDLSHRLRERGWIVPAYTLPKNAEDI  400 (431)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEeeCCCCceEEEEEeCCCCCCCc--CHHHHHHHHHHCCCcccCCCCCCccCCe
Confidence            57777788888999999999998888744331223334444543110011  344456677889987533222   1123


Q ss_pred             CeEEEEeec--ChHHHHHHHHHHHHHHHHH
Q 042445          215 DWLRITFAV--EPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       215 ~~iRls~~~--~~~~l~~~~~~l~~~~~~~  242 (246)
                      -.+|+++..  +.+.++..++.|.+++..+
T Consensus       401 ~~lR~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (431)
T TIGR01788       401 VVMRIVVREGFSRDLAELLIEDIEAALAYL  430 (431)
T ss_pred             EEEEEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence            568999863  7788888888888887654

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=98.89  E-value=2.6e-07  Score=76.32  Aligned_cols=194  Identities=15%  Similarity=0.099  Sum_probs=130.7

Q ss_pred             hHHHHHHHHHHcCCEEEEccccC-CcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCCCcchhhHH
Q 042445           28 FVSPIAETAKKLGIMVIANEVYG-HLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQDSGIV  106 (246)
Q Consensus        28 ~~~~l~~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~  106 (246)
                      +++++.++|.+.|+++++|-+|- ++.-+|..+.|+..     --|+.+|..|.|.+|  |-|.|++.+.       ++.
T Consensus       182 d~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p~P~~~-----AdvVTtTTHKTlrGP--rGG~Il~~~e-------el~  247 (413)
T COG0112         182 DFKRFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLPH-----ADVVTTTTHKTLRGP--RGGIILTNDE-------ELA  247 (413)
T ss_pred             CHHHHHHHHHHhCceEEehHHHHHHHHhcccCCCCCCc-----cceEeCCcccCCCCC--CceEEEeccH-------HHH
Confidence            58899999999999999999887 45555543434333     228889999996544  5566777653       888


Q ss_pred             HHHHHHhhhcCCCCchHHHHH--HHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEeccccc
Q 042445          107 DSIKIFLNISSDPATFIQGAV--PQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLL  184 (246)
Q Consensus       107 ~~l~~~~~~~~~~~~~~q~~~--~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~  184 (246)
                      +++...-.++.-.+|..-..+  +.++.+..+...++..++.-+|++.|.+.|.+. |++.+...-....+.+++....+
T Consensus       248 kkin~aVFPg~qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~-G~~vvsGgTdnHl~lVDl~~~~~  326 (413)
T COG0112         248 KKINSAVFPGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKER-GFKVVSGGTDNHLVLVDLRSKGL  326 (413)
T ss_pred             HHhhhhcCCccCCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHc-CCeEecCCccceEEEEEcccCCC
Confidence            888876444333344433333  334443333445777778889999999999886 67643333335667777763222


Q ss_pred             cCCCChHHHHHHHHHhcCeEEec-CCCcCC-----CCeEEEEee------cChHHHHHHHHHHHHHHHH
Q 042445          185 EGINSDMEFALKLAKEESVIVLP-GITVGL-----KDWLRITFA------VEPSALENGLGRMKAFYDR  241 (246)
Q Consensus       185 ~~~~~~~~~~~~ll~~~gi~v~p-g~~f~~-----~~~iRls~~------~~~~~l~~~~~~l~~~~~~  241 (246)
                           +-+.+..+|.+.||.+.- +-.|..     +..||+...      ..++++++..+.|.++++.
T Consensus       327 -----~Gk~ae~~L~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~TtrG~~e~e~~~Ia~~I~~vl~~  390 (413)
T COG0112         327 -----TGKKAEAALERAGITVNKNAIPFDPESPFVTSGIRIGTPAVTTRGFGEAEMEEIADLIADVLDG  390 (413)
T ss_pred             -----CHHHHHHHHHHcCEeeccCCCCCCCCCCCCCccceeccHHHhhcCCCHHHHHHHHHHHHHHHhc
Confidence                 566778889999998864 222221     789999754      2678899999999888865

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=98.88  E-value=2.9e-07  Score=85.96  Aligned_cols=219  Identities=11%  Similarity=0.054  Sum_probs=133.7

Q ss_pred             hhhhhhhcc---c----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEE
Q 042445            2 ELINQDITR---E----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTL   74 (246)
Q Consensus         2 e~~~~~~~~---~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~   74 (246)
                      |.+++.+++   +    ++++|||-+|...+   +++|.++|+++|+.+++|-++......   ......++   --+++
T Consensus       654 e~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~---I~eI~~iah~~Galv~vDgAq~~a~~~---l~~p~~~G---aD~~~  724 (993)
T PLN02414        654 EELRKAAEAHKDNLAALMVTYPSTHGVYEEG---IDEICDIIHDNGGQVYMDGANMNAQVG---LTSPGFIG---ADVCH  724 (993)
T ss_pred             HHHHHHHhccCCCeEEEEEECCCccccccch---HHHHHHHHHHcCCEEEEEecCHHhccC---cCCccccC---CCEEE
Confidence            556666763   2    78899888888755   899999999999999999988632211   11111222   22777


Q ss_pred             ccccccccc----CCceEEEEEeeCCCCCcchhhHHHHHHHH------------hh--hcCCCC--c----hHHHHHHHH
Q 042445           75 GSISKRGIV----PGLRLGWLVTSDPNGILQDSGIVDSIKIF------------LN--ISSDPA--T----FIQGAVPQI  130 (246)
Q Consensus        75 ~s~sK~~~~----~g~r~G~i~~~~~~~~~~~~~~~~~l~~~------------~~--~~~~~~--~----~~q~~~~~~  130 (246)
                      +|..|.|+.    .|=.+|++.+.+        ++...+-..            ..  .+ ..+  +    ....++..+
T Consensus       725 ~s~HK~f~~P~G~GGPg~G~l~~~~--------~L~p~lPg~~v~~~~~~~~r~~~s~iG-t~~~a~~g~al~l~~A~~y  795 (993)
T PLN02414        725 LNLHKTFCIPHGGGGPGMGPIGVKK--------HLAPFLPSHPVVPTGGIPRPEKTQPLG-TISAAPWGSALILPISYTY  795 (993)
T ss_pred             ecCCccCCcCcccCCCCeeeEEEch--------hhcccCCCCccccCCCcccccCCCCcC-CccchhhhhHHHHHHHHHH
Confidence            888886552    234488887776        433333210            00  11 111  1    223334445


Q ss_pred             HhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceE--EEEEeccccccC--CCChHHHHHHHHHhcCeEEe
Q 042445          131 LEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMF--VMVKLNYSLLEG--INSDMEFALKLAKEESVIVL  206 (246)
Q Consensus       131 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~--~~~~~~~~~~ll~~~gi~v~  206 (246)
                      +.....+.+.+..+....++.++.+.|++..++. +..|.+.+|  +.+.++  .+++  ..+..+. .+.|.++||...
T Consensus       796 i~~lG~~Gl~~~a~~a~~nAnYl~~rL~~~~~~~-~~~~~~~~~hEfv~~~~--~l~~~~g~~~~di-~krL~d~Gihap  871 (993)
T PLN02414        796 IAMMGSEGLTDASKIAILNANYMAKRLEGHYPVL-FRGKNGTCAHEFIIDLR--PFKNTAGIEPEDV-AKRLMDYGFHAP  871 (993)
T ss_pred             HHHHCHhHHHHHHHHHHHHHHHHHHHHHhhCCcc-ccCCCCCeeeeEEEecc--ccccccCCCHHHH-HHHHHHcCcEEe
Confidence            5544467788888888999999999998743444 333333311  112232  1111  1134455 445559999754


Q ss_pred             cCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHHh
Q 042445          207 PGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       207 pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~~  243 (246)
                      - ..|...+++|++...  +.+++++.++.|.+..++..
T Consensus       872 t-~~~pv~~~lmiepTE~~skeelDrf~~al~~i~~e~~  909 (993)
T PLN02414        872 T-MSWPVPGTLMIEPTESESKAELDRFCDALISIREEIA  909 (993)
T ss_pred             e-eccccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHH
Confidence            3 335558899999994  78899999999988876654

>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue

Probab=98.85  E-value=1.4e-08  Score=85.13  Aligned_cols=101  Identities=18%  Similarity=0.172  Sum_probs=73.1

Q ss_pred             cCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCCCcc
Q 042445           22 SGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQ  101 (246)
Q Consensus        22 ~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~  101 (246)
                      ..++++.+++|.++|++||+++|.||++.++...|..+ ....++-...++   +++|.++. |+.+|.+++++      
T Consensus       193 ~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~-a~~~~gv~PDiv---~~gK~l~g-G~p~sav~~~~------  261 (339)
T PF00202_consen  193 IPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKFF-ASEHYGVDPDIV---TFGKGLGG-GLPISAVLGSE------  261 (339)
T ss_dssp             BEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSS-GHHHHTSSSSEE---EEEGGGGT-TSSEEEEEEEH------
T ss_pred             cccccchhhehcccccccccceecccccccccccCCcc-ceecccccCccc---ccccchhh-hhhcccccccc------
Confidence            35577899999999999999999999999997776543 333333332333   35699654 59999999998      


Q ss_pred             hhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhch
Q 042445          102 DSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTE  135 (246)
Q Consensus       102 ~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~  135 (246)
                        ++.+.+... ...+++.+|++..++.+.|+...
T Consensus       262 --~i~~~~~~~~~~~T~~g~p~~~aaa~~~l~~~~  294 (339)
T PF00202_consen  262 --EIMEAFQPGSHGSTFGGNPLSCAAALATLEILE  294 (339)
T ss_dssp             --HHHTTSCTTSSTCTTTT-HHHHHHHHHHHHHHH
T ss_pred             --hhhccccccccccccccchHhhhhhhhHHHhhc
Confidence              888777443 33455789999999999988543

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....

>KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=4.5e-08  Score=80.35  Aligned_cols=204  Identities=16%  Similarity=0.148  Sum_probs=126.1

Q ss_pred             CCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccC--CCCCccccccCCcccEEEEcccccccccCCceEEEEEeeC
Q 042445           18 FHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFG--NTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSD   95 (246)
Q Consensus        18 NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~--~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~   95 (246)
                      -+||...+   +++|+++..||...+|.||.|+....+  |++.......+..+--++++|++-+++..|   ||+++..
T Consensus       244 ~N~g~i~p---l~~iv~lk~Kyk~RvildEs~SfG~lg~~GrGvteH~~v~~~~iDiv~~sm~~alas~G---gFc~G~~  317 (467)
T KOG1358|consen  244 ANTGDICP---LPEIVKLKNKYKFRVILDESLSFGVLGKTGRGVTEHFGVPITDIDIVTASMETALASGG---GFCAGKS  317 (467)
T ss_pred             cCCCcccc---cHHHHHHHhhheEEEEEecccccccccccCccccccCCCCccceeeeeecccccccccC---ceeecce
Confidence            36778777   899999999999999999999977765  355555555555555688999999987777   8888853


Q ss_pred             CCCCcchhhHHHHHHHHh--hhcCC--CCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445           96 PNGILQDSGIVDSIKIFL--NISSD--PATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG  171 (246)
Q Consensus        96 ~~~~~~~~~~~~~l~~~~--~~~~~--~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~  171 (246)
                               .+-...+..  .+.++  .+|....++..++.  ...+-....+.++.....+...|....++.....+. 
T Consensus       318 ---------~i~~hQrLSg~~Y~fSAslPp~la~aa~~ai~--i~~~~p~~~~~L~~k~~~~H~~l~~~s~~~v~~~~~-  385 (467)
T KOG1358|consen  318 ---------FIADHQRLSGSGYCFSASLPPYLAGAAIKAIL--IEEWNPEIVQPLRAKVAKFHAALSSNSGFIVSGSPE-  385 (467)
T ss_pred             ---------eeEeeeeccccceeeeccCchhhhhhHHHHHH--HHhhCcchhhhhhccccccchhhhcCCceEEecCcC-
Confidence                     222222222  22223  33333333333333  233334455667777788888887755555323333 


Q ss_pred             ceEEEEEeccccccCCCChH----HHHHHHHHhcCeEEecCCCc------CCCCeEEEEeec--ChHHHHHHHHHHHHHH
Q 042445          172 SMFVMVKLNYSLLEGINSDM----EFALKLAKEESVIVLPGITV------GLKDWLRITFAV--EPSALENGLGRMKAFY  239 (246)
Q Consensus       172 g~~~~~~~~~~~~~~~~~~~----~~~~~ll~~~gi~v~pg~~f------~~~~~iRls~~~--~~~~l~~~~~~l~~~~  239 (246)
                      +..+.+.+..... .-.++.    +.+...+ ..|+.+....+.      ..+..+|+++..  ++++++++.+.|++..
T Consensus       386 SPi~hl~l~~~~~-s~e~e~~lL~eivd~~i-~~~~ll~~a~~~~~~e~~~~~pSiri~~~a~~seeel~ra~~~ik~~~  463 (467)
T KOG1358|consen  386 SPIIHLQLERSYG-SREKEEKLLEEIVDKCI-AEGVLLTRAKYLEKLERCPIPPSIRICVSAGMSEEELERAAELIKEVA  463 (467)
T ss_pred             Cceeeeeeccccc-chHHHHHHHHHHHHHHH-hhcceehhhhhhhhcccCCCCCcEEEEEeCCCCHHHHHHHHHHHHHHH
Confidence            3333444554321 000111    2233333 348887765443      226789999995  8999999999998876


Q ss_pred             HH
Q 042445          240 DR  241 (246)
Q Consensus       240 ~~  241 (246)
                      ..
T Consensus       464 ~~  465 (467)
T KOG1358|consen  464 SA  465 (467)
T ss_pred             Hh
Confidence            44

>PRK02769 histidine decarboxylase; Provisional

Probab=98.76  E-value=1.7e-06  Score=73.59  Aligned_cols=193  Identities=13%  Similarity=0.088  Sum_probs=120.4

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcC---CEEEEccccCCcccCCC-CCccccccCCcccEEEEcccccccccCCce
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLG---IMVIANEVYGHLAFGNT-PFVSMGVFGSIVPLLTLGSISKRGIVPGLR   87 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~---~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r   87 (246)
                      +.+..+|+||.+-+   +++|.++|+++|   +++++|-+|+.+...-. ....+. +.. .--.+..|..|.+++| ..
T Consensus       165 v~t~gtt~tG~idp---i~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~~~d-~~~-~vDsis~s~HK~~~~P-~g  238 (380)
T PRK02769        165 FANIGTTMTGAIDN---IKEIQEILKKIGIDDYYIHADAALSGMILPFVNNPPPFS-FAD-GIDSIAISGHKFIGSP-MP  238 (380)
T ss_pred             EEEeCCCCCcccCC---HHHHHHHHHHhCCCceEEEEEecccceeecccCccccCC-ccC-CCCEEEECCcccCCCC-CC
Confidence            67888999999977   888889999998   69999999997654210 000111 111 1225566788996533 46


Q ss_pred             EEEEEeeCCCCCcchhhHHHHHHHHhh--------hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc
Q 042445           88 LGWLVTSDPNGILQDSGIVDSIKIFLN--------ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKE  159 (246)
Q Consensus        88 ~G~i~~~~~~~~~~~~~~~~~l~~~~~--------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~  159 (246)
                      +|.++..+        +..+.+.....        ...+-+.....++...|......-.++..+...+..+++.+.|++
T Consensus       239 ~G~l~~r~--------~~~~~~~~~~~yl~~~d~t~~GSR~g~~~l~lw~aL~~lg~~G~~~~~~~~~~la~~l~~~L~~  310 (380)
T PRK02769        239 CGIVLAKK--------KYVERISVDVDYIGSRDQTISGSRNGHTALLLWAAIRSLGSKGLRQRVQHCLDMAQYAVDRLQA  310 (380)
T ss_pred             cEEEEEeh--------hhhhhcccCccccCCCCCCccCCCCcHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            89998887        55554421111        111223344555555665444566788888888999999999987


Q ss_pred             CCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHH
Q 042445          160 IPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKA  237 (246)
Q Consensus       160 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~  237 (246)
                      . |+..+..|. .+.+.  |+..       +.+.    .  +|..+.+-     ++++|+.+..  +.+.+++.++.|..
T Consensus       311 ~-g~~~~~~p~-~~~v~--f~~~-------~~~~----~--~~w~l~~~-----~~~~hi~~~~~~~~~~~~~f~~dl~~  368 (380)
T PRK02769        311 N-GIPAWRNPN-SITVV--FPCP-------SERI----W--KKWHLATS-----GNQAHIITMPHHNKQQIDSLIDELIF  368 (380)
T ss_pred             C-CCEEEcCCC-ceEEE--EcCC-------CHHH----H--hCeeEccc-----CCEEEEEECCCCCHHHHHHHHHHHHH
Confidence            5 676566665 33333  4432       2221    1  34333321     3588999885  77778888877776


Q ss_pred             HHH
Q 042445          238 FYD  240 (246)
Q Consensus       238 ~~~  240 (246)
                      .+.
T Consensus       369 ~~~  371 (380)
T PRK02769        369 DLK  371 (380)
T ss_pred             HHh
Confidence            654

>PLN02590 probable tyrosine decarboxylase

Probab=98.76  E-value=1.7e-06  Score=76.41  Aligned_cols=219  Identities=14%  Similarity=0.069  Sum_probs=123.8

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCc-cccccCCcccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFV-SMGVFGSIVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~-~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      +.+-..-+||.+   +.+++|.++|++||+|+.+|-+|+++..-...+. -+..+..- .-+ .-++.|.+ ....-+|.
T Consensus       292 vaTaGTT~tGai---Dpl~~Ia~i~~~~g~WlHVDaA~GG~al~~~~~r~~~~Gie~A-DSi-t~D~HK~l-~~p~~cg~  365 (539)
T PLN02590        292 CATVGTTSSAAV---DPLVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIENA-DSF-NMNAHKWL-FANQTCSP  365 (539)
T ss_pred             EEEeCCCCCccc---CCHHHHHHHHHHhCCeEEEecchhhhhhcChhhHHHhcCCccC-CEE-EECchhhc-CcCcCEEE
Confidence            344444566666   5699999999999999999999998764321111 11222111 223 33478995 55578898


Q ss_pred             EEeeCCCCCcchhhHHHHHHH---Hhhh--------------cC-CCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 042445           91 LVTSDPNGILQDSGIVDSIKI---FLNI--------------SS-DPATFIQGAVPQILEKTEEEFFSKIIDILRETADK  152 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~---~~~~--------------~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~  152 (246)
                      +++.+..      .+.+.+..   +...              +. ..-.+....+...|.....+-+++..+..-+.++.
T Consensus       366 llvr~~~------~l~~a~~~~~~YL~~~~~~~~~~~d~~d~~i~lsRr~raLklW~~lr~~G~~G~~~~i~~~~~lA~~  439 (539)
T PLN02590        366 LWVKDRY------SLIDALKTNPEYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKH  439 (539)
T ss_pred             EEecCHH------HHHHHhhcCHHHhCCcccccccCCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8887731      22222211   1100              00 01112222223333332345677777777888999


Q ss_pred             HHHHhhcCCCCccccCCCCceEEEEEeccccccC--CCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec---ChHH
Q 042445          153 CCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEG--INSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV---EPSA  227 (246)
Q Consensus       153 l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~---~~~~  227 (246)
                      +.+.|++.+++..+.+|.- ..+++++.......  ...-...+.+.+.+.|.............++|+++..   ++++
T Consensus       440 ~~~~l~~~~~fel~~~~~l-~iVcFr~~~~~~~~~~~~~ln~~l~~~l~~~G~~~vs~t~~~g~~~lR~~i~n~~T~~~d  518 (539)
T PLN02590        440 FEDYVAQDPSFEVVTTRYF-SLVCFRLAPVDGDEDQCNERNRELLAAVNSTGKIFISHTALSGKFVLRFAVGAPLTEEKH  518 (539)
T ss_pred             HHHHHhcCCCeEEecCCce-EEEEEEecCCCCCHHHHHHHHHHHHHHHHhCCCEEEEeeEECCEEEEEEEecCCCCCHHH
Confidence            9999998888875444442 33334443211000  0001123333444455544443444446789999984   7899


Q ss_pred             HHHHHHHHHHHHHHHh
Q 042445          228 LENGLGRMKAFYDRHA  243 (246)
Q Consensus       228 l~~~~~~l~~~~~~~~  243 (246)
                      ++.+++.|.+...++-
T Consensus       519 v~~~~~~i~~~a~~~~  534 (539)
T PLN02590        519 VTEAWQIIQKHASKFT  534 (539)
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999988876653

>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]

Probab=98.75  E-value=2.3e-07  Score=77.79  Aligned_cols=82  Identities=16%  Similarity=0.056  Sum_probs=62.8

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.++++    .+..-||-+|++.|   +++|.++|++.|+.+++|-+++-..    -..-+..++.+   ++..|.
T Consensus       172 ~~~~~~i~~~T~lv~I~~Vnn~~gv~~P---v~EI~~icr~~~v~v~~DaAQavG~----i~vDV~eln~D---~~s~s~  241 (428)
T KOG1549|consen  172 SKLREAIRSKTRLVSIMHVNNEIGVLQP---VKEIVKICREEGVQVHVDAAQAVGK----IPVDVQELNAD---FLSISA  241 (428)
T ss_pred             HHHHHhcCCCceEEEEEecccCcccccc---HHHHHHHhCcCCcEEEeehhhhcCC----ccccHHHcCch---heeeec
Confidence            4566777776    55666799999999   8999999999999999999988522    22233334332   667778


Q ss_pred             ccccccCCceEEEEEeeC
Q 042445           78 SKRGIVPGLRLGWLVTSD   95 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~   95 (246)
                      .|.||++|  +|++.+..
T Consensus       242 HK~ygp~~--iGaLYvr~  257 (428)
T KOG1549|consen  242 HKIYGPPG--IGALYVRR  257 (428)
T ss_pred             ccccCCCc--ceEEEEcc
Confidence            89999999  99999875

>PRK12566 glycine dehydrogenase; Provisional

Probab=98.74  E-value=1.1e-06  Score=81.01  Aligned_cols=221  Identities=9%  Similarity=0.008  Sum_probs=123.7

Q ss_pred             hhhhhhhc---cc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEE
Q 042445            2 ELINQDIT---RE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTL   74 (246)
Q Consensus         2 e~~~~~~~---~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~   74 (246)
                      +.+++.+.   .+    ++++| |-.|. + .+.+++|+++++++|+++++|-++.....   .......++   --++.
T Consensus       629 e~L~a~I~~~~~~laaVmiT~P-nt~Gv-~-e~~V~eI~~iah~~Galv~vDgA~~~a~~---~l~~Pg~~G---ADi~~  699 (954)
T PRK12566        629 DDLKAKAAAAGDRLSCLMITYP-STHGV-Y-EEGIREICEVVHQHGGQVYMDGANLNAQV---GLARPADIG---ADVSH  699 (954)
T ss_pred             HHHHHHhhccCCCEEEEEEEec-CcCce-e-cchHHHHHHHHHHcCCEEEEEeeChhhcc---CCCChhhcC---CCEEE
Confidence            45566655   23    45566 44443 3 46699999999999999999998752111   111112222   23888


Q ss_pred             ccccccccc----CCceEEEEEeeCCCCCcchhhHHHHHHHHh-----------hhcC---CCCchHHHHHHHHHhhchH
Q 042445           75 GSISKRGIV----PGLRLGWLVTSDPNGILQDSGIVDSIKIFL-----------NISS---DPATFIQGAVPQILEKTEE  136 (246)
Q Consensus        75 ~s~sK~~~~----~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~-----------~~~~---~~~~~~q~~~~~~l~~~~~  136 (246)
                      +++.|.|+.    .|.-+|.+.+.+        .+...+....           ...+   ..+.....++..++.....
T Consensus       700 ~s~HKtf~~P~G~GGP~vG~iav~~--------~L~pfLp~~P~~d~~G~~~r~ga~S~~~~gsa~~l~~A~~Yi~~lG~  771 (954)
T PRK12566        700 MNLHKTFCIPHGGGGPGMGPIGVRA--------HLAPFVANHPVVPVEGPDPNNGAVSAAPWGSASILPISWMYIAMMGP  771 (954)
T ss_pred             ecCCcccCcCccCCCCccchhhhhh--------hhhhhccCCCCcCCCCCCCCCCceeecccchHHHHHHHHHHHHHHCH
Confidence            889998752    234456655554        3333333210           0010   1111122333344443334


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEeccccccC--CCChHHHHHHHHHhcCeEEecCCCcCCC
Q 042445          137 EFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEG--INSDMEFALKLAKEESVIVLPGITVGLK  214 (246)
Q Consensus       137 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~ll~~~gi~v~pg~~f~~~  214 (246)
                      + +.+....-..+++++.+.|++..++. +..+++.+|--+.+....+++  ..+..+. .+.|.++||...- .+|...
T Consensus       772 e-Lk~aa~~ailnAnYla~rL~~~~~v~-~~~~~~~~~hEfii~~~~l~~~~g~~~~dv-akRL~d~Gihapt-~~fPv~  847 (954)
T PRK12566        772 Q-LADASEVAILSANYLANQLGGAFPVL-YRGRNERVAHECILDLRPLKAQTGISEEDV-AKRLMDYGFHAPT-MSFPVP  847 (954)
T ss_pred             H-HHHHHHHHHHHHHHHHHHhHhhCCCC-cCCCCCCeeeEEEEEccccccccCCCHHHH-HHHHHHCCcEEeE-EeeccC
Confidence            4 77777766788889999997733443 322222322222122111111  0134444 4455599987544 455558


Q ss_pred             CeEEEEeec--ChHHHHHHHHHHHHHHHHHh
Q 042445          215 DWLRITFAV--EPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       215 ~~iRls~~~--~~~~l~~~~~~l~~~~~~~~  243 (246)
                      +++|++...  +.+++++.++.|.+..++..
T Consensus       848 ~~LmIepTE~eskeEIDrf~eAL~~I~~e~~  878 (954)
T PRK12566        848 GTLMVEPTESESKAELDRFVEAMLSIRAEIG  878 (954)
T ss_pred             CEEEEEeeeeCCHHHHHHHHHHHHHHHHHHH
Confidence            899999994  78889999999988877643

>PLN02452 phosphoserine transaminase

Probab=98.72  E-value=6.9e-07  Score=75.45  Aligned_cols=189  Identities=16%  Similarity=0.144  Sum_probs=121.6

Q ss_pred             CCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCC
Q 042445           18 FHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPN   97 (246)
Q Consensus        18 NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~   97 (246)
                      ..||+.+.  +++++.      ++++|+|-+-+.+..    ...+..+    .+ ...|.-|.+|.+|  +|.+++++  
T Consensus       156 TstGv~~~--~~~~i~------~~~lvVDa~Ss~g~~----pidv~~~----~v-~~~saqK~lGP~G--l~~v~vr~--  214 (365)
T PLN02452        156 TIHGVEFK--DYPDVG------NVPLVADMSSNFLSK----PVDVSKY----GV-IYAGAQKNVGPSG--VTIVIIRK--  214 (365)
T ss_pred             CCCcEecC--cccccC------CCeEEEECCccccCc----ccCHHHc----CE-EEEecccccCCCC--eEEEEEcH--
Confidence            47888543  234432      389999987664331    1122222    23 3468999999898  78888887  


Q ss_pred             CCcchhhHHHHHHHH----h---------hhcCCCCchHHHHHHHHHhhchHH-HHHHHHHHHHHHHHHHHHHhhcCCCC
Q 042445           98 GILQDSGIVDSIKIF----L---------NISSDPATFIQGAVPQILEKTEEE-FFSKIIDILRETADKCCDRLKEIPCI  163 (246)
Q Consensus        98 ~~~~~~~~~~~l~~~----~---------~~~~~~~~~~q~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~  163 (246)
                            ++++++...    .         ....+++....+++..+|+...+. -++.+.++.+++++.+++.|++.+|+
T Consensus       215 ------~~l~~~~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~~~~G~  288 (365)
T PLN02452        215 ------DLIGNARPITPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDESNGF  288 (365)
T ss_pred             ------HHHhhcccCCCchhhHHHHHhcCCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence                  666544321    0         111356677777777777743333 58899999999999999999987676


Q ss_pred             -ccccCC--CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHH
Q 042445          164 -TCPKKP--EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAF  238 (246)
Q Consensus       164 -~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~  238 (246)
                       .....+  ...+.+.+.++..      +..+.+.+.++++|+...+|..-  -+.+|+|+-.  +.+.++.+++-++++
T Consensus       289 y~~~~~~~~rs~~~vsF~~~~~------~~~~~f~~~~~~~g~~~~~G~r~--~gg~R~s~yna~~~~~v~~L~~~m~~f  360 (365)
T PLN02452        289 YVCPVEKSVRSLMNVPFTLGGS------ELEAEFVKEAAKAGMVQLKGHRS--VGGMRASIYNAMPLAGVEKLVAFMKDF  360 (365)
T ss_pred             ccCCCChHHhCCeEEEEEcCCc------hhHHHHHHHHHHCCCcccCCccc--cCceEEECcCCCCHHHHHHHHHHHHHH
Confidence             211221  2445555555543      24455577799999999998864  2349999774  788777777777766


Q ss_pred             HHH
Q 042445          239 YDR  241 (246)
Q Consensus       239 ~~~  241 (246)
                      -++
T Consensus       361 ~~~  363 (365)
T PLN02452        361 QAK  363 (365)
T ss_pred             HHh
Confidence            544

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=98.69  E-value=4.5e-08  Score=73.22  Aligned_cols=73  Identities=14%  Similarity=-0.049  Sum_probs=56.5

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      ++++|+||+|...+.   ++|.++|+++|+++|+|++|..+.......    ........+++.|++|.++.  .++|++
T Consensus        97 ~~~~~~~~~g~~~~~---~~l~~~~~~~~~~li~D~a~~~~~~~~~~~----~~~~~~~d~~~~s~~K~~~~--~~~G~l  167 (170)
T cd01494          97 VITPNTTSGGVLVPL---KEIRKIAKEYGILLLVDAASAGGASPAPGV----LIPEGGADVVTFSLHKNLGG--EGGGVV  167 (170)
T ss_pred             EEecCcCCCCeEcCH---HHHHHHHHHcCCEEEEeccccccccccccc----ccccccCCEEEEEcccccCC--CceEEE
Confidence            888899999998874   888888999999999999999887654221    11122345888899999876  578998


Q ss_pred             Ee
Q 042445           92 VT   93 (246)
Q Consensus        92 ~~   93 (246)
                      ++
T Consensus       168 ~~  169 (170)
T cd01494         168 IV  169 (170)
T ss_pred             Ee
Confidence            76

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>TIGR00474 selA seryl-tRNA(sec) selenium transferase

Probab=98.68  E-value=1.6e-06  Score=75.16  Aligned_cols=215  Identities=15%  Similarity=0.047  Sum_probs=116.8

Q ss_pred             hhhhhhhccc----cccCCcCCC--ccCCChhhHHHHHHHHHHcCCEEEEccccCCcccC---CCCCcc-ccccCCcccE
Q 042445            2 ELINQDITRE----FSDFQVFHV--GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFG---NTPFVS-MGVFGSIVPL   71 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPt--G~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~---~~~~~~-~~~~~~~~~~   71 (246)
                      +.++++++++    +..+++||+  |.. ...++++|+++|+++|+++++|.....+.-.   +-+..+ +......+--
T Consensus       202 ~dle~aI~~~T~lv~~~h~sN~~~~G~~-~~~dl~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~~~~~~~GaD  280 (454)
T TIGR00474       202 KDYEDAITENTALLLKVHTSNYRIVGFT-EEVSIAELVALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTVQEVIAAGVD  280 (454)
T ss_pred             HHHHHhcCcCCEEEEEEccCcccccCCC-CCCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCcccccHhHcCCC
Confidence            3455666664    778888995  531 1234999999999999999999753322100   000111 1111111223


Q ss_pred             EEEcccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhh---chH--------HHH
Q 042445           72 LTLGSISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEK---TEE--------EFF  139 (246)
Q Consensus        72 i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~---~~~--------~~~  139 (246)
                      +++.|.+|.+++|.  .|++++.+        ++++.++...- -...+......++...+..   +.+        +-+
T Consensus       281 iv~fSg~K~LgGp~--~G~i~g~~--------~~i~~l~~~~l~r~lr~~k~~la~l~~~l~~~~~~~~a~~~~~~l~~l  350 (454)
T TIGR00474       281 LVTFSGDKLLGGPQ--AGIIVGKK--------ELIERLKKNPLTRALRVDKLTLAALEATLRLYLDPEKALEKIPTLRML  350 (454)
T ss_pred             EEEecCccccCCCe--EEEEEECH--------HHHHhhhhchhHHHHhhChHHHHHHHHHHHHHhCchhhhhhchHHHHh
Confidence            88899999987773  79999887        77776654310 0113333333343333321   111        223


Q ss_pred             HHHHHHHHHHHHHHHHHhhcC--CCCcc-ccCCC----Cc-------eEEEEEeccccccCCCChHHHHHHHHHhcCeEE
Q 042445          140 SKIIDILRETADKCCDRLKEI--PCITC-PKKPE----GS-------MFVMVKLNYSLLEGINSDMEFALKLAKEESVIV  205 (246)
Q Consensus       140 ~~~~~~~~~~~~~l~~~L~~~--~~~~~-~~~~~----~g-------~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v  205 (246)
                      ....+.+.++++.+.+.|+..  +++.. +....    ||       ...-+.+....     -+...+.+.|++....|
T Consensus       351 ~~~~~~~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~ggg~~p~~~l~~~~v~~~~~~-----~~~~~l~~~lr~~~~~i  425 (454)
T TIGR00474       351 TQSPEELRARAERLAKRLKAALGPGFELEIVPGLSQVGGGSLPDERLPSYAVTLTPDG-----LSAEKLEARLRELPPPI  425 (454)
T ss_pred             ccCHHHHHHHHHHHHHHHHhhccCCceEEEEEcCCcccCCCCcCCCCCeEEEEEecCC-----CCHHHHHHHHhcCCCCE
Confidence            344556677888888888763  33321 11111    11       11122233221     14556677787776444


Q ss_pred             ecCCCcCCCCeEEEEeec-ChHHHHHHHHHH
Q 042445          206 LPGITVGLKDWLRITFAV-EPSALENGLGRM  235 (246)
Q Consensus       206 ~pg~~f~~~~~iRls~~~-~~~~l~~~~~~l  235 (246)
                      ....   .++.+.+-+.. .+++++..++.|
T Consensus       426 i~r~---~~~~~~ld~r~~~~~~~~~~~~~~  453 (454)
T TIGR00474       426 IGRI---EDDRFLLDLRTLLEDEEELLIEAL  453 (454)
T ss_pred             EEEE---ECCEEEEEeCcCCHHHHHHHHHHh
Confidence            3311   26777777775 777777777665

In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=98.63  E-value=3.7e-06  Score=71.27  Aligned_cols=177  Identities=23%  Similarity=0.283  Sum_probs=101.3

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcc-cCCCCCccccccCCcccEEEEcc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLA-FGNTPFVSMGVFGSIVPLLTLGS   76 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~-~~~~~~~~~~~~~~~~~~i~~~s   76 (246)
                      +.+++.++++    +++   +.-|...   ++++|.++|+++|++||+|-+++.+. +.+..   +..++    .+.+.|
T Consensus       104 ~~~~~~i~~~t~ai~~~---h~~G~~~---d~~~i~~~~~~~~i~lIeD~a~a~g~~~~g~~---~G~~g----d~~~fS  170 (363)
T PF01041_consen  104 EALEKAITPKTKAILVV---HLFGNPA---DMDAIRAIARKHGIPLIEDAAQAFGARYKGRP---VGSFG----DIAIFS  170 (363)
T ss_dssp             HHHHHHHHTTEEEEEEE----GGGB------HHHHHHHHHHTT-EEEEE-TTTTT-EETTEE---TTSSS----SEEEEE
T ss_pred             HHHHHHhccCccEEEEe---cCCCCcc---cHHHHHHHHHHcCCcEEEccccccCceeCCEe---ccCCC----CceEec
Confidence            4456666655    332   4455544   59999999999999999999999755 33321   11222    255666


Q ss_pred             c--ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhc------------------CCCCchHHHHHHHHHhhchH
Q 042445           77 I--SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNIS------------------SDPATFIQGAVPQILEKTEE  136 (246)
Q Consensus        77 ~--sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~------------------~~~~~~~q~~~~~~l~~~~~  136 (246)
                      |  +|.+...  .-|.++++++       ++.++++.....+                  +.++.+..+.+..-|+    
T Consensus       171 f~~~K~i~~g--eGG~v~~~~~-------~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~n~rm~~~~AAigl~QL~----  237 (363)
T PF01041_consen  171 FHPTKIITTG--EGGAVVTNDP-------ELAERARALRNHGRSRDAFRRYRHELPPGYNFRMSELQAAIGLAQLK----  237 (363)
T ss_dssp             SSTTSSS-SS--S-EEEEESTH-------HHHHHHHHHTBTTEETSECSTTEESSSS--B-B-BHHHHHHHHHHHH----
T ss_pred             CCCCCCCcCC--CCeeEEecHH-------HHHHHhhhhhccCcCccccccccccccCCcccccHHHHHHHHHHHHH----
Confidence            6  6886433  2378888774       7777887654321                  1234443333333333    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCc-----eEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCC
Q 042445          137 EFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGS-----MFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGI  209 (246)
Q Consensus       137 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~  209 (246)
                       .+++..+.-+++.+.+.+.|..++++.....+.+.     +.+.+.++....    .+.+.+.+.|.+.||.+.+..
T Consensus       238 -~L~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~----~~rd~l~~~L~~~GI~~~~~~  310 (363)
T PF01041_consen  238 -RLDEIIARRRENAQRYREALAGIPGIKPPPIPDGAERSSYYRFPIRLPDEAL----ADRDELVEALRARGIETRPHY  310 (363)
T ss_dssp             -THHHHHHHHHHHHHHHHHHHTTGTTEEEEGCGTTTEEBCESSEEEEETCCGC----STHHHHHHHHHHTTBEEBCST
T ss_pred             -HhhhhHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccc----chHHHHHHHHHHCCCcccccc
Confidence             46666666678888888899888776432333322     233344543211    145666778889999998865

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>PRK05367 glycine dehydrogenase; Provisional

Probab=98.60  E-value=5.7e-06  Score=77.63  Aligned_cols=211  Identities=14%  Similarity=0.070  Sum_probs=116.4

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccccccccc----CCce
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIV----PGLR   87 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~----~g~r   87 (246)
                      ++++|++- |.+  ..++++|+++|+++|+++++|.++......   +.....++.   -++..|..|.|+.    .|=-
T Consensus       645 ~it~pst~-G~~--e~~I~eI~~i~h~~G~~v~VDgA~~~al~~---l~~pg~~GA---Di~~~s~HK~f~~P~G~GGPg  715 (954)
T PRK05367        645 MITYPSTH-GVF--EETIREICEIVHEHGGQVYLDGANMNAQVG---LARPGDIGA---DVSHLNLHKTFCIPHGGGGPG  715 (954)
T ss_pred             EEEcCCCC-eee--cCCHHHHHHHHHHcCCEEEEECcChhhccC---CCChhhcCC---CEEEecCcccCCCCcCCCCCc
Confidence            56666333 433  134999999999999999999998633211   111112222   2777888898642    2233


Q ss_pred             EEEEEeeCCCCCcchhhHHHHHHHHh-----h---hcC-CCCchHHHH----HHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 042445           88 LGWLVTSDPNGILQDSGIVDSIKIFL-----N---ISS-DPATFIQGA----VPQILEKTEEEFFSKIIDILRETADKCC  154 (246)
Q Consensus        88 ~G~i~~~~~~~~~~~~~~~~~l~~~~-----~---~~~-~~~~~~q~~----~~~~l~~~~~~~~~~~~~~~~~~~~~l~  154 (246)
                      +|++.+.+        .+...+....     .   .+. ..++..|..    +..++.....+-+++..+..-.+++++.
T Consensus       716 ~G~l~vr~--------~l~p~lpg~~v~~~~~~~~~g~v~ta~~g~al~~~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~  787 (954)
T PRK05367        716 VGPIGVKA--------HLAPFLPGHPVQIAGGETGIGAVSAAPFGSASILPISWMYIRMMGAEGLRQATEVAILNANYIA  787 (954)
T ss_pred             eEEEeecc--------cccccCCCCccCcCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Confidence            77887765        3332222110     0   000 112221211    2223333234556666666668888889


Q ss_pred             HHhhcCCCCccccCCCCc--eEEEEEecccccc-CCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHH
Q 042445          155 DRLKEIPCITCPKKPEGS--MFVMVKLNYSLLE-GINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALE  229 (246)
Q Consensus       155 ~~L~~~~~~~~~~~~~~g--~~~~~~~~~~~~~-~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~  229 (246)
                      +.|++...+. +..|.+.  .-.++++...... ++ +. +.+.+.|.++|+...- ..|...+.+|++++.  +.++++
T Consensus       788 ~~L~~~~~~~-~~~~~~~~~~e~i~~~~~~~~~~g~-~~-~di~krL~d~G~~~~t-~~~pv~~~l~i~ptE~~s~~elD  863 (954)
T PRK05367        788 KRLKDHYPVL-YTGANGRVAHECILDLRPLKESTGI-TV-DDIAKRLIDYGFHAPT-MSFPVAGTLMVEPTESESKAELD  863 (954)
T ss_pred             HHHHhhcCcc-ccCCCCCcccceEEEeecccccCCC-CH-HHHHHHHHHCCCeEee-cCCccCCEEEEEeeecCCHHHHH
Confidence            8887732332 2222211  1122223210000 11 23 4456667899997554 345558899999984  788899


Q ss_pred             HHHHHHHHHHHHHh
Q 042445          230 NGLGRMKAFYDRHA  243 (246)
Q Consensus       230 ~~~~~l~~~~~~~~  243 (246)
                      +.++.+.+..++..
T Consensus       864 r~~~al~~i~~e~~  877 (954)
T PRK05367        864 RFCDAMIAIRAEID  877 (954)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99998888776654

>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []

Probab=98.58  E-value=5.6e-07  Score=76.50  Aligned_cols=142  Identities=16%  Similarity=0.185  Sum_probs=75.1

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCc-ccCCCCCcccccc--C--CcccEEEEcccccccccCCc
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHL-AFGNTPFVSMGVF--G--SIVPLLTLGSISKRGIVPGL   86 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~-~~~~~~~~~~~~~--~--~~~~~i~~~s~sK~~~~~g~   86 (246)
                      ++++| +.-|++++   +++|+++|.++|..|++||+|+.. .|. ..+.+...+  +  ....++++.|..|.  ++++
T Consensus       173 vlt~P-TY~Gv~~d---i~~I~~~~h~~~~~llvDEAhGah~~F~-~lp~~a~~~gad~~~~~~~~vvqS~HKt--L~al  245 (417)
T PF01276_consen  173 VLTSP-TYYGVCYD---IKEIAEICHKHGIPLLVDEAHGAHFGFH-PLPRSALALGADRPNDPGIIVVQSTHKT--LPAL  245 (417)
T ss_dssp             EEESS--TTSEEE----HHHHHHHHCCTECEEEEE-TT-TTGGCS-GGGTTCSSTTSS-CTSBEEEEEEEHHHH--SSS-
T ss_pred             EEeCC-CCCeEEEC---HHHHHHHhcccCCEEEEEccccccccCC-CCccchhhccCccccccceeeeechhhc--cccc
Confidence            89999 99999987   899999999999999999999854 344 222222122  1  12357999999999  4666


Q ss_pred             eEEEEEeeCCCC-CcchhhHHHHHHHHhhh--cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh---hcC
Q 042445           87 RLGWLVTSDPNG-ILQDSGIVDSIKIFLNI--SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRL---KEI  160 (246)
Q Consensus        87 r~G~i~~~~~~~-~~~~~~~~~~l~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L---~~~  160 (246)
                      ..+.++--+... +.     .++++.+...  ++++|-+..+-+..+........-++..+...++.+.+++.+   +++
T Consensus       246 tQts~lh~~~~~~v~-----~~~~~~~l~~~~TTSPSY~lmASlD~a~~~m~~~~G~~l~~~~i~~a~~~R~~i~~~~~~  320 (417)
T PF01276_consen  246 TQTSMLHVKGDRIVD-----HERVNEALSMHQTTSPSYPLMASLDVARAQMEEEEGRELLEEAIELAEEFRKKINRLNDI  320 (417)
T ss_dssp             TT-EEEEEETCCCTT-----HHHHHHHHHHHS-SS--HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred             ccceEEEecCCCccc-----HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            666555444322 21     3444444322  224443333333322221112233344444455555566665   456


Q ss_pred             CCCcc
Q 042445          161 PCITC  165 (246)
Q Consensus       161 ~~~~~  165 (246)
                      +++.+
T Consensus       321 ~~~~~  325 (417)
T PF01276_consen  321 WGFKV  325 (417)
T ss_dssp             -SSEE
T ss_pred             ceEec
Confidence            55554

One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.

>PRK15029 arginine decarboxylase; Provisional

Probab=98.57  E-value=1.1e-05  Score=73.60  Aligned_cols=76  Identities=9%  Similarity=0.009  Sum_probs=54.9

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCc-ccCCCCCcccccc-----C-CcccEEEEcccccccccC
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHL-AFGNTPFVSMGVF-----G-SIVPLLTLGSISKRGIVP   84 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~-~~~~~~~~~~~~~-----~-~~~~~i~~~s~sK~~~~~   84 (246)
                      ++++| +.-|++++   +++|+++|+++++.+++||+|+.+ .|.+ .+.....+     . ....++++.|..|.  +|
T Consensus       317 vlt~P-TY~Gv~~d---i~~I~~~~h~~~~~llvDEAhGah~~F~~-~~p~~sa~~~~~~~~~Gad~~vvqStHKt--L~  389 (755)
T PRK15029        317 VVTNC-TYDGVCYN---AKEAQDLLEKTSDRLHFDEAWYGYARFNP-IYADHYAMRGEPGDHNGPTVFATHSTHKL--LN  389 (755)
T ss_pred             EEECC-CCcceeeC---HHHHHHHHHhcCCeEEEECccccccccCc-cccccccccccccccCCCceEEEEchhhc--cc
Confidence            89999 99999987   889999999999999999999854 4443 22211222     1 11235999999999  46


Q ss_pred             CceEEEEEee
Q 042445           85 GLRLGWLVTS   94 (246)
Q Consensus        85 g~r~G~i~~~   94 (246)
                      ++..|.++--
T Consensus       390 alTQaS~LHv  399 (755)
T PRK15029        390 ALSQASYIHV  399 (755)
T ss_pred             chhhhhhhee
Confidence            6777765543

>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]

Probab=98.55  E-value=5.5e-06  Score=67.60  Aligned_cols=193  Identities=11%  Similarity=0.053  Sum_probs=106.9

Q ss_pred             cCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCCCcc
Q 042445           22 SGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQ  101 (246)
Q Consensus        22 ~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~  101 (246)
                      .-.|++.+++|.+++++||+.+|+||+..+...+|+ +.....++-. .-.-+-+|||-| ..|   ||..-.+      
T Consensus       287 nhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk-~WaHehw~l~-~PpD~vTFSKK~-q~g---Gffh~~~------  354 (484)
T KOG1405|consen  287 NHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGK-FWAHEHWNLD-SPPDVVTFSKKF-QTG---GFFHDEE------  354 (484)
T ss_pred             ccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCc-eeeehhcCCC-CCccceehhhhh-hcC---ccccCcc------
Confidence            356889999999999999999999999998776663 3232222111 113366799997 444   5554432      


Q ss_pred             hhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEec
Q 042445          102 DSGIVDSIKIFLNISSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLN  180 (246)
Q Consensus       102 ~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~  180 (246)
                        -....-.+..+.| ...|.-...+..+++... +..++.....-....+.+.+.-++.|+...-.... |-|+-.+++
T Consensus       355 --frpn~pYrifNTW-mGdP~k~lll~~vv~~I~~~~Ll~n~~~vG~~l~~gL~~Lq~~~p~~~~~~RGr-GTF~a~d~p  430 (484)
T KOG1405|consen  355 --FRPNEPYRIFNTW-MGDPSKNLLLEEVVQEIKREDLLNNVAHVGKALLKGLLELQAKYPGKINNLRGR-GTFIAWDCP  430 (484)
T ss_pred             --cCCCchHHHhhhh-cCChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhccccc-ceEEEEeCC
Confidence              1111122222233 344444444444444322 22233222222222222222223356554333433 555555676


Q ss_pred             cccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHH
Q 042445          181 YSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYD  240 (246)
Q Consensus       181 ~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~  240 (246)
                      ...      -.+.+...++-.|+.+..+.    ...|||-.+.  .+...+-.++++.+.+.
T Consensus       431 s~~------~Rdk~i~~~~~nGv~~GGCg----~~siRfRPsLvf~~~Ha~i~l~~~~k~l~  482 (484)
T KOG1405|consen  431 SGS------IRDKLILIARLNGVNLGGCG----DKSIRFRPSLVFRKHHADIFLDIFDKILA  482 (484)
T ss_pred             ChH------HHHHHHHHHHHcCceecccc----cceeeeccceeehhhhHHHHHHHHHHHhc
Confidence            543      44556667888888764333    6677776663  67777777788777664

>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated

Probab=98.53  E-value=1.2e-05  Score=68.62  Aligned_cols=208  Identities=17%  Similarity=0.157  Sum_probs=125.8

Q ss_pred             CCccCCChhhHHHHHHHHHHcCCEEEEccccC----Cc------ccCCCCCccc-cccCCcccEEEEcccccccccC-Cc
Q 042445           19 HVGSGFSGSFVSPIAETAKKLGIMVIANEVYG----HL------AFGNTPFVSM-GVFGSIVPLLTLGSISKRGIVP-GL   86 (246)
Q Consensus        19 PtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~----~~------~~~~~~~~~~-~~~~~~~~~i~~~s~sK~~~~~-g~   86 (246)
                      --|+++|.+.++++.++|++||+.++.|-+=-    .|      .+.+.....+ ..+-.... -+.-|+||.+++| | 
T Consensus       196 ~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aD-svt~slsKglgApvG-  273 (467)
T TIGR02617       196 AGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYAD-MLAMSAKKDAMVPMG-  273 (467)
T ss_pred             CCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCC-EEEEEcCCCCCCccc-
Confidence            36899999999999999999999999997421    11      1222211111 01112222 3445799998776 4 


Q ss_pred             eEEEEEeeCCCCCcchhhHHHHHHHH----hh--hcCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhhc
Q 042445           87 RLGWLVTSDPNGILQDSGIVDSIKIF----LN--ISSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADKCCDRLKE  159 (246)
Q Consensus        87 r~G~i~~~~~~~~~~~~~~~~~l~~~----~~--~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~  159 (246)
                        |+++++++ .++   ++..+++..    ..  .+.+.+.=...+++.-|.+.. ++|+..+..+    .+++.+.|++
T Consensus       274 --g~Lag~d~-~~~---~l~~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~e~~~~~yl~~ri~q----v~yl~~~L~~  343 (467)
T TIGR02617       274 --GLLCFKDD-SFF---DVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRINQ----VQYLVNGLEE  343 (467)
T ss_pred             --ceEEecch-hHH---HHHHHHHhhcccccCCcCcCchhHHHHHHHHhhhhhcccHHHHHHHHHH----HHHHHHHHHh
Confidence              55555552 111   223333321    11  222667777777777777554 4666665554    4566677776


Q ss_pred             CCCCccccCCCCceEEEEEeccccccCCC----ChHHHHHHHHHhcCeEEec-CCCc-CC-----------CCeEEEEee
Q 042445          160 IPCITCPKKPEGSMFVMVKLNYSLLEGIN----SDMEFALKLAKEESVIVLP-GITV-GL-----------KDWLRITFA  222 (246)
Q Consensus       160 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----~~~~~~~~ll~~~gi~v~p-g~~f-~~-----------~~~iRls~~  222 (246)
                      . |+. +.. -||.-++++-..- ++.++    ....++..+-.+.||-..- |+.. +.           -..+|+++.
T Consensus       344 ~-Gvp-i~~-~Gghav~iDa~~~-lphip~~~fpa~al~~~ly~~~GiR~~e~G~~~~~rd~~~~~~~~~~~el~Rlaip  419 (467)
T TIGR02617       344 I-GVV-CQQ-AGGHAAFVDAGKL-LPHIPADQFPAHALACELYKVAGIRAVEIGSLLLGRDPKTGKQLPCPAELLRLTIP  419 (467)
T ss_pred             C-CCc-EEe-cCccEEEEehhhh-CCCCChhhCcHHHHHHHHHHHcCcceEeecceecccCCCCCccCCCccceeeeccc
Confidence            5 665 345 7888888653210 01111    2566778888899987554 3321 11           268999998


Q ss_pred             c---ChHHHHHHHHHHHHHHHHH
Q 042445          223 V---EPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       223 ~---~~~~l~~~~~~l~~~~~~~  242 (246)
                      .   +.+.++..++.+....++-
T Consensus       420 Rrvyt~~h~d~v~~~~~~~~~~~  442 (467)
T TIGR02617       420 RATYTQTHMDFIIEAFKHVKENA  442 (467)
T ss_pred             cccccHhHHHHHHHHHHHHHhhh
Confidence            3   8999999999998887643

Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.

>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]

Probab=98.50  E-value=4.1e-05  Score=61.63  Aligned_cols=205  Identities=16%  Similarity=0.083  Sum_probs=129.5

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccccccccc-CCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIV-PGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-~g~r~G~   90 (246)
                      ++++-...||+.-+  -++.+-++|++|++++++|-+-+-   ++.++    .++.+..-+....--|++++ +|+  +.
T Consensus       147 fv~hgdsSTgV~q~--~~~~~g~lc~k~~~lllVD~VaSl---ggt~F----~mDewgVDvaytgSQKaL~aP~GL--si  215 (385)
T KOG2862|consen  147 FVTHGDSSTGVLQD--LLAISGELCHKHEALLLVDTVASL---GGTEF----EMDEWGVDVAYTGSQKALGAPAGL--SI  215 (385)
T ss_pred             EEEecCccccccch--HHHHHHHHhhcCCeEEEEechhhc---CCccc----eehhhcccEEEecchhhcCCCCCc--ce
Confidence            44444456777643  356677788999999999987553   22222    33443333555556688876 453  34


Q ss_pred             EEeeCCCCCcchhhHHHHHHHHhh--------------hc----------CCCCchHHHHHHHHHhhchHHHHHHHHHHH
Q 042445           91 LVTSDPNGILQDSGIVDSIKIFLN--------------IS----------SDPATFIQGAVPQILEKTEEEFFSKIIDIL  146 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~~~--------------~~----------~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~  146 (246)
                      +..++        ...++++...+              +|          ..++....+.+.++|....++-+++..++.
T Consensus       216 isfS~--------ka~~~~~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~eeGL~~~~~rH  287 (385)
T KOG2862|consen  216 ISFSD--------KALEAIRDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEEGLENSWRRH  287 (385)
T ss_pred             eecCH--------HHHHHHhhccCCceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666        67777765321              11          145666777888888866678899999999


Q ss_pred             HHHHHHHHHHhhcCCCCcccc-CCC--CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec
Q 042445          147 RETADKCCDRLKEIPCITCPK-KPE--GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV  223 (246)
Q Consensus       147 ~~~~~~l~~~L~~~~~~~~~~-~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~  223 (246)
                      ++..+.+...|+++ |+...+ .+.  -.-.-.+.++...     |-.+.+..+...+++.+..|-.......+|+.+..
T Consensus       288 ~e~s~~l~~~l~~~-GLq~fv~~e~~rlptvttv~vp~gv-----Dw~dVv~~~~~~~~vei~gglg~~~gKv~RIGl~g  361 (385)
T KOG2862|consen  288 REMSKWLKLSLEAL-GLQLFVVDEELRLPTVTTVKVPYGV-----DWKDVVAYAMSHYVVEIGGGLGPTVGKVFRIGLLG  361 (385)
T ss_pred             HHHHHHHHHHHHHh-CccceecChhhccCcceeeecCCCC-----CHHHHHHHHHHhcCEEeccccCCCcccEEEEEEee
Confidence            99999999999986 443222 111  1111122344332     34445555555557766555544447899999762


Q ss_pred             ---ChHHHHHHHHHHHHHHHH
Q 042445          224 ---EPSALENGLGRMKAFYDR  241 (246)
Q Consensus       224 ---~~~~l~~~~~~l~~~~~~  241 (246)
                         +.+.++..++.|..++.+
T Consensus       362 cna~~e~i~~v~~ll~~alq~  382 (385)
T KOG2862|consen  362 CNANVEYIDNVVELLKLALQR  382 (385)
T ss_pred             ccCCcHHHHHHHHHHHHHHhh
Confidence               788999999999988864

>PRK05367 glycine dehydrogenase; Provisional

Probab=98.50  E-value=8e-06  Score=76.69  Aligned_cols=190  Identities=14%  Similarity=0.065  Sum_probs=115.0

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccc-----cccCCc
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKR-----GIVPGL   86 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~-----~~~~g~   86 (246)
                      ++.+| |-+|.+.+   +++|+++|+++|+++++|-....+....    +...++-   -|+++|.-|.     ||+|| 
T Consensus       211 lvq~p-~~~G~i~d---~~~i~~~ah~~Gal~~vda~~~Al~~l~----~pge~Ga---Di~vgs~qkfg~P~g~GGP~-  278 (954)
T PRK05367        211 LLQYP-GTSGEVRD---YTALIAAAHARGALVAVAADLLALTLLT----PPGEMGA---DIAVGSAQRFGVPMGFGGPH-  278 (954)
T ss_pred             EEecC-CCCeeecc---HHHHHHHHHHcCCEEEEEehhhhccCCC----ChhhcCC---CEEEeeCcccCCCCCCCCCC-
Confidence            56678 99999975   9999999999999999986443222111    1122222   2777777776     77776 


Q ss_pred             eEEEEEeeCCCCCcchhhHHHHHHHH-hh-----------------------hcCCC-CchH---HHHHHHH--HhhchH
Q 042445           87 RLGWLVTSDPNGILQDSGIVDSIKIF-LN-----------------------ISSDP-ATFI---QGAVPQI--LEKTEE  136 (246)
Q Consensus        87 r~G~i~~~~~~~~~~~~~~~~~l~~~-~~-----------------------~~~~~-~~~~---q~~~~~~--l~~~~~  136 (246)
                       .|++.+.+        ++.+.+... .+                       ...+. |.-.   ..++.+.  +.....
T Consensus       279 -aGflavr~--------~~~r~lpgrivG~s~d~~g~~~~~lalqtReqhiRrekaTsNict~qaL~a~~a~~y~~~~g~  349 (954)
T PRK05367        279 -AAYFAVRD--------AYKRSMPGRIVGVSVDAAGNPALRLALQTREQHIRREKATSNICTAQVLLAVMASMYAVYHGP  349 (954)
T ss_pred             -EEEEEECH--------HHHhhCCCCeeeeecccCCCcccccccccccccccccccccccchHHHHHHHHHHHHHHHHhh
Confidence             78888776        544444211 00                       00011 1111   1111111  121224


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCe
Q 042445          137 EFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDW  216 (246)
Q Consensus       137 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~  216 (246)
                      .-+++.+++...+..++.+.|+.. |+... .+  .+|-.+.+....      +.+.+.+.|.++||.+..-    .++.
T Consensus       350 ~Gl~~Ia~~~~~la~~l~~~L~~~-G~~~~-~~--~~f~~~~~~~~~------~~~~i~~~l~~~gi~~~~~----~~~~  415 (954)
T PRK05367        350 EGLKAIARRVHRLAAILAAGLRAL-GLEVV-HD--SFFDTLTVEVGG------DAAAVLARALAAGINLRRV----DDDH  415 (954)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhc-CcccC-CC--CCCCeEEEeCCC------CHHHHHHHHHHCCceeccc----cCCE
Confidence            557788888888999999999774 66632 22  233333333211      3445566678899987331    1578


Q ss_pred             EEEEeec--ChHHHHHHHHHHH
Q 042445          217 LRITFAV--EPSALENGLGRMK  236 (246)
Q Consensus       217 iRls~~~--~~~~l~~~~~~l~  236 (246)
                      +|+|+..  ++++++..++.|.
T Consensus       416 l~is~~e~~t~~did~l~~~l~  437 (954)
T PRK05367        416 VGISLDETTTREDLAALLAVFG  437 (954)
T ss_pred             EEEEecccCCHHHHHHHHHHHc
Confidence            9999994  7889999999886

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=98.45  E-value=2.1e-05  Score=69.54  Aligned_cols=205  Identities=15%  Similarity=0.136  Sum_probs=114.4

Q ss_pred             CCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCc-cccccCCcccEEEEcccccccccCCceEEEEEe
Q 042445           15 FQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFV-SMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVT   93 (246)
Q Consensus        15 ~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~-~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~   93 (246)
                      .-++.||.+-+   +++|.++|+++|+++.+|-+|++...-...+. .+..+..  --.+..+..|.+++| ..+|.++.
T Consensus       273 aGtt~tGaiDp---l~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~--aDSit~d~HK~l~~P-~g~G~llv  346 (522)
T TIGR03799       273 AGTTETGNIDP---LDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIER--ADSVTIDAHKQLYVP-MGAGMVLF  346 (522)
T ss_pred             ecCcCCCCcCC---HHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchh--CCEEEEChhhcCCcC-cccEEEEE
Confidence            33458999877   88999999999999999999986543211110 0122211  125566789964443 55888888


Q ss_pred             eCCCCCcchhhHHHHHHHHhh------------hcCCCCc-hHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcC
Q 042445           94 SDPNGILQDSGIVDSIKIFLN------------ISSDPAT-FIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEI  160 (246)
Q Consensus        94 ~~~~~~~~~~~~~~~l~~~~~------------~~~~~~~-~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  160 (246)
                      .+.       ...+.+.....            .+...+. .....+...++.-...-+++..+...+.++.+.+.|++.
T Consensus       347 r~~-------~~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~~al~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~~  419 (522)
T TIGR03799       347 KDP-------ALMSAIEHHAEYILRKGSKDLGSHTLEGSRPGMAMLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQQ  419 (522)
T ss_pred             eCH-------HHHHHhccCcchhcCCCCCccccceeecCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            763       44443332100            0111111 111223344443334567888888889999999999998


Q ss_pred             CCCccccCCCCceEEEEEeccccccCC----------------CChHHHHHHHHHhcCeEEecCCCcC-----C--CCeE
Q 042445          161 PCITCPKKPEGSMFVMVKLNYSLLEGI----------------NSDMEFALKLAKEESVIVLPGITVG-----L--KDWL  217 (246)
Q Consensus       161 ~~~~~~~~~~~g~~~~~~~~~~~~~~~----------------~~~~~~~~~ll~~~gi~v~pg~~f~-----~--~~~i  217 (246)
                      +++..+.+|.-+ .+.+++.+..+...                ..-.+.+.+.+.+.|..........     .  ...+
T Consensus       420 ~~~el~~~p~l~-iv~Fr~~p~~~~~~l~~~~~~~~~~~~~~~~~ln~~i~~~~~~~G~~~vs~t~l~~~~~~g~~~~~l  498 (522)
T TIGR03799       420 PDFELVTEPELC-LLTYRYVPEEVQQALAKADEEQREKINELLDRLTKFIQKRQREAGKSFVSRTRLTPAQYDHQPTVVF  498 (522)
T ss_pred             CCeEEecCCCcc-EEEEEEeChhhcccccccchhhhhhHHHHHHHHHHHHHHHHHhcCCEEEEEEEecccccCCCCcEEE
Confidence            888865555443 34444432211100                0001234444555665544422221     1  2459


Q ss_pred             EEEeec---ChHHHHHHHH
Q 042445          218 RITFAV---EPSALENGLG  233 (246)
Q Consensus       218 Rls~~~---~~~~l~~~~~  233 (246)
                      |+++..   +.++++..++
T Consensus       499 R~~~~np~tt~~~i~~~l~  517 (522)
T TIGR03799       499 RVVLANPLTTHEILQDILD  517 (522)
T ss_pred             EEEecCCCCCHHHHHHHHH
Confidence            999984   6777776554

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>PRK12462 phosphoserine aminotransferase; Provisional

Probab=98.38  E-value=2.6e-05  Score=65.60  Aligned_cols=187  Identities=14%  Similarity=0.100  Sum_probs=117.7

Q ss_pred             CCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCC
Q 042445           19 HVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNG   98 (246)
Q Consensus        19 PtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~   98 (246)
                      .||+.++        ++.+.++.++|+|-+=+.+.   .+. .+..+     -++..+.-|.+|.||  ++.++.++   
T Consensus       155 stGv~~~--------~~~~~~~~llvvD~sS~~~s---~pi-d~~~~-----dvi~agsQKnlgP~G--ltvvivs~---  212 (364)
T PRK12462        155 VEGLQFP--------DAAGLPDSPLIADMSSDFMS---RPF-DVEAY-----GMVYAHAQKNLGPAG--VTVAIIRR---  212 (364)
T ss_pred             CceEecC--------cccccCCCeEEEEcCchhhC---CCC-ChHHc-----cEEEeeccccCCCCc--eEEEEECH---
Confidence            7788775        22233689999997644322   222 22222     277778899999888  56677766   


Q ss_pred             CcchhhHHHHHHHH------------h-hhcCCCCchHHHHHHHHHhhchHH--HHHHHHHHHHHHHHHHHHHhhcCCCC
Q 042445           99 ILQDSGIVDSIKIF------------L-NISSDPATFIQGAVPQILEKTEEE--FFSKIIDILRETADKCCDRLKEIPCI  163 (246)
Q Consensus        99 ~~~~~~~~~~l~~~------------~-~~~~~~~~~~q~~~~~~l~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~~~~  163 (246)
                           +.+++....            . ....+++....+++...|+...++  -++.+.++.+++++.+++.+++.+++
T Consensus       213 -----~al~~~~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~id~~~~~  287 (364)
T PRK12462        213 -----ALLERVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYATLDALNEV  287 (364)
T ss_pred             -----HHHhhccccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence                 555443321            0 122256667777777777654445  68888899999999999999987654


Q ss_pred             cc-ccCC--CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHH
Q 042445          164 TC-PKKP--EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAF  238 (246)
Q Consensus       164 ~~-~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~  238 (246)
                      -. .+.+  .+-+-+.+++.+..      ..+.+.+.++++|+.-.-|..  .-+.+|.|+-.  +.+.++.+++-++++
T Consensus       288 ~~~~~~~~~RS~mnv~f~~~~~~------l~~~f~~~a~~~gl~~lkGhr--~vgg~Ras~yna~~~e~v~~L~~fm~~f  359 (364)
T PRK12462        288 IDCHAHRAARSTMNVAFRFRQPR------LDTLFKEQSTEAGFCGLSGHR--SIGGIRASLYNAVSEQAVSRLCAFLKDF  359 (364)
T ss_pred             ccCCCChhhcCcceEEEEcCCHH------HHHHHHHHHHHCCCccccCCc--ccCceEEEcCCCCCHHHHHHHHHHHHHH
Confidence            32 1222  34566666666543      334445568899998776654  26789999875  766555555555554


Q ss_pred             HH
Q 042445          239 YD  240 (246)
Q Consensus       239 ~~  240 (246)
                      -+
T Consensus       360 ~~  361 (364)
T PRK12462        360 AI  361 (364)
T ss_pred             HH
Confidence            33

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=98.38  E-value=0.00011  Score=68.61  Aligned_cols=219  Identities=12%  Similarity=-0.005  Sum_probs=123.3

Q ss_pred             hhhhhhhcc---c----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEE
Q 042445            2 ELINQDITR---E----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTL   74 (246)
Q Consensus         2 e~~~~~~~~---~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~   74 (246)
                      |.+++.+.+   +    ++++||| +|.+-+  .+++|+++|+++|.++++|-++......   ...   .+..+--+++
T Consensus       616 e~L~~~i~~~~~~taaV~iT~pst-~G~~e~--~I~eI~~iah~~G~~v~VDgAq~~al~~---l~~---Pg~~GaDi~~  686 (939)
T TIGR00461       616 VDLKNKAEQHGDELAAVMVTYPST-HGVFEP--TIQHACDIVHSFGGQVYLDGANMNAQVG---LTS---PGDLGADVCH  686 (939)
T ss_pred             HHHHHHHhhcCCceEEEEEEeCCc-Cceecc--cHHHHHHHHHHcCCEEEEEecChhhCCC---CCC---ccccCCCEEE
Confidence            456666653   2    7889977 788743  3899999999999999999988642111   111   1112223778


Q ss_pred             cccccccc----cCCceEEEEEeeCCCCCcchhhHHHHHHHH------------h--hhcC---CCCchHHHHHHHHHhh
Q 042445           75 GSISKRGI----VPGLRLGWLVTSDPNGILQDSGIVDSIKIF------------L--NISS---DPATFIQGAVPQILEK  133 (246)
Q Consensus        75 ~s~sK~~~----~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~------------~--~~~~---~~~~~~q~~~~~~l~~  133 (246)
                      +|..|.|+    ..|=-+|++.+.+        ++...+...            .  ...+   ..+......+..++..
T Consensus       687 ~s~HKtf~~P~G~GGPg~G~i~vr~--------~L~~~lPg~~v~~t~d~~greq~Iga~s~~~~g~a~~~l~a~~yi~~  758 (939)
T TIGR00461       687 LNLHKTFCIPHGGGGPGMGPIGVKS--------HLIPFLPKHDVVSMITGIGGSKSIGSVSAAPYGSASILPISWMYIKM  758 (939)
T ss_pred             ecCCccCCCCCCCCCCCeEEEEEhh--------hchhhcCCCcccccccCCCCccccccccccccCcHHHHHHHHHHHHH
Confidence            88888554    2334478888876        333222210            0  0010   1111222333444443


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCC-Cce-E--EEEEecccc-ccCCCChHHHHHHHHHhcCeEEecC
Q 042445          134 TEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPE-GSM-F--VMVKLNYSL-LEGINSDMEFALKLAKEESVIVLPG  208 (246)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~g~-~--~~~~~~~~~-~~~~~~~~~~~~~ll~~~gi~v~pg  208 (246)
                      ...+-+.+..+.--.+++++.+.|++.  +. ...+. .+. +  +.++++... --+.  ....+.+.|.++|+...- 
T Consensus       759 lG~~GL~~~a~~ailnAnYl~~rL~~~--~~-~l~~~~~~~~~hEfv~~~~~~~~~~g~--~~~dIakrL~d~G~hapt-  832 (939)
T TIGR00461       759 MGNEGLPKASVVAILNANYMATRLKDH--YP-ILFVGTLKHVAHECILDLRPLKAKTGI--EAIDVAKRLQDYGFHAPT-  832 (939)
T ss_pred             HCHHHHHHHHHHHHHHHHHHHHHhhcc--Cc-ccccCCCCceeEEEEEeccchhhhcCC--CHHHHHHHHHhCCeeccc-
Confidence            345667788887888999999999873  23 22221 222 2  223343210 0011  345556677799986332 


Q ss_pred             CCcCCCCeEEEEee--cChHHHHHHHHHHHHHHHHHh
Q 042445          209 ITVGLKDWLRITFA--VEPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       209 ~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~~~~~  243 (246)
                      ..|...+.+-+.++  .+.+++++.++.+.+.-++..
T Consensus       833 ~~~pv~g~lmiepTE~eskeelD~f~~al~~I~~e~~  869 (939)
T TIGR00461       833 LSFPVPGTLMVEPTESESLEELDRFCDAMIAIKEEIN  869 (939)
T ss_pred             cCCccCCeEEEEeeccCCHHHHHHHHHHHHHHHHHHH
Confidence            33444555545554  477888888888877665543

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type

Probab=98.34  E-value=6.7e-05  Score=63.60  Aligned_cols=199  Identities=14%  Similarity=0.056  Sum_probs=117.8

Q ss_pred             CCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCC
Q 042445           18 FHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPN   97 (246)
Q Consensus        18 NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~   97 (246)
                      ..||+..+.   +++...+  +++++|+|-+=+..   +.++ .+..     --+++.|.-|.+++|+ -+|+++.++  
T Consensus       138 TSTGv~npv---~~i~~~~--~~~lliVDavSs~g---~~~l-~~d~-----iDv~~tgsQK~L~~pp-Gls~v~vs~--  200 (374)
T TIGR01365       138 TTSGVRVPN---GDFIPAD--REGLTICDATSAAF---AQDL-DYHK-----LDVVTFSWQKVLGGEG-AHGMLILSP--  200 (374)
T ss_pred             Cchheeccc---ccccccc--CCCcEEEEccchhc---CCCC-ChhH-----CcEEEEechhccCCCC-ceEEEEECH--
Confidence            488888874   3333211  48999999764432   2222 2221     2377888999999855 366777777  


Q ss_pred             CCcchhhHHHHHHHH----------------------h-hhcC-CCCchHHHHHHHHHhhchHH-HHHHHHHHHHHHHHH
Q 042445           98 GILQDSGIVDSIKIF----------------------L-NISS-DPATFIQGAVPQILEKTEEE-FFSKIIDILRETADK  152 (246)
Q Consensus        98 ~~~~~~~~~~~l~~~----------------------~-~~~~-~~~~~~q~~~~~~l~~~~~~-~~~~~~~~~~~~~~~  152 (246)
                            +.+++....                      . ..+. .++....+++..++....+. -++.+.++.+++++.
T Consensus       201 ------~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~  274 (374)
T TIGR01365       201 ------RAVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDALKWAESIGGLKPLIARADDNLAV  274 (374)
T ss_pred             ------HHHHHHhhcCCCCCChhhhccccccchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence                  666554421                      0 1111 22333334444444321122 488889999999999


Q ss_pred             HHHHhhcCCCCccccC-C--CCceEEEEEeccccccCCCCh-----HHHHHHHHHhcCeEEecCCCcCCCCeEEEEee-c
Q 042445          153 CCDRLKEIPCITCPKK-P--EGSMFVMVKLNYSLLEGINSD-----MEFALKLAKEESVIVLPGITVGLKDWLRITFA-V  223 (246)
Q Consensus       153 l~~~L~~~~~~~~~~~-~--~~g~~~~~~~~~~~~~~~~~~-----~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~-~  223 (246)
                      +++.+++++.+..+.. +  .+.....+.++.+.+.....+     .+.+...++++||.+.+|.+-..+..+|++-. .
T Consensus       275 l~~~l~~lg~l~~~~~~~~~rS~tvt~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~i~~G~~~~~~~~fRIg~~G~  354 (374)
T TIGR01365       275 LEAFVAKNNWIHFLAETPEIRSNTSVCLKVVDPAIDALDEDAQADFAKELISTLEKEGVAYDIGSYRDAPSGLRIWCGAT  354 (374)
T ss_pred             HHHHHHHCCCcccCCCChhhcCCCeEEEEeCCccccccccchhhHHHHHHHHHHHHCCEEEeccccccCCCceEEecCCc
Confidence            9999999853543321 1  223333344543211000002     35567788899999998876544689999855 3


Q ss_pred             -ChHHHHHHHHHHHHHH
Q 042445          224 -EPSALENGLGRMKAFY  239 (246)
Q Consensus       224 -~~~~l~~~~~~l~~~~  239 (246)
                       +.++++.+++.|.=+.
T Consensus       355 i~~~di~~l~~~l~~~~  371 (374)
T TIGR01365       355 VEKSDLECLCPWLDWAF  371 (374)
T ss_pred             CCHHHHHHHHHHHHHHH
Confidence             8999999888876544

This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.

>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]

Probab=98.32  E-value=7.7e-05  Score=59.00  Aligned_cols=205  Identities=14%  Similarity=0.105  Sum_probs=123.1

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      ++++|..--|..   .+.+++.++|+++++.++..-+|.-..    .+.+....+.+   ++++|=.|.+ ++..++|.+
T Consensus       161 llTh~Dg~YGNl---~Dakkva~ic~e~gvPlllN~AYt~Gr----mpvs~ke~g~D---FiVgSGHKsm-AAs~PiGvl  229 (382)
T COG1103         161 LLTHVDGEYGNL---ADAKKVAKICREYGVPLLLNCAYTVGR----MPVSGKEIGAD---FIVGSGHKSM-AASAPIGVL  229 (382)
T ss_pred             EEeccCCCcCCc---hhhHHHHHHHHHcCCceEeecceeecc----ccccccccCCC---EEEecCccch-hccCCeeEE
Confidence            677665555555   458999999999999999999998533    33444444433   8899999996 556699999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhhh--------cCCCCchHHHHHHHHHhh-ch-HHHHHHHHHHHHHHHHHHHHHhhcCC
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLNI--------SSDPATFIQGAVPQILEK-TE-EEFFSKIIDILRETADKCCDRLKEIP  161 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~~~q~~~~~~l~~-~~-~~~~~~~~~~~~~~~~~l~~~L~~~~  161 (246)
                      ..+.        +..+...+...-        -.+.+.-+. .+..++.+ +. .+...++.+ --++.+.+.+.|++++
T Consensus       230 ~~~e--------E~ae~V~r~Sg~~~~~KEvellGCT~rGa-pivTlmASfP~V~eRVkrWde-Ev~kaR~fv~elEkig  299 (382)
T COG1103         230 AMSE--------EWAEIVLRRSGRAFPKKEVELLGCTVRGA-PIVTLMASFPHVVERVKRWDE-EVEKARWFVAELEKIG  299 (382)
T ss_pred             eehh--------HHHHHHHhhcccccccceeeeecccccCc-hHHHHHhcCHHHHHHHHHHHH-HHHHHHHHHHHHHHhh
Confidence            9988        777766543210        001111111 11222221 11 122222222 2356677888888887


Q ss_pred             CCccc-cCCCCceEEEEEeccccccCC----CChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee-cChHHHHHHHHHH
Q 042445          162 CITCP-KKPEGSMFVMVKLNYSLLEGI----NSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA-VEPSALENGLGRM  235 (246)
Q Consensus       162 ~~~~~-~~~~~g~~~~~~~~~~~~~~~----~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~-~~~~~l~~~~~~l  235 (246)
                      |+... ..|..--.  +.|..+.+..+    +..--++++-|+++||.-   ...+.+.++.+|+- .+.|+++..++.+
T Consensus       300 g~~qlG~rPk~HdL--m~Fetp~f~eIakk~~r~gyFlY~ELK~RgI~G---I~~G~Tk~~K~svyGl~~Eqve~V~~af  374 (382)
T COG1103         300 GVKQLGERPKNHDL--MKFETPVFHEIAKKHKRKGYFLYEELKKRGIHG---IQPGQTKYFKLSVYGLSWEQVEYVVDAF  374 (382)
T ss_pred             hHHHhCCCCcccce--eeecCchHHHHHHhCcCCceeeHHHHHhcCccc---cccCceeEEEEEeecCCHHHHHHHHHHH
Confidence            76642 23332222  22433222111    011225677788888753   22233789999966 5999999999999


Q ss_pred             HHHHHHH
Q 042445          236 KAFYDRH  242 (246)
Q Consensus       236 ~~~~~~~  242 (246)
                      ++.++++
T Consensus       375 keI~eky  381 (382)
T COG1103         375 KEIAEKY  381 (382)
T ss_pred             HHHHHhc
Confidence            9988764

>PLN03032 serine decarboxylase; Provisional

Probab=98.28  E-value=8.2e-05  Score=63.10  Aligned_cols=201  Identities=12%  Similarity=0.027  Sum_probs=114.0

Q ss_pred             hhhhhhhcc---c----cccCCcCCCccCCChhhHHHHHHHHHHcC-----CEEEEccccCCcccCCCCCccccccCCcc
Q 042445            2 ELINQDITR---E----FSDFQVFHVGSGFSGSFVSPIAETAKKLG-----IMVIANEVYGHLAFGNTPFVSMGVFGSIV   69 (246)
Q Consensus         2 e~~~~~~~~---~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~-----~~ii~De~y~~~~~~~~~~~~~~~~~~~~   69 (246)
                      +.+++.+.+   +    +.+..+|+||.+-+   +++|.++|+++|     +++.+|-+|+++...=....+...+... 
T Consensus       149 ~~L~~~i~~~~~~~~lvv~tagtt~tG~idp---i~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~~~~-  224 (374)
T PLN03032        149 DDLERALAKNRDKPAILNVNIGTTVKGAVDD---LDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTFRKP-  224 (374)
T ss_pred             HHHHHHHHHcCCCCEEEEEEecCcCCccCCC---HHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCCCcccCCCcC-
Confidence            445555544   1    56668899999966   888889999996     5899999998654220000000011111 


Q ss_pred             cEEEEcccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh------hcCCCCc--hHHHHHHHHHhhchHHHHHH
Q 042445           70 PLLTLGSISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN------ISSDPAT--FIQGAVPQILEKTEEEFFSK  141 (246)
Q Consensus        70 ~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~--~~q~~~~~~l~~~~~~~~~~  141 (246)
                      ---+.-|..|.+++| ..+|.++..+        ..++.+....+      .+...|.  .....+...|.....+-+.+
T Consensus       225 vDSis~s~HK~~g~P-~g~G~ll~r~--------~~~~~~~~~~~Yl~~~d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~  295 (374)
T PLN03032        225 IGSVSVSGHKFLGCP-MPCGVALTRK--------KHVKALSQNVEYLNSRDATIMGSRNGHAPLYLWYTLRRKGYRGIKR  295 (374)
T ss_pred             CcEEEECcccccCCC-cCeEEEEEEc--------hhhHhhccCCcccCCCCCcccCCCchHHHHHHHHHHHHhCHHHHHH
Confidence            123455688996533 5588999887        55554432211      1122232  23333334444333556677


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEe
Q 042445          142 IIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITF  221 (246)
Q Consensus       142 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~  221 (246)
                      ..+..-+..+.+.+.|++. ++..+..|.. +.+.  |..+.      +..    +.  +|..+.+     .++.+|+++
T Consensus       296 ~~~~~~~~a~~l~~~l~~~-~~~~~~~p~~-~~V~--f~~~~------~~~----~~--~~w~l~~-----~~~~~hi~v  354 (374)
T PLN03032        296 DVQHCMRNAHYLKDRLTEA-GLTCRLNELS-STVV--FERPM------DEA----FI--KKWQLAC-----EGDIAHVVV  354 (374)
T ss_pred             HHHHHHHHHHHHHHHHHhC-CCcEEECCCc-eEEE--EcCCC------cHh----Hh--heeeecc-----cCCEEEEEE
Confidence            7777788888999999886 5554556653 3333  43321      111    11  2333332     135889998


Q ss_pred             ec--ChHHHHHHHHHHH
Q 042445          222 AV--EPSALENGLGRMK  236 (246)
Q Consensus       222 ~~--~~~~l~~~~~~l~  236 (246)
                      ..  +.+.+++.++.|.
T Consensus       355 m~~~~~~~id~fi~dl~  371 (374)
T PLN03032        355 MPNVTVEKLDEFVEELV  371 (374)
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            85  5566666666554

>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=98.22  E-value=0.00019  Score=59.09  Aligned_cols=197  Identities=13%  Similarity=0.042  Sum_probs=126.6

Q ss_pred             hHHHHHHHHHHcCCEEEEccccC-CcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCC----------
Q 042445           28 FVSPIAETAKKLGIMVIANEVYG-HLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDP----------   96 (246)
Q Consensus        28 ~~~~l~~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~----------   96 (246)
                      +..++.++|.+.|+++++|-+|- +++..+--+.+....     -|+..+..|.+-  |=|-|.|.-...          
T Consensus       205 DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFey~-----DiVTTTTHKsLR--GPRg~mIFyRkGvk~~~~k~g~  277 (477)
T KOG2467|consen  205 DYARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFEYC-----DIVTTTTHKSLR--GPRGAMIFYRKGVKSIKPKQGK  277 (477)
T ss_pred             cHHHHHHHHHhcCceeehhhhhHHHHHhcccCCCccccc-----ceeecccccccc--CCcceeEEEeccCCcCCCCCCC
Confidence            57788889999999999999987 344333222222211     277788889854  445555543321          


Q ss_pred             CCCcchhhHHHHHHHHhh--hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceE
Q 042445           97 NGILQDSGIVDSIKIFLN--ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMF  174 (246)
Q Consensus        97 ~~~~~~~~~~~~l~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~  174 (246)
                      +..+   ++-+++...-.  ...++.--...+++.+|.........+-.++..+|.+.+.+.|.+. |.+.+........
T Consensus       278 ~i~y---dlE~kINfaVFP~lQGGPHNhtIaalAvALkQa~tpefk~Yq~qV~~Nakala~~l~~~-Gy~lvtgGTDnHl  353 (477)
T KOG2467|consen  278 EILY---DLEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKEYQKQVLKNAKALASALISR-GYKLVTGGTDNHL  353 (477)
T ss_pred             ccee---chhhhhhhhccccccCCCCcchHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHc-CceEecCCccceE
Confidence            1122   56666665522  3335655666677777776555556677777888999999999887 5654444445677


Q ss_pred             EEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC-----CCeEEEEeec------ChHHHHHHHHHHHHHHH
Q 042445          175 VMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-----KDWLRITFAV------EPSALENGLGRMKAFYD  240 (246)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-----~~~iRls~~~------~~~~l~~~~~~l~~~~~  240 (246)
                      +.+++....+     +-..+...|..-+|.+.--..++.     ++.||+.-..      -++++++..+-|.++++
T Consensus       354 vLvDLr~~G~-----dGarvE~vle~~~I~~NKNtvpGD~Sal~PgGiRiGtPAmTsRG~~e~df~~v~~fi~~av~  425 (477)
T KOG2467|consen  354 VLVDLRPKGV-----DGARVEKVLELCHIALNKNTVPGDKSALSPGGIRIGTPAMTSRGFGEEDFEKVADFIDRAVK  425 (477)
T ss_pred             EEEeccccCC-----chHHHHHHHHHhhhhhcCCcCCCCccccCCCceeccchhhcccCccHHHHHHHHHHHHHHHH
Confidence            7777776543     555566777777777654333332     8999996431      57788888887777654

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=98.20  E-value=0.00016  Score=68.04  Aligned_cols=189  Identities=14%  Similarity=0.127  Sum_probs=109.7

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccccccc-----ccCCc
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRG-----IVPGL   86 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-----~~~g~   86 (246)
                      +..+| |.+|.+.+   +++|.++|+++|+++++ -+... ...  ...+...++.   -|++++--|..     |+|. 
T Consensus       239 lvq~P-~~~G~v~d---v~~I~~~ah~~GaL~iV-aad~l-al~--~l~~pge~GA---Di~vgsgqKwg~P~G~GGP~-  306 (993)
T PLN02414        239 LVQYP-ATDGEVLD---YAEFVKNAHANGVKVVM-ATDLL-ALT--MLKPPGEWGA---DIVVGSAQRFGVPMGYGGPH-  306 (993)
T ss_pred             EEecC-CCCeEEcC---HHHHHHHHHHcCCEEEE-EECHH-Hhc--CCCCHhhccC---cEEEECCCccccCCCCCCCC-
Confidence            45566 77999965   89999999999999998 33221 111  1111222222   26677766664     3343 


Q ss_pred             eEEEEEeeCCCCCcchhhHHHHHHH-Hhh-----------------------h-cCCCCchHHHHHHHHHh-----hchH
Q 042445           87 RLGWLVTSDPNGILQDSGIVDSIKI-FLN-----------------------I-SSDPATFIQGAVPQILE-----KTEE  136 (246)
Q Consensus        87 r~G~i~~~~~~~~~~~~~~~~~l~~-~~~-----------------------~-~~~~~~~~q~~~~~~l~-----~~~~  136 (246)
                       .|++.+.+        ++.+.+.. ..+                       . ....|.-+..++.+.+.     ....
T Consensus       307 -aGflavr~--------~~~r~~PgriVG~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~~~g~  377 (993)
T PLN02414        307 -AAFLATSQ--------EYKRLMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGP  377 (993)
T ss_pred             -eeEEEECH--------HHHhhCCCcccCcccCCCCCcccccccccccchhhhcccccchhHHHHHHHHHHHHHHHHhcc
Confidence             88888877        44332220 000                       0 00112212222222222     1112


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCe
Q 042445          137 EFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDW  216 (246)
Q Consensus       137 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~  216 (246)
                      .-+++.+++..++...+.+.|+.. |+.. ..+  .+|-.+.+...      +. +.+.+.|.++||.+....    ++.
T Consensus       378 ~Gl~~Ia~ri~~la~~l~~~L~~~-G~~~-~~~--~~f~~vt~~~~------~~-~~v~~~L~~~gI~l~~~~----~~~  442 (993)
T PLN02414        378 EGLKTIAQRVHGLAGVFAAGLKKL-GFQV-QSL--PFFDTVKVKCS------DA-DAIADAAAKVGINLRVVD----ANT  442 (993)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhhc-CCcc-CCC--CCcCeEEEecC------CH-HHHHHHHHHCCCeeEEec----CCe
Confidence            347777888888899999999775 5653 222  23333333322      24 445667788999776432    567


Q ss_pred             EEEEeec--ChHHHHHHHHHHH
Q 042445          217 LRITFAV--EPSALENGLGRMK  236 (246)
Q Consensus       217 iRls~~~--~~~~l~~~~~~l~  236 (246)
                      +|+|+..  ++++++.+++.|.
T Consensus       443 lrvs~~e~~T~edId~L~~~l~  464 (993)
T PLN02414        443 VTVSFDETTTLEDVDKLFKVFA  464 (993)
T ss_pred             EEEEeeccCCHHHHHHHHHHHc
Confidence            9999995  8889999999885

>PRK15400 lysine decarboxylase CadA; Provisional

Probab=98.17  E-value=0.0002  Score=65.08  Aligned_cols=73  Identities=10%  Similarity=-0.029  Sum_probs=49.6

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcc-cCCC--CCccccccC-CcccEEEEcccccccccCCce
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLA-FGNT--PFVSMGVFG-SIVPLLTLGSISKRGIVPGLR   87 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~-~~~~--~~~~~~~~~-~~~~~i~~~s~sK~~~~~g~r   87 (246)
                      ++++| +--|.+++   ++.|.+.|..++  |++||+|..+. |.+.  +..++.... +.+.++++.|..|.  ++++.
T Consensus       302 vit~p-TYdG~~yd---~~~I~~~~~~~~--ilvDEAwgah~~F~p~~~~~sam~~ga~~~~~i~vtQStHKt--L~alT  373 (714)
T PRK15400        302 VITNS-TYDGLLYN---TDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKL--LAAFS  373 (714)
T ss_pred             EEECC-CCccEecC---HHHHHHHhCCCC--EEEEccchhhhccCcccCCcChhhcCCCCCCceEEEEchhhc--ccchh
Confidence            88899 89999988   677777777766  78999998653 4431  122332221 22457999999999  46666


Q ss_pred             EEEEE
Q 042445           88 LGWLV   92 (246)
Q Consensus        88 ~G~i~   92 (246)
                      .+.++
T Consensus       374 QaS~L  378 (714)
T PRK15400        374 QASMI  378 (714)
T ss_pred             HHhHH
Confidence            66544

>COG3844 Kynureninase [Amino acid transport and metabolism]

Probab=98.15  E-value=0.00027  Score=57.46  Aligned_cols=207  Identities=13%  Similarity=0.059  Sum_probs=126.1

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccccccccc-CCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIV-PGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-~g~r~G~   90 (246)
                      ++++-|.-||+.++   +.+|-+++.+++++++.|-+|+.....-    .   +...+--+-|++.-|.+++ ||..-|-
T Consensus       171 ~L~~V~y~TGql~d---m~aiT~~AH~~galv~wDLAHsaGavp~----~---Lh~~gaDfaigcsyKYLNgGPGapa~l  240 (407)
T COG3844         171 LLSHVNYKTGQLLD---MRAITALAHQHGALVGWDLAHSAGAVPV----D---LHAAGADFAIGCSYKYLNGGPGAPAGL  240 (407)
T ss_pred             Eeccccccccceee---HHHHHHHHHhcCceEEeehhcccCCcce----e---ecccCCCeeeeeeceeccCCCCCceeE
Confidence            77888789999988   8889999999999999999998654331    1   1122223667777787764 7766555


Q ss_pred             EEeeCCCCCcchh------------hHHHHHHH---Hhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 042445           91 LVTSDPNGILQDS------------GIVDSIKI---FLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCC  154 (246)
Q Consensus        91 i~~~~~~~~~~~~------------~~~~~l~~---~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~  154 (246)
                      -+.+++-+..- +            .+......   ... ..++++.++..++...|.--.+-.+.++|++--.....+.
T Consensus       241 ~v~~~h~e~~~-~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDifa~~~i~~lR~kSlaLTd~fi  319 (407)
T COG3844         241 FVAPRHRERSW-PPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFADVDITELRKKSLALTDYFI  319 (407)
T ss_pred             Eeccccccccc-cccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhhhhhhhhcCHHHHHHhhhHHHHHHH
Confidence            55544211100 0            00000000   001 1224444555555555553334447777776666677777


Q ss_pred             HHhhc-CC--CCccccCCC----CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec---C
Q 042445          155 DRLKE-IP--CITCPKKPE----GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV---E  224 (246)
Q Consensus       155 ~~L~~-~~--~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~---~  224 (246)
                      +.++. .+  ++. ...|.    -|--+.+..+         ....+.+.|.++||+.    .|..++-+||.++.   +
T Consensus       320 eLvEa~~~~~~l~-l~tPr~~~~rGsqvS~~hp---------~~~~V~qaLi~rGVig----D~R~P~vlRfgftPlY~~  385 (407)
T COG3844         320 ELVEARCEYYGLT-LVTPRAHEERGSQVSLYHP---------HGYQVMQALIDRGVIG----DFREPDVLRFGFTPLYVS  385 (407)
T ss_pred             HHHHhccccCCcE-EeccchhhhccceeeEecC---------cHHHHHHHHHHcCccc----cccCCCeeeecCccceec
Confidence            77765 22  333 23332    1333443343         4456677888999963    34458999999994   7


Q ss_pred             hHHHHHHHHHHHHHHHHHh
Q 042445          225 PSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       225 ~~~l~~~~~~l~~~~~~~~  243 (246)
                      -+++=.+++.|.+.+++.+
T Consensus       386 ~~DVw~AV~~L~evL~t~a  404 (407)
T COG3844         386 FVDVWDAVDALEEVLDTLA  404 (407)
T ss_pred             hhHHHHHHHHHHHHHHhhc
Confidence            7889999999999988754

>PRK15399 lysine decarboxylase LdcC; Provisional

Probab=98.12  E-value=0.0011  Score=60.44  Aligned_cols=75  Identities=11%  Similarity=-0.040  Sum_probs=48.2

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEE-EEccccCCcc-cCCC--CCcccccc-CCcccEEEEcccccccccCCc
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMV-IANEVYGHLA-FGNT--PFVSMGVF-GSIVPLLTLGSISKRGIVPGL   86 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~i-i~De~y~~~~-~~~~--~~~~~~~~-~~~~~~i~~~s~sK~~~~~g~   86 (246)
                      ++++| +.-|.+++   ++.|.+.|   |+.+ ++||+|..+. |.+.  +..++... +.+..++.+.|..|.  ++++
T Consensus       302 vit~p-TYdGi~yd---~~~I~~~~---g~~~ilvDEAhgah~~F~p~~~~~sam~~~~~aD~~i~~tQStHKt--L~al  372 (713)
T PRK15399        302 VITNS-TYDGLLYN---TDWIKQTL---DVPSIHFDSAWVPYTHFHPIYQGKSGMSGERVPGKVIFETQSTHKM--LAAF  372 (713)
T ss_pred             EEECC-CCCceeeC---HHHHHHHh---CCCEEEEeccchhhhhcCcccCCcChhhCCCCCCeeeeeeeehhcc--cccc
Confidence            88999 99999998   55566655   5655 6999998554 4331  12223222 123345779999999  5676


Q ss_pred             eEEEEEeeC
Q 042445           87 RLGWLVTSD   95 (246)
Q Consensus        87 r~G~i~~~~   95 (246)
                      ..+.++--+
T Consensus       373 TQaS~iHvk  381 (713)
T PRK15399        373 SQASLIHIK  381 (713)
T ss_pred             chheeeeec
Confidence            667655433

>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

Probab=98.11  E-value=0.00013  Score=63.53  Aligned_cols=156  Identities=15%  Similarity=0.082  Sum_probs=93.2

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccC--CCCCccccccCCcccEEEEcccccccccCCceEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFG--NTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLG   89 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~--~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G   89 (246)
                      +.+-.+.|||.+   +++++|.++|+++++++.+|-+|+++...  .... . ..+.-..-.=+.-++.|. |..=..+|
T Consensus       212 V~~aGtT~~G~i---Ddi~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~-~-~~f~l~~vdSIt~d~HK~-g~aP~~~G  285 (460)
T COG0076         212 VGTAGTTDTGSI---DDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPDG-R-WDFGLEGVDSITVDGHKY-GLAPIGCG  285 (460)
T ss_pred             EEEecCCCCCcc---CCHHHHHHHHHHcCCcEEEEccccceeecccCccc-h-hhcCCCCceEEEECcccc-cCCCCCce
Confidence            345556678776   56999999999999999999999988742  2111 1 111111122344568899 55557799


Q ss_pred             EEEeeCCCCCcchhhHHHHHHHHhhh---------cCCCCchHHHHHH--HHHhhchHHHHHHHHHHHHHHHHHHHHHhh
Q 042445           90 WLVTSDPNGILQDSGIVDSIKIFLNI---------SSDPATFIQGAVP--QILEKTEEEFFSKIIDILRETADKCCDRLK  158 (246)
Q Consensus        90 ~i~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~~~q~~~~--~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~  158 (246)
                      |++..+.+      ++.+.+.....+         +...+..+-.++.  ..+.....+-+.++.++.-+.++.+.+.|+
T Consensus       286 ~il~rd~e------~l~~~~~~~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~  359 (460)
T COG0076         286 VVLFRDEE------ALRRILIFADYYLPGGGIPNFTILGSRPGRQALALYANLRRLGREGYRKLLDRTLELARYLAEELE  359 (460)
T ss_pred             EEEEECHH------HhhhhhhcccccCCCCCcCceeEeeccchHHHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999841      233333321111         1112222212222  222222245567777777789999999999


Q ss_pred             cCCCCccccCCCCceEEEEEec
Q 042445          159 EIPCITCPKKPEGSMFVMVKLN  180 (246)
Q Consensus       159 ~~~~~~~~~~~~~g~~~~~~~~  180 (246)
                      +.+.+..+..| ....+.++.+
T Consensus       360 ~~~~~e~~~~p-~l~~V~fr~~  380 (460)
T COG0076         360 KLGDFELVNEP-ELPIVAFRLK  380 (460)
T ss_pred             hCCCcEeecCC-ccceEEEEcC
Confidence            98767755555 3455555553

>PRK13578 ornithine decarboxylase; Provisional

Probab=98.02  E-value=0.00062  Score=61.98  Aligned_cols=75  Identities=7%  Similarity=0.080  Sum_probs=51.9

Q ss_pred             cccCCcCCCccCCChhhHHHHHHH-HHHcCCEEEEccccCCcc-cCCC--CCccc-cccCCc-ccEEEEcccccccccCC
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAET-AKKLGIMVIANEVYGHLA-FGNT--PFVSM-GVFGSI-VPLLTLGSISKRGIVPG   85 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~-~~~~~~~ii~De~y~~~~-~~~~--~~~~~-~~~~~~-~~~i~~~s~sK~~~~~g   85 (246)
                      ++++| +.-|++++   ++.|+++ ++.++ .|++||+|..+. |.+.  .+..+ ...+.+ ..++++.|..|.  +++
T Consensus       287 vit~p-TYdG~~yd---i~~I~~~~~h~~~-~llvDEAhgah~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKt--L~a  359 (720)
T PRK13578        287 VIQLG-TYDGTIYN---ARQVVDKIGHLCD-YILFDSAWVGYEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQ--QAG  359 (720)
T ss_pred             EEECC-CCcceeec---HHHHHHHhhccCC-cEEEeCcchhhhccCcccccCChhhhhcCCCCCCeEEEEChhhc--chh
Confidence            89999 99999988   7788887 57778 999999998554 4431  12222 122332 357999999999  466


Q ss_pred             ceEEEEEe
Q 042445           86 LRLGWLVT   93 (246)
Q Consensus        86 ~r~G~i~~   93 (246)
                      +..+.++-
T Consensus       360 lTQaS~LH  367 (720)
T PRK13578        360 FSQTSQIH  367 (720)
T ss_pred             hhhHhhhh
Confidence            66666553

>PLN02263 serine decarboxylase

Probab=98.02  E-value=0.0017  Score=56.48  Aligned_cols=196  Identities=12%  Similarity=-0.022  Sum_probs=114.9

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCC-----EEEEccccCCcccCC-CCCccccccCCcccEEEEcccccccccCC
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGI-----MVIANEVYGHLAFGN-TPFVSMGVFGSIVPLLTLGSISKRGIVPG   85 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~-----~ii~De~y~~~~~~~-~~~~~~~~~~~~~~~i~~~s~sK~~~~~g   85 (246)
                      +.+-.+-++|.+   +.+++|.++|+++|+     |+.+|-+|+++...- .....+. +.....-|. -+..|.+ ..-
T Consensus       233 vataGTT~~GAi---Dpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~~~~~d-f~~~vDSIs-vD~HK~l-~~P  306 (470)
T PLN02263        233 NVNIGTTVKGAV---DDLDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRAPKVT-FKKPIGSVS-VSGHKFV-GCP  306 (470)
T ss_pred             EEEecCCCCcCC---CCHHHHHHHHHHcCCccCCeeEEEeccchhhHhhhcccccccC-CCcCccEEE-ECCcccc-CCC
Confidence            445566788887   559999999999996     999999999876421 1111111 111112233 3467995 555


Q ss_pred             ceEEEEEeeCCCCCcchhhHHHHHHHHh------hhcCCCCchH--HHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh
Q 042445           86 LRLGWLVTSDPNGILQDSGIVDSIKIFL------NISSDPATFI--QGAVPQILEKTEEEFFSKIIDILRETADKCCDRL  157 (246)
Q Consensus        86 ~r~G~i~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~~~--q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L  157 (246)
                      ..+|.++..+        ..++.+....      +.+...+.-.  ...+...|.....+-+.+..+..-++++.+.+.|
T Consensus       307 ~~cgvll~R~--------~~~~~~~~~~~Yl~~~d~ti~gSR~g~~al~lW~~L~~~G~~G~~~~i~~~~~~A~~l~~~l  378 (470)
T PLN02263        307 MPCGVQITRM--------EHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQKCLRNAHYLKDRL  378 (470)
T ss_pred             cCEEEEEEeh--------hhHhhhccChHhhCCCCCCcCCCCCcHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence            7889999987        4443332211      1111222222  2333333443335567777777788889999999


Q ss_pred             hcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHH
Q 042445          158 KEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRM  235 (246)
Q Consensus       158 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l  235 (246)
                      ++. ++..+..|.... +.  |...      ++..      ..+|..+.+     .++.+++++..  +.+.+++.++.|
T Consensus       379 ~~~-g~~~~~~p~s~~-V~--f~~p------~~~~------~~~gW~L~~-----~~~~~Hivvmphv~~~~id~fi~DL  437 (470)
T PLN02263        379 REA-GISAMLNELSST-VV--FERP------KDEE------FVRRWQLAC-----QGNIAHVVVMPSVTIEKLDYFLKEL  437 (470)
T ss_pred             HhC-CCeEEeCCCceE-EE--EecC------chHH------hhcceEEcc-----CCCcEEEEEcCCCCHHHHHHHHHHH
Confidence            887 565556665333 33  3221      1111      124444433     14568998885  778899998888


Q ss_pred             HHHHHHH
Q 042445          236 KAFYDRH  242 (246)
Q Consensus       236 ~~~~~~~  242 (246)
                      .+..+..
T Consensus       438 ~~~~~~~  444 (470)
T PLN02263        438 VEKRSTW  444 (470)
T ss_pred             HHHHhhh
Confidence            8776643

>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]

Probab=97.99  E-value=0.00031  Score=57.81  Aligned_cols=209  Identities=17%  Similarity=0.147  Sum_probs=129.3

Q ss_pred             CCCccCCChhhHHHHHHHHHHcCCEEEEccccC-Cccc---C---CCCCccccccCC----cccEEEEcccccccccCCc
Q 042445           18 FHVGSGFSGSFVSPIAETAKKLGIMVIANEVYG-HLAF---G---NTPFVSMGVFGS----IVPLLTLGSISKRGIVPGL   86 (246)
Q Consensus        18 NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~-~~~~---~---~~~~~~~~~~~~----~~~~i~~~s~sK~~~~~g~   86 (246)
                      .-.|+..|.+.++++.++|++|++.++.|-+-. +-+|   .   +....++..+..    +..-+ .-|.-|- ++.. 
T Consensus       197 sagGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~sYaD~~-~mS~KKD-~lvn-  273 (471)
T COG3033         197 SAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFAENAYFIKQREPGYRDWSIEEIAREMYSYADGC-TMSAKKD-GLVN-  273 (471)
T ss_pred             ccCCCcchHHhHHHHHHHHHHcCCcEEeehhhhhhhhhhhhhcCcccccccHHHHHHHHHhhhhhh-eeecccc-ceec-
Confidence            467899999999999999999999999998522 1111   1   111122222111    11122 2345555 4422 


Q ss_pred             eE-EEEEeeCCCCCcchhhHHHHHHHH--h----hhcCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhh
Q 042445           87 RL-GWLVTSDPNGILQDSGIVDSIKIF--L----NISSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADKCCDRLK  158 (246)
Q Consensus        87 r~-G~i~~~~~~~~~~~~~~~~~l~~~--~----~~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~  158 (246)
                       + |++...+ +.++   ++...++..  .    +.+.+.+.=...+++.-|.+.- .+|+..+.++    .++|.+.|+
T Consensus       274 -mGGfl~~~D-~~~f---Dvy~~~~~~~V~~eG~~tYGgl~GrdmealAvGL~e~~~~~yl~~Rv~Q----v~YL~~~l~  344 (471)
T COG3033         274 -MGGFLCFKD-DSFF---DVYEECRTLVVVQEGFPTYGGLAGRDMEALAVGLREGVNFDYLAHRVAQ----VQYLADGLE  344 (471)
T ss_pred             -cccEEEecC-ccHH---HHHHHHHhheEeeccccccCcccchhHHHHHHHHHHhcCcHHHHHHHHH----HHHHHHHHH
Confidence             3 4555555 3333   455555432  1    1222566666677777776543 4777776665    456777887


Q ss_pred             cCCCCccccCCCCceEEEEEeccccccCCC----ChHHHHHHHHHhcCeEEecCCCcCC-------------CCeEEEEe
Q 042445          159 EIPCITCPKKPEGSMFVMVKLNYSLLEGIN----SDMEFALKLAKEESVIVLPGITVGL-------------KDWLRITF  221 (246)
Q Consensus       159 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----~~~~~~~~ll~~~gi~v~pg~~f~~-------------~~~iRls~  221 (246)
                      +. |+. +..|-||.-++++...- ++.++    ....++.++-++.||-...-..|..             -+-+|+++
T Consensus       345 ~~-GVp-i~~paGGHavfvda~~~-lphip~eqFpaqala~ely~e~GiRavElG~~~~~rd~ktg~q~~~~~elvRlti  421 (471)
T COG3033         345 EA-GVP-IVQPAGGHAVFVDAGKF-LPHIPAEQFPAQALACELYKEAGIRAVELGSFSLGRDPKTGKQHPPPAELVRLTI  421 (471)
T ss_pred             hc-CCe-eEecCCCceEEeehhhh-cCCCChhhCcHHHHHHHHHHHhCeeeeeeeceecccCCCccccCCCchheeeEec
Confidence            77 776 67899999999764321 11111    2456778888999998876444432             26799999


Q ss_pred             ec---ChHHHHHHHHHHHHHHHH
Q 042445          222 AV---EPSALENGLGRMKAFYDR  241 (246)
Q Consensus       222 ~~---~~~~l~~~~~~l~~~~~~  241 (246)
                      ..   +.+.++-.++.+++..++
T Consensus       422 pRrtYt~~HmD~V~~a~~~l~e~  444 (471)
T COG3033         422 PRRTYTQTHMDFVIEAFKALKEN  444 (471)
T ss_pred             cccccchhHHHHHHHHHHHHHhc
Confidence            83   888899999888887654

>KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism]

Probab=97.93  E-value=0.0016  Score=55.43  Aligned_cols=213  Identities=11%  Similarity=0.083  Sum_probs=118.3

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHH-cCCEEEEccccCCcccC-CCCCccccccCCcccEEEEccc-ccccccCCceE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKK-LGIMVIANEVYGHLAFG-NTPFVSMGVFGSIVPLLTLGSI-SKRGIVPGLRL   88 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~-~~~~ii~De~y~~~~~~-~~~~~~~~~~~~~~~~i~~~s~-sK~~~~~g~r~   88 (246)
                      +.+-|+.|+|.+   +++++|.++.-+ +++.+.+|-+-++|... +.....-..+... .+..+..- .|. |+.=-..
T Consensus       223 v~~~~~~p~G~~---e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~~~~~~fdFr~p-~V~Sisa~~HKY-Gl~~~G~  297 (491)
T KOG1383|consen  223 VGSLPNFPTGEI---EDVEKLADLLLEIWDIPIHVDACLGGFINPAGYLNEEEFDFRVP-GVTSISADGHKY-GLAPAGS  297 (491)
T ss_pred             EEEcCCCCccch---hhHHHHHHHHHHHhCCceeecccCccccccccccCccccccCCC-CceeEeecccee-eeeecCc
Confidence            677888899987   678999998888 99999999998888753 2111111122211 12222222 244 5544447


Q ss_pred             EEEEeeCCCCCcchhhHH---HHHHH-HhhhcCCCCchHHHHH---HHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 042445           89 GWLVTSDPNGILQDSGIV---DSIKI-FLNISSDPATFIQGAV---PQILEKTEEEFFSKIIDILRETADKCCDRLKEIP  161 (246)
Q Consensus        89 G~i~~~~~~~~~~~~~~~---~~l~~-~~~~~~~~~~~~q~~~---~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  161 (246)
                      ||++=.+.+-.-.  ++.   +.+-. +.+++.+.|..+...+   +++++-+.+-|. +..+...+....+.+.+++++
T Consensus       298 ~~vl~r~k~~~~~--q~~~~~~w~Gg~y~s~TlngSR~g~~va~~wa~~~~lG~eGY~-~~~~~ive~~~~l~egie~i~  374 (491)
T KOG1383|consen  298 SWVLYRNKELLPH--QLFFHTDWLGGIYASPTLNGSRPGSQVAAQWAALMSLGEEGYR-ENTQNIVETARKLREGIENIK  374 (491)
T ss_pred             EEEEEcccccccc--eEEEeccccCccccCcccccCCcccHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHhhhccc
Confidence            8887766421110  111   11111 1122333333322222   234443334444 445557889999999999988


Q ss_pred             CCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec---ChHHHHHHHHHHHHH
Q 042445          162 CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV---EPSALENGLGRMKAF  238 (246)
Q Consensus       162 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~---~~~~l~~~~~~l~~~  238 (246)
                      ++..+-.|.-++..   +....+     +.-.+..+|.+.|..+ |+.-|+  ..+.+++..   .++..++.+.-|+++
T Consensus       375 ~i~i~gkp~vs~~~---~~s~~~-----~i~elsd~l~~~GW~l-nalq~P--~a~Hi~vt~~~~~~~~A~~~v~Di~~~  443 (491)
T KOG1383|consen  375 GIKIVGKPLVSFIL---FGSNDV-----NIFELSDLLRKKGWIL-NALQFP--AAIHICVTRVHAREDVADRFVADIRKV  443 (491)
T ss_pred             cceecCCCcEEEEE---ccCCcc-----chhhhhHHHHhcCcCc-cccCCC--CceEEEEEeeeccHHHHHHHHHHHHHH
Confidence            88765554433322   332221     4556677888999854 444443  355555552   344456667777777


Q ss_pred             HHHHh
Q 042445          239 YDRHA  243 (246)
Q Consensus       239 ~~~~~  243 (246)
                      ++++.
T Consensus       444 ~~el~  448 (491)
T KOG1383|consen  444 VEELK  448 (491)
T ss_pred             HHHHH
Confidence            77665

>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]

Probab=97.69  E-value=0.0075  Score=53.16  Aligned_cols=207  Identities=13%  Similarity=0.065  Sum_probs=110.1

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      +++|| +--|+++.   .++|++.+.++++|+..|+++....... +..+-... ....++...|..|.  ++++..+.+
T Consensus       171 vitnp-TYdGv~~n---~~~i~~~~~~~~a~v~~deah~~~~~~~-~~l~~~~~-~~~~~~~tqS~HK~--l~alSQaS~  242 (557)
T COG1982         171 VITNP-TYDGVCYN---LRKIVELLHHYGAWVLYDEAHPAHFDFS-PMLPESAL-NGGADFVTQSTHKL--LAALSQASM  242 (557)
T ss_pred             EEecC-ccceEeec---HHHHHHHHhhcCceEEhhhcCccccccc-ccCcchhh-hcCceEEEechhhh--hhhhhhhHH
Confidence            88888 88899988   7788888899999999999877433111 11111111 12357999999999  455555655


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhh-------chHHHHHHHHHHHHHHHHHHHHHhhcCCCCc
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEK-------TEEEFFSKIIDILRETADKCCDRLKEIPCIT  164 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~-------~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~  164 (246)
                      +--.++..    -..+++..+.....+.||.  +.+.+.+..       ......++..+..-+.++.+.+..++++++.
T Consensus       243 iHv~~~~~----~~~~r~nea~~~h~STSPs--Y~l~ASlD~Ar~~~~~~G~~l~~~~~~~~i~~r~~~~~~~~~~~~~~  316 (557)
T COG1982         243 IHVKDGRA----VNHERFNEALMMHQSTSPS--YPLMASLDVARMQEGNAGRELWQEVIDEAIDFRKALRRLINEIGFFP  316 (557)
T ss_pred             HhhCCCcc----CCHHHHHHHHHHHccCCch--HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCee
Confidence            54442111    2245555553332233332  222223321       1112222223444556666666666666665


Q ss_pred             cccCCC----Cc----------eEE------EEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecC
Q 042445          165 CPKKPE----GS----------MFV------MVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVE  224 (246)
Q Consensus       165 ~~~~~~----~g----------~~~------~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~  224 (246)
                      .+.++.    .+          .++      .+..+.   .|+  ....+...|+++||...-..    +..+-+-+..-
T Consensus       317 ~~~~~~~~~~~~whgf~~~~~~~~~lDP~Klti~tp~---~Gi--pg~~v~~~L~e~gii~e~~~----d~~~lll~~~~  387 (557)
T COG1982         317 VLQPEKLDPPTGWHGFEDYADDQYFLDPTKLTITTPE---FGI--PGAIVAKYLREHGIIPEETG----DYSNLLLFSPG  387 (557)
T ss_pred             eccccccCCcccccccccccccceeccccEEEEecCC---CCC--cHHHHHHHHHHcCCeeeecC----CceeeEEeeec
Confidence            443332    11          111      111111   133  45566778888888765533    23333333332


Q ss_pred             hHHHHHHHHHHHHHHHH
Q 042445          225 PSALENGLGRMKAFYDR  241 (246)
Q Consensus       225 ~~~l~~~~~~l~~~~~~  241 (246)
                      ..+....++.|.++.+.
T Consensus       388 ~gk~~~lv~~L~~f~r~  404 (557)
T COG1982         388 IGKWQTLVDRLLEFKRR  404 (557)
T ss_pred             cchHHHHHHHHHHHHHh
Confidence            25566667777777663

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=97.67  E-value=0.0038  Score=58.56  Aligned_cols=89  Identities=12%  Similarity=0.006  Sum_probs=62.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCC
Q 042445          135 EEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLK  214 (246)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~  214 (246)
                      ...-++++.++...+...+.+.|++. |+.. ..+  .+|-.+.+....     .+.+.+.+.+.++||.+...    .+
T Consensus       336 G~~GL~~iA~~~~~~a~~l~~~L~~~-G~~~-~~~--~fF~~~~v~~~~-----~~~~~i~~~~~~~gi~l~~~----~~  402 (939)
T TIGR00461       336 GPKGLKNIARRIHSLTSILANGLEND-PHEL-INK--TWFDTLTVKVGN-----GISSELLKAAEEFNINLRAV----DT  402 (939)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhC-CCcc-cCC--CccceEEEEeCC-----CCHHHHHHHHHHCCCeeeec----CC
Confidence            46778888888899999999999885 7763 333  445444343220     13455566778899987652    25


Q ss_pred             CeEEEEeec--ChHHHHHHHHHHH
Q 042445          215 DWLRITFAV--EPSALENGLGRMK  236 (246)
Q Consensus       215 ~~iRls~~~--~~~~l~~~~~~l~  236 (246)
                      +.+++|+..  +.++++..++.+.
T Consensus       403 ~~i~~s~~E~~t~~di~~l~~~~~  426 (939)
T TIGR00461       403 TTVGIALDETTTKADVENLLKVFD  426 (939)
T ss_pred             CEEEEEeecCCCHHHHHHHHHHhc
Confidence            789999984  8888999888884

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=97.64  E-value=1.9e-05  Score=64.70  Aligned_cols=138  Identities=14%  Similarity=0.059  Sum_probs=72.5

Q ss_pred             cccCCcCCC-ccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHV-GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPt-G~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      ++++|+|-. |+++|.+++++|.++|++||+.++.|-+--.-.... ...++..+...-.++++ |++|..++++   |.
T Consensus       129 ~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a~~~-~~~~~~e~~~~~D~v~~-~~tK~~g~~~---Ga  203 (290)
T PF01212_consen  129 SLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGARLANAAAA-LGVSLAEIAAGADSVSF-GGTKNGGAPG---GA  203 (290)
T ss_dssp             EEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHHHCH-HHHHHHHHHTTSSEEEE-ETTSTT-SSS---EE
T ss_pred             EEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHhhhc-ccccHHHHhhhCCEEEE-EEEccccccc---ce
Confidence            788886653 999999999999999999999999998632111000 00112222222234444 5999988776   77


Q ss_pred             EEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHH-----HHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 042445           91 LVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAV-----PQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCI  163 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  163 (246)
                      +++.++       ++++..+.. +.....+....-.++     ...+.. .+.+ ......-.++.+.+.+.|+.+++.
T Consensus       204 vl~~~~-------~~i~~~~~~~k~~gg~~~~~G~~~a~~~~~~~~l~~-l~~~-~~~~~~~~~~A~~La~~l~~~~~~  273 (290)
T PF01212_consen  204 VLAGNK-------EFIAKARRQRKRLGGGMRQAGVLAAAELYQFAALRA-LELW-LERARHANAMAKRLAAGLEALGGV  273 (290)
T ss_dssp             EEEESH-------HHHHHHHHHHHHHTHHHHHTTHHHHHHHHHHHHHCH-EECS-HHHHHCHHHHHHCHHHCHHEECEE
T ss_pred             EEEech-------HHHHHHHHHHHHhccCeeecceeeeechhhHHHHHH-HHhh-HHHHHHHHHHHHHHHHHHHHCCCc
Confidence            666553       656554433 222211110001111     011110 1222 333444567788888888887543

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)

Probab=97.56  E-value=0.0088  Score=50.37  Aligned_cols=195  Identities=15%  Similarity=0.104  Sum_probs=100.2

Q ss_pred             hHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC---ccc-EEEEcccccccccCCceEEEEEeeCCCCCcchh
Q 042445           28 FVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS---IVP-LLTLGSISKRGIVPGLRLGWLVTSDPNGILQDS  103 (246)
Q Consensus        28 ~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~---~~~-~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~~~  103 (246)
                      ++++|.++|++||+..|+..+|+-=..     ..+..+..   .++ -+++.|+.|-|..| ..-+.+.++++       
T Consensus       173 ~i~~IakiC~~~~IPhlvNnAYgvQ~~-----~~~~~i~~a~~~GRvda~vqS~dkNF~VP-vGgai~As~~~-------  239 (389)
T PF05889_consen  173 DIEEIAKICKEYDIPHLVNNAYGVQSS-----KCMHLIQQAWRVGRVDAFVQSTDKNFMVP-VGGAIMASFDP-------  239 (389)
T ss_dssp             -HHHHHHHHHHHT--EEEEGTTTTT-H-----HHHHHHHHHHHHSTCSEEEEEHHHHHCEE-SSHEEEEESSH-------
T ss_pred             cHHHHHHHHHHcCCceEEccchhhhHH-----HHHHHHHHHHhcCCcceeeeecCCCEEec-CCCcEEEecCH-------
Confidence            599999999999999999999984110     11111111   112 27899999998653 22244444442       


Q ss_pred             hHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchH---HHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEe
Q 042445          104 GIVDSIKIF-LNISSDPATFIQGAVPQILEKTEE---EFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKL  179 (246)
Q Consensus       104 ~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~---~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~  179 (246)
                      ..+..+... .+-.  ...........++.-+..   .-+.++.+.+....+.+.+.-++.+ -.....|.-...+-+.+
T Consensus       240 ~~i~~vs~~YpGRa--s~sp~ld~~itLl~LG~~g~~~ll~~r~~~f~~l~erl~~~aee~~-e~ll~~p~N~is~a~tl  316 (389)
T PF05889_consen  240 SGILAVSKEYPGRA--SASPSLDLFITLLSLGCTGYGALLKERKASFPYLKERLKKWAEEVG-ERLLETPRNHISMAFTL  316 (389)
T ss_dssp             HHHHHHHHTSHSHB--TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-EEBSSSTT-SSEEEEE-
T ss_pred             HHHHHHHHHhhhhh--hcccchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhcCCCCCCeeEEEEC
Confidence            677777654 3222  233334455555554332   2333333333333333333333332 11123444344444444


Q ss_pred             ccccccCCC-ChHHHHHHHHHhcCeEE----ecCCCc---C----CCCeEEEEee--cChHHHHHHHHHHHHHHH
Q 042445          180 NYSLLEGIN-SDMEFALKLAKEESVIV----LPGITV---G----LKDWLRITFA--VEPSALENGLGRMKAFYD  240 (246)
Q Consensus       180 ~~~~~~~~~-~~~~~~~~ll~~~gi~v----~pg~~f---~----~~~~iRls~~--~~~~~l~~~~~~l~~~~~  240 (246)
                      +.  +.... .+.-++...|..+||.-    .|+..+   +    ...++-++-+  .+.++++..+++|.+.++
T Consensus       317 ~~--l~~~~~k~~~~lgs~Lf~R~VsG~RvV~~~~~~~tsh~~~yp~~Ylt~AsaiG~~~eevd~~v~rL~k~i~  389 (389)
T PF05889_consen  317 DT--LYEISQKDGTFLGSMLFKRGVSGIRVVTPGGKKQTSHSSNYPCPYLTAASAIGMTREEVDYFVKRLDKIIK  389 (389)
T ss_dssp             TT--CCTCCSSHHHHHHHHHHHTTEESSEEEETSSCEEETTSS--SSSEEEEEE-TT--HHHHHHHHHHHHHHHH
T ss_pred             cc--chhhccchhhhHHHHHHhCCcccceeeccCCCcccccCCCCchHHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence            42  11111 24567777788887642    222111   0    1377877544  599999999999999875

Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.

>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]

Probab=97.48  E-value=0.0083  Score=49.74  Aligned_cols=152  Identities=16%  Similarity=0.108  Sum_probs=95.7

Q ss_pred             EEEcccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHH-h------------h-hcCCCCchHHHHHHHHHhhch-H
Q 042445           72 LTLGSISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIF-L------------N-ISSDPATFIQGAVPQILEKTE-E  136 (246)
Q Consensus        72 i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~-~------------~-~~~~~~~~~q~~~~~~l~~~~-~  136 (246)
                      ++..+.-|.+|..|  ++-++.++        ++++++..+ .            + +..+++.+..+.....+.... .
T Consensus       193 viyagaQKnlGpaG--ltvvIvr~--------~~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~  262 (365)
T COG1932         193 VIYAGAQKNLGPAG--LTVVIVRP--------DLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQ  262 (365)
T ss_pred             eEEEehhhccCccc--eEEEEEcH--------HHHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHc
Confidence            55667889999999  88888888        777777553 1            1 111334444444444443211 1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCcccc--CCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCC
Q 042445          137 EFFSKIIDILRETADKCCDRLKEIPCITCPK--KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLK  214 (246)
Q Consensus       137 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~  214 (246)
                      --++...++-+++.+.+.+.+++.+.....+  ...+-+.+.+.+.+..+     +..++. .++++|+...-|.  ...
T Consensus       263 GGl~~~~~rn~~ka~~LY~~id~s~fy~~~v~~~~RS~mnV~f~~~~~~l-----d~~fv~-eae~~gl~~lkGh--r~v  334 (365)
T COG1932         263 GGLEALEARNQAKAQLLYDWIDKSDFYRNLVAKANRSRMNVTFTLVDAEL-----DKGFVA-EAEAAGLIYLKGH--RSV  334 (365)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhCCccccccchhhccceeEEEEcCcHHH-----HHHHHH-HHHHcCCceeccc--cCC
Confidence            2367777788899999999998864322222  23456777777765543     455555 4667777776662  235


Q ss_pred             CeEEEEeec--ChHHHHHHHHHHHHHHHH
Q 042445          215 DWLRITFAV--EPSALENGLGRMKAFYDR  241 (246)
Q Consensus       215 ~~iRls~~~--~~~~l~~~~~~l~~~~~~  241 (246)
                      +.+|.|+..  +.++++.+++-+..+.++
T Consensus       335 gGmRasiynA~~~e~veaL~~fm~~f~~~  363 (365)
T COG1932         335 GGLRASIYNAVPLEDVEALTDFMDWFEET  363 (365)
T ss_pred             CceeeeeecCCCHHHHHHHHHHHHHHHHh
Confidence            679999985  777777766666666544

>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria []

Probab=97.45  E-value=0.00087  Score=55.54  Aligned_cols=97  Identities=15%  Similarity=0.225  Sum_probs=60.3

Q ss_pred             hhhhhhhccc-----cccCCcCCCccCCChhhHHHHHHHHHHc--CCEEEEccccCCcccCCCCCccccccCCcccEEEE
Q 042445            2 ELINQDITRE-----FSDFQVFHVGSGFSGSFVSPIAETAKKL--GIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTL   74 (246)
Q Consensus         2 e~~~~~~~~~-----~~~~p~NPtG~~~~~~~~~~l~~~~~~~--~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~   74 (246)
                      |.+++.++++     +.-+-+.-+=..++.+++++++++.++.  ++++++|++|.+|+-...|.    .++.+   ++.
T Consensus       145 ~~i~~~~~~~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE~~EP~----~vGAD---l~a  217 (403)
T PF06838_consen  145 EAIKKALKPNTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVETQEPT----EVGAD---LMA  217 (403)
T ss_dssp             HHHHHHHHTTEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTSSS-GG----GGT-S---EEE
T ss_pred             HHHHHhhccCceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceeccccCcc----ccchh---hee
Confidence            3455555543     3333333333478889999999999865  79999999999998553221    22322   889


Q ss_pred             cccccccccCCc-eEEEEEeeCCCCCcchhhHHHHHHHHh
Q 042445           75 GSISKRGIVPGL-RLGWLVTSDPNGILQDSGIVDSIKIFL  113 (246)
Q Consensus        75 ~s~sK~~~~~g~-r~G~i~~~~~~~~~~~~~~~~~l~~~~  113 (246)
                      ||+-|.-|+.=. --||+++..        +++++.....
T Consensus       218 GSLIKNpGGgiAptGGYIaGr~--------~lVe~~a~RL  249 (403)
T PF06838_consen  218 GSLIKNPGGGIAPTGGYIAGRK--------DLVERAAYRL  249 (403)
T ss_dssp             EETTSGGGTTT-SS-EEEEESH--------HHHHHHHHHH
T ss_pred             ccceeCCCCCccCcCCEEechH--------HHHHHHHhhh
Confidence            999998654211 238888888        9999887653

; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.

>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=97.43  E-value=0.003  Score=53.78  Aligned_cols=147  Identities=18%  Similarity=0.141  Sum_probs=83.3

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCcc-ccccCCcccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVS-MGVFGSIVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~-~~~~~~~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      +.+.....||.+   +++++|.++|+++|+|+.+|-+|++..+-.+.... ...+..- .-|.+ ++.|.+++| ..+|+
T Consensus       199 vat~Gtt~~Ga~---D~l~~i~~i~~~~~~wlHVDaA~gg~~~~~~~~~~~~~gi~~a-dSit~-d~HK~l~~P-~~~~~  272 (373)
T PF00282_consen  199 VATAGTTNTGAI---DPLEEIADICEKYNIWLHVDAAYGGSALLSPEYRHLLFGIERA-DSITI-DPHKWLGVP-YGCGV  272 (373)
T ss_dssp             EEEBS-TTTSBB----SHHHHHHHHHHCT-EEEEEETTGGGGGGHCTTGGGGTTGGGE-SEEEE-ETTTTTS-S-SS-EE
T ss_pred             eccCCCcccccc---cCHHHHhhhccccceeeeecccccccccccccccccccccccc-ccccc-chhhhhcCC-cccee
Confidence            445555566666   67999999999999999999999984322111211 1222211 22333 478996544 68899


Q ss_pred             EEeeCCCCCcchhhHHHHHH----HHh--------------hhcCCCCchHHHHHHHHHh--hchHHHHHHHHHHHHHHH
Q 042445           91 LVTSDPNGILQDSGIVDSIK----IFL--------------NISSDPATFIQGAVPQILE--KTEEEFFSKIIDILRETA  150 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~----~~~--------------~~~~~~~~~~q~~~~~~l~--~~~~~~~~~~~~~~~~~~  150 (246)
                      ++..+.       ..+....    .+.              +.+...|. ...++..++.  ....+-+++..+...+.+
T Consensus       273 ~l~r~~-------~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~tl~~SR-~~~alk~w~~l~~~G~~G~~~~i~~~~~~a  344 (373)
T PF00282_consen  273 LLVRDK-------SDLRDAFSINADYLGNDDRESDESYDYGDYTLQGSR-RFRALKLWATLKSLGREGYRERIRRCIELA  344 (373)
T ss_dssp             EEESSG-------GGHHGGGEEEETCTT-S-SSS-GGGCEEEGSSSSSG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeecc-------cchHHHhccChhhhcccccccccccccccccccccc-cchHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            998874       2222211    010              01112233 3333333333  223456777777778899


Q ss_pred             HHHHHHhhcCCCCccccCCCCc
Q 042445          151 DKCCDRLKEIPCITCPKKPEGS  172 (246)
Q Consensus       151 ~~l~~~L~~~~~~~~~~~~~~g  172 (246)
                      +.+.+.|++.+++..+.+|.-+
T Consensus       345 ~~l~~~l~~~~~~el~~~~~~~  366 (373)
T PF00282_consen  345 RYLADRLRKDPRFELVNEPDLN  366 (373)
T ss_dssp             HHHHHHHHTSTTEEESSTTSSS
T ss_pred             HHHHHHHHhCCCEEEEcCCCce
Confidence            9999999998887754444433

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....

>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor

Probab=97.27  E-value=0.00096  Score=55.57  Aligned_cols=148  Identities=20%  Similarity=0.162  Sum_probs=53.7

Q ss_pred             hhhhhhccc----cccCCcCCCccCC-ChhhHHHHHHHHHHcCCEEEEccccCCcc----cCCCCCccccccCCcccEEE
Q 042445            3 LINQDITRE----FSDFQVFHVGSGF-SGSFVSPIAETAKKLGIMVIANEVYGHLA----FGNTPFVSMGVFGSIVPLLT   73 (246)
Q Consensus         3 ~~~~~~~~~----~~~~p~NPtG~~~-~~~~~~~l~~~~~~~~~~ii~De~y~~~~----~~~~~~~~~~~~~~~~~~i~   73 (246)
                      .++++|+++    +-.+++|-.-.-+ ..-.++++++++++||+++++|-.=+.+.    ++-.+-+++...-...--++
T Consensus       128 Dye~AI~e~Ta~ll~Vh~Sn~~i~GFt~~~~~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~GaDlV  207 (367)
T PF03841_consen  128 DYEKAITENTAALLKVHTSNFRIQGFTGEVSLEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLAAGADLV  207 (367)
T ss_dssp             ---------------------------------HHHHHHHHHT--EEEE-TTHHHHHHHTT----------CCCCT-SEE
T ss_pred             cccccccccccccccccccccccccccccccHHHHHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhhcCCCEE
Confidence            456677766    3445566632211 12258999999999999999997532111    11001112222222223377


Q ss_pred             EcccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhch-----------HHHHHH
Q 042445           74 LGSISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTE-----------EEFFSK  141 (246)
Q Consensus        74 ~~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~-----------~~~~~~  141 (246)
                      +.|=.|.+|+|-  .|.+++..        +++++++.. ..-...+......++.+.|....           ...+..
T Consensus       208 ~fSGdKlLGGPQ--aGiI~Gkk--------~lI~~lk~~pl~RalrvdK~tla~L~atL~~Y~~~~~~~~~ip~l~ml~~  277 (367)
T PF03841_consen  208 TFSGDKLLGGPQ--AGIIVGKK--------ELIEKLKKHPLGRALRVDKLTLAALEATLRLYLDPDKAKEEIPTLRMLTQ  277 (367)
T ss_dssp             EEETTSSSSS-S---EEEEEEH--------HHHHHHHHHHHTTT-B--HHHHHHHHHHHHH-------------------
T ss_pred             EEECCCcCCCCC--eEEEEeCH--------HHHHHHhhCCCcceEeeCHHHHHHHHHHHHHHHHhhcccccccccccccc
Confidence            788899988876  69999998        999999875 22233678888877777776322           123555


Q ss_pred             HHHHHHHHHHHHHHHhhcC
Q 042445          142 IIDILRETADKCCDRLKEI  160 (246)
Q Consensus       142 ~~~~~~~~~~~l~~~L~~~  160 (246)
                      ..+.++++.+.+...|+..
T Consensus       278 ~~~~L~~rA~~l~~~l~~~  296 (367)
T PF03841_consen  278 SLEELRARAERLAAQLKAA  296 (367)
T ss_dssp             -------------------
T ss_pred             ccccccccccccccccccc
Confidence            6666777777777777663

3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.

>KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism]

Probab=97.26  E-value=0.058  Score=46.22  Aligned_cols=95  Identities=13%  Similarity=0.029  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee
Q 042445          143 IDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA  222 (246)
Q Consensus       143 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~  222 (246)
                      .+..-+.++.+.+.+.+-+-+.. ..+.-=-.+++++....    ..+..++.++.....|.+.|... ...-.||++++
T Consensus       376 iR~h~~La~~fe~lv~~d~~FE~-~~~~~lgLvcFRlk~~N----~~ne~Ll~~in~~g~i~l~~~~l-~gk~vlRf~V~  449 (511)
T KOG0628|consen  376 IREHVRLAKEFETLVRADPRFEI-VNKRILGLVCFRLKGDN----EINEALLNRLNSSGRIHLVPASL-HGKFVLRFAVC  449 (511)
T ss_pred             HHHHHHHHHHHHHHhhcCCccee-ecccccceeEEeecCCc----HHHHHHHHHHHhcCcEEEEEeee-cceEEEEEEec
Confidence            33334445555555544334442 23322222333444321    12677788888888898888553 23557999998


Q ss_pred             c---ChHHHHHHHHHHHHHHHHHh
Q 042445          223 V---EPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       223 ~---~~~~l~~~~~~l~~~~~~~~  243 (246)
                      .   ++++++++.+.|.+..+++.
T Consensus       450 s~~t~~~di~~a~~~I~~~a~~l~  473 (511)
T KOG0628|consen  450 SPLTNESDIDEAWKIIFEAADELF  473 (511)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHH
Confidence            4   78899999999988877644

>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]

Probab=97.09  E-value=0.0062  Score=51.30  Aligned_cols=119  Identities=17%  Similarity=0.087  Sum_probs=76.7

Q ss_pred             hHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCCCcchhhHHH
Q 042445           28 FVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQDSGIVD  107 (246)
Q Consensus        28 ~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~  107 (246)
                      ..++++++|+++|+++++|..=....-........-..+   --+++.|-.|.+++|  +-|.|++.+        ++++
T Consensus       175 ~~~~l~~ia~~~~lpvivD~aSg~~v~~e~~l~~~la~G---aDLV~~SgdKllgGP--qaGii~GkK--------elI~  241 (395)
T COG1921         175 SEEELVEIAHEKGLPVIVDLASGALVDKEPDLREALALG---ADLVSFSGDKLLGGP--QAGIIVGKK--------ELIE  241 (395)
T ss_pred             cHHHHHHHHHHcCCCEEEecCCccccccccchhHHHhcC---CCEEEEecchhcCCC--ccceEechH--------HHHH
Confidence            367899999999999999987654432222222222222   237888889997755  588999988        9999


Q ss_pred             HHHHH-hhhcCCCCchHHHHHHHHHhhch----HHHHHHHHHHHHHHHHHHHHHhhc
Q 042445          108 SIKIF-LNISSDPATFIQGAVPQILEKTE----EEFFSKIIDILRETADKCCDRLKE  159 (246)
Q Consensus       108 ~l~~~-~~~~~~~~~~~q~~~~~~l~~~~----~~~~~~~~~~~~~~~~~l~~~L~~  159 (246)
                      ++++. ......+.....+++.++|+.-.    ..+.....+.+....+.+.+..+.
T Consensus       242 ~lq~~~l~Ralrv~K~tla~l~~aLe~y~~~~~~~~~~~~~~~l~~~~~~l~~~~~~  298 (395)
T COG1921         242 KLQSHPLKRALRVDKETLAALEAALELYLQPEILGERLRTLRLLTQPAEALLAQAGR  298 (395)
T ss_pred             HHHhhhhhhhhhcCcHhHHHHHHHHHHHcCchhhhhhhHHHHhhccHHHHHHHHhhh
Confidence            99876 33444788888888888887422    122333333344444555554444

>KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism]

Probab=96.89  E-value=0.015  Score=49.25  Aligned_cols=203  Identities=13%  Similarity=0.065  Sum_probs=103.2

Q ss_pred             hhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCc-cccccCCcccEEEEcccccccccCCceEEEEEeeCCCCCcchhh
Q 042445           26 GSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFV-SMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQDSG  104 (246)
Q Consensus        26 ~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~-~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~  104 (246)
                      -+++..|+++|++|++|+.+|.+|.+...=...+. -+...... +-+ -.+..|.. ++.+.++..+....       .
T Consensus       269 FDdL~~iadiC~k~~lWmHvDAAwGGglLmS~k~R~kl~Giera-~Sv-twnpHK~~-gaplqCsa~l~r~~-------g  338 (510)
T KOG0629|consen  269 FDDLNGIADICEKHKLWMHVDAAWGGGLLMSRKHRHKLTGIERA-NSV-TWNPHKLM-GAPLQCSAFLTREE-------G  338 (510)
T ss_pred             cCcHHHHHHHHHhcCEEEEeecccccccccChhhHhhccCcccc-Cce-eecHHHhh-cCcchhhHHHHHHH-------H
Confidence            36899999999999999999999997443221111 11222221 212 23456885 44467777666653       4


Q ss_pred             HHHHHHHHh-h----------hcC-CCCchHHHH-----HHHHHh--hchHHHHHHHHHHHHHHHHHHHHHhhcCCCCcc
Q 042445          105 IVDSIKIFL-N----------ISS-DPATFIQGA-----VPQILE--KTEEEFFSKIIDILRETADKCCDRLKEIPCITC  165 (246)
Q Consensus       105 ~~~~l~~~~-~----------~~~-~~~~~~q~~-----~~~~l~--~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~  165 (246)
                      ++.+..+.. .          ..+ +..-..|-.     ..-+|-  .....-.++...++-+.++++.+.|++-++..-
T Consensus       339 ll~~Cn~~~A~YLFq~dK~YdvS~DTgdK~iQCGRh~D~FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~~~~~  418 (510)
T KOG0629|consen  339 LLQRCNQMSAIYLFQQDKFYDVSYDTGDKAIQCGRHVDVFKLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLREREGFEM  418 (510)
T ss_pred             HHHhhcccchhhhhccCceeecccccccchhhcCccccHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhccccee
Confidence            444443321 0          000 111111111     111222  111234566677788899999999998766543


Q ss_pred             ccCCCCceEEEE-EeccccccCCCChHHH----------HHHHHHhcCeEEecCCCcCC-CCeEEEEeec---ChHHHHH
Q 042445          166 PKKPEGSMFVMV-KLNYSLLEGINSDMEF----------ALKLAKEESVIVLPGITVGL-KDWLRITFAV---EPSALEN  230 (246)
Q Consensus       166 ~~~~~~g~~~~~-~~~~~~~~~~~~~~~~----------~~~ll~~~gi~v~pg~~f~~-~~~iRls~~~---~~~~l~~  230 (246)
                      +..++.-+..+. ...++.+++...+.+.          +.....+.|..-..-...+. ++++|+.++.   +..+++-
T Consensus       419 l~~~~pe~~nv~fw~vp~~lR~~~~~~e~~~rL~kVaPkIK~~Mm~~Gt~Mi~YqPl~~~~nffr~v~sn~a~~~ad~df  498 (510)
T KOG0629|consen  419 LFELEPEHVNVCFWYVPPSLRGWQENPERDSRLVKVAPKIKERMMKKGTTMIGYQPLGDKPNFFRMVISNPALTEADLDF  498 (510)
T ss_pred             hhcCCCceEEEeeccCchHhccCcccchhhhHHHhhCcHHHHHHHhccceeeEecccccccchhheecccchhhhhhHHH
Confidence            444333322222 1222233333333222          22223344432221111111 7899998885   5566777


Q ss_pred             HHHHHHHH
Q 042445          231 GLGRMKAF  238 (246)
Q Consensus       231 ~~~~l~~~  238 (246)
                      .++-|++.
T Consensus       499 lldEIerl  506 (510)
T KOG0629|consen  499 LLDEIERL  506 (510)
T ss_pred             HHHHHHHh
Confidence            76666554

>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1

Probab=96.44  E-value=0.24  Score=42.78  Aligned_cols=191  Identities=16%  Similarity=0.114  Sum_probs=89.5

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccccccccc----CCce
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIV----PGLR   87 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~----~g~r   87 (246)
                      ++.+| |-.|.+-+   +++|.++++++|.++++ -+ .......  ..+...++.   -|++++ +|.||.    .|=-
T Consensus       202 ~vq~P-n~~G~~ed---~~~i~~~~h~~gal~~~-~a-d~~aL~~--l~~Pge~GA---DI~vg~-~Q~fg~p~~~GGP~  269 (429)
T PF02347_consen  202 MVQNP-NTFGVFED---IKEIADIAHAAGALVIV-GA-DPNALGG--LKSPGEYGA---DIVVGE-HQTFGIPMGFGGPG  269 (429)
T ss_dssp             EEESS--TTSB--T---HHHHHHHHHHTT-EEEE-CG-GCCGCCT--C--GGGGT----SEEEEC-CTTTT---CCC-S-
T ss_pred             EeecC-CCCceEee---HHHHHHHHHHcCCEEEE-ec-CHHHHhC--cCChhhcCc---cEEeeC-CCCCcccCCCCCCC
Confidence            78899 88898844   99999999999988886 22 1112211  111112221   144554 555442    2223


Q ss_pred             EEEEEeeCCCCCcchhhHHHHH----------------------------HHHh-hhcCCCCchHH-HHHHHHHhhchHH
Q 042445           88 LGWLVTSDPNGILQDSGIVDSI----------------------------KIFL-NISSDPATFIQ-GAVPQILEKTEEE  137 (246)
Q Consensus        88 ~G~i~~~~~~~~~~~~~~~~~l----------------------------~~~~-~~~~~~~~~~q-~~~~~~l~~~~~~  137 (246)
                      .|++.+.+        +++..+                            ++.+ ..+.+.|.... .++..++.....+
T Consensus       270 ~G~~a~~~--------~l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReKAtSNIctnqaL~A~~a~~Yl~~~G~~  341 (429)
T PF02347_consen  270 AGFFAVRE--------DLVRQLPGRIVGQTKDADGKRAFVLTLQTREQHIRREKATSNICTNQALLALAAAIYLAYLGPE  341 (429)
T ss_dssp             -EEEEE-G--------GGGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCCSTT---SS-HHHHHHHHHHHHHHHHH
T ss_pred             eeeEEEhh--------hhhhhCCCceecccccccccceeeeccccccccccccchhhhhhhhHHHHHHHHHHHHHHhCHH
Confidence            66776665        333222                            1111 11112232222 2334455544578


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeE
Q 042445          138 FFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWL  217 (246)
Q Consensus       138 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~i  217 (246)
                      -+++..+....++.++.+.|+++.++. +  .+..+|=++.....       . +.+.+ +.++++.-.-...+...+.+
T Consensus       342 GL~~iA~~~~~~A~yl~~~L~~~~~~~-~--~~~~f~e~v~~~~~-------~-~~~~~-l~~~~~~~gl~~~~~~~~~~  409 (429)
T PF02347_consen  342 GLREIAERIHLNAHYLAERLKKIYGLP-F--DNPFFFEFVVVFSK-------D-KEVEE-LLKRGIEGGLNLRYPDDGAL  409 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCTTBEC-S--SSSSBSSEEEEESS---------HHHHH-HHHTT----EEEGGG-SSEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcc-c--CCCCceeeeeecCC-------c-HHHHH-HHHHHHhcCCCccccCCCeE
Confidence            899999999999999999999863333 2  23334444323221       2 22223 22333322111111225566


Q ss_pred             EEEeec--ChHHHHHHHHH
Q 042445          218 RITFAV--EPSALENGLGR  234 (246)
Q Consensus       218 Rls~~~--~~~~l~~~~~~  234 (246)
                      -+|+.-  +.++++..++.
T Consensus       410 li~~TE~~t~edid~lv~~  428 (429)
T PF02347_consen  410 LICVTETRTKEDIDRLVEA  428 (429)
T ss_dssp             EEE--TT--HHHHHHHHH-
T ss_pred             EEEccCCCCHHHHHHHHhc
Confidence            677763  66677766654

4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.

>PRK12566 glycine dehydrogenase; Provisional

Probab=96.40  E-value=0.28  Score=46.46  Aligned_cols=88  Identities=9%  Similarity=0.029  Sum_probs=59.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCC
Q 042445          135 EEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLK  214 (246)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~  214 (246)
                      ..+-++++.++...+...+.+.|++. |+.. .  ...+|=-+.+....      ..+.+.....+.||.++--.    +
T Consensus       350 Gp~Gl~~ia~~~~~~a~~l~~~l~~~-g~~~-~--~~~fF~~~~v~~~~------~~~~~~~~a~~~~~n~r~~~----~  415 (954)
T PRK12566        350 GPEGLKRIAQRVHRLTAILAAGLEAK-GIKR-L--NRHFFDTLTLEVGG------AQAAIIESAEAARINLRILG----R  415 (954)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHhc-CCcc-c--cCCccceEEEEccC------CHHHHHHHHHHCCCeeEEeC----C
Confidence            35668888888888999999999884 7763 2  22566555554321      23444556777888876532    5


Q ss_pred             CeEEEEeec--ChHHHHHHHHHHH
Q 042445          215 DWLRITFAV--EPSALENGLGRMK  236 (246)
Q Consensus       215 ~~iRls~~~--~~~~l~~~~~~l~  236 (246)
                      +.+.+|+..  +.+++...+..+.
T Consensus       416 ~~~~~s~de~~~~~~~~~~~~~f~  439 (954)
T PRK12566        416 GRLGVSLDETCDEATVARLFDIFL  439 (954)
T ss_pred             CeEEEEeCCCCCHHHHHHHHHHhc
Confidence            667788873  7788888888773

>KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism]

Probab=95.41  E-value=0.23  Score=40.13  Aligned_cols=154  Identities=17%  Similarity=0.219  Sum_probs=93.7

Q ss_pred             EEEEcccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHh-------------hhcCCCCchHHHHHHHHHhhchH-
Q 042445           71 LLTLGSISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFL-------------NISSDPATFIQGAVPQILEKTEE-  136 (246)
Q Consensus        71 ~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~-------------~~~~~~~~~~q~~~~~~l~~~~~-  136 (246)
                      -+++.+.-|.+|++|+.+  ++..+        +++.......             +.+.+++.++.+++--.++...+ 
T Consensus       197 gvi~aGAQKN~G~aG~Tv--vivr~--------dllg~~~~~tP~v~dyk~~~~NnSlyNTpP~f~iy~~~Lv~~~il~~  266 (370)
T KOG2790|consen  197 GVIFAGAQKNVGPAGVTV--VIVRK--------DLLGNALDITPSVLDYKIMDKNNSLYNTPPCFGIYVMGLVFEWILEK  266 (370)
T ss_pred             ceEEeccccccCccccEE--EEEeh--------hhhcccccCCccccceeeeccccccccCCCeeeeeehhhHHHHHHhc
Confidence            366777889999998554  44445        5554433221             12224455555555444443222 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCC-ccccCC--CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC
Q 042445          137 EFFSKIIDILRETADKCCDRLKEIPCI-TCPKKP--EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL  213 (246)
Q Consensus       137 ~~~~~~~~~~~~~~~~l~~~L~~~~~~-~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~  213 (246)
                      --+....+.-.++.+.+.+.+.+..|+ .+.+.|  .+-|-+.+++.+..+     +.+++....+++ +.-.-|.  ..
T Consensus       267 GGl~a~e~~n~~KskllYd~iD~s~gfy~cpVe~~~RS~MNV~Fri~~d~L-----e~eFLkeA~~~~-mv~LKGh--RS  338 (370)
T KOG2790|consen  267 GGLAAMEKLNQEKSKLLYDAIDNSNGFYRCPVEPSVRSRMNVPFRIEKDEL-----EAEFLKEAAKEH-MVQLKGH--RS  338 (370)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhcCCeEEcccchhhhhhcccceeecchHH-----HHHHHHHHHHhh-hhccccc--cc
Confidence            236666677778999999999986554 233444  345666777765543     667777655544 3333333  23


Q ss_pred             CCeEEEEeec--ChHHHHHHHHHHHHHHHHH
Q 042445          214 KDWLRITFAV--EPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       214 ~~~iRls~~~--~~~~l~~~~~~l~~~~~~~  242 (246)
                      -+.+|-|+-.  +-++.+.+++-++++.+.+
T Consensus       339 VGGiRASlYNAisv~~~q~L~~~m~~F~k~h  369 (370)
T KOG2790|consen  339 VGGIRASLYNAISVEEVQKLAAFMKEFQKKH  369 (370)
T ss_pred             cccchhhhhccccHHHHHHHHHHHHHHHHhc
Confidence            6889999874  8888888887777776554

>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]

Probab=93.38  E-value=4.7  Score=34.70  Aligned_cols=90  Identities=13%  Similarity=0.063  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCC-CCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCC
Q 042445          136 EEFFSKIIDILRETADKCCDRLKEIP-CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLK  214 (246)
Q Consensus       136 ~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~  214 (246)
                      ..-++++.++..+....+.+.|++.+ |+.. .. + .+|--+.+..+.     ...+.+.......|+.++.-.    +
T Consensus       354 p~GLk~iA~r~~~~a~~la~~L~~~~~g~~~-~~-~-~fFdt~~v~~~~-----~~~~~l~~~~~~~G~~L~~~~----~  421 (450)
T COG0403         354 PQGLKEIAERIHRLAAYLAAGLKEIGAGVEL-VF-D-HFFDTFTVRVPE-----EVAEALLAAAIAGGINLRRVD----A  421 (450)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcCCceEe-cc-c-cceeeEEEecch-----hHHHHHHHHHHhcCCceeeec----C
Confidence            67899999999999999999999754 4542 22 2 566555454321     133444445556677665422    3


Q ss_pred             CeEEEEeec--ChHHHHHHHHHHHH
Q 042445          215 DWLRITFAV--EPSALENGLGRMKA  237 (246)
Q Consensus       215 ~~iRls~~~--~~~~l~~~~~~l~~  237 (246)
                      +.+=+++..  +.++++..++.+..
T Consensus       422 ~~~~ia~tEt~t~~~i~~l~~~~~~  446 (450)
T COG0403         422 DTVLIALTETTTKEDIDALVAAFGG  446 (450)
T ss_pred             CceEEEeecccCHHHHHHHHHHHhh
Confidence            444455552  45666666655543

>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]

Probab=93.38  E-value=0.14  Score=41.71  Aligned_cols=73  Identities=18%  Similarity=0.266  Sum_probs=49.1

Q ss_pred             CCChhhHHHHHHHHHHc--CCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCce-EEEEEeeCCCCC
Q 042445           23 GFSGSFVSPIAETAKKL--GIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLR-LGWLVTSDPNGI   99 (246)
Q Consensus        23 ~~~~~~~~~l~~~~~~~--~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r-~G~i~~~~~~~~   99 (246)
                      .++.+++++++.+.++-  |+++++|++|.+|.-...+.    ..+.   -+.-+|+-|.=|..=.. -||+.+..    
T Consensus       182 S~~I~eI~~~i~~vk~inpn~ivFVDNCYGEFvE~~EPt----~vGa---DliAGSLIKNpGGgiaktGGYiaGk~----  250 (416)
T COG4100         182 SLSIAEIEEMITFVKEINPNVIVFVDNCYGEFVEEKEPT----HVGA---DLIAGSLIKNPGGGIAKTGGYIAGKA----  250 (416)
T ss_pred             cccHHHHHHHHHHHHhcCCCEEEEEeccchhhhhccCcc----ccch---hhhccceeeCCCCceeeccceeechH----
Confidence            56778999999999866  79999999999998553221    1221   16677887773321122 26777776    


Q ss_pred             cchhhHHHHHH
Q 042445          100 LQDSGIVDSIK  110 (246)
Q Consensus       100 ~~~~~~~~~l~  110 (246)
                          ++++...
T Consensus       251 ----~~ve~~~  257 (416)
T COG4100         251 ----ELVEAAA  257 (416)
T ss_pred             ----HHHHhhc
Confidence                7776554

>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]

Probab=93.34  E-value=4.9  Score=34.76  Aligned_cols=205  Identities=13%  Similarity=0.004  Sum_probs=105.2

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccccccc------ccCC
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRG------IVPG   85 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~------~~~g   85 (246)
                      +++|| |-.|+.  ++.+.+|+++..++|..+..|.+-..-..+-      ...+...--|+=--+.|.|      |+||
T Consensus       209 MiTnP-sT~GvF--E~~I~ei~~ivH~~Gg~vY~DGANlNA~vG~------~rPGd~G~DV~HlNLHKTF~iPHGGGGPG  279 (496)
T COG1003         209 MITNP-STLGVF--EEDIREICEIVHEAGGQVYYDGANLNAIVGL------ARPGDMGFDVVHLNLHKTFCIPHGGGGPG  279 (496)
T ss_pred             EeccC-cccccc--hhhHHHHHHHHHHcCCEEEecCcchhhhhcc------ccccccccceEEeecccccccCCCCCCCC
Confidence            89999 888875  5789999999999999999997543211110      0000000001111133333      2233


Q ss_pred             ceEEEEEeeCCCCCcchhhHHHHHH----------------------HHhhhcCCCCchHHHHHHHHHhhchHHHHHHHH
Q 042445           86 LRLGWLVTSDPNGILQDSGIVDSIK----------------------IFLNISSDPATFIQGAVPQILEKTEEEFFSKII  143 (246)
Q Consensus        86 ~r~G~i~~~~~~~~~~~~~~~~~l~----------------------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~  143 (246)
                        .|-|.+..        .+...+-                      ....++.  |......+..++.....+-+++.-
T Consensus       280 --~GPvgVk~--------~L~pfLP~p~~~~~~~~y~~~~~~~~s~g~~~a~~G--s~~il~~a~~YI~~mG~~GL~~as  347 (496)
T COG1003         280 --AGPVGVKA--------HLAPFLPGPVVYHDVGEYRLDYDGKKSIGVSAAPYG--SASILPIAWAYIRMMGADGLKQAS  347 (496)
T ss_pred             --CCceehHh--------hccccCCCCcccCCCccccccCCCCccceeeccccC--cchHHHHHHHHHHHHhHHHHHHHH
Confidence              33333322        1111111                      0111111  222222223333333455566666


Q ss_pred             HHHHHHHHHHHHHhhc-CCCCccccCCC--CceEEEEEecccc-ccCCCChHHHHHHHHHhcCeEEecCCCcC--CCCeE
Q 042445          144 DILRETADKCCDRLKE-IPCITCPKKPE--GSMFVMVKLNYSL-LEGINSDMEFALKLAKEESVIVLPGITVG--LKDWL  217 (246)
Q Consensus       144 ~~~~~~~~~l~~~L~~-~~~~~~~~~~~--~g~~~~~~~~~~~-~~~~~~~~~~~~~ll~~~gi~v~pg~~f~--~~~~i  217 (246)
                      +.---+++++.+.|+. .+ +- + .+.  -..=+.++..... --|+  +...+.+.|.++|+. .|-.+|.  ..+.+
T Consensus       348 e~AvLNANYia~rL~~~y~-~~-y-~~~~~~~HE~ild~r~l~~~~Gv--~~~DvAKrLlD~GfH-aPT~~FPliV~~tL  421 (496)
T COG1003         348 EVAVLNANYIARRLKGYYP-VP-Y-TGENRVAHECILDARPLKKETGV--RALDVAKRLLDYGFH-APTMYFPLIVAGTL  421 (496)
T ss_pred             HHHHHhHHHHHHHhhhcCc-cc-c-CCCCcceeEEEeechHhHhhcCC--cHHHHHHHHHhcCCC-CCcccCccccccce
Confidence            6666788889999986 32 21 1 222  1222222232110 0122  444456667799985 4556676  37777


Q ss_pred             EEEeec--ChHHHHHHHHHHHHHHHHHh
Q 042445          218 RITFAV--EPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       218 Rls~~~--~~~~l~~~~~~l~~~~~~~~  243 (246)
                      -+=.+.  +.++|++.++++.+..++.+
T Consensus       422 MIEPTEsEsk~eLDrf~dami~I~~Ea~  449 (496)
T COG1003         422 MIEPTESESKEELDRFIDAMIAIREEAD  449 (496)
T ss_pred             eecCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            776664  56678888888877766544

>KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis]

Probab=92.38  E-value=0.075  Score=42.38  Aligned_cols=218  Identities=13%  Similarity=0.098  Sum_probs=107.9

Q ss_pred             cccCCcCCCccCC--ChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCccc-EEEEcccccccccCCceE
Q 042445           12 FSDFQVFHVGSGF--SGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVP-LLTLGSISKRGIVPGLRL   88 (246)
Q Consensus        12 ~~~~p~NPtG~~~--~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~-~i~~~s~sK~~~~~g~r~   88 (246)
                      +++-. .-|....  +++.+++|..+|..|++.-|+.++|+.-...-  ..-......-++ --++.|+-|.|..|=  -
T Consensus       158 ilci~-sttscfapr~pd~leaiaaica~~diphivnnayglqsee~--i~~iaa~~~~grida~vqsldknf~vpv--g  232 (432)
T KOG3843|consen  158 ILCIH-STTSCFAPRSPDNLEAIAAICAAHDIPHIVNNAYGLQSEEC--IHKIAAAAECGRIDAFVQSLDKNFMVPV--G  232 (432)
T ss_pred             EEEEe-ecccccCCCCCchHHHHHHHHHccCchhhhccccccchHHH--HHHHHHHhhhccHHHHHHHhhhcceeec--c
Confidence            44444 3343333  44789999999999999999999998432110  000000000011 145788999987652  1


Q ss_pred             EEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchH---HHHHHHHHHHHHHHHHHHHHhhcCCCCcc
Q 042445           89 GWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEE---EFFSKIIDILRETADKCCDRLKEIPCITC  165 (246)
Q Consensus        89 G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~---~~~~~~~~~~~~~~~~l~~~L~~~~~~~~  165 (246)
                      |.+++.=.+      ..+..+.+..+ +...+.++...+...|..+..   +-..+..+.+...++.+.+.-+.++... 
T Consensus       233 gaiia~fk~------n~iq~iak~yp-grasa~ps~dllitll~~gqn~f~e~~~eqkemf~~l~~ki~~~ae~~~e~l-  304 (432)
T KOG3843|consen  233 GAIIAAFKD------NFIQEIAKMYP-GRASASPSLDLLITLLSLGQNAFKELFGEQKEMFLKLRNKIIKFAEAIGECL-  304 (432)
T ss_pred             hhHhhHhHH------HHHHHHHHhCC-CccccCccHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-
Confidence            333332111      44444444322 223344555566666665442   3344445555555555554444443222 


Q ss_pred             ccCCCCceEEEEEeccccccCC-CChHHHHHHHHHhcCe---EEecCCCcC------------C------CCeEEEE--e
Q 042445          166 PKKPEGSMFVMVKLNYSLLEGI-NSDMEFALKLAKEESV---IVLPGITVG------------L------KDWLRIT--F  221 (246)
Q Consensus       166 ~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~ll~~~gi---~v~pg~~f~------------~------~~~iRls--~  221 (246)
                      +..|+....+-+.+....  .- .....+.-..|-.+||   -|+|.+.+.            .      -+++-.+  +
T Consensus       305 ~~~p~n~is~amtl~ti~--~~k~kavt~~gsilfak~isgarvv~~~q~kttieg~ef~~f~sht~e~~~~yln~a~ai  382 (432)
T KOG3843|consen  305 LETPENEISLAMTLKTID--EAKDKAVTLFGSILFAKGISGARVVPLGQMKTTIEGCEFIGFGSHTNEQHCAYLNAACAI  382 (432)
T ss_pred             hcCCCchhhhhhhhccCC--hHHhhHHHHHHHHHHhccccCceEeeccccceeeeceEEeccccccCcCchhHhhHHHhc
Confidence            344543333332222110  00 0122333344445544   345533221            1      1333333  3


Q ss_pred             ecChHHHHHHHHHHHHHHHHHhh
Q 042445          222 AVEPSALENGLGRMKAFYDRHAE  244 (246)
Q Consensus       222 ~~~~~~l~~~~~~l~~~~~~~~~  244 (246)
                      +..+.++++.+.+|.++++++.+
T Consensus       383 gm~~hdld~~~~rl~~~~a~~~k  405 (432)
T KOG3843|consen  383 GMKDHDLDEFFNRLDRCLAAFRK  405 (432)
T ss_pred             CCcHhHHHHHHHHHHHHHHHHHH
Confidence            34788899999999888876654

>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type

Probab=83.59  E-value=36  Score=31.27  Aligned_cols=39  Identities=18%  Similarity=0.193  Sum_probs=27.1

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHH---HHcCC--EEEEccccCCcc
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETA---KKLGI--MVIANEVYGHLA   53 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~---~~~~~--~ii~De~y~~~~   53 (246)
                      +.+-..-.+|.+=+   +++|.++|   +++|+  ++.+|-+|+++.
T Consensus       283 VataGTT~~GaiDp---l~eI~~l~~~~~~~gl~~~lHVDAAyGG~~  326 (608)
T TIGR03811       283 VGVVGSTEEGAVDG---IDKIVALRNKLMKEGIYFYLHVDAAYGGYG  326 (608)
T ss_pred             EEEcCCcCCcccCC---HHHHHHHHHHHHHcCCceeEeeeccccchh
Confidence            44445557777755   55555555   77887  699999999853

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	246
3pdx_A	402	Crystal Structural Of Mouse Tyrosine Aminotransfera		5e-27
3dyd_A	427	Human Tyrosine Aminotransferase Length = 427		3e-26
1bw0_A	416	Crystal Structure Of Tyrosine Aminotransferase From		4e-19
1j32_A	388	Aspartate Aminotransferase From Phormidium Lapideum		5e-09
1xi9_A	406	Alanine Aminotransferase From Pyrococcus Furiosus P		1e-07
1wst_A	417	Crystal Structure Of Multiple Substrate Aminotransf		2e-07
4ge7_A	439	Kynurenine Aminotransferase Ii Inhibitors Length =		8e-07
4gdy_A	439	Kynurenine Aminotransferase Ii Inhibitors Length =		9e-07
1o4s_A	389	Crystal Structure Of Aspartate Aminotransferase (Tm		2e-06
2xh1_A	425	Crystal Structure Of Human Kat Ii-Inhibitor Complex		3e-06
2r2n_A	425	The Crystal Structure Of Human Kynurenine Aminotran		3e-06
2qlr_A	425	Crystal Structure Of Human Kynurenine Aminotransfer		3e-06
2vgz_A	427	Crystal Structure Of Human Kynurenine Aminotransfer		3e-06
3ue8_A	439	Kynurenine Aminotransferase Ii Inhibitors Length =		3e-06
3op7_A	375	Crystal Structure Of A Plp-Dependent Aminotransfera		9e-06
3aov_A	448	Crystal Structure Of Pyrococcus Horikoshii Kynureni		1e-05
1x0m_A	403	A Human Kynurenine Aminotransferase Ii Homologue Fr		1e-05
2z61_A	370	Crystal Structure Of Mj0684 From Methanococcus Jann		2e-05
3ele_A	398	Crystal Structure Of Amino Transferase (rer07020700		1e-04
1v2d_A	381	Crystal Structure Of T.Th Hb8 Glutamine Aminotransf		5e-04

>pdb|3PDX|A Chain A, Crystal Structural Of Mouse Tyrosine Aminotransferase Length = 402

Iteration: 1
 Score =  117 bits (294), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 107/211 (50%), Gaps = 2/211 (0%)
Query: 32  IAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91
           I   A++  + ++A+E+YG + F +  +  M    + VP+L+ G ++ R +VPG RLGW+
Sbjct: 193 ILAVAERQCVPILADEIYGDMVFSDCKYEPMATLSTNVPILSCGGLAXRWLVPGWRLGWI 252
Query: 92  VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETAD 151
           +  D   I  +  I D +         P T +QGA+  IL++T +EF+   +  L+  AD
Sbjct: 253 LIHDRRDIFGNE-IRDGLVKLSQRILGPCTIVQGALKSILQRTPQEFYQDTLSFLKSNAD 311
Query: 152 KCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITV 211
            C   L  IP +  P +P G+M++MV +         +D+EF  +L  E+SV  LP    
Sbjct: 312 LCYGALSAIPGLQ-PVRPSGAMYLMVGIEMEHFPEFENDVEFTERLIAEQSVHCLPATCF 370
Query: 212 GLKDWLRITFAVEPSALENGLGRMKAFYDRH 242
              ++ R+   V    +     R++ F ++H
Sbjct: 371 EYPNFFRVVITVPEVMMLEACSRIQEFCEQH 401

>pdb|3DYD|A Chain A, Human Tyrosine Aminotransferase Length = 427

Iteration: 1
 Score =  115 bits (287), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 106/211 (50%), Gaps = 2/211 (0%)
Query: 32  IAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91
           I   A +  + ++A+E+YG + F +  +  +    + VP+L+ G ++KR +VPG RLGW+
Sbjct: 216 ILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRWLVPGWRLGWI 275
Query: 92  VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETAD 151
           +  D   I  +  I D +         P T +QGA+  IL +T  EF+   +  L+  AD
Sbjct: 276 LIHDRRDIFGNE-IRDGLVKLSQRILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNAD 334
Query: 152 KCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITV 211
            C   L  IP +  P +P G+M++MV +         +D+EF  +L  E+SV  LP    
Sbjct: 335 LCYGALAAIPGLR-PVRPSGAMYLMVGIEMEHFPEFENDVEFTERLVAEQSVHCLPATCF 393
Query: 212 GLKDWLRITFAVEPSALENGLGRMKAFYDRH 242
              +++R+   V    +     R++ F ++H
Sbjct: 394 EYPNFIRVVITVPEVMMLEACSRIQEFCEQH 424

>pdb|1BW0|A Chain A, Crystal Structure Of Tyrosine Aminotransferase From Trypanosoma Cruzi Length = 416

Iteration: 1
 Score = 91.3 bits (225), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 109/217 (50%), Gaps = 9/217 (4%)
Query: 32  IAETAKKLGIMVIANEVYGHLAFG----NTPFVSMGVFGSIVPLLTLGSISKRGIVPGLR 87
           I   A++L + + ++E+Y  + F     N  F S+  F + VP + LG  +   +VPG R
Sbjct: 202 IVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAXNLVVPGWR 261
Query: 88  LGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILR 147
           LGWL+  DP+G       ++ +K    +   P T +Q A+ + L  T +E   +I+  + 
Sbjct: 262 LGWLLYVDPHG--NGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIE 319
Query: 148 ETADKCCDRLKEIPCI-TCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVL 206
           E+A    + + E  CI   P  P G+M++M +++      I +D+EF  KL +EE+V VL
Sbjct: 320 ESAMYLYNHIGE--CIGLAPTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVL 377
Query: 207 PGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRHA 243
           PG       + R+T           + R+KAF  RHA
Sbjct: 378 PGTIFHAPGFTRLTTTRPVEVYREAVERIKAFCQRHA 414

>pdb|1J32|A Chain A, Aspartate Aminotransferase From Phormidium Lapideum Length = 388

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/209 (21%), Positives = 97/209 (46%), Gaps = 15/209 (7%)
Query: 32  IAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFG--SIVPLLTLGSISKRGIVPGLRLG 89
           IA+ A + G+ V+++E+Y  + + +   +S+G     +    +     +K   + G R+G
Sbjct: 188 IAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVG 247
Query: 90  WLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRET 149
           +L    P        +  + KI  + +S+  TF Q       E + ++   +++    E 
Sbjct: 248 FLAGPVPL-------VKAATKIQGHSTSNVCTFAQYGAIAAYENS-QDCVQEMLAAFAER 299
Query: 150 ADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGI 209
                D L  +P + CP KP+G+ ++      S+ +   S ++F  +L  +  V  +PG 
Sbjct: 300 RRYMLDALNAMPGLECP-KPDGAFYMFP----SIAKTGRSSLDFCSELLDQHQVATVPGA 354
Query: 210 TVGLKDWLRITFAVEPSALENGLGRMKAF 238
             G  D +R+++A +   ++ G+ R++ F
Sbjct: 355 AFGADDCIRLSYATDLDTIKRGMERLEKF 383

>pdb|1XI9|A Chain A, Alanine Aminotransferase From Pyrococcus Furiosus Pfu-1397077-001 Length = 406

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 88/209 (42%), Gaps = 10/209 (4%)
Query: 32  IAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91
           I   A +  I VI++E+Y  + +     +S G     VP++ +  +SK     G RLG++
Sbjct: 199 ILNIAGEYEIPVISDEIYDLMTYEGE-HISPGSLTKDVPVIVMNGLSKVYFATGWRLGYM 257
Query: 92  VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETAD 151
              DP   L  S + ++I     I   P T  Q A    L     ++  + +  L+E  D
Sbjct: 258 YFVDPENKL--SEVREAIDRLARIRLCPNTPAQFAAIAGL-TGPMDYLKEYMKKLKERRD 314
Query: 152 KCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITV 211
               RL EIP I+   KP+G+ ++  K+     +   +D EF L +     V+ + G   
Sbjct: 315 YIYKRLNEIPGIST-TKPQGAFYIFPKIEVGPWK---NDKEFVLDVLHNAHVLFVHGSGF 370
Query: 212 GL--KDWLRITFAVEPSALENGLGRMKAF 238
           G       R  F      LE  + R + F
Sbjct: 371 GEYGAGHFRAVFLPPIEILEEAMDRFEKF 399

>pdb|1WST|A Chain A, Crystal Structure Of Multiple Substrate Aminotransferase (Msat) From Thermococcus Profundus Length = 417

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 93/209 (44%), Gaps = 21/209 (10%)
Query: 34  ETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVT 93
           E A +   +++ +  Y  L +   P   +  F     ++ LG+ SK  + PG R+GW V 
Sbjct: 210 ELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDYGRVIYLGTFSKI-LAPGFRIGW-VA 267
Query: 94  SDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADK 152
           + P+ I +      SI +  N      TF Q    + +E    +E   KII+  +   D 
Sbjct: 268 AHPHLIRKMEIAKQSIDLCTN------TFGQAIAWKYVENGYLDEHIPKIIEFYKPRRDA 321
Query: 153 CCDRLKE-IPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPG--- 208
             + L+E +P      KPEG MFV V    +L EGI++ +     +AK   V  +PG   
Sbjct: 322 MLEALEEYMPEGVEWTKPEGGMFVRV----TLPEGIDTKLMMERAVAK--GVAYVPGEAF 375
Query: 209 -ITVGLKDWLRITFAVEP-SALENGLGRM 235
            +    K+ +R+ F   P   +  G+ R+
Sbjct: 376 FVHRDKKNTMRLNFTYVPEETIREGVRRL 404

>pdb|4GE7|A Chain A, Kynurenine Aminotransferase Ii Inhibitors Length = 439

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 86/192 (44%), Gaps = 38/192 (19%)
Query: 32  IAETAKKLGIMVIANEVYGHLAF--GNTP-FVSMGVFGSIVPLLTLGSISKRGIVPGLRL 88
           I E A+K   ++I ++ Y  L F  G  P F+SM V G ++   +   I    I  GLR+
Sbjct: 216 IYELARKYDFLIIEDDPYYFLQFNSGRVPTFLSMDVDGRVIRADSFSKI----ISSGLRI 271
Query: 89  GWLVTSDPNGILQDSGIVDSIKIFLNISS-DPATFIQGAVPQILEKTEEE---------- 137
           G+L    P        +++ + + + +S+  P+TF Q  + Q+L +  EE          
Sbjct: 272 GFLTGPKP--------LIERVILHIQVSTLHPSTFNQLMISQLLHEWGEEGFMAHVDRVI 323
Query: 138 -FFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALK 196
            F+S   D +   ADK    L E         P   MF+ +K     ++GIN   E   +
Sbjct: 324 DFYSNQKDAILAAADKWLTGLAEWHV------PAAGMFLWIK-----VKGINDVKELIEE 372
Query: 197 LAKEESVIVLPG 208
            A +  V++LPG
Sbjct: 373 KAVKMGVLMLPG 384

>pdb|4GDY|A Chain A, Kynurenine Aminotransferase Ii Inhibitors Length = 439

Iteration: 1
 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 86/192 (44%), Gaps = 38/192 (19%)
Query: 32  IAETAKKLGIMVIANEVYGHLAF--GNTP-FVSMGVFGSIVPLLTLGSISKRGIVPGLRL 88
           I E A+K   ++I ++ Y  L F  G  P F+SM V G ++   +   I    I  GLR+
Sbjct: 216 IYELARKYDFLIIEDDPYYFLQFNSGRVPTFLSMDVDGRVIRADSFSKI----ISSGLRI 271
Query: 89  GWLVTSDPNGILQDSGIVDSIKIFLNISS-DPATFIQGAVPQILEKTEEE---------- 137
           G+L    P        +++ + + + +S+  P+TF Q  + Q+L +  EE          
Sbjct: 272 GFLTGPKP--------LIERVILHIQVSTLHPSTFNQLMISQLLHEWGEEGFMAHVDRVI 323
Query: 138 -FFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALK 196
            F+S   D +   ADK    L E         P   MF+ +K     ++GIN   E   +
Sbjct: 324 DFYSNQKDAILAAADKWLTGLAEWHV------PAAGMFLWIK-----VKGINDVKELIEE 372
Query: 197 LAKEESVIVLPG 208
            A +  V++LPG
Sbjct: 373 KAVKMGVLMLPG 384

>pdb|1O4S|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1255) From Thermotoga Maritima At 1.90 A Resolution Length = 389

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 90/203 (44%), Gaps = 20/203 (9%)
Query: 36  AKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSD 95
           AKK    +I++EVY  L + +     + V      ++ +   SK   + G R+G+L++S+
Sbjct: 203 AKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSE 262
Query: 96  PNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD 155
                         KI  + +S   T  Q A  + LE       S ++   +E  +   +
Sbjct: 263 KVATAVS-------KIQSHTTSCINTVAQYAALKALEVDN----SYMVQTFKERKNFVVE 311
Query: 156 RLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKD 215
           RLK++       +PEG+ ++  K+          D++F  +L +E+ V ++PG       
Sbjct: 312 RLKKMGVKFV--EPEGAFYLFFKVR-------GDDVKFCERLLEEKKVALVPGSAFLKPG 362
Query: 216 WLRITFAVEPSALENGLGRMKAF 238
           ++R++FA     L   L R++ F
Sbjct: 363 FVRLSFATSIERLTEALDRIEDF 385

>pdb|2XH1|A Chain A, Crystal Structure Of Human Kat Ii-Inhibitor Complex Length = 425

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 84/192 (43%), Gaps = 38/192 (19%)
Query: 32  IAETAKKLGIMVIANEVYGHLAFGN---TPFVSMGVFGSIVPLLTLGSISKRGIVPGLRL 88
           I E A+K   ++I ++ Y  L F       F+SM V G ++   +   I    I  GLR+
Sbjct: 216 IYELARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKI----ISSGLRI 271
Query: 89  GWLVTSDPNGILQDSGIVDSIKIFLNISS-DPATFIQGAVPQILEKTEEE---------- 137
           G+L    P        +++ + + + +S+  P+TF Q  + Q+L +  EE          
Sbjct: 272 GFLTGPKP--------LIERVILHIQVSTLHPSTFNQLMISQLLHEWGEEGFMAHVDRVI 323
Query: 138 -FFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALK 196
            F+S   D +   ADK    L E         P   MF+ +K     ++GIN   E   +
Sbjct: 324 DFYSNQKDAILAAADKWLTGLAEWHV------PAAGMFLWIK-----VKGINDVKELIEE 372
Query: 197 LAKEESVIVLPG 208
            A +  V++LPG
Sbjct: 373 KAVKMGVLMLPG 384

>pdb|2R2N|A Chain A, The Crystal Structure Of Human Kynurenine Aminotransferase Ii In Complex With Kynurenine Length = 425

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 84/192 (43%), Gaps = 38/192 (19%)
Query: 32  IAETAKKLGIMVIANEVYGHLAFGN---TPFVSMGVFGSIVPLLTLGSISKRGIVPGLRL 88
           I E A+K   ++I ++ Y  L F       F+SM V G ++   +   I    I  GLR+
Sbjct: 216 IYELARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKI----ISSGLRI 271
Query: 89  GWLVTSDPNGILQDSGIVDSIKIFLNISS-DPATFIQGAVPQILEKTEEE---------- 137
           G+L    P        +++ + + + +S+  P+TF Q  + Q+L +  EE          
Sbjct: 272 GFLTGPKP--------LIERVILHIQVSTLHPSTFNQLMISQLLHEWGEEGFMAHVDRVI 323
Query: 138 -FFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALK 196
            F+S   D +   ADK    L E         P   MF+ +K     ++GIN   E   +
Sbjct: 324 DFYSNQKDAILAAADKWLTGLAEWHV------PAAGMFLWIK-----VKGINDVKELIEE 372
Query: 197 LAKEESVIVLPG 208
            A +  V++LPG
Sbjct: 373 KAVKMGVLMLPG 384

>pdb|2QLR|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase Ii Length = 425

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 84/192 (43%), Gaps = 38/192 (19%)
Query: 32  IAETAKKLGIMVIANEVYGHLAFGN---TPFVSMGVFGSIVPLLTLGSISKRGIVPGLRL 88
           I E A+K   ++I ++ Y  L F       F+SM V G ++   +   I    I  GLR+
Sbjct: 216 IYELARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSXI----ISSGLRI 271
Query: 89  GWLVTSDPNGILQDSGIVDSIKIFLNISS-DPATFIQGAVPQILEKTEEE---------- 137
           G+L    P        +++ + + + +S+  P+TF Q  + Q+L +  EE          
Sbjct: 272 GFLTGPKP--------LIERVILHIQVSTLHPSTFNQLMISQLLHEWGEEGFMAHVDRVI 323
Query: 138 -FFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALK 196
            F+S   D +   ADK    L E         P   MF+ +K     ++GIN   E   +
Sbjct: 324 DFYSNQKDAILAAADKWLTGLAEWHV------PAAGMFLWIK-----VKGINDVKELIEE 372
Query: 197 LAKEESVIVLPG 208
            A +  V++LPG
Sbjct: 373 KAVKMGVLMLPG 384

>pdb|2VGZ|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase Ii Length = 427

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 84/192 (43%), Gaps = 38/192 (19%)
Query: 32  IAETAKKLGIMVIANEVYGHLAFGN---TPFVSMGVFGSIVPLLTLGSISKRGIVPGLRL 88
           I E A+K   ++I ++ Y  L F       F+SM V G ++   +   I    I  GLR+
Sbjct: 218 IYELARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSXI----ISSGLRI 273
Query: 89  GWLVTSDPNGILQDSGIVDSIKIFLNISS-DPATFIQGAVPQILEKTEEE---------- 137
           G+L    P        +++ + + + +S+  P+TF Q  + Q+L +  EE          
Sbjct: 274 GFLTGPKP--------LIERVILHIQVSTLHPSTFNQLMISQLLHEWGEEGFMAHVDRVI 325
Query: 138 -FFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALK 196
            F+S   D +   ADK    L E         P   MF+ +K     ++GIN   E   +
Sbjct: 326 DFYSNQKDAILAAADKWLTGLAEWHV------PAAGMFLWIK-----VKGINDVKELIEE 374
Query: 197 LAKEESVIVLPG 208
            A +  V++LPG
Sbjct: 375 KAVKMGVLMLPG 386

>pdb|3UE8|A Chain A, Kynurenine Aminotransferase Ii Inhibitors Length = 439

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 84/192 (43%), Gaps = 38/192 (19%)
Query: 32  IAETAKKLGIMVIANEVYGHLAFGN---TPFVSMGVFGSIVPLLTLGSISKRGIVPGLRL 88
           I E A+K   ++I ++ Y  L F       F+SM V G ++   +   I    I  GLR+
Sbjct: 216 IYELARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKI----ISSGLRI 271
Query: 89  GWLVTSDPNGILQDSGIVDSIKIFLNISS-DPATFIQGAVPQILEKTEEE---------- 137
           G+L    P        +++ + + + +S+  P+TF Q  + Q+L +  EE          
Sbjct: 272 GFLTGPKP--------LIERVILHIQVSTLHPSTFNQLMISQLLHEWGEEGFMAHVDRVI 323
Query: 138 -FFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALK 196
            F+S   D +   ADK    L E         P   MF+ +K     ++GIN   E   +
Sbjct: 324 DFYSNQKDAILAAADKWLTGLAEWHV------PAAGMFLWIK-----VKGINDVKELIEE 372
Query: 197 LAKEESVIVLPG 208
            A +  V++LPG
Sbjct: 373 KAVKMGVLMLPG 384

>pdb|3OP7|A Chain A, Crystal Structure Of A Plp-Dependent Aminotransferase (Zp_03625122.1) From Streptococcus Suis 89-1591 At 1.70 A Resolution Length = 375

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 44/211 (20%), Positives = 92/211 (43%), Gaps = 20/211 (9%)
Query: 32  IAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91
           + E A ++G  ++++EVY   +  + P + + V+   +    + S+S    +PG+R+GW+
Sbjct: 179 LVEIASEVGAYILSDEVYRSFSELDVPSI-IEVYDKGI---AVNSLSXTYSLPGIRIGWV 234
Query: 92  VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETAD 151
                     +  + D ++ + + +   A      V Q+     +E   +   IL E   
Sbjct: 235 AA--------NHQVTDILRDYRDYTXICAGVFDDLVAQLALAHYQEILERNRHILEENLA 286
Query: 152 KCCDRLKEIPCITCPKKPEGSM-FVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGIT 210
                ++E P ++  +    S  FV + ++           +F L+L +E  V+++PG  
Sbjct: 287 ILDQWIEEEPLVSYIRPAVVSTSFVKIAVD-------XPXEDFCLQLLQEHGVLLVPGNR 339
Query: 211 VGLKDWLRITFAVEPSALENGLGRMKAFYDR 241
                ++R+ FA E   L  GL ++  F  R
Sbjct: 340 FERDGYVRLGFACEQETLIKGLEKLSQFLRR 370

>pdb|3AOV|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Kynurenine Aminotransferase In Complex With Plp Length = 448

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 96/211 (45%), Gaps = 25/211 (11%)
Query: 34  ETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVT 93
           E A +   +V+ ++ YG L +   P   +    +   ++ LG+ SK  + PG R+GW+V 
Sbjct: 244 ELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKI-LAPGFRIGWMVG 302
Query: 94  SDPNGILQDSGIVDSIKIFLNISSDPATFIQGAV---PQILEKTEEEFFSKIIDILRETA 150
                   D GI+  ++I    S+D  T + G V     +     E+   +I    +   
Sbjct: 303 --------DPGIIRKMEI-AKQSTDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRR 353
Query: 151 DKCCDRLKE-IPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGI 209
           D   + L+E +P      KPEG MF+ V    +L +GI+S     L+ A ++ V  +PG 
Sbjct: 354 DAMLEALEEFMPEGVKWTKPEGGMFIWV----TLPDGIDSKK--MLERAIKKGVAYVPGE 407
Query: 210 TV----GLKDWLRITFA-VEPSALENGLGRM 235
                  +K+ +R+ F  V+   +  G+ R+
Sbjct: 408 AFYAHRDVKNTMRLNFTYVDEDKIMEGIKRL 438

>pdb|1X0M|A Chain A, A Human Kynurenine Aminotransferase Ii Homologue From Pyrococcus Horikoshii Ot3 Length = 403

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 96/211 (45%), Gaps = 25/211 (11%)
Query: 34  ETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVT 93
           E A +   +V+ ++ YG L +   P   +    +   ++ LG+ SK  + PG R+GW+V 
Sbjct: 199 ELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKI-LAPGFRIGWMVG 257
Query: 94  SDPNGILQDSGIVDSIKIFLNISSDPATFIQGAV---PQILEKTEEEFFSKIIDILRETA 150
                   D GI+  ++I    S+D  T + G V     +     E+   +I    +   
Sbjct: 258 --------DPGIIRKMEI-AKQSTDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRR 308
Query: 151 DKCCDRLKE-IPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGI 209
           D   + L+E +P      KPEG MF+ V    +L +GI+S     L+ A ++ V  +PG 
Sbjct: 309 DAMLEALEEFMPEGVKWTKPEGGMFIWV----TLPDGIDSKK--MLERAIKKGVAYVPGE 362
Query: 210 TV----GLKDWLRITFA-VEPSALENGLGRM 235
                  +K+ +R+ F  V+   +  G+ R+
Sbjct: 363 AFYAHRDVKNTMRLNFTYVDEDKIMEGIKRL 393

>pdb|2Z61|A Chain A, Crystal Structure Of Mj0684 From Methanococcus Jannaschii Reveals Its Similarity In The Active Site To Kynurenine Aminotransferases Length = 370

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 89/202 (44%), Gaps = 20/202 (9%)
Query: 43  VIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQD 102
           +I++E+Y  L +    + ++    ++   + +   S    + G R+G+++++D       
Sbjct: 186 IISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSXLYAMTGWRIGYVISNDE------ 239
Query: 103 SGIVDSI-KIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIP 161
             I+++I K+  N+     T  Q A  +  EK  E   + +I             +K+  
Sbjct: 240 --IIEAILKLQQNLFISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDFG 297
Query: 162 CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRI 219
                  P G+ +V   +            EFA KL KE+ V + PGI  G   K+++RI
Sbjct: 298 WEV--NNPIGAYYVFPNIG-------EDGREFAYKLLKEKFVALTPGIGFGSKGKNYIRI 348
Query: 220 TFAVEPSALENGLGRMKAFYDR 241
           ++A     ++ GL R+K F ++
Sbjct: 349 SYANSYENIKEGLERIKEFLNK 370

>pdb|3ELE|A Chain A, Crystal Structure Of Amino Transferase (rer070207001803) From Eubacterium Rectale At 2.10 A Resolution Length = 398

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/219 (20%), Positives = 93/219 (42%), Gaps = 31/219 (14%)
Query: 32  IAETAKKLG--IMVIANEVYGHLAFG--NTPFVSMGVFGSIVPLLTLGSISKRGIVPGLR 87
           + + +K++G  I +IA+E Y  + +     PFV+     ++V      S SK   +PG R
Sbjct: 201 LEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCY----SYSKSLSLPGER 256
Query: 88  LGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEK--TEEEFFSKIIDI 145
           +G+++  D         + D  +++  +            P + +K   + +  +  I+ 
Sbjct: 257 IGYVLVPDE--------VYDKAELYAAVCGAGRALGYVCAPSLFQKXIVKCQGATGDINA 308
Query: 146 LRETADKCCDRLKEI--PCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESV 203
            +E  D   + L  I   C     KP+G+ +  VK        +  D     + AKEE V
Sbjct: 309 YKENRDLLYEGLTRIGYHCF----KPDGAFYXFVK-------ALEDDSNAFCEKAKEEDV 357
Query: 204 IVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRH 242
           +++     G   W+RI++ V+   +++     +  Y ++
Sbjct: 358 LIVAADGFGCPGWVRISYCVDREXIKHSXPAFEKIYKKY 396

>pdb|1V2D|A Chain A, Crystal Structure Of T.Th Hb8 Glutamine Aminotransferase Length = 381

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 86/214 (40%), Gaps = 36/214 (16%)
Query: 32  IAETAKKLGIMVIANEVYGHLAFGNTP-----FVSMGVFGSIVPLLTLGSISKRGIVPGL 86
           IA  A+   + +I++EVY  L +G  P     F     F       T+GS  KR    G 
Sbjct: 177 IARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTF-------TVGSAGKRLEATGY 229
Query: 87  RLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEE-FFSKIIDI 145
           R+GW+V     G  +    +  ++ + + S+   T +Q  V + L+    E F+  + + 
Sbjct: 230 RVGWIV-----GPKEFMPRLAGMRQWTSFSAP--TPLQAGVAEALKLARREGFYEALREG 282
Query: 146 LRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIV 205
            R   D     L+ +        PEG+ F+M +L      G +     A +L +E  V +
Sbjct: 283 YRRRRDLLAGGLRAMGLRVY--VPEGTYFLMAELP-----GWD-----AFRLVEEARVAL 330
Query: 206 LPGITVGL----KDWLRITFAVEPSALENGLGRM 235
           +P     L    KD  R  F      L   L R+
Sbjct: 331 IPASAFYLEDPPKDLFRFAFCKTEEELHLALERL 364

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	246
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	7e-84
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	7e-79
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	2e-29
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	2e-27
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	3e-26
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	1e-25
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	8e-25
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	3e-24
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	6e-22
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	7e-21
3nra_A	407	Aspartate aminotransferase; structural genomics, j	8e-21
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	3e-20
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	4e-20
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	3e-18
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	4e-18
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	5e-18
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	1e-17
1vp4_A	425	Aminotransferase, putative; structural genomics, j	1e-17
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	2e-17
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	2e-17
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	2e-17
3ele_A	398	Amino transferase; RER070207001803, structural gen	3e-17
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	4e-17
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	7e-17
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	8e-17
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	9e-17
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	1e-16
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	1e-16
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	1e-16
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	2e-16
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	4e-16
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	2e-15
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	3e-15
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	4e-14
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	8e-14
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	1e-13
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	2e-13
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	2e-13
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	8e-13
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	1e-12
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	3e-12
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	3e-12
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	5e-12
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	6e-12
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	1e-11
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	3e-11
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	8e-11
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	3e-10
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	6e-05
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	9e-05
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	4e-04

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* Length = 427

 Score =  255 bits (654), Expect = 7e-84
 Identities = 64/222 (28%), Positives = 110/222 (49%), Gaps = 2/222 (0%)

Query: 21  GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKR 80
           GS FS   +  I   A +  + ++A+E+YG + F +  +  +    + VP+L+ G ++KR
Sbjct: 205 GSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKR 264

Query: 81  GIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFS 140
            +VPG RLGW++  D   I  +  I D +         P T +QGA+  IL +T  EF+ 
Sbjct: 265 WLVPGWRLGWILIHDRRDIFGNE-IRDGLVKLSQRILGPCTIVQGALKSILCRTPGEFYH 323

Query: 141 KIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKE 200
             +  L+  AD C   L  IP +   + P G+M++MV +         +D+EF  +L  E
Sbjct: 324 NTLSFLKSNADLCYGALAAIPGLRPVR-PSGAMYLMVGIEMEHFPEFENDVEFTERLVAE 382

Query: 201 ESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRH 242
           +SV  LP       +++R+   V    +     R++ F ++H
Sbjct: 383 QSVHCLPATCFEYPNFIRVVITVPEVMMLEACSRIQEFCEQH 424

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 Length = 416

 Score =  242 bits (620), Expect = 7e-79
 Identities = 69/227 (30%), Positives = 113/227 (49%), Gaps = 7/227 (3%)

Query: 21  GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFG----NTPFVSMGVFGSIVPLLTLGS 76
           GS FS   V  I   A++L + + ++E+Y  + F     N  F S+  F + VP + LG 
Sbjct: 191 GSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGG 250

Query: 77  ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEE 136
            +K  +VPG RLGWL+  DP+G       ++ +K    +   P T +Q A+ + L  T +
Sbjct: 251 TAKNLVVPGWRLGWLLYVDPHGNGPS--FLEGLKRVGMLVCGPCTVVQAALGEALLNTPQ 308

Query: 137 EFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALK 196
           E   +I+  + E+A    + + E   +     P G+M++M +++      I +D+EF  K
Sbjct: 309 EHLDQIVAKIEESAMYLYNHIGECIGLAPTM-PRGAMYLMSRIDLEKYRDIKTDVEFFEK 367

Query: 197 LAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRHA 243
           L +EE+V VLPG       + R+T           + R+KAF  RHA
Sbjct: 368 LLEEENVQVLPGTIFHAPGFTRLTTTRPVEVYREAVERIKAFCQRHA 414

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 Length = 406

 Score =  113 bits (284), Expect = 2e-29
 Identities = 54/227 (23%), Positives = 94/227 (41%), Gaps = 10/227 (4%)

Query: 21  GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKR 80
           G+ +    +  I   A +  I VI++E+Y  + +     +S G     VP++ +  +SK 
Sbjct: 188 GALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGE-HISPGSLTKDVPVIVMNGLSKV 246

Query: 81  GIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFS 140
               G RLG++   DP   L +  + ++I     I   P T  Q A    L     ++  
Sbjct: 247 YFATGWRLGYMYFVDPENKLSE--VREAIDRLARIRLCPNTPAQFAAIAGL-TGPMDYLK 303

Query: 141 KIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKE 200
           + +  L+E  D    RL EIP I+  K P+G+ ++  K+    +    +D EF L +   
Sbjct: 304 EYMKKLKERRDYIYKRLNEIPGISTTK-PQGAFYIFPKIE---VGPWKNDKEFVLDVLHN 359

Query: 201 ESVIVLPGITVGLK--DWLRITFAVEPSALENGLGRMKAFYDRHAEK 245
             V+ + G   G       R  F      LE  + R + F     ++
Sbjct: 360 AHVLFVHGSGFGEYGAGHFRAVFLPPIEILEEAMDRFEKFMKERLKE 406

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} Length = 498

 Score =  108 bits (272), Expect = 2e-27
 Identities = 53/255 (20%), Positives = 97/255 (38%), Gaps = 37/255 (14%)

Query: 21  GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAF-GNTPFVSM--------GVFGSIVPL 71
           G   S   +  +   A +  + ++A+EVY    +  +  F S           + S V L
Sbjct: 249 GQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVEL 308

Query: 72  LTLGSISK--RGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAV-- 127
            +  S SK   G   G R G++   +         I   +   L++   P    Q A+  
Sbjct: 309 ASFHSTSKGYMGE-CGYRGGYMEVINL-----HPEIKGQLVKLLSVRLCPPVSGQAAMDI 362

Query: 128 ----PQILEKTEEEF---FSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLN 180
               P   E++ E+F      ++  L + A    D   ++P I C    +G+M+   ++ 
Sbjct: 363 VVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCNP-LQGAMYAFPRIF 421

Query: 181 YSLL-------EGINSDMEFALKLAKEESVIVLPGITVGLKDW---LRITFAVEPSALEN 230
                        +  DM + +KL +E  + V+PG   G ++     R+T       L+ 
Sbjct: 422 IPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILPPVEKLKT 481

Query: 231 GLGRMKAFYDRHAEK 245
            L ++K F+    EK
Sbjct: 482 VLQKVKDFHINFLEK 496

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} Length = 500

 Score =  105 bits (263), Expect = 3e-26
 Identities = 46/254 (18%), Positives = 93/254 (36%), Gaps = 36/254 (14%)

Query: 21  GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAF-GNTPFVS-------MGVFGSIVPLL 72
           G   +      I +  K  G++++A+EVY    +  N  F S       +G     +PL+
Sbjct: 251 GQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLV 310

Query: 73  TLGSISK--RGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAV--- 127
           +  S+SK   G   G R G+   +        + + + I    +++       Q      
Sbjct: 311 SYQSVSKGYYG-ECGKRGGYFEITGF-----SAPVREQIYKIASVNLCSNITGQILASLV 364

Query: 128 ---PQILEKTEEEFFSKIIDI---LRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNY 181
              P+  +++   + ++   I   L   A        ++  ITC +  EG+M+V  ++  
Sbjct: 365 MNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLEGITCNE-AEGAMYVFPQICL 423

Query: 182 SLL-------EGINSDMEFALKLAKEESVIVLPGITVGLKDW---LRITFAVEPSALENG 231
                          D  +AL+L +   ++V+PG   G        R T   +   +   
Sbjct: 424 PQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTILPQEDKIPAV 483

Query: 232 LGRMKAFYDRHAEK 245
           + R   F++    +
Sbjct: 484 ISRFTVFHEAFMSE 497

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* Length = 375

 Score =  102 bits (256), Expect = 1e-25
 Identities = 46/230 (20%), Positives = 93/230 (40%), Gaps = 28/230 (12%)

Query: 21  GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPL----LTLGS 76
           G+    +++  + E A ++G  ++++EVY   +  + P        SI+ +    + + S
Sbjct: 168 GAVMDRTYLEELVEIASEVGAYILSDEVYRSFSELDVP--------SIIEVYDKGIAVNS 219

Query: 77  ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSI-KIFLNISSDPATFIQGAVPQILEKTE 135
           +SK   +PG+R+GW+  +          + D +             F        L   +
Sbjct: 220 LSKTYSLPGIRIGWVAANHQ--------VTDILRDYRDYTMICAGVFDDLVAQLALAHYQ 271

Query: 136 EEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFAL 195
           E    +   IL E        ++E P ++  + P       VK+   +        +F L
Sbjct: 272 E-ILERNRHILEENLAILDQWIEEEPLVSYIR-PAVVSTSFVKIAVDM-----PMEDFCL 324

Query: 196 KLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRHAEK 245
           +L +E  V+++PG       ++R+ FA E   L  GL ++  F  R  ++
Sbjct: 325 QLLQEHGVLLVPGNRFERDGYVRLGFACEQETLIKGLEKLSQFLRRFDKE 374

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* Length = 435

 Score =  100 bits (252), Expect = 8e-25
 Identities = 45/238 (18%), Positives = 95/238 (39%), Gaps = 26/238 (10%)

Query: 21  GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKR 80
           G+  + + +  +    +  GI +I++E+Y   AF +  F+S+              + +R
Sbjct: 205 GTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQR 264

Query: 81  GIV----------PGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQI 130
             V          PG R+G + ++D   +         +  F  +SS     +  A+   
Sbjct: 265 VHVVYSLSKDLGLPGFRVGAIYSNDDMVV----AAATKMSSFGLVSS-QTQHLLSAMLSD 319

Query: 131 LEKTEEEFFSKIIDILRETADKCCDRLKE--IPCITCPKKPEGSMFVMVKLNYSLLE-GI 187
            + T + + ++    L++   K    L++  I C+         +F  V + + L     
Sbjct: 320 KKLT-KNYIAENHKRLKQRQKKLVSGLQKSGISCL----NGNAGLFCWVDMRHLLRSNTF 374

Query: 188 NSDMEFALKLAKEESVIVLPGITVGLKD--WLRITFA-VEPSALENGLGRMKAFYDRH 242
            ++ME   K+  E  + + PG +    +  W R+ FA +    L+  + R+KAF   +
Sbjct: 375 EAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDLAMQRLKAFVGEY 432

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* Length = 428

 Score = 99.3 bits (248), Expect = 3e-24
 Identities = 40/241 (16%), Positives = 86/241 (35%), Gaps = 34/241 (14%)

Query: 21  GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISK- 79
           G+      +  +     +  I ++ +E+Y    F    FVS      I+    +   +K 
Sbjct: 202 GTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVS---IAEILDEQEMTYCNKD 258

Query: 80  RGIV----------PGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQ 129
              +          PG R+G + + + + +         +  F  +S+      Q  +  
Sbjct: 259 LVHIVYSLSKDMGLPGFRVGIIYSFNDDVV----NCARKMSSFGLVST----QTQYFLAA 310

Query: 130 ILEKTE--EEFFSKIIDILRETADKCCDRLKE--IPCITCPKKPEGSMFVMVKLNYSLLE 185
           +L   +  + F  +    L +      + L+   I C+    K    +F  + L   L E
Sbjct: 311 MLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVVGIKCL----KNNAGLFCWMDLRPLLRE 366

Query: 186 -GINSDMEFALKLAKEESVIVLPGITVGLKD--WLRITFAV-EPSALENGLGRMKAFYDR 241
              +S+M     +  +  + V PG +   ++  W R+ FA  +   ++  L R++ F   
Sbjct: 367 STFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGTVDIALARIRRFVGV 426

Query: 242 H 242
            
Sbjct: 427 E 427

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 Length = 388

 Score = 92.2 bits (230), Expect = 6e-22
 Identities = 48/227 (21%), Positives = 99/227 (43%), Gaps = 29/227 (12%)

Query: 21  GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVP-----LLTLG 75
           G  ++   V  IA+ A + G+ V+++E+Y  + + +   +S+G   +  P      +   
Sbjct: 177 GMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIG---AASPEAYERSVVCS 233

Query: 76  SISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNI----SSDPATFIQGAVPQIL 131
             +K   + G R+G+L            G V  +K    I    +S+  TF Q       
Sbjct: 234 GFAKTYAMTGWRVGFLA-----------GPVPLVKAATKIQGHSTSNVCTFAQYGAIAAY 282

Query: 132 EKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDM 191
           E   ++   +++    E      D L  +P + CPK P+G+ ++   +     +   S +
Sbjct: 283 E-NSQDCVQEMLAAFAERRRYMLDALNAMPGLECPK-PDGAFYMFPSIA----KTGRSSL 336

Query: 192 EFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAF 238
           +F  +L  +  V  +PG   G  D +R+++A +   ++ G+ R++ F
Sbjct: 337 DFCSELLDQHQVATVPGAAFGADDCIRLSYATDLDTIKRGMERLEKF 383

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 Length = 409

 Score = 89.5 bits (223), Expect = 7e-21
 Identities = 46/238 (19%), Positives = 87/238 (36%), Gaps = 31/238 (13%)

Query: 21  GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVP--LLTLGSIS 78
           G  +    +  + E A++ G+ +I +EVY  + F    F S     SI    ++ + S+S
Sbjct: 188 GVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRG-EFAS---ALSIESDKVVVIDSVS 243

Query: 79  KRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEF 138
           K+    G R+G L+T +         ++            P    Q     +L   ++ F
Sbjct: 244 KKFSACGARVGCLITRNEE-------LISHAMKLAQGRLAPPLLEQIGSVGLL-NLDDSF 295

Query: 139 FSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLA 198
           F  + +  RE  +    +L+E        KP G+ ++  +L       +    EFA  + 
Sbjct: 296 FDFVRETYRERVETVLKKLEEHGLKRFT-KPSGAFYITAEL------PVEDAEEFARWML 348

Query: 199 KE-----ESVIVLPGITVGL-----KDWLRITFAVEPSALENGLGRMKAFYDRHAEKQ 246
            +     E+ +V P     L     K  +RI   +E   L   +  +          +
Sbjct: 349 TDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRAIDVLMEGLKMFCSSR 406

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} Length = 407

 Score = 89.2 bits (222), Expect = 8e-21
 Identities = 41/233 (17%), Positives = 77/233 (33%), Gaps = 31/233 (13%)

Query: 21  GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLL-----TLG 75
           G  +S   +  IA  A + G  VIA+++Y  L +    +       +   +      T+ 
Sbjct: 193 GVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTH---LRAEAAVDAENVVTIM 249

Query: 76  SISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNI----SSDPATFIQGAVPQIL 131
             SK   + G RLG              G    I     +    S   A + Q  +    
Sbjct: 250 GPSKTESLSGYRLGVAF-----------GSRAIIARMEKLQAIVSLRAAGYSQAVLRGWF 298

Query: 132 EKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDM 191
           ++    +    I   +   D+    L+    +     P+   ++       L +   +  
Sbjct: 299 DEA-PGWMEDRIARHQAIRDELLHVLRGCEGVFAR-TPQAGSYLFP----RLPKLAVAPA 352

Query: 192 EFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKAFYDRH 242
           EF   L  +  V+V PG        D +R+ F+ +  A      R+    +R+
Sbjct: 353 EFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQDHEAAVAAARRIVTLVERY 405

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} Length = 444

 Score = 87.8 bits (218), Expect = 3e-20
 Identities = 37/231 (16%), Positives = 90/231 (38%), Gaps = 33/231 (14%)

Query: 32  IAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91
           +AE AK+  I +I +  YG          +   + +    +   S+SK G +PG+R G +
Sbjct: 231 LAEIAKRYDIPLIIDNAYGMPFPNIIYSDAHLNWDNNT--ILCFSLSKIG-LPGMRTGII 287

Query: 92  VTSDPNGILQDSGIVDSI-KIFLNISSDPATFIQGAVPQILEK--TEEEFFSKIIDILRE 148
           V            +++++  +   ++  P  F       ++     ++   ++I    ++
Sbjct: 288 VADAK--------VIEAVSAMNAVVNLAPTRFGAAIATPLVANDRIKQLSDNEIKPFYQK 339

Query: 149 TADKCCDRLKEIPC---ITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIV 205
            A      LK+      +    KPEG++F+ +       +   S ++   +  K +  ++
Sbjct: 340 QATLAVKLLKQALGDYPLMIH-KPEGAIFLWLWFK----DLPISTLDLY-ERLKAKGTLI 393

Query: 206 LPG----ITVGLKDW------LRITFAVEPSALENGLGRMKAFYDRHAEKQ 246
           +P       V + D+      +R++ A +   L +G+  +        + +
Sbjct: 394 VPSEYFFPGVDVSDYQHAHECIRMSIAADEQTLIDGIKVIGEVVRELYDNK 444

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} Length = 411

 Score = 87.3 bits (217), Expect = 4e-20
 Identities = 50/234 (21%), Positives = 85/234 (36%), Gaps = 39/234 (16%)

Query: 31  PIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLL-----TLGSISKRGIVPG 85
            IAE A    ++VI +EVY HL F +   + +  F      +     T+ S +K     G
Sbjct: 184 AIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGF----DGMAERTITISSAAKMFNCTG 239

Query: 86  LRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDI 145
            ++GW     P  ++     V + K +L+         Q AV   L+  E+ + + + + 
Sbjct: 240 WKIGWACG--PAELIAG---VRAAKQYLSYVG--GAPFQPAVALALDT-EDAWVAALRNS 291

Query: 146 LRETADKCCDRLKEI--PCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESV 203
           LR   D+    L EI            G+ F+    +   L G +   EF   L ++  V
Sbjct: 292 LRARRDRLAAGLTEIGFAVH----DSYGTYFLCA--DPRPL-GYDDSTEFCAALPEKVGV 344

Query: 204 IVLPG-------------ITVGLKDWLRITFAVEPSALENGLGRMKAFYDRHAE 244
             +P                      +R TF      L+  + R+    +R A 
Sbjct: 345 AAIPMSAFCDPAAGQASQQADVWNHLVRFTFCKRDDTLDEAIRRLSVLAERPAT 398

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 Length = 386

 Score = 81.9 bits (203), Expect = 3e-18
 Identities = 50/218 (22%), Positives = 85/218 (38%), Gaps = 30/218 (13%)

Query: 32  IAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLL-----TLGSISKRGIVPGL 86
           + +      I VI++EVY H+ F      S+       P L      + S  K   + G 
Sbjct: 188 LWQAIAGHEIFVISDEVYEHINFSQQGHASVLAH----PQLRERAVAVSSFGKTYHMTGW 243

Query: 87  RLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDIL 146
           ++G+ V   P  I  +   +  +  +L  S    T  Q A+  +L   E E +  + D  
Sbjct: 244 KVGYCVA--PAPISAE---IRKVHQYLTFSV--NTPAQLALADMLRA-EPEHYLALPDFY 295

Query: 147 RETADKCCDRLKEI--PCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVI 204
           R+  D   + L E     +      EG+ F++V  +YS +     D+EF   L +E  V 
Sbjct: 296 RQKRDILVNALNESRLEIL----PCEGTYFLLV--DYSAV-STLDDVEFCQWLTQEHGVA 348

Query: 205 VLPGITVGL----KDWLRITFAVEPSALENGLGRMKAF 238
            +P             +R+ FA + S L     R++  
Sbjct: 349 AIPLSVFCADPFPHKLIRLCFAKKESTLLAAAERLRQL 386

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} Length = 370

 Score = 81.4 bits (202), Expect = 4e-18
 Identities = 52/222 (23%), Positives = 94/222 (42%), Gaps = 23/222 (10%)

Query: 25  SGSFVSP-IAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVP-LLTLGSISKRGI 82
            G  +   I E A +    +I++E+Y  L +      S   F   +   + +   SK   
Sbjct: 167 LGEVIDREIYEFAYENIPYIISDEIYNGLVYEG-KCYSAIEFDENLEKTILINGFSKLYA 225

Query: 83  VPGLRLGWLVTSDPNGILQDSGIVDSI-KIFLNISSDPATFIQGAVPQILEKTEEEFFSK 141
           + G R+G+++++D         I+++I K+  N+     T  Q A  +  EK  E   + 
Sbjct: 226 MTGWRIGYVISNDE--------IIEAILKLQQNLFISAPTISQYAALKAFEKETEREINS 277

Query: 142 IIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEE 201
           +I             +K+         P G+ +V   +            EFA KL KE+
Sbjct: 278 MIKEFDRRRRLVLKYVKDFG-WEVN-NPIGAYYVFPNIG-------EDGREFAYKLLKEK 328

Query: 202 SVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKAFYDR 241
            V + PGI  G   K+++RI++A     ++ GL R+K F ++
Sbjct: 329 FVALTPGIGFGSKGKNYIRISYANSYENIKEGLERIKEFLNK 370

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} Length = 407

 Score = 81.1 bits (201), Expect = 5e-18
 Identities = 43/214 (20%), Positives = 84/214 (39%), Gaps = 26/214 (12%)

Query: 32  IAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91
           + E A K  +++I +  Y  + +     V +    +   ++  G++SK  +  G R+GW+
Sbjct: 200 LLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSKV-LGTGFRIGWI 258

Query: 92  VTSDPNGILQDSGIVDSIKIFLNISSD--PATFIQGAVPQILEKT--EEEFFSKIIDILR 147
           +            I+  + +      D       Q    + L++   E+      +   +
Sbjct: 259 IAEGE--------ILKKV-LMQKQPIDFCAPAISQYIALEYLKRGYFEKYHLEGALLGYK 309

Query: 148 ETADKCCDRL-KEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVL 206
           E  D     L   +P      KP   MFVM  L     EG +  + FA +L + E V+V+
Sbjct: 310 EKRDIMLKALENHLPNAEF-TKPIAGMFVMFFLP----EGADG-ISFANELMEREGVVVV 363

Query: 207 PG----ITVGLKDWLRITFA-VEPSALENGLGRM 235
           PG         K+ +R+ F+      +  G+ ++
Sbjct: 364 PGKPFYTDESGKNAIRLNFSRPSKEEIPIGIKKL 397

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* Length = 397

 Score = 80.3 bits (199), Expect = 1e-17
 Identities = 47/215 (21%), Positives = 95/215 (44%), Gaps = 27/215 (12%)

Query: 32  IAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVF---GSIVPLLTLGSISKRGIVPGLRL 88
           + +   + G++V+ ++ Y  L FG     S+           ++ LGS SK  + PGLR+
Sbjct: 188 LLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKV-LSPGLRV 246

Query: 89  GWLVTSDPNGILQDSGIVDSIKIFLNISSD--PATFIQGAVPQILEKTEEEFFSKIIDIL 146
            + V             +  + +     +D       Q  V ++L++   E   ++  + 
Sbjct: 247 AFAVAHPE--------ALQKL-VQAKQGADLHTPMLNQMLVHELLKEGFSERLERVRRVY 297

Query: 147 RETADKCCDRL-KEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIV 205
           RE A      L +E+P      +P+G MFV ++L     +G+++      + A EE+V  
Sbjct: 298 REKAQAMLHALDREVPKEVRYTRPKGGMFVWMELP----KGLSA-EGL-FRRALEENVAF 351

Query: 206 LPG----ITVGLKDWLRITFA-VEPSALENGLGRM 235
           +PG       G ++ LR+++A ++   +  G+ R+
Sbjct: 352 VPGGPFFANGGGENTLRLSYATLDREGIAEGVRRL 386

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 Length = 425

 Score = 80.4 bits (199), Expect = 1e-17
 Identities = 45/227 (19%), Positives = 91/227 (40%), Gaps = 29/227 (12%)

Query: 32  IAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91
           + E A+K  + ++ ++ YG L +       +   G    ++ L + SK  + PGLR+G +
Sbjct: 213 LVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKV-LAPGLRIGMV 271

Query: 92  VTSDPNGILQDSGIVDSIKIFLNISSD--PATFIQGAVPQILEKTE-EEFFSKIIDILRE 148
             S           +  I +    S+D            + LE+ +  E     I++ R 
Sbjct: 272 AGSKE--------FIRKI-VQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRR 322

Query: 149 TADKCCDRLKE----IPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVI 204
                 + L+E    IP +    K EG +F+ + L     EG ++  E   + AK + V 
Sbjct: 323 KRTVMLNALEEYFSDIPGVKW-VKSEGGLFIWLTLP----EGFDT-WEM-FEYAKRKKVF 375

Query: 205 VLPG----ITVGLKDWLRITFA-VEPSALENGLGRMKAFYDRHAEKQ 246
            +PG    +       +R++F       +  G+ R++     + +++
Sbjct: 376 YVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKRLREVVLEYGKEK 422

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* Length = 389

 Score = 79.5 bits (197), Expect = 2e-17
 Identities = 46/227 (20%), Positives = 97/227 (42%), Gaps = 19/227 (8%)

Query: 21  GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPL-LTLGSISK 79
           G+  +   +  IA+   +  ++VI++EVY H  + +    S+     +    +T+   SK
Sbjct: 174 GAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSK 233

Query: 80  RGIVPGLRLGWLVTSDPNGILQDSGIVDSI-KIFLNISSDPATFIQ-GAVPQILEKTEEE 137
              + G RLG++             I++ + K  +  ++ P TFIQ  A   + ++   +
Sbjct: 234 TFAMTGWRLGFVAAPSW--------IIERMVKFQMYNATCPVTFIQYAAAKALKDERSWK 285

Query: 138 FFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKL 197
              ++             RL E+  +    KP+G+ ++  ++     +   +  +F+  +
Sbjct: 286 AVEEMRKEYDRRRKLVWKRLNEMG-LPTV-KPKGAFYIFPRIR----DTGLTSKKFSELM 339

Query: 198 AKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKAFYDRH 242
            KE  V V+PG   G   + ++RI++A     LE  + RM+      
Sbjct: 340 LKEARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAMDRMERVLKER 386

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 Length = 389

 Score = 79.5 bits (197), Expect = 2e-17
 Identities = 47/223 (21%), Positives = 90/223 (40%), Gaps = 30/223 (13%)

Query: 21  GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPL-LTLGSISK 79
           G  +   F+  +   AKK    +I++EVY  L + +  F S+          + +   SK
Sbjct: 188 GVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTD-EFTSILDVSEGFDRIVYINGFSK 246

Query: 80  RGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNI----SSDPATFIQGAVPQILEKTE 135
              + G R+G+L+                      I    +S   T  Q A  + LE   
Sbjct: 247 SHSMTGWRVGYLI-----------SSEKVATAVSKIQSHTTSCINTVAQYAALKALEVDN 295

Query: 136 EEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFAL 195
                 ++   +E  +   +RLK++  +   + PEG+ ++  K+          D++F  
Sbjct: 296 SY----MVQTFKERKNFVVERLKKMG-VKFVE-PEGAFYLFFKVR-------GDDVKFCE 342

Query: 196 KLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAF 238
           +L +E+ V ++PG       ++R++FA     L   L R++ F
Sbjct: 343 RLLEEKKVALVPGSAFLKPGFVRLSFATSIERLTEALDRIEDF 385

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} Length = 391

 Score = 79.1 bits (196), Expect = 2e-17
 Identities = 43/226 (19%), Positives = 84/226 (37%), Gaps = 34/226 (15%)

Query: 31  PIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGW 90
            + E A+  G   I++E+Y  + +      ++ +         + S SK   + G R+GW
Sbjct: 185 ALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDECY---VINSFSKYFSMTGWRVGW 241

Query: 91  LVTSDPNGILQDSGIVDSI-KIFLNISSDPATFIQ-GAV-----PQILEKTEEEFFSKII 143
           +V  +          V  + +I  N+        Q  A+        L+   + +     
Sbjct: 242 MVVPED--------QVRVVERIAQNMFICAPHASQVAALAALDCDAELQANLDVY----- 288

Query: 144 DILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESV 203
              +       +RL +         P+G+ +V    + S L   +    FA ++ ++  V
Sbjct: 289 ---KANRKLMLERLPKAGFTRIA-PPDGAFYVYA--DVSDL--TDDSRAFAAEILEKAGV 340

Query: 204 IVLPGI---TVGLKDWLRITFAVEPSALENGLGRMKAFYDRHAEKQ 246
            V PG+          LR ++A   + +E GL R++AF     E  
Sbjct: 341 AVTPGLDFDPERGAGTLRFSYARATADIEEGLDRLEAFMQARGEGH 386

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} Length = 398

 Score = 79.1 bits (196), Expect = 3e-17
 Identities = 41/237 (17%), Positives = 89/237 (37%), Gaps = 41/237 (17%)

Query: 21  GSGFSGSFVSPIAETAKK------LGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLL-- 72
           G+ +S   +  +++  +K        I +IA+E Y  + +              V     
Sbjct: 186 GTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKV-------PFVTKYYD 238

Query: 73  ---TLGSISKRGIVPGLRLGWLVTSDP--NGILQDSGIVDSIKIFLNISSDPATFIQGAV 127
                 S SK   +PG R+G+++  D   +     + +  + +    +     +  Q  +
Sbjct: 239 NTLVCYSYSKSLSLPGERIGYVLVPDEVYDKAELYAAVCGAGRALGYVC--APSLFQKMI 296

Query: 128 PQILEKTE--EEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLE 185
            +    T     +        +E  D   + L  I    C K P+G+ ++ VK       
Sbjct: 297 VKCQGATGDINAY--------KENRDLLYEGLTRIG-YHCFK-PDGAFYMFVKAL----- 341

Query: 186 GINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRH 242
             +    F  + AKEE V+++     G   W+RI++ V+   +++ +   +  Y ++
Sbjct: 342 -EDDSNAFC-EKAKEEDVLIVAADGFGCPGWVRISYCVDREMIKHSMPAFEKIYKKY 396

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* Length = 448

 Score = 78.8 bits (195), Expect = 4e-17
 Identities = 49/213 (23%), Positives = 92/213 (43%), Gaps = 25/213 (11%)

Query: 32  IAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91
           + E A +   +V+ ++ YG L +   P   +    +   ++ LG+ SK  + PG R+GW+
Sbjct: 242 LLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKI-LAPGFRIGWM 300

Query: 92  VTSDPNGILQDSGIVDSIKIFLNISSD--PATFIQGAVPQILEKTE-EEFFSKIIDILRE 148
           V            I+  +      S+D     F Q    + ++    E+   +I    + 
Sbjct: 301 VGDPG--------IIRKM-EIAKQSTDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKP 351

Query: 149 TADKCCDRL-KEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLP 207
             D   + L + +P      KPEG MF+ V L     +GI+S  +  L+ A ++ V  +P
Sbjct: 352 RRDAMLEALEEFMPEGVKWTKPEGGMFIWVTLP----DGIDS-KKM-LERAIKKGVAYVP 405

Query: 208 G----ITVGLKDWLRITFA-VEPSALENGLGRM 235
           G        +K+ +R+ F  V+   +  G+ R+
Sbjct: 406 GEAFYAHRDVKNTMRLNFTYVDEDKIMEGIKRL 438

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} Length = 417

 Score = 78.1 bits (193), Expect = 7e-17
 Identities = 34/227 (14%), Positives = 75/227 (33%), Gaps = 42/227 (18%)

Query: 32  IAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVF---GSIVPLLTLGSISKRGIVPGLRL 88
           +   A +  I ++ +  YG   F    F           I+      S+SK G +PG R 
Sbjct: 205 LDRLANQHNIPLVIDNAYGVP-FPGIIFSEARPLWNPNIIL----CMSLSKLG-LPGSRC 258

Query: 89  GWLVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILR 147
           G ++ +D          + +I      IS  P       + ++++    +       +++
Sbjct: 259 GIIIANDK--------TITAIANMNGIISLAPGGMGPAMMCEMIK--RNDLLRLSETVIK 308

Query: 148 ET----ADKCCDRLKE---IPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKE 200
                   +    ++            KPEG++F+ +       +   +      +  K 
Sbjct: 309 PFYYQRVQQTIAIIRRYLSEERCLIH-KPEGAIFLWLWFK----DLPITTELLY-QRLKA 362

Query: 201 ESVIVLPG---------ITVGLKDWLRITFAVEPSALENGLGRMKAF 238
             V+++PG                 +R+ +  EP  +E G+  +   
Sbjct: 363 RGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVPEPDKIEAGVKILAEE 409

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* Length = 425

 Score = 78.1 bits (193), Expect = 8e-17
 Identities = 51/224 (22%), Positives = 87/224 (38%), Gaps = 42/224 (18%)

Query: 32  IAETAKKLGIMVIANEVYGHLAFGNT---PFVSMGVFGSIVPLLTLGSISKRGIVPGLRL 88
           I E A+K   ++I ++ Y  L F       F+SM V G ++      S SK  I  GLR+
Sbjct: 216 IYELARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVI---RADSFSKI-ISSGLRI 271

Query: 89  GWLVTSDPNGILQDSGIVDSIKIFLNISSD--PATFIQGAVPQILEKTEEEFF----SKI 142
           G+L    P        +++ + I     S   P+TF Q  + Q+L +  EE F     ++
Sbjct: 272 GFLTGPKP--------LIERV-ILHIQVSTLHPSTFNQLMISQLLHEWGEEGFMAHVDRV 322

Query: 143 IDILRETADKCCDRLKEIPCITCPK-----KPEGSMFVMVKLNYSLLEGINSDMEFALKL 197
           ID      D       +              P   MF+ +K+        +   E   + 
Sbjct: 323 IDFYSNQKDAILAAADK----WLTGLAEWHVPAAGMFLWIKVK----GINDV-KELIEEK 373

Query: 198 AKEESVIVLPGI-----TVGLKDWLRITFA-VEPSALENGLGRM 235
           A +  V++LPG      +     +LR +F+   P  ++     +
Sbjct: 374 AVKMGVLMLPGNAFYVDSSAPSPYLRASFSSASPEQMDVAFQVL 417

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} PDB: 2zjg_A* 3e2f_A* 3e2z_A* Length = 410

 Score = 77.7 bits (192), Expect = 9e-17
 Identities = 44/233 (18%), Positives = 86/233 (36%), Gaps = 41/233 (17%)

Query: 32  IAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLL-----TLGSISKRGIVPGL 86
           IA+   K   + I++EVY  L +     V +       P +     T+GS  K   V G 
Sbjct: 192 IADLCVKHDTLCISDEVYEWLVYTGHTHVKIATL----PGMWERTITIGSAGKTFSVTGW 247

Query: 87  RLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILE------KTEEEFFS 140
           +LGW +   P  +++    + +++     +   AT +Q A+ +            E +F+
Sbjct: 248 KLGWSIG--PAHLIKH---LQTVQQNSFYTC--ATPLQAALAEAFWIDIKRMDDPECYFN 300

Query: 141 KIIDILRETADKCCDRLKEI--PCITCPKKPEGSMFVMV---KLNYSLLEGINS---DME 192
            +   L    D+    L  +    I     P+G  F++     L   L +  +    D +
Sbjct: 301 SLPKELEVKRDRMVRLLNSVGLKPI----VPDGGYFIIADVSSLGADLSDMNSDEPYDYK 356

Query: 193 FALKLAKEESVIVLPG-------ITVGLKDWLRITFAVEPSALENGLGRMKAF 238
           F   + K + +  +P             +  +R  F  + S L+      +A+
Sbjct: 357 FVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFIKKDSTLDAAEEIFRAW 409

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* Length = 429

 Score = 77.7 bits (192), Expect = 1e-16
 Identities = 42/234 (17%), Positives = 84/234 (35%), Gaps = 42/234 (17%)

Query: 32  IAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLL-----TLGSISKRGIVPGL 86
           +A   KK  ++ +++EVY H+ F     + +       P +     T+GS  K   + G 
Sbjct: 207 VANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTL----PGMWERTITIGSAGKTFSLTGW 262

Query: 87  RLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEE------EFFS 140
           ++GW     P  +L++   +  +      +   AT IQ A+    E   +       +F+
Sbjct: 263 KIGWAYG--PEALLKN---LQMVHQNCVYTC--ATPIQEAIAVGFETELKRLKSPECYFN 315

Query: 141 KIIDILRETADKCCDRLKEI--PCITCPKKPEGSMFVMV-------KLNYSLLEGINSDM 191
            I   L    D     L E+          P+G  F++        K++ +       D 
Sbjct: 316 SISGELMAKRDYMASFLAEVGMNPT----VPQGGYFMVADWSSLDSKVDLTQETDARKDY 371

Query: 192 EFALKLAKEESVIVLPG-------ITVGLKDWLRITFAVEPSALENGLGRMKAF 238
            F   + K   +  +P             +D++R  F  +   L+     ++ +
Sbjct: 372 RFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFKKDENLQKAAEILRKW 425

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* Length = 385

 Score = 77.2 bits (191), Expect = 1e-16
 Identities = 45/226 (19%), Positives = 86/226 (38%), Gaps = 30/226 (13%)

Query: 21  GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVP--LLTLGSIS 78
           G+ +    +  +A  A +    ++++E+Y HL +    F S G    + P   LT+   +
Sbjct: 178 GAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHF-SPG---RVAPEHTLTVNGAA 233

Query: 79  KRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNI----SSDPATFIQGAVPQILEKT 134
           K   + G R+G+             G  + IK   ++    ++ P T  Q A  + L   
Sbjct: 234 KAFAMTGWRIGYAC-----------GPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQ 282

Query: 135 EE--EFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDME 192
           E    F     +  R   D   + L  +  +   + P G+ +V++  +         ++ 
Sbjct: 283 EASRAFVEMAREAYRRRRDLLLEGLTALG-LKAVR-PSGAFYVLMDTS----PIAPDEVR 336

Query: 193 FALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAF 238
            A +L  E  V V+PG        +R+++A     L   L R    
Sbjct: 337 AAERL-LEAGVAVVPGTDFAAFGHVRLSYATSEENLRKALERFARV 381

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} Length = 437

 Score = 77.4 bits (191), Expect = 1e-16
 Identities = 31/248 (12%), Positives = 64/248 (25%), Gaps = 34/248 (13%)

Query: 21  GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPL-------LT 73
               +   +  I E A K  ++VI +  Y  + F    +   G       +       + 
Sbjct: 196 WQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRK-DYSHPGEPLYQPSVANYTDNYIL 254

Query: 74  LGSISKRGIVPGLRLGWLVTSDP----------NGILQDSGIVDSIKIFL-NISSDPATF 122
             S SK     G R+G L+ S                +           L  +SS     
Sbjct: 255 ALSSSKAFSYAGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHS 314

Query: 123 IQGAVPQILEKTEE--EFFSKIIDILRETADKCCDRLKE-----IPCITCPKKPEGSMFV 175
            Q  +  +L+   +    F   +      A        +     +       +P    F 
Sbjct: 315 AQWGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDNGFNIVYDKDGN-EPLADGFY 373

Query: 176 MVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKD--WLRITFAVEPSALENGLG 233
                +++        +   K  +     +    T   ++      T  +  S   +   
Sbjct: 374 -----FTVGYKGMDSSKLIEKFVRYGMCAITLKTTGSKRNEAMRICTSLLPESQFPDLEK 428

Query: 234 RMKAFYDR 241
           R++     
Sbjct: 429 RLQMLNAE 436

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} Length = 447

 Score = 77.0 bits (190), Expect = 2e-16
 Identities = 43/234 (18%), Positives = 82/234 (35%), Gaps = 37/234 (15%)

Query: 32  IAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLL-----TLGSISKRGIVPGL 86
           +     K  +++I++EVY HL F ++         ++ P +     T+GS  K     G 
Sbjct: 226 LGNICVKHNVVIISDEVYEHLYFTDSFTRIA----TLSPEIGQLTLTVGSAGKSFAATGW 281

Query: 87  RLGWLVTSDPNGILQDSGIVDSI-KIFLNISSDPATFIQGAVPQILEKTEEE-FFSKIID 144
           R+GW+++ +         ++    K    I     + +Q A    +    +  +F K+  
Sbjct: 282 RIGWVLSLNAE-------LLSYAAKAHTRICFASPSPLQEACANSINDALKIGYFEKMRQ 334

Query: 145 ILRETADKCCDRLKEIPCITCPKKPEGSMFVMV----------KLNYSLLEGINSDMEFA 194
                         E+  +     PEG+ FV+V                +     D   +
Sbjct: 335 EYINKFKIFTSIFDELG-LPYT-APEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRIS 392

Query: 195 LKLAKEESVIVLPGI-------TVGLKDWLRITFAVEPSALENGLGRMKAFYDR 241
             L  E  V+ +P             ++ LR     + + LEN + R+K   D 
Sbjct: 393 HWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVCKDDAYLENAVERLKLLKDY 446

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* Length = 427

 Score = 76.1 bits (187), Expect = 4e-16
 Identities = 22/218 (10%), Positives = 64/218 (29%), Gaps = 32/218 (14%)

Query: 41  IMVIANEVYGHLAFGN--TPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNG 98
           ++     +Y  + +    TP             + L ++SK     G R GW +  D + 
Sbjct: 216 VIKGCKSIYDMVYYWPHYTPIKYKAD-----EDILLFTMSKFTGHSGSRFGWALIKDES- 269

Query: 99  ILQDSGIVDSI-KIFLNISSDPATFIQGAVPQILEKTEE----------EFFSKIIDILR 147
                 + +++       +       Q    ++L++             +  +     LR
Sbjct: 270 ------VYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLR 323

Query: 148 ETADKCCDRLKEIPCITCPKKPEGSMFVMVKLN------YSLLEGINSDMEFALKLAKEE 201
           E        L +    +  + P+       +        Y+ ++    + +   +  +  
Sbjct: 324 ERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNG 383

Query: 202 SVIVLPGITVGL-KDWLRITFAVEPSALENGLGRMKAF 238
            +    G+       ++R++        +  +  +K  
Sbjct: 384 RINTQNGVGFEASSRYVRLSLIKTQDDFDQLMYYLKDM 421

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* Length = 422

 Score = 73.9 bits (182), Expect = 2e-15
 Identities = 39/235 (16%), Positives = 87/235 (37%), Gaps = 43/235 (18%)

Query: 32  IAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLL-----TLGSISKRGIVPGL 86
           +A   ++  ++ I +EVY  + +     +S+       P +     T+GS  K     G 
Sbjct: 199 VASLCQQHDVVCITDEVYQWMVYDGHQHISIASL----PGMWERTLTIGSAGKTFSATGW 254

Query: 87  RLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTE------EEFFS 140
           ++GW++   P+ I++    + ++           T  Q AV +  E+ +        +F 
Sbjct: 255 KVGWVLG--PDHIMKH---LRTVHQNSVFHC--PTQSQAAVAESFEREQLLFRQPSSYFV 307

Query: 141 KIIDILRETADKCCDRLKEI--PCITCPKKPEGSMFVMV-----KLNYSLLEGINS---D 190
           +    ++   D     L+ +    I     P+GS F++      K     L G      D
Sbjct: 308 QFPQAMQRCRDHMIRSLQSVGLKPI----IPQGSYFLITDISDFKRKMPDLPGAVDEPYD 363

Query: 191 MEFALKLAKEESVIVLPG-------ITVGLKDWLRITFAVEPSALENGLGRMKAF 238
             F   + K + ++ +P               ++R  F  + + L+    +++ +
Sbjct: 364 RRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEATLQAMDEKLRKW 418

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* Length = 381

 Score = 73.0 bits (180), Expect = 3e-15
 Identities = 49/228 (21%), Positives = 83/228 (36%), Gaps = 42/228 (18%)

Query: 32  IAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLL-----TLGSISKRGIVPGL 86
           IA  A+   + +I++EVY  L +G  P                   T+GS  KR    G 
Sbjct: 177 IARLARAHDLFLISDEVYDELYYGERPRRLR-------EFAPERTFTVGSAGKRLEATGY 229

Query: 87  RLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEK-TEEEFFSKIIDI 145
           R+GW+V   P   +     +  ++ + + S+   T +Q  V + L+    E F+  + + 
Sbjct: 230 RVGWIVG--PKEFMPR---LAGMRQWTSFSA--PTPLQAGVAEALKLARREGFYEALREG 282

Query: 146 LRETADKCCDRLKEI--PCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESV 203
            R   D     L+ +          PEG+ F+M                 A +L +E  V
Sbjct: 283 YRRRRDLLAGGLRAMGLRVY----VPEGTYFLMA--ELPGW--------DAFRLVEEARV 328

Query: 204 IVLPGITV-----GLKDWLRITFAVEPSALENGLGRMKAFYDRHAEKQ 246
            ++P  +        KD  R  F      L   L R+    +   E +
Sbjct: 329 ALIPA-SAFYLEDPPKDLFRFAFCKTEEELHLALERLGRVVNSPREAE 375

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} Length = 376

 Score = 69.9 bits (172), Expect = 4e-14
 Identities = 39/225 (17%), Positives = 74/225 (32%), Gaps = 40/225 (17%)

Query: 32  IAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVP-----LLTLGSISKRGIVPGL 86
             + A K   ++I +E Y  +     P   +             +L + S+SKR   PGL
Sbjct: 179 WVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGL 238

Query: 87  RLGWLVTSDPNGILQDSGIVDSIKIFLNISS--DPATF--IQGAVPQILEKTEEEFFSKI 142
           R G++   D             ++ +    +     +   IQ A        ++      
Sbjct: 239 RSGFIA-GDS----------RLLEKYKAFRAYLGYTSANAIQKASEAAW--LDDRHAEFF 285

Query: 143 IDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEES 202
            +I            K             S +V +         + +   FA  L + E 
Sbjct: 286 RNIYANNLKLARKIFKNTL------IYPYSFYVYLP--------VQNGENFAKTLYQNEG 331

Query: 203 VIVLPGITVGL----KDWLRITFAVEPSALENGLGRMKAFYDRHA 243
           +I LP + +G      D++R+    +   LE  L  ++ + + HA
Sbjct: 332 IITLPALYLGRNRIGADYVRLALVYDTPLLEKPLEIIETYRENHA 376

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} Length = 412

 Score = 69.2 bits (170), Expect = 8e-14
 Identities = 47/229 (20%), Positives = 85/229 (37%), Gaps = 33/229 (14%)

Query: 27  SFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSM---------GVFGSIVPLLTLGSI 77
            F   +   AK+  +MV+ +  Y  + +      S+          V           ++
Sbjct: 192 DFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAV--------EFFTL 243

Query: 78  SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSI-KIFLNISSDPATFIQGAVPQILEKTEE 136
           SK   + G R+G++V     G   +  +V ++ +I         T +Q A    L + ++
Sbjct: 244 SKSYNMAGWRIGFMV-----G---NPELVSALARIKSYHDYGTFTPLQVAAIAAL-EGDQ 294

Query: 137 EFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALK 196
           +    I    ++  D     L+E         P+ SM+V  K+       + S +EFA K
Sbjct: 295 QCVRDIARQYQQRRDVLVKGLREAGW-MVE-NPKASMYVWAKIP-EPYAHLGS-LEFAKK 350

Query: 197 LAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKAFYDRHA 243
           L ++  V V PGI  G    D +R         L   +  +KA +    
Sbjct: 351 LLQDAKVSVSPGIGFGDYGDDHVRFALIENRDRLRQAVRGIKAMFRADG 399

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} Length = 427

 Score = 68.6 bits (168), Expect = 1e-13
 Identities = 35/231 (15%), Positives = 63/231 (27%), Gaps = 38/231 (16%)

Query: 36  AKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPL------LTLGSISKRGIV-PGLRL 88
                  V+ +  Y      +     + + G               S SK  I   G  +
Sbjct: 211 TAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSK--ITLAGAGV 268

Query: 89  GWLVTSDPNGILQDSGIVDSIKIFLNISS-DPATFIQGAVPQILEKTE--EEFFSKIIDI 145
            + +TS  N                 I    P    Q A  +     E       K    
Sbjct: 269 SFFLTSAEN--------RKWYTGHAGIRGIGPNKVNQLAHARYFGDAEGVRAVMRKHAAS 320

Query: 146 LRETADKCCDRL-KEIPCITCPK--KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEES 202
           L    +K  + L   +      +   P G  F+ +     ++ G  S +    +LAKE  
Sbjct: 321 LAPKFNKVLEILDSRLAEYGVAQWTVPAGGYFISLD----VVPGTASRV---AELAKEAG 373

Query: 203 VIVLPG-----ITVGLKDW-LRITFA-VEPSALENGLGRM-KAFYDRHAEK 245
           + +        +    ++  LR+  +      LE  +  +        AE 
Sbjct: 374 IALTGAGSSYPLRQDPENKNLRLAPSLPPVEELEVAMDGVATCVLLAAAEH 424

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} Length = 423

 Score = 68.2 bits (167), Expect = 2e-13
 Identities = 32/228 (14%), Positives = 61/228 (26%), Gaps = 42/228 (18%)

Query: 32  IAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVP-------LLTLGSISKRGIV- 83
               A      + A++ Y               F  +              S SK  I  
Sbjct: 199 AGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSK--ITF 256

Query: 84  PGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSD--PATFIQGAVPQILEKTE---EEF 138
            G  LG++ +S+ N        +  +  +L  +    P    Q    + L +     E  
Sbjct: 257 AGAGLGFVASSEDN--------IRWLSKYLG-AQSIGPNKVEQARHVKFLTEYPGGLEGL 307

Query: 139 FSKIIDILRETADKCCD----RLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFA 194
                 I+        +     L E         P+G  F+ +       E +   +   
Sbjct: 308 MRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKGGYFISLD----TAEPVADRV--- 360

Query: 195 LKLAKEESVIVLPG-----ITVGLKDW-LRITFA-VEPSALENGLGRM 235
           +KLA+   V + P            +  LR+         +   +  +
Sbjct: 361 VKLAEAAGVSLTPAGATYPAGQDPHNRNLRLAPTRPPVEEVRTAMQVV 408

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} Length = 422

 Score = 67.8 bits (166), Expect = 2e-13
 Identities = 32/226 (14%), Positives = 64/226 (28%), Gaps = 42/226 (18%)

Query: 32  IAETAKK-LGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPL------LTLGSISKRGIV- 83
           +AE +       ++ +  Y      +   +   V               + S SK  I  
Sbjct: 204 LAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSK--ITH 261

Query: 84  PGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSD--PATFIQGAVPQILEKTE--EEFF 139
            G  + +  +S  N        ++      N      P    Q A  Q        +   
Sbjct: 262 AGSGVSFFASSKEN--------IEWYASHAN-VRGIGPNKLNQLAHAQFFGDVAGLKAHM 312

Query: 140 SKIIDILRETADKCCDRLKE----IPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFAL 195
            K    L    ++  + L               P G  F+ V     ++ G  S +   +
Sbjct: 313 LKHAASLAPKFERVLEILDSRLSEYGVAKW-TSPTGGYFISVD----VVPGTASRV---V 364

Query: 196 KLAKEESVIVLPG-----ITVGLKDW-LRITFA-VEPSALENGLGR 234
           +LAKE  + +        +     +  +R+  +    + LE  +  
Sbjct: 365 ELAKEAGIALTGAGSSFPLHNDPNNENIRLAPSLPPVAELEVAMDG 410

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} Length = 404

 Score = 66.1 bits (162), Expect = 8e-13
 Identities = 37/226 (16%), Positives = 83/226 (36%), Gaps = 33/226 (14%)

Query: 27  SFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPL-------LTLGSISK 79
                     K     ++ +  YG   F            SI+         + + S+SK
Sbjct: 201 EVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKN-------PSILASENGKDVAIEIYSLSK 253

Query: 80  RGIVPGLRLGWLVTSDPNGILQDSGIVDSI-KIFLNISSDPATFIQGAVPQILEKTEEEF 138
              + G R+G+ V         +  ++ ++ K   + ++     +Q A    L    ++F
Sbjct: 254 GYNMSGFRVGFAVG--------NKDMIQALKKYQTHTNAGMFGALQDAAIYAL-NHYDDF 304

Query: 139 FSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLA 198
             +  ++ +   D+    L +          +G ++V ++       G +S  +F   L 
Sbjct: 305 LEEQSNVFKTRRDRFEAMLAKADL-PFVH-AKGGIYVWLETP----PGYDS-EQFEQFLV 357

Query: 199 KEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKAFYDRH 242
           +E+S++V PG   G     ++RI+ A++   L+    R+      +
Sbjct: 358 QEKSILVAPGKPFGENGNRYVRISLALDDQKLDEAAIRLTELAYLY 403

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} Length = 376

 Score = 65.3 bits (160), Expect = 1e-12
 Identities = 45/217 (20%), Positives = 87/217 (40%), Gaps = 21/217 (9%)

Query: 27  SFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGL 86
            +       A+K G+ +I +  Y    +       + + G+   ++ L S+SK   + G 
Sbjct: 178 GYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLAGF 237

Query: 87  RLGWLVTSDPNGILQDSGIVDSI-KIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDI 145
           RLG+ + S+          +  + ++   I  +    +     + L KT +E       +
Sbjct: 238 RLGFALGSEE--------ALARLERVKGVIDFNQYAGVLRMGVEAL-KTPKEVVRGYARV 288

Query: 146 LRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIV 205
            RE A    + LK +  ++    P  +M++  +L     EG++  +EF L+L  E  V +
Sbjct: 289 YRERALGMAEALKGV--LSLL-PPRATMYLWGRLP----EGVDD-LEFGLRLV-ERGVAL 339

Query: 206 LPGITVGL--KDWLRITFAVEPSALENGLGRMKAFYD 240
            PG   G   K ++RI        L     R++   D
Sbjct: 340 APGRGFGPGGKGFVRIALVRPLEELLEAAKRIREALD 376

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* Length = 391

 Score = 64.6 bits (157), Expect = 3e-12
 Identities = 38/231 (16%), Positives = 71/231 (30%), Gaps = 34/231 (14%)

Query: 25  SGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVP-LLTLGSISKR-GI 82
            G+    +          VI +  Y    +  TP              + L + SK  G 
Sbjct: 170 DGTIRETVVNRPDDDEAKVIHDFAYYWPHY--TPITRRQ------DHDIMLFTFSKITGH 221

Query: 83  VPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISS-DPATFIQGAVPQILE--------- 132
             G R+GW +  D         +   +  ++ ++S   +   Q    +IL          
Sbjct: 222 -AGSRIGWALVKDKE-------VAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSE 273

Query: 133 KTEEEFFSKIIDILRETADKCCDRLKEIPCITCPK-KPEGSMFVMVKLNYS---LLEGIN 188
              E FF    ++++   +K  + +KE    T PK       +    L         G  
Sbjct: 274 SESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTK 333

Query: 189 SDMEFALKLAKEESVIVLPGITVGL-KDWLRITFAVEPSALENGLGRMKAF 238
            + +   +L +   V+   G   G  K  +R++           L R+   
Sbjct: 334 EETDLVSEL-RRHKVMSRAGERCGSDKKHVRVSMLSREDVFNVFLERLANM 383

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} Length = 430

 Score = 64.3 bits (157), Expect = 3e-12
 Identities = 37/229 (16%), Positives = 82/229 (35%), Gaps = 39/229 (17%)

Query: 32  IAETAKKLG-----IMVIANEVYGHLAFGNTPFVSM-----GVFGSIVPLLTLGSISKRG 81
           I E  K L      ++ + ++ Y  L + +    S+      +  + +  + L   +K  
Sbjct: 214 IVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEF 273

Query: 82  IVPGLRLGWLVTSDPNGILQDSGIVDSIKIFL--NISSDPATFIQGAVPQILEKTEEEFF 139
              G R+G++     +   ++  +   +K  +  NISS      Q AV  +L K  ++F 
Sbjct: 274 FAWGFRVGFMTFGTSDQTTKEV-LEAKVKGLIRSNISS-GPLPTQSAVKHVL-KNNKQFD 330

Query: 140 SKI---IDILRETADKCCDRLKE------IPCITCPKKPEGSMFVMVKLNYSLLEGINSD 190
            +I   I  L+E  +   + +                      F+ +K++      ++ +
Sbjct: 331 KEIEQNIQTLKERYEVTKEVVYADQYHSHWQAYD----FNSGYFMAIKVH-----DVDPE 381

Query: 191 MEFALKLAKEESVIVLPGITVGLKDWLRITFA-VEPSALENGLGRMKAF 238
                 L  + S+ V+          +RI F+ VE   + +    +   
Sbjct: 382 -ALRKHLIDKYSIGVIALNATD----IRIAFSCVEKDDIPHVFDSIAKA 425

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* Length = 546

 Score = 64.1 bits (156), Expect = 5e-12
 Identities = 42/279 (15%), Positives = 81/279 (29%), Gaps = 61/279 (21%)

Query: 21  GSGFSGSFVSPIAETAKK--LGIMVIANEVYGHLAFGNTPFVSMGVFGSIVP--LLTLGS 76
                   +  +     +    +M++ ++VYG  A     F S     +I P   L + S
Sbjct: 259 SVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADD---FQS---LFAICPENTLLVYS 312

Query: 77  ISKRGIVPGLRLGWLV----------------TSDPNGILQ--------------DSGIV 106
            SK     G RLG +                 +       +              D  + 
Sbjct: 313 FSKYFGATGWRLGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVA 372

Query: 107 DSIKIFLNISSDPATFIQGAVPQILE---KTEEEFFSKIIDILRETADKCCDRLKEIPCI 163
           DS  + LN ++  +T  Q  +          E + +   +  L    +    R   +P +
Sbjct: 373 DSRAVALNHTAGLSTPQQVQMALFSLFALMDEADEYKHTLKQLIRRRETTLYRELGMPPL 432

Query: 164 TCPKKPEGSMFVMVKLNYSL-----------LEGINSDMEFALKLAKEESVIVLPGITVG 212
                     + ++ L                   +S  +   ++A E  +++LPG   G
Sbjct: 433 RDE--NAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIADETGIVLLPGRGFG 490

Query: 213 LKDW-LRITFAVEP----SALENGLGRMKAFYDRHAEKQ 246
                 R + A       +A+   L +M          Q
Sbjct: 491 SNRPSGRASLANLNEYEYAAIGRALRKMADELYAEYSGQ 529

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* Length = 432

 Score = 63.8 bits (156), Expect = 6e-12
 Identities = 41/232 (17%), Positives = 77/232 (33%), Gaps = 29/232 (12%)

Query: 27  SFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSI--VP-----LLTLGSISK 79
             ++ + E AKK G +++ +  Y      + P        SI  +P      +   S S 
Sbjct: 218 EQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNP-------RSIFEIPGAEEVAMETASFSN 270

Query: 80  RGIVPGLRLGWLVTSDPNGILQDSGIVDSI---KIFLNISSDPATFIQGAVPQILEKTEE 136
                G+RLGW V   P  +L   G   +    +I     +  +   Q      L     
Sbjct: 271 YAGFTGVRLGWTVI--PKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPEGL 328

Query: 137 EFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALK 196
           E   K+I   +E  +   D    +         + + +V V          +S  +   +
Sbjct: 329 EAMHKVIGFYKENTNIIIDTFTSLGY-DVYG-GKNAPYVWVHF-----PNQSS-WDVFAE 380

Query: 197 LAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKAFYDRHAEKQ 246
           + ++  V+  PG   G   + ++R++       +     R K  Y  H    
Sbjct: 381 ILEKTHVVTTPGSGFGPGGEGFVRVSAFGHRENILEACRRFKQLYKHHHHHH 432

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} Length = 396

 Score = 62.6 bits (153), Expect = 1e-11
 Identities = 42/221 (19%), Positives = 84/221 (38%), Gaps = 39/221 (17%)

Query: 36  AKKLGIMVIANEVYGHLAFGNTPFVSM-----GVFGSIVPLLTLGSISKRGIVPGLRLGW 90
             K G ++ ++E Y  + F     +        +  S   LL   S+SKR  VPGLR G+
Sbjct: 197 QDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSGF 256

Query: 91  LVTSDPNGILQDSGIVDSIKIFLNISS--DPATF--IQGAVPQILEKTEEEFFSKIIDIL 146
           +   D           + +K FL   +    A    +Q A        +E+       + 
Sbjct: 257 VA-GDA----------ELLKNFLLYRTYHGSAMSIPVQRASIAAW--DDEQHVIDNRRLY 303

Query: 147 RETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVL 206
           +E  ++    L+++  +     P+ S ++ +K+          D+ FA  L ++ ++ VL
Sbjct: 304 QEKFERVIPILQQVFDVK---LPDASFYIWLKV------PDGDDLAFARNLWQKAAIQVL 354

Query: 207 PGITVGL--------KDWLRITFAVEPSALENGLGRMKAFY 239
           PG  +          + ++RI    + +        + + Y
Sbjct: 355 PGRFLARDTEQGNPGEGYVRIALVADVATCVKAAEDIVSLY 395

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} Length = 533

 Score = 61.8 bits (150), Expect = 3e-11
 Identities = 50/280 (17%), Positives = 99/280 (35%), Gaps = 64/280 (22%)

Query: 21  GSGFSGSFVSPIAETAKK-LGIMVIANEVYGHLAFGNTPFVSMGVFGSIVP--LLTLGSI 77
              F  + ++ I +  +K   +M+I++EVYG        F S     S+VP   + + S 
Sbjct: 258 SKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPN---FKS---IYSVVPYNTMLVYSY 311

Query: 78  SKRGIVPGLRLGWL-----------------------------VTSDPNGILQDSGIV-D 107
           SK     G RLG +                             V  DP+ +     +  D
Sbjct: 312 SKLFGCTGWRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCAD 371

Query: 108 SIKIFLNISSDPATFIQ---------GAVPQILEKTEEEFFSKIIDILRETADKCCDRLK 158
           S  I L  ++  +T  Q           +      +++ +      ++ E  D+  D + 
Sbjct: 372 SRSIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGGSDDPYIDIARKLVSERYDQLHDAM- 430

Query: 159 EIPCITCPKKPEGSMFVMVKLNYSL-----------LEGINSDMEFALKLAKEESVIVLP 207
           + P            + ++ +               L      ++F LKLA++  V+++ 
Sbjct: 431 QAPKDETD--TNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVVLVD 488

Query: 208 GITVGLKDW-LRITFAVEPSALENGLGR-MKAFYDRHAEK 245
           G+  G K   LR++ A  P+     +G+ +      + E+
Sbjct: 489 GVGFGAKPGELRVSQANLPTEDYALIGKQVLELLKEYYEE 528

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* Length = 400

 Score = 60.3 bits (147), Expect = 8e-11
 Identities = 36/224 (16%), Positives = 69/224 (30%), Gaps = 29/224 (12%)

Query: 27  SFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSM---------GVFGSIVPLLTLGSI 77
             +  I   A +  I+++ +  Y       +   S+          +         + S 
Sbjct: 183 DQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAI--------EINSF 234

Query: 78  SKRGIVPGLRLGWLVT-SDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEE 136
           SK     G+RLGW V   +         I D  +      +  +   Q A    L    +
Sbjct: 235 SKPLGFAGIRLGWTVIPQELTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSILPQ 294

Query: 137 EFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALK 196
               + I   RE +D     L            E + ++ VK      +   SD +    
Sbjct: 295 L---EAIHYYRENSDLLRKALLATGF-EVFG-GEHAPYLWVKPT----QANISDRDLFDF 345

Query: 197 LAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKAF 238
             +E  + + PGI  G     ++R +   +   +     R++  
Sbjct: 346 FLREYHIAITPGIGFGRSGSGFVRFSSLGKREDILAACERLQMA 389

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} Length = 449

 Score = 58.8 bits (143), Expect = 3e-10
 Identities = 30/223 (13%), Positives = 71/223 (31%), Gaps = 28/223 (12%)

Query: 32  IAETAKKLGIMVIANEVYGHLAFGNTPFVSM---------GVFGSIVPLLTLGSISKRGI 82
           +   A+K G +++ +  Y           ++          +           S SK   
Sbjct: 234 LVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAI--------ETCSFSKYAG 285

Query: 83  VPGLRLGWLVT-SDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSK 141
             G+RLGW V          +    D  ++     +  +  +Q      L+    +  + 
Sbjct: 286 FTGVRLGWTVVPKALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEGLKEMNA 345

Query: 142 IIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEE 201
           +I   +E A        E+   +     + + ++ V        G  S  +   ++ +  
Sbjct: 346 MIKFYKENAQILKTTFTEMGF-SVYG-GDDAPYIWVGF-----PGKPS-WDVFAEILERC 397

Query: 202 SVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKAFYDRH 242
           +++  PG   G   + ++R +       +   + R K  Y + 
Sbjct: 398 NIVTTPGSGYGPAGEGFVRASAFGSRENILEAVRRFKEAYGKR 440

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} Length = 361

 Score = 42.5 bits (101), Expect = 6e-05
 Identities = 38/219 (17%), Positives = 79/219 (36%), Gaps = 55/219 (25%)

Query: 21  GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLT------- 73
           G   +      + + A++    +I +E +         F       S V  +        
Sbjct: 158 GGLINKEKFIHVLKLAEEKKKTIIIDEAFIE-------FTGDPSS-SFVGEIKNYSCLFI 209

Query: 74  LGSISKR-GIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFL---NISSDPATFIQGAVPQ 129
           + +++K   + PG+R G+ +T++         I   IK      NI+   A   + A   
Sbjct: 210 IRAMTKFFAM-PGIRFGYGITNNKE-------IAAKIKAKQNPWNINC-FA---EMAAIN 257

Query: 130 ILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINS 189
            L+  +  +  + +  +++   +  + L +I  I     P  + FV+ +     LE I+ 
Sbjct: 258 CLK--DTNYIEESLLWIKKERKRFIEELNKIGFIKRVFSPHAN-FVLCR-----LENISG 309

Query: 190 DMEFALKLAKEESVIVLPGITV-------GLKD-WLRIT 220
           + +    L KE        I +       GL D ++R  
Sbjct: 310 E-KLYDSLLKE-------DIVIRRCCNFIGLDDSFVRFA 340

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} Length = 421

 Score = 41.8 bits (99), Expect = 9e-05
 Identities = 38/227 (16%), Positives = 84/227 (37%), Gaps = 41/227 (18%)

Query: 32  IAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVP-----LLTLGSISKRGIVPGL 86
           IAE  KK G++++++E++  LA       S     ++        + L S +K   + G 
Sbjct: 219 IAELCKKHGVILVSDEIHQDLALFGNTHHS---LNTLDASYKDFTIILSSATKTFNIAGT 275

Query: 87  RLGWLVTSDPN-----GILQDSGIVDSIKIFLNISSDPAT---FIQGAVPQILEKTEEEF 138
           +  + +  + +        Q +     +          AT   F  G          + +
Sbjct: 276 KNSFAIIQNESLRRKFQYRQLANNQHEVPTV----GMIATQAAFQYG----------KPW 321

Query: 139 FSKIIDILRETADKCCDRLKEIPCITCPKKPEGS--MFVMVKLNYSLLEGINSDMEFALK 196
             ++  ++          L+    I    +PEG+  ++    L++S    I    + + K
Sbjct: 322 LEELKTVIEGNIKLVIKELEAKTKIK-VMEPEGTYLVW----LDFSAY-AIAQP-QLSEK 374

Query: 197 LAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKAFYDR 241
           L  E  V++  G   G   K + R+  A   + ++  L R+ + + +
Sbjct: 375 LQNEAKVVLNDGAHFGKEGKYFARLNVATPKNTVQEALSRIISVFGK 421

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* Length = 364

 Score = 39.8 bits (94), Expect = 4e-04
 Identities = 42/219 (19%), Positives = 78/219 (35%), Gaps = 58/219 (26%)

Query: 21  GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLT------- 73
           G       +  IA+  K L I +I +E     AF    F+        +P L        
Sbjct: 160 GLLPERPLLQAIADRCKSLNINLILDE-----AF--IDFIPHET--GFIPALKDNPHIWV 210

Query: 74  LGSISKR-GIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFL---NISSDPATFIQGAVPQ 129
           L S++K   I PGLRLG+LV SD          +  ++      ++++  A     A   
Sbjct: 211 LRSLTKFYAI-PGLRLGYLVNSDDA-------AMARMRRQQMPWSVNA-LA---ALAGEV 258

Query: 130 ILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINS 189
            L+  +  +       LRE   +    L ++P +T       + +++++           
Sbjct: 259 ALQ--DSAWQQATWHWLREEGARFYQALCQLPLLT-VYPGRAN-YLLLRCE-------RE 307

Query: 190 DMEFALKLAKEESVIVLPGITV-------GL-KDWLRIT 220
           D++   +L  +        I +       GL   + R+ 
Sbjct: 308 DIDLQRRLLTQ-------RILIRSCANYPGLDSRYYRVA 339

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	246
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	100.0
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	100.0
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	100.0
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	100.0
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	100.0
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	100.0
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	100.0
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	100.0
3nra_A	407	Aspartate aminotransferase; structural genomics, j	100.0
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	100.0
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	100.0
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	100.0
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	100.0
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	100.0
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	100.0
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	100.0
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	100.0
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	100.0
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	100.0
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	100.0
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	100.0
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	100.0
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	100.0
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	100.0
1vp4_A	425	Aminotransferase, putative; structural genomics, j	100.0
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	100.0
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	100.0
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	100.0
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	100.0
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	100.0
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	100.0
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	100.0
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	100.0
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	100.0
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	100.0
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	100.0
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	100.0
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	100.0
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	100.0
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	100.0
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	100.0
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	100.0
3ele_A	398	Amino transferase; RER070207001803, structural gen	100.0
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	100.0
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	100.0
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	100.0
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	100.0
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	100.0
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	100.0
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	100.0
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	100.0
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	100.0
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	100.0
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	100.0
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	100.0
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	100.0
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	100.0
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	100.0
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	100.0
3rq1_A	418	Aminotransferase class I and II; structural genomi	100.0
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	99.98
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	99.98
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	99.98
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	99.97
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	99.97
4h51_A	420	Aspartate aminotransferase; ssgcid, structural gen	99.97
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	99.97
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	99.97
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	99.97
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	99.97
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	99.97
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	99.97
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	99.97
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	99.97
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	99.97
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	99.96
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	99.96
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	99.96
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	99.96
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	99.96
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	99.96
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	99.95
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	99.94
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	99.94
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	99.94
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	99.93
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	99.93
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	99.93
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	99.93
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	99.93
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	99.93
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	99.93
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	99.93
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	99.93
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	99.93
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	99.93
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	99.92
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	99.92
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	99.92
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	99.92
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	99.92
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	99.92
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	99.92
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	99.92
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	99.91
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	99.91
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	99.91
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	99.91
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.91
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	99.91
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	99.91
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	99.91
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	99.91
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	99.91
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.91
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	99.91
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	99.91
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	99.91
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	99.9
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	99.9
3pj0_A	359	LMO0305 protein; structural genomics, joint center	99.9
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	99.9
1iug_A	352	Putative aspartate aminotransferase; wild type, py	99.9
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	99.9
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	99.9
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	99.9
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	99.89
1z7d_A	433	Ornithine aminotransferase; structural genomics co	99.89
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	99.89
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	99.89
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	99.89
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	99.89
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	99.89
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.89
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	99.89
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	99.89
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	99.89
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.89
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	99.88
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	99.88
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	99.88
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	99.88
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	99.88
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	99.88
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	99.88
3hmu_A	472	Aminotransferase, class III; structural genomics,	99.88
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	99.88
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	99.88
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	99.88
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	99.88
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	99.87
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.87
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	99.87
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	99.87
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.87
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	99.87
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	99.87
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	99.87
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	99.86
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	99.86
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	99.86
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	99.86
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	99.85
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	99.85
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	99.85
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	99.85
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	99.85
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	99.85
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	99.85
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	99.84
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	99.84
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	99.84
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	99.84
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	99.84
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	99.84
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	99.84
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	99.84
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	99.83
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	99.83
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.83
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	99.82
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	99.82
1svv_A	359	Threonine aldolase; structural genomics, structura	99.82
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	99.81
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.81
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	99.81
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	99.8
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	99.8
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	99.8
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	99.79
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	99.79
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	99.79
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	99.78
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	99.66
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	99.78
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	99.77
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	99.76
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	99.74
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	99.74
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	99.73
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	99.73
2fnu_A	375	Aminotransferase; protein-product complex, structu	99.73
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	99.73
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	99.72
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	99.72
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	99.71
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	99.71
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	99.69
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.69
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	99.67
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	99.67
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	99.65
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	99.61
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	99.59
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	99.59
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	99.59
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	99.59
1o69_A	394	Aminotransferase; structural genomics, unknown fun	99.59
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	99.58
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	99.56
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.54
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	99.54
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	99.53
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	99.53
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	99.51
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	99.5
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	99.49
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	99.47
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	99.37
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	99.29
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	99.25
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	99.18
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	99.09
3ou5_A	490	Serine hydroxymethyltransferase, mitochondrial; st	98.95
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	98.86
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	98.59

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=100.00  E-value=2e-37  Score=265.80  Aligned_cols=240  Identities=28%  Similarity=0.537  Sum_probs=199.8

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      |.+++.++++    ++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++..+.++..++...++++++|+
T Consensus       182 ~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~  261 (427)
T 3dyd_A          182 KQLEYLIDEKTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGL  261 (427)
T ss_dssp             HHHHSSCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEES
T ss_pred             HHHHHHhccCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeec
Confidence            3445555433    889999999999999999999999999999999999999999987767677777766789999999


Q ss_pred             ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRL  157 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L  157 (246)
                      ||.|+++|+|+||+++++....+. +++++.+......+++++++.|.++..+|+.....++++.++.++++++.+.+.|
T Consensus       262 sK~~~~~G~riG~~~~~~~~~~~~-~~i~~~l~~~~~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L  340 (427)
T 3dyd_A          262 AKRWLVPGWRLGWILIHDRRDIFG-NEIRDGLVKLSQRILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGAL  340 (427)
T ss_dssp             TTTSSCGGGCCEEEEEECSTTSSH-HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCcCcceEEEEecCcchhhH-HHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999986311110 1567777665433458999999999999996557889999999999999999999


Q ss_pred             hcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHH
Q 042445          158 KEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKA  237 (246)
Q Consensus       158 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~  237 (246)
                      +++|++. +..|++|+|+|++++...+++..++.+++..+++++||.+.||..|+.++++|++++.+++++++++++|.+
T Consensus       341 ~~~~g~~-~~~p~~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~gV~v~~g~~~~~~~~iRis~~~~~e~i~~~l~~l~~  419 (427)
T 3dyd_A          341 AAIPGLR-PVRPSGAMYLMVGIEMEHFPEFENDVEFTERLVAEQSVHCLPATCFEYPNFIRVVITVPEVMMLEACSRIQE  419 (427)
T ss_dssp             HHSTTEE-EECCSBTTEEEEEECGGGCTTCSSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEESCSCHHHHHHHHHHHHH
T ss_pred             hcCCCce-ecCCCeeEEEEEecCHhhcCCCCCHHHHHHHHHHHCCEEEECCcccCCCCeEEEEECCCHHHHHHHHHHHHH
Confidence            9988886 568899999999887543322234677777777899999999999988999999999899999999999999


Q ss_pred             HHHHHh
Q 042445          238 FYDRHA  243 (246)
Q Consensus       238 ~~~~~~  243 (246)
                      +++++.
T Consensus       420 ~l~~~~  425 (427)
T 3dyd_A          420 FCEQHY  425 (427)
T ss_dssp             HHHHHC
T ss_pred             HHHHhh
Confidence            998765

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=100.00  E-value=4.3e-36  Score=257.38  Aligned_cols=216  Identities=19%  Similarity=0.275  Sum_probs=184.4

Q ss_pred             ccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEE
Q 042445           13 SDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLV   92 (246)
Q Consensus        13 ~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~   92 (246)
                      .++||||||.++|.+++++|+++|++||+++|+||+|+++.+++..+.++..++..+++++++||||.|+ +|+|+||++
T Consensus       197 ~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~-~GlRiG~~~  275 (425)
T 2r2n_A          197 VPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIIS-SGLRIGFLT  275 (425)
T ss_dssp             CCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTC-STTCCEEEE
T ss_pred             CCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCcccccCCCCCCCCccccCCCCCEEEEccchhhcc-CccceEEEe
Confidence            3688999999999999999999999999999999999999988766666666766678999999999997 999999999


Q ss_pred             eeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhc----hHHHHHHHHHHHHHHHHHHHHHhhc-CCCCccc
Q 042445           93 TSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKT----EEEFFSKIIDILRETADKCCDRLKE-IPCITCP  166 (246)
Q Consensus        93 ~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~----~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~  166 (246)
                      +++        ++++.+..... .+.++|++.|.++..+|+..    ...++++.++.++++++.+.+.|++ ++++..+
T Consensus       276 ~~~--------~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~  347 (425)
T 2r2n_A          276 GPK--------PLIERVILHIQVSTLHPSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEW  347 (425)
T ss_dssp             EEH--------HHHHHHHHHHHTTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEE
T ss_pred             cCH--------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEE
Confidence            998        99998887643 34578999999999999852    1478899999999999999999987 6776435


Q ss_pred             cCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC-----CCeEEEEee-cChHHHHHHHHHHHHHHH
Q 042445          167 KKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-----KDWLRITFA-VEPSALENGLGRMKAFYD  240 (246)
Q Consensus       167 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-----~~~iRls~~-~~~~~l~~~~~~l~~~~~  240 (246)
                      ..|++|+|+|++++...     ++.+++.+.+.++||.+.||..|+.     .+++|++++ .+++++++++++|.++++
T Consensus       348 ~~p~~g~~~~~~~~~~~-----~~~~~~~~~l~~~gv~v~pg~~f~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~  422 (425)
T 2r2n_A          348 HVPAAGMFLWIKVKGIN-----DVKELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSSASPEQMDVAFQVLAQLIK  422 (425)
T ss_dssp             CCCSBSSEEEEEETTCS-----CCHHHHHTHHHHTTEECEEGGGGSSSTTSCCCEEEEECSSCCHHHHHHHHHHHHHHHH
T ss_pred             eCCCceEEEEEEeCCCC-----CHHHHHHHHHHHCCcEEechhhhcCCCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence            67899999999997532     3455566778899999999998864     479999998 599999999999999987


Q ss_pred             HH
Q 042445          241 RH  242 (246)
Q Consensus       241 ~~  242 (246)
                      +.
T Consensus       423 ~~  424 (425)
T 2r2n_A          423 ES  424 (425)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=100.00  E-value=7e-36  Score=257.70  Aligned_cols=217  Identities=21%  Similarity=0.349  Sum_probs=184.8

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      ++++||||||.++|.+++++|+++|++||++||+||+|.++.+++..+.++..++..+++++++||||.|+ +|+|+||+
T Consensus       222 ~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~~-~GlriG~v  300 (448)
T 3aow_A          222 TVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKILA-PGFRIGWM  300 (448)
T ss_dssp             ECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTTTC-GGGCCEEE
T ss_pred             ECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhhcc-ccccEEEE
Confidence            46899999999999999999999999999999999999999988766667767766678999999999998 99999999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhhc-CC-CCcccc
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADKCCDRLKE-IP-CITCPK  167 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~-~~-~~~~~~  167 (246)
                      ++++        ++++.+..... .+.++|++.|.++.++|+... +.++++.++.++++++.+.+.|++ +| ++. +.
T Consensus       301 ~~~~--------~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~-~~  371 (448)
T 3aow_A          301 VGDP--------GIIRKMEIAKQSTDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVK-WT  371 (448)
T ss_dssp             EECH--------HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCE-EC
T ss_pred             EeCH--------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeE-Ee
Confidence            9998        99998877643 344779999999999998653 688999999999999999999987 67 576 56


Q ss_pred             CCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC----CCeEEEEeec-ChHHHHHHHHHHHHHHHHH
Q 042445          168 KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL----KDWLRITFAV-EPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       168 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----~~~iRls~~~-~~~~l~~~~~~l~~~~~~~  242 (246)
                      .|++|+|+|++++...     +..+++.. |.++||.+.||..|+.    ++++|++++. +++++++++++|.+++++.
T Consensus       372 ~p~~g~~~~v~~~~~~-----~~~~l~~~-l~~~gV~v~pg~~f~~~~~~~~~iRls~~~~~~e~i~~~~~~L~~~l~~~  445 (448)
T 3aow_A          372 KPEGGMFIWVTLPDGI-----DSKKMLER-AIKKGVAYVPGEAFYAHRDVKNTMRLNFTYVDEDKIMEGIKRLAETIKEE  445 (448)
T ss_dssp             CCSBSSEEEEECSTTC-----CHHHHHHH-HHHTTEECEEGGGGSTTCCCCSEEEEECSSSCTHHHHHHHHHHHHHHHHH
T ss_pred             CCCccEEEEEEcCCCC-----CHHHHHHH-HHHCCcEEEcchhhcCCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence            7899999999987431     34555555 5566999999998853    6899999997 7999999999999999876


Q ss_pred             hh
Q 042445          243 AE  244 (246)
Q Consensus       243 ~~  244 (246)
                      .+
T Consensus       446 ~~  447 (448)
T 3aow_A          446 LK  447 (448)
T ss_dssp             HC
T ss_pred             Hh
Confidence            54

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=100.00  E-value=2.2e-36  Score=255.94  Aligned_cols=221  Identities=18%  Similarity=0.305  Sum_probs=183.1

Q ss_pred             hhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccc
Q 042445            3 LINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSIS   78 (246)
Q Consensus         3 ~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~s   78 (246)
                      .+++.++++    ++++||||||.++|.+++++|+++|++||+++|+||+|.++.+++ .+.++..+.+ +++++++|||
T Consensus       156 ~l~~~l~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~-~~~i~~~s~S  233 (385)
T 1b5p_A          156 RVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEG-EHFSPGRVAP-EHTLTVNGAA  233 (385)
T ss_dssp             HHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSS-CCCCGGGTCT-TTEEEEEEST
T ss_pred             HHHHhcCCCCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCC-CCCCHHHcCC-CCEEEEEech
Confidence            455555433    788999999999999999999999999999999999999998876 4555555655 7899999999


Q ss_pred             cccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhc--hHHHHHHHHHHHHHHHHHHHH
Q 042445           79 KRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKT--EEEFFSKIIDILRETADKCCD  155 (246)
Q Consensus        79 K~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~~~~~~l~~  155 (246)
                      |.|+++|+|+||+++++        ++++.+...... +.+++.+.|.++.++|+..  ...++++.++.++++++.+.+
T Consensus       234 K~~~~~G~RiG~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~  305 (385)
T 1b5p_A          234 KAFAMTGWRIGYACGPK--------EVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLE  305 (385)
T ss_dssp             TTTTCGGGCCEEEECCH--------HHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcCCcccceEEEEeCH--------HHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988        898888876443 3478999999999999741  246789999999999999999


Q ss_pred             HhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHH
Q 042445          156 RLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRM  235 (246)
Q Consensus       156 ~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l  235 (246)
                      .|+++ |+. +..|++++|+|+.++...   . +..++... |.++||.+.||..|+.++++|+|++.+++++++++++|
T Consensus       306 ~L~~~-g~~-~~~~~~~~~~~~~~~~~~---~-~~~~l~~~-l~~~gv~v~~g~~f~~~~~iRis~~~~~~~i~~~l~~l  378 (385)
T 1b5p_A          306 GLTAL-GLK-AVRPSGAFYVLMDTSPIA---P-DEVRAAER-LLEAGVAVVPGTDFAAFGHVRLSYATSEENLRKALERF  378 (385)
T ss_dssp             HHHHH-TCC-BCCCSBTTEEEEECTTTC---S-SHHHHHHH-HHHTTEECEESGGGTCTTEEEEECCSCHHHHHHHHHHG
T ss_pred             HHHHC-CCe-ecCCCeeEEEEEecCCCC---C-CHHHHHHH-HHHCCeEEecccccCCCCeEEEEecCCHHHHHHHHHHH
Confidence            99987 776 567889999999886311   1 35555555 44999999999999778999999998889999999999


Q ss_pred             HHHHH
Q 042445          236 KAFYD  240 (246)
Q Consensus       236 ~~~~~  240 (246)
                      .++++
T Consensus       379 ~~~l~  383 (385)
T 1b5p_A          379 ARVLG  383 (385)
T ss_dssp             GGGC-
T ss_pred             HHHHh
Confidence            87764

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=100.00  E-value=1.4e-35  Score=253.19  Aligned_cols=240  Identities=29%  Similarity=0.480  Sum_probs=190.3

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCC----CCccccccCCcccEEE
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNT----PFVSMGVFGSIVPLLT   73 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~----~~~~~~~~~~~~~~i~   73 (246)
                      +.+++.++++    ++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++.    .+.++..++..+++++
T Consensus       168 ~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~  247 (416)
T 1bw0_A          168 DEIRRLKDDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVI  247 (416)
T ss_dssp             HHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEE
T ss_pred             HHHHHHhccCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEEE
Confidence            3455555433    7889999999999999999999999999999999999999988765    4555555555557899


Q ss_pred             EcccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 042445           74 LGSISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKC  153 (246)
Q Consensus        74 ~~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l  153 (246)
                      ++|+||.|+++|+|+||+++++...+..  .+...++......+++|++.|.++..+|+...+.++++.++.++++++.+
T Consensus       248 ~~s~sK~~~~~Glr~G~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l  325 (416)
T 1bw0_A          248 LGGTAKNLVVPGWRLGWLLYVDPHGNGP--SFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYL  325 (416)
T ss_dssp             EEESTTTTSCGGGCCEEEEEECTTCSCH--HHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHH
T ss_pred             EecchhhCCCCCceEEEEEeeCchhhHH--HHHHHHHHHhccccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999987211221  24434443322334789999999999998544778899999999999999


Q ss_pred             HHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHH
Q 042445          154 CDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLG  233 (246)
Q Consensus       154 ~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~  233 (246)
                      .+.|++++++. +..|++|+|+|++++...+++..+..+++..+++++||.+.||..|+.++++|++++.++++++++++
T Consensus       326 ~~~L~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~iRis~~~~~e~l~~~l~  404 (416)
T 1bw0_A          326 YNHIGECIGLA-PTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTTRPVEVYREAVE  404 (416)
T ss_dssp             HHHHTTSTTEE-ECCCCBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCSCHHHHHHHHH
T ss_pred             HHHHHhCCCCc-ccCCCeeEEEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccccCCCCeEEEEecCCHHHHHHHHH
Confidence            99999887877 45788899999988643211111355666666678999999999998789999999888999999999


Q ss_pred             HHHHHHHHHhh
Q 042445          234 RMKAFYDRHAE  244 (246)
Q Consensus       234 ~l~~~~~~~~~  244 (246)
                      +|.+++++..+
T Consensus       405 ~l~~~l~~~~~  415 (416)
T 1bw0_A          405 RIKAFCQRHAA  415 (416)
T ss_dssp             HHHHHHHHHBC
T ss_pred             HHHHHHHHhhc
Confidence            99999987654

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=100.00  E-value=7.4e-36  Score=260.55  Aligned_cols=224  Identities=21%  Similarity=0.217  Sum_probs=183.3

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCC-CCccccccC--------CcccEEEEccccccc-
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNT-PFVSMGVFG--------SIVPLLTLGSISKRG-   81 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~--------~~~~~i~~~s~sK~~-   81 (246)
                      +++|||||||.++|.+++++|+++|++||+++|+||+|.++.+++. .+.++..+.        ...++++++||||.| 
T Consensus       240 ~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~  319 (498)
T 3ihj_A          240 CIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYM  319 (498)
T ss_dssp             EEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTT
T ss_pred             EEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccc
Confidence            7789999999999999999999999999999999999999999753 455554432        223589999999999 


Q ss_pred             ccCCceEEEEEe---eCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhc------hH---HHHHHHHHHHHHH
Q 042445           82 IVPGLRLGWLVT---SDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKT------EE---EFFSKIIDILRET  149 (246)
Q Consensus        82 ~~~g~r~G~i~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~------~~---~~~~~~~~~~~~~  149 (246)
                      |++|+|+||++.   ++        ++++.+........+++.+.|.++..+++..      -+   .+..+.++.++++
T Consensus       320 G~~G~R~G~~~~~~~~~--------~l~~~l~~~~~~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~  391 (498)
T 3ihj_A          320 GECGYRGGYMEVINLHP--------EIKGQLVKLLSVRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKK  391 (498)
T ss_dssp             CCSSSCCEEEEEESCCH--------HHHHHHHHHHHHSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred             cCcccceEEEEEecCCH--------HHHHHHHHHHhccCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHH
Confidence            789999999984   55        8888888776666688999999999999741      12   3456778899999


Q ss_pred             HHHHHHHhhcCCCCccccCCCCceEEEEEecccc--c-----cCCCChHH-HHHHHHHhcCeEEecCCCcCC---CCeEE
Q 042445          150 ADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSL--L-----EGINSDME-FALKLAKEESVIVLPGITVGL---KDWLR  218 (246)
Q Consensus       150 ~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~--~-----~~~~~~~~-~~~~ll~~~gi~v~pg~~f~~---~~~iR  218 (246)
                      ++.+.+.|++++|+. +..|++|+|+|++++.+.  .     .+. ++.+ ++.++|+++||.+.||..|+.   ++++|
T Consensus       392 ~~~l~~~L~~~~g~~-~~~p~gg~~~~~~l~~p~~~~~~~~~~g~-~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~R  469 (498)
T 3ihj_A          392 AKLTEDLFNQVPGIH-CNPLQGAMYAFPRIFIPAKAVEAAQAHQM-APDMFYCMKLLEETGICVVPGSGFGQREGTYHFR  469 (498)
T ss_dssp             HHHHHHHHHTSTTEE-CCCCCBSSEECCEECCCHHHHHHHHHTTS-CHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEE
T ss_pred             HHHHHHHHhcCCCcE-ecCCCeEEEEEEeccCchhhhHHHHhcCC-CcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEE
Confidence            999999999988887 578999999998775321  0     012 2333 378889999999999999984   56999


Q ss_pred             EEeecChHHHHHHHHHHHHHHHHHhhc
Q 042445          219 ITFAVEPSALENGLGRMKAFYDRHAEK  245 (246)
Q Consensus       219 ls~~~~~~~l~~~~~~l~~~~~~~~~~  245 (246)
                      ++++.+++++++++++|.++++++.++
T Consensus       470 is~~~~~e~l~~~i~~L~~~~~~~~~~  496 (498)
T 3ihj_A          470 MTILPPVEKLKTVLQKVKDFHINFLEK  496 (498)
T ss_dssp             EECCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999889999999999999999887653

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=100.00  E-value=1.9e-35  Score=258.22  Aligned_cols=224  Identities=19%  Similarity=0.215  Sum_probs=183.6

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCC-CCCccccc----c---CCcccEEEEccccccc-c
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGN-TPFVSMGV----F---GSIVPLLTLGSISKRG-I   82 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~-~~~~~~~~----~---~~~~~~i~~~s~sK~~-~   82 (246)
                      +++|||||||.++|.+++++|+++|+++|+++|+||+|.++.+++ ..+.++..    +   ....++++++||||.| |
T Consensus       242 vl~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g  321 (500)
T 3tcm_A          242 VVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYG  321 (500)
T ss_dssp             EEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTC
T ss_pred             EEECCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCC
Confidence            788999999999999999999999999999999999999999864 34445432    2   2334689999999998 8


Q ss_pred             cCCceEEEEEe---eCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhc---------hHHHHHHHHHHHHHHH
Q 042445           83 VPGLRLGWLVT---SDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKT---------EEEFFSKIIDILRETA  150 (246)
Q Consensus        83 ~~g~r~G~i~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~---------~~~~~~~~~~~~~~~~  150 (246)
                      ++|+|+||+++   ++        ++++.+.......+++++++|.++..+++..         ...++.+.++.+++++
T Consensus       322 ~~G~R~G~~~~~~~~~--------~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~  393 (500)
T 3tcm_A          322 ECGKRGGYFEITGFSA--------PVREQIYKIASVNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRA  393 (500)
T ss_dssp             CGGGCCEEEEEESCCT--------THHHHHHHHHHTTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCccceEEEEEeCCCH--------HHHHHHHHHHhcccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHH
Confidence            99999999998   55        8888888776655688999999999999732         2356788888999999


Q ss_pred             HHHHHHhhcCCCCccccCCCCceEEEEEecccc-------ccCCCChHHHHHHHHHhcCeEEecCCCcCC---CCeEEEE
Q 042445          151 DKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSL-------LEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRIT  220 (246)
Q Consensus       151 ~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~iRls  220 (246)
                      +.+.+.|++++|+. +..|++|+|+|+++..+.       ..+..++..++.++|+++||.+.||..|+.   ++++|++
T Consensus       394 ~~l~~~L~~~~g~~-~~~~~g~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis  472 (500)
T 3tcm_A          394 KALEHAFNKLEGIT-CNEAEGAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCT  472 (500)
T ss_dssp             HHHHHHHHTSTTEE-CCCCCBTTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEE
T ss_pred             HHHHHHHhcCCCcE-EecCCeEEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEE
Confidence            99999999988888 578999999997664321       001212344567889899999999999984   5689999


Q ss_pred             eecChHHHHHHHHHHHHHHHHHhh
Q 042445          221 FAVEPSALENGLGRMKAFYDRHAE  244 (246)
Q Consensus       221 ~~~~~~~l~~~~~~l~~~~~~~~~  244 (246)
                      ++.+++++++++++|.++++++.+
T Consensus       473 ~~~~~e~i~~~i~~l~~~~~~~~~  496 (500)
T 3tcm_A          473 ILPQEDKIPAVISRFTVFHEAFMS  496 (500)
T ss_dssp             SCSCTTTHHHHHHHHHHHHHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHHHHHH
Confidence            998889999999999999987764

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=100.00  E-value=3.8e-35  Score=247.19  Aligned_cols=227  Identities=15%  Similarity=0.194  Sum_probs=190.8

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCC-CCCccccccCCcccEEEEcc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGN-TPFVSMGVFGSIVPLLTLGS   76 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~~~~~i~~~s   76 (246)
                      |.+++.++++    ++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++ ..+.++..+...++++++.|
T Consensus       141 ~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s  220 (377)
T 3fdb_A          141 HDVEKGFQAGARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITITA  220 (377)
T ss_dssp             HHHHHHHHTTCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEEC
T ss_pred             HHHHHHhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEEe
Confidence            4556655543    889999999999999999999999999999999999999999887 55556655555678999999


Q ss_pred             cccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445           77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD  155 (246)
Q Consensus        77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  155 (246)
                      +||.+|++|+|+||+++++.       ++++.+..... .++++|++.|.++..++... +.++++.++.++++++.+.+
T Consensus       221 ~sK~~g~~G~r~G~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~  292 (377)
T 3fdb_A          221 PSKAWNIAGLKCAQIIFSNP-------SDAEHWQQLSPVIKDGASTLGLIAAEAAYRYG-TDFLNQEVAYLKNNHDFLLH  292 (377)
T ss_dssp             STTTTTCGGGCCEEEECCSH-------HHHHHHHHSCHHHHCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHhccCcchhheEEEeCCH-------HHHHHHHHHHHhhcCCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988542       78888876633 34588999999999999853 67889999999999999999


Q ss_pred             Hhhc-CCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHH
Q 042445          156 RLKE-IPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGL  232 (246)
Q Consensus       156 ~L~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~  232 (246)
                      .|++ +|++. +..|.+++++|++++....     +.+++..+++++||.+.||..|+.  ++++|++++.+++++++++
T Consensus       293 ~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~~~~e~i~~~l  366 (377)
T 3fdb_A          293 EIPKRIPGAK-ITPMQATYLMWIDFRDTTI-----EGSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFATSREVLEEAI  366 (377)
T ss_dssp             HHHHHSTTCE-ECCCSBCSEEEEECTTSCC-----CSCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHH
T ss_pred             HHHhhCCCce-EecCCeeEEEEEECcccCC-----CHHHHHHHHHhCCEEecCChhccCCCCCEEEEEeCCCHHHHHHHH
Confidence            9998 88887 5688999999998875321     345667777777999999999886  7999999999999999999


Q ss_pred             HHHHHHHHHH
Q 042445          233 GRMKAFYDRH  242 (246)
Q Consensus       233 ~~l~~~~~~~  242 (246)
                      ++|.++++++
T Consensus       367 ~~l~~~l~~~  376 (377)
T 3fdb_A          367 DRMAKAVSHH  376 (377)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHHhhc
Confidence            9999988653

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=100.00  E-value=6.8e-35  Score=248.00  Aligned_cols=228  Identities=18%  Similarity=0.268  Sum_probs=190.0

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccC--CcccEEEEc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFG--SIVPLLTLG   75 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~--~~~~~i~~~   75 (246)
                      |.+++.++++    ++++||||||.++|.+++++|+++|++||+++|+||+|.++.+++..+.++..++  ..++++++.
T Consensus       170 ~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~  249 (407)
T 3nra_A          170 TGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIM  249 (407)
T ss_dssp             HHHHHHHHTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEE
T ss_pred             HHHHHHHhhCCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEe
Confidence            3455555433    7899999999999999999999999999999999999999999877666666664  466899999


Q ss_pred             ccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 042445           76 SISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCC  154 (246)
Q Consensus        76 s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~  154 (246)
                      |+||.|+++|+|+||+++++        ++++.+..... .+++.+++.|.++..++.. ...++++.++.++++++.+.
T Consensus       250 s~sK~~g~~G~r~G~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~  320 (407)
T 3nra_A          250 GPSKTESLSGYRLGVAFGSR--------AIIARMEKLQAIVSLRAAGYSQAVLRGWFDE-APGWMEDRIARHQAIRDELL  320 (407)
T ss_dssp             CSSSTTCCGGGCCEEEEECH--------HHHHHHHHHHHHHTSSSCHHHHGGGGGTTCC-CTTHHHHHHHHHHHHHHHHH
T ss_pred             CcccccCCCeeeEEEEEcCH--------HHHHHHHHHHhhhccCCChHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHH
Confidence            99999999999999999988        89998887643 4557788999998888874 24667888888999999999


Q ss_pred             HHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHH
Q 042445          155 DRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGL  232 (246)
Q Consensus       155 ~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~  232 (246)
                      +.|++++++. +..|.+|+|+|++++...    .+..++...+++++||.+.||..|+.  ++++|++++.+++++++++
T Consensus       321 ~~L~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~i~~~~  395 (407)
T 3nra_A          321 HVLRGCEGVF-ARTPQAGSYLFPRLPKLA----VAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQDHEAAVAAA  395 (407)
T ss_dssp             HHHHTSTTCB-CCCCSBSSEECCBCCCBS----SCHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECCSCHHHHHHHH
T ss_pred             HHHhcCCCce-eccCCeeEEEEEeCCCCC----CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeCCCHHHHHHHH
Confidence            9999988887 567888999998886521    13556666655678999999998874  7999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 042445          233 GRMKAFYDRHA  243 (246)
Q Consensus       233 ~~l~~~~~~~~  243 (246)
                      ++|.+++++++
T Consensus       396 ~~l~~~~~~~~  406 (407)
T 3nra_A          396 RRIVTLVERYR  406 (407)
T ss_dssp             HHHHHHHHHHB
T ss_pred             HHHHHHHHHhh
Confidence            99999998764

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=100.00  E-value=9.5e-35  Score=247.46  Aligned_cols=224  Identities=17%  Similarity=0.265  Sum_probs=185.0

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccC-CcccEEEEcc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFG-SIVPLLTLGS   76 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~~~i~~~s   76 (246)
                      +.+++.++++    ++++||||||.++|.+++++|+++|+++|+++|+||+|.++.+++. +.++..+. ..++++++.|
T Consensus       172 ~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~~~~i~~~s  250 (404)
T 2o1b_A          172 SKVDSQIIDKTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAK-NPSILASENGKDVAIEIYS  250 (404)
T ss_dssp             GGSCHHHHHHEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSC-CCCGGGSTTHHHHEEEEEE
T ss_pred             HHHHHhhccCceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCC-CCChhhcCCCCCCEEEEEe
Confidence            4455554432    7789999999999999999999999999999999999999988653 33443443 3467899999


Q ss_pred             cccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445           77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD  155 (246)
Q Consensus        77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  155 (246)
                      +||.|+++|+|+||+++++        ++++.+..... .++++|++.|.++..+|+.. +.++++.++.++++++.+.+
T Consensus       251 ~sK~~g~~G~r~G~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~  321 (404)
T 2o1b_A          251 LSKGYNMSGFRVGFAVGNK--------DMIQALKKYQTHTNAGMFGALQDAAIYALNHY-DDFLEEQSNVFKTRRDRFEA  321 (404)
T ss_dssp             STTTTTCGGGCCEEEEECH--------HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhccCchhheEeEecCH--------HHHHHHHHHHhhccCCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999987        89998887644 34588999999999999854 77899999999999999999


Q ss_pred             HhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHH
Q 042445          156 RLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLG  233 (246)
Q Consensus       156 ~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~  233 (246)
                      .|+++ ++. +..|.+|+|+|++++...     +..++...+++++||.+.||..|+.  ++++|++++.++++++++++
T Consensus       322 ~L~~~-g~~-~~~~~~g~~~~~~~~~~~-----~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~~~e~l~~~l~  394 (404)
T 2o1b_A          322 MLAKA-DLP-FVHAKGGIYVWLETPPGY-----DSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLALDDQKLDEAAI  394 (404)
T ss_dssp             HHHHT-TCC-EECCCBSSEEEEECCTTC-----CHHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCSCTTHHHHHHH
T ss_pred             HHHhc-CCe-ecCCCcceEEEEeCCCCC-----CHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcCCHHHHHHHHH
Confidence            99987 666 467888999999886421     3556666666678999999998875  78999999998889999999


Q ss_pred             HHHHHHHHH
Q 042445          234 RMKAFYDRH  242 (246)
Q Consensus       234 ~l~~~~~~~  242 (246)
                      +|.++++++
T Consensus       395 ~l~~~l~~~  403 (404)
T 2o1b_A          395 RLTELAYLY  403 (404)
T ss_dssp             HHHGGGGGG
T ss_pred             HHHHHHHhh
Confidence            999988664

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=100.00  E-value=2.4e-34  Score=244.23  Aligned_cols=230  Identities=13%  Similarity=0.139  Sum_probs=188.4

Q ss_pred             hhhhhhhc-cc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC--cccEEEE
Q 042445            2 ELINQDIT-RE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS--IVPLLTL   74 (246)
Q Consensus         2 e~~~~~~~-~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~--~~~~i~~   74 (246)
                      |.+++.++ .+    ++++||||||.++|.+++++|+++|++||+++|+||+|.++.+++..+.++..+..  .++++++
T Consensus       154 ~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~  233 (399)
T 1c7n_A          154 QKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITF  233 (399)
T ss_dssp             HHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEE
T ss_pred             HHHHHHhccCCCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCccccCcEEEE
Confidence            44555555 22    77899999999999999999999999999999999999999987755556655544  4688999


Q ss_pred             cccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhc-C-CCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 042445           75 GSISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNIS-S-DPATFIQGAVPQILEKTEEEFFSKIIDILRETADK  152 (246)
Q Consensus        75 ~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~  152 (246)
                      .|+||.|+++|+|+||+++++.       ++++.+......+ + ++|++.|.++.+++... +.++++.++.++++++.
T Consensus       234 ~s~sK~~~~~G~r~G~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~  305 (399)
T 1c7n_A          234 TAPSKTFNIAGMGMSNIIIKNP-------DIRERFTKSRDATSGMPFTTLGYKACEICYKEC-GKWLDGCIKVIDKNQRI  305 (399)
T ss_dssp             ECSHHHHTCGGGCCEEEECCCH-------HHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHH
T ss_pred             EeChhhccccchheEEEEECCH-------HHHHHHHHHHhhcccCCCCHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHH
Confidence            9999999999999999999852       6888887764432 2 67999999999999853 67899999999999999


Q ss_pred             HHHHhhc-CCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHH
Q 042445          153 CCDRLKE-IPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALE  229 (246)
Q Consensus       153 l~~~L~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~  229 (246)
                      +.+.|++ +|++. +..|.+++++|++++...   . +..++...+++++||.+.||..|+.  ++++|++++.++++++
T Consensus       306 l~~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~---~-~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~l~  380 (399)
T 1c7n_A          306 VKDFFEVNHPEIK-APLIEGTYLQWIDFRALK---M-DHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAPSSVIQ  380 (399)
T ss_dssp             HHHHHHHHCTTSB-CCCCSBSSEEEEECGGGC---C-CHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCSCHHHHH
T ss_pred             HHHHHHhhCCCCe-EecCCceEEEEEEcccCC---C-CHHHHHHHHHHhCCEEEeCccccCCCCCCeEEEEeccCHHHHH
Confidence            9999998 88887 567888999999887421   1 3455555544589999999998873  7899999998888999


Q ss_pred             HHHHHHHHHHHHHhh
Q 042445          230 NGLGRMKAFYDRHAE  244 (246)
Q Consensus       230 ~~~~~l~~~~~~~~~  244 (246)
                      +++++|.+++++..+
T Consensus       381 ~~l~~l~~~l~~~~~  395 (399)
T 1c7n_A          381 ESLERLNKALKDLKN  395 (399)
T ss_dssp             HHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999987654

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=100.00  E-value=1.8e-34  Score=244.10  Aligned_cols=227  Identities=21%  Similarity=0.379  Sum_probs=187.7

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC--cccEEEEc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS--IVPLLTLG   75 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~--~~~~i~~~   75 (246)
                      |.+++.++++    ++++||||||.++|.+++++|+++|++||+++|+||+|.++.+++..+.++..+..  .++++++.
T Consensus       154 ~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (388)
T 1j32_A          154 EQIRQAITPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCS  233 (388)
T ss_dssp             HHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEE
T ss_pred             HHHHHhcCcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEe
Confidence            3455555443    77899999999999999999999999999999999999999987755556555543  46789999


Q ss_pred             ccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 042445           76 SISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCC  154 (246)
Q Consensus        76 s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~  154 (246)
                      |+||.|+++|+|+||+++++        ++++.+..... .+.+++++.|.++..+|... ..++++.++.++++++.+.
T Consensus       234 s~sK~~~~~G~r~G~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~  304 (388)
T 1j32_A          234 GFAKTYAMTGWRVGFLAGPV--------PLVKAATKIQGHSTSNVCTFAQYGAIAAYENS-QDCVQEMLAAFAERRRYML  304 (388)
T ss_dssp             ESTTTTTCTTTCCEEEECCH--------HHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSC-SHHHHHHHHHHHHHHHHHH
T ss_pred             echhccCCcccceEEEEeCH--------HHHHHHHHHHhhcccCCCHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999988        88888877643 34578999999998999743 5678889999999999999


Q ss_pred             HHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHH
Q 042445          155 DRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGR  234 (246)
Q Consensus       155 ~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~  234 (246)
                      +.|++++++. +..|.+++++|++++...   . +..++...+++++||.+.||..|+.++++|++++.+++++++++++
T Consensus       305 ~~L~~~~g~~-~~~~~~~~~~~~~~~~~~---~-~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~i~~~~~~  379 (388)
T 1j32_A          305 DALNAMPGLE-CPKPDGAFYMFPSIAKTG---R-SSLDFCSELLDQHQVATVPGAAFGADDCIRLSYATDLDTIKRGMER  379 (388)
T ss_dssp             HHHHTCTTCB-CCCCCBTTEECCBCGGGT---C-CHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECCSCHHHHHHHHHH
T ss_pred             HHHhhCCCCc-ccCCCeeEEEEEecCCCC---C-CHHHHHHHHHHhCCEEEeChhhhCCCCcEEEEecCCHHHHHHHHHH
Confidence            9999987887 467888999998775311   1 3555655555568999999998887899999999899999999999


Q ss_pred             HHHHHHHH
Q 042445          235 MKAFYDRH  242 (246)
Q Consensus       235 l~~~~~~~  242 (246)
                      |.++++++
T Consensus       380 l~~~l~~~  387 (388)
T 1j32_A          380 LEKFLHGI  387 (388)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998764

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=100.00  E-value=3.5e-34  Score=244.38  Aligned_cols=229  Identities=20%  Similarity=0.257  Sum_probs=186.2

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEcc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGS   76 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s   76 (246)
                      +.+++.++++    ++++||||||.++|.+++++|+++|++||+++|+||+|.++.+++..+.++..+.. .++++++.|
T Consensus       163 ~~l~~~i~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s  242 (412)
T 2x5d_A          163 ERAIRESIPKPRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFT  242 (412)
T ss_dssp             HHHHHTEESCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEE
T ss_pred             HHHHHhcccCceEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEec
Confidence            3455555433    77899999999999999999999999999999999999999987654555555543 568999999


Q ss_pred             cccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445           77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD  155 (246)
Q Consensus        77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  155 (246)
                      +||.|+++|+|+||+++++        ++++.+..... .++++|++.|.++..+|+.. +.++++.++.++++++.+.+
T Consensus       243 ~sK~~~~~G~r~G~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~  313 (412)
T 2x5d_A          243 LSKSYNMAGWRIGFMVGNP--------ELVSALARIKSYHDYGTFTPLQVAAIAALEGD-QQCVRDIARQYQQRRDVLVK  313 (412)
T ss_dssp             CC-CCSCTTSCCEEEEECH--------HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHSC-SHHHHHHHHHHHHHHHHHHH
T ss_pred             CccccCCcccceEEEEcCH--------HHHHHHHHHHhhhccCCCHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHH
Confidence            9999989999999999987        88888877643 34588999999999999853 46789999999999999999


Q ss_pred             HhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHH
Q 042445          156 RLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLG  233 (246)
Q Consensus       156 ~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~  233 (246)
                      .|+++ ++. +..|.+|+|+|++++... . ..+..++...+++++||.+.||..|+.  ++++|++++.++++++++++
T Consensus       314 ~L~~~-g~~-~~~~~~g~~~~~~~~~~~-~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~~~~~l~~~l~  389 (412)
T 2x5d_A          314 GLREA-GWM-VENPKASMYVWAKIPEPY-A-HLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIENRDRLRQAVR  389 (412)
T ss_dssp             HHHHH-TCC-CCCCSBSSEEEEECCTTT-G-GGCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHH
T ss_pred             HHHHC-CCE-ecCCCeeeEEEEEcCCcc-C-CCCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHH
Confidence            99987 666 467788999999886321 0 002556666666678999999998864  68999999999999999999


Q ss_pred             HHHHHHHHHh
Q 042445          234 RMKAFYDRHA  243 (246)
Q Consensus       234 ~l~~~~~~~~  243 (246)
                      +|.+++++..
T Consensus       390 ~l~~~l~~~~  399 (412)
T 2x5d_A          390 GIKAMFRADG  399 (412)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHhcC
Confidence            9999987654

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=100.00  E-value=1.2e-34  Score=248.68  Aligned_cols=219  Identities=17%  Similarity=0.235  Sum_probs=179.7

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccC-CcccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFG-SIVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      ++++||||||.++|.+++++|+++|++||+++|+||+|.++.+++.+. ++..+. ..+++++++|+||.||++|+|+||
T Consensus       203 ~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~-~~~~~~~~~~~~i~~~S~SK~~g~~G~r~G~  281 (432)
T 3ei9_A          203 FFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPR-SIFEIPGAEEVAMETASFSNYAGFTGVRLGW  281 (432)
T ss_dssp             EEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCS-SGGGSTTGGGTEEEEEESHHHHCTTTTCCEE
T ss_pred             EEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCC-ChhhcCCCCCeEEEEecchhccCCcccceEE
Confidence            788999999999999999999999999999999999999998876433 343342 346799999999999999999999


Q ss_pred             EEeeCCC---CCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccc
Q 042445           91 LVTSDPN---GILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCP  166 (246)
Q Consensus        91 i~~~~~~---~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~  166 (246)
                      +++++..   ...   .+++.+..... .++++++++|.++..++......++++.++.++++++.+.+.|+++ ++. +
T Consensus       282 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~  356 (432)
T 3ei9_A          282 TVIPKKLLYSDGF---PVAKDFNRIICTCFNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSL-GYD-V  356 (432)
T ss_dssp             EECCTTCBCTTSC---BHHHHHHHHHHHSCCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCC-E
T ss_pred             EEEChHHhhcchH---HHHHHHHHHhccccCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHC-Cce-e
Confidence            9999821   000   12666665533 3446899999999999875445789999999999999999999988 676 4


Q ss_pred             cCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHHHHHHHHH
Q 042445          167 KKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       167 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l~~~~~~~  242 (246)
                      ..+.+++|+|+.++..      ++.+++..+++++||.+.||..|+.  ++++|+|+..+++++++++++|++.-+.+
T Consensus       357 ~~~~~~~~~~~~~~~~------~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis~~~~~e~l~~~l~rl~~~~~~~  428 (432)
T 3ei9_A          357 YGGKNAPYVWVHFPNQ------SSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVSAFGHRENILEACRRFKQLYKHH  428 (432)
T ss_dssp             EECSSSSEEEEECTTS------CHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHTTS
T ss_pred             cCCCcceEEEEECCCC------CHHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEEecCCHHHHHHHHHHHHHHhhhc
Confidence            5667899999988732      3677778888888999999999876  79999999889999999999999876544

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=100.00  E-value=2.9e-34  Score=246.58  Aligned_cols=222  Identities=19%  Similarity=0.277  Sum_probs=181.6

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC----------cccEEEEccccccc
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS----------IVPLLTLGSISKRG   81 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~----------~~~~i~~~s~sK~~   81 (246)
                      ++++||||||.++|.+++++|+++|++||+++|+||+|.++.+++..+.++..+..          .+++++++|+||.|
T Consensus       196 ~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~  275 (435)
T 3piu_A          196 LVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDL  275 (435)
T ss_dssp             EEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHHHC-------CGGGGEEEEEESSSSS
T ss_pred             EEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcCHHHhccccccccccCCCCCEEEEEeeeccc
Confidence            78899999999999999999999999999999999999998888766655544432          56889999999999


Q ss_pred             ccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhch--HHHHHHHHHHHHHHHHHHHHHhhc
Q 042445           82 IVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTE--EEFFSKIIDILRETADKCCDRLKE  159 (246)
Q Consensus        82 ~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~~L~~  159 (246)
                      |++|+|+||+++++.       .+.+.+......+ ..+++.|.++..++....  +.++++.++.++++++.+.+.|++
T Consensus       276 g~~G~r~G~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  347 (435)
T 3piu_A          276 GLPGFRVGAIYSNDD-------MVVAAATKMSSFG-LVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQK  347 (435)
T ss_dssp             CCGGGCEEEEEESCH-------HHHHHHHHHGGGS-CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCceeEEEEEeCCH-------HHHHHHHHHhhcC-CCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999652       6667776655443 779999999999998543  457888899999999999999998


Q ss_pred             CCCCccccCCCCceEEEEEeccccccCCC-ChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeec-ChHHHHHHHHHH
Q 042445          160 IPCITCPKKPEGSMFVMVKLNYSLLEGIN-SDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAV-EPSALENGLGRM  235 (246)
Q Consensus       160 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~-~~~~l~~~~~~l  235 (246)
                      . ++. +..+.+|+|+|++++........ +..+++..+++++||.+.||..|+.  ++++|++++. +++++++++++|
T Consensus       348 ~-g~~-~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~e~i~~~l~~l  425 (435)
T 3piu_A          348 S-GIS-CLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDLAMQRL  425 (435)
T ss_dssp             T-TCE-ECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECSSSCHHHHHHHHHHH
T ss_pred             c-CCc-ccCCCeeEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCcccCCCCCCEEEEEeeCCCHHHHHHHHHHH
Confidence            7 676 56788899999988753100000 1345666666666999999998865  7899999997 999999999999


Q ss_pred             HHHHHHHh
Q 042445          236 KAFYDRHA  243 (246)
Q Consensus       236 ~~~~~~~~  243 (246)
                      .+++++..
T Consensus       426 ~~~l~~~~  433 (435)
T 3piu_A          426 KAFVGEYY  433 (435)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHHh
Confidence            99998765

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=100.00  E-value=4.6e-34  Score=241.95  Aligned_cols=216  Identities=19%  Similarity=0.311  Sum_probs=181.1

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      ++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++.+. +...+  .+++++++|+||.++++|+|+||+
T Consensus       166 ~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~-~~~~~--~~~~i~~~s~sK~~g~~G~r~G~~  242 (391)
T 3h14_A          166 MVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAV-TALEL--TDECYVINSFSKYFSMTGWRVGWM  242 (391)
T ss_dssp             EEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCC-CGGGT--CSSSEEEEESSSTTCCTTSCCEEE
T ss_pred             EECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCc-Chhhc--CCCEEEEEechhccCCccceeEEE
Confidence            788999999999999999999999999999999999999999887533 32222  457899999999999999999999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCC
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPE  170 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~  170 (246)
                      ++++        ++++.+..... .+++++++.|.++.+++.  ...++++.++.++++++.+.+.|++++ +..+..|.
T Consensus       243 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~  311 (391)
T 3h14_A          243 VVPE--------DQVRVVERIAQNMFICAPHASQVAALAALD--CDAELQANLDVYKANRKLMLERLPKAG-FTRIAPPD  311 (391)
T ss_dssp             ECCG--------GGHHHHHHHHHHTTCCCCHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHHHHHT-CCCBCCCC
T ss_pred             EeCH--------HHHHHHHHHHhhhccCCCHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHHHHHHHcC-CCcccCCC
Confidence            9998        88888877644 345789999999988888  568899999999999999999999874 43346788


Q ss_pred             CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC---CCeEEEEeecChHHHHHHHHHHHHHHHHHhhc
Q 042445          171 GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFAVEPSALENGLGRMKAFYDRHAEK  245 (246)
Q Consensus       171 ~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~iRls~~~~~~~l~~~~~~l~~~~~~~~~~  245 (246)
                      +++++|++++...    .+..++...+++++||.+.||..|+.   ++++|++++.+++++++++++|.++++++...
T Consensus       312 ~~~~~~~~~~~~~----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~~~~~~~~  385 (391)
T 3h14_A          312 GAFYVYADVSDLT----DDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYARATADIEEGLDRLEAFMQARGEG  385 (391)
T ss_dssp             BTTEEEEECTTTC----SCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCSCHHHHHHHHHHHHHHHHHC---
T ss_pred             eeEEEEEecCccC----CCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHHhccc
Confidence            9999999886421    13566666667677999999999876   68999999998999999999999999887654

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=100.00  E-value=1.6e-34  Score=249.10  Aligned_cols=217  Identities=13%  Similarity=0.176  Sum_probs=180.2

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      ++++||||||.++|.+++++|+++|++||+++|+||+|.++.+++..+.++..++. .++++++.||||.||++|+|+||
T Consensus       214 ~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~  293 (449)
T 3qgu_A          214 FFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFTGVRLGW  293 (449)
T ss_dssp             EEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCTTCCCEE
T ss_pred             EEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCccceeEE
Confidence            77899999999999999999999999999999999999999988755556666644 56789999999999999999999


Q ss_pred             EEeeCCCCCcchhhHHH--------HHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 042445           91 LVTSDPNGILQDSGIVD--------SIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIP  161 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~--------~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  161 (246)
                      +++++        ++++        .+..... .+++++++.|.++..++......++++.++.++++++.+.+.|+++ 
T Consensus       294 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-  364 (449)
T 3qgu_A          294 TVVPK--------ALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEM-  364 (449)
T ss_dssp             EECCT--------TCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             EecCH--------HHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHC-
Confidence            99988        3332        3433322 3347899999999999986445789999999999999999999988 


Q ss_pred             CCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHHHHHH
Q 042445          162 CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKAFY  239 (246)
Q Consensus       162 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l~~~~  239 (246)
                      |+. +..|.+|+|+|+.++ ..     ++.+++..+++++||.+.||..|+.  ++++||++..+++++++++++|.+++
T Consensus       365 g~~-~~~~~~~~~~~~~~~-~~-----~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis~~~~~e~i~~~l~~l~~~~  437 (449)
T 3qgu_A          365 GFS-VYGGDDAPYIWVGFP-GK-----PSWDVFAEILERCNIVTTPGSGYGPAGEGFVRASAFGSRENILEAVRRFKEAY  437 (449)
T ss_dssp             TCC-EEESSSSSEEEEECT-TS-----CHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred             CCe-eeCCCCeeEEEEECC-CC-----CHHHHHHHHHHHCCEEEecchHhCCCCCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence            676 457788999999887 21     4667777777778999999998876  79999998889999999999999998


Q ss_pred             HHHhh
Q 042445          240 DRHAE  244 (246)
Q Consensus       240 ~~~~~  244 (246)
                      ++...
T Consensus       438 ~~~~~  442 (449)
T 3qgu_A          438 GKRNA  442 (449)
T ss_dssp             C----
T ss_pred             HhcCc
Confidence            76543

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=100.00  E-value=2.8e-34  Score=243.46  Aligned_cols=219  Identities=21%  Similarity=0.351  Sum_probs=181.1

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCC-CCccccc---cC-CcccEE
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNT-PFVSMGV---FG-SIVPLL   72 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~---~~-~~~~~i   72 (246)
                      +.+++.++++    ++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. +...+..   ++ ..++++
T Consensus       159 ~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  238 (396)
T 3jtx_A          159 RSISEEVWKRTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLL  238 (396)
T ss_dssp             GGSCHHHHHTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEE
T ss_pred             HHHHHhhccCcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEE
Confidence            3455555443    7789999999999999999999999999999999999999988763 2222211   11 256899


Q ss_pred             EEcccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 042445           73 TLGSISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETAD  151 (246)
Q Consensus        73 ~~~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~  151 (246)
                      ++.|+||.|+++|+|+||+++++        ++++.+..... .++++|++.|.++..++..  +.++++.++.++++++
T Consensus       239 ~~~s~sK~~~~~G~r~G~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~  308 (396)
T 3jtx_A          239 MFTSLSKRSNVPGLRSGFVAGDA--------ELLKNFLLYRTYHGSAMSIPVQRASIAAWDD--EQHVIDNRRLYQEKFE  308 (396)
T ss_dssp             EEEESTTTSSCGGGCCEEEEECH--------HHHHHHHHHHHHHTCCCCHHHHHHHHHHHHC--CHHHHHHHHHHHHHHH
T ss_pred             EEeccccccCCcccceEEEEeCH--------HHHHHHHHHHhhcccCCCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHH
Confidence            99999999999999999999988        89998887644 3457899999999999984  5788999999999999


Q ss_pred             HHHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--------CCeEEEEeec
Q 042445          152 KCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--------KDWLRITFAV  223 (246)
Q Consensus       152 ~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--------~~~iRls~~~  223 (246)
                      .+.+.|++.  +. +..|++|+|+|++++..      ++.+++..+++++||.+.||..|+.        ++++|++++.
T Consensus       309 ~l~~~l~~~--~~-~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~  379 (396)
T 3jtx_A          309 RVIPILQQV--FD-VKLPDASFYIWLKVPDG------DDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVA  379 (396)
T ss_dssp             HHHHHHTTT--SC-CCCCSSSSEEEEECTTS------CHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCS
T ss_pred             HHHHHHHhc--CC-ccCCCeeEEEEEECCCC------CHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcC
Confidence            999999885  22 45788999999988752      3667777777888999999998864        5899999999


Q ss_pred             ChHHHHHHHHHHHHHH
Q 042445          224 EPSALENGLGRMKAFY  239 (246)
Q Consensus       224 ~~~~l~~~~~~l~~~~  239 (246)
                      +++++++++++|.+++
T Consensus       380 ~~~~i~~~l~~l~~~l  395 (396)
T 3jtx_A          380 DVATCVKAAEDIVSLY  395 (396)
T ss_dssp             CHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            9999999999998864

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=100.00  E-value=7.1e-34  Score=240.43  Aligned_cols=229  Identities=16%  Similarity=0.181  Sum_probs=191.3

Q ss_pred             hhhhhhhc-cc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC--cccEEEE
Q 042445            2 ELINQDIT-RE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS--IVPLLTL   74 (246)
Q Consensus         2 e~~~~~~~-~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~--~~~~i~~   74 (246)
                      +.+++.++ ++    ++++||||||.++|.+++++|+++|++||+++|+||+|+++.+++..+.++..+..  .++++++
T Consensus       150 ~~l~~~l~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~  229 (391)
T 3dzz_A          150 ADLEEKLATPSVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSL  229 (391)
T ss_dssp             HHHHHHHTSTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEE
T ss_pred             HHHHHHHhccCceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEE
Confidence            45566665 33    78999999999999999999999999999999999999999988766666666543  5689999


Q ss_pred             cccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh--hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 042445           75 GSISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN--ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADK  152 (246)
Q Consensus        75 ~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~  152 (246)
                      .|+||.++++|+|+||+++++.       ++++.+.....  ..++++++.+.++..++.. .+.++++.++.++++++.
T Consensus       230 ~s~sK~~g~~G~r~G~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~  301 (391)
T 3dzz_A          230 ISPSKTFNLAALHAACAIIPNP-------DLRARAEESFFLAGIGEPNLLAIPAAIAAYEE-GHDWLRELKQVLRDNFAY  301 (391)
T ss_dssp             ECSHHHHTCTTTCCEEEECCSH-------HHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHH
T ss_pred             EeChhhccccchhheEEEECCH-------HHHHHHHHHHHhhccCCCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999842       88888876632  2347899999999999985 467899999999999999


Q ss_pred             HHHHhhc-CCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHH
Q 042445          153 CCDRLKE-IPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALE  229 (246)
Q Consensus       153 l~~~L~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~  229 (246)
                      +.+.|++ ++++. +..|.+++++|++++....    +..++...+++++||.+.||..|+.  ++++|++++.++++++
T Consensus       302 l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~i~  376 (391)
T 3dzz_A          302 AREFLAKEVPEVK-VLDSNASYLAWVDISALGM----NAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLACPKELVI  376 (391)
T ss_dssp             HHHHHHHHCTTSE-ECCCCBSSEEEEECGGGCS----CHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECCSCHHHHH
T ss_pred             HHHHHHhhCCCcE-EeccCceEEEEEehhhcCC----CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHH
Confidence            9999998 88887 5688999999998875311    3555655555689999999998876  5899999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 042445          230 NGLGRMKAFYDRHA  243 (246)
Q Consensus       230 ~~~~~l~~~~~~~~  243 (246)
                      +++++|.++++++.
T Consensus       377 ~~l~~l~~~l~~~~  390 (391)
T 3dzz_A          377 DGMQRLKQGVLNLN  390 (391)
T ss_dssp             HHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999987653

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=100.00  E-value=6.7e-34  Score=240.70  Aligned_cols=228  Identities=21%  Similarity=0.360  Sum_probs=185.9

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEcc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGS   76 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s   76 (246)
                      |.+++.++++    ++++||||||.++|.+++++|+++|++||+++|+||+|.++.+++..+.++..+.. .++++++.|
T Consensus       151 ~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s  230 (389)
T 1gd9_A          151 DELKKYVTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNG  230 (389)
T ss_dssp             HHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEE
T ss_pred             HHHHHhcCcCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEec
Confidence            3445555433    77899999999999999999999999999999999999999887653445555533 567899999


Q ss_pred             cccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHH
Q 042445           77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADKCC  154 (246)
Q Consensus        77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~  154 (246)
                      +||.|+++|+|+||+++++        ++++.+..... .+++++++.|.++..+|+... +.++++.++.++++++.+.
T Consensus       231 ~sK~~~~~G~r~G~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~  302 (389)
T 1gd9_A          231 FSKTFAMTGWRLGFVAAPS--------WIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVW  302 (389)
T ss_dssp             STTTTTCGGGCCEEEECCH--------HHHHHHHHHHTTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChhhcCCcccceEEEEECH--------HHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988        89998887644 344789999999999998532 2388999999999999999


Q ss_pred             HHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHH
Q 042445          155 DRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGL  232 (246)
Q Consensus       155 ~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~  232 (246)
                      +.|+++ ++. +..|.+|+++|++++...    .+..++...+++++||.+.||..|+.  ++++|++++.+++++++++
T Consensus       303 ~~L~~~-g~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~i~~~l  376 (389)
T 1gd9_A          303 KRLNEM-GLP-TVKPKGAFYIFPRIRDTG----LTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAM  376 (389)
T ss_dssp             HHHHHT-TCC-CCCCCBTTEECCBCGGGT----CCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHH
T ss_pred             HHHHHc-CCe-ecCCCeeeEEEEeccCCC----CCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHH
Confidence            999988 676 457888999998876411    13555555555589999999998874  7899999999999999999


Q ss_pred             HHHHHHHHHHh
Q 042445          233 GRMKAFYDRHA  243 (246)
Q Consensus       233 ~~l~~~~~~~~  243 (246)
                      ++|.+++++.+
T Consensus       377 ~~l~~~~~~~~  387 (389)
T 1gd9_A          377 DRMERVLKERK  387 (389)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHhcc
Confidence            99999987643

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=100.00  E-value=1.8e-34  Score=246.76  Aligned_cols=228  Identities=18%  Similarity=0.309  Sum_probs=189.2

Q ss_pred             hhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEccc
Q 042445            3 LINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGSI   77 (246)
Q Consensus         3 ~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~   77 (246)
                      .+++.++++    ++++||||||.++|.+++++|+++|++||+++|+||+|.++.+++..+.++..+.. .++++++.|+
T Consensus       166 ~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~  245 (422)
T 3fvs_A          166 ELAGKFTSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSA  245 (422)
T ss_dssp             HHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEH
T ss_pred             HHHhhcCCCceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecc
Confidence            344444433    78899999999999999999999999999999999999999998766666666643 5789999999


Q ss_pred             ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhc------hHHHHHHHHHHHHHHH
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKT------EEEFFSKIIDILRETA  150 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~------~~~~~~~~~~~~~~~~  150 (246)
                      ||.|+++|+|+||+++++        ++++.+..... ..++++++.|.++..++...      .+.++++.++.+++++
T Consensus       246 sK~~g~~G~r~G~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  317 (422)
T 3fvs_A          246 GKTFSATGWKVGWVLGPD--------HIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCR  317 (422)
T ss_dssp             HHHHTCGGGCCEEEECCH--------HHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHH
T ss_pred             hhccCCccceEEEEEeCH--------HHHHHHHHHHhhccCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHH
Confidence            999999999999999998        89998877643 34478999999999999741      2567899999999999


Q ss_pred             HHHHHHhhcCCCCccccCCCCceEEEEEeccccccCCCC---------hHHHHHHHHHhcCeEEecCCCcCC-------C
Q 042445          151 DKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINS---------DMEFALKLAKEESVIVLPGITVGL-------K  214 (246)
Q Consensus       151 ~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---------~~~~~~~ll~~~gi~v~pg~~f~~-------~  214 (246)
                      +.+.+.|+++ ++. +..|++|+|+|++++.... +..+         +.+++..+++++||.+.||..|+.       .
T Consensus       318 ~~l~~~L~~~-g~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~  394 (422)
T 3fvs_A          318 DHMIRSLQSV-GLK-PIIPQGSYFLITDISDFKR-KMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFD  394 (422)
T ss_dssp             HHHHHHHHTT-TCE-EEBCSBSSEEEEECHHHHH-HCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSC
T ss_pred             HHHHHHHHHc-CCe-ecCCCeeeEEEEechhhcc-cccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCC
Confidence            9999999988 676 4678999999998864210 0000         446777778889999999998853       6


Q ss_pred             CeEEEEeecChHHHHHHHHHHHHHHHH
Q 042445          215 DWLRITFAVEPSALENGLGRMKAFYDR  241 (246)
Q Consensus       215 ~~iRls~~~~~~~l~~~~~~l~~~~~~  241 (246)
                      +++|++++.+++++++++++|.+++++
T Consensus       395 ~~iRis~~~~~e~i~~~l~~l~~~l~~  421 (422)
T 3fvs_A          395 HYIRFCFVKDEATLQAMDEKLRKWKVE  421 (422)
T ss_dssp             SEEEEECCCCHHHHHHHHHHHHHHHHC
T ss_pred             CeEEEEecCCHHHHHHHHHHHHHHHhh
Confidence            899999999999999999999998864

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=100.00  E-value=4.2e-34  Score=241.03  Aligned_cols=220  Identities=20%  Similarity=0.291  Sum_probs=179.0

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      |.+++.++++    ++++||||||.++|.+++++|+++|++||+++|+||+|.++.+++.....+...+..++++++.|+
T Consensus       149 ~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~  228 (376)
T 2dou_A          149 KAVPEGVWREAKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSL  228 (376)
T ss_dssp             GGSCHHHHHHEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEH
T ss_pred             HHHHHhhccCceEEEECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecc
Confidence            3455554332    778999999999999999999999999999999999999998876333233333445688999999


Q ss_pred             ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDR  156 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  156 (246)
                      ||.|+++|+|+||+++++        ++++.+..... .++++|++.|.++..+++.. +.++++.++.++++++.+.+.
T Consensus       229 sK~~~~~G~r~G~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~  299 (376)
T 2dou_A          229 SKSYNLAGFRLGFALGSE--------EALARLERVKGVIDFNQYAGVLRMGVEALKTP-KEVVRGYARVYRERALGMAEA  299 (376)
T ss_dssp             HHHHTCGGGCCEEEEECH--------HHHHHHHHHHHHHCCCSCHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcCChhheeEEEecCH--------HHHHHHHHHHHhcccCCCHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988        89998887644 34478999999999999853 678999999999999999999


Q ss_pred             hhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHH
Q 042445          157 LKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGR  234 (246)
Q Consensus       157 L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~  234 (246)
                      |+++  +. +..|.+|+|+|++++...     +..++... |.++||.+.||..|+.  ++++|++++.+++++++++++
T Consensus       300 L~~~--~~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~-l~~~gi~v~~g~~f~~~~~~~~Ris~~~~~~~i~~~l~~  370 (376)
T 2dou_A          300 LKGV--LS-LLPPRATMYLWGRLPEGV-----DDLEFGLR-LVERGVALAPGRGFGPGGKGFVRIALVRPLEELLEAAKR  370 (376)
T ss_dssp             HTTT--SE-ECCCCBSSEEEEECCTTC-----CHHHHHHH-HHHTTEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHH
T ss_pred             HHHh--cC-ccCCCeeEEEEEECCCCC-----CHHHHHHH-HHHCCEEEcCchhhCCCCCCeEEEEecCCHHHHHHHHHH
Confidence            9886  54 456788999999886431     34555554 5566999999998874  689999999888999999999


Q ss_pred             HHHHH
Q 042445          235 MKAFY  239 (246)
Q Consensus       235 l~~~~  239 (246)
                      |.+++
T Consensus       371 l~~~l  375 (376)
T 2dou_A          371 IREAL  375 (376)
T ss_dssp             HHHTC
T ss_pred             HHHHh
Confidence            98764

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-34  Score=249.03  Aligned_cols=226  Identities=21%  Similarity=0.335  Sum_probs=182.9

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCcccccc--CCcccEEEEc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVF--GSIVPLLTLG   75 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~--~~~~~~i~~~   75 (246)
                      |.+++.++++    ++++||||||.++|.+++++|+++|++||+++|+||+|.++.+++ .+.++..+  +..++++++.
T Consensus       192 ~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~~i~i~  270 (447)
T 3b46_A          192 EQFEKAITSKTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTD-SFTRIATLSPEIGQLTLTVG  270 (447)
T ss_dssp             HHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSS-CCCCGGGSCHHHHTTEEEEE
T ss_pred             HHHHHhhccCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCC-CCcCHHHcCCCCCCcEEEEe
Confidence            3455555433    778999999999999999999999999999999999999999876 33444444  2346899999


Q ss_pred             ccccccccCCceEEEEEe-eCCCCCcchhhHHHHHHHHh-hhcCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHH
Q 042445           76 SISKRGIVPGLRLGWLVT-SDPNGILQDSGIVDSIKIFL-NISSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADK  152 (246)
Q Consensus        76 s~sK~~~~~g~r~G~i~~-~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~  152 (246)
                      |+||.|+++|+|+||+++ ++        ++++.+.... ..+++.+++.|.++..+|+... +.++++.++.++++++.
T Consensus       271 S~sK~~~~~G~riG~~~~~~~--------~l~~~l~~~~~~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~  342 (447)
T 3b46_A          271 SAGKSFAATGWRIGWVLSLNA--------ELLSYAAKAHTRICFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKI  342 (447)
T ss_dssp             EHHHHTTCTTSCCEEEECSCH--------HHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             cCchhcCCcchhhEEEEeCCH--------HHHHHHHHHHhhccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHH
Confidence            999999999999999999 77        8888887653 3445789999999999998643 56789999999999999


Q ss_pred             HHHHhhcCCCCccccCCCCceEEEEEeccccccC----------CCChHHHHHHHHHhcCeEEecCCCcCC-------CC
Q 042445          153 CCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEG----------INSDMEFALKLAKEESVIVLPGITVGL-------KD  215 (246)
Q Consensus       153 l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----------~~~~~~~~~~ll~~~gi~v~pg~~f~~-------~~  215 (246)
                      +.+.|+++ |+. +..|.+|+|+|++++....+.          ..++.+++..+++++||.+.||..|+.       .+
T Consensus       343 l~~~L~~~-g~~-~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~  420 (447)
T 3b46_A          343 FTSIFDEL-GLP-YTAPEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAEN  420 (447)
T ss_dssp             HHHHHHHH-TCC-EECCSBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTT
T ss_pred             HHHHHHHC-CCe-ecCCCeeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCC
Confidence            99999987 666 467899999999886421100          013446666666789999999988864       58


Q ss_pred             eEEEEeecChHHHHHHHHHHHHH
Q 042445          216 WLRITFAVEPSALENGLGRMKAF  238 (246)
Q Consensus       216 ~iRls~~~~~~~l~~~~~~l~~~  238 (246)
                      ++|++++.+++++++++++|.++
T Consensus       421 ~iRls~~~~~e~l~~~~~~l~~~  443 (447)
T 3b46_A          421 LLRFAVCKDDAYLENAVERLKLL  443 (447)
T ss_dssp             EEEEECCSCHHHHHHHHHHGGGG
T ss_pred             EEEEEEeCCHHHHHHHHHHHHHH
Confidence            99999999999999999999873

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=100.00  E-value=5.2e-34  Score=244.38  Aligned_cols=216  Identities=19%  Similarity=0.274  Sum_probs=180.5

Q ss_pred             ccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEE
Q 042445           13 SDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLV   92 (246)
Q Consensus        13 ~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~   92 (246)
                      +++||||||.++|.+++++|+++|+++|+++|+||+|.++.+++..+.++..++..++++++.|+||.|+ +|+|+||++
T Consensus       194 ~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~~  272 (425)
T 1vp4_A          194 VSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLA-PGLRIGMVA  272 (425)
T ss_dssp             ECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTC-GGGCEEEEE
T ss_pred             CCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEeccccccc-cccceEEEe
Confidence            6899999999999999999999999999999999999999987655556655655568999999999998 999999999


Q ss_pred             eeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhhc-CC---CCccc
Q 042445           93 TSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADKCCDRLKE-IP---CITCP  166 (246)
Q Consensus        93 ~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~-~~---~~~~~  166 (246)
                      +++        ++++.+..... .++++|++.|.++..+|+... +.++++.++.++++++.+.+.|++ .+   ++. +
T Consensus       273 ~~~--------~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~-~  343 (425)
T 1vp4_A          273 GSK--------EFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVK-W  343 (425)
T ss_dssp             CCH--------HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCE-E
T ss_pred             eCH--------HHHHHHHHHhhhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceE-E
Confidence            998        89988876633 344779999999999998642 678899999999999999999987 45   466 4


Q ss_pred             cCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC----CCeEEEEeec-ChHHHHHHHHHHHHHHHH
Q 042445          167 KKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL----KDWLRITFAV-EPSALENGLGRMKAFYDR  241 (246)
Q Consensus       167 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----~~~iRls~~~-~~~~l~~~~~~l~~~~~~  241 (246)
                      ..|++|+|+|++++...     +..++... |.++||.+.||..|+.    ++++|++++. +++++++++++|.+++++
T Consensus       344 ~~~~~g~~~~~~~~~~~-----~~~~l~~~-l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~~~e~i~~~l~~l~~~l~~  417 (425)
T 1vp4_A          344 VKSEGGLFIWLTLPEGF-----DTWEMFEY-AKRKKVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKRLREVVLE  417 (425)
T ss_dssp             CCCSBSSEEEEECCTTC-----CTTTTHHH-HHHHTEECEEGGGGCTTCCCCSEEEEECSSSCHHHHHHHHHHHHHHHHH
T ss_pred             ecCCccEEEEEEcCCCC-----CHHHHHHH-HHHCCCEEECchhhcCCCCCCCeEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence            57889999999887421     23445454 4456999999988853    6899999997 789999999999999987


Q ss_pred             Hhh
Q 042445          242 HAE  244 (246)
Q Consensus       242 ~~~  244 (246)
                      ..+
T Consensus       418 ~~~  420 (425)
T 1vp4_A          418 YGK  420 (425)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            654

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=100.00  E-value=7.6e-34  Score=243.18  Aligned_cols=226  Identities=15%  Similarity=0.138  Sum_probs=180.7

Q ss_pred             hhhhhhhcc---c--c-ccCCcCCCccCCChhhHHHHHHHHH-HcCCEEEEccccCC--cccCCCCCccccc----cCCc
Q 042445            2 ELINQDITR---E--F-SDFQVFHVGSGFSGSFVSPIAETAK-KLGIMVIANEVYGH--LAFGNTPFVSMGV----FGSI   68 (246)
Q Consensus         2 e~~~~~~~~---~--~-~~~p~NPtG~~~~~~~~~~l~~~~~-~~~~~ii~De~y~~--~~~~~~~~~~~~~----~~~~   68 (246)
                      |.+++.+++   +  + +++||||||.++|.+++++|+++|+ +||+++|+||+|.+  +..++..+.++..    .+..
T Consensus       168 ~~l~~~l~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~  247 (422)
T 3d6k_A          168 GVVRELVKDPQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNP  247 (422)
T ss_dssp             HHHHHHHTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCT
T ss_pred             HHHHHHHhcCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhHhhccCCC
Confidence            445555543   2  4 6899999999999999999999999 99999999999986  4433333334422    3455


Q ss_pred             ccEEEEcccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhh-ch-HHHHHHHHHH
Q 042445           69 VPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEK-TE-EEFFSKIIDI  145 (246)
Q Consensus        69 ~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~-~~-~~~~~~~~~~  145 (246)
                      +++++++||||. +++|+|+||+++++        ++++.+..... .+.++|++.|.++..++++ +. +.++++.++.
T Consensus       248 ~~~i~~~S~SK~-~~~GlriG~~~~~~--------~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~  318 (422)
T 3d6k_A          248 NRFWFMSSTSKI-THAGSGVSFFASSK--------ENIEWYASHANVRGIGPNKLNQLAHAQFFGDVAGLKAHMLKHAAS  318 (422)
T ss_dssp             TCEEEEEESTTT-SCTTSSCEEEECCH--------HHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHH
T ss_pred             CcEEEEcChhhh-cCcccceEEEEeCH--------HHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence            689999999999 89999999999998        99998887644 4457899999999999986 22 5788999999


Q ss_pred             HHHHHHHHHHHhhc-CC---CCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEec-CCCcC-----CCC
Q 042445          146 LRETADKCCDRLKE-IP---CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLP-GITVG-----LKD  215 (246)
Q Consensus       146 ~~~~~~~l~~~L~~-~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p-g~~f~-----~~~  215 (246)
                      ++++++.+.+.|++ ++   ++. +..|++|+|+|++++..       +.+.+..++.++||.+.| |..|.     .++
T Consensus       319 ~~~~~~~l~~~L~~~l~~~~~~~-~~~p~~g~~~~~~~~~~-------~~~~~~~~l~~~gV~v~~~g~~f~~~~~~~~~  390 (422)
T 3d6k_A          319 LAPKFERVLEILDSRLSEYGVAK-WTSPTGGYFISVDVVPG-------TASRVVELAKEAGIALTGAGSSFPLHNDPNNE  390 (422)
T ss_dssp             HHHHHHHHHHHHHHHHGGGTCEE-ECCCSBSSCEEEEESTT-------CHHHHHHHHHHTTEECCCTTTTSGGGCCTTSC
T ss_pred             HHHHHHHHHHHHHHhcCcCCceE-EeCCCcceEEEEECCCC-------CHHHHHHHHHHCCeEEEcCccccCCCCCCCCC
Confidence            99999999988865 32   344 46788999999998742       244556788899999999 55563     268


Q ss_pred             eEEEEee-cChHHHHHHHHHHHHHHHHHhh
Q 042445          216 WLRITFA-VEPSALENGLGRMKAFYDRHAE  244 (246)
Q Consensus       216 ~iRls~~-~~~~~l~~~~~~l~~~~~~~~~  244 (246)
                      ++|+|++ .+++++++++++|.+++++..+
T Consensus       391 ~iRis~~~~~~e~i~~~~~~l~~~l~~~~~  420 (422)
T 3d6k_A          391 NIRLAPSLPPVAELEVAMDGFATCVLMAAL  420 (422)
T ss_dssp             EEEECCSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            9999999 4999999999999999987654

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=100.00  E-value=1.5e-33  Score=239.37  Aligned_cols=227  Identities=21%  Similarity=0.286  Sum_probs=184.8

Q ss_pred             hhhhhhhcc-c-----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCc---ccEE
Q 042445            2 ELINQDITR-E-----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSI---VPLL   72 (246)
Q Consensus         2 e~~~~~~~~-~-----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~---~~~i   72 (246)
                      |.+++.+++ +     ++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++..+.++..++..   ++++
T Consensus       152 ~~l~~~l~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i  231 (397)
T 2zyj_A          152 DALEEVLKRERPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVI  231 (397)
T ss_dssp             HHHHHHHHHCCCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEE
T ss_pred             HHHHHHHhhcCCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEE
Confidence            345555543 2     368999999999999999999999999999999999999999876555555555544   6899


Q ss_pred             EEcccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 042445           73 TLGSISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETAD  151 (246)
Q Consensus        73 ~~~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~  151 (246)
                      ++.|+||.|+ +|+|+||+++++        ++++.+..... .+++.|++.|.++..+|+.....++++.++.++++++
T Consensus       232 ~~~s~sK~~~-~G~r~G~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~  302 (397)
T 2zyj_A          232 YLGSFSKVLS-PGLRVAFAVAHP--------EALQKLVQAKQGADLHTPMLNQMLVHELLKEGFSERLERVRRVYREKAQ  302 (397)
T ss_dssp             EEEESTTTTC-GGGCCEEEECCH--------HHHHHHHHHHHHHHSSCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred             EEeccccccc-ccceeEEEecCH--------HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            9999999998 999999999998        88988876633 3446799999999999986422678899999999999


Q ss_pred             HHHHHhhc-CC-CCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcC----CCCeEEEEeec-C
Q 042445          152 KCCDRLKE-IP-CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG----LKDWLRITFAV-E  224 (246)
Q Consensus       152 ~l~~~L~~-~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~----~~~~iRls~~~-~  224 (246)
                      .+.+.|++ +| ++. +..|.+|+|+|++++...     +..++. +.|.++||.+.||..|+    .++++|++++. +
T Consensus       303 ~l~~~L~~~~~~g~~-~~~~~~g~~~~~~~~~~~-----~~~~~~-~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~~  375 (397)
T 2zyj_A          303 AMLHALDREVPKEVR-YTRPKGGMFVWMELPKGL-----SAEGLF-RRALEENVAFVPGGPFFANGGGENTLRLSYATLD  375 (397)
T ss_dssp             HHHHHHHHHSCTTSE-ECCCSBSSEEEEECSTTC-----CHHHHH-HHHHHTTEEEEESGGGCTTSCCTTEEEEECSSSC
T ss_pred             HHHHHHHHHCCCCeE-EccCCccEEEEEEcCCCC-----CHHHHH-HHHHHCCCEEechHHhcCCCCCCCeEEEEcCCCC
Confidence            99999987 67 576 457889999999886421     244554 45556799999998885    36899999997 7


Q ss_pred             hHHHHHHHHHHHHHHHHHhh
Q 042445          225 PSALENGLGRMKAFYDRHAE  244 (246)
Q Consensus       225 ~~~l~~~~~~l~~~~~~~~~  244 (246)
                      ++++++++++|.+++++..+
T Consensus       376 ~~~i~~~~~~l~~~l~~~~~  395 (397)
T 2zyj_A          376 REGIAEGVRRLGRALKGLLA  395 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999987654

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=100.00  E-value=7.3e-34  Score=239.37  Aligned_cols=224  Identities=21%  Similarity=0.337  Sum_probs=187.3

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.++++    ++++||||||.+++.+++++|.++|++||+++|+||+|.++.++  +..+..  +..+++++++||
T Consensus       145 ~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~--~~~~~~--~~~~~~i~~~s~  220 (375)
T 3op7_A          145 EKLRQLIRPTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSEL--DVPSII--EVYDKGIAVNSL  220 (375)
T ss_dssp             HHHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSS--CCCCHH--HHCTTEEEEEES
T ss_pred             HHHHHhhccCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccc--CCCchh--hhcCCEEEEeEC
Confidence            4455555543    88899999999999999999999999999999999999998876  222222  224578999999


Q ss_pred             ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDR  156 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  156 (246)
                      ||.++++|+|+||+++++        ++++.+..... .+.+++++.+.++..++.. .+.++++.++.++++++.+.+.
T Consensus       221 sK~~~~~G~r~G~v~~~~--------~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~  291 (375)
T 3op7_A          221 SKTYSLPGIRIGWVAANH--------QVTDILRDYRDYTMICAGVFDDLVAQLALAH-YQEILERNRHILEENLAILDQW  291 (375)
T ss_dssp             SSSSSCGGGCCEEEECCH--------HHHHHHTTTGGGTTSCCCHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcCCcccceEEEEeCH--------HHHHHHHHHHhhhccCCCcHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999977        89998887644 3447789999999888884 4678899999999999999999


Q ss_pred             hhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHH
Q 042445          157 LKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMK  236 (246)
Q Consensus       157 L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~  236 (246)
                      |++.+++. +..|.+++++|+.++...     +..+++..+++++||.+.||..|+.++++|++++.+.+++++++++|.
T Consensus       292 l~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~ll~~~gi~v~~g~~~~~~~~iRi~~~~~~~~i~~~l~~l~  365 (375)
T 3op7_A          292 IEEEPLVS-YIRPAVVSTSFVKIAVDM-----PMEDFCLQLLQEHGVLLVPGNRFERDGYVRLGFACEQETLIKGLEKLS  365 (375)
T ss_dssp             HHHCTTEE-ECCCSSSSCEEEEECCSS-----CHHHHHHHHHHHHCEECEEGGGGTCTTEEEECCCSCHHHHHHHHHHHH
T ss_pred             HhhCCCce-EecCCCeEEEeEEcCCCC-----CHHHHHHHHHHhCCEEEeChhhhCCCCeEEEEecCCHHHHHHHHHHHH
Confidence            99887777 568889999999887532     466777777789999999999998899999999988899999999999


Q ss_pred             HHHHHHhh
Q 042445          237 AFYDRHAE  244 (246)
Q Consensus       237 ~~~~~~~~  244 (246)
                      ++++++.+
T Consensus       366 ~~l~~~~~  373 (375)
T 3op7_A          366 QFLRRFDK  373 (375)
T ss_dssp             HHHGGGC-
T ss_pred             HHHHHHhh
Confidence            99987654

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=100.00  E-value=4.4e-34  Score=243.35  Aligned_cols=224  Identities=18%  Similarity=0.288  Sum_probs=185.6

Q ss_pred             hhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccC-CcccEEEEccc
Q 042445            3 LINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFG-SIVPLLTLGSI   77 (246)
Q Consensus         3 ~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~~~i~~~s~   77 (246)
                      .+++.++++    ++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++..+.++..+. ..++++++.|+
T Consensus       159 ~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~  238 (410)
T 3e2y_A          159 ELESKFSSKTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSA  238 (410)
T ss_dssp             HHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEH
T ss_pred             HHHhhcCCCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecc
Confidence            444444443    7889999999999999999999999999999999999999999876665665554 35789999999


Q ss_pred             ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhh------chHHHHHHHHHHHHHHH
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEK------TEEEFFSKIIDILRETA  150 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~------~~~~~~~~~~~~~~~~~  150 (246)
                      ||.|+++|+|+||+++++        ++++.+..... .+++++++.|.++..++..      ....++++.++.+++++
T Consensus       239 sK~~g~~G~r~G~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  310 (410)
T 3e2y_A          239 GKTFSVTGWKLGWSIGPA--------HLIKHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKR  310 (410)
T ss_dssp             HHHSSCGGGCCEEEECCH--------HHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHH
T ss_pred             hhhcCCCCceEEEEEECH--------HHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHH
Confidence            999999999999999998        89998887643 3457899999999999974      23568899999999999


Q ss_pred             HHHHHHhhcCCCCccccCCCCceEEEEEeccccccCC-------CChHHHHHHHHHhcCeEEecCCCcCC-------CCe
Q 042445          151 DKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGI-------NSDMEFALKLAKEESVIVLPGITVGL-------KDW  216 (246)
Q Consensus       151 ~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-------~~~~~~~~~ll~~~gi~v~pg~~f~~-------~~~  216 (246)
                      +.+.+.|+++ ++. +..|++|+|+|+++..... +.       .++.+++..+++++||.+.||..|+.       .++
T Consensus       311 ~~l~~~L~~~-g~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~  387 (410)
T 3e2y_A          311 DRMVRLLNSV-GLK-PIVPDGGYFIIADVSSLGA-DLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKL  387 (410)
T ss_dssp             HHHHHHHHTT-TCE-EEBCSBSSEEEEECGGGCC-CCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTE
T ss_pred             HHHHHHHHHC-CCe-ecCCCccEEEEEEchhhhc-ccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCE
Confidence            9999999988 676 4678999999998864210 11       01347777788899999999998863       589


Q ss_pred             EEEEeecChHHHHHHHHHHHH
Q 042445          217 LRITFAVEPSALENGLGRMKA  237 (246)
Q Consensus       217 iRls~~~~~~~l~~~~~~l~~  237 (246)
                      +|++++.+++++++++++|.+
T Consensus       388 iRis~~~~~e~l~~~l~~l~~  408 (410)
T 3e2y_A          388 VRFCFIKKDSTLDAAEEIFRA  408 (410)
T ss_dssp             EEEECCCCHHHHHHHHHHHHT
T ss_pred             EEEEEcCCHHHHHHHHHHHHh
Confidence            999999999999999999875

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=100.00  E-value=1.6e-33  Score=241.43  Aligned_cols=221  Identities=18%  Similarity=0.289  Sum_probs=177.0

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC--------cccEEEEccccccccc
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS--------IVPLLTLGSISKRGIV   83 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~--------~~~~i~~~s~sK~~~~   83 (246)
                      ++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++..+.++..+..        .++++++.|+||.||+
T Consensus       193 ~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~  272 (428)
T 1iay_A          193 ILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGL  272 (428)
T ss_dssp             EEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSC
T ss_pred             EEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhccccccccCCCCcEEEEecchhhcCC
Confidence            77899999999999999999999999999999999999998887654444444432        4789999999999999


Q ss_pred             CCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhch--HHHHHHHHHHHHHHHHHHHHHhhcCC
Q 042445           84 PGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTE--EEFFSKIIDILRETADKCCDRLKEIP  161 (246)
Q Consensus        84 ~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~  161 (246)
                      +|+|+||+++++.       ++++.+......+ ++|+++|.++..+++...  +.++++.++.++++++.+.+.|+++ 
T Consensus       273 ~Glr~G~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-  343 (428)
T 1iay_A          273 PGFRVGIIYSFND-------DVVNCARKMSSFG-LVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV-  343 (428)
T ss_dssp             GGGCEEEEEESCH-------HHHHHHHHHHTTS-CCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             CCceEEEEEeCCH-------HHHHHHHHHHhcc-cCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence            9999999999542       7888887665443 789999999999998643  3578899999999999999999988 


Q ss_pred             CCccccCCCCceEEEEEeccccccCC-CChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEee-cChHHHHHHHHHHHH
Q 042445          162 CITCPKKPEGSMFVMVKLNYSLLEGI-NSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFA-VEPSALENGLGRMKA  237 (246)
Q Consensus       162 ~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~-~~~~~l~~~~~~l~~  237 (246)
                      ++. +..+.+|+|+|++++....... .+..++...+++++||.+.||..|+.  ++++|++++ .+++++++++++|.+
T Consensus       344 g~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~iRis~~~~~~e~i~~~~~~l~~  422 (428)
T 1iay_A          344 GIK-CLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGTVDIALARIRR  422 (428)
T ss_dssp             TCC-BCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECSSSCHHHHHHHHHHHHH
T ss_pred             CCc-ccCCCeeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEecCCHHHHHHHHHHHHH
Confidence            666 4567789999998864210000 01234445444456999999988865  689999999 699999999999999


Q ss_pred             HHHHH
Q 042445          238 FYDRH  242 (246)
Q Consensus       238 ~~~~~  242 (246)
                      ++++.
T Consensus       423 ~l~~~  427 (428)
T 1iay_A          423 FVGVE  427 (428)
T ss_dssp             HHHTT
T ss_pred             HHhcc
Confidence            98653

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=100.00  E-value=5.4e-34  Score=241.15  Aligned_cols=222  Identities=19%  Similarity=0.243  Sum_probs=181.8

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccC-CcccEEEEcc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFG-SIVPLLTLGS   76 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~~~i~~~s   76 (246)
                      |.+++.+.++    ++++||||||.++|.+++++|+++|++||+++|+||+|.++.+++.++.++..+. ..++++++.|
T Consensus       154 ~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s  233 (386)
T 1u08_A          154 QEFAALLSERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSS  233 (386)
T ss_dssp             HHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEE
T ss_pred             HHHHHhhcccCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEec
Confidence            3455555433    7789999999999999999999999999999999999999998765555554443 3468899999


Q ss_pred             cccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445           77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD  155 (246)
Q Consensus        77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  155 (246)
                      +||.|+++|+|+||+++++        ++++.+..... ..++++++.|.++..+|+.. +.++++.++.++++++.+.+
T Consensus       234 ~sK~~~~~G~r~G~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~  304 (386)
T 1u08_A          234 FGKTYHMTGWKVGYCVAPA--------PISAEIRKVHQYLTFSVNTPAQLALADMLRAE-PEHYLALPDFYRQKRDILVN  304 (386)
T ss_dssp             HHHHTTCGGGCCEEEECCH--------HHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHC-THHHHTHHHHHHHHHHHHHH
T ss_pred             chhhcCCcccceEEEEcCH--------HHHHHHHHHHHhhccCCChHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988        88888877643 34478899999999999854 67889999999999999999


Q ss_pred             HhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcC----CCCeEEEEeecChHHHHHH
Q 042445          156 RLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG----LKDWLRITFAVEPSALENG  231 (246)
Q Consensus       156 ~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~----~~~~iRls~~~~~~~l~~~  231 (246)
                      .|+++ ++. +..|.+|+|+|++++...   ..+..++...+++++||.+.||..|+    .++++|++++.++++++++
T Consensus       305 ~L~~~-g~~-~~~~~~g~~~~~~~~~~~---~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~~~~~~i~~~  379 (386)
T 1u08_A          305 ALNES-RLE-ILPCEGTYFLLVDYSAVS---TLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAA  379 (386)
T ss_dssp             HTTSS-SCE-ECCCCBSSEEEEECTTTC---CSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCSCHHHHHHH
T ss_pred             HHHHC-CCe-ecCCCceEEEEEecCCCC---CCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEcCCHHHHHHH
Confidence            99987 676 467888999999886420   01355666666678999999998875    3689999999889999999


Q ss_pred             HHHHHH
Q 042445          232 LGRMKA  237 (246)
Q Consensus       232 ~~~l~~  237 (246)
                      +++|.+
T Consensus       380 ~~~l~~  385 (386)
T 1u08_A          380 AERLRQ  385 (386)
T ss_dssp             HHHHTT
T ss_pred             HHHHhh
Confidence            998864

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=100.00  E-value=6.3e-34  Score=243.98  Aligned_cols=228  Identities=18%  Similarity=0.283  Sum_probs=184.4

Q ss_pred             hhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccC-CcccEEEEccc
Q 042445            3 LINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFG-SIVPLLTLGSI   77 (246)
Q Consensus         3 ~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~~~i~~~s~   77 (246)
                      .+++.++++    ++++||||||.++|.+++++|+++|++||+++|+||+|.++.+++.++.++..+. ..++++++.|+
T Consensus       174 ~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~  253 (429)
T 1yiz_A          174 ELEALFNEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSA  253 (429)
T ss_dssp             HHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEH
T ss_pred             HHHHHhccCceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecc
Confidence            445555433    7789999999999999999999999999999999999999998776555655553 45689999999


Q ss_pred             ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhh-----ch-HHHHHHHHHHHHHHH
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEK-----TE-EEFFSKIIDILRETA  150 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~-----~~-~~~~~~~~~~~~~~~  150 (246)
                      ||.|+++|+|+||+++++        ++++.+..... .+++++++.|.++..+|+.     .. +.++++.++.+++++
T Consensus       254 sK~~~~~G~r~G~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  325 (429)
T 1yiz_A          254 GKTFSLTGWKIGWAYGPE--------ALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKR  325 (429)
T ss_dssp             HHHHTCGGGCCEEEESCH--------HHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHH
T ss_pred             hhccCCCCcceEEEEeCH--------HHHHHHHHHHhhcccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHH
Confidence            999999999999999988        88888876643 3457899999999999986     32 567899999999999


Q ss_pred             HHHHHHhhcCCCCccccCCCCceEEEEEeccccc-------cCCCChHHHHHHHHHhcCeEEecCCCcCC-------CCe
Q 042445          151 DKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLL-------EGINSDMEFALKLAKEESVIVLPGITVGL-------KDW  216 (246)
Q Consensus       151 ~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~-------~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-------~~~  216 (246)
                      +.+.+.|+++ ++. +..|.+|+|+|++++....       ++..+..+++..+++++||.+.||..|+.       +++
T Consensus       326 ~~l~~~L~~~-g~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~  403 (429)
T 1yiz_A          326 DYMASFLAEV-GMN-PTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDF  403 (429)
T ss_dssp             HHHHHHHHHH-TCE-EEECSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTE
T ss_pred             HHHHHHHHhC-CCc-ccCCCcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCe
Confidence            9999999887 666 4567889999998874210       00012445555566689999999988763       689


Q ss_pred             EEEEeecChHHHHHHHHHHHHHHH
Q 042445          217 LRITFAVEPSALENGLGRMKAFYD  240 (246)
Q Consensus       217 iRls~~~~~~~l~~~~~~l~~~~~  240 (246)
                      +|++++.+++++++++++|.++++
T Consensus       404 iRis~~~~~e~i~~~l~~l~~~l~  427 (429)
T 1yiz_A          404 VRYCFFKKDENLQKAAEILRKWKG  427 (429)
T ss_dssp             EEEECCSCHHHHHHHHHHHHHHSC
T ss_pred             EEEEecCCHHHHHHHHHHHHHhcc
Confidence            999999999999999999998764

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=100.00  E-value=3.6e-33  Score=236.11  Aligned_cols=215  Identities=19%  Similarity=0.242  Sum_probs=181.1

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC--cccEEEEcccccccccCCceEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS--IVPLLTLGSISKRGIVPGLRLG   89 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~--~~~~i~~~s~sK~~~~~g~r~G   89 (246)
                      ++++||||||.++|.+++++|+++|++||+++|+||+|.++.+++..+.++..+..  .++++++.|+||.++++|+|+|
T Consensus       169 ~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G  248 (391)
T 4dq6_A          169 ILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTFNIAGLQSS  248 (391)
T ss_dssp             EEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHTCGGGCCE
T ss_pred             EEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhccCcccceE
Confidence            78899999999999999999999999999999999999999988766666666654  4789999999999999999999


Q ss_pred             EEEeeCCCCCcchhhHHHHHHHHhh--hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc-CCCCccc
Q 042445           90 WLVTSDPNGILQDSGIVDSIKIFLN--ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKE-IPCITCP  166 (246)
Q Consensus        90 ~i~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~  166 (246)
                      |+++++.       ++++.+.....  .++++|++.+.++..++.. .+.++++.++.++++++.+.+.|++ +|++. +
T Consensus       249 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~  319 (391)
T 4dq6_A          249 YVVLPDE-------KDYKLLDDAFTRIDIKRNNCFSLVATEASYNN-GESWLESFLEYLESNIDFAIKYINENMPKLK-V  319 (391)
T ss_dssp             EEECCSH-------HHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSE-E
T ss_pred             EEEeCCH-------HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHhhCCCCE-e
Confidence            9999863       67777776633  2337889999999998885 3678999999999999999999988 78887 5


Q ss_pred             cCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHHHHHH
Q 042445          167 KKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKAFY  239 (246)
Q Consensus       167 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l~~~~  239 (246)
                      ..|.+++++|++++....    +..++...+++++||.+.||..|+.  ++++|++++.+++++++++++|.+++
T Consensus       320 ~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l  390 (391)
T 4dq6_A          320 RKPEGTYLLWVDFSALGL----SDEELESILVQKGKVALNQGNSFGIGGSGYQRINLACPRSMLEEALIRIKNAI  390 (391)
T ss_dssp             CCCSBSSEEEEECGGGCC----CHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred             cCCCccEEEEEEhhhcCC----CHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEEcCCHHHHHHHHHHHHHHh
Confidence            688999999998875211    3555655555445999999998876  59999999999999999999999876

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=100.00  E-value=2.4e-33  Score=240.01  Aligned_cols=226  Identities=16%  Similarity=0.232  Sum_probs=189.0

Q ss_pred             hhhhhhhc-cc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC--cccEEEE
Q 042445            2 ELINQDIT-RE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS--IVPLLTL   74 (246)
Q Consensus         2 e~~~~~~~-~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~--~~~~i~~   74 (246)
                      |.+++.++ ++    ++++|+||||.+++.+++++|.++|++||+++|+||+|.++.+++..+.++..+.+  .++++++
T Consensus       184 ~~le~~i~~~~~~~vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~  263 (421)
T 3l8a_A          184 EQLEKDIIDNNVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIIL  263 (421)
T ss_dssp             HHHHHHHHHTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEE
T ss_pred             HHHHHHhhccCCeEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEE
Confidence            45666665 33    78999999999999999999999999999999999999999998866666666644  4789999


Q ss_pred             cccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHh-hh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 042445           75 GSISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFL-NI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADK  152 (246)
Q Consensus        75 ~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~-~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~  152 (246)
                      .|+||.|+++|+|+||+++++.       ++.+.+.... .. ++++|++++.++.+++.. .+.++++.++.++++++.
T Consensus       264 ~s~sK~~g~~G~~~G~~~~~~~-------~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~-~~~~~~~~~~~~~~~~~~  335 (421)
T 3l8a_A          264 SSATKTFNIAGTKNSFAIIQNE-------SLRRKFQYRQLANNQHEVPTVGMIATQAAFQY-GKPWLEELKTVIEGNIKL  335 (421)
T ss_dssp             ECSHHHHTCGGGCCEEEECCSH-------HHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHH
T ss_pred             EeChhhccCchhheEeEEcCCH-------HHHHHHHHHHHhcccCCCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999842       8888887664 22 337899999999999985 467899999999999999


Q ss_pred             HHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHH
Q 042445          153 CCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALEN  230 (246)
Q Consensus       153 l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~  230 (246)
                      +.+.|++++++. +..|.+++++|++++....    +..++...+++++||.+.||..|+.  ++++|++++.+++++++
T Consensus       336 l~~~L~~~~~i~-~~~~~~~~~~~v~~~~~~~----~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~i~~  410 (421)
T 3l8a_A          336 VIKELEAKTKIK-VMEPEGTYLVWLDFSAYAI----AQPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVATPKNTVQE  410 (421)
T ss_dssp             HHHHHHHHCSCE-EECCSBSSEEEEECGGGTC----CTTHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCSCHHHHHH
T ss_pred             HHHHHHhCCCce-EeCCCeeEEEEEeccccCC----CHHHHHHHHHHhCCEEEECchhhCCCCCCEEEEEecCCHHHHHH
Confidence            999998877777 5788999999998875311    3456666666678999999998875  79999999999999999


Q ss_pred             HHHHHHHHHH
Q 042445          231 GLGRMKAFYD  240 (246)
Q Consensus       231 ~~~~l~~~~~  240 (246)
                      ++++|.++++
T Consensus       411 ~l~~l~~~l~  420 (421)
T 3l8a_A          411 ALSRIISVFG  420 (421)
T ss_dssp             HHHHHHHHC-
T ss_pred             HHHHHHHHHh
Confidence            9999998875

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=100.00  E-value=5.3e-33  Score=235.37  Aligned_cols=227  Identities=17%  Similarity=0.231  Sum_probs=182.0

Q ss_pred             hhhhhhhcc-c----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcc
Q 042445            2 ELINQDITR-E----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGS   76 (246)
Q Consensus         2 e~~~~~~~~-~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s   76 (246)
                      |.+++.++. +    ++++||||||.++|.+++++|+++|++||+++|+||+|.++.+++..+.++..++....-. +.|
T Consensus       152 ~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~-~~s  230 (390)
T 1d2f_A          152 GKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWAL-LTS  230 (390)
T ss_dssp             HHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEE-EEC
T ss_pred             HHHHHHhccCCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHcchhhHhh-ccC
Confidence            445555543 2    6689999999999999999999999999999999999999998776555655554321012 999


Q ss_pred             cccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh--hcC-CCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 042445           77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN--ISS-DPATFIQGAVPQILEKTEEEFFSKIIDILRETADKC  153 (246)
Q Consensus        77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~--~~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l  153 (246)
                      +||.|+++|+|+||+++++.       ++++.+.....  ..+ ++|++.|.++.+++.. .+.++++.++.++++++.+
T Consensus       231 ~sK~~~~~G~r~G~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l  302 (390)
T 1d2f_A          231 GSKSFNIPALTGAYGIIENS-------SSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQ-GAPWLDALRIYLKDNLTYI  302 (390)
T ss_dssp             SHHHHTCGGGCCEEEEECSH-------HHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHH
T ss_pred             ccHhhcccChhheEEEECCH-------HHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999742       77888876643  332 7799999999888884 3678899999999999999


Q ss_pred             HHHhhc-CCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHH
Q 042445          154 CDRLKE-IPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALEN  230 (246)
Q Consensus       154 ~~~L~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~  230 (246)
                      .+.|++ +|++. +..|.+++++|++++...   . +..++...+++++||.+.||..|+.  ++++|++++.+++++++
T Consensus       303 ~~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~---~-~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~~~~~~l~~  377 (390)
T 1d2f_A          303 ADKMNAAFPELN-WQIPQSTYLAWLDLRPLN---I-DDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGCPRSKLEK  377 (390)
T ss_dssp             HHHHHHHCSSCC-CCCCSBCSEEEEECGGGC---C-CHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCSCHHHHHH
T ss_pred             HHHHHhhCCCCE-EecCCccEEEEEEccccC---C-CHHHHHHHHHHHcCEEeeCccccCCCCCCeEEEEecCCHHHHHH
Confidence            999998 78877 567888999999886431   1 3455555554478999999998863  78999999998899999


Q ss_pred             HHHHHHHHHHHH
Q 042445          231 GLGRMKAFYDRH  242 (246)
Q Consensus       231 ~~~~l~~~~~~~  242 (246)
                      ++++|.++++++
T Consensus       378 ~l~~l~~~l~~~  389 (390)
T 1d2f_A          378 GVAGLINAIRAV  389 (390)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh
Confidence            999999998765

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=100.00  E-value=1.6e-33  Score=240.21  Aligned_cols=228  Identities=21%  Similarity=0.322  Sum_probs=184.3

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEcc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGS   76 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s   76 (246)
                      +.+++.++++    ++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.+++..+.++..++. .++++++.|
T Consensus       151 ~~l~~~l~~~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s  230 (411)
T 2o0r_A          151 DALRRAVTPRTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISS  230 (411)
T ss_dssp             HHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEE
T ss_pred             HHHHHhhccCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEee
Confidence            3455555443    77899999999999999999999999999999999999999987655555555543 567899999


Q ss_pred             cccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445           77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD  155 (246)
Q Consensus        77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  155 (246)
                      +||.|+++|+|+||+++++        ++++.+..... .+++.+++.|.++..+|+.. +.++++.++.++++++.+.+
T Consensus       231 ~sK~~~~~G~r~G~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~  301 (411)
T 2o0r_A          231 AAKMFNCTGWKIGWACGPA--------ELIAGVRAAKQYLSYVGGAPFQPAVALALDTE-DAWVAALRNSLRARRDRLAA  301 (411)
T ss_dssp             HHHHTTCTTTCEEEEECCH--------HHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhcCCccceEEEEeeCH--------HHHHHHHHHHhhccCCCChHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999987        88888876643 34477889999999999854 77889999999999999999


Q ss_pred             HhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcC-------------CCCeEEEEee
Q 042445          156 RLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG-------------LKDWLRITFA  222 (246)
Q Consensus       156 ~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~-------------~~~~iRls~~  222 (246)
                      .|+++ ++. +..|.+|+|+|++++...  + .+..++...+++++||.+.||..|.             .++++|++++
T Consensus       302 ~L~~~-g~~-~~~~~~g~~~~~~~~~~~--~-~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~  376 (411)
T 2o0r_A          302 GLTEI-GFA-VHDSYGTYFLCADPRPLG--Y-DDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFC  376 (411)
T ss_dssp             HHHHH-TCE-ECCCCBSSEEEEECGGGT--C-CCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECC
T ss_pred             HHHHc-CCE-ecCCCeeEEEEEecCCCC--C-CCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEec
Confidence            99887 666 467788999999886420  0 1355666666678899999998873             2478999999


Q ss_pred             cChHHHHHHHHHHHHHHHHHh
Q 042445          223 VEPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       223 ~~~~~l~~~~~~l~~~~~~~~  243 (246)
                      .+++++++++++|.+++++.+
T Consensus       377 ~~~e~i~~~~~~l~~~~~~~~  397 (411)
T 2o0r_A          377 KRDDTLDEAIRRLSVLAERPA  397 (411)
T ss_dssp             SCHHHHHHHHHHHGGGGC---
T ss_pred             CCHHHHHHHHHHHHHHHhccC
Confidence            889999999999998876554

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=100.00  E-value=2.5e-33  Score=236.06  Aligned_cols=207  Identities=20%  Similarity=0.281  Sum_probs=174.5

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccC-----CcccEEEEcccccccccCCc
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFG-----SIVPLLTLGSISKRGIVPGL   86 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-----~~~~~i~~~s~sK~~~~~g~   86 (246)
                      ++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++.........+     ..++++++.|+||.||++|+
T Consensus       159 ~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~  238 (376)
T 3ezs_A          159 ILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGL  238 (376)
T ss_dssp             EECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGGG
T ss_pred             EEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhccCCccc
Confidence            7789999999999999999999999999999999999999998874333322221     45689999999999999999


Q ss_pred             eEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCcc
Q 042445           87 RLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITC  165 (246)
Q Consensus        87 r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~  165 (246)
                      |+||+++++        ++++.+..... .++++|++.|.++..++..  ..++++.++.++++++.+.+.|+   ++  
T Consensus       239 r~G~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~---~~--  303 (376)
T 3ezs_A          239 RSGFIAGDS--------RLLEKYKAFRAYLGYTSANAIQKASEAAWLD--DRHAEFFRNIYANNLKLARKIFK---NT--  303 (376)
T ss_dssp             CCEEEEECH--------HHHHHHHHHHTTTCCCCCHHHHHHHHHHHHC--SHHHHHHHHHHHHHHHHHHHHST---TC--
T ss_pred             eeEEEeeCH--------HHHHHHHHHHhhhcCCCChHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHhc---CC--
Confidence            999999988        89999887744 3457899999999999984  45688999999999999999987   33  


Q ss_pred             ccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcC----CCCeEEEEeecChHHHHHHHHHHHHHHHH
Q 042445          166 PKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG----LKDWLRITFAVEPSALENGLGRMKAFYDR  241 (246)
Q Consensus       166 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~----~~~~iRls~~~~~~~l~~~~~~l~~~~~~  241 (246)
                       ..|.+|+|+|++++        +..++...+++++||.+.||..|+    .++++|++++.+++++++++++|.+++++
T Consensus       304 -~~~~~~~~~~~~~~--------~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l~~  374 (376)
T 3ezs_A          304 -LIYPYSFYVYLPVQ--------NGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVYDTPLLEKPLEIIETYREN  374 (376)
T ss_dssp             -CCCSBSSEEEEECS--------CHHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECCSCHHHHHHHHHHHHHHHCC
T ss_pred             -CCCCcceEEEEECC--------CHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEcCCHHHHHHHHHHHHHHHHh
Confidence             36789999999886        256666666655999999999987    27899999988999999999999998865


Q ss_pred             H
Q 042445          242 H  242 (246)
Q Consensus       242 ~  242 (246)
                      +
T Consensus       375 ~  375 (376)
T 3ezs_A          375 H  375 (376)
T ss_dssp             -
T ss_pred             c
Confidence            3

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=100.00  E-value=9.3e-33  Score=235.02  Aligned_cols=217  Identities=20%  Similarity=0.310  Sum_probs=180.5

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      ++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++..+.++..++..+++++++|+||.++ +|+|+||+
T Consensus       180 ~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~  258 (407)
T 2zc0_A          180 TIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSKVLG-TGFRIGWI  258 (407)
T ss_dssp             ECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEESTTTTC-TTSCCEEE
T ss_pred             ECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEcccccccC-CCcceEEE
Confidence            36789999999999999999999999999999999999999887655556666665568999999999998 99999999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhch-H-HHHHHHHHHHHHHHHHHHHHhhc-CCCCcccc
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTE-E-EFFSKIIDILRETADKCCDRLKE-IPCITCPK  167 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~-~-~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~  167 (246)
                      ++++        ++++.+..... .+.+.+++.|.++..+++... + .++++.++.++++++.+.+.|++ .+++. +.
T Consensus       259 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~  329 (407)
T 2zc0_A          259 IAEG--------EILKKVLMQKQPIDFCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLPNAE-FT  329 (407)
T ss_dssp             ECCH--------HHHHHHHHHHTTTTSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCTTSC-BC
T ss_pred             ecCH--------HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCE-Ee
Confidence            9987        89998887644 334679999999999998642 4 67888899999999999999987 67766 45


Q ss_pred             CCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC----CCeEEEEeec-ChHHHHHHHHHHHHHHHHH
Q 042445          168 KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL----KDWLRITFAV-EPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       168 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----~~~iRls~~~-~~~~l~~~~~~l~~~~~~~  242 (246)
                      .|.+|+|+|++++...     +..++...+++++||.+.||..|..    ++++|++++. +++++++++++|.+++++.
T Consensus       330 ~~~~~~~~~~~~~~~~-----~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~~  404 (407)
T 2zc0_A          330 KPIAGMFVMFFLPEGA-----DGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRPSKEEIPIGIKKLAKLYKEK  404 (407)
T ss_dssp             CCSBSSEEEEECSTTC-----CHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSSCTTHHHHHHHHHHHHHHHH
T ss_pred             cCCCcEEEEEEcCCCC-----CHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence            6888999999886421     3555655555445999999988853    6899999997 7899999999999999876


Q ss_pred             h
Q 042445          243 A  243 (246)
Q Consensus       243 ~  243 (246)
                      .
T Consensus       405 ~  405 (407)
T 2zc0_A          405 F  405 (407)
T ss_dssp             C
T ss_pred             h
Confidence            4

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=100.00  E-value=5.3e-33  Score=235.48  Aligned_cols=217  Identities=23%  Similarity=0.396  Sum_probs=179.5

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEcc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGS   76 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s   76 (246)
                      |.+++.++++    ++++||||||.++|.+++++|+++|+++|+++|+||+|.++.+++ .+.++..++. .++++++.|
T Consensus       165 ~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g-~~~~~~~~~~~~~~~i~~~s  243 (389)
T 1o4s_A          165 EEVEGLLVGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTD-EFTSILDVSEGFDRIVYING  243 (389)
T ss_dssp             HHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSS-CCCCHHHHCSSSTTEEEEEE
T ss_pred             HHHHHhcccCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCC-CCCCHhhcCCCCCcEEEEee
Confidence            3455555433    778999999999999999999999999999999999999998875 3334444433 467899999


Q ss_pred             cccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445           77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD  155 (246)
Q Consensus        77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  155 (246)
                      +||.|+++|+|+||+++++        ++++.+..... .+++++++.|.++..+|...    +++.++.++++++.+.+
T Consensus       244 ~sK~~~~~G~r~G~l~~~~--------~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~----~~~~~~~~~~~~~~l~~  311 (389)
T 1o4s_A          244 FSKSHSMTGWRVGYLISSE--------KVATAVSKIQSHTTSCINTVAQYAALKALEVD----NSYMVQTFKERKNFVVE  311 (389)
T ss_dssp             STTTTTCGGGCCEEEECCH--------HHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCC----CHHHHHHHHHHHHHHHH
T ss_pred             chhhcCCcccceEEEEeCH--------HHHHHHHHHhhhcccCCCHHHHHHHHHHHhcc----HHHHHHHHHHHHHHHHH
Confidence            9999999999999999988        88888877643 34478999999999999864    77888889999999999


Q ss_pred             HhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHH
Q 042445          156 RLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRM  235 (246)
Q Consensus       156 ~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l  235 (246)
                      .|+++ ++. +..|.+++++|++++ .      +..++...+++++||.+.||..|+.++++|++++.+++++++++++|
T Consensus       312 ~L~~~-g~~-~~~~~~~~~~~~~~~-~------~~~~l~~~l~~~~gi~v~~g~~f~~~~~~Ris~~~~~~~l~~~l~~l  382 (389)
T 1o4s_A          312 RLKKM-GVK-FVEPEGAFYLFFKVR-G------DDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFATSIERLTEALDRI  382 (389)
T ss_dssp             HHHHT-TCC-CCCCSBSSEEEEECS-S------CHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCSCHHHHHHHHHHH
T ss_pred             HHHhc-CCe-eecCCcceEEEEeCC-C------CHHHHHHHHHHHCCEEEeCchhcCCCCeEEEEEeCCHHHHHHHHHHH
Confidence            99987 676 456888999998886 1      35566555555899999999988877899999999899999999999


Q ss_pred             HHHHH
Q 042445          236 KAFYD  240 (246)
Q Consensus       236 ~~~~~  240 (246)
                      .++++
T Consensus       383 ~~~l~  387 (389)
T 1o4s_A          383 EDFLN  387 (389)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            98874

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=100.00  E-value=5e-33  Score=238.37  Aligned_cols=225  Identities=13%  Similarity=0.107  Sum_probs=181.1

Q ss_pred             hhhhhhhc-cc----ccc-CCcCCCccCCChhhHHHHHHHH-HHcCCEEEEccccCCcccCCCCCc--ccccc----CCc
Q 042445            2 ELINQDIT-RE----FSD-FQVFHVGSGFSGSFVSPIAETA-KKLGIMVIANEVYGHLAFGNTPFV--SMGVF----GSI   68 (246)
Q Consensus         2 e~~~~~~~-~~----~~~-~p~NPtG~~~~~~~~~~l~~~~-~~~~~~ii~De~y~~~~~~~~~~~--~~~~~----~~~   68 (246)
                      |.+++.++ ++    +++ +||||||.++|.+++++|+++| ++||+++|+||+|.++.+++.+..  ++..+    +..
T Consensus       170 ~~l~~~l~~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~  249 (427)
T 3ppl_A          170 DAVEELVKNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNP  249 (427)
T ss_dssp             HHHHHHTTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCT
T ss_pred             HHHHHHHhcCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCC
Confidence            45566553 22    333 7799999999999999999999 999999999999999888764422  33332    355


Q ss_pred             ccEEEEcccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhh-ch-HHHHHHHHHH
Q 042445           69 VPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEK-TE-EEFFSKIIDI  145 (246)
Q Consensus        69 ~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~-~~-~~~~~~~~~~  145 (246)
                      +++++++||||. +++|+|+||+++++        ++++.+..... .+.+++++.|.++..++.. .. +.++++.++.
T Consensus       250 ~~~i~~~S~SK~-~~~G~r~G~~~~~~--------~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~  320 (427)
T 3ppl_A          250 NRFWAFTSTSKI-TLAGAGVSFFLTSA--------ENRKWYTGHAGIRGIGPNKVNQLAHARYFGDAEGVRAVMRKHAAS  320 (427)
T ss_dssp             TSEEEEEESTTT-SCTTSSCEEEECCH--------HHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHH
T ss_pred             CcEEEEechhhc-cCcCccEEEEEcCH--------HHHHHHHHHhhcccCCCCHHHHHHHHHHHhChhhHHHHHHHHHHH
Confidence            789999999999 89999999999998        99998887743 4558899999999999996 22 5788999999


Q ss_pred             HHHHHHHHHHHhhc-CC---CCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEec-CCCcC-----CCC
Q 042445          146 LRETADKCCDRLKE-IP---CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLP-GITVG-----LKD  215 (246)
Q Consensus       146 ~~~~~~~l~~~L~~-~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p-g~~f~-----~~~  215 (246)
                      ++++++.+.+.|++ ++   ++. +..|++|+|+|++++..       +.+.+.+.+.++||.+.| |..|+     .++
T Consensus       321 ~~~~~~~l~~~L~~~l~~~~~~~-~~~p~~g~~~~~~~~~~-------~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~  392 (427)
T 3ppl_A          321 LAPKFNKVLEILDSRLAEYGVAQ-WTVPAGGYFISLDVVPG-------TASRVAELAKEAGIALTGAGSSYPLRQDPENK  392 (427)
T ss_dssp             HHHHHHHHHHHHHHHHGGGTCCE-ECCCSBSSCEEEECSTT-------CHHHHHHHHHHTTEECCCTTTTSGGGCCTTSC
T ss_pred             HHHHHHHHHHHHHHhcCCCCceE-EeCCCccEEEEEECCcc-------hHHHHHHHHHHCCCEEecCcCcCCCCCCCCCC
Confidence            99999999998865 33   354 56889999999988753       234446678899999999 55554     268


Q ss_pred             eEEEEeec-ChHHHHHHHHHHHHHHHHHh
Q 042445          216 WLRITFAV-EPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       216 ~iRls~~~-~~~~l~~~~~~l~~~~~~~~  243 (246)
                      ++|+|++. +++++++++++|.+++++..
T Consensus       393 ~~Ris~~~~~~~~i~~~~~~l~~~l~~~~  421 (427)
T 3ppl_A          393 NLRLAPSLPPVEELEVAMDGVATCVLLAA  421 (427)
T ss_dssp             EEEECCSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999997 88999999999999988754

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=100.00  E-value=8.7e-33  Score=237.01  Aligned_cols=221  Identities=14%  Similarity=0.179  Sum_probs=179.3

Q ss_pred             hhhhhhhcc---c----cccCCcCCCccCCChhhHHHHHHHHHH-----cCCEEEEccccCCcccCCCCCcccc-ccCC-
Q 042445            2 ELINQDITR---E----FSDFQVFHVGSGFSGSFVSPIAETAKK-----LGIMVIANEVYGHLAFGNTPFVSMG-VFGS-   67 (246)
Q Consensus         2 e~~~~~~~~---~----~~~~p~NPtG~~~~~~~~~~l~~~~~~-----~~~~ii~De~y~~~~~~~~~~~~~~-~~~~-   67 (246)
                      |.+++.+++   +    ++++||||||.+++.+++++|+++|++     +|+++|+||+|.++.+++.++.++. .+.. 
T Consensus       177 ~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~  256 (430)
T 2x5f_A          177 DSLVEALQSYNKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNL  256 (430)
T ss_dssp             HHHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTT
T ss_pred             HHHHHHHHhcCCCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhc
Confidence            455555543   2    789999999999999999999999999     9999999999999998765444543 4432 


Q ss_pred             ccc---EEEEcccccccccCCceEEEEEe---eCCCCCcchhhHHHHHHHHhh-----hcCCCCchHHHHHHHHHh-hch
Q 042445           68 IVP---LLTLGSISKRGIVPGLRLGWLVT---SDPNGILQDSGIVDSIKIFLN-----ISSDPATFIQGAVPQILE-KTE  135 (246)
Q Consensus        68 ~~~---~i~~~s~sK~~~~~g~r~G~i~~---~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~q~~~~~~l~-~~~  135 (246)
                      .++   +++++|+||.|+++|+|+||+++   ++        ++++.+.....     .++++|++.|.++..+|+ ...
T Consensus       257 ~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~  328 (430)
T 2x5f_A          257 HSNAILPIRLDGATKEFFAWGFRVGFMTFGTSDQ--------TTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQ  328 (430)
T ss_dssp             CCTTEEEEEEEEHHHHTTCGGGCCEEEEEBCCCH--------HHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHH
T ss_pred             cCCcceEEEEEecccCCCCCCCCeEEEEEecCCH--------HHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccChH
Confidence            457   89999999999999999999999   77        88888876543     345789999999999998 652


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHhh----cCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCC
Q 042445          136 -EEFFSKIIDILRETADKCCDRLK----EIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGIT  210 (246)
Q Consensus       136 -~~~~~~~~~~~~~~~~~l~~~L~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~  210 (246)
                       .+.+++.++.++++++.+.+.|+    +. ++. +..|.+|+|+|++++ ..     +..++...+++++||.+.||  
T Consensus       329 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-g~~-~~~~~~g~~~~~~~~-~~-----~~~~~~~~l~~~~gi~v~~g--  398 (430)
T 2x5f_A          329 FDKEIEQNIQTLKERYEVTKEVVYADQYHS-HWQ-AYDFNSGYFMAIKVH-DV-----DPEALRKHLIDKYSIGVIAL--  398 (430)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCGGGTT-TEE-ECCCCBSSEEEEEES-SS-----CHHHHHHHHHHHHCEECEEC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-Cce-eeCCCceEEEEeCCC-CC-----CHHHHHHHHHHhCCEEEecC--
Confidence             34455599999999999999998    44 565 567889999999987 21     35566555554599999998  


Q ss_pred             cCCCCeEEEEee-cChHHHHHHHHHHHHHHHHH
Q 042445          211 VGLKDWLRITFA-VEPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       211 f~~~~~iRls~~-~~~~~l~~~~~~l~~~~~~~  242 (246)
                        .++++|++++ .+++++++++++|.+++++.
T Consensus       399 --~~~~iRis~~~~~~e~i~~~~~~l~~~l~~~  429 (430)
T 2x5f_A          399 --NATDIRIAFSCVEKDDIPHVFDSIAKAIDDL  429 (430)
T ss_dssp             --SSSEEEEEGGGSCGGGHHHHHHHHHHHHHHH
T ss_pred             --CCCeEEEEEecCCHHHHHHHHHHHHHHHHhc
Confidence              3689999999 68999999999999998764

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0

Probab=100.00  E-value=9.8e-34  Score=240.91  Aligned_cols=203  Identities=14%  Similarity=0.128  Sum_probs=158.5

Q ss_pred             cccCC-cCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCC--CCcccccc-CCcccEEEEcccccccccCCce
Q 042445           12 FSDFQ-VFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNT--PFVSMGVF-GSIVPLLTLGSISKRGIVPGLR   87 (246)
Q Consensus        12 ~~~~p-~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~--~~~~~~~~-~~~~~~i~~~s~sK~~~~~g~r   87 (246)
                      ++|+| |||||.++|.+++++|+++|++||+++|+||+|.++.+++.  ...++..+ ...+++|+++||||.|+++|+|
T Consensus       178 ~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlR  257 (405)
T 3k7y_A          178 ILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNMSLYGER  257 (405)
T ss_dssp             EECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTSCCTTTT
T ss_pred             EEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCCcEEEEeeCCccCCCcccc
Confidence            56554 89999999999999999999999999999999999998642  12233333 2346899999999999999999


Q ss_pred             EEEEEe--eCCCCCcchhhHHHHHHH----H-hhhcCCCCchHHHHHHHHHhhch-----HHHHHHHHHHHHHHHHHHHH
Q 042445           88 LGWLVT--SDPNGILQDSGIVDSIKI----F-LNISSDPATFIQGAVPQILEKTE-----EEFFSKIIDILRETADKCCD  155 (246)
Q Consensus        88 ~G~i~~--~~~~~~~~~~~~~~~l~~----~-~~~~~~~~~~~q~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~l~~  155 (246)
                      +||+++  ++.       ++++.+..    . ...+++++.++|.++..+++++.     .+++++.++.++++|+.+.+
T Consensus       258 iG~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~~  330 (405)
T 3k7y_A          258 AGALHIVCKNQ-------EEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNRILFFN  330 (405)
T ss_dssp             EEEEEEECSSH-------HHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCH-------HHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999875  231       55555432    2 22344667899999999998642     34567778889999999999


Q ss_pred             Hhh----cCC--C-CccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec-ChHH
Q 042445          156 RLK----EIP--C-ITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV-EPSA  227 (246)
Q Consensus       156 ~L~----~~~--~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~-~~~~  227 (246)
                      .|+    +++  + +. +..|+||||+|+.++.          +++..+ +++||.+.||.        |||++. ++++
T Consensus       331 ~L~~~~~~~g~~~~~~-~~~p~gg~f~~~~l~~----------~~~~~L-~~~gV~v~p~~--------Ris~a~~~~~~  390 (405)
T 3k7y_A          331 KLETYQKKYNLNYDWN-VYKKQRGLFSFVPLLA----------KIAEHL-KTHHIYIINNG--------RINVSGITKNN  390 (405)
T ss_dssp             HHHHHGGGGTCCCCGG-GGSSCCSSEEECGGGG----------GGTTTT-TTTTEECCTTS--------EEEGGGCCTTH
T ss_pred             HHHhhhhhcCCCCCCc-cccCCceEEEecCCCH----------HHHHHH-HHCCEeecCCC--------eEEEeccCHHH
Confidence            999    763  1 44 5789999999976542          344555 89999999965        999985 8999


Q ss_pred             HHHHHHHHHHHHHH
Q 042445          228 LENGLGRMKAFYDR  241 (246)
Q Consensus       228 l~~~~~~l~~~~~~  241 (246)
                      +++++++|.+++++
T Consensus       391 i~~~~~~i~~~~~~  404 (405)
T 3k7y_A          391 VDYIADKICLSLSQ  404 (405)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999998864

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=100.00  E-value=7.1e-33  Score=235.08  Aligned_cols=223  Identities=19%  Similarity=0.292  Sum_probs=173.3

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHH------cCCEEEEccccCCcccCCCCCccccccCCcccE
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKK------LGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPL   71 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~------~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~   71 (246)
                      |.+++.++++    ++++||||||.+++.+++++|+++|++      ||+++|+||+|.++.+++.......  ...+++
T Consensus       163 ~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~--~~~~~~  240 (398)
T 3ele_A          163 DALEERINAHTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVT--KYYDNT  240 (398)
T ss_dssp             HHHHHTCCTTEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGG--GTCSSE
T ss_pred             HHHHHHhCcCCCEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChH--hhcCCe
Confidence            3455555443    788999999999999999999999999      9999999999999998764433322  234588


Q ss_pred             EEEcccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh--hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 042445           72 LTLGSISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN--ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRET  149 (246)
Q Consensus        72 i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~  149 (246)
                      ++++|+||.|+++|+|+||+++++.  ......+.+.+.....  .+.+++++.|.++..++....      .++.++++
T Consensus       241 i~~~s~sK~~~~~G~r~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~  312 (398)
T 3ele_A          241 LVCYSYSKSLSLPGERIGYVLVPDE--VYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQGATG------DINAYKEN  312 (398)
T ss_dssp             EEEEESTTTSSCTTTCCEEEECCTT--STTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTTCCC------CHHHHHHH
T ss_pred             EEEEehhhcCCCccceeEEEEEcch--hhhHHHHHHHHHHHhhhccccCCCHHHHHHHHHHhcCHH------HHHHHHHH
Confidence            9999999999999999999999882  1100013344433322  134677799999888887532      35677888


Q ss_pred             HHHHHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHH
Q 042445          150 ADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALE  229 (246)
Q Consensus       150 ~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~  229 (246)
                      ++.+.+.|+++ ++. +..|.+++|+|++++..      +..++ .+.|.++||.+.||..|+.++++|++++.++++++
T Consensus       313 ~~~l~~~L~~~-g~~-~~~~~~~~~~~~~~~~~------~~~~~-~~~l~~~gi~v~~g~~~~~~~~iRis~~~~~e~i~  383 (398)
T 3ele_A          313 RDLLYEGLTRI-GYH-CFKPDGAFYMFVKALED------DSNAF-CEKAKEEDVLIVAADGFGCPGWVRISYCVDREMIK  383 (398)
T ss_dssp             HHHHHHHHHHH-TCC-EECCSBSSEEEEECSSS------CHHHH-HHHHHTTTEECEESGGGTCTTEEEEECCSCHHHHH
T ss_pred             HHHHHHHHHHc-CCe-ecCCCeeEEEEEEcCCC------CHHHH-HHHHHHCCEEEeCccccCCCCeEEEEecCCHHHHH
Confidence            89999999887 666 56889999999988642      24444 55678999999999999888999999998999999


Q ss_pred             HHHHHHHHHHHHHh
Q 042445          230 NGLGRMKAFYDRHA  243 (246)
Q Consensus       230 ~~~~~l~~~~~~~~  243 (246)
                      +++++|.+++++++
T Consensus       384 ~~l~~l~~~l~~~~  397 (398)
T 3ele_A          384 HSMPAFEKIYKKYN  397 (398)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999998764

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=100.00  E-value=4e-33  Score=237.04  Aligned_cols=214  Identities=17%  Similarity=0.114  Sum_probs=169.4

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      ++++||||||.++|.+++++|+++|+++|+++|+||+|.++.+++....++..++. .++++++.|+||.|+++|+|+||
T Consensus       168 ~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~GlriG~  247 (400)
T 3asa_A          168 CLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFAGIRLGW  247 (400)
T ss_dssp             EEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTTTTCCCEE
T ss_pred             EEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcCCcchheeE
Confidence            77899999999999999999999999999999999999998876543344555543 45789999999999999999999


Q ss_pred             EEeeCCCCCcchhhH-------HHHHHHH-hh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 042445           91 LVTSDPNGILQDSGI-------VDSIKIF-LN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIP  161 (246)
Q Consensus        91 i~~~~~~~~~~~~~~-------~~~l~~~-~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  161 (246)
                      +++++        ++       ++.+... .. .+.++|++.|.++..+|+..   ++++.++.++++++.+.+.|+++ 
T Consensus       248 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~l~~~L~~~-  315 (400)
T 3asa_A          248 TVIPQ--------ELTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSIL---PQLEAIHYYRENSDLLRKALLAT-  315 (400)
T ss_dssp             EECCT--------TCBCTTSCBHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHT---TTCHHHHHHHHHHHHHHHHHHHT-
T ss_pred             EeeCh--------hhccchhhhHHHHHHHHhccCccCCChHHHHHHHHHhCcH---HHHHHHHHHHHHHHHHHHHHHHC-
Confidence            99987        55       4544332 22 22368999999999999854   67888899999999999999987 


Q ss_pred             CCccccCCCCceEEEEE-eccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHHHHH
Q 042445          162 CITCPKKPEGSMFVMVK-LNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKAF  238 (246)
Q Consensus       162 ~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l~~~  238 (246)
                      ++. +..|.+|+|+|++ ++...     ++.+++..+++++||.+.||..|+.  ++++|+++..+++++++++++|.++
T Consensus       316 g~~-~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis~~~~~e~i~~~l~~l~~~  389 (400)
T 3asa_A          316 GFE-VFGGEHAPYLWVKPTQANI-----SDRDLFDFFLREYHIAITPGIGFGRSGSGFVRFSSLGKREDILAACERLQMA  389 (400)
T ss_dssp             TCE-EEECSSSSEEEEECCCTTC-----CTTTHHHHHHHHHSEECEEGGGGCGGGTTCEEEECCSCHHHHHHHHHHHHC-
T ss_pred             CCe-eeCCCCceEEEEeccCCCC-----CHHHHHHHHHHhCCEEEeChhHhCCCCCCEEEEEeeCCHHHHHHHHHHHHHH
Confidence            666 4567789999998 65321     2445666677778999999998864  6899999767899999999999999


Q ss_pred             HHHHh
Q 042445          239 YDRHA  243 (246)
Q Consensus       239 ~~~~~  243 (246)
                      ++++.
T Consensus       390 ~~~~~  394 (400)
T 3asa_A          390 PALQS  394 (400)
T ss_dssp             -----
T ss_pred             HHhhh
Confidence            87654

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=100.00  E-value=2.9e-32  Score=232.55  Aligned_cols=216  Identities=16%  Similarity=0.213  Sum_probs=172.7

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      ++++||||||.+++.+++++|+++|++||+++|+||+|..+..+. .+.... ....++++++.|||| ++++|+|+||+
T Consensus       185 ~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~-~~~~~~-~~~~~~~i~~~s~sK-~~~~G~r~G~~  261 (417)
T 3g7q_A          185 CVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGI-IFSEAR-PLWNPNIILCMSLSK-LGLPGSRCGII  261 (417)
T ss_dssp             EEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCC-BCSCCC-CCCCTTEEEEEESGG-GTCTTSCCEEE
T ss_pred             EECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccccccc-cccccc-cCCCCCEEEEEechh-ccCCCcceEEE
Confidence            788999999999999999999999999999999999998643111 111111 123468999999999 59999999999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhch-HHHHHH-HHHHHHHHHHHHHHHhhc-CCC--Ccc
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTE-EEFFSK-IIDILRETADKCCDRLKE-IPC--ITC  165 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~-~~~~~~-~~~~~~~~~~~l~~~L~~-~~~--~~~  165 (246)
                      ++++        ++++.+..... .+++++++.|.++..+++... ..+..+ .++.++++++.+.+.|++ +++  +. 
T Consensus       262 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-  332 (417)
T 3g7q_A          262 IAND--------KTITAIANMNGIISLAPGGMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSEERCL-  332 (417)
T ss_dssp             ECCH--------HHHHHHHHHHHHHCCCCCSHHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHHHHHHHCCTTTCE-
T ss_pred             EeCH--------HHHHHHHHhhcceeeCCCcHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCce-
Confidence            9988        99998887644 455789999999999998654 344444 778899999999999987 664  44 


Q ss_pred             ccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC---------CCeEEEEeecChHHHHHHHHHHH
Q 042445          166 PKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---------KDWLRITFAVEPSALENGLGRMK  236 (246)
Q Consensus       166 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---------~~~iRls~~~~~~~l~~~~~~l~  236 (246)
                      +..|++|+|+|++++....    +..++ ...|.++||.+.||..|+.         ++++|||++.+++++++++++|.
T Consensus       333 ~~~~~~g~~~~~~~~~~~~----~~~~l-~~~l~~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~~~~~~i~~~~~~l~  407 (417)
T 3g7q_A          333 IHKPEGAIFLWLWFKDLPI----TTELL-YQRLKARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVPEPDKIEAGVKILA  407 (417)
T ss_dssp             EECCCBSSEEEEECTTCSS----CHHHH-HHHHHHTTEECEEGGGGCTTBSSCCGGGGGEEEEESCSCHHHHHHHHHHHH
T ss_pred             eeCCCcceEEEEEcCCCCC----CHHHH-HHHHHHCCEEEECchhhCCCCccccccCCCeEEEEecCCHHHHHHHHHHHH
Confidence            4678999999998875211    34444 5556889999999998864         46999999999999999999999


Q ss_pred             HHHHHHhh
Q 042445          237 AFYDRHAE  244 (246)
Q Consensus       237 ~~~~~~~~  244 (246)
                      +++++..+
T Consensus       408 ~~l~~~~~  415 (417)
T 3g7q_A          408 EEIERAWR  415 (417)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99987654

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=100.00  E-value=1.1e-32  Score=234.84  Aligned_cols=231  Identities=23%  Similarity=0.344  Sum_probs=181.6

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCccc-EEEEcc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVP-LLTLGS   76 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~-~i~~~s   76 (246)
                      +.+++.++++    ++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.+++ ...++..++ .++ +++++|
T Consensus       165 ~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~-~~~~~~~~~-~~~~~i~~~s  242 (406)
T 1xi9_A          165 DDIRKKITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEG-EHISPGSLT-KDVPVIVMNG  242 (406)
T ss_dssp             HHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSS-CCCCHHHHC-SSSCEEEEEE
T ss_pred             HHHHHhhCcCceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCC-CCCCHHHcC-CCceEEEEec
Confidence            3455555433    778999999999999999999999999999999999999998843 333454554 557 899999


Q ss_pred             cccccccCCceEEEEE--eeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 042445           77 ISKRGIVPGLRLGWLV--TSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCC  154 (246)
Q Consensus        77 ~sK~~~~~g~r~G~i~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~  154 (246)
                      +||.++++|+|+||++  +++.  ...  ++++.+.......+++|++.|.++.++|+.. ..++++.++.++++++.+.
T Consensus       243 ~sK~~~~~G~r~G~~~~~~~~~--~~~--~l~~~l~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~  317 (406)
T 1xi9_A          243 LSKVYFATGWRLGYMYFVDPEN--KLS--EVREAIDRLARIRLCPNTPAQFAAIAGLTGP-MDYLKEYMKKLKERRDYIY  317 (406)
T ss_dssp             STTTTCCGGGCCEEEEEECTTC--TTH--HHHHHHHHHHHHTCCSCSHHHHHHHHHHHSC-CHHHHHHHHHHHHHHHHHH
T ss_pred             cccccCCCccEEEEEEEecCch--hHH--HHHHHHHHHHHhhcCCCHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999  5541  000  4566666554332578999999999999643 4458888999999999999


Q ss_pred             HHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHH
Q 042445          155 DRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGL  232 (246)
Q Consensus       155 ~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~  232 (246)
                      +.|++++++. +..|.+|+++|++++...  + .+..++...+++++||.+.||..|+.  ++++|++++.+++++++++
T Consensus       318 ~~L~~~~~~~-~~~~~~~~~~~~~~~~~~--~-~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~~~~~~i~~~~  393 (406)
T 1xi9_A          318 KRLNEIPGIS-TTKPQGAFYIFPKIEVGP--W-KNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLPPIEILEEAM  393 (406)
T ss_dssp             HHHHTSTTEE-CCCCCBSSEECCEECSCS--C-SSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHH
T ss_pred             HHHHhCCCCe-eecCCeeEEEEEecCccC--C-CCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEEecCCHHHHHHHH
Confidence            9999987877 467888999998886410  0 13555655555689999999998875  7899999998899999999


Q ss_pred             HHHHHHHHHHh
Q 042445          233 GRMKAFYDRHA  243 (246)
Q Consensus       233 ~~l~~~~~~~~  243 (246)
                      ++|.++++++.
T Consensus       394 ~~l~~~l~~~~  404 (406)
T 1xi9_A          394 DRFEKFMKERL  404 (406)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHHHHHh
Confidence            99999998754

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=100.00  E-value=1.1e-32  Score=232.82  Aligned_cols=221  Identities=24%  Similarity=0.363  Sum_probs=178.4

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      |.+++.++++    ++++||||||.++|.+++++|+++|++||+++|+||+|.++.+ +....++..+ ..++++++.|+
T Consensus       143 ~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~-g~~~~~~~~~-~~~~~~~~~s~  220 (381)
T 1v2d_A          143 SALEKALTPRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYY-GERPRRLREF-APERTFTVGSA  220 (381)
T ss_dssp             HHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBS-SSCCCCHHHH-CTTTEEEEEEH
T ss_pred             HHHHHhcCcCCEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCcccccc-CCCCCCHHHh-cCCCEEEEeec
Confidence            3455555433    7789999999999999999999999999999999999999887 4333344333 44688999999


Q ss_pred             ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHH
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADKCCD  155 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~  155 (246)
                      ||.|+++|+|+||+++++        ++++.+..... .+++++++.|.++..+|.... +.++++.++.++++++.+.+
T Consensus       221 sK~~~~~G~r~G~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~  292 (381)
T 1v2d_A          221 GKRLEATGYRVGWIVGPK--------EFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAG  292 (381)
T ss_dssp             HHHTTCGGGCCEEEECCT--------TTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcCCcccceEEEEeCH--------HHHHHHHHHHhhcccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999987        78887776533 344789999999999998532 46788899999999999999


Q ss_pred             HhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC----CCeEEEEeecChHHHHHH
Q 042445          156 RLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL----KDWLRITFAVEPSALENG  231 (246)
Q Consensus       156 ~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----~~~iRls~~~~~~~l~~~  231 (246)
                      .|++. ++. +..|.+|+|+|++++..       +   +..++.++||.+.||..|+.    ++++|++++.++++++++
T Consensus       293 ~L~~~-g~~-~~~~~~~~~~~~~~~~~-------~---~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~~~~~i~~~  360 (381)
T 1v2d_A          293 GLRAM-GLR-VYVPEGTYFLMAELPGW-------D---AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCKTEEELHLA  360 (381)
T ss_dssp             HHHHT-TCC-EECCSBSSEEEEECTTC-------C---HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCSCHHHHHHH
T ss_pred             HHHHC-CCE-ecCCCcceEEEEecChH-------h---HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCCCHHHHHHH
Confidence            99886 676 45778899999887632       2   66778899999999988864    689999999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 042445          232 LGRMKAFYDRHAE  244 (246)
Q Consensus       232 ~~~l~~~~~~~~~  244 (246)
                      +++|.+++++.++
T Consensus       361 ~~~l~~~l~~~r~  373 (381)
T 1v2d_A          361 LERLGRVVNSPRE  373 (381)
T ss_dssp             HHHHHHHC-----
T ss_pred             HHHHHHHHhhccc
Confidence            9999999877654

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*

Probab=100.00  E-value=1.7e-32  Score=241.39  Aligned_cols=217  Identities=16%  Similarity=0.168  Sum_probs=168.6

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHH--HHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETA--KKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLG   89 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~--~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G   89 (246)
                      +++|||||||.+++.+++++|+++|  +++|++||+||+|.++.++   +.++.... .+++++++||||.||++|+|+|
T Consensus       250 ~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~---~~s~~~~~-~~~~i~~~S~SK~~g~~GlRiG  325 (546)
T 2zy4_A          250 FCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADD---FQSLFAIC-PENTLLVYSFSKYFGATGWRLG  325 (546)
T ss_dssp             EEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTT---CCCHHHHC-GGGEEEEEESTTTTTCGGGCEE
T ss_pred             EEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhccc---CcCHHHhC-CCCEEEEEeCccccCCCCcceE
Confidence            7889999999999999999999999  7899999999999998753   22333332 3589999999999999999999


Q ss_pred             EEEeeCCCCCcchhhHHHHHHHH-------------h------------------------hhcCCCCchHHHHH-----
Q 042445           90 WLVTSDPNGILQDSGIVDSIKIF-------------L------------------------NISSDPATFIQGAV-----  127 (246)
Q Consensus        90 ~i~~~~~~~~~~~~~~~~~l~~~-------------~------------------------~~~~~~~~~~q~~~-----  127 (246)
                      |+++++.       ++++.+...             .                        ..+.+++.+.|.++     
T Consensus       326 ~~~~~~~-------~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~  398 (546)
T 2zy4_A          326 VVAAHQQ-------NVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSL  398 (546)
T ss_dssp             EEEEESS-------CHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHH
T ss_pred             EEEECCH-------HHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHH
Confidence            9999882       366666321             0                        11236788888774     


Q ss_pred             HHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEeccc----c-------ccCCCChHHHHHH
Q 042445          128 PQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYS----L-------LEGINSDMEFALK  196 (246)
Q Consensus       128 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~----~-------~~~~~~~~~~~~~  196 (246)
                      ..++.+ .+.+.++.++.++++++.+.+.|. + ++. ...|++|+|+|++++.-    .       ++...++.+++.+
T Consensus       399 ~all~~-~~~~~~~~r~~~~~r~~~l~~~L~-~-~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~~l~~  474 (546)
T 2zy4_A          399 FALMDE-ADEYKHTLKQLIRRRETTLYRELG-M-PPL-RDENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFR  474 (546)
T ss_dssp             HHHHCT-TCHHHHHHHHHHHHHHHHHHGGGT-S-SCC-CCTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHH
T ss_pred             HHHHhc-cHHHHHHHHHHHHHHHHHHHHhcC-C-Ccc-cCCCCeeEEEEEEHHHhhcccccHHHHHHhhccCCHHHHHHH
Confidence            244543 367899999999999999999886 4 343 35778999999987520    0       0000125567788


Q ss_pred             HHHhcCeEEecCCCcCC-CCeEEEEeec-ChHHHHHHHHHHHHHHHHHh
Q 042445          197 LAKEESVIVLPGITVGL-KDWLRITFAV-EPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       197 ll~~~gi~v~pg~~f~~-~~~iRls~~~-~~~~l~~~~~~l~~~~~~~~  243 (246)
                      ++.++||.+.||..|+. ++++|++++. +++++++++++|+++++++.
T Consensus       475 ll~~~gV~v~pG~~F~~~~~~iRis~~~~~~e~i~~~~~~l~~~l~~~~  523 (546)
T 2zy4_A          475 IADETGIVLLPGRGFGSNRPSGRASLANLNEYEYAAIGRALRKMADELY  523 (546)
T ss_dssp             HHHHHSCCCEESSCTTCSSCEEEEESSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCEEEeCccccCCCCCeEEEEeccCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999986 6789999997 88999999999999987765

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=100.00  E-value=2.6e-32  Score=233.49  Aligned_cols=225  Identities=16%  Similarity=0.161  Sum_probs=180.8

Q ss_pred             hhhhhhhc--cc----c-ccCCcCCCccCCChhhHHHHHHHH-HHcCCEEEEccccCCcccCC-C--CCcccccc----C
Q 042445            2 ELINQDIT--RE----F-SDFQVFHVGSGFSGSFVSPIAETA-KKLGIMVIANEVYGHLAFGN-T--PFVSMGVF----G   66 (246)
Q Consensus         2 e~~~~~~~--~~----~-~~~p~NPtG~~~~~~~~~~l~~~~-~~~~~~ii~De~y~~~~~~~-~--~~~~~~~~----~   66 (246)
                      |.+++.++  ++    + .++||||||.+++.+++++|+++| ++||+++|+||+|..+.+.+ .  .+.++..+    +
T Consensus       161 ~~l~~~l~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~  240 (423)
T 3ez1_A          161 DAVERLAGTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAG  240 (423)
T ss_dssp             HHHHHHHHSCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHT
T ss_pred             HHHHHHHhhCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccC
Confidence            45666662  32    2 458899999999999999999999 99999999999999766544 2  22233332    3


Q ss_pred             CcccEEEEcccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhh--ch-HHHHHHH
Q 042445           67 SIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEK--TE-EEFFSKI  142 (246)
Q Consensus        67 ~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~--~~-~~~~~~~  142 (246)
                      ..+++++++||||. +++|+|+||+++++        ++++.+..... .+++++++.|.++..++.+  .. ..++++.
T Consensus       241 ~~~~~i~~~S~sK~-~~~G~r~G~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~  311 (423)
T 3ez1_A          241 YPDRAFVFASTSKI-TFAGAGLGFVASSE--------DNIRWLSKYLGAQSIGPNKVEQARHVKFLTEYPGGLEGLMRDH  311 (423)
T ss_dssp             CTTSEEEEEESTTT-SCSSSSCEEEEECH--------HHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHSTTHHHHHHHHH
T ss_pred             CCCeEEEEeCchhh-ccCCcceEEEEeCH--------HHHHHHHHHHhhhccCCCHHHHHHHHHHHHhccchHHHHHHHH
Confidence            55789999999999 79999999999998        99999887744 3457899999999999986  33 5788888


Q ss_pred             HHHHHHHHHHHHHHhhc-CCC----CccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEec-CCCcCC---
Q 042445          143 IDILRETADKCCDRLKE-IPC----ITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLP-GITVGL---  213 (246)
Q Consensus       143 ~~~~~~~~~~l~~~L~~-~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p-g~~f~~---  213 (246)
                      ++.++++++.+.+.|.+ ++.    +. +..|++|+|+|++++..       +.+.+.+++.++||.+.| |..|+.   
T Consensus       312 ~~~~~~~~~~l~~~l~~~l~~~~~~~~-~~~p~~g~~~~~~~~~~-------~~~~~~~~l~~~gv~v~~~g~~~~~~~~  383 (423)
T 3ez1_A          312 AAIIAPKFRAVDEVLRAELGEGGEYAT-WTLPKGGYFISLDTAEP-------VADRVVKLAEAAGVSLTPAGATYPAGQD  383 (423)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTTSSEE-ECCCSBSSCEEEEESSS-------CHHHHHHHHHHTTEECCCTTTTSSTTCC
T ss_pred             HHHHHHHHHHHHHHHHHhcCcCCCceE-EeCCCccEEEEEECCCC-------cHHHHHHHHHHCCcEEecCcccccCCCC
Confidence            99999999988888865 433    44 56889999999998753       345667788899999999 666652   


Q ss_pred             --CCeEEEEeec-ChHHHHHHHHHHHHHHHHHh
Q 042445          214 --KDWLRITFAV-EPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       214 --~~~iRls~~~-~~~~l~~~~~~l~~~~~~~~  243 (246)
                        ++++||+++. +++++++++++|.+++++..
T Consensus       384 ~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~~~  416 (423)
T 3ez1_A          384 PHNRNLRLAPTRPPVEEVRTAMQVVAACIRLAT  416 (423)
T ss_dssp             SSSCEEEECCSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Confidence              6899999996 99999999999999998764

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=100.00  E-value=1.4e-31  Score=228.15  Aligned_cols=226  Identities=19%  Similarity=0.277  Sum_probs=180.9

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      |.+++.++++    ++++||||||.++|.+++++|+++|+++|+++|+||+|+++.+++.....+..  ..++++++.|+
T Consensus       165 ~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~--~~~~~i~~~s~  242 (409)
T 2gb3_A          165 QNLESFINERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSI--ESDKVVVIDSV  242 (409)
T ss_dssp             TTGGGGCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGS--CCTTEEEEEES
T ss_pred             HHHHHhhCcCCeEEEECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCcccc--CCCCEEEEecc
Confidence            4566655543    78899999999999999999999999999999999999998887632222221  13578999999


Q ss_pred             ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRL  157 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L  157 (246)
                      ||.|+++|+|+||+++++.       ++++.+......+.+++++.|.++.++|+. ...++++.++.++++++.+.+.|
T Consensus       243 sK~~g~~G~r~G~~~~~~~-------~l~~~l~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L  314 (409)
T 2gb3_A          243 SKKFSACGARVGCLITRNE-------ELISHAMKLAQGRLAPPLLEQIGSVGLLNL-DDSFFDFVRETYRERVETVLKKL  314 (409)
T ss_dssp             TTTTTCGGGCCEEEECSCH-------HHHHHHHHHHHHSCCCCHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhccCCccceEEEEEECcH-------HHHHHHHHHHhccCCCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999863       677777665433227899999999999975 36788999999999999999999


Q ss_pred             hcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHh-----cCeEEecCCCcCC-----CCeEEEEeecChHH
Q 042445          158 KEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKE-----ESVIVLPGITVGL-----KDWLRITFAVEPSA  227 (246)
Q Consensus       158 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~-----~gi~v~pg~~f~~-----~~~iRls~~~~~~~  227 (246)
                      +++ ++..+..|.+|+++|++++..      +..++...++++     +||.+.||..|+.     ++++|++++.++++
T Consensus       315 ~~~-g~~~~~~~~~~~~~~~~~~~~------~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~~~~e~  387 (409)
T 2gb3_A          315 EEH-GLKRFTKPSGAFYITAELPVE------DAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDL  387 (409)
T ss_dssp             HHT-TCCCBCCCSBSSEEEEECSSS------CHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECCSCHHH
T ss_pred             HHc-CceeeeCCCeeEEEEEEeCCC------CHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeCCCHHH
Confidence            987 666325788899999888621      355555555544     4999999988853     68999999988999


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 042445          228 LENGLGRMKAFYDRHAE  244 (246)
Q Consensus       228 l~~~~~~l~~~~~~~~~  244 (246)
                      +++++++|.++++++.+
T Consensus       388 i~~~~~~l~~~l~~~~~  404 (409)
T 2gb3_A          388 LSRAIDVLMEGLKMFCS  404 (409)
T ss_dssp             HHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhhh
Confidence            99999999999987653

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=100.00  E-value=3.6e-32  Score=227.89  Aligned_cols=201  Identities=15%  Similarity=0.194  Sum_probs=164.7

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccc-cCCcccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGV-FGSIVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~-~~~~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      ++++||||||.++|.+++++|+++|+ +|+++|+||+|.++...    .++.. .+..++++++.|+||.|+++|+|+||
T Consensus       151 ~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~----~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~  225 (356)
T 1fg7_A          151 YVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQ----ASLAGWLAEYPHLAILRTLSKAFALAGLRCGF  225 (356)
T ss_dssp             EEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGG----GCSGGGTTTCTTEEEEEESSSTTCCGGGCCEE
T ss_pred             EEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcCC----CcHHHHHhhCCCEEEEecchHhhcCchhhhEE
Confidence            77899999999999999999999999 99999999999987621    12222 24456899999999999999999999


Q ss_pred             EEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCC
Q 042445           91 LVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPE  170 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~  170 (246)
                      +++++        ++++.+......+ ++|++.|.++.++|.+....++++.++.++++++.+.+.|++++++. ...|.
T Consensus       226 ~~~~~--------~~~~~l~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~  295 (356)
T 1fg7_A          226 TLANE--------EVINLLMKVIAPY-PLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVE-QVFDS  295 (356)
T ss_dssp             EEECH--------HHHHHHHHHSCSS-CSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEE-EECCC
T ss_pred             EEeCH--------HHHHHHHHhcCCC-CCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhCCCce-EECCC
Confidence            99987        8999888775544 78999999999999853323588999999999999999999886543 24567


Q ss_pred             CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEec-CCCcCCCCeEEEEeecChHHHHHHHHHHHH
Q 042445          171 GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLP-GITVGLKDWLRITFAVEPSALENGLGRMKA  237 (246)
Q Consensus       171 ~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p-g~~f~~~~~iRls~~~~~~~l~~~~~~l~~  237 (246)
                      +|+|+|++++        +..++.. .|.++||.+.| |..|+.++++|++++ +++++++++++|++
T Consensus       296 ~~~~~~~~~~--------~~~~l~~-~L~~~gI~v~~~g~~~~~~~~iRis~~-~~~e~~~~~~~l~~  353 (356)
T 1fg7_A          296 ETNYILARFK--------ASSAVFK-SLWDQGIILRDQNKQPSLSGCLRITVG-TREESQRVIDALRA  353 (356)
T ss_dssp             SSSEEEEEET--------THHHHHH-HHHHTTEECEECTTSTTCTTEEEEECC-CHHHHHHHHHHHHT
T ss_pred             CCeEEEEECC--------CHHHHHH-HHHHCCEEEEECCCCCCCCCeEEEEeC-CHHHHHHHHHHHHh
Confidence            8999999886        1445544 45789999999 888877789999998 56778888887764

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=100.00  E-value=2.2e-32  Score=230.04  Aligned_cols=217  Identities=24%  Similarity=0.365  Sum_probs=177.8

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccC-CcccEEEEcc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFG-SIVPLLTLGS   76 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~~~i~~~s   76 (246)
                      |.+++.++++    ++++||||||.+++.+    |.++|++||+++|+||+|.++.+++. +.++..+. ..++++++.|
T Consensus       145 ~~l~~~l~~~~~~v~~~~p~nptG~~~~~~----l~~~~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~~~~i~~~s  219 (370)
T 2z61_A          145 ESLEEALSDKTKAIIINSPSNPLGEVIDRE----IYEFAYENIPYIISDEIYNGLVYEGK-CYSAIEFDENLEKTILING  219 (370)
T ss_dssp             HHHHHHCCSSEEEEEEESSCTTTCCCCCHH----HHHHHHHHCSEEEEECTTTTCBSSSC-CCCGGGTCTTCSSEEEEEE
T ss_pred             HHHHHhcccCceEEEEcCCCCCcCcccCHH----HHHHHHHcCCEEEEEcchhhcccCCC-CcCHHHccCCCCcEEEEec
Confidence            4455555433    7789999999999976    99999999999999999999988763 33444442 3567899999


Q ss_pred             cccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445           77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD  155 (246)
Q Consensus        77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  155 (246)
                      +||.++++|+|+||+++++        ++++.+..... .++++|++.|.++.++|+...+.++++.++.++++++.+.+
T Consensus       220 ~sK~~~~~G~r~G~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  291 (370)
T 2z61_A          220 FSKLYAMTGWRIGYVISND--------EIIEAILKLQQNLFISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLK  291 (370)
T ss_dssp             STTTTTCGGGCCEEEECCH--------HHHHHHHHHHHHHTSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChhccCCccceEEEEEECH--------HHHHHHHHHHhhcccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHH
Confidence            9999989999999999998        89998877643 34478999999999999741267888999999999999999


Q ss_pred             HhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHH
Q 042445          156 RLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLG  233 (246)
Q Consensus       156 ~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~  233 (246)
                      .|+++ ++. +..|++|+++|++++.       +..++...+++++||.+.||..|+.  ++++|++++.++++++++++
T Consensus       292 ~L~~~-g~~-~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~~~~~~i~~~~~  362 (370)
T 2z61_A          292 YVKDF-GWE-VNNPIGAYYVFPNIGE-------DGREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYANSYENIKEGLE  362 (370)
T ss_dssp             HHHHT-TCB-CCCCCBTTEECCBCSS-------CHHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECCSCHHHHHHHHH
T ss_pred             HHHHc-CCe-ecCCCcceEEEEecCC-------CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEeCCHHHHHHHHH
Confidence            99988 676 4678889999987753       2556666555589999999998875  78999999998999999999


Q ss_pred             HHHHHHH
Q 042445          234 RMKAFYD  240 (246)
Q Consensus       234 ~l~~~~~  240 (246)
                      +|.++++
T Consensus       363 ~l~~~l~  369 (370)
T 2z61_A          363 RIKEFLN  369 (370)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHh
Confidence            9998874

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=100.00  E-value=1.5e-32  Score=241.47  Aligned_cols=233  Identities=16%  Similarity=0.143  Sum_probs=177.3

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHH-HcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAK-KLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGS   76 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~-~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s   76 (246)
                      +.+++.+.++    ++++||||||.++|.+++++|+++|+ +||+++|+||+|.++.++.   .++.... .+++++++|
T Consensus       235 ~~l~~~l~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~---~~~~~~~-~~~~i~~~S  310 (533)
T 3f6t_A          235 NEIEKLKDPSIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNF---KSIYSVV-PYNTMLVYS  310 (533)
T ss_dssp             HHHHHHSCTTEEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTC---CCHHHHS-GGGEEEEEE
T ss_pred             HHHHHHhCCCCeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCc---cCHhhcC-CCCEEEEec
Confidence            3455555543    77799999999999999999999999 6899999999999888653   2333332 368999999


Q ss_pred             cccccccCCceEEEEEeeCCCCCcchhhHHHHH--------------------------------HHHh-hhcCCCCchH
Q 042445           77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSI--------------------------------KIFL-NISSDPATFI  123 (246)
Q Consensus        77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l--------------------------------~~~~-~~~~~~~~~~  123 (246)
                      |||.||++|+|+||+++++...+.   .+++.+                                .... ..+++++++.
T Consensus       311 ~SK~~g~~G~RiG~l~~~~~~~~~---~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~  387 (533)
T 3f6t_A          311 YSKLFGCTGWRLGVIALNEKNVFD---DNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQ  387 (533)
T ss_dssp             SHHHHTCGGGCEEEEEEESSCHHH---HHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHH
T ss_pred             CcccCCCcccceEEEEECcHHHHH---HHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHH
Confidence            999999999999999998830000   132221                                1121 2344778888


Q ss_pred             HHH----HHHHHh-----hchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEecccc--ccC------
Q 042445          124 QGA----VPQILE-----KTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSL--LEG------  186 (246)
Q Consensus       124 q~~----~~~~l~-----~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~------  186 (246)
                      |.+    +..+|.     ...+.++++.++.++++++.+.+.|. + ++. +..|++|+|+|++++...  ..+      
T Consensus       388 q~a~a~~a~~~L~~~~g~~~~~~~~~~~~~~~~~r~~~l~~~L~-~-~~~-~~~~~~g~~~~~~l~~~~~~~~g~~~~~~  464 (533)
T 3f6t_A          388 QIMEALFSMTHLLTSTNGGSDDPYIDIARKLVSERYDQLHDAMQ-A-PKD-ETDTNTHYYSLIDIYRLAEKIYGKEFRDY  464 (533)
T ss_dssp             HHHHHHHHHHHHTTCBGGGTBCHHHHHHHHHHHHHHHHHHHHHT-C-CCC-CSTTBCCSEEEEEHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHhcC-C-Ccc-ccCCCceEEEEEehHhhhhhccchHHHHH
Confidence            888    445564     23468899999999999999999997 6 455 568899999999886310  000      


Q ss_pred             ---CCChHHHHHHHHHhcCeEEecCCCcCC-CCeEEEEeec-ChHHHHHHHHHHHHHHHHHhh
Q 042445          187 ---INSDMEFALKLAKEESVIVLPGITVGL-KDWLRITFAV-EPSALENGLGRMKAFYDRHAE  244 (246)
Q Consensus       187 ---~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~iRls~~~-~~~~l~~~~~~l~~~~~~~~~  244 (246)
                         ..++.+++..+++++||.+.||..|+. ++++|+|++. +++++++++++|.++++++.+
T Consensus       465 ~~~~~~~~~~~~~ll~~~GV~v~pg~~f~~~~~~iRls~a~~~~e~i~~~i~~L~~~l~~~~~  527 (533)
T 3f6t_A          465 LTNNFEQVDFLLKLAEKNGVVLVDGVGFGAKPGELRVSQANLPTEDYALIGKQVLELLKEYYE  527 (533)
T ss_dssp             HHHHCCHHHHHHHHHHHTTSSSCTTEEECSSTTEEEEESSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhccCCHHHHHHHHHHhCCEEEeCCcccCCCCCEEEEEEeeCCHHHHHHHHHHHHHHHHHHHH
Confidence               013667888888899999999999987 7899999995 899999999999999987653

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=100.00  E-value=4.9e-32  Score=227.25  Aligned_cols=213  Identities=13%  Similarity=0.150  Sum_probs=176.3

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      |.+++.++++    ++++||||||.+++.+++.+|++.|++ |+++|+||+|.++.+ +.........+..++++++.|+
T Consensus       146 ~~l~~~i~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~-~~~li~De~~~~~~~-~~~~~~~~~~~~~~~~i~~~s~  223 (363)
T 3ffh_A          146 EGMLNAIDEKTTIVWICNPNNPTGNYIELADIQAFLDRVPS-DVLVVLDEAYIEYVT-PQPEKHEKLVRTYKNLIITRTF  223 (363)
T ss_dssp             HHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSCT-TSEEEEECTTGGGCS-SCCCCCGGGGGTCTTEEEEEES
T ss_pred             HHHHHhcccCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCC-CcEEEEeCchHhhcC-ccccCHHHHhhcCCCEEEEeec
Confidence            4555555543    788999999999999999999988887 999999999999887 5444444445556789999999


Q ss_pred             ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRL  157 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L  157 (246)
                      ||.++++|+|+||+++++        ++++.+...... +++|++.+.++..+++.  ..++++.++.++++++.+.+.|
T Consensus       224 sK~~g~~G~r~G~~~~~~--------~~~~~l~~~~~~-~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l  292 (363)
T 3ffh_A          224 SKIYGLASARVGYGIADK--------EIIRQLNIVRPP-FNTTSIGQKLAIEAIKD--QAFIGECRTSNANGIKQYEAFA  292 (363)
T ss_dssp             SSTTCCSSCCCEEEEECH--------HHHHHHHHTCCS-CCCBHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcCchhceeeeecCH--------HHHHHHHHhCCC-CCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999987        999988877554 38899999999999983  4788999999999999999999


Q ss_pred             hcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHH
Q 042445          158 KEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKA  237 (246)
Q Consensus       158 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~  237 (246)
                      ++++++..  .+..|+|+|++++.       +..++ .+.|.++||.+.||..|+.++++|++++ ++++++++++.|++
T Consensus       293 ~~~~g~~~--~~~~~~~~~~~~~~-------~~~~~-~~~l~~~gi~v~~g~~~~~~~~iRis~~-~~~~i~~~~~~l~~  361 (363)
T 3ffh_A          293 KRFEKVKL--YPANGNFVLIDLGI-------EAGTI-FSYLEKNGYITRSGAALGFPTAVRITIG-KEEDNSAVIALLEK  361 (363)
T ss_dssp             HHCTTCEE--CCCCSSEEEEECSS-------CHHHH-HHHHHHTTEECEETTTTTCTTEEEEECC-CHHHHHHHHHHHHH
T ss_pred             hhCCCceE--CCCCCeEEEEECCC-------CHHHH-HHHHHHCCeEEEeCccCCCCCeEEEECC-CHHHHHHHHHHHHH
Confidence            98667763  35567888988763       14444 4556678999999999988999999998 88889999998877


Q ss_pred             H
Q 042445          238 F  238 (246)
Q Consensus       238 ~  238 (246)
                      +
T Consensus       362 ~  362 (363)
T 3ffh_A          362 L  362 (363)
T ss_dssp             H
T ss_pred             h
Confidence            5

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=100.00  E-value=1.4e-31  Score=229.81  Aligned_cols=223  Identities=14%  Similarity=0.081  Sum_probs=177.8

Q ss_pred             hhhhhhh-ccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCc----cc-cccCC-ccc
Q 042445            2 ELINQDI-TRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFV----SM-GVFGS-IVP   70 (246)
Q Consensus         2 e~~~~~~-~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~----~~-~~~~~-~~~   70 (246)
                      +.+++.+ +++    ++++||||||.+++.+++++|+++|++||+++|+||+|+++.+++....    ++ ..+.. .++
T Consensus       172 ~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (437)
T 3g0t_A          172 EKLESYLQTGQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDN  251 (437)
T ss_dssp             HHHHHHHTTTCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSC
T ss_pred             HHHHHHHhcCCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCc
Confidence            4455555 332    6789999999999999999999999999999999999999888732111    11 33433 678


Q ss_pred             EEEEcccccccccCCceEEEEEeeCCCCCcchhhHHH-H-----------------HHHHhh-hcCCCCchHHHHHHHHH
Q 042445           71 LLTLGSISKRGIVPGLRLGWLVTSDPNGILQDSGIVD-S-----------------IKIFLN-ISSDPATFIQGAVPQIL  131 (246)
Q Consensus        71 ~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~-~-----------------l~~~~~-~~~~~~~~~q~~~~~~l  131 (246)
                      ++++.|+||.++++|+|+||+++++        ++++ .                 +..... .+++++++.|.++..++
T Consensus       252 ~i~~~s~sK~~~~~G~r~G~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l  323 (437)
T 3g0t_A          252 YILALSSSKAFSYAGQRIGVLMISG--------KLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAML  323 (437)
T ss_dssp             EEEEEESTTTTSCGGGCCEEEEECH--------HHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHHH
T ss_pred             EEEEEcCccCCCCccceeEEEEECH--------HHhhhhhhcccccccccchhHHHHHHHHhhhcCCCCHHHHHHHHHHH
Confidence            9999999999999999999999998        8888 6                 655433 34588999999999999


Q ss_pred             hhchHHH---HHHHHHHHHHHHHHHHHHhhcCCCCccc------cCCCCceEEEEEeccccccCCCChHHHHHHHHHhcC
Q 042445          132 EKTEEEF---FSKIIDILRETADKCCDRLKEIPCITCP------KKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEES  202 (246)
Q Consensus       132 ~~~~~~~---~~~~~~~~~~~~~~l~~~L~~~~~~~~~------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~g  202 (246)
                      ... ..+   +++.++.++++++.+.+.|+++ ++..+      .++.+++|+|++++..      +..++ .+.|.++|
T Consensus       324 ~~~-~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l-~~~L~~~g  394 (437)
T 3g0t_A          324 KAC-NDGEYNFRDSVIEYGRKARIMKKMFLDN-GFNIVYDKDGNEPLADGFYFTVGYKGM------DSSKL-IEKFVRYG  394 (437)
T ss_dssp             HHH-HTTSCCHHHHHHHHHHHHHHHHHHHHTT-TEEESSCEETTEECCSSSEEEEEETTC------CHHHH-HHHHHHTT
T ss_pred             hCc-HhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCEEeccccCCCCCceeEEEEEecCCC------CHHHH-HHHHHHcC
Confidence            852 223   8899999999999999999998 77632      1338999999998721      24455 45566789


Q ss_pred             eEEecCCCcCC--CCeEEEEeec-ChHHHHHHHHHHHHHHHH
Q 042445          203 VIVLPGITVGL--KDWLRITFAV-EPSALENGLGRMKAFYDR  241 (246)
Q Consensus       203 i~v~pg~~f~~--~~~iRls~~~-~~~~l~~~~~~l~~~~~~  241 (246)
                      |.+.|+..|+.  ++++|+|++. +++++++++++|.+++++
T Consensus       395 i~v~~~~~~~~~~~~~iRis~~~~~~e~i~~~~~~l~~~~~~  436 (437)
T 3g0t_A          395 MCAITLKTTGSKRNEAMRICTSLLPESQFPDLEKRLQMLNAE  436 (437)
T ss_dssp             EECEESTTTTCCCTTCEEEECSSSCGGGHHHHHHHHHHHHHH
T ss_pred             eEEeeccccCCCCCCEEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence            99999998876  3899999997 899999999999998754

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=100.00  E-value=1.6e-31  Score=224.37  Aligned_cols=207  Identities=17%  Similarity=0.217  Sum_probs=166.2

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      ++++||||||.++|.+++++|+++|++||+++|+||+|.++.+++..  .+..++..++++++.|+||.|+++|+|+||+
T Consensus       151 ~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~--~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~  228 (364)
T 1lc5_A          151 FLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETG--FIPALKDNPHIWVLRSLTKFYAIPGLRLGYL  228 (364)
T ss_dssp             EEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCC--SGGGCTTCTTEEEEEESTTTTTCTTTCCEEE
T ss_pred             EEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccCccc--hhhHhccCCCEEEEEECchhhcCCccceEEE
Confidence            77899999999999999999999999999999999999998875322  2222344568899999999999999999999


Q ss_pred             E-eeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCC
Q 042445           92 V-TSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPE  170 (246)
Q Consensus        92 ~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~  170 (246)
                      + +++        ++++.+......+ ++|++.|.++.++|+.  ..++++.++.++++++.+.+.|+++|++.. . +.
T Consensus       229 ~~~~~--------~~~~~l~~~~~~~-~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~-~~  295 (364)
T 1lc5_A          229 VNSDD--------AAMARMRRQQMPW-SVNALAALAGEVALQD--SAWQQATWHWLREEGARFYQALCQLPLLTV-Y-PG  295 (364)
T ss_dssp             ECCCH--------HHHHHHHHHSCTT-CSCHHHHHHHHHGGGC--HHHHHHHHHHHHHHHHHHHHHHHTSTTEEE-C-CC
T ss_pred             EECCH--------HHHHHHHHhCCCC-CCCHHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHhcCCCCEE-C-CC
Confidence            9 777        8888887765433 7899999999999985  568999999999999999999998888763 3 45


Q ss_pred             CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHHHHHHHHH
Q 042445          171 GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       171 ~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l~~~~~~~  242 (246)
                      +|+|+|++++..       ..++. +.|.++||.+.||..|+.  ++++|++++ ++++++++++.|++++++.
T Consensus       296 ~g~~~~~~~~~~-------~~~l~-~~l~~~gi~v~~g~~~~~~~~~~iRis~~-~~~~~~~l~~~l~~~~~~~  360 (364)
T 1lc5_A          296 RANYLLLRCERE-------DIDLQ-RRLLTQRILIRSCANYPGLDSRYYRVAIR-SAAQNERLLAALRNVLTGI  360 (364)
T ss_dssp             SSSEEEEEESCT-------TCCHH-HHHHTTTEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHHHC---
T ss_pred             CCeEEEEECCCc-------HHHHH-HHHHHCCcEEeeCcccCCCCCCEEEEEeC-CHHHHHHHHHHHHHHhhcc
Confidence            677888877631       22343 445578999999998854  689999988 4666777777777776654

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=100.00  E-value=1.8e-31  Score=223.40  Aligned_cols=207  Identities=14%  Similarity=0.151  Sum_probs=166.2

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      ++++||||||.+++.+++++|+++|++||+++|+||+|.++.++ .........+..++++++.|+||.++++|+|+||+
T Consensus       149 ~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~-~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~  227 (361)
T 3ftb_A          149 IIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGD-PSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYG  227 (361)
T ss_dssp             EEETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCC-TTSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEE
T ss_pred             EEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCC-cccchhHhcccCCCEEEEeeChhhcCCCCcceeEE
Confidence            88999999999999999999999999999999999999999887 33444444455678999999999999999999999


Q ss_pred             E-eeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCC
Q 042445           92 V-TSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPE  170 (246)
Q Consensus        92 ~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~  170 (246)
                      + .++        ++++.+......+ ++|++.+.++..+++.  ..++++.++.++++++.+.+.|+++|++.. ..+.
T Consensus       228 ~~~~~--------~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~  295 (361)
T 3ftb_A          228 ITNNK--------EIAAKIKAKQNPW-NINCFAEMAAINCLKD--TNYIEESLLWIKKERKRFIEELNKIGFIKR-VFSP  295 (361)
T ss_dssp             EESCH--------HHHHHHHTTSCTT-CSCHHHHHHHHHTSSC--HHHHHHHHHHHHHHHHHHHHHHHHSSSEEE-EECC
T ss_pred             EeCCH--------HHHHHHHhhCCCC-CCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhCCCCce-ecCC
Confidence            9 666        8888888765544 8899999999999984  678999999999999999999999887751 2445


Q ss_pred             CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHHHHHH
Q 042445          171 GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKAFY  239 (246)
Q Consensus       171 ~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l~~~~  239 (246)
                      .|.|+|++++..      +..++ .+.|.++||.+.||..|+.  ++++|++++ +++++++.++.|.++.
T Consensus       296 ~~~~~~~~~~~~------~~~~l-~~~l~~~gi~v~~g~~~~~~~~~~iRis~~-~~~~~~~l~~~l~~~~  358 (361)
T 3ftb_A          296 HANFVLCRLENI------SGEKL-YDSLLKEDIVIRRCCNFIGLDDSFVRFAIK-DEKKNTKFLRALKGVE  358 (361)
T ss_dssp             SSSEEEEEESSS------CHHHH-HHHHHTTTEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCC------CHHHH-HHHHHHCCeEEeeCccCCCCCCCEEEEEcC-CHHHHHHHHHHHHHHH
Confidence            577788888641      24455 4456667999999998875  689999998 4444444554444443

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=100.00  E-value=7.4e-32  Score=225.33  Aligned_cols=215  Identities=13%  Similarity=0.168  Sum_probs=177.4

Q ss_pred             hhhhhhhc--cc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCc-ccEEEE
Q 042445            2 ELINQDIT--RE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSI-VPLLTL   74 (246)
Q Consensus         2 e~~~~~~~--~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~-~~~i~~   74 (246)
                      +.+++.++  ++    ++++||||||.+++.+++.+|+++| ++|+++|+||+|.++.+++.....+...+.. ++++++
T Consensus       130 ~~l~~~l~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~  208 (354)
T 3ly1_A          130 EGLKAAVAAYSGPSIVYLVNPNNPTGTITPADVIEPWIASK-PANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILL  208 (354)
T ss_dssp             HHHHHHHHTCSSCEEEEEESSCTTTCCCCCHHHHHHHHHTC-CTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEE
T ss_pred             HHHHHHhccCCCCCEEEEeCCCCCcCCCcCHHHHHHHHHhC-CCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEE
Confidence            45666665  33    7789999999999999999999999 8999999999999998876544444444444 789999


Q ss_pred             cccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 042445           75 GSISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCC  154 (246)
Q Consensus        75 ~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~  154 (246)
                      +|+||.|+++|+|+||+++++        ++++.+...... +++|++.+.++..+++.  ..++++.++.++++++.+.
T Consensus       209 ~s~sK~~g~~G~r~G~~~~~~--------~~~~~~~~~~~~-~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~  277 (354)
T 3ly1_A          209 KTFSKIHAMAGMRVGYAVAHP--------TVIALMGRYVAG-EKINFSGVDAALASMND--SAFITYSKKSNDVSRQILL  277 (354)
T ss_dssp             EESSSTTCCGGGCCEEEECCH--------HHHHHHGGGTTC-SCCCHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHH
T ss_pred             eeChhhccChhhhheeeecCH--------HHHHHHHHhcCC-CCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999988        999988877555 48999999999999984  4788999999999999999


Q ss_pred             HHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHH
Q 042445          155 DRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGR  234 (246)
Q Consensus       155 ~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~  234 (246)
                      +.|+++ ++..  .+..|+|+|++++.       +..++ .+.|.++||.+. |.+++.++++|++++ ++++++++++.
T Consensus       278 ~~l~~~-~~~~--~~~~~~~~~~~~~~-------~~~~~-~~~l~~~gi~v~-g~~~~~~~~iRis~~-~~~~i~~~~~~  344 (354)
T 3ly1_A          278 KALEDL-KLPY--LPSEGNFVFHQLVV-------PLKDY-QTHMADAGVLIG-RAFPPADNWCRISLG-TPQEMQWVADT  344 (354)
T ss_dssp             HHHHHH-TCCB--CCCCSSEEEEECSS-------CHHHH-HHHHHHTTEECC-CCCTTCTTEEEEECC-CHHHHHHHHHH
T ss_pred             HHHHHC-CCeE--CCCCceEEEEECCC-------CHHHH-HHHHHHCCEEEe-ecCCCCCCEEEEEcC-CHHHHHHHHHH
Confidence            999987 6663  35567889988864       14444 555668999998 776666899999998 78889999999


Q ss_pred             HHHHHHH
Q 042445          235 MKAFYDR  241 (246)
Q Consensus       235 l~~~~~~  241 (246)
                      |.+++++
T Consensus       345 l~~~l~~  351 (354)
T 3ly1_A          345 MREFRKK  351 (354)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9998865

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=100.00  E-value=6.9e-35  Score=247.26  Aligned_cols=216  Identities=15%  Similarity=0.179  Sum_probs=179.3

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC--cccEEEEcccccccccCCceEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS--IVPLLTLGSISKRGIVPGLRLG   89 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~--~~~~i~~~s~sK~~~~~g~r~G   89 (246)
                      ++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++..+.++..+..  .++++++.|+||.|+++|+|+|
T Consensus       169 ~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G  248 (392)
T 3b1d_A          169 LLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNS  248 (392)
Confidence            77899999999999999999999999999999999999999987655556655544  5689999999999999999999


Q ss_pred             EEEeeCCCCCcchhhHHHHHHHHhhhc--CCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc-CCCCccc
Q 042445           90 WLVTSDPNGILQDSGIVDSIKIFLNIS--SDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKE-IPCITCP  166 (246)
Q Consensus        90 ~i~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~  166 (246)
                      |+++++.       ++++.+......+  .++|++.|.++..+|.. .+.++++.++.++++++.+.+.|++ +|++. +
T Consensus       249 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~  319 (392)
T 3b1d_A          249 YAIIENP-------TLCAQFKHQQLVNNHHEVSSLGYIATETAYRY-GKPWLVALKAVLEENIQFAVEYFAQEAPRLK-V  319 (392)
Confidence            9999862       4788787664433  25799999999999884 3578899999999999999999988 77876 5


Q ss_pred             cCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHHHHHHH
Q 042445          167 KKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKAFYD  240 (246)
Q Consensus       167 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l~~~~~  240 (246)
                      ..|.+++++|++++....    +..++...+++++||.+.||..|+.  ++++|++++.+++++++++++|.++++
T Consensus       320 ~~~~~~~~~~i~~~~~~~----~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~e~i~~~l~~l~~~l~  391 (392)
T 3b1d_A          320 MKPQGTYLIWLDFSDYGL----TDDALFTLLHDQAKVILNRGSDYGSEGELHARLNIAAPKSLVEEICKRIVCCLP  391 (392)
Confidence            788999999988864211    2445555544589999999998874  689999999888899999999998875

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=100.00  E-value=8e-32  Score=230.15  Aligned_cols=208  Identities=13%  Similarity=0.077  Sum_probs=167.7

Q ss_pred             cccCC-cCCCccCCChhhHHHHHHHHH------HcCCEEEEccccCCcccCCCCCcccc-ccC-Cccc--EEEEcccccc
Q 042445           12 FSDFQ-VFHVGSGFSGSFVSPIAETAK------KLGIMVIANEVYGHLAFGNTPFVSMG-VFG-SIVP--LLTLGSISKR   80 (246)
Q Consensus        12 ~~~~p-~NPtG~~~~~~~~~~l~~~~~------~~~~~ii~De~y~~~~~~~~~~~~~~-~~~-~~~~--~i~~~s~sK~   80 (246)
                      ++++| |||||.+++.+++++|+++|+      +||+++|+||+|.++.+++..+.++. ... ..++  +++++||||.
T Consensus       184 i~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~  263 (418)
T 3rq1_A          184 IFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKG  263 (418)
T ss_dssp             EEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEEESTTT
T ss_pred             EEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEEEeCCCC
Confidence            78889 999999999999999999999      89999999999999887653222221 121 1234  6899999999


Q ss_pred             cccCCceEEEEEe---eCCCCCcchhhHHHHHHHHhh-----hcCCCCchHHHHHHHHHhhch-----HHHHHHHHHHHH
Q 042445           81 GIVPGLRLGWLVT---SDPNGILQDSGIVDSIKIFLN-----ISSDPATFIQGAVPQILEKTE-----EEFFSKIIDILR  147 (246)
Q Consensus        81 ~~~~g~r~G~i~~---~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~q~~~~~~l~~~~-----~~~~~~~~~~~~  147 (246)
                      |+++|+|+||+++   ++        ++++.+.....     .+++++.++|.++..++++..     ...+++.++.++
T Consensus       264 ~~~~G~r~G~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~  335 (418)
T 3rq1_A          264 FTMYGQRVGAMIGISDDE--------EIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIR  335 (418)
T ss_dssp             TTCCSSCCEEEEEEESSH--------HHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CcCcCCcceEEEEEeCCH--------HHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998   66        88888876532     234689999999999998642     234556778899


Q ss_pred             HHHHHHHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec-ChH
Q 042445          148 ETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV-EPS  226 (246)
Q Consensus       148 ~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~-~~~  226 (246)
                      ++++.+.+.|+++ |+. +..|.+|+|+|++++        +..++ .+.|.++||.+.||.     +++|+|++. +++
T Consensus       336 ~~~~~l~~~L~~~-g~~-~~~~~~~~~~~~~~~--------~~~~~-~~~l~~~gi~v~~g~-----~~iRis~~~~~~~  399 (418)
T 3rq1_A          336 DRADIFKQEAAQV-GLP-MLPYRGGFFITIPTD--------SANAI-CEELKKEHIYVIALA-----NGIRIAACGIPKC  399 (418)
T ss_dssp             HHHHHHHHHHHHH-TCC-CCCCCSSSEEEEECT--------THHHH-HHHHHHTTEECEECS-----SEEEEEGGGSCHH
T ss_pred             HHHHHHHHHHHhc-CCC-CCCCCceEEEEcCCC--------CHHHH-HHHHHhCCEEEecCC-----CCeEEEEecCCHH
Confidence            9999999999887 676 568899999998764        24455 457789999999974     789999985 999


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 042445          227 ALENGLGRMKAFYDRHA  243 (246)
Q Consensus       227 ~l~~~~~~l~~~~~~~~  243 (246)
                      ++++++++|.++++++.
T Consensus       400 ~i~~~~~~l~~~l~~~~  416 (418)
T 3rq1_A          400 QMTGLAEKIYNAMKSLG  416 (418)
T ss_dssp             HHTTHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999998764

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=99.98  E-value=7.5e-31  Score=225.79  Aligned_cols=217  Identities=16%  Similarity=0.250  Sum_probs=171.6

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      ++++||||||.++|.+++++|+++|++||+++|+||+|+.+.... .+.... ....++++++.|+||. +++|+|+||+
T Consensus       211 ~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~-~~~~~~-~~~~~~~i~~~S~sK~-~~~G~r~G~~  287 (444)
T 3if2_A          211 CCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNI-IYSDAH-LNWDNNTILCFSLSKI-GLPGMRTGII  287 (444)
T ss_dssp             EEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCC-BCSCCC-CCCCTTEEEEEESTTT-TCGGGCCEEE
T ss_pred             EeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCccccc-cccccc-ccCCCCEEEEechhhc-cCCCCceEEE
Confidence            778999999999999999999999999999999999998543111 111111 1234689999999997 8999999999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhch-HHHHHH-HHHHHHHHHHHHHHHhhc-CCCCc-cc
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTE-EEFFSK-IIDILRETADKCCDRLKE-IPCIT-CP  166 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~-~~~~~~-~~~~~~~~~~~l~~~L~~-~~~~~-~~  166 (246)
                      ++++        ++++.+..... .+++++++.|.++..++.... ..+..+ .++.++++++.+.+.|++ ++++. .+
T Consensus       288 ~~~~--------~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  359 (444)
T 3if2_A          288 VADA--------KVIEAVSAMNAVVNLAPTRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMI  359 (444)
T ss_dssp             ECCH--------HHHHHHHHHHHHHHSSCCCHHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEE
T ss_pred             EECH--------HHHHHHHHHHHhccCCCChHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceE
Confidence            9988        89998887643 455789999999999998654 344444 778889999999999876 66432 24


Q ss_pred             cCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC----------CCeEEEEeecChHHHHHHHHHHH
Q 042445          167 KKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL----------KDWLRITFAVEPSALENGLGRMK  236 (246)
Q Consensus       167 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----------~~~iRls~~~~~~~l~~~~~~l~  236 (246)
                      ..|.+|+++|++++....    +..++ ...|.++||.+.||..|..          ++++||+++.+++++++++++|.
T Consensus       360 ~~~~~g~~~~~~~~~~~~----~~~~l-~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~~iRis~~~~~e~i~~~l~~l~  434 (444)
T 3if2_A          360 HKPEGAIFLWLWFKDLPI----STLDL-YERLKAKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAADEQTLIDGIKVIG  434 (444)
T ss_dssp             ECCCBSSEEEEEETTCSS----CHHHH-HHHHHHTTEECEEGGGSCTTCCCTTCSGGGSEEEEESSSCHHHHHHHHHHHH
T ss_pred             ecCCccEEEEEEcCCCCC----CHHHH-HHHHHHCCeEEecchhhcCCCCCcccccCCCeEEEEEeCCHHHHHHHHHHHH
Confidence            578899999999875211    34444 5567889999999998854          26899999999999999999999


Q ss_pred             HHHHHHhh
Q 042445          237 AFYDRHAE  244 (246)
Q Consensus       237 ~~~~~~~~  244 (246)
                      +++++..+
T Consensus       435 ~~~~~~~~  442 (444)
T 3if2_A          435 EVVRELYD  442 (444)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHc
Confidence            99988764

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=99.98  E-value=7.9e-32  Score=226.14  Aligned_cols=214  Identities=14%  Similarity=0.159  Sum_probs=174.3

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCccc--CC-CCCccccccCCcccEEEE
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAF--GN-TPFVSMGVFGSIVPLLTL   74 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~--~~-~~~~~~~~~~~~~~~i~~   74 (246)
                      |.+++.++++    ++++||||||.+++.+++.+|+++| ++|+++|+||+|.++.+  .+ .........+..++++++
T Consensus       144 ~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  222 (365)
T 3get_A          144 KKLYETHKDEIKLIFLCLPNNPLGECLDASEATEFIKGV-NEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYL  222 (365)
T ss_dssp             HHHHHHTTTTEEEEEEESSCTTTCCCCCHHHHHHHHHTS-CTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEE
T ss_pred             HHHHHHhCCCCCEEEEcCCCCCCCCCcCHHHHHHHHHhC-CCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEE
Confidence            4556666543    7789999999999999999999998 57999999999998885  33 223333333445689999


Q ss_pred             cccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 042445           75 GSISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCC  154 (246)
Q Consensus        75 ~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~  154 (246)
                      +|+||.|+++|+|+||+++++        ++++.+......+ ++|++.|.++..+++.  ..++++.++.++++++.+.
T Consensus       223 ~s~sK~~~~~G~r~G~~~~~~--------~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~  291 (365)
T 3get_A          223 GTFSKLYGLGGLRIGYGIANA--------NIISAFYKLRAPF-NVSNLALKAAVAAMDD--DEFTEKTLENNFSQMELYK  291 (365)
T ss_dssp             EESSSTTSCTTTCCEEEEECH--------HHHHHHHHHSCTT-CSCHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHH
T ss_pred             eecchHhcCcchheEEEEcCH--------HHHHHHHHhcCCC-CcCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999987        9999888775544 7899999999999984  4789999999999999999


Q ss_pred             HHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHH
Q 042445          155 DRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGR  234 (246)
Q Consensus       155 ~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~  234 (246)
                      +.|+++ ++..  .+..|.|+|++++..      +..++ .+.|.++||.+.||..|+ ++++|++++ ++++++++++.
T Consensus       292 ~~l~~~-g~~~--~~~~~~~~~~~~~~~------~~~~~-~~~l~~~gi~v~~g~~~~-~~~iRis~~-~~~~i~~l~~~  359 (365)
T 3get_A          292 EFAKKH-NIKI--IDSYTNFITYFFDEK------NSTDL-SEKLLKKGIIIRNLKSYG-LNAIRITIG-TSYENEKFFTE  359 (365)
T ss_dssp             HHHHHT-TCEE--CCCSSSEEEEECSSS------CHHHH-HHHHHTTTEECEECGGGT-CSEEEEECC-CHHHHHHHHHH
T ss_pred             HHHHhC-CCEE--CCCCCeEEEEECCCC------CHHHH-HHHHHHCCEEEEECccCC-CCEEEEEcC-CHHHHHHHHHH
Confidence            999988 6763  455677789888642      24444 555667899999999998 899999998 78889999999


Q ss_pred             HHHHH
Q 042445          235 MKAFY  239 (246)
Q Consensus       235 l~~~~  239 (246)
                      |++++
T Consensus       360 l~~~l  364 (365)
T 3get_A          360 FDKIL  364 (365)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            88775

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=99.97  E-value=5.1e-31  Score=221.37  Aligned_cols=211  Identities=15%  Similarity=0.221  Sum_probs=175.1

Q ss_pred             hhhhhhhcc-c----cccCCcCCCccCCChhhHHHHHHHHHHc--CCEEEEccccCCcccCCCCCccccccCCcccEEEE
Q 042445            2 ELINQDITR-E----FSDFQVFHVGSGFSGSFVSPIAETAKKL--GIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTL   74 (246)
Q Consensus         2 e~~~~~~~~-~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~--~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~   74 (246)
                      |.+++.+++ +    ++++||||||.+++.+++++|+++|++|  |+++|+||+|.++...+  .  ...++..++++++
T Consensus       147 ~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~--~--~~~~~~~~~~i~~  222 (367)
T 3euc_A          147 GAMLAAMAEHQPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQES--W--MSRLTDFGNLLVM  222 (367)
T ss_dssp             HHHHHHHHHHCCSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCC--S--GGGGGTCTTEEEE
T ss_pred             HHHHHHhhccCCCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccc--h--HHHHhhCCCEEEE
Confidence            455565554 3    7789999999999999999999999999  99999999999877432  2  1233455688999


Q ss_pred             cccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 042445           75 GSISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCC  154 (246)
Q Consensus        75 ~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~  154 (246)
                      .|+||. +++|+|+||+++++        ++++.+......+ ++|++.|.++..+++.  ..++++.++.++++++.+.
T Consensus       223 ~s~sK~-~~~G~r~G~~~~~~--------~~~~~~~~~~~~~-~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~  290 (367)
T 3euc_A          223 RTVSKL-GLAGIRLGYVAGDP--------QWLEQLDKVRPPY-NVNVLTEATALFALEH--VAVLDEQAAQLRAERSRVA  290 (367)
T ss_dssp             EECCCT-TSCSCCEEEEEECH--------HHHHHHGGGCCSS-CCCHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHH
T ss_pred             ecchhh-cccccCceeeeeCH--------HHHHHHHHhCCCC-CCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHH
Confidence            999999 99999999999987        8888887765443 7899999999999985  6788999999999999999


Q ss_pred             HHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHH
Q 042445          155 DRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGL  232 (246)
Q Consensus       155 ~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~  232 (246)
                      +.|+++|++..  .|.+|+|+|++++ .       ..++ .+.|.++||.+.||..|+.  ++++|++++ +++++++++
T Consensus       291 ~~l~~~~g~~~--~~~~~~~~~~~~~-~-------~~~l-~~~l~~~gi~v~~~~~~~~~~~~~iRis~~-~~~~i~~~~  358 (367)
T 3euc_A          291 EGMAAHGGVTV--FPSAANFLLARVP-D-------AAQT-FDRLLARKVLIKNVSKMHPLLANCLRVTVS-TPEENAQFL  358 (367)
T ss_dssp             HHHHTSTTCEE--CCCSSSEEEEECS-C-------HHHH-HHHHHTTTEECEECGGGCGGGTTEEEEECC-CHHHHHHHH
T ss_pred             HHHHhCCCcEE--CCCCCeEEEEECC-C-------HHHH-HHHHHHCCeEEEECCccCCCCCCEEEEecC-CHHHHHHHH
Confidence            99999888863  5677889998876 1       4444 4557889999999998764  799999998 888899999


Q ss_pred             HHHHHHHH
Q 042445          233 GRMKAFYD  240 (246)
Q Consensus       233 ~~l~~~~~  240 (246)
                      +.|.++++
T Consensus       359 ~~l~~~l~  366 (367)
T 3euc_A          359 EAFAASLQ  366 (367)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHhc
Confidence            99988753

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=99.97  E-value=9.2e-32  Score=229.23  Aligned_cols=202  Identities=14%  Similarity=0.125  Sum_probs=161.8

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCC--CCcccccc-CCcccEEEEcccccccccCCceE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNT--PFVSMGVF-GSIVPLLTLGSISKRGIVPGLRL   88 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~--~~~~~~~~-~~~~~~i~~~s~sK~~~~~g~r~   88 (246)
                      ++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++.  ...++..+ +..+++++++||||.|+++|+|+
T Consensus       188 ~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~ri  267 (409)
T 4eu1_A          188 VHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFGLYGHRC  267 (409)
T ss_dssp             EESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSSCGGGCC
T ss_pred             EECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecCcccccCccCCc
Confidence            5689999999999999999999999999999999999999998752  12233222 44568899999999999999999


Q ss_pred             EEE--EeeCCCCCcchhh----HHHHHHHHh-hhcCCCCchHHHHHHHHHhhch-----HHHHHHHHHHHHHHHHHHHHH
Q 042445           89 GWL--VTSDPNGILQDSG----IVDSIKIFL-NISSDPATFIQGAVPQILEKTE-----EEFFSKIIDILRETADKCCDR  156 (246)
Q Consensus        89 G~i--~~~~~~~~~~~~~----~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~  156 (246)
                      ||+  ++++.       +    +++.+.... ..+.+++++.|.++..++.+..     ..++++.++.++++++.+.+.
T Consensus       268 G~~~~v~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  340 (409)
T 4eu1_A          268 GALHISTASA-------EEAKRLVSQLALLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSE  340 (409)
T ss_dssp             EEEEEECSSH-------HHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEeCCH-------HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            997  55552       5    666666543 3455788999999999998643     456888999999999999999


Q ss_pred             hhcCC--C-CccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec-ChHHHHHHH
Q 042445          157 LKEIP--C-ITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV-EPSALENGL  232 (246)
Q Consensus       157 L~~~~--~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~-~~~~l~~~~  232 (246)
                      |++++  + +. +..|++|+|+|+.+          +.+++..+++++||.+.||.        |++++. +++++++++
T Consensus       341 L~~~g~~~~~~-~~~~~~~~~~~~~~----------~~~~~~~ll~~~gv~v~p~~--------Ri~~~~~~~~~i~~~~  401 (409)
T 4eu1_A          341 LKACGSVHDWS-HIERQVGMMAYTGL----------TREQVELLRSEYHIYMTLNG--------RAAVSGLNSTNVEYVS  401 (409)
T ss_dssp             HHHTTCCSCCH-HHHHSCSSEEECCC----------CHHHHHHHHHHHCEECCTTC--------EEEGGGCCTTTHHHHH
T ss_pred             HHhcCCCCCcc-eecCCceEEEEeCC----------CHHHHHHHHHcCCEEEcCCC--------EEEEEecCHhhHHHHH
Confidence            98863  2 44 45788999999544          23557778888999999864        999985 777799999


Q ss_pred             HHHHHHH
Q 042445          233 GRMKAFY  239 (246)
Q Consensus       233 ~~l~~~~  239 (246)
                      ++|.+++
T Consensus       402 ~~l~~~l  408 (409)
T 4eu1_A          402 QAIHNVT  408 (409)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998765

>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}

Probab=99.97  E-value=2.1e-31  Score=226.95  Aligned_cols=209  Identities=14%  Similarity=0.001  Sum_probs=159.9

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCcc--c-cccCCcccEEEEcccccccccCCceE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVS--M-GVFGSIVPLLTLGSISKRGIVPGLRL   88 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~--~-~~~~~~~~~i~~~s~sK~~~~~g~r~   88 (246)
                      +.++||||||.+++.+++++|+++|+++++++|+||+|.+|.+++....+  + ...+..++++++.||||.|+++|+|+
T Consensus       195 l~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~Rv  274 (420)
T 4h51_A          195 LHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLYSERA  274 (420)
T ss_dssp             EESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCE
T ss_pred             EeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccccccCce
Confidence            77899999999999999999999999999999999999999987532212  1 11234457999999999999999999


Q ss_pred             EEEEeeCCCCCcchhhHHHH----HHHH-hhhcCCCCchHHHHHHHHHhhch-----HHHHHHHHHHHHHHHHHHHHHhh
Q 042445           89 GWLVTSDPNGILQDSGIVDS----IKIF-LNISSDPATFIQGAVPQILEKTE-----EEFFSKIIDILRETADKCCDRLK  158 (246)
Q Consensus        89 G~i~~~~~~~~~~~~~~~~~----l~~~-~~~~~~~~~~~q~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~L~  158 (246)
                      ||++++..  ..   +...+    +... ...+++++..+|.++..++.+..     ..+++..+++++++|+.+.+.|+
T Consensus       275 G~~~~~~~--~~---~~~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~  349 (420)
T 4h51_A          275 GTLSLLLK--DK---TKRADVKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDELL  349 (420)
T ss_dssp             EEEEEECS--CH---HHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeccc--CH---HHHHHHHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99998872  10   11222    2222 23455788899999999998653     45678889999999999999998


Q ss_pred             cCC--CCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec-ChHHHHHHHHHH
Q 042445          159 EIP--CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV-EPSALENGLGRM  235 (246)
Q Consensus       159 ~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~-~~~~l~~~~~~l  235 (246)
                      +++  +.+.+..+++|||.|+.+          +.+++ ++|+++||++.|+.        |||++. ++++++.++++|
T Consensus       350 ~~g~~~~~~~i~~q~GmF~~~gl----------s~e~v-~~L~e~~Vy~~~~g--------Ris~Agl~~~ni~~~a~aI  410 (420)
T 4h51_A          350 RLQTPGSWEHVINQIGMFSFLGL----------SKAQC-EYCQNHNIFITVSG--------RANMAGLTHETALMLAQTI  410 (420)
T ss_dssp             HTTCSSCCTHHHHCCSSEEECCC----------CHHHH-HHHHHTTEECCTTC--------EEEGGGCCHHHHHHHHHHH
T ss_pred             HhCCCCCCCeecCCCceEEecCc----------CHHHH-HHHHhCCEEEcCCC--------EEEeccCCHHHHHHHHHHH
Confidence            852  222245678899999644          23444 46789999999865        999985 999999999999


Q ss_pred             HHHHHHHhh
Q 042445          236 KAFYDRHAE  244 (246)
Q Consensus       236 ~~~~~~~~~  244 (246)
                      .+++++..+
T Consensus       411 ~~vvr~i~r  419 (420)
T 4h51_A          411 NDAVRNVNR  419 (420)
T ss_dssp             HHHHC----
T ss_pred             HHHHHHhhc
Confidence            999987665

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=99.97  E-value=2.9e-31  Score=227.00  Aligned_cols=212  Identities=16%  Similarity=0.156  Sum_probs=167.6

Q ss_pred             hhhhhhhc---cc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCC-CCcccccc-CCcccEE
Q 042445            2 ELINQDIT---RE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNT-PFVSMGVF-GSIVPLL   72 (246)
Q Consensus         2 e~~~~~~~---~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~-~~~~~~i   72 (246)
                      |.+++.++   ++    ++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ...++..+ +..++++
T Consensus       183 ~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i  262 (420)
T 4f4e_A          183 DGMLAALNGYEPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVF  262 (420)
T ss_dssp             HHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEE
T ss_pred             HHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEE
Confidence            34555554   32    7889999999999999999999999999999999999999998742 23343333 3456899


Q ss_pred             EEcccccccccCCceEEEEEe--eCCCCCcchhhHHHH----HHHHh-hhcCCCCchHHHHHHHHHhhch-----HHHHH
Q 042445           73 TLGSISKRGIVPGLRLGWLVT--SDPNGILQDSGIVDS----IKIFL-NISSDPATFIQGAVPQILEKTE-----EEFFS  140 (246)
Q Consensus        73 ~~~s~sK~~~~~g~r~G~i~~--~~~~~~~~~~~~~~~----l~~~~-~~~~~~~~~~q~~~~~~l~~~~-----~~~~~  140 (246)
                      +++||||.|+++|+|+||+++  ++.       ++++.    ++... ..+++++.+.|.++..++....     +.+++
T Consensus       263 ~~~S~SK~~~~~G~RiG~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~  335 (420)
T 4f4e_A          263 VSSSFSKSFSLYGERVGALSIITDSK-------DEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELG  335 (420)
T ss_dssp             EEEECTTTTTCGGGCEEEEEEECSSH-------HHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             EEEeCCccCcCcCCCcEEEEEEcCCH-------HHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            999999999999999999875  221       44443    33322 2344678999999999888643     56789


Q ss_pred             HHHHHHHHHHHHHHHHhhcC---CCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeE
Q 042445          141 KIIDILRETADKCCDRLKEI---PCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWL  217 (246)
Q Consensus       141 ~~~~~~~~~~~~l~~~L~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~i  217 (246)
                      +.++.++++++.+.+.|+++   +++. +..|++|+|+|+.++          .+.+..++.++||.+.|+.        
T Consensus       336 ~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~~~g~~~~~~~~----------~~~~~~~l~~~gI~v~~~~--------  396 (420)
T 4f4e_A          336 EMRDRIRAMRNGLVERLKAAGIERDFS-FINAQRGMFSYSGLT----------SAQVDRLREEFGIYAVSTG--------  396 (420)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCSSCCT-HHHHSCSSEEECCCC----------HHHHHHHHHHHCEECCTTS--------
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCce-eECCCccEEEEeCCC----------HHHHHHHHHhCCEEecCCC--------
Confidence            99999999999999999986   3566 467889999996553          3556778889999999864        


Q ss_pred             EEEeec-ChHHHHHHHHHHHHHH
Q 042445          218 RITFAV-EPSALENGLGRMKAFY  239 (246)
Q Consensus       218 Rls~~~-~~~~l~~~~~~l~~~~  239 (246)
                      |+|++. +++++++++++|.+++
T Consensus       397 Ris~~~~~~~~i~~~~~~l~~~l  419 (420)
T 4f4e_A          397 RICVAALNTRNLDVVANAIAAVL  419 (420)
T ss_dssp             EEEGGGCCTTTHHHHHHHHHHHH
T ss_pred             eEEEecCCHHHHHHHHHHHHHHh
Confidence            999996 8888999999998876

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*

Probab=99.97  E-value=1.5e-31  Score=226.83  Aligned_cols=200  Identities=16%  Similarity=0.136  Sum_probs=156.5

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcC--CEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLG--IMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLG   89 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~--~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G   89 (246)
                      ++++||||||.+++     +|++  ++++  ++||+||+|.+    + .+.++..  ..+++++++||||.|+++|+|+|
T Consensus       162 ~l~~p~NPtG~~~~-----~l~~--~~~~~~~~ii~De~y~~----~-~~~~l~~--~~~~~i~~~S~SK~~g~~GlRiG  227 (391)
T 3bwn_A          162 LVTSPNNPDGTIRE-----TVVN--RPDDDEAKVIHDFAYYW----P-HYTPITR--RQDHDIMLFTFSKITGHAGSRIG  227 (391)
T ss_dssp             EEESSCTTTCCCCC-----CCC-------CCCEEEEECTTCS----T-TTSCCCC--CBCCSEEEEEHHHHHSCGGGCEE
T ss_pred             EECCCCCCCchhHH-----HHHH--HhhcCCCEEEEeCCCCC----C-CCCcccc--CCCCeEEEEechhhcCCCccceE
Confidence            68999999999997     3444  2255  99999999984    1 2223332  34689999999999999999999


Q ss_pred             EEEe-eCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhch---------HHHHHHHHHHHHHHHHHHHHHhh
Q 042445           90 WLVT-SDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTE---------EEFFSKIIDILRETADKCCDRLK  158 (246)
Q Consensus        90 ~i~~-~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~---------~~~~~~~~~~~~~~~~~l~~~L~  158 (246)
                      |+++ ++        ++++.+..... ...+++.+.|.++..+|+.+.         +.++++.++.++++++.+.+.|+
T Consensus       228 ~~~~~~~--------~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~  299 (391)
T 3bwn_A          228 WALVKDK--------EVAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVK  299 (391)
T ss_dssp             EEEECCH--------HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecCH--------HHHHHHHHHhcccccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998 66        88888887754 345889999999999998653         46899999999999999999999


Q ss_pred             cCCCCccccC-------------CCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC-CCeEEEEeecC
Q 042445          159 EIPCITCPKK-------------PEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-KDWLRITFAVE  224 (246)
Q Consensus       159 ~~~~~~~~~~-------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~iRls~~~~  224 (246)
                      +++++. +..             |.+|+|+|++++..         +.+..++.++||.+.||..|+. ++++|+|++.+
T Consensus       300 ~~~~~~-~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~---------~~~~~~l~~~gV~v~pg~~fg~~~~~iRis~~~~  369 (391)
T 3bwn_A          300 ESDAFT-LPKYPEAFCNYFGKSLESYPAFAWLGTKEE---------TDLVSELRRHKVMSRAGERCGSDKKHVRVSMLSR  369 (391)
T ss_dssp             TCSSEE-CCCCCCEEETTTTEEECCCCSEEEEEESSS---------CCHHHHHHHTTEECEEGGGGTCCTTEEEEESCSC
T ss_pred             hCCCcc-cccCCccccccccccCCCcceEEEecCCcH---------HHHHHHHHHCCEEEccCCCCCCCCCEEEEEecCC
Confidence            886655 222             35667999988631         3456678899999999999986 78999999988


Q ss_pred             hHHHHHHHHHHHHHHHHHh
Q 042445          225 PSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       225 ~~~l~~~~~~l~~~~~~~~  243 (246)
                      ++++++++++|.+++++..
T Consensus       370 ~e~i~~~~~~L~~~~~~~~  388 (391)
T 3bwn_A          370 EDVFNVFLERLANMKLIKS  388 (391)
T ss_dssp             HHHHHHHHHHHHSCC----
T ss_pred             HHHHHHHHHHHHHHHHhhc
Confidence            8999999999998876543

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=99.97  E-value=5.9e-31  Score=224.31  Aligned_cols=204  Identities=17%  Similarity=0.140  Sum_probs=165.3

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCC--CCCccccccC-CcccEEEEcccccccccCCceE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGN--TPFVSMGVFG-SIVPLLTLGSISKRGIVPGLRL   88 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~--~~~~~~~~~~-~~~~~i~~~s~sK~~~~~g~r~   88 (246)
                      ++++||||||.++|.+++++|+++|++||+++|+||+|.++.+++  ..+.++..+. ..++++++.|+||.|+++|+|+
T Consensus       188 ~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~ri  267 (412)
T 1ajs_A          188 LHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERV  267 (412)
T ss_dssp             EESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCE
T ss_pred             EECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCCcEEEEEecccccCCCCcce
Confidence            579999999999999999999999999999999999999998764  1222333332 3468999999999999999999


Q ss_pred             EEEEe---eCCCCCcchhh----HHHHHHHHh-hhcCCCCchHHHHHHHHHhhch-----HHHHHHHHHHHHHHHHHHHH
Q 042445           89 GWLVT---SDPNGILQDSG----IVDSIKIFL-NISSDPATFIQGAVPQILEKTE-----EEFFSKIIDILRETADKCCD  155 (246)
Q Consensus        89 G~i~~---~~~~~~~~~~~----~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~l~~  155 (246)
                      ||+++   ++        +    +++.+.... ..+.+++++.|.++..+|+...     +.++++.++.++++++.+.+
T Consensus       268 G~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  339 (412)
T 1ajs_A          268 GNLTVVAKEP--------DSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRA  339 (412)
T ss_dssp             EEEEEECSSH--------HHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEecCCH--------HHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999   55        5    445455432 3343579999999999998653     45889999999999999999


Q ss_pred             HhhcCC---CCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec-ChHHHHHH
Q 042445          156 RLKEIP---CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV-EPSALENG  231 (246)
Q Consensus       156 ~L~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~-~~~~l~~~  231 (246)
                      .|++++   ++. +..|.+|+|+|+.++          .+++..++.++||.+.|+        +|++++. ++++++++
T Consensus       340 ~L~~~~~~~~~~-~~~~~~~~~~~~~~~----------~~~~~~~l~~~gv~v~~~--------~Ris~~~~~~~~i~~~  400 (412)
T 1ajs_A          340 RLEALKTPGTWN-HITDQIGMFSFTGLN----------PKQVEYLINQKHIYLLPS--------GRINMCGLTTKNLDYV  400 (412)
T ss_dssp             HHHHTTCSSCCH-HHHHCCSSEEECCCC----------HHHHHHHHHTTCEECCTT--------SEEEGGGCCTTTHHHH
T ss_pred             HHHhhCCCCCee-EEcCCCceEEEeCCC----------HHHHHHHHHhCCEEecCC--------cEEEeeeCCHHHHHHH
Confidence            999874   355 457889999996542          456777888999999885        4999995 89999999


Q ss_pred             HHHHHHHHHHH
Q 042445          232 LGRMKAFYDRH  242 (246)
Q Consensus       232 ~~~l~~~~~~~  242 (246)
                      +++|.+++++.
T Consensus       401 ~~~l~~~l~~~  411 (412)
T 1ajs_A          401 ATSIHEAVTKI  411 (412)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhc
Confidence            99999998753

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=99.97  E-value=6.9e-31  Score=222.70  Aligned_cols=203  Identities=14%  Similarity=0.093  Sum_probs=161.8

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCC-CCCcccccc-CCcccEEEEcccccccccCCceEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGN-TPFVSMGVF-GSIVPLLTLGSISKRGIVPGLRLG   89 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~-~~~~~~~~~-~~~~~~i~~~s~sK~~~~~g~r~G   89 (246)
                      ++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++ ....++..+ +..+++++++|+||.|+++|+|+|
T Consensus       178 ~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~riG  257 (397)
T 3fsl_A          178 LHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVG  257 (397)
T ss_dssp             ECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGGCCE
T ss_pred             EeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccccccCcCCCee
Confidence            788999999999999999999999999999999999999999873 223343333 345789999999999999999999


Q ss_pred             EEEeeCCCCCcchhhHHHHHHHH-----hhhcCCCCchHHHHHHHHHhhch-----HHHHHHHHHHHHHHHHHHHHHhhc
Q 042445           90 WLVTSDPNGILQDSGIVDSIKIF-----LNISSDPATFIQGAVPQILEKTE-----EEFFSKIIDILRETADKCCDRLKE  159 (246)
Q Consensus        90 ~i~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~q~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~  159 (246)
                      |++++...     +++++.+...     ...+.+++.+.|.++..++....     ..++++.++.++++++.+.+.|++
T Consensus       258 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~  332 (397)
T 3fsl_A          258 GLSVMCED-----AEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLST  332 (397)
T ss_dssp             EEEEECSS-----HHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEecCC-----HHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99863210     0445444322     12344678899999999888643     567889999999999999999998


Q ss_pred             CC---CCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec-ChHHHHHHHHHH
Q 042445          160 IP---CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV-EPSALENGLGRM  235 (246)
Q Consensus       160 ~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~-~~~~l~~~~~~l  235 (246)
                      ++   ++. +..|++|+|+|+.++          .+.+..+++++||.+.||.        |++++. +++++++++++|
T Consensus       333 ~~~~~~~~-~~~~~~~~~~~~~~~----------~~~~~~~l~~~gi~v~~g~--------Ris~~~~~~~~i~~~~~~l  393 (397)
T 3fsl_A          333 EMPERNFD-YLLNQRGMFSYTGLS----------AAQVDRLREEFGVYLIASG--------RMCVAGLNTANVQRVAKAF  393 (397)
T ss_dssp             HCTTSCCT-HHHHCCSSEEECCCC----------HHHHHHHHHTTCEECCTTC--------EEEGGGCCTTTHHHHHHHH
T ss_pred             cCCCCCce-eecCCceEEEecCCC----------HHHHHHHHHhCCEEECCCC--------eEEEEecCHhhHHHHHHHH
Confidence            64   566 467789999997653          3456778889999999975        999997 888899999999


Q ss_pred             HHH
Q 042445          236 KAF  238 (246)
Q Consensus       236 ~~~  238 (246)
                      .++
T Consensus       394 ~~~  396 (397)
T 3fsl_A          394 AAV  396 (397)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            875

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=99.97  E-value=1.2e-30  Score=221.62  Aligned_cols=204  Identities=17%  Similarity=0.115  Sum_probs=159.3

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCC--CCcccccc-CCcccEEEEcccccccccCCceE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNT--PFVSMGVF-GSIVPLLTLGSISKRGIVPGLRL   88 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~--~~~~~~~~-~~~~~~i~~~s~sK~~~~~g~r~   88 (246)
                      ++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++.  ...++..+ ...+++++++||||.|+++|+|+
T Consensus       180 ~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~Ri  259 (401)
T 7aat_A          180 LHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGERA  259 (401)
T ss_dssp             EESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCE
T ss_pred             EeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCCcccccccCce
Confidence            8899999999999999999999999999999999999999988753  12233222 34568999999999999999999


Q ss_pred             EEEEeeCCCCCcchhh----HHHHHHHHh-hhcCCCCchHHHHHHHHHhhch-----HHHHHHHHHHHHHHHHHHHHHhh
Q 042445           89 GWLVTSDPNGILQDSG----IVDSIKIFL-NISSDPATFIQGAVPQILEKTE-----EEFFSKIIDILRETADKCCDRLK  158 (246)
Q Consensus        89 G~i~~~~~~~~~~~~~----~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~L~  158 (246)
                      ||++++...     ++    +...+.... ..+.+++.+.|.++..++.++.     ..++++.++.++++++.+.+.|+
T Consensus       260 G~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~  334 (401)
T 7aat_A          260 GAFTVICRD-----AEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLK  334 (401)
T ss_dssp             EEEEEECSS-----HHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEeCC-----HHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999873210     03    445554442 2344677788888888887542     46688889999999999999998


Q ss_pred             cCC---CCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec-ChHHHHHHHHH
Q 042445          159 EIP---CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV-EPSALENGLGR  234 (246)
Q Consensus       159 ~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~-~~~~l~~~~~~  234 (246)
                      +++   ++. +..|++|+|+|+.++          .+++..+++++||.+.|+        +|+|++. ++++++++++.
T Consensus       335 ~~~~~~~~~-~~~~~~~~~~~~~~~----------~~~~~~ll~~~gi~v~~~--------~Ris~~~~~~~~i~~~~~~  395 (401)
T 7aat_A          335 KEGSSHNWQ-HITDQIGMFCFTGLK----------PEQVERLTKEFSIYMTKD--------GRISVAGVASSNVGYLAHA  395 (401)
T ss_dssp             HTTCCSCCH-HHHHCCSSEEECCCC----------HHHHHHHHHHHCEECCTT--------CEEEGGGCCTTTHHHHHHH
T ss_pred             hcCCCCCCc-eecCCcceEEecCCC----------HHHHHHHHHhCCEeccCC--------CeEEeccCChhhHHHHHHH
Confidence            862   354 457899999996542          455677888999999875        4999985 66669999999


Q ss_pred             HHHHH
Q 042445          235 MKAFY  239 (246)
Q Consensus       235 l~~~~  239 (246)
                      |.+++
T Consensus       396 l~~~~  400 (401)
T 7aat_A          396 IHQVT  400 (401)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98875

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=99.97  E-value=1.3e-30  Score=224.73  Aligned_cols=210  Identities=16%  Similarity=0.116  Sum_probs=164.9

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCC--CCcccccc-CCcccEEEEcccccccccCCceE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNT--PFVSMGVF-GSIVPLLTLGSISKRGIVPGLRL   88 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~--~~~~~~~~-~~~~~~i~~~s~sK~~~~~g~r~   88 (246)
                      ++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++.  ...++..+ ...++++++.||||.|+++|+|+
T Consensus       207 ~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~Ri  286 (448)
T 3meb_A          207 FHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVLVAQSFSKNFGLYGERI  286 (448)
T ss_dssp             EESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCC
T ss_pred             EeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhhcCCcEEEEecccccCCCccccc
Confidence            7789999999999999999999999999999999999999988751  12233322 33468899999999999999999


Q ss_pred             EEE--Ee--------eCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhch-----HHHHHHHHHHHHHHHHH
Q 042445           89 GWL--VT--------SDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTE-----EEFFSKIIDILRETADK  152 (246)
Q Consensus        89 G~i--~~--------~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~  152 (246)
                      ||+  ++        ++. ....  ++++.+... ...+++++.+.|.++..+|.+..     ..++++.++.++++++.
T Consensus       287 G~l~~v~~~~~~~~~~~~-~~~~--~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~  363 (448)
T 3meb_A          287 GCLHVVHAGVEGSVEKNK-ALSA--AMVSGMTLQIRKTWSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSL  363 (448)
T ss_dssp             EEEEEECCCCSSSHHHHH-HHHH--HHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeeeeeeccccccccCCH-HHHH--HHHHHHHHHHhcccCCccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998  66        431 0000  244444443 33455788899999999998643     25588899999999999


Q ss_pred             HHHHhhcC--CC------CccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec-
Q 042445          153 CCDRLKEI--PC------ITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV-  223 (246)
Q Consensus       153 l~~~L~~~--~~------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~-  223 (246)
                      +.+.|+++  ++      +. +..|++|+|+|+.+          +.+++..+++++||.+.||+.       |+|++. 
T Consensus       364 l~~~L~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~----------~~~~~~~ll~~~gV~v~~G~g-------Ris~a~~  425 (448)
T 3meb_A          364 LHASLAKRKTPGPGSKGTWD-HILTAIGMFTFTGL----------TPEHVDYLKEKWSIYLVKAGG-------RMSMCGL  425 (448)
T ss_dssp             HHHHHHHTTCCCSTTTCCCT-HHHHCCSSEEECCC----------CHHHHHHHHHHHCEEECSGGG-------EEEGGGC
T ss_pred             HHHHHHhhCCCCcCcccccc-eeCCCceEEEecCC----------CHHHHHHHHHhCCEEEeCCCc-------EEEEecC
Confidence            99999886  45      44 45788999999655          346677788899999999762       999997 


Q ss_pred             ChHHHHHHHHHHHHHHHHH
Q 042445          224 EPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       224 ~~~~l~~~~~~l~~~~~~~  242 (246)
                      +++++++++++|.+++++.
T Consensus       426 ~~~~i~~~~~~l~~~l~~~  444 (448)
T 3meb_A          426 TESNCDYVAEAIHDAVTKL  444 (448)
T ss_dssp             CTTTHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHHHHHhc
Confidence            8888999999999998753

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=99.97  E-value=3.4e-30  Score=215.13  Aligned_cols=206  Identities=14%  Similarity=0.186  Sum_probs=162.2

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      ++++||||||.+++.+++.+|++.|.++  ++|+||+|.++.+++...  ...++..++++++.||||.++++|+|+||+
T Consensus       134 ~i~~p~nptG~~~~~~~l~~l~~~~~~~--~li~Dea~~~~~~~~~~~--~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~  209 (350)
T 3fkd_A          134 WLCNPNNPDGRLLQRTEILRLLNDHPDT--TFVLDQSYVSFTTEEVIR--PADIKGRKNLVMVYSFSHAYGIPGLRIGYI  209 (350)
T ss_dssp             EEESSCTTTCCCCCHHHHHHHHHHCTTS--EEEEECTTTTSCSSCCCC--GGGGTTCSSEEEEEESHHHHSCGGGCCEEE
T ss_pred             EEeCCCCCcCCCCCHHHHHHHHHhCCCC--EEEEECchhhhccCcchh--hHHhhcCCCEEEEecCchhccCcchheEeE
Confidence            7789999999999999999988888765  999999999988775322  234455678999999999999999999999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG  171 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~  171 (246)
                      ++++        ++++.+......+ ++|++.|.++..+|+.. +.+.++.++.. ++++.+.+.|++++++..  .|.+
T Consensus       210 ~~~~--------~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~-~~~~~~~~~~~-~~~~~l~~~L~~~~~~~~--~~~~  276 (350)
T 3fkd_A          210 VANK--------DFMKRVAAFSTPW-AVNALAIEAAKFILIHP-AQFTLPIRKWQ-RNTVDFITALNRLDGVEV--HPSG  276 (350)
T ss_dssp             ECCH--------HHHHHHHTTCCTT-CSCHHHHHHHHHHHHCT-TTTCCCHHHHH-HHHHHHHHHHHHSTTEEE--CCCS
T ss_pred             EeCH--------HHHHHHHHhCCCC-CCCHHHHHHHHHHHhCH-HHHHHHHHHHH-HHHHHHHHHHhcCCCcEE--CCCC
Confidence            9977        8999888775544 78999999999999853 23444555544 888999999988888874  5667


Q ss_pred             ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHHHHHHHH
Q 042445          172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKAFYDR  241 (246)
Q Consensus       172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l~~~~~~  241 (246)
                      ++|+|++++..      +..++...+++++||.+.||..|+.  ++++|+|++ ++++++++++.|++.+++
T Consensus       277 ~~~~~~~~~~~------~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~-~~~~~~~l~~al~~~~~~  341 (350)
T 3fkd_A          277 TTFFLLRLKKG------TAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ-RPAQNQLFIKALETFLEK  341 (350)
T ss_dssp             SSEEEEEESSS------CHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHHHHTC
T ss_pred             CcEEEEECCCC------CHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC-CHHHHHHHHHHHHHHHHH
Confidence            78888888753      2556655555449999999999876  789999998 555566667777666554

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=99.97  E-value=1.7e-30  Score=221.53  Aligned_cols=203  Identities=13%  Similarity=0.147  Sum_probs=163.4

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCC--CCCccccccC-Ccc---cEEEEcccccccccCC
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGN--TPFVSMGVFG-SIV---PLLTLGSISKRGIVPG   85 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~--~~~~~~~~~~-~~~---~~i~~~s~sK~~~~~g   85 (246)
                      ++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++  ..+.++..+. ..+   ++++++|+||.|+++|
T Consensus       181 ~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G  260 (412)
T 1yaa_A          181 LHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYG  260 (412)
T ss_dssp             EECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGG
T ss_pred             EeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEEeccCCCCCCcC
Confidence            449999999999999999999999999999999999999998764  1222332222 223   7899999999999889


Q ss_pred             ceEEEEE--e-----eCCCCCcchhh----HHHHHHHH-hhhcCCCCchHHHHHHHHHhhch-----HHHHHHHHHHHHH
Q 042445           86 LRLGWLV--T-----SDPNGILQDSG----IVDSIKIF-LNISSDPATFIQGAVPQILEKTE-----EEFFSKIIDILRE  148 (246)
Q Consensus        86 ~r~G~i~--~-----~~~~~~~~~~~----~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~-----~~~~~~~~~~~~~  148 (246)
                      +|+||++  +     ++        +    +++.+... ...+.+++++.|.++.++|+...     +.++++.++.+++
T Consensus       261 lriG~~~~~~~~~~~~~--------~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~  332 (412)
T 1yaa_A          261 ERVGCFHLALTKQAQNK--------TIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITK  332 (412)
T ss_dssp             GCEEEEEEECCSCTTHH--------HHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcceEEEEEecCCCCCH--------HHHHHHHHHHHHHHhhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999998  7     44        5    77777764 33444668999999999998652     4689999999999


Q ss_pred             HHHHHHHHhhcCC---CCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec-C
Q 042445          149 TADKCCDRLKEIP---CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV-E  224 (246)
Q Consensus       149 ~~~~l~~~L~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~-~  224 (246)
                      +++.+.+.|++++   ++. +..|.+|+|+|+.++         . +.+..++.++||.+.|        ++|++++. +
T Consensus       333 ~~~~l~~~L~~~~~~~~~~-~~~~~~~~~~~~~~~---------~-~~~~~~l~~~gi~v~~--------~~Ris~~~~~  393 (412)
T 1yaa_A          333 MRHALRDHLVKLGTPGNWD-HIVNQCGMFSFTGLT---------P-QMVKRLEETHAVYLVA--------SGRASIAGLN  393 (412)
T ss_dssp             HHHHHHHHHHHHTCSSCCT-HHHHCCSSEEECCCC---------H-HHHHHHHHHHCEECCT--------TSEEEGGGCC
T ss_pred             HHHHHHHHHHhhCCCCCee-eeccCceEEEeeCCC---------H-HHHHHHHHhCCEEecc--------CcEEEEccCC
Confidence            9999999998864   366 457889999996442         3 3457778889999987        46999996 8


Q ss_pred             hHHHHHHHHHHHHHHHH
Q 042445          225 PSALENGLGRMKAFYDR  241 (246)
Q Consensus       225 ~~~l~~~~~~l~~~~~~  241 (246)
                      ++++++++++|.++++.
T Consensus       394 ~~~i~~~~~~l~~~~~~  410 (412)
T 1yaa_A          394 QGNVEYVAKAIDEVVRF  410 (412)
T ss_dssp             TTTHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHh
Confidence            89999999999998864

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=99.97  E-value=3.6e-29  Score=209.73  Aligned_cols=201  Identities=17%  Similarity=0.215  Sum_probs=161.5

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      ++++||||||.+++.+   ++.++|+++|+++|+||+|.++.  +...  ....+..++++++.|+||.|+++|+|+||+
T Consensus       154 ~i~~p~nptG~~~~~~---~l~~l~~~~~~~li~De~~~~~~--~~~~--~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~  226 (360)
T 3hdo_A          154 FLTTPNAPLGPSFPLE---YIDELARRCAGMLVLDETYAEFA--ESNA--LELVRRHENVVVTRTLSKSYSLAGMRIGLA  226 (360)
T ss_dssp             EEESSCTTTCCCCCHH---HHHHHHHHBSSEEEEECTTGGGS--SCCC--THHHHHCSSEEEEEESTTTTSCTTSCCEEE
T ss_pred             EEeCCCCCCCCCcCHH---HHHHHHHHCCCEEEEECChHhhC--Ccch--hHHhccCCCEEEEecchHhhcCCccceeeE
Confidence            8889999999999965   45666788999999999999864  2222  222334568899999999999999999999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG  171 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~  171 (246)
                      ++++        ++++.+......+ ++|++.|.++..+|+.  ..++++.++.++++++.+.+.|+++ ++..  .+.+
T Consensus       227 ~~~~--------~~~~~~~~~~~~~-~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~--~~~~  292 (360)
T 3hdo_A          227 IARP--------EVIAALDKIRDHY-NLDRLAQAACVAALRD--QAYLSECCRRIRETREWFTTELRSI-GYDV--IPSQ  292 (360)
T ss_dssp             ECCH--------HHHHHHHHHSCSC-CSCHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHT-TCEE--CCCS
T ss_pred             eeCH--------HHHHHHHHhCCCC-CCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHC-CCEE--cCCC
Confidence            9987        9999888775543 7899999999999984  6688999999999999999999988 6763  4566


Q ss_pred             ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHHHHH
Q 042445          172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDR  241 (246)
Q Consensus       172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~~~  241 (246)
                      |.|+|++++..       +.+.+.+.|.++||.+.|+..+..++++|++++ ++++++++++.|+++.+.
T Consensus       293 ~~~~~~~~~~~-------~~~~l~~~l~~~gi~v~~~~~~~~~~~iRis~~-~~~e~~~l~~al~~~~~~  354 (360)
T 3hdo_A          293 GNYLFATPPDR-------DGKRVYDGLYARKVLVRHFSDPLLAHGMRISIG-TREEMEQTLAALKEIGEG  354 (360)
T ss_dssp             SSEEEEECTTC-------CHHHHHHHHHHTTEECBCCCSTTTTTSEEEECC-CHHHHHHHHHHHHHHHC-
T ss_pred             ccEEEEECCCC-------CHHHHHHHHHHCCEEEEECCCCCCCCEEEEEcC-CHHHHHHHHHHHHHHhcc
Confidence            78888776532       344445667789999999877555899999998 777888888888877654

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=99.96  E-value=5.3e-30  Score=217.15  Aligned_cols=205  Identities=17%  Similarity=0.145  Sum_probs=159.0

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCC-CCCccccccCC-cccEEEEcccccccccCCceEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGN-TPFVSMGVFGS-IVPLLTLGSISKRGIVPGLRLG   89 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~-~~~~i~~~s~sK~~~~~g~r~G   89 (246)
                      ++++||||||.++|.+++++|+++|++||+++|+||+|.++.+++ ..+.++..+.. .+++++++|+||.|+++|+|+|
T Consensus       177 ~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG  256 (396)
T 2q7w_A          177 FHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNFGLYNERVG  256 (396)
T ss_dssp             EECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGGCCE
T ss_pred             EeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEeccccccccccccc
Confidence            679999999999999999999999999999999999999998763 12223333332 3589999999999999999999


Q ss_pred             EEEe--eCCCCCcchhhHHHHHHHHh-hhcCCCCchHHHHHHHHHhhch-----HHHHHHHHHHHHHHHHHHHHHhhcCC
Q 042445           90 WLVT--SDPNGILQDSGIVDSIKIFL-NISSDPATFIQGAVPQILEKTE-----EEFFSKIIDILRETADKCCDRLKEIP  161 (246)
Q Consensus        90 ~i~~--~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~~  161 (246)
                      |+++  ++. ....  ++++.+.... ..+.++|++.|.++.++|+...     +.++++.++.++++++.+.+.|++++
T Consensus       257 ~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  333 (396)
T 2q7w_A          257 ACTLVAADS-ETVD--RAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG  333 (396)
T ss_dssp             EEEEECSSH-HHHH--HHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTT
T ss_pred             eEEEEcCCH-HHHH--HHHHHHHHHHhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9997  331 0000  2444444432 3343569999999999998641     46788899999999999999999874


Q ss_pred             ---CCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec-ChHHHHHHHHHHHH
Q 042445          162 ---CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV-EPSALENGLGRMKA  237 (246)
Q Consensus       162 ---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~-~~~~l~~~~~~l~~  237 (246)
                         ++. +..|.+|+|+|+.++          .+.+..++.++||.+.||        +|++++. +++++++++++|.+
T Consensus       334 ~~~~~~-~~~~~~~~~~~~~~~----------~~~~~~~l~~~gv~v~~~--------~Ris~~~~~~e~i~~~~~~l~~  394 (396)
T 2q7w_A          334 ANRDFS-FIIKQNGMFSFSGLT----------KEQVLRLREEFGVYAVAS--------GRVNVAGMTPDNMAPLCEAIVA  394 (396)
T ss_dssp             CCSCCT-HHHHCCSSEEECCCC----------HHHHHHHHHHHCEECCTT--------CEEEGGGCCTTTHHHHHHHHHH
T ss_pred             CCCCcc-eecCCCceEEEecCC----------HHHHHHHHHhcCeeecCC--------ceEEEeecCHHHHHHHHHHHHh
Confidence               365 457889999996543          245677888999999885        4999996 88999999999987


Q ss_pred             H
Q 042445          238 F  238 (246)
Q Consensus       238 ~  238 (246)
                      +
T Consensus       395 ~  395 (396)
T 2q7w_A          395 V  395 (396)
T ss_dssp             H
T ss_pred             c
Confidence            5

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*

Probab=99.96  E-value=1.7e-29  Score=216.50  Aligned_cols=209  Identities=13%  Similarity=0.126  Sum_probs=162.4

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.++++    ++++||||||.+++ +.+       +  ++..+.|+.|.    +  ++.++..+. .+++++++||
T Consensus       187 ~~l~~~~~~~~k~v~l~~p~NPtG~~~~-~~l-------~--~~~~i~d~~~~----~--~~~s~~~~~-~~~~i~~~S~  249 (427)
T 2hox_A          187 ANYVNVSNPEQYIEMVTSPNNPEGLLRH-AVI-------K--GCKSIYDMVYY----W--PHYTPIKYK-ADEDILLFTM  249 (427)
T ss_dssp             GGGTTCSCGGGEEEEEESSCTTTCCCCC-CSS-------T--TCEEEEECTTC----S--TTTSCCCSC-BCCSEEEEEH
T ss_pred             HHHHHhhcCCceEEEEcCCCCCcccccH-HHH-------c--CCCEEEeeccc----C--CCCCccccC-CCceEEEEeC
Confidence            4455555433    88899999999999 532       2  55566676664    2  222333333 5689999999


Q ss_pred             ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhch----------HHHHHHHHHHH
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTE----------EEFFSKIIDIL  146 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~----------~~~~~~~~~~~  146 (246)
                      ||.|+++|+|+||+++++.       ++++.+...... ..+++.+.|.++..+|.+..          +.++++.++.+
T Consensus       250 SK~~g~~G~RiG~~~~~~~-------~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~  322 (427)
T 2hox_A          250 SKFTGHSGSRFGWALIKDE-------SVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKL  322 (427)
T ss_dssp             HHHTSCGGGCCEEEEECCH-------HHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHH
T ss_pred             hhcCCCCCceEEEEEECCH-------HHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHH
Confidence            9999999999999999532       888988887553 34889999999999998642          35778889999


Q ss_pred             HHHHHHHHHHhhcCCCCcc-------------ccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC
Q 042445          147 RETADKCCDRLKEIPCITC-------------PKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL  213 (246)
Q Consensus       147 ~~~~~~l~~~L~~~~~~~~-------------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~  213 (246)
                      +++++.+.+.|++++++..             +..|++|+|+|++++..       +.+++..+++++||.++||..|+.
T Consensus       323 ~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~~-------~~~~~~~ll~~~gI~v~pg~~f~~  395 (427)
T 2hox_A          323 RERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWE-------EDKDCYQTFQNGRINTQNGVGFEA  395 (427)
T ss_dssp             HHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSG-------GGCSHHHHHHHTTEECEEGGGGTS
T ss_pred             HHHHHHHHHHHHhCcCccccccccccccccccccCCCCceEEEEECCCc-------HHHHHHHHHHHCCEEEcCCCccCC
Confidence            9999999999998766542             23567899999998642       445667777789999999999986


Q ss_pred             -CCeEEEEeecChHHHHHHHHHHHHHHHH
Q 042445          214 -KDWLRITFAVEPSALENGLGRMKAFYDR  241 (246)
Q Consensus       214 -~~~iRls~~~~~~~l~~~~~~l~~~~~~  241 (246)
                       ++++|+|++.+++++++++++|.+++++
T Consensus       396 ~~~~~Ris~~~~~e~l~~~l~~l~~~~~~  424 (427)
T 2hox_A          396 SSRYVRLSLIKTQDDFDQLMYYLKDMVKA  424 (427)
T ss_dssp             CTTEEEEECSSCHHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEEecCCHHHHHHHHHHHHHHHhh
Confidence             7899999999899999999999998854

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=99.96  E-value=2.2e-28  Score=202.89  Aligned_cols=195  Identities=17%  Similarity=0.183  Sum_probs=149.6

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      ++++||||||.+++.+++.+   +|++++. +|+||+|.++...+..  .   ....+++++++|+||.|+++|+|+||+
T Consensus       140 ~i~~p~nptG~~~~~~~l~~---l~~~~~~-~ivDea~~~~~~~~~~--~---~~~~~~~i~~~S~sK~~g~~G~r~G~~  210 (337)
T 3p1t_A          140 VLANPSNPTGQALSAGELDQ---LRQRAGK-LLIDETYVDYSSFRAR--G---LAYGENELVFRSFSKSYGLAGLRLGAL  210 (337)
T ss_dssp             EEESSCTTTCCCCCHHHHHH---HHHHCSE-EEEECTTGGGSSCSSS--C---CCCBTTEEEEEESSSTTCCTTTCCEEE
T ss_pred             EEeCCCCCCCCCCCHHHHHH---HHHhCCc-EEEECCChhhcccccc--c---cccCCCEEEEeeCchhccCcchheEEE
Confidence            88999999999999766555   5567786 5669999987654321  1   223457899999999999999999999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG  171 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~  171 (246)
                      ++++        ++++.+......+ +++++.|.++..+++.  ..+..+.++.+.++++.+.+.|+++ ++. +..+ .
T Consensus       211 ~~~~--------~~~~~l~~~~~~~-~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~-~  276 (337)
T 3p1t_A          211 FGPS--------ELIAAMKRKQWFC-NVGTLDLHALEAALDN--DRAREAHIAKTLAQRRRVADALRGL-GYR-VASS-E  276 (337)
T ss_dssp             ECCH--------HHHHHHHTTSCTT-CSCHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHHHHHHHT-TCC-BCCC-S
T ss_pred             EeCH--------HHHHHHHhhcCCC-CCCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHC-cCE-ECCC-C
Confidence            9988        8999887764433 7899999999999984  3345566666778889999999987 666 3444 4


Q ss_pred             ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHHH
Q 042445          172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFY  239 (246)
Q Consensus       172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~  239 (246)
                      +.|+|+..+.        . +.+.++|.++||.+.||..|+.++++|+|++ ++++++++++.|+++.
T Consensus       277 ~~~~~~~~~~--------~-~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~-~~~~~~~l~~al~~~~  334 (337)
T 3p1t_A          277 ANFVLVENAA--------G-ERTLRFLRERGIQVKDAGQFGLHHHIRISIG-REEDNDRLLAALAEYS  334 (337)
T ss_dssp             SSEEEEECTT--------T-HHHHHHHHHTTEECEEGGGGTCCSEEEEECC-CHHHHHHHHHHHHHHT
T ss_pred             CeEEEEEcCC--------H-HHHHHHHHHCCeEEEECccCCCCCeEEEecC-CHHHHHHHHHHHHHHh
Confidence            5566655542        2 3456678899999999999988999999998 6677777777776654

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=99.96  E-value=3.1e-29  Score=212.39  Aligned_cols=201  Identities=15%  Similarity=0.119  Sum_probs=157.1

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCC-CCccccccCC-cccEEEEcccccccccCCceEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNT-PFVSMGVFGS-IVPLLTLGSISKRGIVPGLRLG   89 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~-~~~~i~~~s~sK~~~~~g~r~G   89 (246)
                      ++++||||||.++|.+++++|+++|+++|+++|+||+|.++.+++. ...++..+.. .+++++++|+||.|+++|+|+|
T Consensus       174 ~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG  253 (394)
T 2ay1_A          174 LHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERTG  253 (394)
T ss_dssp             EESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGCEE
T ss_pred             EeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCCcCcCCccc
Confidence            5699999999999999999999999999999999999999887531 1223332322 3578999999999999999999


Q ss_pred             EEEe--eCCCCCcchhhHHHH----HHHH-hhhcCCCCchHHHHHHHHHhhch-----HHHHHHHHHHHHHHHHHHHHHh
Q 042445           90 WLVT--SDPNGILQDSGIVDS----IKIF-LNISSDPATFIQGAVPQILEKTE-----EEFFSKIIDILRETADKCCDRL  157 (246)
Q Consensus        90 ~i~~--~~~~~~~~~~~~~~~----l~~~-~~~~~~~~~~~q~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~L  157 (246)
                      |+++  ++.       ++++.    +... ...+.++|++.|.++.++|+...     +.++++.++.++++++.+.+.|
T Consensus       254 ~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L  326 (394)
T 2ay1_A          254 CLLALCADA-------ATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGEL  326 (394)
T ss_dssp             EEEEECSSH-------HHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEeCCH-------HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998  331       44443    3322 22343569999999999998641     4678899999999999999999


Q ss_pred             hcCC---CCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec-ChHHHHHHHH
Q 042445          158 KEIP---CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV-EPSALENGLG  233 (246)
Q Consensus       158 ~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~-~~~~l~~~~~  233 (246)
                      ++++   ++. +..|.+|+|+|++++         . +.+..++.++||.+.||        +|++++. ++++++++++
T Consensus       327 ~~~~~~~~~~-~~~~~~g~~~~~~~~---------~-~~~~~~l~~~gi~v~~~--------~Ris~~~~~~~~i~~~~~  387 (394)
T 2ay1_A          327 RDLSGSDRFG-FVAEHRGMFSRLGAT---------P-EQVKRIKEEFGIYMVGD--------SRINIAGLNDNTIPILAR  387 (394)
T ss_dssp             HHHHTSSTTT-HHHHCCSSEEECCCC---------H-HHHHHHHHHHCEECCTT--------CEEEGGGCCTTTHHHHHH
T ss_pred             HhcCCCCCee-EEcCCceEEEeeCCC---------H-HHHHHHHHhCCEEecCC--------CeEEeecCCHhhHHHHHH
Confidence            8863   355 456788999997553         2 45677888999999885        4999985 8899999999


Q ss_pred             HHHHH
Q 042445          234 RMKAF  238 (246)
Q Consensus       234 ~l~~~  238 (246)
                      +|.++
T Consensus       388 ~l~~~  392 (394)
T 2ay1_A          388 AIIEV  392 (394)
T ss_dssp             HHHHH
T ss_pred             HHHHc
Confidence            98765

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=99.96  E-value=2.4e-28  Score=202.89  Aligned_cols=192  Identities=18%  Similarity=0.214  Sum_probs=152.9

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      ++++||||||.+++.+++.+|+++|   | ++|+||+|.++...  .+  ...++..++++++.|+||.|+++|+|+||+
T Consensus       143 ~l~~p~nptG~~~~~~~l~~l~~~~---~-~li~De~~~~~~~~--~~--~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~  214 (335)
T 1uu1_A          143 FIPNPNNPTGHVFEREEIERILKTG---A-FVALDEAYYEFHGE--SY--VDFLKKYENLAVIRTFSKAFSLAAQRVGYV  214 (335)
T ss_dssp             EEESSCTTTCCCCCHHHHHHHHHTT---C-EEEEECTTHHHHCC--CC--GGGGGTCSSEEEEEESTTTTTCGGGCCEEE
T ss_pred             EEeCCCCCCCCCCCHHHHHHHHHhC---C-EEEEECcchhhcch--hH--HHHhhhCCCEEEEecchhhcCCcccCeEEE
Confidence            6699999999999999888888877   7 89999999987642  11  222344568899999999999999999999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG  171 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~  171 (246)
                      ++++        ++++.+......+ ++|++.|.++.++|+.  ..++++.++.++++++.+.+.|+++ ++. + .|.+
T Consensus       215 ~~~~--------~~~~~l~~~~~~~-~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~-~~~~  280 (335)
T 1uu1_A          215 VASE--------KFIDAYNRVRLPF-NVSYVSQMFAKVALDH--REIFEERTKFIVEERERMKSALREM-GYR-I-TDSR  280 (335)
T ss_dssp             EECH--------HHHHHHHHHSCTT-CSCHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHHHH-TCC-B-CCCC
T ss_pred             EeCH--------HHHHHHHHhcCCC-CcCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHC-CcE-E-cCCC
Confidence            9987        8888888765444 8899999999999985  4678888999999999999999887 665 3 4667


Q ss_pred             ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHH
Q 042445          172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAF  238 (246)
Q Consensus       172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~  238 (246)
                      |+|+|++++..       +.+.+.+.|.++||.+.|     .++++|+|++. ++++++++++|+++
T Consensus       281 ~~~~~~~~~~~-------~~~~~~~~l~~~gi~v~~-----~~~~iRis~~~-~~~i~~~~~~l~~~  334 (335)
T 1uu1_A          281 GNFVFVFMEKE-------EKERLLEHLRTKNVAVRS-----FREGVRITIGK-REENDMILRELEVF  334 (335)
T ss_dssp             SSEEEEECCTH-------HHHHHHHHHHHHTEEEEE-----ETTEEEEECCC-HHHHHHHHHHHHCC
T ss_pred             CeEEEEECCCC-------CHHHHHHHHHHCCEEEEE-----CCCeEEEEeCC-HHHHHHHHHHHHhh
Confidence            88999887641       333344556678999998     25799999975 45688888887653

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=99.96  E-value=8.9e-28  Score=201.95  Aligned_cols=207  Identities=18%  Similarity=0.168  Sum_probs=160.8

Q ss_pred             hhhhhhhcc-c----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcc-cEEEEc
Q 042445            2 ELINQDITR-E----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIV-PLLTLG   75 (246)
Q Consensus         2 e~~~~~~~~-~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~-~~i~~~   75 (246)
                      |.+++.+++ +    ++++||||||.+++.+++.+|+   +.+++++|+||+|+++.++.   ......+..+ +++++.
T Consensus       154 ~~l~~~i~~~~~~~v~~~~~~nptG~~~~~~~l~~l~---~~~~~~li~De~~~~~~~~~---~~~~~~~~~~~~~i~~~  227 (369)
T 3cq5_A          154 DVALEEIRAKQPDIVFVTTPNNPTGDVTSLDDVERII---NVAPGIVIVDEAYAEFSPSP---SATTLLEKYPTKLVVSR  227 (369)
T ss_dssp             HHHHHHHHHHCCSEEEEESSCTTTCCCCCHHHHHHHH---HHCSSEEEEECTTGGGCCSC---CGGGGTTTCTTTEEEEE
T ss_pred             HHHHHHhhccCCCEEEEeCCCCCCCCCCCHHHHHHHH---HhCCCEEEEECCchhhcCCc---chHHHHhhCCCCEEEEE
Confidence            445555543 2    7789999999999966666555   55669999999999887541   1222224445 789999


Q ss_pred             ccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445           76 SISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD  155 (246)
Q Consensus        76 s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  155 (246)
                      |+||.|+++|+|+||+++++        ++++.+......+ ++|++.|.++.++++.  ..++++.++.++++++.+.+
T Consensus       228 s~sK~~~~~G~r~G~~~~~~--------~~~~~l~~~~~~~-~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~  296 (369)
T 3cq5_A          228 TMSKAFDFAGGRLGYFVANP--------AFIDAVMLVRLPY-HLSALSQAAAIVALRH--SADTLGTVEKLSVERVRVAA  296 (369)
T ss_dssp             ESSSTTSCGGGCCEEEEECT--------HHHHHHHTTSCTT-CSCHHHHHHHHHHHHT--HHHHHTHHHHHHHHHHHHHH
T ss_pred             echHhcCCcccceEEEEeCH--------HHHHHHHHcCCCC-CCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHH
Confidence            99999998999999999998        8888887765444 6899999999999984  46788899999999999999


Q ss_pred             HhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHH
Q 042445          156 RLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRM  235 (246)
Q Consensus       156 ~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l  235 (246)
                      .|++. ++.. . +.+|+|+|++++.       +..++ .+.|.++||.+.||   +.++++|++++ ++++++++++.|
T Consensus       297 ~L~~~-g~~~-~-~~~~~~~~~~~~~-------~~~~l-~~~l~~~gi~v~~~---~~~~~iRis~~-~~~~i~~~~~~l  361 (369)
T 3cq5_A          297 RLEEL-GYAV-V-PSESNFVFFGDFS-------DQHAA-WQAFLDRGVLIRDV---GIAGHLRTTIG-VPEENDAFLDAA  361 (369)
T ss_dssp             HHHHH-TCEE-E-CCSSSEEEEECCS-------SHHHH-HHHHHHTTEECBCC---SCTTEEEEECC-CHHHHHHHHHHH
T ss_pred             HHHhC-CCEE-C-CCCCeEEEEECCC-------CHHHH-HHHHHHCCEEEEEC---CCCCeEEEEeC-CHHHHHHHHHHH
Confidence            99885 6663 3 5567888987751       24444 44567899999998   23689999999 788899999999


Q ss_pred             HHHHH
Q 042445          236 KAFYD  240 (246)
Q Consensus       236 ~~~~~  240 (246)
                      .++++
T Consensus       362 ~~~~~  366 (369)
T 3cq5_A          362 AEIIK  366 (369)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            88764

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=99.95  E-value=1.9e-26  Score=195.62  Aligned_cols=207  Identities=15%  Similarity=0.173  Sum_probs=157.2

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCccc-EEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVP-LLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~-~i~~~s~sK~~~~~g~r~G~   90 (246)
                      ++++|+||||.+++   +++|.++|++||+++|+||+|+.+.++..+.......+..++ .++++|+||.++++|   ||
T Consensus       178 ~~~~~~nptG~~~~---~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~~~G---G~  251 (398)
T 3a2b_A          178 CTDGIFSMEGDIVN---LPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLASLG---GF  251 (398)
T ss_dssp             EEESBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSSC---EE
T ss_pred             EEeCCCCCCCCccC---HHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEecccccccCCC---cE
Confidence            78899999999987   899999999999999999999988764322211222232334 599999999999888   99


Q ss_pred             EEeeCCCCCcchhhHHHHHHHH-hh-hcCCCCchHHH-HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccc
Q 042445           91 LVTSDPNGILQDSGIVDSIKIF-LN-ISSDPATFIQG-AVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPK  167 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~-~~-~~~~~~~~~q~-~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~  167 (246)
                      +++++        ++++.+... .. ..++.+.+.|. ++..+++.  ..++++.++.++++++.+.+.|+++ ++. +.
T Consensus       252 ~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~  319 (398)
T 3a2b_A          252 VAGDA--------DVIDFLKHNARSVMFSASMTPASVASTLKALEI--IQNEPEHIEKLWKNTDYAKAQLLDH-GFD-LG  319 (398)
T ss_dssp             EEECH--------HHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHH--HHHCTHHHHHHHHHHHHHHHHHHHT-TCC-BC
T ss_pred             EEeCH--------HHHHHHHHhcccceecCCCCHHHHHHHHHHHHH--HhhCHHHHHHHHHHHHHHHHHHHhc-CCC-cC
Confidence            99988        888888764 32 22345555665 55677774  2456788899999999999999987 666 34


Q ss_pred             CCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC---CCeEEEEeec--ChHHHHHHHHHHHHHHHHH
Q 042445          168 KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFAV--EPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       168 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~iRls~~~--~~~~l~~~~~~l~~~~~~~  242 (246)
                      .|. |+++|+.++...      +...+.+.|.++||.+.||..|..   ++++|++++.  +++++++++++|.++++++
T Consensus       320 ~~~-g~~~~~~~~~~~------~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~~  392 (398)
T 3a2b_A          320 ATE-SPILPIFIRSNE------KTFWVTKMLQDDGVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEKMVKVFKQA  392 (398)
T ss_dssp             SCC-SSEEEEECCCHH------HHHHHHHHHHHTTEECEEECTTTSCGGGCEEEEECCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             CCC-CCEEEEEcCCHH------HHHHHHHHHHHCCcEEEeeCCCCCCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence            454 789998886421      333444555667999999988763   6899999995  8999999999999998765


Q ss_pred             h
Q 042445          243 A  243 (246)
Q Consensus       243 ~  243 (246)
                      .
T Consensus       393 ~  393 (398)
T 3a2b_A          393 E  393 (398)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=99.94  E-value=1.7e-25  Score=189.83  Aligned_cols=206  Identities=14%  Similarity=0.086  Sum_probs=159.2

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccC-Cccc-CCCCCccccccCCcccEEEEccccccc-ccCCceE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYG-HLAF-GNTPFVSMGVFGSIVPLLTLGSISKRG-IVPGLRL   88 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~-~~~~-~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~g~r~   88 (246)
                      ++++||||||.+++   +++|.++|+++|+++|+||+|+ ++.. ++..+.+...+.+ +..+++.|+||.| +++|   
T Consensus       182 ~~~~~~nptG~~~~---~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~-~~di~~~s~sK~~~~~~g---  254 (401)
T 1fc4_A          182 ATDGVFSMDGVIAN---LKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMG-RVDIITGTLGKALGGASG---  254 (401)
T ss_dssp             EEESEETTTTEECC---HHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTT-CCSEEEEESSSTTCSSSC---
T ss_pred             EEeCCcCCCCCCCC---HHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCCCc-CCcEEEecchhhccCCCC---
Confidence            78999999999998   8999999999999999999996 7653 3433322222222 3569999999998 6666   


Q ss_pred             EEEEeeCCCCCcchhhHHHHHHHHh-h--hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCcc
Q 042445           89 GWLVTSDPNGILQDSGIVDSIKIFL-N--ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITC  165 (246)
Q Consensus        89 G~i~~~~~~~~~~~~~~~~~l~~~~-~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~  165 (246)
                      ||+++++        ++++.+.... .  .+++++++.+.++..+++..  ...++.++.++++++.+.+.|+++ ++..
T Consensus       255 G~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~-g~~~  323 (401)
T 1fc4_A          255 GYTAARK--------EVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMV--EAGSELRDRLWANARQFREQMSAA-GFTL  323 (401)
T ss_dssp             EEEEECH--------HHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHHHHHHT-TCCB
T ss_pred             EEEEcCH--------HHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHHHc-CCcc
Confidence            9999987        8888887653 2  24478999999998888742  124677888899999999999987 6663


Q ss_pred             ccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC---CCeEEEEee--cChHHHHHHHHHHHHHHH
Q 042445          166 PKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFA--VEPSALENGLGRMKAFYD  240 (246)
Q Consensus       166 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~iRls~~--~~~~~l~~~~~~l~~~~~  240 (246)
                       . |..++++|++++...      +...+.+.|.++||.+.||..|+.   .+++|++++  .+++++++++++|.++++
T Consensus       324 -~-~~~~~~~~~~~~~~~------~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  395 (401)
T 1fc4_A          324 -A-GADHAIIPVMLGDAV------VAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGK  395 (401)
T ss_dssp             -C-CSSSSEEEEEEECHH------HHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             -c-CCCCCEEEEEcCChH------HHHHHHHHHHHCCcEEeeecCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence             3 678889998886421      334445566678999999887754   468999998  489999999999999987


Q ss_pred             HHh
Q 042445          241 RHA  243 (246)
Q Consensus       241 ~~~  243 (246)
                      +..
T Consensus       396 ~~~  398 (401)
T 1fc4_A          396 QLG  398 (401)
T ss_dssp             HTT
T ss_pred             HhC
Confidence            653

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=99.94  E-value=2.5e-25  Score=188.47  Aligned_cols=208  Identities=13%  Similarity=0.067  Sum_probs=155.9

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccC-CcccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFG-SIVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      ++++|+||||.+++   +++|.++|++||+++|+||+|+...++..+.......+ ..+..++++|+||.++  |.+.||
T Consensus       180 ~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~--g~~gG~  254 (399)
T 3tqx_A          180 ATDGVFSMDGIIAD---LKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALG--GASGGY  254 (399)
T ss_dssp             EEESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSSSC--SSCCEE
T ss_pred             EEeCCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEecchHhcc--cCceEE
Confidence            88899999999999   89999999999999999999974433332222222222 1235599999999987  344499


Q ss_pred             EEeeCCCCCcchhhHHHHHHHH-hhh--cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccc
Q 042445           91 LVTSDPNGILQDSGIVDSIKIF-LNI--SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPK  167 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~-~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~  167 (246)
                      +++++        ++++.+... ...  +.+.+++.+.++...++.. ..+.++.++.++++++.+.+.|+++ ++.. .
T Consensus       255 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~  323 (399)
T 3tqx_A          255 TSGHK--------EIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELL-KTEGPQLRKQLQENSRYFRAGMEKL-GFQL-V  323 (399)
T ss_dssp             EEECH--------HHHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHHH-HHTHHHHHHHHHHHHHHHHHHHHHH-TCCB-C
T ss_pred             EEcCH--------HHHHHHHHhCcceeccCCCcHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHHc-CCCc-C
Confidence            99998        889988775 222  3367777777877777732 2668899999999999999999987 6663 3


Q ss_pred             CCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC---CCeEEEEee--cChHHHHHHHHHHHHHHHHH
Q 042445          168 KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFA--VEPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       168 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~iRls~~--~~~~~l~~~~~~l~~~~~~~  242 (246)
                       +..|.++|+.++...      +...+.+.|.++||.+.|+.++..   ++++|++++  .+++++++++++|.+++++.
T Consensus       324 -~~~~~~~~~~~~~~~------~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  396 (399)
T 3tqx_A          324 -PGNHPIIPVMLGDAQ------LATNMADHLLQEGIYVVGFSYPVVPMGKARIRVQMSAVHTQQQLDRAIEAFGQVGKKL  396 (399)
T ss_dssp             -CCSSSEEEEEEECHH------HHHHHHHHHHHTTEECCEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             -CCCCCEEEEEeCCHH------HHHHHHHHHHHCCCEEeeeCCCCCCCCCceEEEEeecCCCHHHHHHHHHHHHHHHHHh
Confidence             555677888776532      334445556678999998765432   579999998  48999999999999998764

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=99.94  E-value=5.2e-25  Score=185.59  Aligned_cols=205  Identities=13%  Similarity=0.073  Sum_probs=157.2

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      ++++|+||||.+.+   +++|.++|++||+++|+||+|+.+.+.   . +   +...+..+++.|+||.+++++ ++||+
T Consensus       151 ~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~~---~-~---~~~~~~di~~~s~sK~~~~~~-g~G~~  219 (386)
T 2dr1_A          151 TITYNETSTGVLNP---LPELAKVAKEHDKLVFVDAVSAMGGAD---I-K---FDKWGLDVVFSSSQKAFGVPP-GLAIG  219 (386)
T ss_dssp             EEESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTBTTBC---C-C---TTTTTCSEEEEETTSTTCCCS-SCEEE
T ss_pred             EEEeecCCcchhCC---HHHHHHHHHHcCCeEEEEccccccCcc---c-c---ccccCCcEEEEeccccccCCC-ceEEE
Confidence            78899999999987   899999999999999999999976542   1 1   222345699999999988763 38999


Q ss_pred             EeeCCCCCcchhhHHHHHH----------------HHh---hhcCCCCchHHHHHHHHHhhchHH-HHHHHHHHHHHHHH
Q 042445           92 VTSDPNGILQDSGIVDSIK----------------IFL---NISSDPATFIQGAVPQILEKTEEE-FFSKIIDILRETAD  151 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~----------------~~~---~~~~~~~~~~q~~~~~~l~~~~~~-~~~~~~~~~~~~~~  151 (246)
                      ++++        ++++.+.                ...   ...++.++..|.++..+++...+. .+++.++.++++++
T Consensus       220 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~  291 (386)
T 2dr1_A          220 AFSE--------RFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAK  291 (386)
T ss_dssp             EECH--------HHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             EECH--------HHHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            9998        8777662                111   223367888999998888752222 47888999999999


Q ss_pred             HHHHHhhcCCCCccccCCC---CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChH
Q 042445          152 KCCDRLKEIPCITCPKKPE---GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPS  226 (246)
Q Consensus       152 ~l~~~L~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~  226 (246)
                      .+.+.|+++ ++.. ..|.   .++++|++++...     +..++.. .|.++||.+.||..+..++++|++++  .+++
T Consensus       292 ~l~~~L~~~-g~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~  363 (386)
T 2dr1_A          292 MVREGVREI-GLDI-LAEPGHESPTITAVLTPPGI-----KGDEVYE-AMRKRGFELAKGYGSVKEKTFRIGHMGYMKFE  363 (386)
T ss_dssp             HHHHHHHHT-TCCB-SSCTTCBCSSEEEEECCTTC-----CHHHHHH-HHHHTTEECEECCGGGTTTEEEEECCSSCCHH
T ss_pred             HHHHHHHHc-CCee-CcCccccCCceEEEEcCCCC-----CHHHHHH-HHHHCCeEEecCccccCCCEEEEECCCCCCHH
Confidence            999999988 6763 4444   4788888876321     2445544 45566999999987766789999999  4899


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 042445          227 ALENGLGRMKAFYDRHA  243 (246)
Q Consensus       227 ~l~~~~~~l~~~~~~~~  243 (246)
                      ++++++++|.+++++..
T Consensus       364 ~i~~~~~~l~~~~~~~~  380 (386)
T 2dr1_A          364 DIQEMLDNLREVINELK  380 (386)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcC
Confidence            99999999999987754

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=99.93  E-value=8.9e-25  Score=185.96  Aligned_cols=208  Identities=14%  Similarity=0.122  Sum_probs=150.6

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHH-cCCEEEEccccCCcccCCCCCccccccCCcccEEEEcc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKK-LGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGS   76 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s   76 (246)
                      +.+++.++++    ++++||||||.+++   +++|.++|++ +|+++|+||+|..+.+..    ++ .   .++.+++.|
T Consensus       138 ~~l~~~i~~~t~~v~l~~p~NptG~v~~---l~~i~~la~~~~~~~li~De~~~~~~~~~----~~-~---~~~di~~~S  206 (404)
T 1e5e_A          138 GEVKKHMKPNTKIVYFETPANPTLKIID---MERVCKDAHSQEGVLVIADNTFCSPMITN----PV-D---FGVDVVVHS  206 (404)
T ss_dssp             THHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHTSTTCEEEEECTTTCTTTCC----GG-G---GTCSEEEEE
T ss_pred             HHHHHhcCCCCcEEEEECCCCCCCcccC---HHHHHHHHHhhcCCEEEEECCCchhhhCC----cc-c---cCCEEEEEc
Confidence            4566666544    88999999999996   8999999999 999999999999887541    22 1   246799999


Q ss_pred             cccccccCCceE-EEEEeeCCCCCcchhhHHH-HHHHHhhh--cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 042445           77 ISKRGIVPGLRL-GWLVTSDPNGILQDSGIVD-SIKIFLNI--SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADK  152 (246)
Q Consensus        77 ~sK~~~~~g~r~-G~i~~~~~~~~~~~~~~~~-~l~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~  152 (246)
                      +||.|+++|+|+ ||+++++        ++++ .+......  +.+++++.+.++.+.++.     +....+...++.+.
T Consensus       207 ~sK~~~~~g~ri~G~~~~~~--------~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~  273 (404)
T 1e5e_A          207 ATKYINGHTDVVAGLICGKA--------DLLQQIRMVGIKDITGSVISPHDAWLITRGLST-----LNIRMKAESENAMK  273 (404)
T ss_dssp             TTTTTTCSSCCCCEEEEECH--------HHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHH
T ss_pred             CccccCCCCCCeEEEEEECH--------HHHHHHHHHHHHhCCCCCCCHHHHHHHHHhHhH-----HHHHHHHHHHHHHH
Confidence            999999999998 9999998        8887 77766443  346889999998888874     33344445566666


Q ss_pred             HHHHhhcCCCCcc-------------ccCC----CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--
Q 042445          153 CCDRLKEIPCITC-------------PKKP----EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--  213 (246)
Q Consensus       153 l~~~L~~~~~~~~-------------~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--  213 (246)
                      +.+.|++.+.+..             +..|    .++++.| +++.        ..+.+.+++.+.|| +.+|..|+.  
T Consensus       274 l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~-~~~~--------~~~~~~~~l~~~~i-~~~~~s~G~~~  343 (404)
T 1e5e_A          274 VAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITF-ILKS--------GFEGAKKLLDNLKL-ITLAVSLGGCE  343 (404)
T ss_dssp             HHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEE-EETT--------HHHHHHHHHHTCSS-SEESSCCCSSS
T ss_pred             HHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEE-EeCC--------CHHHHHHHHHhCCC-ceeccCCCCcc
Confidence            6666665432211             1111    2666666 6753        33456778889999 556654431  


Q ss_pred             -------------------------CCeEEEEeecChHHHHHHHHHHHHHHHHHhhc
Q 042445          214 -------------------------KDWLRITFAVEPSALENGLGRMKAFYDRHAEK  245 (246)
Q Consensus       214 -------------------------~~~iRls~~~~~~~l~~~~~~l~~~~~~~~~~  245 (246)
                                               ++++|+|++.  ++++++++.|+++++...++
T Consensus       344 sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~--e~~~~li~~l~~al~~~~~~  398 (404)
T 1e5e_A          344 SLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI--EDADELIADFKQGLDALLRS  398 (404)
T ss_dssp             CEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS--SCHHHHHHHHHHHHHHHHCC
T ss_pred             eeeecccccccccCCHHHHHhcCCCCCeEEEEeCC--CCHHHHHHHHHHHHHHHHHh
Confidence                                     5799999998  66788888888888765543

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=99.93  E-value=2.6e-25  Score=188.17  Aligned_cols=212  Identities=10%  Similarity=0.093  Sum_probs=158.2

Q ss_pred             hhhhhhhcc-c----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcc
Q 042445            2 ELINQDITR-E----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGS   76 (246)
Q Consensus         2 e~~~~~~~~-~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s   76 (246)
                      |.+++.+++ +    ++++|+||||.+++   +++|.++|+++|+++|+||+|...   ..+. .   +...+..+++.|
T Consensus       149 ~~l~~~l~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~g---~~~~-~---~~~~~~di~~~s  218 (393)
T 1vjo_A          149 EELRTALETHRPAILALVHAETSTGARQP---LEGVGELCREFGTLLLVDTVTSLG---GVPI-F---LDAWGVDLAYSC  218 (393)
T ss_dssp             HHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHHHHHHHTCEEEEECTTTTT---TSCC-C---TTTTTCSEEECC
T ss_pred             HHHHHHHhhCCceEEEEeccCCCcceecc---HHHHHHHHHHcCCEEEEECCcccc---CcCC-c---ccccCccEEEEc
Confidence            445555544 3    88899999999987   778899999999999999999932   1111 1   223345689999


Q ss_pred             cccccccCCceEEEEEeeCCCCCcchhhHHHHHHHH----h----------------hhcC-CCCchHHHHHHHHHhhch
Q 042445           77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIF----L----------------NISS-DPATFIQGAVPQILEKTE  135 (246)
Q Consensus        77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~----~----------------~~~~-~~~~~~q~~~~~~l~~~~  135 (246)
                      +||.+++++ |+||+++++        ++++.++..    .                .... +++++.|.++..+++...
T Consensus       219 ~sK~l~~~~-~~G~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~  289 (393)
T 1vjo_A          219 SQKGLGCSP-GASPFTMSS--------RAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIA  289 (393)
T ss_dssp             SSSTTCSCS-SCEEEEECH--------HHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHH
T ss_pred             CcccccCCC-ceEEEEECH--------HHHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            999988888 999999998        888877432    0                1122 678889999999988533


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC---ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcC
Q 042445          136 EEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG---SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG  212 (246)
Q Consensus       136 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~  212 (246)
                      +.++++.++.++++++.+.+.|+++ ++. +..|.+   +.+++++++...     +..++...+++++||.+.||..|.
T Consensus       290 ~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~gi~v~~g~~~~  362 (393)
T 1vjo_A          290 QEGLANCWQRHQKNVEYLWERLEDI-GLS-LHVEKEYRLPTLTTVCIPDGV-----DGKAVARRLLNEHNIEVGGGLGEL  362 (393)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHHHHHT-TCC-BSSCGGGBCSSEEEEECCTTC-----CHHHHHHHHHHHHCEECEECCGGG
T ss_pred             HccHHHHHHHHHHHHHHHHHHHHHc-CCc-ccCCccccCCcEEEEEcCCCC-----CHHHHHHHHHhhCCEEEecCcccc
Confidence            4568889999999999999999987 676 344543   456777775321     345555554444599999999887


Q ss_pred             CCCeEEEEe-e--cChHHHHHHHHHHHHHH
Q 042445          213 LKDWLRITF-A--VEPSALENGLGRMKAFY  239 (246)
Q Consensus       213 ~~~~iRls~-~--~~~~~l~~~~~~l~~~~  239 (246)
                      .++++|+++ +  .+++++++++++|.+++
T Consensus       363 ~~~~iRis~~~~~~~~~~i~~~~~~l~~~l  392 (393)
T 1vjo_A          363 AGKVWRVGLMGFNSRKESVDQLIPALEQVL  392 (393)
T ss_dssp             TTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCccCChHHHHHHHHHHHHHHh
Confidence            789999994 3  36778999999998876

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=99.93  E-value=2.6e-26  Score=194.76  Aligned_cols=213  Identities=11%  Similarity=0.156  Sum_probs=152.5

Q ss_pred             hhhhhhhccc----cccCCcCCCcc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcc
Q 042445            2 ELINQDITRE----FSDFQVFHVGS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGS   76 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s   76 (246)
                      |.+++.++++    ++++|+||||. +++.+++++|.++|++||+++|+||+|.++.+.+.. .++..++...+++   |
T Consensus       174 ~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~-~~~~~~~~~~d~~---s  249 (397)
T 2ord_A          174 EDLRRKMSEDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKL-FAYQKYGVVPDVL---T  249 (397)
T ss_dssp             HHHHHHCCTTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS-SHHHHHTCCCSEE---E
T ss_pred             HHHHHHhhcCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccc-hhhhhhCCCCCee---e
Confidence            4455555443    88889999999 999999999999999999999999999987765532 2223333222333   7


Q ss_pred             cccccccCCceEEEEEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445           77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD  155 (246)
Q Consensus        77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  155 (246)
                      |||.++ +|+|+||+++++        +++ .+... ...++++|++.+.++.++|+...+   ++.++.++++++.+.+
T Consensus       250 ~sK~~~-~G~r~G~~~~~~--------~~~-~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~  316 (397)
T 2ord_A          250 TAKGLG-GGVPIGAVIVNE--------RAN-VLEPGDHGTTFGGNPLACRAGVTVIKELTK---EGFLEEVEEKGNYLMK  316 (397)
T ss_dssp             ECGGGG-TTSCCEEEEECS--------TTC-CCCTTSSCCSSTTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHH
T ss_pred             eccccC-CCcCeEEEEEch--------Hhc-ccCCCCcCCCCCCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHH
Confidence            899987 899999999988        555 44322 223447799999999988874222   4567778888888888


Q ss_pred             HhhcCC-CCccc-cCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHH
Q 042445          156 RLKEIP-CITCP-KKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENG  231 (246)
Q Consensus       156 ~L~~~~-~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~  231 (246)
                      .|++++ ++..+ ..+..|.++|++++...     +..++ .+.|.++||.+.|+.    ++++|++++  .++++++++
T Consensus       317 ~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~l-~~~l~~~gi~v~~~~----~~~iRis~~~~~~~e~i~~~  386 (397)
T 2ord_A          317 KLQEMKEEYDVVADVRGMGLMIGIQFREEV-----SNREV-ATKCFENKLLVVPAG----NNTIRFLPPLTVEYGEIDLA  386 (397)
T ss_dssp             HHHHHHHHCTTEEEEEEETTEEEEEECTTS-----CHHHH-HHHHHHTTEECEEET----TTEEEECCCTTCCHHHHHHH
T ss_pred             HHHHHHHhCCceEEEEEEeEEEEEEECChH-----HHHHH-HHHHHHCCCEEccCC----CCEEEEECCcCCCHHHHHHH
Confidence            887642 12211 12334677888886421     24444 445667999999974    689999966  489999999


Q ss_pred             HHHHHHHHHH
Q 042445          232 LGRMKAFYDR  241 (246)
Q Consensus       232 ~~~l~~~~~~  241 (246)
                      +++|.+++++
T Consensus       387 ~~~l~~~l~~  396 (397)
T 2ord_A          387 VETLKKVLQG  396 (397)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhh
Confidence            9999998764

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=99.93  E-value=1.3e-25  Score=191.93  Aligned_cols=209  Identities=19%  Similarity=0.175  Sum_probs=144.9

Q ss_pred             cCCcCCCc-cCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEE
Q 042445           14 DFQVFHVG-SGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLV   92 (246)
Q Consensus        14 ~~p~NPtG-~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~   92 (246)
                      .+||| || .++|.+++++|.++|++||+++|+||+|+++.+.+... .+...+   ..+.+.||||.|++ |+|+||++
T Consensus       207 p~~~n-tG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~~~~~---~~~di~s~sK~~~~-GlriG~~~  280 (426)
T 1sff_A          207 PVQGE-GGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLF-AMEQMG---VAPDLTTFAKSIAG-GFPLAGVT  280 (426)
T ss_dssp             SBCTT-TTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-GGGGTT---SCCSEEEECGGGGT-SSCCEEEE
T ss_pred             cccCC-CCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccchh-hhhhcC---CCCCEEEEcccccC-CCceEEEE
Confidence            35567 99 88899999999999999999999999999877655322 222222   12334599999987 99999999


Q ss_pred             eeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc----CCCCcccc
Q 042445           93 TSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKE----IPCITCPK  167 (246)
Q Consensus        93 ~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~  167 (246)
                      +++        ++++.+... ...++++|++.|.++.++|+...+   ....+.++++++.+.+.|++    ++.+. ..
T Consensus       281 ~~~--------~~~~~l~~~~~~~~~~~~~~~~~a~~aal~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~  348 (426)
T 1sff_A          281 GRA--------EVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQ---ENLLQKANDLGQKLKDGLLAIAEKHPEIG-DV  348 (426)
T ss_dssp             EEH--------HHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHHTCTTEE-EE
T ss_pred             EcH--------HHHhhhccCCcCcCCCCCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCCCeE-EE
Confidence            998        887776542 223447899999999877763221   12344555566666665554    33332 23


Q ss_pred             CCCCceEEEEEecccccc--CCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHHHHHHh
Q 042445          168 KPEGSMFVMVKLNYSLLE--GINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       168 ~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~~~~~  243 (246)
                      .+. |+|+|+++....-.  +...+...+...|.++||.+.||..+  ++++|++++  .+++++++++++|.+++++.+
T Consensus       349 ~~~-g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~--~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~~~  425 (426)
T 1sff_A          349 RGL-GAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPY--YNVLRILVPLTIEDAQIRQGLEIISQCFDEAK  425 (426)
T ss_dssp             EEE-TTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEESTT--SCEEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred             EEE-EEEEEEEEecCccccCCChHHHHHHHHHHHHCCcEEecCCCC--CCEEEEECCccCCHHHHHHHHHHHHHHHHHHh
Confidence            344 78999988531000  00012333455566789999998764  689999987  389999999999999987764

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=99.93  E-value=3.5e-25  Score=189.69  Aligned_cols=209  Identities=16%  Similarity=0.113  Sum_probs=157.0

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccC-CcccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFG-SIVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      ++++++||||.+++   +++|.++|++||+++|+||+|+.+.++..+......++ ..+..+++.||||.++++|   ||
T Consensus       199 ~~~~~~n~tG~~~~---l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di~~~s~sK~~g~~g---G~  272 (427)
T 2w8t_A          199 VLEGVYSMLGDIAP---LKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSVGTVG---GF  272 (427)
T ss_dssp             EEESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSCC---EE
T ss_pred             EEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcCCCcCCcEEEecchhhhccCC---CE
Confidence            88889999999998   89999999999999999999999887632222221122 2245799999999998887   99


Q ss_pred             EEeeCCCCCcchhhHHHHHHHH-hh--hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccc
Q 042445           91 LVTSDPNGILQDSGIVDSIKIF-LN--ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPK  167 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~-~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~  167 (246)
                      +++++        ++++.+... ..  .+++.+++.+.++..+++..  ..+++.++.++++++.+.+.|+++ ++....
T Consensus       273 v~~~~--------~l~~~l~~~~~~~~~~~~~~~~~~aa~~~al~~~--~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~  341 (427)
T 2w8t_A          273 VVSNH--------PKFEAVRLACRPYIFTASLPPSVVATATTSIRKL--MTAHEKRERLWSNARALHGGLKAM-GFRLGT  341 (427)
T ss_dssp             EEECC--------TTGGGGGGTCHHHHSSCCCCHHHHHHHHHHHHHH--TSCHHHHHHHHHHHHHHHHHHHHH-TCEESC
T ss_pred             EEeCH--------HHHHHHHHhcccccccCCCCHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHHHc-CCcccC
Confidence            99987        777766554 22  23367787777777777742  235778888999999999999887 665322


Q ss_pred             CCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC---CCeEEEEeec--ChHHHHHHHHHHHHHHHHH
Q 042445          168 KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFAV--EPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       168 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~iRls~~~--~~~~l~~~~~~l~~~~~~~  242 (246)
                      .+..|.++|+.++...      +...+.+.|.++||.+.|+..|+.   .+++|++++.  +++++++++++|.+++++.
T Consensus       342 ~~~~~~~~~~~~~~~~------~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRi~~~~~~t~e~i~~~~~~l~~~l~~~  415 (427)
T 2w8t_A          342 ETCDSAIVAVMLEDQE------QAAMMWQALLDGGLYVNMARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQAAGRAV  415 (427)
T ss_dssp             SSCCSSEEEEEESSHH------HHHHHHHHHHHTTEECEEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEEECCHH------HHHHHHHHHHHCCeEEeeeCCCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence            3425678888886431      334445556677999999887754   4699999995  8999999999999998876


Q ss_pred             h
Q 042445          243 A  243 (246)
Q Consensus       243 ~  243 (246)
                      .
T Consensus       416 ~  416 (427)
T 2w8t_A          416 G  416 (427)
T ss_dssp             T
T ss_pred             C
Confidence            5

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=99.93  E-value=7.8e-25  Score=185.80  Aligned_cols=208  Identities=17%  Similarity=0.117  Sum_probs=152.4

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      ++++|+||||.+++   +++|.++|++||+++|+||+|+.+.++..+.......+. ....++++|+||.|+++|   ||
T Consensus       183 ~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~~G---G~  256 (401)
T 2bwn_A          183 AFESVYSMDGDFGP---IKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFG---GY  256 (401)
T ss_dssp             EEESBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSCC---EE
T ss_pred             EEecCcCCCCCcCC---HHHHHHHHHHcCCEEEEeccccccccCCCCceeeeccCccccCcEEEeechhhccCCC---CE
Confidence            88999999999998   789999999999999999999966554322111111121 124689999999999888   99


Q ss_pred             EEeeCCCCCcchhhHHHHHHHHh-h--hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccc
Q 042445           91 LVTSDPNGILQDSGIVDSIKIFL-N--ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPK  167 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~~-~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~  167 (246)
                      +++++        ++++.+.... .  ...+.+++.+.++..+++......+++.++.++++++.+.+.|+++ ++. +.
T Consensus       257 ~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~  326 (401)
T 2bwn_A          257 IAASA--------RMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL-GMP-II  326 (401)
T ss_dssp             EEECH--------HHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH-TCC-BC
T ss_pred             EecCH--------HHHHHHHHhCcCceecCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHC-CCc-cc
Confidence            99987        8888877542 2  2334566788777777764223335778888999999999999887 666 34


Q ss_pred             CCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC---CCeEEEEeec--ChHHHHHHHHHHHHHHHH
Q 042445          168 KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFAV--EPSALENGLGRMKAFYDR  241 (246)
Q Consensus       168 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~iRls~~~--~~~~l~~~~~~l~~~~~~  241 (246)
                      .+.++ ++|+.++...     +..++...++.++||.+.|+..|+.   .+++|++++.  +++++++++++|++++++
T Consensus       327 ~~~~~-~~~~~~~~~~-----~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~  399 (401)
T 2bwn_A          327 DHGSH-IVPVVIGDPV-----HTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLWAR  399 (401)
T ss_dssp             CCSSS-CEEEECCCHH-----HHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC--
T ss_pred             CCCCC-eEEEEeCChH-----HHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Confidence            55554 7888776421     1344444444688999999887754   2689999994  899999999999988764

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=99.93  E-value=7.5e-25  Score=184.82  Aligned_cols=201  Identities=12%  Similarity=0.052  Sum_probs=152.6

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccC--CCCCccccccCCcccEEEEcccccccccCCceEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFG--NTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLG   89 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~--~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G   89 (246)
                      ++++||||||.+++   +++|.++|++||+++|+||+|..+.++  +...  ...++.. ..++++|+||.++++|   |
T Consensus       173 ~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~--~~~~~~~-~di~~~s~sK~~~~~G---G  243 (384)
T 1bs0_A          173 VTEGVFSMDGDSAP---LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGS--CWLQKVK-PELLVVTFGKGFGVSG---A  243 (384)
T ss_dssp             EEESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCH--HHHTTCC-CSEEEEESSSTTSSCC---E
T ss_pred             EEeCCCCCCCCccC---HHHHHHHHHHcCcEEEEECCcccceecCCCCch--HHhcCCC-CcEEEeeccchhhccC---c
Confidence            77889999999998   789999999999999999999877653  2221  1222221 2389999999999878   9


Q ss_pred             EEEeeCCCCCcchhhHHHHHHHHh-hh--cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccc
Q 042445           90 WLVTSDPNGILQDSGIVDSIKIFL-NI--SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCP  166 (246)
Q Consensus        90 ~i~~~~~~~~~~~~~~~~~l~~~~-~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~  166 (246)
                      |+++++        ++++.+.... ..  +++++++.+.++.++++...+.+.++.++.++++++.+.+.|+++ ++.. 
T Consensus       244 ~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-  313 (384)
T 1bs0_A          244 AVLCSS--------TVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDL-PFTL-  313 (384)
T ss_dssp             EEEECH--------HHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTS-SCEE-
T ss_pred             EEEeCH--------HHHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc-CCcc-
Confidence            999987        8888887652 22  236889999888888874221267788899999999999999987 5653 


Q ss_pred             cCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC---CCeEEEEeec--ChHHHHHHHHHHHHH
Q 042445          167 KKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFAV--EPSALENGLGRMKAF  238 (246)
Q Consensus       167 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~iRls~~~--~~~~l~~~~~~l~~~  238 (246)
                       .+.+++++|++++...      +...+.+.|.++||.+.|+..|+.   .+++|++++.  +++++++++++|.++
T Consensus       314 -~~~~~~~~~~~~~~~~------~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~Ri~~~~~~~~~~i~~~~~~l~~~  383 (384)
T 1bs0_A          314 -ADSCSAIQPLIVGDNS------RALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN  383 (384)
T ss_dssp             -CSCCSSBCCEEEESHH------HHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred             -cCCCCCEEEEEeCCHH------HHHHHHHHHHHCCcEEEeecCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence             3466778888886321      334445556677999999887753   4799999995  899999999998764

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=99.93  E-value=1.3e-25  Score=193.71  Aligned_cols=217  Identities=14%  Similarity=0.082  Sum_probs=150.6

Q ss_pred             cccCCcCCCc--cCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEE
Q 042445           12 FSDFQVFHVG--SGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLG   89 (246)
Q Consensus        12 ~~~~p~NPtG--~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G   89 (246)
                      +++.|+||+|  .+++.+++++|.++|++||+++|+||+|.++...+..+ .....+.   ...+.||||.+++ |+|+|
T Consensus       229 vi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~-a~~~~~~---~pdi~t~sK~~~~-G~~~G  303 (453)
T 4ffc_A          229 IIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWF-ASEHEGI---VPDIVTMAKGIAG-GMPLS  303 (453)
T ss_dssp             EEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-THHHHTC---CCSEEEECGGGGT-TSSCE
T ss_pred             EEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccccc-hhhhcCC---CcchHhhhhhhcC-CcCeE
Confidence            8889989887  55588899999999999999999999999887665322 2222221   2225579999876 89999


Q ss_pred             EEEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHHHHHhhcCCCCcccc
Q 042445           90 WLVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEE-EFFSKIIDILRETADKCCDRLKEIPCITCPK  167 (246)
Q Consensus        90 ~i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~  167 (246)
                      |+++++        ++++.+... ...+++.|+++|+++.++|+...+ .+.++.++.....++.+.+.+++++.+..  
T Consensus       304 ~~~~~~--------~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~--  373 (453)
T 4ffc_A          304 AVTGRA--------ELMDAVYAGGLGGTYGGNPVTCAAAVAALGVMRELDLPARARAIEASVTSRLSALAEEVDIIGE--  373 (453)
T ss_dssp             EEEEEH--------HHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEEE--
T ss_pred             EEEECH--------HHHhhhcccCcCCCCCcCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEE--
Confidence            999988        888877644 334558899999999999984322 33444444444444445555555654432  


Q ss_pred             CCCCceEEEEEecccccc-CCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHHhh
Q 042445          168 KPEGSMFVMVKLNYSLLE-GINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDRHAE  244 (246)
Q Consensus       168 ~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~~~  244 (246)
                      .+..|.++|+.+...... ........+...+.++||.+.|+..|  .+++|++++.  +++++++++++|.+++++..+
T Consensus       374 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~--~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~  451 (453)
T 4ffc_A          374 VRGRGAMLAIEIVKPGTLEPDAALTKSIAAEALSQGVLILTCGTF--GNVIRLLPPLVIGDDLLDEGITALSDIIRAKAS  451 (453)
T ss_dssp             EEEETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECCEECTT--SCEEEECCCTTCCHHHHHHHHHHHHHHHHHHC-
T ss_pred             EEeeceEEEEEEecCcccCCCHHHHHHHHHHHHhCCCEEecCCCC--CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            334477888877431000 00012444566677899999997654  5789998774  899999999999999988765


Q ss_pred             c
Q 042445          245 K  245 (246)
Q Consensus       245 ~  245 (246)
                      +
T Consensus       452 ~  452 (453)
T 4ffc_A          452 H  452 (453)
T ss_dssp             -
T ss_pred             c
Confidence            4

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=99.93  E-value=1.3e-24  Score=186.26  Aligned_cols=226  Identities=13%  Similarity=0.102  Sum_probs=149.2

Q ss_pred             hhhhhhhc----cc---cccCC-cC-CCcc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCcccccc-CCccc
Q 042445            2 ELINQDIT----RE---FSDFQ-VF-HVGS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVF-GSIVP   70 (246)
Q Consensus         2 e~~~~~~~----~~---~~~~p-~N-PtG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~-~~~~~   70 (246)
                      +.+++.++    ..   ++++| || |+|. +++.+++++|.++|++||+++|+||+|.++.+.+..+ ....+ +...+
T Consensus       177 ~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~~~-~~~~~~~~~~d  255 (430)
T 3i4j_A          177 EGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPL-ALSRWSGVTPD  255 (430)
T ss_dssp             THHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-GGGGTTTCCCS
T ss_pred             HHHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchh-hhhhhcCCCCc
Confidence            45555554    22   55555 45 7886 6788889999999999999999999999987765422 33333 22222


Q ss_pred             EEEEcccccccccCC-ceEEEEEeeCCCCCcchhhHHHHHHHH-----hhhcCCCCchHHHHHHHHHhhch-HHHHHHHH
Q 042445           71 LLTLGSISKRGIVPG-LRLGWLVTSDPNGILQDSGIVDSIKIF-----LNISSDPATFIQGAVPQILEKTE-EEFFSKII  143 (246)
Q Consensus        71 ~i~~~s~sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~  143 (246)
                         +.+|||.+++ | +|+||+++++        ++++.+...     ...+++.|+++|.++.++|+... +.+.++.+
T Consensus       256 ---i~t~sK~l~~-G~~r~G~~~~~~--------~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~  323 (430)
T 3i4j_A          256 ---IAVLGKGLAA-GYAPLAGLLAAP--------QVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVEREDLTGAAK  323 (430)
T ss_dssp             ---EEEECGGGTT-TSSCCEEEEECH--------HHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred             ---EEEEcccccC-CccccEEEEECH--------HHHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHHcccHHHHHH
Confidence               3368999875 9 9999999988        999988863     33445889999999999998533 23455555


Q ss_pred             HHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEeccccccCC---CChHHHHHHHHHhcCeEEecCCCcC-C--CCeE
Q 042445          144 DILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGI---NSDMEFALKLAKEESVIVLPGITVG-L--KDWL  217 (246)
Q Consensus       144 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~ll~~~gi~v~pg~~f~-~--~~~i  217 (246)
                      +.....++.+.+.+++++++.. ..+ .|.|+++.+........   ......+.+.+.++||.++|+..+. .  ++++
T Consensus       324 ~~~~~~~~~l~~~~~~~~~~~~-~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~~i  401 (430)
T 3i4j_A          324 ERGAQLLAGLQALQARFPQMMQ-VRG-TGLLLGVVLGDLATGQAFETPGIASRIGAAALKRGLITYPGSGAEPNGRGDHL  401 (430)
T ss_dssp             HHHHHHHHHHHHHHHHCTTEEE-EEE-ETTEEEEEEC------------CHHHHHHHHHHTTEECC-----------CEE
T ss_pred             HHHHHHHHHHHHHHHhCCCeEE-EEE-EEEEEEEEeccccccCCCccHHHHHHHHHHHHhCCCEEEecccccCCCCCCEE
Confidence            5555555555555555665542 333 46677777753210000   0012344556778999999984322 1  6889


Q ss_pred             EEEee--cChHHHHHHHHHHHHHHHHH
Q 042445          218 RITFA--VEPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       218 Rls~~--~~~~~l~~~~~~l~~~~~~~  242 (246)
                      |++++  .+++++++++++|++++++.
T Consensus       402 Ri~~~~~~t~e~i~~~l~~l~~~l~~~  428 (430)
T 3i4j_A          402 LLGPPLSITAAEVDGLLALLAGALEDV  428 (430)
T ss_dssp             EECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence            99988  48999999999999999765

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=99.93  E-value=3.1e-25  Score=188.41  Aligned_cols=219  Identities=16%  Similarity=0.170  Sum_probs=157.8

Q ss_pred             hhhhhhhccc---cccCCcCCCccCC--ChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcc
Q 042445            2 ELINQDITRE---FSDFQVFHVGSGF--SGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGS   76 (246)
Q Consensus         2 e~~~~~~~~~---~~~~p~NPtG~~~--~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s   76 (246)
                      |.+++.++++   ++.+|+||||.++  +.+++++|.++|++||+++|+||+|+++.+.+..+ +....+...+++   |
T Consensus       174 ~~l~~~l~~~~~~v~~~p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~~~~~~~~d~~---t  249 (406)
T 4adb_A          174 NSASALIDDSTCAVIVEPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELY-AYMHYGVTPDLL---T  249 (406)
T ss_dssp             HHHHTTCSTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS-HHHHHTCCCSEE---E
T ss_pred             HHHHHHhcCCeEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhH-HHHhcCCCCCEE---E
Confidence            3455555543   4445999999998  99999999999999999999999999887766433 222233333444   6


Q ss_pred             cccccccCCceEEEEEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445           77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD  155 (246)
Q Consensus        77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  155 (246)
                      |||.++ +|+|+||+++++        ++++.+... ...+++.+++.+.++.++++....   ++..+.++++++.+.+
T Consensus       250 ~sK~~~-~G~r~G~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~  317 (406)
T 4adb_A          250 TAKALG-GGFPVGALLATE--------ECARVMTVGTHGTTYGGNPLASAVAGKVLELINT---PEMLNGVKQRHDWFVE  317 (406)
T ss_dssp             ECGGGG-TTSCCEEEEECH--------HHHHTCCTTSSCCSSTTCHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHH
T ss_pred             echhhc-CCCCeEEEEEcH--------HHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHH
Confidence            799998 899999999988        888877655 334457899999999988874222   4666677777788887


Q ss_pred             HhhcCCC-Cccc-cCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHH
Q 042445          156 RLKEIPC-ITCP-KKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENG  231 (246)
Q Consensus       156 ~L~~~~~-~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~  231 (246)
                      .|+++.. ...+ ..+..|+++++.++...   ..+..++ .+.|.++||.+.|+.    ++++|+++.  .++++++++
T Consensus       318 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~-~~~l~~~gi~v~~~~----~~~iRi~~~~~~~~e~i~~~  389 (406)
T 4adb_A          318 RLNTINHRYGLFSEVRGLGLLIGCVLNADY---AGQAKQI-SQEAAKAGVMVLIAG----GNVVRFAPALNVSEEEVTTG  389 (406)
T ss_dssp             HHHHHHHHHCCEEEEEEETTEEEEEECTTT---TTCHHHH-HHHHHHTTEECEESS----TTEEEECCCTTCCHHHHHHH
T ss_pred             HHHHHHHhCCCceEEEEEEEEEEEEEeCCc---HHHHHHH-HHHHHHCCcEEeecC----CCeEEEECCCCCCHHHHHHH
Confidence            7766311 1101 12235788888886531   0023444 555667799999965    789999655  489999999


Q ss_pred             HHHHHHHHHHHhh
Q 042445          232 LGRMKAFYDRHAE  244 (246)
Q Consensus       232 ~~~l~~~~~~~~~  244 (246)
                      +++|.+++++..+
T Consensus       390 ~~~l~~~l~~~~~  402 (406)
T 4adb_A          390 LDRFAAACEHFVS  402 (406)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999987654

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=99.93  E-value=4.1e-25  Score=189.43  Aligned_cols=213  Identities=14%  Similarity=0.130  Sum_probs=147.1

Q ss_pred             cccCCc-CCCcc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEE
Q 042445           12 FSDFQV-FHVGS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLG   89 (246)
Q Consensus        12 ~~~~p~-NPtG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G   89 (246)
                      ++++|+ ||||. +++.+++++|.++|++||+++|+||+|+++.+.+..+ .....+...+   +.||||.|++ |+|+|
T Consensus       207 vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~~~-~~~~~~~~~d---i~s~sK~~~~-G~~ig  281 (433)
T 1zod_A          207 FIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMF-ACQRDGVTPD---ILTLSKTLGA-GLPLA  281 (433)
T ss_dssp             EEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-THHHHTCCCS---EEEECHHHHT-TSSCE
T ss_pred             EEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCchHh-HHhhcCCCCC---EEEecccccC-CCCee
Confidence            666774 78996 6788999999999999999999999999887655322 2222222222   3489999986 99999


Q ss_pred             EEEeeCCCCCcchhhHHHHHHHHh---hhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc----CCC
Q 042445           90 WLVTSDPNGILQDSGIVDSIKIFL---NISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKE----IPC  162 (246)
Q Consensus        90 ~i~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~  162 (246)
                      |+++++        ++++.+....   ..+++.|++++.++.++++...+   +...+.++++++.+.+.|++    ++.
T Consensus       282 ~~~~~~--------~~~~~~~~~~~~~~~t~~~~~~~~~a~~aal~~~~~---~~~~~~~~~~~~~l~~~l~~l~~~~~~  350 (433)
T 1zod_A          282 AIVTSA--------AIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQR---DGLVARANVMGDRLRRGLLDLMERFDC  350 (433)
T ss_dssp             EEEECH--------HHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             EEEEhH--------HHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            999998        8888887631   13447799999998888874222   12344555566666666654    343


Q ss_pred             CccccCCCCceEEEEEeccccccC--CCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHH
Q 042445          163 ITCPKKPEGSMFVMVKLNYSLLEG--INSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAF  238 (246)
Q Consensus       163 ~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~  238 (246)
                      +. .. +..|.|+|++++...-.+  .......+.+.+.++||.+.||..|+.++++|++++  .+++++++++++|.++
T Consensus       351 ~~-~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~lRi~~~~~~t~~~i~~~l~~l~~~  428 (433)
T 1zod_A          351 IG-DV-RGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQA  428 (433)
T ss_dssp             EE-EE-EEETTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCEECCTTSCCEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred             eE-EE-EEEEEEEEEEEecCccccCCChHHHHHHHHHHHHCCCeEeccCCCCCCCEEEEECCcCCCHHHHHHHHHHHHHH
Confidence            33 22 334677788876320000  001233344556689999999887755689999876  4899999999999999


Q ss_pred             HHHH
Q 042445          239 YDRH  242 (246)
Q Consensus       239 ~~~~  242 (246)
                      +++.
T Consensus       429 l~~~  432 (433)
T 1zod_A          429 IERA  432 (433)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8764

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=99.92  E-value=4e-25  Score=185.88  Aligned_cols=204  Identities=14%  Similarity=0.193  Sum_probs=150.6

Q ss_pred             hhhhhhhccc----cccCCcCCCccC-CChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSG-FSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGS   76 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~-~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s   76 (246)
                      |.+++.++++    ++++|+||||.+ .+.+++++|.++|++||+++|+||+|+++...+..+ ++..++...+++   |
T Consensus       163 ~~l~~~l~~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~-~~~~~~~~~d~~---s  238 (375)
T 2eh6_A          163 DSVYKLLDEETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFY-AYQHFNLKPDVI---A  238 (375)
T ss_dssp             HHHHTTCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-GGGGGTCCCSEE---E
T ss_pred             HHHHHHhcCCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcch-hhhhcCCCCCEE---E
Confidence            3455555433    778899999999 568899999999999999999999999866544322 333333222333   7


Q ss_pred             cccccccCCceEEEEEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445           77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD  155 (246)
Q Consensus        77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  155 (246)
                      |||.++ +|+|+||+++++        ++++.+... ...+++.+++.+.++.++|+..     .+..+.++++++.+.+
T Consensus       239 ~SK~~~-~g~~~G~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~l~~  304 (375)
T 2eh6_A          239 LAKGLG-GGVPIGAILARE--------EVAQSFTPGSHGSTFGGNPLACRAGTVVVDEV-----EKLLPHVREVGNYFKE  304 (375)
T ss_dssp             ECGGGG-TTSCCEEEEEEH--------HHHTTCCTTSCCCSSTTCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
T ss_pred             Eccccc-CCCCeEEEEEcH--------HHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence            889987 699999999998        877766552 2223367899999888887742     2677788889999999


Q ss_pred             HhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHH
Q 042445          156 RLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLG  233 (246)
Q Consensus       156 ~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~  233 (246)
                      .|++++. . . .+..|+++|++++..       ..++.. .|.++||.+.|+.    ++++|++++  .++++++++++
T Consensus       305 ~L~~~~~-~-~-~~~~g~~~~~~~~~~-------~~~~~~-~l~~~gi~~~~~~----~~~iRi~~~~~~~~~~i~~~~~  369 (375)
T 2eh6_A          305 KLKELGK-G-K-VKGRGLMLGLELERE-------CKDYVL-KALEKGLLINCTA----GKVLRFLPPLIIQKEHIDRAIS  369 (375)
T ss_dssp             HHHHTTS-S-E-EEEETTEEEEECSSC-------CHHHHH-HHHHTTEECEEET----TTEEEECCCTTCCHHHHHHHHH
T ss_pred             HHHHHhc-C-C-ceEEEEEEEEEEcCc-------HHHHHH-HHHHCCCEEecCC----CCEEEEECCCCCCHHHHHHHHH
Confidence            9988743 2 2 345688899887631       345544 4557999999863    689999987  38999999999


Q ss_pred             HHHHH
Q 042445          234 RMKAF  238 (246)
Q Consensus       234 ~l~~~  238 (246)
                      +|+++
T Consensus       370 ~l~~~  374 (375)
T 2eh6_A          370 VLREI  374 (375)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99875

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=99.92  E-value=2.5e-24  Score=183.31  Aligned_cols=215  Identities=13%  Similarity=0.071  Sum_probs=155.8

Q ss_pred             hhhhhhhcc---c--cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEc
Q 042445            2 ELINQDITR---E--FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLG   75 (246)
Q Consensus         2 e~~~~~~~~---~--~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~   75 (246)
                      +.+++.+++   +  ++++|+||||.+++   +++|.++|++||+++|+||+|+++.++..+.......+. .+..+++.
T Consensus       176 ~~le~~l~~~~~~~vi~~~~~nptG~~~~---l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~di~~~  252 (409)
T 3kki_A          176 DHLRMLIQRHGPGIIVVDSIYSTLGTIAP---LAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTA  252 (409)
T ss_dssp             HHHHHHHHHHCSCEEEEESBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEE
T ss_pred             HHHHHHHHhcCCeEEEECCCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCccccccCCCCCcchhhcCCCCCCCEEEe
Confidence            445555543   2  88899999999999   899999999999999999999986554322212122221 23458899


Q ss_pred             ccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHH-hh--hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 042445           76 SISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIF-LN--ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADK  152 (246)
Q Consensus        76 s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~-~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~  152 (246)
                      |+||.|+++|   ||+++++        ++++.+... ..  .+...++..+.++.+.++.  ....++.++.++++++.
T Consensus       253 s~sK~~~~~g---g~v~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~--~~~~~~~~~~~~~~~~~  319 (409)
T 3kki_A          253 SLAKTFAYRA---GAIWCNN--------EVNRCVPFISYPAIFSSTLLPYEAAGLETTLEI--IESADNRRQHLDRMARK  319 (409)
T ss_dssp             ESSSTTCSSC---EEEEESS--------SGGGTHHHHCHHHHHSBCCCHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHH
T ss_pred             ecchhhCCCc---eEEEECH--------HHHHHHHHhCcCccccCCCcHHHHHHHHHHHHH--HhcCHHHHHHHHHHHHH
Confidence            9999998876   9999988        666666553 22  3335677777777777763  22236788889999999


Q ss_pred             HHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC---CCeEEEEeec--ChHH
Q 042445          153 CCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFAV--EPSA  227 (246)
Q Consensus       153 l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~iRls~~~--~~~~  227 (246)
                      +.+.|+++ ++..   +.+++++|+.++...      +...+.+.|.++||.+.|+..+..   .+++|+++..  ++++
T Consensus       320 l~~~L~~~-g~~~---~~~~~~~~~~~~~~~------~~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~  389 (409)
T 3kki_A          320 LRIGLSQL-GLTI---RSESQIIGLETGDER------NTEKVRDYLESNGVFGSVFCRPATSKNKNIIRLSLNSDVNDEQ  389 (409)
T ss_dssp             HHHHHHTT-TCCC---CCSSSEEEEEEESHH------HHHHHHHHHHHTTEECEEECTTSSCTTCEEEEEECCTTCCHHH
T ss_pred             HHHHHHHc-CCcc---CCCCCEEEEEeCCHH------HHHHHHHHHHHCCceEeeeCCCCcCCCCcEEEEEccCCCCHHH
Confidence            99999988 5542   257889998886532      333345556677999988654422   5899999984  8999


Q ss_pred             HHHHHHHHHHHHHHH
Q 042445          228 LENGLGRMKAFYDRH  242 (246)
Q Consensus       228 l~~~~~~l~~~~~~~  242 (246)
                      +++++++|.++++..
T Consensus       390 i~~~~~~l~~~l~~~  404 (409)
T 3kki_A          390 IAKIIEVCSDAVNYG  404 (409)
T ss_dssp             HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhcC
Confidence            999999999998753

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=99.92  E-value=2.7e-24  Score=182.29  Aligned_cols=212  Identities=11%  Similarity=0.085  Sum_probs=156.2

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.++++    ++++|+||||.+++   +++|.++|++||+++|+||+|+.+..   +. .+   ...+..+++.|+
T Consensus       155 ~~l~~~l~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~g~~---~~-~~---~~~~~d~~~~s~  224 (406)
T 1kmj_A          155 ETLPTLFDEKTRLLAITHVSNVLGTENP---LAEMITLAHQHGAKVLVDGAQAVMHH---PV-DV---QALDCDFYVFSG  224 (406)
T ss_dssp             GGHHHHCCTTEEEEEEESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTS---CC-CH---HHHTCSEEEEEG
T ss_pred             HHHHHHhccCCeEEEEeCCCccccCcCC---HHHHHHHHHHcCCEEEEEchhhcCCC---CC-cc---cccCCCEEEEEc
Confidence            4556655543    88899999999999   89999999999999999999986432   11 11   122356889999


Q ss_pred             ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh----------------------hcCCCCchHHHHHH-HHHhhc
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN----------------------ISSDPATFIQGAVP-QILEKT  134 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~----------------------~~~~~~~~~q~~~~-~~l~~~  134 (246)
                      ||.++++|  +||+++++        ++++.+.....                      +..+.+++.+.++. .+++..
T Consensus       225 ~K~~g~~G--~G~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~  294 (406)
T 1kmj_A          225 HKLYGPTG--IGILYVKE--------ALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYV  294 (406)
T ss_dssp             GGTTSCTT--CEEEEECH--------HHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHH
T ss_pred             hhccCCCC--cEEEEEeH--------HHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHH
Confidence            99998888  89999987        88887754321                      11245666676555 455532


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC--CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCc-
Q 042445          135 EEEFFSKIIDILRETADKCCDRLKEIPCITCPKKP--EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITV-  211 (246)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f-  211 (246)
                      .+.++++.++.++++++.+.+.|++++++.. ..|  .++++.| .++..      +..+ +.+.|.++||.+.||..| 
T Consensus       295 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~~~-~~~~~------~~~~-~~~~l~~~gi~v~~g~~~~  365 (406)
T 1kmj_A          295 SALGLNNIAEYEQNLMHYALSQLESVPDLTL-YGPQNRLGVIAF-NLGKH------HAYD-VGSFLDNYGIAVRTGHHCA  365 (406)
T ss_dssp             HHHCHHHHHHHHHHHHHHHHHHHTTSTTEEE-ESCTTCCSEEEE-EETTC------CHHH-HHHHHHHTTEECEEECTTC
T ss_pred             HHcCHHHHHHHHHHHHHHHHHHHhcCCCeEE-ecCCCcCCEEEE-EECCC------CHHH-HHHHHhhCCcEEEeccccc
Confidence            2346778888999999999999999877763 455  5666555 56421      2444 456778899999998754 


Q ss_pred             -------CCCCeEEEEeec--ChHHHHHHHHHHHHHHHHH
Q 042445          212 -------GLKDWLRITFAV--EPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       212 -------~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~  242 (246)
                             +.++++|++++.  ++++++++++.|.++++.+
T Consensus       366 ~~~~~~~g~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~l  405 (406)
T 1kmj_A          366 MPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHRLL  405 (406)
T ss_dssp             HHHHHHTTCSCEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHhcCCCCeEEEEeecCCCHHHHHHHHHHHHHHHHhh
Confidence                   336899999995  8999999999999988754

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=99.92  E-value=1.1e-24  Score=186.07  Aligned_cols=198  Identities=12%  Similarity=0.112  Sum_probs=144.0

Q ss_pred             cccCCc-CCCcc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCC-ceE
Q 042445           12 FSDFQV-FHVGS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPG-LRL   88 (246)
Q Consensus        12 ~~~~p~-NPtG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g-~r~   88 (246)
                      ++++|+ ||||. +++.+++++|.++|++||+++|+||+|.++.+.+..+ .....+...++   .||||.|++ | +|+
T Consensus       216 vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~~-~~~~~~~~~d~---~t~sK~~~~-G~~ri  290 (419)
T 2eo5_A          216 IFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLF-AIENFNTVPDV---ITLAKALGG-GIMPI  290 (419)
T ss_dssp             EEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-GGGGGTCCCSE---EEECGGGGT-TTSCC
T ss_pred             EEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcchh-hHHhcCCCCCE---EEecccccC-Cccce
Confidence            667775 46896 6788999999999999999999999999887665322 22222222233   379999885 9 999


Q ss_pred             EEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccC
Q 042445           89 GWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKK  168 (246)
Q Consensus        89 G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~  168 (246)
                      ||+++++        +++ .+......+++.|+++|.++.++++.     +++.++.++++++.+.+.|+++  +. .. 
T Consensus       291 G~~~~~~--------~~~-~~~~~~~~t~~~n~~~~~aa~aal~~-----~~~~~~~~~~~~~~l~~~L~~~--~~-~~-  352 (419)
T 2eo5_A          291 GATIFRK--------DLD-FKPGMHSNTFGGNALACAIGSKVIDI-----VKDLLPHVNEIGKIFAEELQGL--AD-DV-  352 (419)
T ss_dssp             EEEEEEG--------GGC-CC------CCCCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHTTS--SS-EE-
T ss_pred             EEEEEch--------Hhh-cCCcccCCCCCCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHh--hh-he-
Confidence            9999998        666 55213334457899999999999974     2227788889999999999876  33 22 


Q ss_pred             CCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHHHHHH
Q 042445          169 PEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       169 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~~~~  242 (246)
                      +..|+|+++++....     .... +...|.++||.+.|+.    ++++||+++  .+++++++++++|.+++++.
T Consensus       353 ~~~g~~~~i~~~~~~-----~~~~-~~~~l~~~Gv~v~~~~----~~~lRis~~~~~t~e~i~~~l~~l~~~l~~~  418 (419)
T 2eo5_A          353 RGIGLAWGLEYNEKK-----VRDR-IIGESFKRGLLLLPAG----RSAIRVIPPLVISEEEAKQGLDILKKVIKVV  418 (419)
T ss_dssp             EEETTEEEEECSCHH-----HHHH-HHHHHHHTTEECEEET----TTEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             EeeeEEEEEEEecCc-----cHHH-HHHHHHHCCCEEecCC----CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence            334778888874210     1233 4455668999999964    689999876  48999999999999998653

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.92  E-value=1.1e-24  Score=184.45  Aligned_cols=208  Identities=17%  Similarity=0.157  Sum_probs=153.0

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhh-HHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSF-VSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGS   76 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~-~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s   76 (246)
                      +.+++.++++    ++++|+||||.+++.++ +++|.++|++||+++|+||+|.++.+.+..+ +....+...++   .|
T Consensus       173 ~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~-~~~~~~~~~d~---~~  248 (392)
T 3ruy_A          173 EALKAAITPNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVF-ACDWDNVTPDM---YI  248 (392)
T ss_dssp             HHHHHHCCTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSS-GGGGGTCCCSE---EE
T ss_pred             HHHHHHhccCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccch-hhhccCCCCCE---EE
Confidence            4455656543    78889999999997665 9999999999999999999999887665433 22222222233   37


Q ss_pred             cccccccCC-ceEEEEEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 042445           77 ISKRGIVPG-LRLGWLVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCC  154 (246)
Q Consensus        77 ~sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~  154 (246)
                      +||.++ +| +|+||+++++        ++++.+... ...++++|++.+.++.++++...  . ++.++.++++++.+.
T Consensus       249 ~SK~l~-gG~~~~G~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~-~~~~~~~~~~~~~l~  316 (392)
T 3ruy_A          249 LGKALG-GGVFPISCAAANR--------DILGVFEPGSHGSTFGGNPLACAVSIAALEVLE--E-EKLTERSLQLGEKLV  316 (392)
T ss_dssp             ECGGGG-TTTSCCEEEEECH--------HHHTTCCTTSSCCSSTTCHHHHHHHHHHHHHHH--H-TTHHHHHHHHHHHHH
T ss_pred             Echhhh-CChhhhEEEEECH--------HHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHH--h-hhHHHHHHHHHHHHH
Confidence            789854 47 9999999988        888777654 33345889999999999998422  1 677888899999999


Q ss_pred             HHhhcCC--CCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHH
Q 042445          155 DRLKEIP--CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEN  230 (246)
Q Consensus       155 ~~L~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~  230 (246)
                      +.|++++  .+. ...+. |.++++.++.       +..++. +.|.++||.+.||.    ++++|+++.  .+++++++
T Consensus       317 ~~L~~~~~~~~~-~~~~~-g~~~~~~~~~-------~~~~l~-~~l~~~gi~v~~~~----~~~iRi~~~~~~~~~~i~~  382 (392)
T 3ruy_A          317 GQLKEIDNPMIT-EVRGK-GLFIGIELNE-------PARPYC-EQLKAAGLLCKETH----ENVIRIAPPLVISEEDLEW  382 (392)
T ss_dssp             HHHTTCCCTTEE-EEEEE-TTEEEEEESS-------CSHHHH-HHHHTTTEECCCBT----TTEEEECCCTTCCHHHHHH
T ss_pred             HHHHHhcCCCce-EEEee-eeEEEEEEcc-------hHHHHH-HHHHHCCcEEecCC----CCEEEEECCCCCCHHHHHH
Confidence            9998862  233 23344 4555555653       144554 45668999999876    789999966  48999999


Q ss_pred             HHHHHHHHH
Q 042445          231 GLGRMKAFY  239 (246)
Q Consensus       231 ~~~~l~~~~  239 (246)
                      ++++|.+++
T Consensus       383 ~~~~l~~~l  391 (392)
T 3ruy_A          383 AFQKIKAVL  391 (392)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998876

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=99.92  E-value=3e-24  Score=185.19  Aligned_cols=213  Identities=17%  Similarity=0.070  Sum_probs=146.5

Q ss_pred             cccCCcCCCc--cCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEE
Q 042445           12 FSDFQVFHVG--SGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLG   89 (246)
Q Consensus        12 ~~~~p~NPtG--~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G   89 (246)
                      +++.|+||+|  ..++.+++++|.++|++||+++|+||+|.++.+.+..+ ....++....   +.||||.+++ |+|+|
T Consensus       231 vi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~-~~~~~~~~pd---i~t~sK~l~~-G~~iG  305 (451)
T 3oks_A          231 VVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMF-ACEHEGIDPD---LIVTAKGIAG-GLPLS  305 (451)
T ss_dssp             EEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS-GGGGGTCCCS---EEEECGGGGT-TSSCE
T ss_pred             EEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccch-hhhhcCCCCC---eeeehhhhhC-CcceE
Confidence            7888888877  45577889999999999999999999999887665422 3333332222   3389999866 89999


Q ss_pred             EEEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHHHHHhhcCCCCcccc
Q 042445           90 WLVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEE-EFFSKIIDILRETADKCCDRLKEIPCITCPK  167 (246)
Q Consensus        90 ~i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~  167 (246)
                      |+++++        ++++.+... ...+++.|+++|+++.++|+...+ .+.++.++.....++.+.+.+++++.+..  
T Consensus       306 ~v~~~~--------~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~--  375 (451)
T 3oks_A          306 AVTGRA--------EIMDSPHVSGLGGTYGGNPIACAAALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIGD--  375 (451)
T ss_dssp             EEEEEH--------HHHTCSCTTSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEE--
T ss_pred             EEEECH--------HHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEE--
Confidence            999988        888877644 334558899999999999984322 33444444444444444444445554432  


Q ss_pred             CCCCceEEEEEecccccc-CCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHH
Q 042445          168 KPEGSMFVMVKLNYSLLE-GINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDR  241 (246)
Q Consensus       168 ~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~  241 (246)
                      .+..|.++++.+...... ........+...+.++||.+.|+..|  .+++|++++.  +++++++++++|.+++++
T Consensus       376 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~--~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  450 (451)
T 3oks_A          376 VRGRGAMIAMELVKAGTTEPDADLTKALCAGAHAAGVIVLSCGTY--GNVVRFLPPLSIGDDLLNEGLDVLEEVLRG  450 (451)
T ss_dssp             EEEETTEEEEEEBSTTSCCBCHHHHHHHHHHHHHTTEECEEECTT--SCEEEECCCTTCCHHHHHHHHHHHHHHHHC
T ss_pred             EEEeeEEEEEEEecCccCCCCHHHHHHHHHHHHhCCcEEecCCCC--CCEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence            233467888777431000 00013444566677899999997654  5789998774  899999999999998864

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=99.92  E-value=1.3e-24  Score=184.13  Aligned_cols=215  Identities=11%  Similarity=0.129  Sum_probs=148.8

Q ss_pred             hhhhhhhccc----cccCCcCCCccC-CChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSG-FSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGS   76 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~-~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s   76 (246)
                      |.+++.++++    +++.++||+|.. ++.+++++|.++|++||+++|+||+|.++...+..+ .....+.   ...+.|
T Consensus       170 ~~l~~~l~~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~-~~~~~~~---~~d~~t  245 (395)
T 3nx3_A          170 SSVEKLVNEKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFF-AYEHAQI---LPDIMT  245 (395)
T ss_dssp             HHHHTTCCTTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-GGGGGTC---CCSEEE
T ss_pred             HHHHHhccCCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcch-hHHhcCC---CCCEEE
Confidence            4455555543    444445666665 778899999999999999999999999886655322 2222221   222457


Q ss_pred             cccccccCCceEEEEEeeCCCCCcchhhH-HHHHHHH-hhhcCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHH
Q 042445           77 ISKRGIVPGLRLGWLVTSDPNGILQDSGI-VDSIKIF-LNISSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADKC  153 (246)
Q Consensus        77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~-~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l  153 (246)
                      +||.+++ |+|+||+++++        ++ ++.+... ...+++.|++++.++.++++... +.+.++.++..+..++.+
T Consensus       246 ~sK~~~~-G~~~G~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l  316 (395)
T 3nx3_A          246 SAKALGC-GLSVGAFVINQ--------KVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSL  316 (395)
T ss_dssp             ECGGGTT-TSCCEEEEECH--------HHHHHHSCTTCCSSCBSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             ecccccC-CCceEEEEEch--------hhhhhhcCCcccCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            8999875 89999999998        87 7777554 23445789999999999887432 234444444444445555


Q ss_pred             HHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHH
Q 042445          154 CDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENG  231 (246)
Q Consensus       154 ~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~  231 (246)
                      .+.+.+++.+..  .+..|.++++.++...      +...+.+.|.++||.+.|+.    ++++|++++.  ++++++++
T Consensus       317 ~~~~~~~~~~~~--~~~~g~~~~~~~~~~~------~~~~~~~~l~~~Gi~v~~~~----~~~iRi~~~~~~t~e~i~~~  384 (395)
T 3nx3_A          317 DELINEFDFCKK--RKGLGFMQGLSLDKSV------KVAKVIQKCQENALLLISCG----ENDLRFLPPLILQKEHIDEM  384 (395)
T ss_dssp             HHHHHHCTTEEE--EEEETTEEEEEECTTS------CHHHHHHHHHHTTEECEEET----TTEEEECCCTTCCHHHHHHH
T ss_pred             HHHHHhCCCeEE--EEeEEEEEEEEeCCcc------hHHHHHHHHHHCCCEEecCC----CCEEEEECCCCCCHHHHHHH
Confidence            555555554432  2345778888886531      33444556778999999875    7899998764  89999999


Q ss_pred             HHHHHHHHHH
Q 042445          232 LGRMKAFYDR  241 (246)
Q Consensus       232 ~~~l~~~~~~  241 (246)
                      +++|++++++
T Consensus       385 l~~l~~~l~~  394 (395)
T 3nx3_A          385 SEKLRKALKS  394 (395)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999998864

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=99.92  E-value=1.1e-23  Score=182.20  Aligned_cols=217  Identities=12%  Similarity=-0.016  Sum_probs=151.7

Q ss_pred             cccCC-cCCCcc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEE
Q 042445           12 FSDFQ-VFHVGS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLG   89 (246)
Q Consensus        12 ~~~~p-~NPtG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G   89 (246)
                      ++.+| +|++|. +++.+++++|.++|++||+++|+||+|.++...+..+ ....++....   +.+|||.++..++|+|
T Consensus       225 ii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~-~~~~~~~~pd---i~t~sK~l~gG~~~lg  300 (460)
T 3gju_A          225 FIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGTMF-GSDHYGIKPD---LITIAKGLTSAYAPLS  300 (460)
T ss_dssp             EEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSC-HHHHHTCCCS---EEEECGGGTTTSSCCE
T ss_pred             EEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccc-hHhhcCCCCC---eeeeehhhcCCCCCeE
Confidence            45555 556665 7788999999999999999999999999887665322 2222222222   3468999755338999


Q ss_pred             EEEeeCCCCCcchhhHHHHHHHH--------hhhcCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhhcC
Q 042445           90 WLVTSDPNGILQDSGIVDSIKIF--------LNISSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADKCCDRLKEI  160 (246)
Q Consensus        90 ~i~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~  160 (246)
                      |+++++        ++++.+...        ...+++.|+++++++.++|+... +.++++.++.....++.+.+.++++
T Consensus       301 ~v~~~~--------~i~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  372 (460)
T 3gju_A          301 GVIVAD--------RVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGGH  372 (460)
T ss_dssp             EEEEEH--------HHHHHHHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             EEEECH--------HHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999998        999988632        22345889999999999998533 3456666666666677777777777


Q ss_pred             CCCccccCCCCceEEEEEeccccc--cCC---CChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHH
Q 042445          161 PCITCPKKPEGSMFVMVKLNYSLL--EGI---NSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLG  233 (246)
Q Consensus       161 ~~~~~~~~~~~g~~~~~~~~~~~~--~~~---~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~  233 (246)
                      +.+.. .. ..|.++++.+....-  ...   ......+.+.+.++||.+.|+.   .++++||++.  .++++++++++
T Consensus       373 ~~~~~-~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---~~~~iRi~~~~~~t~e~i~~~l~  447 (460)
T 3gju_A          373 KNVGE-VR-GDGMLAAVEFVADKDDRVFFDASQKIGPQVATALAASGVIGRAMP---QGDILGFAPPLCLTREQADIVVS  447 (460)
T ss_dssp             TTEEE-EE-EETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEECS---SSCEEEECCCTTCCHHHHHHHHH
T ss_pred             CCeEE-Ee-eeeEEEEEEEccCccccccccchHHHHHHHHHHHHHCCeEEecCC---CCCEEEEECCCCCCHHHHHHHHH
Confidence            65542 33 346677777753210  000   0113445666778899999975   3689999965  49999999999


Q ss_pred             HHHHHHHHHhhc
Q 042445          234 RMKAFYDRHAEK  245 (246)
Q Consensus       234 ~l~~~~~~~~~~  245 (246)
                      +|.+++++..++
T Consensus       448 ~l~~~l~~~~~~  459 (460)
T 3gju_A          448 KTADAVKSVFAN  459 (460)
T ss_dssp             HHHHHHHHHHC-
T ss_pred             HHHHHHHHHHhc
Confidence            999999876543

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=99.91  E-value=7.9e-24  Score=180.25  Aligned_cols=214  Identities=11%  Similarity=0.124  Sum_probs=155.3

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.++++    ++++|+||||.+++   +++|.++|+++|+++|+||+|+.+...   . .+..+   +..+++.|+
T Consensus       160 ~~l~~~l~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~~---~-~~~~~---~~di~~~s~  229 (420)
T 1t3i_A          160 EHFKTLLSEKTKLVTVVHISNTLGCVNP---AEEIAQLAHQAGAKVLVDACQSAPHYP---L-DVQLI---DCDWLVASG  229 (420)
T ss_dssp             HHHHHHCCTTEEEEEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTTTTSC---C-CHHHH---TCSEEEEEG
T ss_pred             HHHHHhhCCCceEEEEeCCcccccCcCC---HHHHHHHHHHcCCEEEEEhhhccCCcc---C-chhhc---CCCEEEEeh
Confidence            3455555543    88899999999999   899999999999999999999864421   1 12222   355889999


Q ss_pred             ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh---------------------hcCCCCchHHHHHHH-HHhhch
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN---------------------ISSDPATFIQGAVPQ-ILEKTE  135 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~---------------------~~~~~~~~~q~~~~~-~l~~~~  135 (246)
                      ||.++++|  +||+++++        ++++.+.....                     +..+.+++.+.++.. +++...
T Consensus       230 sK~~~~~g--~G~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~  299 (420)
T 1t3i_A          230 HKMCAPTG--IGFLYGKE--------EILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLT  299 (420)
T ss_dssp             GGTTSCTT--CEEEEECH--------HHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHH
T ss_pred             hhhcCCCc--eEEEEEch--------HHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHH
Confidence            99988878  99999988        88887765421                     112466677766544 454322


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCC-----CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCC
Q 042445          136 EEFFSKIIDILRETADKCCDRLKEIPCITCPKKPE-----GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGIT  210 (246)
Q Consensus       136 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~  210 (246)
                      +..+++.++.++++++.+.+.|++++++.. ..|.     .+.++++.++..      +..+ +.+.|.++||.+.||..
T Consensus       300 ~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~------~~~~-~~~~l~~~gi~v~~~~~  371 (420)
T 1t3i_A          300 DLGMENIHNYEVELTHYLWQGLGQIPQLRL-YGPNPKHGDRAALASFNVAGL------HASD-VATMVDQDGIAIRSGHH  371 (420)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHHHHTCTTEEE-ESCCGGGSCBCSEEEEEETTB------CHHH-HHHHHHTTTEECBCSCT
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHhCCCeEE-eCCCccccccCCEEEEEECCC------CHHH-HHHHHHHCCeEEeeccc
Confidence            335678888999999999999999877764 3443     244445556531      2334 45678899999999864


Q ss_pred             c--------CCCCeEEEEeec--ChHHHHHHHHHHHHHHHHHh
Q 042445          211 V--------GLKDWLRITFAV--EPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       211 f--------~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~~  243 (246)
                      |        +.++++|++++.  ++++++++++.|.++++++.
T Consensus       372 ~~~~~~~~~g~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~~~  414 (420)
T 1t3i_A          372 CTQPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATIRFFS  414 (420)
T ss_dssp             TCHHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHHTC
T ss_pred             cchHHHHhcCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            4        336899999995  89999999999999987654

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=99.91  E-value=1.3e-23  Score=177.39  Aligned_cols=216  Identities=10%  Similarity=0.053  Sum_probs=157.9

Q ss_pred             hhhhhhhcc-c----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcc
Q 042445            2 ELINQDITR-E----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGS   76 (246)
Q Consensus         2 e~~~~~~~~-~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s   76 (246)
                      |.+++.+++ +    ++++||||||.+++   +++|.++|++||+++|+||+|+.....   . .   ....+..+++.|
T Consensus       138 ~~l~~~i~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~g~~~---~-~---~~~~~~d~~~~s  207 (393)
T 3kgw_A          138 QEVEEGLAQHKPVLLFLVHGESSTGVVQP---LDGFGELCHRYQCLLLVDSVASLGGVP---I-Y---MDQQGIDIMYSS  207 (393)
T ss_dssp             HHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHHHHHHTTCEEEEECTTTTTTSC---C-C---TTTTTCCEEEEE
T ss_pred             HHHHHHHhhCCCcEEEEeccCCcchhhcc---HHHHHHHHHHcCCEEEEECCccccCcc---c-c---hhhcCCCEEEec
Confidence            455666654 3    88999999999998   778899999999999999998743211   1 1   122234578888


Q ss_pred             ccccc-ccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh------------------------hcCCCCchHHHHHHHHH
Q 042445           77 ISKRG-IVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN------------------------ISSDPATFIQGAVPQIL  131 (246)
Q Consensus        77 ~sK~~-~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~------------------------~~~~~~~~~q~~~~~~l  131 (246)
                      +||.+ +.+|  +||+++++        ++++.+.....                        ..++.+...+.++..++
T Consensus       208 ~sK~~~~~~g--~g~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al  277 (393)
T 3kgw_A          208 SQKVLNAPPG--ISLISFND--------KAKYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESL  277 (393)
T ss_dssp             SSSTTCCCSS--CEEEEECH--------HHHHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHH
T ss_pred             CcccccCCCc--eeEEEECH--------HHHHHHhccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHH
Confidence            99965 3444  89999988        88888765321                        01245777777777777


Q ss_pred             hhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCC----CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEec
Q 042445          132 EKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPE----GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLP  207 (246)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p  207 (246)
                      ....+..+++.++.++++++.+.+.|+++ ++.. ..+.    .++++++.++...     +..++...+++++||.+.+
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~gi~v~~  350 (393)
T 3kgw_A          278 ALIAEQGLENCWRRHREATAHLHKHLQEM-GLKF-FVKDPEIRLPTITTVTVPAGY-----NWRDIVSYVLDHFSIEISG  350 (393)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCB-SSSSGGGBCSSEEEEECCTTB-----CHHHHHHHHHHHHCEECBC
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCee-ccCChhhcCCeEEEEeCCCCC-----CHHHHHHHHHHhCCEEEeC
Confidence            74344558889999999999999999988 6663 2232    3577777775432     3555655555555999999


Q ss_pred             CCCcCCCCeEEEEe-ec--ChHHHHHHHHHHHHHHHHHhh
Q 042445          208 GITVGLKDWLRITF-AV--EPSALENGLGRMKAFYDRHAE  244 (246)
Q Consensus       208 g~~f~~~~~iRls~-~~--~~~~l~~~~~~l~~~~~~~~~  244 (246)
                      |..+..++++|+++ +.  +++++++++++|.+++++..+
T Consensus       351 g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~~  390 (393)
T 3kgw_A          351 GLGPTEERVLRIGLLGYNATTENVDRVAEALREALQHCPK  390 (393)
T ss_dssp             CCGGGTTTEEEEECCGGGCCHHHHHHHHHHHHHHHHHSCB
T ss_pred             CcccCCCCEEEEEecccCCCHHHHHHHHHHHHHHHHhhhh
Confidence            98776689999998 63  899999999999999987654

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=99.91  E-value=4e-24  Score=183.68  Aligned_cols=214  Identities=16%  Similarity=0.118  Sum_probs=140.7

Q ss_pred             cccCCcCCCccCCC-hhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSGFS-GSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~-~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      +++.++||+|.+.+ .+++++|.++|++||+++|+||+|.++...+... .....+...+++   ||||.++ +|+|+||
T Consensus       206 i~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~-~~~~~~~~~di~---s~sK~~~-~G~riG~  280 (439)
T 3dxv_A          206 FIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLH-CFEHEGFVPDIL---VLGKGLG-GGLPLSA  280 (439)
T ss_dssp             EECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSS-GGGGTTCCCSEE---EECGGGG-TTSCCEE
T ss_pred             EEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhh-HHHhcCCCCCEE---EEcchhc-CCcceEE
Confidence            55555677777655 4559999999999999999999999876555322 222232222333   8999998 5999999


Q ss_pred             EEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHHHHHhhcCCCCccccC
Q 042445           91 LVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEE-EFFSKIIDILRETADKCCDRLKEIPCITCPKK  168 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~  168 (246)
                      +++++        ++++.+... ...++ .+++++.++.++++...+ ...++.++..+..++.+.+.+.+++.+..  .
T Consensus       281 ~~~~~--------~~~~~~~~~~~~~t~-~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~  349 (439)
T 3dxv_A          281 VIAPA--------EILDCASAFAMQTLH-GNPISAAAGLAVLETIDRDDLPAMAERKGRLLRDGLSELAKRHPLIGD--I  349 (439)
T ss_dssp             EEEEH--------HHHTSCSSSSCCTTT-TCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEE--E
T ss_pred             EEECH--------HHHhhhcCCCcCCCc-ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEE--E
Confidence            99998        888877654 23455 899999999988874322 22333333333333333333334554432  3


Q ss_pred             CCCceEEEEEeccccccC--CCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHHh
Q 042445          169 PEGSMFVMVKLNYSLLEG--INSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       169 ~~~g~~~~~~~~~~~~~~--~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~~  243 (246)
                      +..|.|+++.+.......  .......+.+.+.++||.+.|+..+  ++++|++++.  +++++++++++|.+++++..
T Consensus       350 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~--~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~  426 (439)
T 3dxv_A          350 RGRGLACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYYVGMN--GNVLEFTPPLTITETDIHKALDLLDRAFSELS  426 (439)
T ss_dssp             EEETTEEEEEEEEETTTTEECHHHHHHHHHHHHHHTEECEEESTT--SCEEEECCCTTCCHHHHHHHHHHHHHHHHTGG
T ss_pred             EEEEEEEEEEEecCccccCCCHHHHHHHHHHHHHCCcEEeecCCC--CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            345777777773210000  0012334455566789999997533  5899998763  89999999999999998763

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=99.91  E-value=3.8e-24  Score=178.80  Aligned_cols=205  Identities=10%  Similarity=0.020  Sum_probs=142.8

Q ss_pred             cccCCcCCC-ccCCChhhHHHHHHHHHHcCCEEEEccccCCc--ccCCCCCccccccCCcccEEEEcccccccccCCceE
Q 042445           12 FSDFQVFHV-GSGFSGSFVSPIAETAKKLGIMVIANEVYGHL--AFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRL   88 (246)
Q Consensus        12 ~~~~p~NPt-G~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~--~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~   88 (246)
                      ++++||||| |.+++.+++++|+++|++||+++|+||+|...  .+.+.....+.  ...+  +++.|+||.|++++.  
T Consensus       140 ~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~--~~~d--~~~~s~sK~~~~~~g--  213 (357)
T 3lws_A          140 LLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIA--GLFD--SIYISFYKGLGGIAG--  213 (357)
T ss_dssp             EEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHH--TTSS--EEEEESSSTTCCSSC--
T ss_pred             EEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHH--hcCC--EEEEeccccCCCCce--
Confidence            889999998 99999999999999999999999999998722  11121211111  1122  347899999844432  


Q ss_pred             EEEEeeCCCCCcchhhHHHHHHHHhhh-cCCC--CchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCcc
Q 042445           89 GWLVTSDPNGILQDSGIVDSIKIFLNI-SSDP--ATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITC  165 (246)
Q Consensus        89 G~i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~--~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~  165 (246)
                      ||+++++        ++++.+...... ..+.  +...+.++...+.    .+.++.+ .+.++++.+.+.|++++++..
T Consensus       214 g~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~-~~~~~~~~l~~~L~~~~g~~~  280 (357)
T 3lws_A          214 AILAGPA--------AFCQTARIWKRRYGGDLISLYPYIVSADYYYE----LRKDRMG-QYYEQAKQLAEQFNALPGVHT  280 (357)
T ss_dssp             EEEEECH--------HHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHH----HHTTCHH-HHHHHHHHHHHHHHTSTTEEE
T ss_pred             EEEEcCH--------HHHHHHHHHHHHhcCCcccchHHHHHHHHHHH----HHHHHHH-HHHHHHHHHHHHHHhCCCCee
Confidence            9999988        888888765432 2222  2233333333443    2333333 357788899999999888874


Q ss_pred             ccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC-CCeEEEEee-----cChHHHHHHHHHHHHHH
Q 042445          166 PKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-KDWLRITFA-----VEPSALENGLGRMKAFY  239 (246)
Q Consensus       166 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~iRls~~-----~~~~~l~~~~~~l~~~~  239 (246)
                      ...|.+++|+|++++....    .+.+.+.+.|.++||.+.||..|.. .+++|++++     .+.+++++++++|.+++
T Consensus       281 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~Gi~v~~g~~~~~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al  356 (357)
T 3lws_A          281 TPEVPVSNMFHLHFDGQAA----DISPKLEQVQEETGLGFVGYLVDKDGYCSTEISVGDAYGELDQQTRDAGFARLRQAF  356 (357)
T ss_dssp             ESSSCSSSEEEEEEESCHH----HHHHHHHHHHHHHCEESCSCCEECSSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred             ccCCCcceEEEEEecCChH----HHHHHHHHHHHhcCeEEecccccCCCceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence            3467789999998875310    1245567778899999999976653 348999987     37789999999998765

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=99.91  E-value=3.2e-24  Score=185.01  Aligned_cols=214  Identities=14%  Similarity=0.123  Sum_probs=144.4

Q ss_pred             cccCC-cCCCccCC-ChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCC-ceE
Q 042445           12 FSDFQ-VFHVGSGF-SGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPG-LRL   88 (246)
Q Consensus        12 ~~~~p-~NPtG~~~-~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g-~r~   88 (246)
                      +++.+ +| ||.++ +++++++|.++|++||+++|+||+|.++.+.+..+ .....+-...   +.||||.+++ | +|+
T Consensus       220 i~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~-~~~~~~~~~d---i~t~sK~l~~-G~~~i  293 (452)
T 3n5m_A          220 IMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGKAF-GFMNYDVKPD---IITMAKGITS-AYLPL  293 (452)
T ss_dssp             EECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-GGGGTTCCCS---EEEECGGGGT-TSSCC
T ss_pred             EEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccccc-hhhhcCCCCC---EEeecccccC-CCcce
Confidence            44444 69 99766 88889999999999999999999999987665432 2222222222   3468999876 9 999


Q ss_pred             EEEEeeCCCCCcchhhHHHHHHH----H---hhhcCCCCchHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHHHHHhhcC
Q 042445           89 GWLVTSDPNGILQDSGIVDSIKI----F---LNISSDPATFIQGAVPQILEKTEE-EFFSKIIDILRETADKCCDRLKEI  160 (246)
Q Consensus        89 G~i~~~~~~~~~~~~~~~~~l~~----~---~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~  160 (246)
                      ||+++++        ++++.+..    .   ...+++.|+++++++.++|+...+ ..+++.++.....++.+.+.++++
T Consensus       294 g~~~~~~--------~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~  365 (452)
T 3n5m_A          294 SATAVKR--------EIYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEIIENENLIERSAQMGSLLLEQLKEEIGEH  365 (452)
T ss_dssp             EEEEEEH--------HHHGGGCSSSTTCSCCCCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEEECH--------HHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999998        88888743    1   223457899999999999884322 334444444444444444444555


Q ss_pred             CCCccccCCCCceEEEEEeccccccC--C-CChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEee--cChHHHHHHHH
Q 042445          161 PCITCPKKPEGSMFVMVKLNYSLLEG--I-NSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFA--VEPSALENGLG  233 (246)
Q Consensus       161 ~~~~~~~~~~~g~~~~~~~~~~~~~~--~-~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~--~~~~~l~~~~~  233 (246)
                      +.+.. .. ..|.++++.+.......  . ......+.+.+.++||.+.|+..|..  ++++||+++  .++++++++++
T Consensus       366 ~~~~~-~~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~  443 (452)
T 3n5m_A          366 PLVGD-IR-GKGLLVGIELVNDKETKEPIDNDKIASVVNACKEKGLIIGRNGMTTAGYNNILTLAPPLVISSEEIAFVIG  443 (452)
T ss_dssp             TTEEE-EE-ESSSCEEEEEEEETTTTEECCHHHHHHHHHHHHHTTEECEECTTSSTTCCCEEEECCCTTCCHHHHHHHHH
T ss_pred             CCeEE-EE-EEEEEEEEEEecCCcccCCCCHHHHHHHHHHHHHCCcEEeecCcccCCCCCEEEEECCCCCCHHHHHHHHH
Confidence            54442 33 44566666664321000  0 00123455667789999999886643  689999866  49999999999


Q ss_pred             HHHHHHHH
Q 042445          234 RMKAFYDR  241 (246)
Q Consensus       234 ~l~~~~~~  241 (246)
                      +|.+++++
T Consensus       444 ~l~~~l~~  451 (452)
T 3n5m_A          444 TLKTAMER  451 (452)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHHh
Confidence            99998754

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=99.91  E-value=7.8e-24  Score=178.14  Aligned_cols=214  Identities=14%  Similarity=0.031  Sum_probs=149.7

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcC--CEEEEccccCCcccCCCCCccccccCCcccEEEEc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLG--IMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLG   75 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~--~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~   75 (246)
                      |.+++.++++    ++++|+||||.+++   +++|.++|+++|  +++|+||+|+.   +..+. .+.   ..+..+++.
T Consensus       130 ~~l~~~i~~~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~~li~Dea~~~---~~~~~-~~~---~~~~di~~~  199 (384)
T 1eg5_A          130 EELEKLVDEDTFLVSIMAANNEVGTIQP---VEDVTRIVKKKNKETLVHVDAVQTI---GKIPF-SLE---KLEVDYASF  199 (384)
T ss_dssp             HHHHHHCCTTEEEEEEESBCTTTCBBCC---HHHHHHHHHHHCTTCEEEEECTTTT---TTSCC-CCT---TTCCSEEEE
T ss_pred             HHHHHHhCCCCeEEEEECCCCCcccccC---HHHHHHHHHhcCCceEEEEEhhhhc---CCccc-Cch---hcCCCEEEe
Confidence            4455555543    78899999999999   788999999999  99999999982   21111 222   223568899


Q ss_pred             ccccccccCCceEEEEEeeCCCCCcchhhH--HHHHHHH----hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 042445           76 SISKRGIVPGLRLGWLVTSDPNGILQDSGI--VDSIKIF----LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRET  149 (246)
Q Consensus        76 s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~--~~~l~~~----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~  149 (246)
                      |+||.++.+|  +||+++++        ++  ...+...    ....++++.+.+.++..+++. ...++++.++.++++
T Consensus       200 s~sK~~g~~G--~G~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~-~~~~~~~~~~~~~~~  268 (384)
T 1eg5_A          200 SAHKFHGPKG--VGITYIRK--------GVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEI-AVEELSEAAKHMEKL  268 (384)
T ss_dssp             EGGGGTSCTT--CEEEEECT--------TSCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHH-HHHTHHHHHHHHHHH
T ss_pred             cHHHhcCCCc--eEEEEEcC--------CCccccccccCcccccccCCCCChHHHHHHHHHHHH-HHHhHHHHHHHHHHH
Confidence            9999988888  79999987        32  1111110    112336789999998888885 245788899999999


Q ss_pred             HHHHHHHhhcCCCCccccCCCC--ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--------------
Q 042445          150 ADKCCDRLKEIPCITCPKKPEG--SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--------------  213 (246)
Q Consensus       150 ~~~l~~~L~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--------------  213 (246)
                      ++.+.+.|++ +++..+.++.+  +.++++.++..      +..++ .+.|.++||.+.||..|+.              
T Consensus       269 ~~~l~~~L~~-~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~  340 (384)
T 1eg5_A          269 RSKLVSGLMN-LGAHIITPLEISLPNTLSVSFPNI------RGSTL-QNLLSGYGIYVSTSSACTSKDERLRHVLDAMGV  340 (384)
T ss_dssp             HHHHHHHHHT-TTCEECSCTTSBCTTEEEEECTTC------CHHHH-HHHHHHTTEECBC------------CHHHHTTC
T ss_pred             HHHHHHHhCC-CCeEEeCCcccCCCCEEEEEeCCC------CHHHH-HHHHhhCCeEEeccccccCCCCcchHHHHHcCC
Confidence            9999999988 47764333332  34566555421      24444 5566789999999887642              


Q ss_pred             -----CCeEEEEee--cChHHHHHHHHHHHHHHHHHhh
Q 042445          214 -----KDWLRITFA--VEPSALENGLGRMKAFYDRHAE  244 (246)
Q Consensus       214 -----~~~iRls~~--~~~~~l~~~~~~l~~~~~~~~~  244 (246)
                           .+++|++++  .+++++++++++|+++++++++
T Consensus       341 ~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~  378 (384)
T 1eg5_A          341 DRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILSFLDL  378 (384)
T ss_dssp             CHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHHHC--
T ss_pred             ChhhcCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence                 379999999  4899999999999999987643

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=99.91  E-value=1.2e-23  Score=175.05  Aligned_cols=212  Identities=16%  Similarity=0.040  Sum_probs=151.3

Q ss_pred             hhhhhhhcc-c----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcc
Q 042445            2 ELINQDITR-E----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGS   76 (246)
Q Consensus         2 e~~~~~~~~-~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s   76 (246)
                      |.+++.+++ +    ++++|+||||.+++   +++|.++|++||+++|+||+|+....   + ..+..+   +..+++.|
T Consensus       114 ~~l~~~l~~~~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~li~D~a~~~~~~---~-~~~~~~---~~d~~~~s  183 (353)
T 2yrr_A          114 EAVARALKRRRYRMVALVHGETSTGVLNP---AEAIGALAKEAGALFFLDAVTTLGML---P-FSMRAM---GVDYAFTG  183 (353)
T ss_dssp             HHHHHHHHHSCCSEEEEESEETTTTEECC---HHHHHHHHHHHTCEEEEECTTTTTTS---C-CCHHHH---TCSEEECC
T ss_pred             HHHHHHHHhCCCCEEEEEccCCCcceecC---HHHHHHHHHHcCCeEEEEcCcccccc---c-cccccc---CceEEEec
Confidence            445555544 3    88899999999998   77999999999999999999963221   1 122222   23478889


Q ss_pred             ccccc-ccCCceEEEEEeeCCCCCcchhhHHHHHHH----------------HhhhcCCCCchHHHHHHHHHhhchHHHH
Q 042445           77 ISKRG-IVPGLRLGWLVTSDPNGILQDSGIVDSIKI----------------FLNISSDPATFIQGAVPQILEKTEEEFF  139 (246)
Q Consensus        77 ~sK~~-~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~----------------~~~~~~~~~~~~q~~~~~~l~~~~~~~~  139 (246)
                      ++|.+ +.+|  +||+++++        ++++.++.                ......+.+...+.++..++....+..+
T Consensus       184 ~~K~~~~~~g--~G~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~  253 (353)
T 2yrr_A          184 SQKCLSAPPG--LAPIAASL--------EARKAFTGKRGWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGV  253 (353)
T ss_dssp             TTSTTCCCSS--CEEEEECH--------HHHHHCCCCSCSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCH
T ss_pred             CcccccCCCc--eEEEEECH--------HHHHHhccCCCccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhH
Confidence            99954 4466  69999998        77766541                0111225677777777777764223347


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCccccCCC--CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeE
Q 042445          140 SKIIDILRETADKCCDRLKEIPCITCPKKPE--GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWL  217 (246)
Q Consensus       140 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~i  217 (246)
                      ++.++.++++++.+.+.|+++ ++.. ..+.  +++++|++++...     +..+ +.+.|.++||.+.||..|..++++
T Consensus       254 ~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~l~~~gi~v~~g~~~~~~~~i  325 (353)
T 2yrr_A          254 AARERRAREVYAWVLEELKAR-GFRP-YPKASPLPTVLVVRPPEGV-----DADR-LVRALYAEGVAVAGGIGPTRGQVL  325 (353)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT-TCEE-SCSSSBCTTEEEEECCTTC-----CHHH-HHHHHHHTTEECEECCGGGTTTCE
T ss_pred             HHHHHHHHHHHHHHHHHHHHC-CCcc-ccCccCCCeEEEEECCCCC-----CHHH-HHHHHHHCCEEEeCCccccCCCeE
Confidence            788899999999999999887 7764 3343  5677788775321     2444 455566779999999887778999


Q ss_pred             EEEee--cChHHHH-HHHHHHHHHHHH
Q 042445          218 RITFA--VEPSALE-NGLGRMKAFYDR  241 (246)
Q Consensus       218 Rls~~--~~~~~l~-~~~~~l~~~~~~  241 (246)
                      |+++.  .++++++ +++++|.++++.
T Consensus       326 Ri~~~~~~~~~~~~~~~~~~l~~~l~~  352 (353)
T 2yrr_A          326 RLGLMGEGARREAYQAFLKALDRALAL  352 (353)
T ss_dssp             EEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred             EEecCccCCHHHHHHHHHHHHHHHHhh
Confidence            99994  3778888 999999988753

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=99.91  E-value=4.4e-24  Score=182.55  Aligned_cols=215  Identities=12%  Similarity=0.168  Sum_probs=150.9

Q ss_pred             hhhhhhhccc----cccCCcCCCcc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcc
Q 042445            2 ELINQDITRE----FSDFQVFHVGS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGS   76 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s   76 (246)
                      |.+++.++++    +++.++||+|. +++.+++++|.++|++||+++|+||+|.++.+.+..+ .....+...+++   |
T Consensus       192 ~~le~~i~~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~-~~~~~~~~~dii---t  267 (420)
T 2pb2_A          192 HAVKAVMDDHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLF-AYMHYGVTPDIL---T  267 (420)
T ss_dssp             HHHHHHCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS-HHHHHTCCCSEE---E
T ss_pred             HHHHHHhccCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHH-HHHhcCCCCCeE---E
Confidence            4455555543    66666777784 6999999999999999999999999999877665432 222222222333   7


Q ss_pred             cccccccCCceEEEEEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445           77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD  155 (246)
Q Consensus        77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  155 (246)
                      |||.++ +|+|+||+++++        ++++.+... ...+++.|++++.++.++|+...+   ++..+.++++++.+.+
T Consensus       268 ~sK~l~-~G~~iG~~~~~~--------~l~~~l~~~~~~~t~~~~~~~~aa~~a~L~~~~~---~~~~~~~~~~~~~l~~  335 (420)
T 2pb2_A          268 SAKALG-GGFPVSAMLTTQ--------EIASAFHVGSHGSTYGGNPLACAVAGAAFDIINT---PEVLQGIHTKRQQFVQ  335 (420)
T ss_dssp             ECGGGG-TTSCCEEEEECH--------HHHTTCC----CCEECCCHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHH
T ss_pred             eccccc-CCCceEEEEEhH--------HHHHhhcCCCcCcccCcCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHH
Confidence            899987 899999999988        777766542 233447899999999888874322   3456667777777777


Q ss_pred             HhhcC----CCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHH
Q 042445          156 RLKEI----PCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALE  229 (246)
Q Consensus       156 ~L~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~  229 (246)
                      .|+++    +.+. ...+ .|.+++++++...  + .+..++ .+.|.++||.+.|+.    ++++|+++.  .++++++
T Consensus       336 ~L~~~~~~~~~~~-~~~~-~g~~~~v~~~~~~--~-~~~~~l-~~~l~~~Gi~v~~~~----~~~iRl~~~~~~t~eei~  405 (420)
T 2pb2_A          336 HLQAIDEQFDIFS-DIRG-MGLLIGAELKPKY--K-GRARDF-LYAGAEAGVMVLNAG----ADVMRFAPSLVVEEADIH  405 (420)
T ss_dssp             HHHHHHHHHCCEE-EEEE-ETTEEEEEECGGG--T-TCHHHH-HHHHHHTTEECEESS----TTEEEECCCTTCCHHHHH
T ss_pred             HHHHHHhcCCCeE-EEEe-cceEEEEEECCCc--h-HHHHHH-HHHHHHCCCEEEeCC----CCEEEEECCCCCCHHHHH
Confidence            77653    3332 1233 4677888886421  0 013444 555667999999975    689999976  4899999


Q ss_pred             HHHHHHHHHHHHH
Q 042445          230 NGLGRMKAFYDRH  242 (246)
Q Consensus       230 ~~~~~l~~~~~~~  242 (246)
                      +++++|.+++++.
T Consensus       406 ~~~~~l~~~l~~~  418 (420)
T 2pb2_A          406 EGMQRFAQAVGKV  418 (420)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998765

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=99.91  E-value=2.3e-23  Score=176.07  Aligned_cols=216  Identities=13%  Similarity=0.049  Sum_probs=155.3

Q ss_pred             hhhhhhhcc-c----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcc
Q 042445            2 ELINQDITR-E----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGS   76 (246)
Q Consensus         2 e~~~~~~~~-~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s   76 (246)
                      +.+++.+++ +    ++++|+||||.+++   +++|.++|+++|+++|+||++.....   +. .   +...+..+++.|
T Consensus       134 ~~l~~~i~~~~~~~v~~~~~~nptG~~~~---l~~i~~~~~~~~~~li~D~a~~~~~~---~~-~---~~~~~~d~~~~s  203 (393)
T 2huf_A          134 DEIRDALLIHKPSVLFLTQGDSSTGVLQG---LEGVGALCHQHNCLLIVDTVASLGGA---PM-F---MDRWEIDAMYTG  203 (393)
T ss_dssp             HHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHHHHHHTTCEEEEECTTTBTTB---CC-C---TTTTTCSEEECC
T ss_pred             HHHHHHHhccCCcEEEEEccCCCccccCC---HHHHHHHHHHcCCEEEEEcccccCCC---Cc-c---hhhcCccEEEEC
Confidence            345555544 3    88899999999998   77899999999999999999864221   11 1   222235688999


Q ss_pred             cccc-cccCCceEEEEEeeCCCCCcchhhHHHHHHHHh----h-------------------hc-CCCCchHHHHHHHHH
Q 042445           77 ISKR-GIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFL----N-------------------IS-SDPATFIQGAVPQIL  131 (246)
Q Consensus        77 ~sK~-~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~----~-------------------~~-~~~~~~~q~~~~~~l  131 (246)
                      +||. ++++|+  ||+++++        ++++.+....    .                   .. .+.+...+.++..++
T Consensus       204 ~sK~l~g~~G~--G~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al  273 (393)
T 2huf_A          204 SQKVLGAPPGI--TPVSFSH--------RAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAI  273 (393)
T ss_dssp             SSSTTCCCSSC--EEEEECH--------HHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHH
T ss_pred             CCcccccCCCe--EEEEECH--------HHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHH
Confidence            9996 556886  9999987        8888876530    1                   01 134556666666677


Q ss_pred             hhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCC---CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecC
Q 042445          132 EKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPE---GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPG  208 (246)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg  208 (246)
                      +...+..+++.++.++++++.+.+.|+++ ++.. ..|.   ++++++++++...     +..++...+++++||.+.+|
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~L~~~~gi~v~~g  346 (393)
T 2huf_A          274 AMACEEGLPALIARHEDCAKRLYRGLQDA-GFEL-YADPKDRLSTVTTIKVPQGV-----DWLKAAQYAMKTYLVEISGG  346 (393)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCB-SSCGGGBCTTEEEEECCTTC-----CHHHHHHHHHHHHCEECBCC
T ss_pred             HHHHHhCHHHHHHHHHHHHHHHHHHHHHc-CCee-ccCccccCCcEEEEEcCCCC-----CHHHHHHHHHHhCCEEEecC
Confidence            64223347788889999999999999987 6663 3442   3567777775321     35555555555679999999


Q ss_pred             CCcCCCCeEEEEe-ec--ChHHHHHHHHHHHHHHHHHhh
Q 042445          209 ITVGLKDWLRITF-AV--EPSALENGLGRMKAFYDRHAE  244 (246)
Q Consensus       209 ~~f~~~~~iRls~-~~--~~~~l~~~~~~l~~~~~~~~~  244 (246)
                      ..|..++++|+++ +.  +++++++++++|.+++++...
T Consensus       347 ~~~~~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~~~~~  385 (393)
T 2huf_A          347 LGPTAGQVFRIGLMGQNATTERVDRVLQVFQEAVAAVKP  385 (393)
T ss_dssp             CGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHCC
T ss_pred             cccccCCEEEEEcccCcCCHHHHHHHHHHHHHHHHHcCC
Confidence            8876689999999 53  688899999999999987653

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=99.91  E-value=1.4e-23  Score=181.39  Aligned_cols=214  Identities=11%  Similarity=0.085  Sum_probs=146.3

Q ss_pred             cccCCcCCCc--cCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEE
Q 042445           12 FSDFQVFHVG--SGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLG   89 (246)
Q Consensus        12 ~~~~p~NPtG--~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G   89 (246)
                      ++.+|+||+|  .+++.+++++|.++|++||+++|+||+|.++...+..+ .....+...+   +.+|||.++.+|+|+|
T Consensus       223 vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G~~~-~~~~~~~~pd---i~t~sK~l~gg~~~lg  298 (459)
T 4a6r_A          223 FVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGEWF-GHQHFGFQPD---LFTAAKGLSSGYLPIG  298 (459)
T ss_dssp             EEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS-HHHHHTCCCS---EEEECGGGGTTSSCCE
T ss_pred             EEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccc-hHhhcCCCCC---eeehhhhhcCCCCCcc
Confidence            6666655554  46689999999999999999999999999987666432 2222222222   3368999877669999


Q ss_pred             EEEeeCCCCCcchhhHHHHHHH---H-hhhcCCCCchHHHHHHHHHhhch-HHHHHHHH-HHHHHHHHHHHHHhhcCCCC
Q 042445           90 WLVTSDPNGILQDSGIVDSIKI---F-LNISSDPATFIQGAVPQILEKTE-EEFFSKII-DILRETADKCCDRLKEIPCI  163 (246)
Q Consensus        90 ~i~~~~~~~~~~~~~~~~~l~~---~-~~~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~-~~~~~~~~~l~~~L~~~~~~  163 (246)
                      |+++++        ++++.+..   . ...+++.|+++++++.++|+... +..+++.+ +.....++.+.+.|++++.+
T Consensus       299 ~v~~~~--------~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  370 (459)
T 4a6r_A          299 AVFVGK--------RVAEGLIAGGDFNHGFTYSGHPVCAAVAHANVAALRDEGIVQRVKDDIGPYMQKRWRETFSRFEHV  370 (459)
T ss_dssp             EEEECH--------HHHHHHHHHCTTHHHHHHCSCHHHHHHHHHHHHHHHHTCHHHHHHHTHHHHHHHHHHHHHTTCTTE
T ss_pred             ceeeCH--------HHHHHhhcCCCcccCCCCCCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence            999998        99988872   2 33345889999999999998533 23444444 44444445554556556555


Q ss_pred             ccccCCCCceEEEEEeccccc--cC---CCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHH
Q 042445          164 TCPKKPEGSMFVMVKLNYSLL--EG---INSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMK  236 (246)
Q Consensus       164 ~~~~~~~~g~~~~~~~~~~~~--~~---~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~  236 (246)
                      .. ..+ .|.|+++++.....  ..   .......+.+.+.++||.++|+.     +++||++.  .+++++++++++|.
T Consensus       371 ~~-~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g-----~~iRi~~~~~~t~e~i~~~l~~l~  443 (459)
T 4a6r_A          371 DD-VRG-VGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRNNLIMRACG-----DHIVSAPPLVMTRAEVDEMLAVAE  443 (459)
T ss_dssp             EE-EEE-ETTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHHTTEECEEET-----TEEEECCCTTCCHHHHHHHHHHHH
T ss_pred             EE-EEE-EEEEEEEEEecCccccccccchHHHHHHHHHHHHHCCeEEecCC-----CEEEEECCCCCCHHHHHHHHHHHH
Confidence            42 333 46677776753210  00   00013445566778899999963     89999965  49999999999999


Q ss_pred             HHHHHHhh
Q 042445          237 AFYDRHAE  244 (246)
Q Consensus       237 ~~~~~~~~  244 (246)
                      +++++..+
T Consensus       444 ~~l~~~~~  451 (459)
T 4a6r_A          444 RCLEEFEQ  451 (459)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99987653

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=99.91  E-value=1.1e-23  Score=180.37  Aligned_cols=203  Identities=12%  Similarity=0.062  Sum_probs=145.3

Q ss_pred             cccCC--cCCCcc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCC-ce
Q 042445           12 FSDFQ--VFHVGS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPG-LR   87 (246)
Q Consensus        12 ~~~~p--~NPtG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g-~r   87 (246)
                      ++++|  |||||. +++.+++++|.++|++||+++|+||+|.++...+..+ .....+...++   .|+||.++ +| +|
T Consensus       208 vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~~-~~~~~~~~~d~---~t~sK~l~-~G~~~  282 (429)
T 1s0a_A          208 VIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLF-ACEHAEIAPDI---LCLGKALT-GGTMT  282 (429)
T ss_dssp             EEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-GGGGGTCCCSE---EEECGGGG-TSSSC
T ss_pred             EEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchHH-HhhhcCCCCCE---EEeccccc-CCCcc
Confidence            66777  489995 6678899999999999999999999999876554322 22222222233   37899987 58 99


Q ss_pred             EEEEEeeCCCCCcchhhHHHHHHHH------hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcC-
Q 042445           88 LGWLVTSDPNGILQDSGIVDSIKIF------LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEI-  160 (246)
Q Consensus        88 ~G~i~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-  160 (246)
                      +||+++++        ++++.+...      ...++++|++++.++.++++...+   +...+.++++++.+.+.|+++ 
T Consensus       283 iG~~~~~~--------~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~~~~---~~~~~~~~~~~~~l~~~L~~l~  351 (429)
T 1s0a_A          283 LSATLTTR--------EVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILES---GDWQQQVADIEVQLREQLAPAR  351 (429)
T ss_dssp             CEEEEECH--------HHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHGGGG
T ss_pred             ceEEEeCH--------HHHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHh
Confidence            99999988        888888753      223447799999999888874221   234566677788888888764 


Q ss_pred             --CCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHH
Q 042445          161 --PCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMK  236 (246)
Q Consensus       161 --~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~  236 (246)
                        +++. ...+ .|.++|++++...     +..++ ...|.++||.+.|+     .+++|++++  .+++++++++++|+
T Consensus       352 ~~~~~~-~~~~-~g~~~~~~~~~~~-----~~~~l-~~~l~~~Gi~v~~~-----~~~iRis~~~~~t~e~i~~~~~~l~  418 (429)
T 1s0a_A          352 DAEMVA-DVRV-LGAIGVVETTHPV-----NMAAL-QKFFVEQGVWIRPF-----GKLIYLMPPYIILPQQLQRLTAAVN  418 (429)
T ss_dssp             GCTTEE-EEEE-ETTEEEEEESSCB-----CHHHH-HHHHHHTTEECCCB-----TTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred             cCCCEE-EEEE-eeEEEEEEECCcc-----cHHHH-HHHHHHCCCEEecc-----CCEEEEECCCCCCHHHHHHHHHHHH
Confidence              4443 1233 3678888886421     24444 44555889999883     378999976  48999999999999


Q ss_pred             HHHHHHh
Q 042445          237 AFYDRHA  243 (246)
Q Consensus       237 ~~~~~~~  243 (246)
                      +++++..
T Consensus       419 ~~~~~~~  425 (429)
T 1s0a_A          419 RAVQDET  425 (429)
T ss_dssp             HHTSSGG
T ss_pred             HHHHhhh
Confidence            9876543

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=99.91  E-value=2.2e-23  Score=174.22  Aligned_cols=202  Identities=10%  Similarity=0.047  Sum_probs=148.2

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      ++++|+||||.+++   +++|.++|++||+++|+||+|+.+...   . .+   ...+..+++.|+||.++++ .++||+
T Consensus       136 ~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~~---~-~~---~~~~~di~~~s~~K~~~~~-~g~G~~  204 (366)
T 1m32_A          136 AMVHSETTTGMLNP---IDEVGALAHRYGKTYIVDAMSSFGGIP---M-DI---AALHIDYLISSANKCIQGV-PGFAFV  204 (366)
T ss_dssp             EEESEETTTTEECC---HHHHHHHHHHHTCEEEEECTTTTTTSC---C-CT---TTTTCSEEEEESSSTTCCC-SSEEEE
T ss_pred             EEecccCCcceecC---HHHHHHHHHHcCCEEEEECCccccCcC---c-cc---cccCccEEEecCcccccCC-CceEEE
Confidence            68899999999998   789999999999999999999854321   1 11   2223458899999975332 347999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHh------------------hh-cCCCCchHHHHHHHHHhhchHHH--HHHHHHHHHHHH
Q 042445           92 VTSDPNGILQDSGIVDSIKIFL------------------NI-SSDPATFIQGAVPQILEKTEEEF--FSKIIDILRETA  150 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~------------------~~-~~~~~~~~q~~~~~~l~~~~~~~--~~~~~~~~~~~~  150 (246)
                      ++++        ++++.+....                  .. .++.++..+.++..+++.. ..+  +++.++.+++++
T Consensus       205 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~-~~~g~~~~~~~~~~~~~  275 (366)
T 1m32_A          205 IARE--------QKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKEL-AKEGGVAARHQRYQQNQ  275 (366)
T ss_dssp             EEEH--------HHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHH-HHHTHHHHHHHHHHHHH
T ss_pred             EECH--------HHHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHH-HHccCHhHHHHHHHHHH
Confidence            9998        7766543210                  00 1366778888888888742 233  678888999999


Q ss_pred             HHHHHHhhcCCCCccccC--CCCceEEEEEecc--ccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--C
Q 042445          151 DKCCDRLKEIPCITCPKK--PEGSMFVMVKLNY--SLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--E  224 (246)
Q Consensus       151 ~~l~~~L~~~~~~~~~~~--~~~g~~~~~~~~~--~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~  224 (246)
                      +.+.+.|+++ ++..+.+  +.+++++|++++.  ..     +..++ .+.|.++||.+.||..| .++++|++++.  +
T Consensus       276 ~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~l~~~gi~v~~~~~~-~~~~iRi~~~~~~~  347 (366)
T 1m32_A          276 RSLVAGMRAL-GFNTLLDDELHSPIITAFYSPEDPQY-----RFSEF-YRRLKEQGFVIYPGKVS-QSDCFRIGNIGEVY  347 (366)
T ss_dssp             HHHHHHHHHT-TCCBSSCGGGBCSSEEEEECCCCTTC-----CHHHH-HHHHHHTTEECEECCCS-SSCEEEEECCSSCC
T ss_pred             HHHHHHHHHC-CCeeccCchhcCceEEEEEcCccCCC-----CHHHH-HHHHHHCCEEEECCcCC-CCCEEEEecCCCCC
Confidence            9999999987 6663222  2467899988864  21     24444 55566779999998876 47899999995  7


Q ss_pred             hHHHHHHHHHHHHHHHH
Q 042445          225 PSALENGLGRMKAFYDR  241 (246)
Q Consensus       225 ~~~l~~~~~~l~~~~~~  241 (246)
                      ++++++++++|.+++++
T Consensus       348 ~~~i~~~~~~l~~~~~~  364 (366)
T 1m32_A          348 AADITALLTAIRTAMYW  364 (366)
T ss_dssp             HHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            89999999999988754

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=99.91  E-value=8.1e-24  Score=179.21  Aligned_cols=210  Identities=17%  Similarity=0.207  Sum_probs=148.8

Q ss_pred             hhhhhhhccc----cccCCcCCCccCC-ChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGF-SGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGS   76 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~-~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s   76 (246)
                      |.+++.++++    +++.++||||.++ +.+++++|.++|++||+++|+||+|.++.+.+..+ ++...+...+++   |
T Consensus       176 ~~l~~~i~~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~-~~~~~~~~~d~~---s  251 (395)
T 1vef_A          176 EALKRAVDEETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRF-AFEHFGIVPDIL---T  251 (395)
T ss_dssp             HHHHHHCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-THHHHTCCCSEE---E
T ss_pred             HHHHHHhccCEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchh-HhhhcCCCCCEE---E
Confidence            4455555543    4444468999765 68889999999999999999999999765544322 222222222333   8


Q ss_pred             cccccccCCceEEEEEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445           77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD  155 (246)
Q Consensus        77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  155 (246)
                      |||.+++ |+|+||+++++        ++++.+... ...+++++++.+.++.++++...+   ....+.++++++.+.+
T Consensus       252 ~sK~~~~-g~~~G~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~---~~~~~~~~~~~~~l~~  319 (395)
T 1vef_A          252 LAKALGG-GVPLGVAVMRE--------EVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLER---TRLWERAAELGPWFME  319 (395)
T ss_dssp             ECGGGGT-TSSCEEEEEEH--------HHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHH---HTTHHHHHHHHHHHHH
T ss_pred             EcccccC-CCceEEEEehH--------HHHhhhccCCcCCCcCCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHH
Confidence            8999886 89999999998        877766542 223346789999988888874222   3567778888999999


Q ss_pred             HhhcCCCCccc-cCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHH
Q 042445          156 RLKEIPCITCP-KKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGL  232 (246)
Q Consensus       156 ~L~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~  232 (246)
                      .|++++. ..+ ..+..|+++|++++..       ..++...+++++||.+.|+.    ++++|++++  .+++++++++
T Consensus       320 ~l~~~~~-~~~~~~~~~g~~~~~~~~~~-------~~~l~~~l~~~~gi~v~~~~----~~~iRi~~~~~~~~~~i~~~~  387 (395)
T 1vef_A          320 KLRAIPS-PKIREVRGMGLMVGLELKEK-------AAPYIARLEKEHRVLALQAG----PTVIRFLPPLVIEKEDLERVV  387 (395)
T ss_dssp             HHHTSCC-TTEEEEEEETTEEEEEESSC-------SHHHHHHHHHHHCEECEESS----TTEEEECCCTTCCHHHHHHHH
T ss_pred             HHHHhhc-CceEEEEEEEEEEEEEEcCh-------HHHHHHHHHHHCCeEEecCC----CCEEEEeCCCCCCHHHHHHHH
Confidence            9988642 111 1234578889888632       44555544438899999963    689999887  3899999999


Q ss_pred             HHHHHHH
Q 042445          233 GRMKAFY  239 (246)
Q Consensus       233 ~~l~~~~  239 (246)
                      ++|++++
T Consensus       388 ~~l~~~l  394 (395)
T 1vef_A          388 EAVRAVL  394 (395)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998875

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=99.91  E-value=1.1e-22  Score=171.13  Aligned_cols=213  Identities=14%  Similarity=0.103  Sum_probs=155.2

Q ss_pred             hhhhhhhcc-c----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcc
Q 042445            2 ELINQDITR-E----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGS   76 (246)
Q Consensus         2 e~~~~~~~~-~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s   76 (246)
                      |.+++.+++ +    ++++|+||||.+++   +++|.++|++||+++|+|++|+......    .   +...+..+++.|
T Consensus       117 ~~l~~~i~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~~~----~---~~~~~~d~~~~s  186 (384)
T 3zrp_A          117 GEVEEEVRKSEYKLVALTHVETSTGVREP---VKDVINKIRKYVELIVVDGVSSVGAEEV----K---AEEWNVDVYLTA  186 (384)
T ss_dssp             HHHHHHHHHSCEEEEEEESEETTTTEECC---HHHHHHHHGGGEEEEEEECTTTTTTSCC----C---TTTTTCSEEEEE
T ss_pred             HHHHHHHHhCCCcEEEEeCCCCCCceECc---HHHHHHHHHhcCCEEEEECcccccCccc----c---ccccCCCEEEec
Confidence            455565554 2    88899999999998   8889999999999999999988543221    1   112234588999


Q ss_pred             cccccccCCceEEEEEeeCCCCCcchhhHHHHH-------------HHHhh----------hc-CCCCchHHHHHHHHHh
Q 042445           77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSI-------------KIFLN----------IS-SDPATFIQGAVPQILE  132 (246)
Q Consensus        77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l-------------~~~~~----------~~-~~~~~~~q~~~~~~l~  132 (246)
                      ++|.+++ +.++||+++++        ++++.+             .....          .. .+.+...+.++..++.
T Consensus       187 ~~K~~~~-~~g~g~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~  257 (384)
T 3zrp_A          187 SQKALGS-AAGLGLLLLSP--------KALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFR  257 (384)
T ss_dssp             TTSTTCC-CSSEEEEEECH--------HHHHHHHHCCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHH
T ss_pred             CcccccC-CCceEEEEECH--------HHHHHhcCCCCCCcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHH
Confidence            9998642 23499999988        877776             22211          01 2556667777767776


Q ss_pred             hchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCC----CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecC
Q 042445          133 KTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPE----GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPG  208 (246)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg  208 (246)
                      ...+..+++.++.++++++.+.+.|+++ ++.. ..+.    +++++|++++..      +..++ .+.|.++||.+.+|
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~~~~~~~~~~~~~~~~~------~~~~~-~~~l~~~gi~v~~g  328 (384)
T 3zrp_A          258 LIEKEGIENRIKRHTMVASAIRAGLEAL-GLEI-VARRPESYSNTVTGVILKVA------DPQKV-LAGTVNEGVEFAPG  328 (384)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCB-SCSSGGGBCSSEEEEECSSS------CHHHH-HHHHHTTTCCCEEC
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHHHHHC-CCeE-ccCcccccCccEEEEECCCC------CHHHH-HHHHHHCCEEEecC
Confidence            4334447889999999999999999988 7763 4444    577888877642      24444 55566779999998


Q ss_pred             CCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHHh
Q 042445          209 ITVGLKDWLRITFAV--EPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       209 ~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~~  243 (246)
                      ..+.. +++|+++..  +++++++++++|.+++++..
T Consensus       329 ~~~~~-~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~  364 (384)
T 3zrp_A          329 VHPAF-KYFRIGHMGWVTPNDAIIAISVIERTLRKLG  364 (384)
T ss_dssp             CCTTC-CEEEEECCSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCc-CEEEEeccccCCHHHHHHHHHHHHHHHHHcC
Confidence            85444 999999883  89999999999999998764

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=99.90  E-value=2e-23  Score=175.86  Aligned_cols=215  Identities=16%  Similarity=0.098  Sum_probs=142.5

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccC-CCCCccccccCCcccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFG-NTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~-~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      ++++||||||.  +..++++|.++|++||+++|+||+|..+..+ .....+. ..   ...+++.|+||.+  +|+|+||
T Consensus       146 ~~~~p~nptG~--~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~-~~---~~di~~~S~sK~l--~g~~~G~  217 (374)
T 2aeu_A          146 ITGSTMDLKVI--ELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPAL-KL---GADLVVTSTDKLM--EGPRGGL  217 (374)
T ss_dssp             EECBCTTSCBC--CHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHH-HH---TCSEEEEETTSSS--SSCSCEE
T ss_pred             EEccCCCCCCC--CcccHHHHHHHHHHcCCEEEEECCcccccccccccCCcc-cc---CCcEEEecCcccc--cCcceEE
Confidence            56899999997  7789999999999999999999999876421 1011011 12   2348899999994  5689999


Q ss_pred             EEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHH----HHHHHHHhhcC---CC
Q 042445           91 LVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRET----ADKCCDRLKEI---PC  162 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~----~~~l~~~L~~~---~~  162 (246)
                      +++++        ++++.++.... .+.+++++.+.++..++.......+++..+..+..    ++.+.+.|..+   +|
T Consensus       218 ~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g  289 (374)
T 2aeu_A          218 LAGKK--------ELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELKAIDDNIN  289 (374)
T ss_dssp             EEEEH--------HHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEE
T ss_pred             EEECH--------HHHHHHHHhhccccCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccC
Confidence            99998        99998887654 33367889999998888754221222222222222    45555555543   24


Q ss_pred             CccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC-CCeEEEEeec-C--hHHHHHHHHHHHHH
Q 042445          163 ITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-KDWLRITFAV-E--PSALENGLGRMKAF  238 (246)
Q Consensus       163 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~iRls~~~-~--~~~l~~~~~~l~~~  238 (246)
                      +.....|.+.++.|..++...  ...++.+++..+++++||.+.||..|.. ++++|++++. +  +.+++++.+.|+++
T Consensus       290 ~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~ll~~~gV~v~~g~~~~~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~  367 (374)
T 2aeu_A          290 IVYERTPTGFVIKRVYKDDTI--NIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVES  367 (374)
T ss_dssp             EEEEECSSEEEEEEEESSHHH--HHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHH
T ss_pred             cceeeCCceEEEEeecccccc--cccchHHHHHHHHHhCCEEEecCCCCCCCCCeEEEEcCCchHHHHHHHHHHHHHHHH
Confidence            442345666666665433210  0001223666788889999999987754 6799999984 2  23478888888888


Q ss_pred             HHHHhh
Q 042445          239 YDRHAE  244 (246)
Q Consensus       239 ~~~~~~  244 (246)
                      +++..+
T Consensus       368 l~~~~~  373 (374)
T 2aeu_A          368 IKMAFK  373 (374)
T ss_dssp             HHHHTC
T ss_pred             HHHHhc
Confidence            877654

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=99.90  E-value=1.7e-22  Score=170.75  Aligned_cols=204  Identities=12%  Similarity=0.034  Sum_probs=147.3

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccc-cccCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKR-GIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~-~~~~g~r~G~   90 (246)
                      ++++|+||||.+++   +++|.++|+++|+++|+||+|+....   + ..+...   +..+++.|+||. ++.+|+  ||
T Consensus       139 ~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~g~~---~-~~~~~~---~~d~~~~s~sK~~~~~~g~--G~  206 (392)
T 2z9v_A          139 SVCHHDTPSGTINP---IDAIGALVSAHGAYLIVDAVSSFGGM---K-THPEDC---KADIYVTGPNKCLGAPPGL--TM  206 (392)
T ss_dssp             EEESEEGGGTEECC---HHHHHHHHHHTTCEEEEECTTTBTTB---S-CCGGGG---TCSEEEECSSSTTCCCSCC--EE
T ss_pred             EEeccCCCCceecc---HHHHHHHHHHcCCeEEEEcccccCCc---c-cccccc---cceEEEecCcccccCCCce--eE
Confidence            88899999999998   78999999999999999999984221   1 112222   245888999995 445664  99


Q ss_pred             EEeeCCCCCcchhhHHHHHHHHh--------------------hh-cCCCCchHHHHHHHHHhhchHHH-HHHHHHHHHH
Q 042445           91 LVTSDPNGILQDSGIVDSIKIFL--------------------NI-SSDPATFIQGAVPQILEKTEEEF-FSKIIDILRE  148 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~~--------------------~~-~~~~~~~~q~~~~~~l~~~~~~~-~~~~~~~~~~  148 (246)
                      +++++        ++++.++...                    .. ..+.+...+.++..++.. ...+ +++.++.+++
T Consensus       207 l~~~~--------~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~-~~~~g~~~~~~~~~~  277 (392)
T 2z9v_A          207 MGVSE--------RAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDL-YLNEGPEAVWARHAL  277 (392)
T ss_dssp             EEECH--------HHHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHH-HHHHCHHHHHHHHHH
T ss_pred             EEECH--------HHHHHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHH-HHhccHHHHHHHHHH
Confidence            99988        8888775311                    11 224456666666666663 2333 7788889999


Q ss_pred             HHHHHHHHhhcCCCCccccC-CC---CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEe-e-
Q 042445          149 TADKCCDRLKEIPCITCPKK-PE---GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITF-A-  222 (246)
Q Consensus       149 ~~~~l~~~L~~~~~~~~~~~-~~---~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~-~-  222 (246)
                      +++.+.+.|+++ ++.. .. +.   .+++++++++...     +..++...+.+++||.+.||..+..++++|+++ + 
T Consensus       278 ~~~~l~~~L~~~-g~~~-~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~L~~~~gi~v~~g~~~~~~~~lRi~~~~~  350 (392)
T 2z9v_A          278 TAKAMRAGVTAM-GLSV-WAASDSIASPTTTAVRTPDGV-----DEKALRQAARARYGVVFSSGRGETLGKLTRIGHMGP  350 (392)
T ss_dssp             HHHHHHHHHHHT-TCCB-SSSSGGGBCTTEEEEECCTTC-----CHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGG
T ss_pred             HHHHHHHHHHHc-CCee-ccCCccccCCceEEEECCCCC-----CHHHHHHHHHhcCCEEEecCCCCCCCCeEEEeCccc
Confidence            999999999887 6763 33 32   4777888775321     345555554444599999998766689999995 5 


Q ss_pred             -cChHHHHHHHHHHHHHHHHHh
Q 042445          223 -VEPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       223 -~~~~~l~~~~~~l~~~~~~~~  243 (246)
                       .+++++++++++|.+++++..
T Consensus       351 ~~~~~~i~~~~~~l~~~~~~~~  372 (392)
T 2z9v_A          351 TAQPIYAIAALTALGGAMNAAG  372 (392)
T ss_dssp             GCSHHHHHHHHHHHHHHHHHTT
T ss_pred             ccCHHHHHHHHHHHHHHHHHcC
Confidence             489999999999999987654

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=99.90  E-value=2.4e-23  Score=173.96  Aligned_cols=204  Identities=12%  Similarity=-0.005  Sum_probs=142.3

Q ss_pred             cccCCcCCC-ccCCChhhHHHHHHHHHHcCCEEEEccccCCccc--CCCCCccccccCCcccEEEEcccccccccCCceE
Q 042445           12 FSDFQVFHV-GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAF--GNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRL   88 (246)
Q Consensus        12 ~~~~p~NPt-G~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~--~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~   88 (246)
                      ++++||||| |.+++.+++++|.++|++||+++|+|++|..+..  .+.....   +..... +++.|+||.+++++.  
T Consensus       142 ~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~---~~~~~d-~~~~s~sK~~~~~~g--  215 (359)
T 3pj0_A          142 LIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEE---ICALFD-SVYVSFYKGIGGIAG--  215 (359)
T ss_dssp             EEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHH---HHTTCS-EEEEESSSTTCCSSC--
T ss_pred             EEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHH---hhccCC-EEEEeccccCCCcce--
Confidence            888999998 7999999999999999999999999999875542  1211111   111112 445689998877642  


Q ss_pred             EEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHH--HHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCcc
Q 042445           89 GWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQ--GAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITC  165 (246)
Q Consensus        89 G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q--~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~  165 (246)
                      ||+++++        ++++.++.... .....+...+  .++...+.    ... +..+.+.++++.+.+.|++++++..
T Consensus       216 g~~~~~~--------~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~----~~~-~~~~~~~~~~~~l~~~L~~~~g~~~  282 (359)
T 3pj0_A          216 AILAGND--------DFVQEAKIWKRRYGGDLISLYPYILSADYYFE----KRI-GKMAEYFEAAKGLAERFNSCSGVKT  282 (359)
T ss_dssp             EEEEECH--------HHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHH----HHG-GGHHHHHHHHHHHHHHHHTSTTEEE
T ss_pred             EEEECCH--------HHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH----HHH-HHhHHHHHHHHHHHHHHhhCCCcee
Confidence            7788877        89998876533 2222222222  22223333    223 3334467888999999999888874


Q ss_pred             ccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEee-----cChHHHHHHHHHHHHH
Q 042445          166 PKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFA-----VEPSALENGLGRMKAF  238 (246)
Q Consensus       166 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~-----~~~~~l~~~~~~l~~~  238 (246)
                      ...|.+++++|++++....    .+.+.+.+.|.++||.+.||..|+.  .+++|++++     .+.+++++++++|.+.
T Consensus       283 ~~~~~~~~~~~~~~~~~~~----~~~~~l~~~l~~~GV~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~  358 (359)
T 3pj0_A          283 VPEVPVSNMFHVYFENSAD----EIGAILTKIQDETGVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEKE  358 (359)
T ss_dssp             ESSSCSSSEEEEEESSCHH----HHHHHHHHHHHHHCEECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred             eccCCcceEEEEEecCccc----hhHHHHHHHHHhcCcEecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence            3367888999988864310    1355667788899999999987764  468999887     3788999999998765

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=99.90  E-value=9.9e-23  Score=172.35  Aligned_cols=216  Identities=13%  Similarity=0.050  Sum_probs=154.2

Q ss_pred             hhhhhhhcc-c----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcc
Q 042445            2 ELINQDITR-E----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGS   76 (246)
Q Consensus         2 e~~~~~~~~-~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s   76 (246)
                      +.+++.+++ +    ++++||||||.+++   +++|.++|+++|+++|+||+|....   .+. .+..+   +..+++.|
T Consensus       133 ~~l~~~l~~~~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~li~Dea~~~g~---~~~-~~~~~---~~d~~~~s  202 (396)
T 2ch1_A          133 ETLARAIELHQPKCLFLTHGDSSSGLLQP---LEGVGQICHQHDCLLIVDAVASLCG---VPF-YMDKW---EIDAVYTG  202 (396)
T ss_dssp             HHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHHHHHHTTCEEEEECTTTBTT---BCC-CTTTT---TCCEEECC
T ss_pred             HHHHHHHHhCCCCEEEEECCCCCCceecC---HHHHHHHHHHcCCEEEEEccccccC---Ccc-chhhc---CcCEEEEc
Confidence            445555544 2    88999999999999   7788899999999999999998321   111 12222   22366789


Q ss_pred             cccccccCCceEEEEEeeCCCCCcchhhHHHHHHHH-----------------h------h-hcCCCCchHHHHHHHHHh
Q 042445           77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIF-----------------L------N-ISSDPATFIQGAVPQILE  132 (246)
Q Consensus        77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~-----------------~------~-~~~~~~~~~q~~~~~~l~  132 (246)
                      ++|.++.+ .++||+++++        ++++.+...                 .      . ..++.+...+.++..++.
T Consensus       203 ~~K~~~~~-~g~g~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~  273 (396)
T 2ch1_A          203 AQKVLGAP-PGITPISISP--------KALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALA  273 (396)
T ss_dssp             CC-CCCCC-SSCEEEEECH--------HHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHH
T ss_pred             CCccccCC-CCeEEEEECH--------HHHHhhhhccCcccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHH
Confidence            99975432 3469999988        777776431                 0      1 112467778888888887


Q ss_pred             hchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC----ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecC
Q 042445          133 KTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG----SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPG  208 (246)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg  208 (246)
                      ...+.++++.++.++++++.+.+.|+++ |+.. ..+.+    +.+++++++...     +..++...+++++||.+.+|
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~L~~~~gi~v~~g  346 (396)
T 2ch1_A          274 QIAEEGLENQIKRRIECAQILYEGLGKM-GLDI-FVKDPRHRLPTVTGIMIPKGV-----DWWKVSQYAMNNFSLEVQGG  346 (396)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHHHHH-TCCB-SSCSGGGBCTTEEEEECCTTC-----CHHHHHHHHHHHHCBCCBCC
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHC-CCee-ccCCccccCCceEEEEcCCCC-----CHHHHHHHHHHhCCEEEecC
Confidence            5334568888999999999999999987 6763 44443    347887775321     35556555555679999998


Q ss_pred             CCcCCCCeEEEEe-ec--ChHHHHHHHHHHHHHHHHHh
Q 042445          209 ITVGLKDWLRITF-AV--EPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       209 ~~f~~~~~iRls~-~~--~~~~l~~~~~~l~~~~~~~~  243 (246)
                      ..+..++++|+++ +.  +++++++++++|.+++++..
T Consensus       347 ~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~~~  384 (396)
T 2ch1_A          347 LGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKATH  384 (396)
T ss_dssp             CGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHC
T ss_pred             ccccCCCEEEEECCCCcCCHHHHHHHHHHHHHHHHHhC
Confidence            8766689999999 42  78899999999999998764

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.90  E-value=2.4e-22  Score=167.20  Aligned_cols=204  Identities=12%  Similarity=0.040  Sum_probs=148.4

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHc--CCEEEEccccCCcccCCCCCccccccCCcccEEEEccccc-ccccCCceE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKL--GIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISK-RGIVPGLRL   88 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~--~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK-~~~~~g~r~   88 (246)
                      ++++|+||||.+++   +++|.++|++|  |+++|+||+|+....   +. .+..   .+..+++.|+|| .++.+|  +
T Consensus       126 ~~~~~~nptG~~~~---l~~i~~l~~~~~~~~~li~D~a~~~~~~---~~-~~~~---~~~d~~~~s~~K~~~~~~g--~  193 (352)
T 1iug_A          126 LLVHSETSTGALAD---LPALARAFKEKNPEGLVGADMVTSLLVG---EV-ALEA---MGVDAAASGSQKGLMCPPG--L  193 (352)
T ss_dssp             EEESEETTTTEECC---HHHHHHHHHHHCTTCEEEEECTTTBTTB---CC-CSGG---GTCSEEEEESSSTTCCCSC--E
T ss_pred             EEEEecCCcceecC---HHHHHHHHHhhCCCCEEEEECCccccCc---ce-eccc---cCeeEEEecCcccccCCCc--e
Confidence            78899999999988   78999999999  999999999973221   11 1111   234578999999 544445  7


Q ss_pred             EEEEeeCCCCCcchhhHHHH---------HH----HH--hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 042445           89 GWLVTSDPNGILQDSGIVDS---------IK----IF--LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKC  153 (246)
Q Consensus        89 G~i~~~~~~~~~~~~~~~~~---------l~----~~--~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l  153 (246)
                      ||+++++        ++++.         +.    ..  .....+.+...+.++..++.... .++++.++.++++++.+
T Consensus       194 G~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~~l  264 (352)
T 1iug_A          194 GFVALSP--------RALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVL-PRLEEHLALKAWQNALL  264 (352)
T ss_dssp             EEEEECH--------HHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHG-GGHHHHHHHHHHHHHHH
T ss_pred             eEEEECH--------HHHHHhhCCCceeeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            9999987        66544         22    11  11223567777877777776422 23788889999999999


Q ss_pred             HHHhhcCCCCccccCCC-CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHH
Q 042445          154 CDRLKEIPCITCPKKPE-GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALEN  230 (246)
Q Consensus       154 ~~~L~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~  230 (246)
                      .+.|+++ ++. +..|. .++++|++++...     +..++ .+.|.++||.+.||..+..++++|++++.  +++++++
T Consensus       265 ~~~L~~~-g~~-~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~  336 (352)
T 1iug_A          265 YGVGEEG-GLR-PVPKRFSPAVAAFYLPEGV-----PYARV-KEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALG  336 (352)
T ss_dssp             HHHHHHT-TCE-ESCSSBCTTCEEEECCTTC-----CHHHH-HHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHH
T ss_pred             HHHHHHC-CCc-ccccccCCeEEEEEcCCCC-----CHHHH-HHHHHHCCEEEEeCCCccCCCEEEEEccccCCHHHHHH
Confidence            9999987 776 34453 6788888876321     24444 55566779999998855457899999994  7899999


Q ss_pred             HHHHHHHHHHHHhh
Q 042445          231 GLGRMKAFYDRHAE  244 (246)
Q Consensus       231 ~~~~l~~~~~~~~~  244 (246)
                      ++++|.+++++...
T Consensus       337 ~~~~l~~~~~~~~~  350 (352)
T 1iug_A          337 VAGMFREVLEEILP  350 (352)
T ss_dssp             HHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999887643

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=99.90  E-value=6.7e-23  Score=172.87  Aligned_cols=207  Identities=10%  Similarity=0.152  Sum_probs=145.9

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHH----HcCCEEEEccccCCcccCCCCCccccccCCcccEEE
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAK----KLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLT   73 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~----~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~   73 (246)
                      |.+++.++++    ++++|+||||.+++   +++|.++|+    ++|+++|+||+|+....   +. .   +......++
T Consensus       145 ~~l~~~i~~~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~~~~li~Dea~~~g~~---~~-~---~~~~~~d~~  214 (390)
T 1elu_A          145 AVLANHLGPKTRLVILSHLLWNTGQVLP---LAEIMAVCRRHQGNYPVRVLVDGAQSAGSL---PL-D---FSRLEVDYY  214 (390)
T ss_dssp             HHHHTTCCTTEEEEEEESBCTTTCCBCC---HHHHHHHHHHCCSSSCCEEEEECTTTBTTB---CC-C---TTTSCCSEE
T ss_pred             HHHHHhcCCCceEEEEeccccCCceecC---HHHHHHHHhhhhhhcCcEEEEEcccccCCc---CC-C---hhhcCCCEE
Confidence            3455555443    88999999999999   888999999    99999999999985321   11 1   122235588


Q ss_pred             EcccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHH----------------------hhh-cCCCCchHHHHHHHH
Q 042445           74 LGSISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIF----------------------LNI-SSDPATFIQGAVPQI  130 (246)
Q Consensus        74 ~~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~----------------------~~~-~~~~~~~~q~~~~~~  130 (246)
                      +.|+||. .++|.++||+++++        ++++.+...                      ..+ ..+.++..+.++..+
T Consensus       215 ~~s~~K~-~~~~~g~G~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a  285 (390)
T 1elu_A          215 AFTGHKW-FAGPAGVGGLYIHG--------DCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAA  285 (390)
T ss_dssp             EEESSST-TCCCTTCEEEEECT--------TTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHH
T ss_pred             Ecccccc-ccCCCceEEEEECH--------HhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHH
Confidence            9999994 34556799999987        666655431                      111 225577777777777


Q ss_pred             HhhchH-HHHHHHHHHHHHHHHHHHHHhhcCCCCcccc--CCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEec
Q 042445          131 LEKTEE-EFFSKIIDILRETADKCCDRLKEIPCITCPK--KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLP  207 (246)
Q Consensus       131 l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p  207 (246)
                      +....+ .++++.++.++++++.+.+.|++++++..+.  .+.++++ +++++...     +..++ .+.|.++||.+.|
T Consensus       286 l~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~-~~~l~~~gi~v~~  358 (390)
T 1elu_A          286 LQLHQRQGTAEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAGLV-SFTVDSPL-----GHRAI-VQKLEEQRIYLRT  358 (390)
T ss_dssp             HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSSEE-EEEECSSS-----CHHHH-HHHHHHTTEECEE
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCCcEEecCccccccEE-EEEcCCCC-----CHHHH-HHHHHHCCEEEEe
Confidence            763222 3488889999999999999999887776432  2345554 44775321     24444 4456788999999


Q ss_pred             CCCcCCCCeEEEEee--cChHHHHHHHHHHHH
Q 042445          208 GITVGLKDWLRITFA--VEPSALENGLGRMKA  237 (246)
Q Consensus       208 g~~f~~~~~iRls~~--~~~~~l~~~~~~l~~  237 (246)
                      |.   .++++|+++.  .+++++++++++|++
T Consensus       359 ~~---~~~~iRis~~~~~~~~~i~~~~~~l~~  387 (390)
T 1elu_A          359 IA---DPDCIRACCHYITDEEEINHLLARLAD  387 (390)
T ss_dssp             ET---TTTEEEEECCTTCCHHHHHHHHHHHTT
T ss_pred             cC---CCCeEEEecccCCCHHHHHHHHHHHHh
Confidence            76   3689999986  489999999988865

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=99.90  E-value=4.8e-22  Score=168.73  Aligned_cols=214  Identities=10%  Similarity=0.069  Sum_probs=154.5

Q ss_pred             hhhhhhhcc-c----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCC-cccCCCCCccccccCCcccEEEEc
Q 042445            2 ELINQDITR-E----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGH-LAFGNTPFVSMGVFGSIVPLLTLG   75 (246)
Q Consensus         2 e~~~~~~~~-~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~-~~~~~~~~~~~~~~~~~~~~i~~~   75 (246)
                      +.+++.+++ +    ++++|+||  ...+   +++|.++|++||+++|+||+|+. +.+.+.....   +.  ...+++.
T Consensus       153 ~~l~~~l~~~~~~~v~~~~p~~~--~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~---~~--~~di~~~  222 (407)
T 2dkj_A          153 EEVRRLALEHRPKVIVAGASAYP--RFWD---FKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNP---LP--YAHVVTS  222 (407)
T ss_dssp             HHHHHHHHHHCCSEEEECCSSCC--SCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCC---TT--TCSEEEE
T ss_pred             HHHHHHHhhcCCeEEEEeccccC--CCCC---HHHHHHHHHHcCCEEEEEccccccccccCccCCc---cc--cccEEEE
Confidence            345555542 2    66799998  4444   89999999999999999999997 5444422211   11  1458899


Q ss_pred             ccccccccCCceEEEEEee-CCCCCcchhhHHHHHHHHhhhc--CCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 042445           76 SISKRGIVPGLRLGWLVTS-DPNGILQDSGIVDSIKIFLNIS--SDPATFIQGAVPQILEKTEEEFFSKIIDILRETADK  152 (246)
Q Consensus        76 s~sK~~~~~g~r~G~i~~~-~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~  152 (246)
                      |+||.  ++|.|+||++++ +        ++++.+......+  ++.++....++..++......++++.++.++++++.
T Consensus       223 s~sK~--l~g~~~G~~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~  292 (407)
T 2dkj_A          223 TTHKT--LRGPRGGLILSNDP--------ELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKR  292 (407)
T ss_dssp             ESSGG--GCCCSCEEEEESCH--------HHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred             ecccc--CCCCCceEEEECCH--------HHHHHHHhhhcccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            99995  458889999998 5        8888887764322  233444444666666642246788899999999999


Q ss_pred             HHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCc------CCCCeEEEEee----
Q 042445          153 CCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITV------GLKDWLRITFA----  222 (246)
Q Consensus       153 l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f------~~~~~iRls~~----  222 (246)
                      +.+.|+++ ++..+..+.+++++|++++...   .  +.+.+.+.|.++||.+.+|..+      ..++++|++++    
T Consensus       293 l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~  366 (407)
T 2dkj_A          293 LAEELARR-GYRIVTGGTDNHLFLVDLRPKG---L--TGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITT  366 (407)
T ss_dssp             HHHHHHHT-TCEEGGGSCSSSEEEEECGGGT---C--CHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHH
T ss_pred             HHHHHHhC-CceeecCCCCceEEEEECcccC---C--CHHHHHHHHHHcCceecCCcCccccccccCCCceeeecccccc
Confidence            99999988 6664333567899998886421   1  3444556678899999998754      12678999996    


Q ss_pred             --cChHHHHHHHHHHHHHHHH
Q 042445          223 --VEPSALENGLGRMKAFYDR  241 (246)
Q Consensus       223 --~~~~~l~~~~~~l~~~~~~  241 (246)
                        .+++++++++++|.+++++
T Consensus       367 ~~~~~~~i~~~~~~l~~~~~~  387 (407)
T 2dkj_A          367 RGFTPEEMPLVAELIDRALLE  387 (407)
T ss_dssp             TTCCGGGHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHhc
Confidence              5889999999999999876

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.90  E-value=1.6e-23  Score=179.60  Aligned_cols=210  Identities=14%  Similarity=0.046  Sum_probs=139.4

Q ss_pred             cccCCcCCC-cc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEE
Q 042445           12 FSDFQVFHV-GS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLG   89 (246)
Q Consensus        12 ~~~~p~NPt-G~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G   89 (246)
                      ++++|+||+ |. .++++++++|.++|++||+++|+||+|.++ ..+..+ ....++-...   +.||||.++ +|+|+|
T Consensus       206 vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~-~~g~~~-~~~~~~~~~d---i~t~sK~~~-~G~~iG  279 (434)
T 3l44_A          206 ILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFMYGG-AQDLLGVTPD---LTALGKVIG-GGLPIG  279 (434)
T ss_dssp             EEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT-TSSSSC-HHHHHTCCCS---EEEEEGGGG-TTSSCE
T ss_pred             EEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccce-eccccH-HHHHcCCCCC---eeehhhhhc-CCcCee
Confidence            666665655 44 448899999999999999999999999988 554322 2222221112   457999987 799999


Q ss_pred             EEEeeCCCCCcchhhHHHHHHHH----hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhh----cCC
Q 042445           90 WLVTSDPNGILQDSGIVDSIKIF----LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLK----EIP  161 (246)
Q Consensus        90 ~i~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~----~~~  161 (246)
                      |+++++        ++++.+...    ...+++.|++++.++.++++...+   ++..+.++++.+.+.+.|+    .++
T Consensus       280 ~~~~~~--------~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~  348 (434)
T 3l44_A          280 AYGGKK--------EIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQ---EGLYEKLDELGATLEKGILEQAAKHN  348 (434)
T ss_dssp             EEEECH--------HHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             eEEEcH--------HHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHc---ccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999988        888877652    223458899999999998874322   2233333444444444443    343


Q ss_pred             CCccccCCCCceEEEEEeccccccC-------CCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHH
Q 042445          162 CITCPKKPEGSMFVMVKLNYSLLEG-------INSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGR  234 (246)
Q Consensus       162 ~~~~~~~~~~g~~~~~~~~~~~~~~-------~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~  234 (246)
                      .+.  ..+..|.++++.+......+       .......+.+.|.++||.+.|+.    .+++|+++..+++++++++++
T Consensus       349 ~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----~~~~rl~~~~t~e~i~~~l~~  422 (434)
T 3l44_A          349 IDI--TLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQEGVNLAPSK----YEAWFLTTEHTKEDIEYTIEA  422 (434)
T ss_dssp             CCE--EEEEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHTTEECCSST----TCCEECCTTCCHHHHHHHHHH
T ss_pred             CCE--EEEeeccEEEEEEecCcccchhhccccCHHHHHHHHHHHHHCCeEEeecC----CCcEEEecccCHHHHHHHHHH
Confidence            222  13345677777674321100       00012345566778899999875    467899877799999999999


Q ss_pred             HHHHHHHHhh
Q 042445          235 MKAFYDRHAE  244 (246)
Q Consensus       235 l~~~~~~~~~  244 (246)
                      |++++++..+
T Consensus       423 l~~~l~~~~~  432 (434)
T 3l44_A          423 VGRAFAALAD  432 (434)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999987654

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=99.89  E-value=2.6e-22  Score=167.56  Aligned_cols=198  Identities=12%  Similarity=0.008  Sum_probs=147.3

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHc-CCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccc-cCCceEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKL-GIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGI-VPGLRLG   89 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~g~r~G   89 (246)
                      ++++||||||.+++   +++|.++|++| |+++|+|++|..+....    .+..     ..+++.|++|.++ ++|  +|
T Consensus       135 ~~~~~~nptG~~~~---l~~i~~la~~~p~~~li~D~a~~~~~~~~----~~~~-----~d~~~~s~~K~~~~~~G--~g  200 (362)
T 3ffr_A          135 CLTHNETSSGVSMP---VEDINTFRDKNKDALIFVDAVSSLPYPKF----DWTK-----IDSVFFSVQKCFGLPAG--LG  200 (362)
T ss_dssp             EEESEETTTTEECC---HHHHTTSGGGSTTSEEEEECTTTTTSSCC----CTTS-----CSEEEEETTSTTCCCSC--CE
T ss_pred             EEEcCCCCcceeCC---HHHHHHHHHhCCCCEEEEecccccCCccc----ChhH-----CcEEEEecccccCCCCc--eE
Confidence            88899999999998   78899999999 99999999988654221    1111     2378899999998 677  57


Q ss_pred             EEEeeCCCCCcchhhHHHHHHHHhh---------------------h-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHH
Q 042445           90 WLVTSDPNGILQDSGIVDSIKIFLN---------------------I-SSDPATFIQGAVPQILEKTEEEFFSKIIDILR  147 (246)
Q Consensus        90 ~i~~~~~~~~~~~~~~~~~l~~~~~---------------------~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~  147 (246)
                      ++++++        ++++.+.....                     . ..+.+...+.++..++....+..+++.++.++
T Consensus       201 ~~~~~~--------~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~  272 (362)
T 3ffr_A          201 VWILND--------RVIEKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTE  272 (362)
T ss_dssp             EEEEEH--------HHHHHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             EEEECH--------HHHHHhhhccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence            788888        88887776532                     0 23567777777777776322333788888999


Q ss_pred             HHHHHHHHHhhcCCCCccccC---CCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec-
Q 042445          148 ETADKCCDRLKEIPCITCPKK---PEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV-  223 (246)
Q Consensus       148 ~~~~~l~~~L~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~-  223 (246)
                      ++++.+.+.|+++||+..+..   +..+..+|+.++.       +..++.. .|.++||.+.+|..+..++++|++++. 
T Consensus       273 ~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~-~l~~~gi~~~~g~~~~~~~~iRis~~~~  344 (362)
T 3ffr_A          273 EKAALINTYIESSKVFSFGVEDAKLRSMTTIVANTTM-------LPGEINK-ILEPFDMAVGAGYGSKKETQIRIANFPA  344 (362)
T ss_dssp             HHHHHHHHHHHHCSSEEESSSCGGGBCSSEEEEEESS-------CHHHHHH-HHGGGTEEEEECSGGGTTTEEEEECCTT
T ss_pred             HHHHHHHHHHHHccCceeccCChhhcCCceEEEecCC-------CHHHHHH-HHHHCCeEEecCccccCCCEEEEECCCC
Confidence            999999999999888774321   1246677777763       2455544 556669999999776668999999984 


Q ss_pred             -ChHHHHHHHHHHHHHH
Q 042445          224 -EPSALENGLGRMKAFY  239 (246)
Q Consensus       224 -~~~~l~~~~~~l~~~~  239 (246)
                       ++++++++++.|++++
T Consensus       345 ~~~e~i~~l~~~l~~~~  361 (362)
T 3ffr_A          345 HSLEQVHKLVQTLKEKI  361 (362)
T ss_dssp             SCHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHh
Confidence             7888888888887653

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=99.89  E-value=8.1e-23  Score=175.36  Aligned_cols=216  Identities=13%  Similarity=0.106  Sum_probs=149.6

Q ss_pred             hhhhhhh-ccc---cccCC-cCCCccC-CChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEc
Q 042445            2 ELINQDI-TRE---FSDFQ-VFHVGSG-FSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLG   75 (246)
Q Consensus         2 e~~~~~~-~~~---~~~~p-~NPtG~~-~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~   75 (246)
                      |.+++.+ .++   ++.+| +|+||.+ ++.+++++|.++|++||+++|+||+|.++...+..+ .....+...++   .
T Consensus       202 ~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~~-~~~~~~~~~di---~  277 (433)
T 1z7d_A          202 EALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLL-CVHHYNVKPDV---I  277 (433)
T ss_dssp             HHHHHHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS-GGGGGTCCCSE---E
T ss_pred             HHHHHHhCCCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcch-hhHhcCCCCCE---E
Confidence            4556666 233   55566 4568975 788999999999999999999999999876655322 22222222223   3


Q ss_pred             ccccccccCC-ceEEEEEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 042445           76 SISKRGIVPG-LRLGWLVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKC  153 (246)
Q Consensus        76 s~sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l  153 (246)
                      |+||.++ +| +|+||+++++        ++++.+... ...+++.|+++++++.++|+...+   +...+.++++++.+
T Consensus       278 t~sK~l~-~G~~~~G~v~~~~--------~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l  345 (433)
T 1z7d_A          278 LLGKALS-GGHYPISAVLAND--------DIMLVIKPGEHGSTYGGNPLAASICVEALNVLIN---EKLCENAEKLGGPF  345 (433)
T ss_dssp             EECGGGG-TTSSCCEEEEECH--------HHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHH
T ss_pred             EECcccc-CCCCCeEEEEECH--------HHHhhhccccccccCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHH
Confidence            8999987 79 9999999998        887776543 334457899999999888874222   23455666777777


Q ss_pred             HHHhhcC----CCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHH
Q 042445          154 CDRLKEI----PCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSA  227 (246)
Q Consensus       154 ~~~L~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~  227 (246)
                      .+.|+++    +.+. . .+..|.++|++++...    .+..++ ...|.++||.+.|+.    .+++|++++.  ++++
T Consensus       346 ~~~L~~l~~~~~~~~-~-~~~~g~~~~i~~~~~~----~~~~~~-~~~l~~~Gv~v~~~~----~~~iRi~~~~~~t~e~  414 (433)
T 1z7d_A          346 LENLKRELKDSKIVR-D-VRGKGLLCAIEFKNEL----VNVLDI-CLKLKENGLITRDVH----DKTIRLTPPLCITKEQ  414 (433)
T ss_dssp             HHHHHHHHTTCTTEE-E-EEEETTEEEEEECTTT----CCHHHH-HHHHHHTTEECCEET----TTEEEECCCTTCCHHH
T ss_pred             HHHHHHHHHhCCCeE-E-EEeeeeEEEEEEccCh----hHHHHH-HHHHHHCCeEEecCC----CCEEEEECCcCCCHHH
Confidence            7777653    3222 1 2345778888886421    023444 455667899999863    6899998873  8999


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 042445          228 LENGLGRMKAFYDRHAE  244 (246)
Q Consensus       228 l~~~~~~l~~~~~~~~~  244 (246)
                      +++++++|.+++++...
T Consensus       415 i~~~l~~l~~~l~~~~~  431 (433)
T 1z7d_A          415 LDECTEIIVKTVKFFDE  431 (433)
T ss_dssp             HHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999887643

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=99.89  E-value=1.4e-22  Score=170.41  Aligned_cols=218  Identities=12%  Similarity=0.017  Sum_probs=149.3

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      |.+++.++++    ++++|+||||.+++   +++|.++|+++|++ |+||+|+...   .+. .+..   .+..+++.|+
T Consensus       129 ~~l~~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~-i~D~a~~~g~---~~~-~~~~---~~~di~~~s~  197 (382)
T 4eb5_A          129 SFIDQKLRDDTILVSVQHANNEIGTIQP---VEEISEVLAGKAAL-HIDATASVGQ---IEV-DVEK---IGADMLTISS  197 (382)
T ss_dssp             HHHHHHCCTTEEEEECCSBCTTTCBBCC---HHHHHHHHTTSSEE-EEECTTTBTT---BCC-CHHH---HTCSEEEEET
T ss_pred             HHHHHHhcCCCeEEEEeccCCCccccCC---HHHHHHHHHHCCCE-EEEcchhcCC---ccc-Cccc---cCCCEEEeeh
Confidence            4455555543    88999999999998   78999999999999 9999998321   111 1211   2345889999


Q ss_pred             ccccccCCceEEEEEeeCCCCCcchhhHHHHH-HHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSI-KIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDR  156 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  156 (246)
                      ||.++.+|  +||+++++.....   ...... ........+.+...+.++..++... ..++++.++.++++++.+.+.
T Consensus       198 sK~~g~~g--~G~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~-~~~~~~~~~~~~~~~~~l~~~  271 (382)
T 4eb5_A          198 NDIYGPKG--VGALWIRKEAKLQ---PVILGGGQENGLRSGSENVPSIVGFGKAAEIT-AMEWREEAERLRRLRDRIIDN  271 (382)
T ss_dssp             GGGTCCSS--CEEEEEETTCCCC---CSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCc--eEEEEEccccccC---ceecCCCccccccCCCccHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHH
Confidence            99977666  7999998731000   000000 0001112245666667666676632 346788889999999999999


Q ss_pred             hhcCCCCccccCCCC---ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC-------------------C
Q 042445          157 LKEIPCITCPKKPEG---SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-------------------K  214 (246)
Q Consensus       157 L~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-------------------~  214 (246)
                      |++++++.. ..|.+   +.+++++++..      +..++ .+.|.++||.+.+|..|..                   +
T Consensus       272 L~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~~-~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~  343 (382)
T 4eb5_A          272 VLKIEESYL-NGHPEKRLPNNVNVRFSYI------EGESI-VLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAH  343 (382)
T ss_dssp             HTTSTTEEE-CSCSSSBCTTEEEEEETTS------CHHHH-HHHHHHHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHT
T ss_pred             HhhCCCeEE-eCCcccCCCCEEEEEeCCc------CHHHH-HHHHHHCCEEEeccccccCCCCcccHHHHHcCCChhccC
Confidence            998877763 34432   55677777521      24444 4556688999999876432                   4


Q ss_pred             CeEEEEeec--ChHHHHHHHHHHHHHHHHHhh
Q 042445          215 DWLRITFAV--EPSALENGLGRMKAFYDRHAE  244 (246)
Q Consensus       215 ~~iRls~~~--~~~~l~~~~~~l~~~~~~~~~  244 (246)
                      +++|++++.  +++++++++++|.+++++..+
T Consensus       344 ~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~  375 (382)
T 4eb5_A          344 GTLLLTLGRYNTDEDVDRLLEVLPGVIERLRS  375 (382)
T ss_dssp             TEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            799999993  899999999999999887654

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=99.89  E-value=4.6e-22  Score=168.94  Aligned_cols=216  Identities=7%  Similarity=-0.072  Sum_probs=155.0

Q ss_pred             hhhhhhhcc-c----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcc
Q 042445            2 ELINQDITR-E----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGS   76 (246)
Q Consensus         2 e~~~~~~~~-~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s   76 (246)
                      |.+++.+++ +    ++++||||||.+.+   +++|.++|++||+++|+||+++.....   . .   +...+..+++.|
T Consensus       128 ~~l~~~i~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~~---~-~---~~~~~~d~~~~s  197 (411)
T 3nnk_A          128 DQVEDAVKRIRPRLLLTVQGDTSTTMLQP---LAELGEICRRYDALFYTDATASLGGNP---L-E---TDVWGLDAVSAG  197 (411)
T ss_dssp             HHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHHHHHHHTCEEEEECTTTBTTBC---C-C---TTTTTCSEEECC
T ss_pred             HHHHHHHhhCCCeEEEEeCCCCCcceecc---HHHHHHHHHHcCCEEEEECCcccCCcc---c-c---hhccCCcEEEec
Confidence            455666653 2    88899999999988   678889999999999999998753221   1 1   112234588999


Q ss_pred             cccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHh------------------------------------h-hcCCC
Q 042445           77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFL------------------------------------N-ISSDP  119 (246)
Q Consensus        77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~------------------------------------~-~~~~~  119 (246)
                      ++|.+++ +.++||+++++        ++++.+....                                    . ...+.
T Consensus       198 ~~K~l~~-~~g~g~~~~~~--------~~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (411)
T 3nnk_A          198 MQKCLGG-PSGTSPITLSA--------RMEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTE  268 (411)
T ss_dssp             STTTTCC-CSSEEEEEECH--------HHHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCC
T ss_pred             CccccCC-CCceEEEEECH--------HHHHHHhhcccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCC
Confidence            9997432 23589999998        8888876532                                    0 11245


Q ss_pred             CchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCC---CceEEEEEeccccccCCCChHHHHHH
Q 042445          120 ATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPE---GSMFVMVKLNYSLLEGINSDMEFALK  196 (246)
Q Consensus       120 ~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~  196 (246)
                      +...+.++..++....+..+++.++.++++++.+.+.|+++ ++.. ..+.   .++++++.++...     +..++...
T Consensus       269 ~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~  341 (411)
T 3nnk_A          269 ATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQAM-GLET-FGDLKHKMNNVLGVVIPQGI-----NGDQARKL  341 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCB-CSCGGGBCSSEEEEECCTTC-----CHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCEe-CCCcccccccEEEEECCCCC-----CHHHHHHH
Confidence            67777777777764223337888999999999999999987 6663 3333   3678888775332     35555555


Q ss_pred             HHHhcCeEEecCCCcCCCCeEEEEe-ec--ChHHHHHHHHHHHHHHHHHh
Q 042445          197 LAKEESVIVLPGITVGLKDWLRITF-AV--EPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       197 ll~~~gi~v~pg~~f~~~~~iRls~-~~--~~~~l~~~~~~l~~~~~~~~  243 (246)
                      +++++||.+.||.....++++|+++ +.  +++++++++++|++++++..
T Consensus       342 l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~  391 (411)
T 3nnk_A          342 MLEDFGIEIGTSFGPLHGKVWRIGTMGYNARKDCVMTTLSALEAVLNYLK  391 (411)
T ss_dssp             HHHHHSEEEEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHhcCeEEeCccCCCCCCEEEEeCccCcCCHHHHHHHHHHHHHHHHHcC
Confidence            5556699999986554578999998 53  78999999999999998654

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=99.89  E-value=1.9e-22  Score=172.07  Aligned_cols=212  Identities=13%  Similarity=0.086  Sum_probs=149.3

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.++++    ++++|+||||.+++   +++|.++|++||+++|+||+|+.....    ...   ...+..+++.|+
T Consensus       154 ~~l~~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~~----~~~---~~~~~di~~~s~  223 (423)
T 3lvm_A          154 KELEAAMRDDTILVSIMHVNNEIGVVQD---IAAIGEMCRARGIIYHVDATQSVGKLP----IDL---SQLKVDLMSFSG  223 (423)
T ss_dssp             HHHHHHCCTTEEEEECCSBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTTTTSC----CCT---TTSCCSEEEEES
T ss_pred             HHHHHhcCCCcEEEEEeCCCCCCccccC---HHHHHHHHHHcCCEEEEEhhhhcCCCC----cCh---hhcCCCEEEech
Confidence            4555656544    88899999999999   788999999999999999998753321    111   122345889999


Q ss_pred             ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHh--------hhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFL--------NISSDPATFIQGAVPQILEKTEEEFFSKIIDILRET  149 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~--------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~  149 (246)
                      ||.++.+|  +||+++++        +..+.+....        ....+.+...+.++..++.. ...++++.++.++++
T Consensus       224 sK~~g~~g--~G~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~-~~~~~~~~~~~~~~~  292 (423)
T 3lvm_A          224 HKIYGPKG--IGALYVRR--------KPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRI-AKEEMATEMERLRGL  292 (423)
T ss_dssp             TTTTSCSS--CEEEEECB--------TTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred             HHhcCCCC--eEEEEEec--------cccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            99987777  89999987        4333333221        11225567777777677663 234488899999999


Q ss_pred             HHHHHHHhhcCCCCccccCCCC---ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC-------------
Q 042445          150 ADKCCDRLKEIPCITCPKKPEG---SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-------------  213 (246)
Q Consensus       150 ~~~l~~~L~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-------------  213 (246)
                      ++.+.+.|++++++..+ .+.+   +.++++.++..       +.+.+...|.+  |.+.+|..|..             
T Consensus       293 ~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~~-------~~~~l~~~l~~--i~v~~g~~~~~~~~~~~~~~~~~g  362 (423)
T 3lvm_A          293 RNRLWNGIKDIEEVYLN-GDLEHGAPNILNVSFNYV-------EGESLIMALKD--LAVSSGSACTSASLEPSYVLRALG  362 (423)
T ss_dssp             HHHHHHHHTTSTTEEEE-SCSTTBCTTEEEEEETTS-------CHHHHHHHTTT--EECBCCCC-----CCCCHHHHHHT
T ss_pred             HHHHHHHHhcCCCEEEe-CCccccCCCeEEEEeCCC-------CHHHHHHHHhh--heeccCccccCCCccccHHHHHhC
Confidence            99999999988887743 3332   34555556432       33444555655  98999876543             


Q ss_pred             ------CCeEEEEeec--ChHHHHHHHHHHHHHHHHHhh
Q 042445          214 ------KDWLRITFAV--EPSALENGLGRMKAFYDRHAE  244 (246)
Q Consensus       214 ------~~~iRls~~~--~~~~l~~~~~~l~~~~~~~~~  244 (246)
                            .+++|++++.  ++++++++++.|.+++++..+
T Consensus       363 ~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~~~~~~~  401 (423)
T 3lvm_A          363 LNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRD  401 (423)
T ss_dssp             CCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCccccCceEEEECCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence                  3899999994  789999999999999987654

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=99.89  E-value=1e-22  Score=175.44  Aligned_cols=207  Identities=14%  Similarity=0.074  Sum_probs=145.4

Q ss_pred             cccCCc-CCCcc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCC-ceE
Q 042445           12 FSDFQV-FHVGS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPG-LRL   88 (246)
Q Consensus        12 ~~~~p~-NPtG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g-~r~   88 (246)
                      ++++|+ ||||. +.+.+++++|.++|++||+++|+||+|.++...+..+ .+..++...+++   |+||.+++ | +|+
T Consensus       223 vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~-~~~~~~~~~di~---s~sK~l~~-G~~~~  297 (449)
T 3a8u_X          223 VFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSMF-GADSFGVTPDLM---CIAKQVTN-GAIPM  297 (449)
T ss_dssp             EEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-HHHHHTCCCSEE---EECGGGGT-TSSCC
T ss_pred             EEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCcch-hhhhcCCCCCEE---EEcccccC-CCCce
Confidence            666675 57996 6679999999999999999999999998776554322 222222222333   89999874 7 999


Q ss_pred             EEEEeeCCCCCcchhhHHHHHHHH----------hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhh
Q 042445           89 GWLVTSDPNGILQDSGIVDSIKIF----------LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLK  158 (246)
Q Consensus        89 G~i~~~~~~~~~~~~~~~~~l~~~----------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~  158 (246)
                      ||+++++        ++++.+...          ...+++.|++++.++.++++...+   +...+.++++++.+.+.|+
T Consensus       298 G~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~---~~~~~~~~~~~~~l~~~L~  366 (449)
T 3a8u_X          298 GAVIAST--------EIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQK---ENLVQSVAEVAPHFEKALH  366 (449)
T ss_dssp             EEEEEEH--------HHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECH--------HHHHHhhccCcccccccccccCCCcccHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHH
Confidence            9999988        888888753          123447799999998888874222   2456667777888888887


Q ss_pred             cCCCCccc-cCCCCceEEEEEeccccccCCC--ChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHH
Q 042445          159 EIPCITCP-KKPEGSMFVMVKLNYSLLEGIN--SDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLG  233 (246)
Q Consensus       159 ~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~  233 (246)
                      +++.+..+ ..+..|+++|++++....  ..  +..++ ...|.++||.+.|+.     +++|+++.  .++++++++++
T Consensus       367 ~l~~~~~~~~~~~~g~~~~i~~~~~~~--~~~~~~~~~-~~~l~~~Gv~v~~~g-----~~iRis~~~~~t~~~i~~~l~  438 (449)
T 3a8u_X          367 GIKGAKNVIDIRNFGLAGAIQIAPRDG--DAIVRPFEA-GMALWKAGFYVRFGG-----DTLQFGPTFNSKPQDLDRLFD  438 (449)
T ss_dssp             TTTTSTTEEEEEEETTEEEEEECCBTT--BSSHHHHHH-HHHHHHHTEECEEET-----TEEEECCCTTCCHHHHHHHHH
T ss_pred             HHhcCCCeEEEeeeEEEEEEEEecCcc--cccccHHHH-HHHHHHCCcEEecCC-----CEEEEECCCcCCHHHHHHHHH
Confidence            65322211 123457889988864310  00  01134 445557899999962     78999965  49999999999


Q ss_pred             HHHHHHHHH
Q 042445          234 RMKAFYDRH  242 (246)
Q Consensus       234 ~l~~~~~~~  242 (246)
                      +|.+++++.
T Consensus       439 ~l~~~l~~~  447 (449)
T 3a8u_X          439 AVGEVLNKL  447 (449)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHH
Confidence            999998764

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=99.89  E-value=3.4e-22  Score=168.59  Aligned_cols=210  Identities=13%  Similarity=0.004  Sum_probs=144.9

Q ss_pred             hhhhhhhcc-c----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCC-cc------ccccCCcc
Q 042445            2 ELINQDITR-E----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPF-VS------MGVFGSIV   69 (246)
Q Consensus         2 e~~~~~~~~-~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~-~~------~~~~~~~~   69 (246)
                      +.+++.+++ +    ++++|+||||.+.+   +++|.++|++||+++|+||+|+.+.++..+. ..      ...+.. +
T Consensus       161 ~~l~~~i~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~  236 (397)
T 3f9t_A          161 KFVKDAVEDYDVDGIIGIAGTTELGTIDN---IEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-G  236 (397)
T ss_dssp             HHHHHHHHHSCCCEEEEEBSCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-T
T ss_pred             HHHHHHHhhcCCeEEEEECCCCCCCCCCC---HHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccc-c
Confidence            455565655 3    78899999999976   8889999999999999999999765432110 00      111112 3


Q ss_pred             cEEEEcccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhc---------C---CCCchHHHHHHHHHhhchHH
Q 042445           70 PLLTLGSISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNIS---------S---DPATFIQGAVPQILEKTEEE  137 (246)
Q Consensus        70 ~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~---------~---~~~~~~q~~~~~~l~~~~~~  137 (246)
                      ..+++.|++|. +++|.|+||+++++.       .+.+.+.......         .   +.+...+.++...+.   ..
T Consensus       237 ~~~~~~s~~K~-~~~~~~~g~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~---~~  305 (397)
T 3f9t_A          237 VDSITIDPHKM-GHCPIPSGGILFKDI-------GYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRYLG---RE  305 (397)
T ss_dssp             CSEEECCTTTT-TCCCSSCEEEEESSG-------GGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHH---HH
T ss_pred             CCeEEEccccc-cCCCCCceEEEEeCH-------HHHHhhccCCccccCCCccccccccccchHHHHHHHHHHHh---HH
Confidence            45888999997 567789999999773       3444332221111         0   123445555544443   45


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeE
Q 042445          138 FFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWL  217 (246)
Q Consensus       138 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~i  217 (246)
                      .+++..+.++++++.+.+.|+++ ++.. ..+..+.+++++++.        . +.+.+.|.++||.+.++..   ++++
T Consensus       306 ~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~~~~~~~~~~~~--------~-~~~~~~l~~~gi~v~~~~~---~~~~  371 (397)
T 3f9t_A          306 GQRKIVNECMENTLYLYKKLKEN-NFKP-VIEPILNIVAIEDED--------Y-KEVCKKLRDRGIYVSVCNC---VKAL  371 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHT-TCCB-SSCCSSSEEEEECTT--------H-HHHHHHHHHTTCBCEECSS---SSEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHC-CCEE-EcCCCccEEEEEeCC--------H-HHHHHHHHhCCeEEeccCC---CCEE
Confidence            57777888889999999999988 7763 344556667766542        3 3445566778999999764   6899


Q ss_pred             EEEeec--ChHHHHHHHHHHHHHHH
Q 042445          218 RITFAV--EPSALENGLGRMKAFYD  240 (246)
Q Consensus       218 Rls~~~--~~~~l~~~~~~l~~~~~  240 (246)
                      |++++.  +++++++++++|.++++
T Consensus       372 Ri~~~~~~~~e~i~~~~~~l~~~l~  396 (397)
T 3f9t_A          372 RIVVMPHIKREHIDNFIEILNSIKR  396 (397)
T ss_dssp             EEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred             EEEEcCCCCHHHHHHHHHHHHHhhC
Confidence            999994  89999999999998764

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=99.89  E-value=1.8e-22  Score=173.86  Aligned_cols=211  Identities=15%  Similarity=0.057  Sum_probs=143.2

Q ss_pred             cccCC-c-CCCc-cCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCC-ce
Q 042445           12 FSDFQ-V-FHVG-SGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPG-LR   87 (246)
Q Consensus        12 ~~~~p-~-NPtG-~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g-~r   87 (246)
                      +++.| + ||+| .+++.+++++|.++|++||+++|+||+|.++...+..+ ....++-...   +.+|||.+++ | +|
T Consensus       214 vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~-a~~~~~~~~d---i~t~sK~l~~-G~~~  288 (448)
T 3dod_A          214 LSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMF-ACEHENVQPD---LMAAGKGITG-GYLP  288 (448)
T ss_dssp             EEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS-GGGGGTCCCS---EEEECGGGGT-TSSC
T ss_pred             EEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccchh-hhhhcCCCCC---EEEecccccC-CcCc
Confidence            55555 3 6676 56678889999999999999999999999887666433 2222222222   4478999865 8 59


Q ss_pred             EEEEEeeCCCCCcchhhHHHHHHH-------H-hhhcCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhh
Q 042445           88 LGWLVTSDPNGILQDSGIVDSIKI-------F-LNISSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADKCCDRLK  158 (246)
Q Consensus        88 ~G~i~~~~~~~~~~~~~~~~~l~~-------~-~~~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~  158 (246)
                      +||+++++        ++++.+..       . ...+++.|+++++++.++|+... +..+++.++..+..++.+.+ ++
T Consensus       289 ig~v~~~~--------~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~-l~  359 (448)
T 3dod_A          289 IAVTFATE--------DIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQD-LH  359 (448)
T ss_dssp             CEEEEEEH--------HHHHTTCSCGGGCCCCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH-HT
T ss_pred             eEEEEECH--------HHHHHhhhccccCCcccccCCCCcCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH-Hh
Confidence            99999998        88888865       2 23445889999999999998432 23344444444444555555 55


Q ss_pred             cCCCCccccCCCCceEEEEEeccccc--cCCCCh---HHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHH
Q 042445          159 EIPCITCPKKPEGSMFVMVKLNYSLL--EGINSD---MEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENG  231 (246)
Q Consensus       159 ~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~---~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~  231 (246)
                      +++.+..  .+..|.++|+.+....-  ......   ...+...+.++||.+.|+     .+++|+++.  .++++++++
T Consensus       360 ~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~-----~~~iRi~~~~~~t~e~i~~~  432 (448)
T 3dod_A          360 ALPHVGD--IRQLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMRELGMLTRPL-----GDVIAFLPPLASTAEELSEM  432 (448)
T ss_dssp             TSTTEEE--EEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECCEE-----TTEEEECCCTTCCHHHHHHH
T ss_pred             cCCCeEE--EEeeeEEEEEEEccCcccccccchhhHHHHHHHHHHHHCCcEEecc-----CCEEEEECCCCCCHHHHHHH
Confidence            5543331  22346788887764310  000000   233455566889999986     279999765  499999999


Q ss_pred             HHHHHHHHHHHh
Q 042445          232 LGRMKAFYDRHA  243 (246)
Q Consensus       232 ~~~l~~~~~~~~  243 (246)
                      +++|.+++++..
T Consensus       433 l~~l~~~l~~~~  444 (448)
T 3dod_A          433 VAIMKQAIHEVT  444 (448)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999998764

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=99.89  E-value=1.7e-22  Score=175.24  Aligned_cols=210  Identities=18%  Similarity=0.159  Sum_probs=145.4

Q ss_pred             cccCCcCCCcc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCcccc-ccCCcccEEEEcccccccccCC-ceE
Q 042445           12 FSDFQVFHVGS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMG-VFGSIVPLLTLGSISKRGIVPG-LRL   88 (246)
Q Consensus        12 ~~~~p~NPtG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~-~~~~~~~~i~~~s~sK~~~~~g-~r~   88 (246)
                      +++.++|++|. +++++++++|.++|++||+++|+||+|.++...|..+ ... .++-..+++   ++||.+++ | +|+
T Consensus       226 i~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G~~~-~~~~~~~v~pdi~---t~sK~l~~-G~~pl  300 (476)
T 3i5t_A          226 LAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWF-ASEKVFGVVPDII---TFAKGVTS-GYVPL  300 (476)
T ss_dssp             EECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSC-HHHHTTCCCCSEE---EECGGGGT-TSSCC
T ss_pred             EECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccccCce-eeecccCCCcchh---hhhhhhcC-CCcCe
Confidence            55555667775 8899999999999999999999999999987776432 222 232222333   68899865 8 999


Q ss_pred             EEEEeeCCCCCcchhhHHHHHHHH--------hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcC
Q 042445           89 GWLVTSDPNGILQDSGIVDSIKIF--------LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEI  160 (246)
Q Consensus        89 G~i~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  160 (246)
                      |++++++        ++++.+...        ...+++.|+++++++.++|+...+   +...+.++++.+.+.+.|+++
T Consensus       301 g~v~~~~--------~i~~~~~~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~---~~~~~~~~~~~~~l~~~L~~l  369 (476)
T 3i5t_A          301 GGLAISE--------AVLARISGENAKGSWFTNGYTYSNQPVACAAALANIELMER---EGIVDQAREMADYFAAALASL  369 (476)
T ss_dssp             EEEEECH--------HHHHTTSGGGCTTCEECCCCTTTTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEEECH--------HHHHHHhcCCcccccccccCCCCcCHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHH
Confidence            9999988        888888653        224558899999999999984322   334555666666666666653


Q ss_pred             ---CCCccccCCCCceEEEEEeccccc--cCCCC---hHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHH
Q 042445          161 ---PCITCPKKPEGSMFVMVKLNYSLL--EGINS---DMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEN  230 (246)
Q Consensus       161 ---~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~---~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~  230 (246)
                         +.+. .+. ..|.++++++.....  .....   ....+...+.++||.+.|..     +++||++.  .+++++++
T Consensus       370 ~~~~~v~-~v~-~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g-----~~iRi~p~l~~t~e~i~~  442 (476)
T 3i5t_A          370 RDLPGVA-ETR-SVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFELGLIVRPLG-----DLCVISPPLIISRAQIDE  442 (476)
T ss_dssp             TTSTTEE-EEE-EETTEEEEEECCC-----CCHHHHHHHHHHHHHHHHTTEECEEET-----TEEEECCCTTCCHHHHHH
T ss_pred             hcCCCeE-EEE-ecCceeEEEEecCccccccccchhHHHHHHHHHHHHCCCEEEecC-----CEEEEECCCCCCHHHHHH
Confidence               3333 223 345666777754210  00000   13345556678899999832     89999955  59999999


Q ss_pred             HHHHHHHHHHHHhh
Q 042445          231 GLGRMKAFYDRHAE  244 (246)
Q Consensus       231 ~~~~l~~~~~~~~~  244 (246)
                      ++++|.+++++..+
T Consensus       443 ~l~~l~~~l~~~~~  456 (476)
T 3i5t_A          443 MVAIMRQAITEVSA  456 (476)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999987664

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=99.89  E-value=4.7e-23  Score=176.55  Aligned_cols=207  Identities=12%  Similarity=0.040  Sum_probs=141.3

Q ss_pred             cccCCcCC-Ccc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEE
Q 042445           12 FSDFQVFH-VGS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLG   89 (246)
Q Consensus        12 ~~~~p~NP-tG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G   89 (246)
                      ++++|+|| +|. ..+.+++++|.++|++||+++|+||+|.++ ..+..+ ....++..   ..+.||||.|++ |+|+|
T Consensus       204 vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~~-~~~~~~~~---~di~t~sK~~~~-G~~iG  277 (429)
T 3k28_A          204 VIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVAYNC-GQGYYGVT---PDLTCLGKVIGG-GLPVG  277 (429)
T ss_dssp             EEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT-TSSTTH-HHHHHTCC---CSEEEECGGGGT-TSCCE
T ss_pred             EEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcch-HHHHhCCC---CceehhhhhhcC-CCCeE
Confidence            55666554 444 446788999999999999999999999988 554322 22222222   224579999864 99999


Q ss_pred             EEEeeCCCCCcchhhHHHHHHHH----hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc----CC
Q 042445           90 WLVTSDPNGILQDSGIVDSIKIF----LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKE----IP  161 (246)
Q Consensus        90 ~i~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~  161 (246)
                      |+++++        ++++.+...    ...+++.|++++.++.++++...    ++..+.++++++.+.+.|++    .+
T Consensus       278 ~~~~~~--------~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~----~~~~~~~~~~~~~l~~~L~~~~~~~~  345 (429)
T 3k28_A          278 AYGGKA--------EIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLT----PESYVEFERKAEMLEAGLRKAAEKHG  345 (429)
T ss_dssp             EEEECH--------HHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC----HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEEcH--------HHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            999988        888877542    22344789999999999998543    45556666666666666654    33


Q ss_pred             CCccccCCCCceEEEEEeccccccC-----CC--ChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHH
Q 042445          162 CITCPKKPEGSMFVMVKLNYSLLEG-----IN--SDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGR  234 (246)
Q Consensus       162 ~~~~~~~~~~g~~~~~~~~~~~~~~-----~~--~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~  234 (246)
                      .+. . .+..|.++++.+......+     .+  .....+.+.+.++||.+.|+.    .+.+|+++..+++++++++++
T Consensus       346 ~~~-~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----~~~~r~~~~~t~e~i~~~l~~  419 (429)
T 3k28_A          346 IPH-H-INRAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQGVFLPPSQ----FEGLFLSTVHSDADIEATIAA  419 (429)
T ss_dssp             CCC-E-EEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSST----TSCBCCCTTCCHHHHHHHHHH
T ss_pred             CCE-E-EEeeccEEEEEEecCCcccccccccccHHHHHHHHHHHHHCCeEEecCC----CCCEEEECCCCHHHHHHHHHH
Confidence            332 2 2344666666664321000     00  012444556778999999874    467899887799999999999


Q ss_pred             HHHHHHHH
Q 042445          235 MKAFYDRH  242 (246)
Q Consensus       235 l~~~~~~~  242 (246)
                      |.+++++.
T Consensus       420 l~~~l~~~  427 (429)
T 3k28_A          420 AEIAMSKL  427 (429)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHHH
Confidence            99998765

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=99.89  E-value=6.5e-22  Score=166.07  Aligned_cols=218  Identities=13%  Similarity=0.024  Sum_probs=147.6

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      |.+++.++++    ++++||||||.+.+   +++|.++|++||+ +|+|++|+.....    ..+.   ..+..+++.|+
T Consensus       129 ~~l~~~i~~~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~-li~D~a~~~~~~~----~~~~---~~~~d~~~~s~  197 (382)
T 4hvk_A          129 SFIDQKLRDDTILVSVQHANNEIGTIQP---VEEISEVLAGKAA-LHIDATASVGQIE----VDVE---KIGADMLTISS  197 (382)
T ss_dssp             HHHHHHCCTTEEEEECCSBCTTTCBBCC---HHHHHHHHSSSSE-EEEECTTTBTTBC----CCHH---HHTCSEEEEES
T ss_pred             HHHHHHhccCceEEEEECCCCCceeeCC---HHHHHHHHHHcCE-EEEEhHHhcCCCC----CCch---hcCCCEEEEeH
Confidence            4556666544    88999999999988   7789999999999 9999998743221    1111   11245889999


Q ss_pred             ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDR  156 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  156 (246)
                      ||.+|.+|  +|++++++.....   ........... .....+...+.++..++.. ...++++.++.++++++.+.+.
T Consensus       198 ~K~~g~~g--~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~~~~~~~~~~~~~~~~~~l~~~  271 (382)
T 4hvk_A          198 NDIYGPKG--VGALWIRKEAKLQ---PVILGGGQENGLRSGSENVPSIVGFGKAAEI-TAMEWREEAERLRRLRDRIIDN  271 (382)
T ss_dssp             GGGTSCTT--CEEEEEETTCCCC---CSSCSSCTGGGTSCSCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCc--eEEEEEcCccCcC---cccccCCCcCccccCCcCHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHH
Confidence            99877666  7888887631000   00000000001 1224567777777777763 3467889999999999999999


Q ss_pred             hhcCCCCccccCCCC---ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC-------------------C
Q 042445          157 LKEIPCITCPKKPEG---SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-------------------K  214 (246)
Q Consensus       157 L~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-------------------~  214 (246)
                      |++++++.. ..+.+   +.++++.++..       +.+.+.+.|.++||.+.+|..|..                   +
T Consensus       272 L~~~~~~~~-~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~  343 (382)
T 4hvk_A          272 VLKIEESYL-NGHPEKRLPNNVNVRFSYI-------EGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAH  343 (382)
T ss_dssp             HTTSTTEEE-CSCSSSBCTTEEEEEETTC-------CHHHHHHHHHHTTCBCBCC--------CCCHHHHHTTCCHHHHH
T ss_pred             HhcCCCeEE-eCCccccCCCEEEEEECCC-------CHHHHHHHHHHCCEEEeeCCccCCCCCcchHHHHHcCCChhhcC
Confidence            999888764 33332   34666666432       334455677888999999977653                   4


Q ss_pred             CeEEEEeec--ChHHHHHHHHHHHHHHHHHhh
Q 042445          215 DWLRITFAV--EPSALENGLGRMKAFYDRHAE  244 (246)
Q Consensus       215 ~~iRls~~~--~~~~l~~~~~~l~~~~~~~~~  244 (246)
                      +++|++++.  ++++++++++.|++++++..+
T Consensus       344 ~~iRl~~~~~~t~e~i~~~~~~l~~~~~~~~~  375 (382)
T 4hvk_A          344 GTLLLTLGRYNTDEDVDRLLEVLPGVIERLRS  375 (382)
T ss_dssp             TEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            789999994  789999999999999987654

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=99.89  E-value=2.7e-22  Score=173.23  Aligned_cols=204  Identities=11%  Similarity=0.072  Sum_probs=144.3

Q ss_pred             cccC-CcCCCccCC-ChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEE
Q 042445           12 FSDF-QVFHVGSGF-SGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLG   89 (246)
Q Consensus        12 ~~~~-p~NPtG~~~-~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G   89 (246)
                      +++. ++||+|.++ +.+++++|.++|++||+++|+||+|.++...+..+ ....++...+++   ||||.+++..+|+|
T Consensus       238 i~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~~~-a~~~~~~~pdii---t~sK~l~gG~~~lG  313 (457)
T 3tfu_A          238 VVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALF-AADHAGVSPDIM---CVGKALTGGYLSLA  313 (457)
T ss_dssp             EECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-THHHHTCCCSEE---EECGGGGTTSSCCE
T ss_pred             EEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccchh-HhHhcCCCceEE---EEChhhhCCCcceE
Confidence            4545 589999876 77889999999999999999999999987666432 222333222333   89998754337999


Q ss_pred             EEEeeCCCCCcchhhHHHHHHHH------hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcC---
Q 042445           90 WLVTSDPNGILQDSGIVDSIKIF------LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEI---  160 (246)
Q Consensus        90 ~i~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---  160 (246)
                      |+++++        ++++.+...      ...+++.|+++++++.++|+...+   +...+.++++.+.+.+.|+++   
T Consensus       314 ~v~~~~--------~i~~~~~~~~~~~~~~~~t~~~n~~a~aaa~aaL~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~  382 (457)
T 3tfu_A          314 ATLCTA--------DVAHTISAGAAGALMHGPTFMANPLACAVSVASVELLLG---QDWRTRITELAAGLTAGLDTARAL  382 (457)
T ss_dssp             EEEEEH--------HHHHHHHHSSSCSCCCCCTTTTCHHHHHHHHHHHHHHHT---SCHHHHHHHHHHHHHHHHGGGGGS
T ss_pred             EEEEcH--------HHHHHhhccCCCceeEecCCCcCHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999998        999988521      223458899999999998874221   234455566666667666653   


Q ss_pred             CCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHH
Q 042445          161 PCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAF  238 (246)
Q Consensus       161 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~  238 (246)
                      +++.. + +..|++++++++...      +...+.+.|.++||.+.|.     .+++|+++.  .+++++++++++|+++
T Consensus       383 ~~v~~-v-r~~G~~~~i~l~~~~------~~~~~~~~l~~~Gv~v~~~-----~~~lRi~p~~~~t~eei~~~l~~L~~~  449 (457)
T 3tfu_A          383 PAVTD-V-RVCGAIGVIECDRPV------DLAVATPAALDRGVWLRPF-----RNLVYAMPPYICTPAEITQITSAMVEV  449 (457)
T ss_dssp             TTEEE-E-EECSSCEEEEESSCC------CHHHHHHHHHHTTEECCCB-----TTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred             CCeee-e-ecCCeEEEEEECCcc------cHHHHHHHHHHCCeEEEec-----CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            34432 2 234678888886432      3344455666789999873     378999866  3899999999999999


Q ss_pred             HHHHh
Q 042445          239 YDRHA  243 (246)
Q Consensus       239 ~~~~~  243 (246)
                      +++..
T Consensus       450 l~~~~  454 (457)
T 3tfu_A          450 ARLVG  454 (457)
T ss_dssp             HHHC-
T ss_pred             HHHhc
Confidence            98654

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=99.88  E-value=1.1e-23  Score=176.57  Aligned_cols=196  Identities=13%  Similarity=0.109  Sum_probs=141.9

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      ++++|+||||.+++   +++|.++|++||+++|+||+|+.+...   . .+..++   ..+++.|+||.+++++ |+||+
T Consensus       152 ~~~~~~nptG~~~~---~~~i~~~~~~~~~~li~D~a~~~~~~~---~-~~~~~~---~di~~~s~sK~~~~~~-~~G~~  220 (371)
T 2e7j_A          152 LITYPDGNYGNLPD---VKKIAKVCSEYDVPLLVNGAYAIGRMP---V-SLKEIG---ADFIVGSGHKSMAASG-PIGVM  220 (371)
T ss_dssp             EEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTTBTTBC---C-CHHHHT---CSEEEEEHHHHSSCCS-SCEEE
T ss_pred             EEECCCCCCcccCC---HHHHHHHHHHcCCeEEEECccccCCCC---C-ChhhcC---CCEEEecCCcCCCCCC-CcEEE
Confidence            88999999999998   689999999999999999999986532   1 222222   3489999999877654 99999


Q ss_pred             EeeCCCCCcchhhHHHH-HHHHhh---h-----cCCCCchHHHHHHHHHhhchHHHHHHHHHHH--HHHHHHHHHHhhcC
Q 042445           92 VTSDPNGILQDSGIVDS-IKIFLN---I-----SSDPATFIQGAVPQILEKTEEEFFSKIIDIL--RETADKCCDRLKEI  160 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~-l~~~~~---~-----~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~--~~~~~~l~~~L~~~  160 (246)
                      ++++        ++++. +.....   .     ....++..+.++..+++....    +..+.+  +++++.+.+.|+++
T Consensus       221 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~  288 (371)
T 2e7j_A          221 GMKE--------EWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRE----RIKRWDEEVEKARRFAAEMEKL  288 (371)
T ss_dssp             EECT--------TTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHH----HGGGHHHHHHHHHHHHHHHHHT
T ss_pred             EEec--------hhhhhhccccccCcccccccccCCcCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHc
Confidence            9998        55555 443321   1     224566666666666653111    566677  88889999999887


Q ss_pred             CCCccccCCC--CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC------CCeEE-EEee---cChHHH
Q 042445          161 PCITCPKKPE--GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL------KDWLR-ITFA---VEPSAL  228 (246)
Q Consensus       161 ~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~------~~~iR-ls~~---~~~~~l  228 (246)
                       ++.. ..|.  .+.++|++++ .       ..++ .+.|.++||.+.| ..+..      ++++| ++++   .+++++
T Consensus       289 -~~~~-~~~~~~~~~~~~~~~~-~-------~~~~-~~~l~~~gi~~~~-~~~~~~~~g~~~~~iRii~~~~~~~~~~~i  356 (371)
T 2e7j_A          289 -GIKQ-LGDNPHNHDLMFFHAE-V-------LYEI-SKKAKGGRFFLYR-ELKSRKIHGIKPGLTRYFKLSTYGLSDEEV  356 (371)
T ss_dssp             -TCEE-ESSSSCCSSEEEEECH-H-------HHHH-HHHSSSGGGHHHH-HHHHTTEECSCTTCCSEEEEECTTCCHHHH
T ss_pred             -CcEE-ecCCCccCceEEEECC-C-------HHHH-HHHHHHCCEEEEe-ccccccccCCCCCceEEEEeeccCCCHHHH
Confidence             6663 3343  4668888775 1       3444 4556689999988 44322      68999 9999   589999


Q ss_pred             HHHHHHHHHHHHHH
Q 042445          229 ENGLGRMKAFYDRH  242 (246)
Q Consensus       229 ~~~~~~l~~~~~~~  242 (246)
                      ++++++|.++++++
T Consensus       357 ~~~~~~l~~~~~~~  370 (371)
T 2e7j_A          357 DYVLNAFKEIIEKY  370 (371)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999998754

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=99.88  E-value=3.5e-22  Score=171.67  Aligned_cols=215  Identities=11%  Similarity=0.059  Sum_probs=151.6

Q ss_pred             hhhhhhhc-cc---cccCCc-CCCcc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEc
Q 042445            2 ELINQDIT-RE---FSDFQV-FHVGS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLG   75 (246)
Q Consensus         2 e~~~~~~~-~~---~~~~p~-NPtG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~   75 (246)
                      |.+++.++ ++   ++.+|+ ||+|. +++.+++++|.++|++||+++|+||+|.++...+..+ .....+...++   .
T Consensus       213 ~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~-~~~~~~~~~Di---~  288 (439)
T 2oat_A          213 PALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWL-AVDYENVRPDI---V  288 (439)
T ss_dssp             HHHHHHTTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS-GGGGGTCCCSE---E
T ss_pred             HHHHHHhCCCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcch-hHHHhCCCCcE---E
Confidence            45555553 32   555664 56896 5789999999999999999999999998876655332 22222222233   2


Q ss_pred             ccccccccCC-ceEEEEEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 042445           76 SISKRGIVPG-LRLGWLVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKC  153 (246)
Q Consensus        76 s~sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l  153 (246)
                      |+||.++ +| +|+||+++++        ++++.+... ...+++.|++++.++.++++...+   +...+.++++++.+
T Consensus       289 t~sK~l~-~G~~~~G~v~~~~--------~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l  356 (439)
T 2oat_A          289 LLGKALS-GGLYPVSAVLCDD--------DIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEE---ENLAENADKLGIIL  356 (439)
T ss_dssp             EECGGGG-TTSSCCEEEEECH--------HHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHH
T ss_pred             Eeccccc-CCCCCeEEEEECH--------HHHhccCCCCcccCCCcCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHH
Confidence            8999987 58 9999999998        887776543 334557899999999888874222   24567788888999


Q ss_pred             HHHhhcCCCCccc-cCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHH
Q 042445          154 CDRLKEIPCITCP-KKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEN  230 (246)
Q Consensus       154 ~~~L~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~  230 (246)
                      .+.|+++ ++..+ ..+..|.+++++++...  + .+..++ ...|.++||.+.|+.    ++++|+++.  .+++++++
T Consensus       357 ~~~L~~l-~~~~~~~~~~~g~~~~v~l~~~~--~-~~~~~l-~~~l~~~Gv~v~~~~----~~~iRi~~~~~~t~e~i~~  427 (439)
T 2oat_A          357 RNELMKL-PSDVVTAVRGKGLLNAIVIKETK--D-WDAWKV-CLRLRDNGLLAKPTH----GDIIRFAPPLVIKEDELRE  427 (439)
T ss_dssp             HHHHTTS-CTTTEEEEEEETTEEEEEECCCS--S-CCHHHH-HHHHHHTTEECCBSS----SSEEEECCCTTCCHHHHHH
T ss_pred             HHHHHHh-cCCCcEEEEeeeeEEEEEEecCc--c-HHHHHH-HHHHHHCCeEEecCC----CCEEEEECccCCCHHHHHH
Confidence            9999886 33211 12345778888886431  0 123444 445667899999853    689999876  48999999


Q ss_pred             HHHHHHHHHHH
Q 042445          231 GLGRMKAFYDR  241 (246)
Q Consensus       231 ~~~~l~~~~~~  241 (246)
                      ++++|.+++++
T Consensus       428 ~l~~l~~~l~~  438 (439)
T 2oat_A          428 SIEIINKTILS  438 (439)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999998864

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=99.88  E-value=2e-22  Score=168.35  Aligned_cols=205  Identities=14%  Similarity=0.053  Sum_probs=144.6

Q ss_pred             hhhhh-hhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcc
Q 042445            2 ELINQ-DITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGS   76 (246)
Q Consensus         2 e~~~~-~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s   76 (246)
                      +.+++ .++++    ++++||||||.+++  ++.      ++||+++|+||+|+.+...    ..+..+   +  +++.|
T Consensus       131 ~~l~~~~i~~~~k~v~~~~~~nptG~~~~--~i~------~~~~~~li~D~a~~~~~~~----~~~~~~---d--i~~~s  193 (360)
T 1w23_A          131 PDFSEFQLNENDAYLHITSNNTIYGTQYQ--NFP------EINHAPLIADMSSDILSRP----LKVNQF---G--MIYAG  193 (360)
T ss_dssp             CCGGGCCCCTTEEEEEEESEETTTTEECS--SCC------CCCSSCEEEECTTTTTSSC----CCGGGC---S--EEEEE
T ss_pred             cchHhhccCCCCCEEEEeCCCCCcceecc--ccc------ccCCceEEEechhhcCCCC----cCcccC---C--EEEEE
Confidence            34555 55443    78899999999987  232      2799999999999875422    122222   2  78999


Q ss_pred             cccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHh------------hh-cCCCCchHHHHHHHHHhhchHH-HHHHH
Q 042445           77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFL------------NI-SSDPATFIQGAVPQILEKTEEE-FFSKI  142 (246)
Q Consensus        77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~------------~~-~~~~~~~~q~~~~~~l~~~~~~-~~~~~  142 (246)
                      +||.|+++|  +||+++++        ++++.+....            .. ..+.+...+.++..+++...+. ++++.
T Consensus       194 ~sK~~~~~G--~G~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~  263 (360)
T 1w23_A          194 AQKNLGPSG--VTVVIVKK--------DLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAI  263 (360)
T ss_dssp             TTTTTSCTT--CEEEEEEH--------HHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred             cccccCCCC--cEEEEEcH--------HHHhhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHH
Confidence            999998777  99999998        7665553321            01 1245666667777777642233 67888


Q ss_pred             HHHHHHHHHHHHHHhhcCCCC-ccccCC--CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEE
Q 042445          143 IDILRETADKCCDRLKEIPCI-TCPKKP--EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRI  219 (246)
Q Consensus       143 ~~~~~~~~~~l~~~L~~~~~~-~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRl  219 (246)
                      ++.++++++.+.+.|++++++ ..+..|  .+++++|++++...      +...+.+.|.++||.+.||..+  ++++|+
T Consensus       264 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~gi~~~~~~~~--~~~iRi  335 (360)
T 1w23_A          264 AKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVTFNLRNEE------LNQQFLAKAKEQGFVGLNGHRS--VGGCRA  335 (360)
T ss_dssp             HHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSSEEEEECSSHH------HHHHHHHHHHHTTEESCBCCTT--TCSEEE
T ss_pred             HHHHHHHHHHHHHHHHHccCcccccCCchhccCcEEEEEcCCCc------cHHHHHHHHHHCCeeeecCCCC--CCeEEE
Confidence            999999999999999988655 322123  34668998876421      2333444577899999988754  689999


Q ss_pred             Eeec--ChHHHHHHHHHHHHHHHH
Q 042445          220 TFAV--EPSALENGLGRMKAFYDR  241 (246)
Q Consensus       220 s~~~--~~~~l~~~~~~l~~~~~~  241 (246)
                      +++.  +++++++++++|++++++
T Consensus       336 s~~~~~~~~~i~~~~~~l~~~~~~  359 (360)
T 1w23_A          336 SIYNAVPIDACIALRELMIQFKEN  359 (360)
T ss_dssp             ECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             EecCCCCHHHHHHHHHHHHHHHhh
Confidence            9994  889999999999988754

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=99.88  E-value=3.9e-22  Score=166.20  Aligned_cols=202  Identities=10%  Similarity=0.079  Sum_probs=135.2

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCccc--CCCCCccccccCCcccEEEEcccccccccCCceEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAF--GNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLG   89 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~--~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G   89 (246)
                      ++++||| ||.++|.+++++|.++|++||+++|+|++|..+..  .+.....+ .+.....++ +.|+||. +++ ...|
T Consensus       146 ~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~-~~~~~~d~~-~~s~sK~-g~~-~G~g  220 (356)
T 1v72_A          146 SITQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEM-TWKAGVDAL-SFGATKN-GVL-AAEA  220 (356)
T ss_dssp             EEESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTT-TGGGTCCEE-EECCGGG-TCS-SCEE
T ss_pred             EEEcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHh-hhhhcCCEE-EEecccC-CCc-CccE
Confidence            7778865 99999999999999999999999999999986432  22111111 111122344 4589998 442 2234


Q ss_pred             EEEeeCCCCCcchhhHHHHHHHHhhhcCCCCc---hHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccc
Q 042445           90 WLVTSDPNGILQDSGIVDSIKIFLNISSDPAT---FIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCP  166 (246)
Q Consensus        90 ~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~  166 (246)
                      |+++++        ++++.+..........+.   ..+..+...+.+   ....+..+.++++++.+.+.|++++++. +
T Consensus       221 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~l~~~L~~~~g~~-~  288 (356)
T 1v72_A          221 IVLFNT--------SLATEMSYRRKRAGHLSSKMRFLSAQIDAYLTD---DLWLRNARKANAAAQRLAQGLEGLGGVE-V  288 (356)
T ss_dssp             EEESSG--------GGHHHHHHHHHHTTCCCSSTHHHHHHHHHHTST---THHHHHHHHHHHHHHHHHHHHTTCTTEE-E
T ss_pred             EEEECH--------HHHhhHHHHhhccCchhhhHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHhhCCCcE-E
Confidence            888876        777777654322212222   222223334432   2233456667888899999998877876 3


Q ss_pred             cCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHHh
Q 042445          167 KKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       167 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~~  243 (246)
                      ..|.+++++|++++         . ++ .+.|.++||.+.||. |+ ++++|+++..  +++++++++++|++++++..
T Consensus       289 ~~~~~~~~~~~~~~---------~-~~-~~~l~~~gi~v~~g~-~~-~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~~~  354 (356)
T 1v72_A          289 LGGTEANILFCRLD---------S-AM-IDALLKAGFGFYHDR-WG-PNVVRFVTSFATTAEDVDHLLNQVRLAADRTQ  354 (356)
T ss_dssp             ESCCCSSEEEEEEC---------H-HH-HHHHHHTTCBCBCSS-SS-TTEEEEECCTTCCHHHHHHHHHHHHHTC----
T ss_pred             ccCCCccEEEEEcC---------H-HH-HHHHHhcCeEEeccc-cC-CCeEEEEecCCCCHHHHHHHHHHHHHHHHhhc
Confidence            46788899998764         1 34 444568899999987 55 7899999874  88999999999999887653

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=99.88  E-value=2.3e-21  Score=164.85  Aligned_cols=214  Identities=12%  Similarity=0.036  Sum_probs=153.1

Q ss_pred             hhhhhhhc-cc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcc
Q 042445            2 ELINQDIT-RE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGS   76 (246)
Q Consensus         2 e~~~~~~~-~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s   76 (246)
                      |.+++.++ .+    ++++||||||.+.+   +++|.++|++||+++|+|++|+.....-    .   +...+..+++.|
T Consensus       126 ~~l~~~i~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~~~----~---~~~~~~d~~~~s  195 (416)
T 3isl_A          126 EDIIREIKKVKPKIVAMVHGETSTGRIHP---LKAIGEACRTEDALFIVDAVATIGGCEV----K---VDEWKIDAAIGG  195 (416)
T ss_dssp             HHHHHHHHHHCCSEEEEESEETTTTEECC---CHHHHHHHHHTTCEEEEECTTTTTTSCC----C---TTTTTCSEEECC
T ss_pred             HHHHHHHhhCCCcEEEEEccCCCCceecC---HHHHHHHHHHcCCEEEEECCccccCCCc----c---hhhcCCCEEEec
Confidence            45566565 23    88899999999988   7889999999999999999987433211    1   111234588999


Q ss_pred             cccc-cccCCceEEEEEeeCCCCCcchhhHHHHHHHHh--------------------------------------hh-c
Q 042445           77 ISKR-GIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFL--------------------------------------NI-S  116 (246)
Q Consensus        77 ~sK~-~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~--------------------------------------~~-~  116 (246)
                      ++|. ++.+  ++|++++++        ++++.+....                                      .. .
T Consensus       196 ~~K~l~g~~--g~g~~~~~~--------~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~  265 (416)
T 3isl_A          196 TQKCLSVPS--GMAPITYNE--------RVADVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNH  265 (416)
T ss_dssp             SSSTTCCCS--SEEEEEECH--------HHHHHHHTC------------------CCCCSCSTTCHHHHHHHTSTTCCCS
T ss_pred             CccccCCCC--CeEEEEECH--------HHHHHhhccccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCC
Confidence            9996 4444  589999988        8887776321                                      11 2


Q ss_pred             CCCCchHHHHHHHHHhhchHHH-HHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC---ceEEEEEeccccccCCCChHH
Q 042445          117 SDPATFIQGAVPQILEKTEEEF-FSKIIDILRETADKCCDRLKEIPCITCPKKPEG---SMFVMVKLNYSLLEGINSDME  192 (246)
Q Consensus       117 ~~~~~~~q~~~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~  192 (246)
                      .+.+...+.++..++... ..+ +++.++.++++++.+.+.|+++ ++.. ..+.+   ++++++.++...     +..+
T Consensus       266 ~~~~~~~~~a~~~al~~~-~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~  337 (416)
T 3isl_A          266 HTEATTMLYALREGVRLV-LEEGLETRFERHRHHEAALAAGIKAM-GLRL-FGDDSCKMPVVTCVEIPGGI-----DGES  337 (416)
T ss_dssp             SCCCHHHHHHHHHHHHHH-HHHCHHHHHHHHHHHHHHHHHHHHHT-TCCB-CSCGGGBCTTEEEEECCTTC-----CHHH
T ss_pred             CCCCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHc-CCEe-ccCccccCCcEEEEeCCCCC-----CHHH
Confidence            245677777777777642 334 8889999999999999999986 6663 34433   677787775322     3555


Q ss_pred             HHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHH-HHHHHHHHHHHHHHHh
Q 042445          193 FALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSA-LENGLGRMKAFYDRHA  243 (246)
Q Consensus       193 ~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~-l~~~~~~l~~~~~~~~  243 (246)
                      +...+++++||.+.+|.....++++|+++..  ++++ +++++++|+++++++.
T Consensus       338 l~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~~~~  391 (416)
T 3isl_A          338 VRDMLLAQFGIEIASSFGPLAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLRHN  391 (416)
T ss_dssp             HHHHHHHHHCEECBCCCSTTTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhCCEEEecCCCCCCCCEEEEecccCCCcHHHHHHHHHHHHHHHHHcC
Confidence            6555555569999998865558999999942  5555 9999999999988653

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=99.88  E-value=2e-21  Score=164.91  Aligned_cols=202  Identities=13%  Similarity=0.103  Sum_probs=135.8

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      |.+++.++++    ++++|+||||.+++   +++|.++|++||+++|+||+|..+.+..    +. .+   +..+++.|+
T Consensus       140 ~~l~~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~----~~-~~---~~di~~~s~  208 (398)
T 2rfv_A          140 EEIRAAMRPETKVVYIETPANPTLSLVD---IETVAGIAHQQGALLVVDNTFMSPYCQQ----PL-QL---GADIVVHSV  208 (398)
T ss_dssp             HHHHHHCCTTEEEEEEESSBTTTTBCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC----GG-GG---TCSEEEEET
T ss_pred             HHHHHhcCCCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccCC----ch-hh---CCcEEEEeC
Confidence            4455555543    88899999999997   8999999999999999999999776532    11 12   356899999


Q ss_pred             ccccccCCceE-EEEEeeCCCCCcchhhHHH-HHHHHhh-h-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 042445           78 SKRGIVPGLRL-GWLVTSDPNGILQDSGIVD-SIKIFLN-I-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKC  153 (246)
Q Consensus        78 sK~~~~~g~r~-G~i~~~~~~~~~~~~~~~~-~l~~~~~-~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l  153 (246)
                      ||.|+++|+|+ ||+++++        ++++ .++.... . +.+.+++.+.++.+.++.     +....+...++.+.+
T Consensus       209 sK~~~~~g~~~~G~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~l  275 (398)
T 2rfv_A          209 TKYINGHGDVIGGIIVGKQ--------EFIDQARFVGLKDITGGCMSPFNAWLTLRGVKT-----LGIRMERHCENALKI  275 (398)
T ss_dssp             TTTTTCSSCCCCEEEEECH--------HHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHHH
T ss_pred             cccccCCCCceEEEEEECH--------HHHHHHHHHHHHhCCCCCCCHHHHHHHHhhhhh-----HHHHHHHHHHHHHHH
Confidence            99999999999 9999998        7776 5665433 3 347889999999888874     233334455666777


Q ss_pred             HHHhhcCC--------------CCccccCC---CCceEEEEEeccccccCCCChHHHHHHHHHh---cCeEEecCCCcC-
Q 042445          154 CDRLKEIP--------------CITCPKKP---EGSMFVMVKLNYSLLEGINSDMEFALKLAKE---ESVIVLPGITVG-  212 (246)
Q Consensus       154 ~~~L~~~~--------------~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~---~gi~v~pg~~f~-  212 (246)
                      .+.|++.+              ++.. ..|   ..|.+++++++..        .+....++.+   .|+.+.+|..|. 
T Consensus       276 ~~~l~~~~~v~~~~~~~L~~~p~~~~-~~~~~~~~g~~~~~~~~~~--------~~~~~~l~~~~~~~~i~~~~G~~~~l  346 (398)
T 2rfv_A          276 ARFLEGHPSITRVYYPGLSSHPQYEL-GQRQMSLPGGIISFEIAGG--------LEAGRRMINSVELCLLAVSLGDTETL  346 (398)
T ss_dssp             HHHHHTCTTEEEEECTTSTTSTTHHH-HHHHCSSCCSEEEEEETTH--------HHHHHHHHTTCSSSEECSCCSSSSCE
T ss_pred             HHHHHcCCCeeEEECCCCCCCccHHH-HHhhCCCCceEEEEEEcCC--------HHHHHHHHHhCCcceeccCCCCccee
Confidence            77776542              2221 111   2355556577631        1223334433   478888875531 


Q ss_pred             ---------------------C-CCeEEEEeec--ChHHHHHHHHHHH
Q 042445          213 ---------------------L-KDWLRITFAV--EPSALENGLGRMK  236 (246)
Q Consensus       213 ---------------------~-~~~iRls~~~--~~~~l~~~~~~l~  236 (246)
                                           . ++++|+|++.  ++++++.+.+.|.
T Consensus       347 i~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~  394 (398)
T 2rfv_A          347 IQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIR  394 (398)
T ss_dssp             EECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHH
T ss_pred             eecccccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHH
Confidence                                 1 5899999996  3444444444443

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=99.88  E-value=1.1e-21  Score=164.89  Aligned_cols=213  Identities=13%  Similarity=0.061  Sum_probs=143.8

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      |.+++.+.++    ++++||||||.+++   +++|.++|++||+++|+|++|+.+...-    .   +...+..+++.|+
T Consensus       135 ~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~~~~~~----~---~~~~~~d~~~~s~  204 (376)
T 3f0h_A          135 EKLYEYDNQNFTGLLVNVDETSTAVLYD---TMMIGEFCKKNNMFFVCDCVSAFLADPF----N---MNECGADVMITGS  204 (376)
T ss_dssp             HHHHTTTTSCCCEEEEESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSCC----C---HHHHTCSEEEEET
T ss_pred             HHHHHhhccCceEEEEecccCCcceecC---HHHHHHHHHHcCCEEEEEcCccccCccc----c---ccccCccEEEecC
Confidence            3455555443    88889999999999   9999999999999999999988654321    1   1112234888999


Q ss_pred             ccccc-cCCceEEEEEeeCCCCCcchhhHHHHHHHHhh------------------hcCCCCchHHHHHHHHHhhchHH-
Q 042445           78 SKRGI-VPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN------------------ISSDPATFIQGAVPQILEKTEEE-  137 (246)
Q Consensus        78 sK~~~-~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~------------------~~~~~~~~~q~~~~~~l~~~~~~-  137 (246)
                      +|.++ ++|  +|++++++        ++++.+.....                  ...+++...+.++..++....+. 
T Consensus       205 ~K~l~~~~G--~g~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~  274 (376)
T 3f0h_A          205 QKVLACPPG--ISVIVLAP--------RGVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHG  274 (376)
T ss_dssp             TTTTCCCSS--CEEEEECH--------HHHHHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTT
T ss_pred             cccccCCCc--eEEEEECH--------HHHHHhhcCCCCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhc
Confidence            99987 566  67888888        88887764210                  01133333335555555532233 


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeE
Q 042445          138 FFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWL  217 (246)
Q Consensus       138 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~i  217 (246)
                      .+++.++.++++++.+.+.|+++ ++.. ..+.....++...+...     +..++...+.+++||.+.||.....++++
T Consensus       275 ~~~~~~~~~~~~~~~l~~~L~~~-~~~~-~~~~~~~~~~~~~~~~~-----~~~~l~~~l~~~~gi~v~~g~~~~~~~~l  347 (376)
T 3f0h_A          275 GADAEVARIASQAADFRAKIKDL-PFEL-VSESPANGVTSVHPTTA-----NAYDIFLKLKDEYGIWICPNGGEMKDTIF  347 (376)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTS-SEEE-CCSSBBTTEEEEEESSS-----CHHHHHHHHHHHSSEECEECCGGGTTTCE
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHc-CCcc-CccccCceEEEEeCCCC-----CHHHHHHHHHHhCCEEEecCccccCCCEE
Confidence            57888888999999999999887 4542 23332222222122211     34555555554459999998544457899


Q ss_pred             EEEeec--ChHHHHHHHHHHHHHHHH
Q 042445          218 RITFAV--EPSALENGLGRMKAFYDR  241 (246)
Q Consensus       218 Rls~~~--~~~~l~~~~~~l~~~~~~  241 (246)
                      |+++..  +++++++++++|++++++
T Consensus       348 Ris~~~~~t~e~i~~~~~~l~~~l~~  373 (376)
T 3f0h_A          348 RVGHIGALTHEDNTTLVNAFKDLQKR  373 (376)
T ss_dssp             EEECCSSCCHHHHHHHHHHHHHHHHT
T ss_pred             EEecCCCCCHHHHHHHHHHHHHHHHh
Confidence            999973  899999999999998864

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=99.88  E-value=5.9e-22  Score=171.70  Aligned_cols=210  Identities=16%  Similarity=0.103  Sum_probs=141.8

Q ss_pred             cccCC-cCCCccC-CChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEE
Q 042445           12 FSDFQ-VFHVGSG-FSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLG   89 (246)
Q Consensus        12 ~~~~p-~NPtG~~-~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G   89 (246)
                      ++.+| +|++|.+ ++++++++|.++|++||+++|+||+|.++...|..+ ....++...++   .+|||.++..|+|+|
T Consensus       227 vi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~-a~~~~~v~pdi---~t~sK~l~gg~~plG  302 (472)
T 3hmu_A          227 FIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGNWF-GTQTMGIRPHI---MTIAKGLSSGYAPIG  302 (472)
T ss_dssp             EEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSC-HHHHHTCCCSE---EEECGGGTTTSSCCE
T ss_pred             EEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccCccc-hhHHhCCCCce---eeechhhhcCCcceE
Confidence            55555 4556654 488999999999999999999999999987666422 22223322233   368899877779999


Q ss_pred             EEEeeCCCCCcchhhHHHHHHHH---hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHH-HHHHHHHHHhhc---CCC
Q 042445           90 WLVTSDPNGILQDSGIVDSIKIF---LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILR-ETADKCCDRLKE---IPC  162 (246)
Q Consensus        90 ~i~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~-~~~~~l~~~L~~---~~~  162 (246)
                      |+++++        ++++.+...   ...+++.|+++++++.++|+...+   +...+.++ ++.+.+.+.|++   ++.
T Consensus       303 ~v~~~~--------~i~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~---~~~~~~~~~~~~~~l~~~L~~l~~~~~  371 (472)
T 3hmu_A          303 GSIVCD--------EVAHVIGKDEFNHGYTYSGHPVAAAVALENLRILEE---ENILDHVRNVAAPYLKEKWEALTDHPL  371 (472)
T ss_dssp             EEEEEH--------HHHHHHTTSCBCCCCTTTTCHHHHHHHHHHHHHHHH---TTHHHHHHHTHHHHHHHHHHGGGGSTT
T ss_pred             EEEECH--------HHHHhcccCCccccCCCCCCHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            999998        999988321   223558899999999999974322   23344445 555555555544   444


Q ss_pred             CccccCCCCceEEEEEeccccc--cCC----CChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHH
Q 042445          163 ITCPKKPEGSMFVMVKLNYSLL--EGI----NSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGR  234 (246)
Q Consensus       163 ~~~~~~~~~g~~~~~~~~~~~~--~~~----~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~  234 (246)
                      +.. +.+ .|.++++.+.....  ...    ......+.+.|.++||.+.|+.     +++||++.  .+++++++++++
T Consensus       372 v~~-vr~-~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g-----~~iRi~p~~~~t~e~i~~~l~~  444 (472)
T 3hmu_A          372 VGE-AKI-VGMMASIALTPNKASRAKFASEPGTIGYICRERCFANNLIMRHVG-----DRMIISPPLVITPAEIDEMFVR  444 (472)
T ss_dssp             EEE-EEE-ETTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHHTTBCCEEET-----TEEEECCCTTCCHHHHHHHHHH
T ss_pred             eEE-EEe-cCceEEEEEecCccccccccchhHHHHHHHHHHHHHCCcEEEecC-----CEEEEECCCCCCHHHHHHHHHH
Confidence            432 333 45666666653210  000    0013445566778899999863     89999955  499999999999


Q ss_pred             HHHHHHHHh
Q 042445          235 MKAFYDRHA  243 (246)
Q Consensus       235 l~~~~~~~~  243 (246)
                      |.+++++..
T Consensus       445 l~~~l~~~~  453 (472)
T 3hmu_A          445 IRKSLDEAQ  453 (472)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999987754

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=99.88  E-value=1e-21  Score=166.66  Aligned_cols=200  Identities=11%  Similarity=0.036  Sum_probs=144.3

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      ++++||||||.+++.+++.++      +|+++|+|++|+.+...   . .+.     +..+++.|+||.++++| ++||+
T Consensus       170 ~~~~~~nptG~~~~~~~i~~~------~~~~vivD~a~~~~~~~---~-~~~-----~~di~~~s~sK~~~~~g-g~g~l  233 (398)
T 2fyf_A          170 AWAHNETSTGVAVAVRRPEGS------DDALVVIDATSGAGGLP---V-DIA-----ETDAYYFAPQKNFASDG-GLWLA  233 (398)
T ss_dssp             EEESEETTTTEECCCCCCTTC------C-CEEEEECTTTTTTSC---C-CGG-----GCSEEEECTTSTTCSCS-SEEEE
T ss_pred             EEeCcCCCcceecchHHhhhh------cCCeEEEEeccccCCcc---c-Ccc-----cCcEEEEecCcccCCCC-ceEEE
Confidence            678999999999998877765      89999999999865422   1 111     12378899999998886 59999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHh---------------------hh-cCCCCchHHHHHHHHHhhchHH-HHHHHHHHHHH
Q 042445           92 VTSDPNGILQDSGIVDSIKIFL---------------------NI-SSDPATFIQGAVPQILEKTEEE-FFSKIIDILRE  148 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~---------------------~~-~~~~~~~~q~~~~~~l~~~~~~-~~~~~~~~~~~  148 (246)
                      ++++        ++++.++...                     .. ..+.+...+.++..+++...+. ++++.++.+++
T Consensus       234 ~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~  305 (398)
T 2fyf_A          234 IMSP--------AALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTAD  305 (398)
T ss_dssp             EECH--------HHHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred             EECH--------HHHHHhhcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            9988        8887774320                     11 1245666777777777642222 27888999999


Q ss_pred             HHHHHHHHhhcCCCCcccc-CC--CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--
Q 042445          149 TADKCCDRLKEIPCITCPK-KP--EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--  223 (246)
Q Consensus       149 ~~~~l~~~L~~~~~~~~~~-~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--  223 (246)
                      +++.+.+.|++++++..+. .|  .+++++|++++...     +..++ .+.|.++||.+.+|.....++++|++++.  
T Consensus       306 ~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l-~~~L~~~gI~v~~g~~~~~~~~iRis~~~~~  379 (398)
T 2fyf_A          306 SSQRLYSWAQERPYTTPFVTDPGLRSQVVGTIDFVDDV-----DAGTV-AKILRANGIVDTEPYRKLGRNQLRVAMFPAV  379 (398)
T ss_dssp             HHHHHHHHHHHSTTEEESCCSGGGBCSSEEEEEECTTS-----CHHHH-HHHHHHTTCBCCSCCTTTCSSEEEEECCTTS
T ss_pred             HHHHHHHHHHHcCCceeccCChhhcCCcEEEEECCCCC-----CHHHH-HHHHHHCCcEEecCcccCCCCEEEEEecCCC
Confidence            9999999999887776432 24  34558998886421     34454 44566779999987432226899999994  


Q ss_pred             ChHHHHHHHHHHHHHHHH
Q 042445          224 EPSALENGLGRMKAFYDR  241 (246)
Q Consensus       224 ~~~~l~~~~~~l~~~~~~  241 (246)
                      +++++++++++|++++++
T Consensus       380 t~e~i~~~~~~l~~~l~~  397 (398)
T 2fyf_A          380 EPDDVSALTECVDWVVER  397 (398)
T ss_dssp             CHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHh
Confidence            899999999999988764

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=99.88  E-value=2.5e-22  Score=167.01  Aligned_cols=201  Identities=15%  Similarity=0.123  Sum_probs=132.5

Q ss_pred             cccCCcCCC-ccCCChhhHHHHHHHHHHcCCEEEEccccCCcc--cCCCCCccccccCCcccEEEEcccccccccCCceE
Q 042445           12 FSDFQVFHV-GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLA--FGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRL   88 (246)
Q Consensus        12 ~~~~p~NPt-G~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~--~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~   88 (246)
                      ++++||||| |.+++.+++++|+++|+++|+++|+|++|..+.  +.+.....+.  ...+ . ++.|+||.++++   +
T Consensus       137 ~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~--~~~d-~-~~~s~sK~l~~~---~  209 (347)
T 1jg8_A          137 AIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYA--GYAD-S-VMFCLSKGLCAP---V  209 (347)
T ss_dssp             EEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHH--HTCS-E-EEEESSSTTCCS---S
T ss_pred             EEeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhc--cccc-E-EEEecccccCCC---c
Confidence            789999999 999999999999999999999999999875321  2221111111  1122 2 334799998754   5


Q ss_pred             EE-EEeeCCCCCcchhhHHHHHHHHhhhc-CC--CCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCc
Q 042445           89 GW-LVTSDPNGILQDSGIVDSIKIFLNIS-SD--PATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCIT  164 (246)
Q Consensus        89 G~-i~~~~~~~~~~~~~~~~~l~~~~~~~-~~--~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~  164 (246)
                      || +++++        ++++.+......+ .+  .+.+.+.++...++..    .+..++ ..++++.+.+.|+++ ++.
T Consensus       210 G~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~-~~~~~~~l~~~L~~~-~~~  275 (347)
T 1jg8_A          210 GSVVVGDR--------DFIERARKARKMLGGGMRQAGVLAAAGIIALTKM----VDRLKE-DHENARFLALKLKEI-GYS  275 (347)
T ss_dssp             CEEEEECH--------HHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHHS----STTHHH-HHHHHHHHHHHHHHH-TCB
T ss_pred             eEEEEcCH--------HHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHH----HHHHHH-HHHHHHHHHHHHHhc-Cce
Confidence            75 55565        7888776654322 12  2444555555555431    112222 235667888888777 555


Q ss_pred             cccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHH
Q 042445          165 CPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       165 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~  242 (246)
                      ....+..++++|++++...    .+..++.. .|.++||.+.|+.    .+++|+++..  +++++++++++|.++++++
T Consensus       276 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~l~~~gi~v~~~~----~~~iRl~~~~~~~~e~i~~~~~~l~~~l~~~  346 (347)
T 1jg8_A          276 VNPEDVKTNMVILRTDNLK----VNAHGFIE-ALRNSGVLANAVS----DTEIRLVTHKDVSRNDIEEALNIFEKLFRKF  346 (347)
T ss_dssp             CCGGGCCSSEEEEECTTSS----SCHHHHHH-HHHHHTEECEEEE----TTEEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             eccCCCcceEEEEEccccc----CCHHHHHH-HHHHCCCEEecCC----CCeEEEEeCCCCCHHHHHHHHHHHHHHHHhc
Confidence            2223456778998886311    13455544 4568899999854    5789999864  8999999999999988654

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=99.88  E-value=1.8e-21  Score=168.07  Aligned_cols=212  Identities=13%  Similarity=0.079  Sum_probs=139.8

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      |.+++.++++    ++++||||||.+++   +++|.++|++||+++|+||+|.....    ..++.    .+..+++.|+
T Consensus       208 ~~l~~~i~~~tk~v~l~~p~NptG~v~~---l~~i~~la~~~gi~livDea~~~g~~----~~~~~----~~~div~~S~  276 (464)
T 1ibj_A          208 DEVAAAIGPQTKLVWLESPTNPRQQISD---IRKISEMAHAQGALVLVDNSIMSPVL----SRPLE----LGADIVMHSA  276 (464)
T ss_dssp             HHHHHHCCSSEEEEEECSSCTTTCCCCC---HHHHHHHHHTTTCEEEEECTTTCTTT----CCGGG----TTCSEEEEET
T ss_pred             HHHHHHhccCceEEEEeCCCCCCCEeec---HHHHHHHHHHcCCEEEEECCCccccc----CChhh----cCCEEEEECC
Confidence            4566666554    88999999999996   89999999999999999999985321    11221    2467999999


Q ss_pred             ccccccC-CceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH-
Q 042445           78 SKRGIVP-GLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCC-  154 (246)
Q Consensus        78 sK~~~~~-g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~-  154 (246)
                      ||.|+++ |+|+||+++++.       ++++.+..... .+.+++++.+.++.+.+... ...+++..+......+.+. 
T Consensus       277 sK~~~g~~Gl~~G~l~~~~~-------~l~~~l~~~~~~~g~~~~~~~~~a~~~al~~~-~~r~~~~~~~~~~l~~~l~~  348 (464)
T 1ibj_A          277 TKFIAGHSDVMAGVLAVKGE-------KLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTM-ALRIEKQQENARKIAMYLSS  348 (464)
T ss_dssp             TTTTTCSSCCCCEEEEECSH-------HHHHHHHHHHHHTTCBCCHHHHHHHHHHHTTH-HHHHHHHHHHHHHHHHHHHT
T ss_pred             cccccCCCCCcEEEEEEChH-------HHHHHHHHHHHhcCCCCCHHHHHHHHhchhhH-HHHHHHHHHHHHHHHHHHHh
Confidence            9988764 899999999852       67777776643 34467889999888888742 2222222222222222221 


Q ss_pred             ---------HHhhcCCCCccccCCC---CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCC------------C
Q 042445          155 ---------DRLKEIPCITCPKKPE---GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGI------------T  210 (246)
Q Consensus       155 ---------~~L~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~------------~  210 (246)
                               +.|+++|++.. ..+.   .|.+++++++..      +..+.+.+.|+..||.+.+|.            +
T Consensus       349 ~~~v~~~~~~~L~~~p~~~~-~~~~~~g~g~~~~~~l~~~------~~~~~~~~~L~~~gi~v~~G~~~sl~~~p~~~~~  421 (464)
T 1ibj_A          349 HPRVKKVYYAGLPDHPGHHL-HFSQAKGAGSVFSFITGSV------ALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSH  421 (464)
T ss_dssp             CTTCCEEECTTSTTSTTHHH-HTTTCSCCCSEEEEECSCH------HHHHHHHHHCSSSEECSCCCSSSCEEECTTTTTT
T ss_pred             CCCceEEECCCCCCCcchHH-HhccCCCCceEEEEEECCH------HHHHHHHHhcCcceEeecCCCCceeeeccccccc
Confidence                     22333344432 2332   356777777421      123334445666788888875            1


Q ss_pred             c----------CC-CCeEEEEeecChHHHHHHHHHHHHHHHH
Q 042445          211 V----------GL-KDWLRITFAVEPSALENGLGRMKAFYDR  241 (246)
Q Consensus       211 f----------~~-~~~iRls~~~~~~~l~~~~~~l~~~~~~  241 (246)
                      +          +. ++++|+|++.  +++++++++|++++++
T Consensus       422 ~~~~~~~~~~~g~~~~~iRlsvg~--edi~~li~~L~~al~~  461 (464)
T 1ibj_A          422 ASIPAEVREARGLTEDLVRISAGI--EDVDDLISDLDIAFKT  461 (464)
T ss_dssp             CSCCSSSSSSSSCCTTCEEEECCS--SCHHHHHHHHHHHHHS
T ss_pred             ccCCHHHHHhcCCCcCeEEEEeCC--CCHHHHHHHHHHHHhh
Confidence            2          12 5799999998  7789999999998864

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.88  E-value=1.5e-21  Score=164.38  Aligned_cols=209  Identities=17%  Similarity=0.182  Sum_probs=148.4

Q ss_pred             hhhhhhhcc-c----cccCCcCCCccCCChhhHHHHHHHHHHc--CCEEEEccccCCcccCCCCCccccccCCcccEEEE
Q 042445            2 ELINQDITR-E----FSDFQVFHVGSGFSGSFVSPIAETAKKL--GIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTL   74 (246)
Q Consensus         2 e~~~~~~~~-~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~--~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~   74 (246)
                      |.+++.+++ +    ++++|+||||.+++   +++|.++|++|  |+++|+||+|+....   +. .+   ...+..+++
T Consensus       127 ~~l~~~l~~~~~~~v~~~~~~nptG~~~~---l~~i~~~~~~~~~~~~li~D~a~~~~~~---~~-~~---~~~~~d~~~  196 (385)
T 2bkw_A          127 ELITEKLSQNSYGAVTVTHVDTSTAVLSD---LKAISQAIKQTSPETFFVVDAVCSIGCE---EF-EF---DEWGVDFAL  196 (385)
T ss_dssp             HHHHHHHHHSCCSEEEEESEETTTTEECC---HHHHHHHHHHHCTTSEEEEECTTTTTTS---CC-CT---TTTTCSEEE
T ss_pred             HHHHHHHhcCCCCEEEEEccCCCcCeEcC---HHHHHHHHHhhCCCCEEEEECccccCCc---cc-cc---cccCceEEE
Confidence            445555544 2    88899999999998   77999999999  999999999974321   11 12   222345888


Q ss_pred             cccccccc-cCCceEEEEEeeCCCCCcchhhHHH-HHH------------------HH-hhh-------cCCCCchHHHH
Q 042445           75 GSISKRGI-VPGLRLGWLVTSDPNGILQDSGIVD-SIK------------------IF-LNI-------SSDPATFIQGA  126 (246)
Q Consensus        75 ~s~sK~~~-~~g~r~G~i~~~~~~~~~~~~~~~~-~l~------------------~~-~~~-------~~~~~~~~q~~  126 (246)
                      .|++|.++ .+|  +||+++++        ++++ .++                  .. ...       ..+.+...+.+
T Consensus       197 ~s~~K~~~~~~G--~G~~~~~~--------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  266 (385)
T 2bkw_A          197 TASQKAIGAPAG--LSISLCSS--------RFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINS  266 (385)
T ss_dssp             EESSSTTCCCSC--EEEEEECH--------HHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHH
T ss_pred             ecCccccccCCc--ceEEEEcH--------HHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHH
Confidence            99999654 567  49999987        6666 431                  11 011       12567777777


Q ss_pred             HHHHHhhchHHHHHHHHHHHHHHHHHHHHHh-hcCCCCccccCC-----CCceEEEEEeccccccCCCChHHHHHHHHHh
Q 042445          127 VPQILEKTEEEFFSKIIDILRETADKCCDRL-KEIPCITCPKKP-----EGSMFVMVKLNYSLLEGINSDMEFALKLAKE  200 (246)
Q Consensus       127 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L-~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~  200 (246)
                      +..+++...+..+++.++.++++++.+.+.| +++ ++.. ..+     ..++++|++++.        ..++ .+.|.+
T Consensus       267 ~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-g~~~-~~~~~~~~~~~~~~~~~~~~--------~~~~-~~~l~~  335 (385)
T 2bkw_A          267 LDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGL-QLTS-VSRYPSNMSAHGLTAVYVAD--------PPDV-IAFLKS  335 (385)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTT-CCEE-SSCSSSTTBCSSCEEEECSC--------HHHH-HHHHHH
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhc-Ccee-cccCcccccCCceEEEecCC--------HHHH-HHHHHH
Confidence            7777764222337778888999999999999 887 6663 322     257888887752        3344 445668


Q ss_pred             cCeEEecCCCcCC-CCeEEEE-ee-----cChHHHHHHHHHHHHHHHH
Q 042445          201 ESVIVLPGITVGL-KDWLRIT-FA-----VEPSALENGLGRMKAFYDR  241 (246)
Q Consensus       201 ~gi~v~pg~~f~~-~~~iRls-~~-----~~~~~l~~~~~~l~~~~~~  241 (246)
                      +||.+.+|..+.. .+++|++ ++     .+++++++++++|++++++
T Consensus       336 ~gi~v~~g~~~~~~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~~  383 (385)
T 2bkw_A          336 HGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQR  383 (385)
T ss_dssp             TTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC
T ss_pred             CCeEEeCCCCcccCCCEEEEEccccccccCCHHHHHHHHHHHHHHHHh
Confidence            9999999887543 6899999 76     3889999999999988754

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.87  E-value=8.5e-21  Score=160.33  Aligned_cols=209  Identities=14%  Similarity=0.175  Sum_probs=145.2

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.++++    ++++|+||||.+++   +++|.++|+++|+++|+||+|..+.+..    +.    ..+..+++.|+
T Consensus       128 ~~l~~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~----~~----~~~~di~~~s~  196 (386)
T 1cs1_A          128 QALRAALAEKPKLVLVESPSNPLLRVVD---IAKICHLAREVGAVSVVDNTFLSPALQN----PL----ALGADLVLHSC  196 (386)
T ss_dssp             HHHHHHHHTCCSEEEEECSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC----GG----GGTCSEEEEET
T ss_pred             HHHHHhhccCCcEEEEeCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccCC----cc----ccCceEEEEcC
Confidence            3455555543    88899999999986   8999999999999999999999876541    11    12356899999


Q ss_pred             ccccccCCceE-EEEEeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445           78 SKRGIVPGLRL-GWLVTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD  155 (246)
Q Consensus        78 sK~~~~~g~r~-G~i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  155 (246)
                      ||.++++|.|+ ||+++++.       ++++.+...... +...+++.++++...++.     +....+.+.++++.+.+
T Consensus       197 sK~~~~~~~~~~G~~~~~~~-------~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~l~~  264 (386)
T 1cs1_A          197 TKYLNGHSDVVAGVVIAKDP-------DVVTELAWWANNIGVTGGAFDSYLLLRGLRT-----LVPRMELAQRNAQAIVK  264 (386)
T ss_dssp             TTTTTCSSCCCCEEEEESSH-------HHHHHHHHHHHHHTCBCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHH
T ss_pred             cccccCCCCceeEEEEeCcH-------HHHHHHHHHHHhcCCCCCHHHHHHHHhcccH-----HHHHHHHHHHHHHHHHH
Confidence            99999999997 99999762       677877765433 335788888877666652     45556667788888888


Q ss_pred             HhhcCCCCccccCC----------------CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCC---------
Q 042445          156 RLKEIPCITCPKKP----------------EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGIT---------  210 (246)
Q Consensus       156 ~L~~~~~~~~~~~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~---------  210 (246)
                      .|++++.+..+..+                ..|.++.+.++.        ..+.+...+.++||.+.+.+.         
T Consensus       265 ~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~gi~~~~~~~g~~~sl~~~  336 (386)
T 1cs1_A          265 YLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDG--------DEQTLRRFLGGLSLFTLAESLGGVESLISH  336 (386)
T ss_dssp             HHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS--------CHHHHHHHHHTCSSSEEBSCCCSSSCEEEE
T ss_pred             HHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECC--------CHHHHHHHHHhCCcceEcccCCCcceeeec
Confidence            88776543321111                124555555642        234556778889998874211         


Q ss_pred             ------c----------CC-CCeEEEEeecChHHHHHHHHHHHHHHHHHh
Q 042445          211 ------V----------GL-KDWLRITFAVEPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       211 ------f----------~~-~~~iRls~~~~~~~l~~~~~~l~~~~~~~~  243 (246)
                            +          +. ++++|+|++.  ++.++.+++|.+++++..
T Consensus       337 ~~~~~~~~~~~~~~~~~g~~~~~iRis~~~--~~~~~~i~~l~~al~~~~  384 (386)
T 1cs1_A          337 AATMTHAGMAPEARAAAGISETLLRISTGI--EDGEDLIADLENGFRAAN  384 (386)
T ss_dssp             GGGTTTTTSCHHHHHHHTCCTTEEEEECCS--SCHHHHHHHHHHHHHHHT
T ss_pred             ccccccccCCHHHHHhcCCCCCeEEEEEcc--CCHHHHHHHHHHHHHHhh
Confidence                  0          11 5899999997  345666777777776543

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=99.87  E-value=3.3e-22  Score=171.52  Aligned_cols=211  Identities=12%  Similarity=0.048  Sum_probs=143.1

Q ss_pred             cccCCc-CCCccCC-ChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEE
Q 042445           12 FSDFQV-FHVGSGF-SGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLG   89 (246)
Q Consensus        12 ~~~~p~-NPtG~~~-~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G   89 (246)
                      ++.+|+ ||||.++ +.+++++|.++|++||+++|+||+|+++ ..+.. .....++...+   +.||||.+++ |+|+|
T Consensus       207 vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~~-~~~~~~~~~~d---i~s~sK~l~~-G~~~G  280 (434)
T 2epj_A          207 VIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF-RLGLE-GAQGYFNIEGD---IIVLGKIIGG-GFPVG  280 (434)
T ss_dssp             EEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTT-TSSTT-HHHHHHTCCCS---EEEEEGGGGT-TSSCE
T ss_pred             EEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhce-eCCcc-hhhHHhCCCCC---eeeecchhcC-Cccee
Confidence            666664 5799866 7999999999999999999999999987 33322 12222221112   3589999876 99999


Q ss_pred             EEEeeCCCCCcchhhHHHHHHHH----hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCC---C
Q 042445           90 WLVTSDPNGILQDSGIVDSIKIF----LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIP---C  162 (246)
Q Consensus        90 ~i~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---~  162 (246)
                      |+++++        ++++.+...    ...+++.|+++++++.++|+...+   ++..+.++++++.+.+.|+++.   +
T Consensus       281 ~v~~~~--------~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~  349 (434)
T 2epj_A          281 AVAGSR--------EVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALEE---EPVYSVSREAAKALEEAASEVLDRTG  349 (434)
T ss_dssp             EEEECH--------HHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             eeeecH--------HHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            999998        888777552    122347899999999888874221   3455666677777777776531   2


Q ss_pred             CccccCCCCceEEEEEeccccccC-------CCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHH
Q 042445          163 ITCPKKPEGSMFVMVKLNYSLLEG-------INSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRM  235 (246)
Q Consensus       163 ~~~~~~~~~g~~~~~~~~~~~~~~-------~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l  235 (246)
                      +... .+..|.++|+.++.....+       .......+...|.++||.+.|+..    .++|+++..+++++++++++|
T Consensus       350 ~~~~-~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~----~~~~~~~~~t~e~i~~~l~~l  424 (434)
T 2epj_A          350 LPYT-INRVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRRGVFIAPSNL----EAVFTGLPHQGEALEIAVEGL  424 (434)
T ss_dssp             CCEE-EEEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTT----SCEECCTTCSHHHHHHHHHHH
T ss_pred             CcEE-EEEeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHHCCeEEeccCC----CcEEEeccCCHHHHHHHHHHH
Confidence            3211 2345778888886410000       000233445556689999999752    457777667999999999999


Q ss_pred             HHHHHHHhh
Q 042445          236 KAFYDRHAE  244 (246)
Q Consensus       236 ~~~~~~~~~  244 (246)
                      .+++++...
T Consensus       425 ~~~l~~~~~  433 (434)
T 2epj_A          425 RSSLKTVLG  433 (434)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhc
Confidence            999987643

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=99.87  E-value=2.4e-21  Score=164.43  Aligned_cols=207  Identities=8%  Similarity=0.058  Sum_probs=145.3

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      |.+++.++++    ++++|+||||.+++   +++|.++|+++|+++|+|++|.....   +. .+..+   +..+++.|+
T Consensus       156 ~~l~~~l~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~g~~---~~-~~~~~---~~d~~~~s~  225 (406)
T 3cai_A          156 WQWESLISKSTRLVAVNSASGTLGGVTD---LRAMTKLVHDVGALVVVDHSAAAPYR---LL-DIRET---DADVVTVNA  225 (406)
T ss_dssp             GGHHHHCCTTEEEEEEESBCTTTCBBCC---CHHHHHHHHHTTCEEEEECTTTTTTC---CC-CHHHH---CCSEEEEEG
T ss_pred             HHHHHHhCCCceEEEEeCCcCCccccCC---HHHHHHHHHHcCCEEEEEcccccCCC---CC-Cchhc---CCCEEEeeh
Confidence            4556666543    88999999999998   78899999999999999999984321   11 12222   345889999


Q ss_pred             ccccccCCceEE-EEEeeCCCCCcchhhHHHHHHHHhh---------h-cCCCCchHHHHHHHHHhhchH----------
Q 042445           78 SKRGIVPGLRLG-WLVTSDPNGILQDSGIVDSIKIFLN---------I-SSDPATFIQGAVPQILEKTEE----------  136 (246)
Q Consensus        78 sK~~~~~g~r~G-~i~~~~~~~~~~~~~~~~~l~~~~~---------~-~~~~~~~~q~~~~~~l~~~~~----------  136 (246)
                      ||.+| ++  +| |+++++        ++++.++....         + ..+.+...+.++..+++....          
T Consensus       226 ~K~~g-~~--~G~~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~  294 (406)
T 3cai_A          226 HAWGG-PP--IGAMVFRDP--------SVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRR  294 (406)
T ss_dssp             GGGTS-CS--CEEEEESCH--------HHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHH
T ss_pred             hhhcC-CC--cCeEEEEeh--------HHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchh
Confidence            99864 54  89 999987        77776654321         1 224566666565555542111          


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCC--CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCC-
Q 042445          137 ----EFFSKIIDILRETADKCCDRLKEIPCITCPKKPE--GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGI-  209 (246)
Q Consensus       137 ----~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~-  209 (246)
                          .++++.++.++++++.+.+.|++++++.. ..|.  .+.++++.++..      +..+ +.+.|.++||.+.+|. 
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~-~~~~L~~~gi~v~~g~~  366 (406)
T 3cai_A          295 ERLAVSMQSADAYLNRVFDYLMVSLRSLPLVML-IGRPEAQIPVVSFAVHKV------PADR-VVQRLADNGILAIANTG  366 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEE-CCCCSSBCSEEEEEETTB------CHHH-HHHHHHHTTEECEECCS
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHhcCCCeEE-cCCccccCCEEEEEECCc------CHHH-HHHHHHHCCcEEecCCh
Confidence                15788889999999999999999877763 3442  133677777531      2444 4555678999999987 


Q ss_pred             -----CcCC---CCeEEEEeec--ChHHHHHHHHHHHH
Q 042445          210 -----TVGL---KDWLRITFAV--EPSALENGLGRMKA  237 (246)
Q Consensus       210 -----~f~~---~~~iRls~~~--~~~~l~~~~~~l~~  237 (246)
                           .|+.   .+++|++++.  +++++++++++|++
T Consensus       367 ~~~~~~~g~~~~~~~iRis~~~~~t~e~i~~~~~~l~~  404 (406)
T 3cai_A          367 SRVLDVLGVNDVGGAVTVGLAHYSTMAEVDQLVRALAS  404 (406)
T ss_dssp             CHHHHHHTTTTTTCCEEEECCTTCCHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCCCCCeEEEEeecCCCHHHHHHHHHHHHH
Confidence                 3332   4899999996  78899999988864

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=99.87  E-value=4.2e-22  Score=170.63  Aligned_cols=210  Identities=11%  Similarity=0.040  Sum_probs=136.9

Q ss_pred             cccCCcCCCccCC--ChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEE
Q 042445           12 FSDFQVFHVGSGF--SGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLG   89 (246)
Q Consensus        12 ~~~~p~NPtG~~~--~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G   89 (246)
                      ++++|+||+|-++  +++++++|.++|++||+++|+||+|.++ ..+..+ ....++...+   +.|+||.++ +|+|+|
T Consensus       204 vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~-r~g~~~-~~~~~~~~pd---i~t~sK~~~-~G~~~G  277 (429)
T 4e77_A          204 IIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RVALAG-AQDYYHVIPD---LTCLGKIIG-GGMPVG  277 (429)
T ss_dssp             EEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT-TTBTTC-HHHHTTCCCS---EEEEEGGGG-TTSCCE
T ss_pred             EEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc-ccCcch-HHHhcCCCCC---eeeeccccc-CCCCeE
Confidence            7788877766443  3456999999999999999999999988 544322 2222222222   358999987 799999


Q ss_pred             EEEeeCCCCCcchhhHHHHHHHH----hhhcCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhhcCCCCc
Q 042445           90 WLVTSDPNGILQDSGIVDSIKIF----LNISSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADKCCDRLKEIPCIT  164 (246)
Q Consensus        90 ~i~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~  164 (246)
                      |+++++        ++++.+...    ...+++.|++++.++.++|+... +.+.++.++.....++.+.+.+.+.+ +.
T Consensus       278 ~~~~~~--------~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~  348 (429)
T 4e77_A          278 AFGGRR--------EVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQVGVYETLTELTDSLATGLRHAAKEEN-IP  348 (429)
T ss_dssp             EEEECH--------HHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTT-CC
T ss_pred             EEEECH--------HHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCC-Cc
Confidence            999988        888877652    22344789999999999887432 23333333333333333443333443 22


Q ss_pred             cccCCCCceEEEEEecccc-ccC-------CCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHH
Q 042445          165 CPKKPEGSMFVMVKLNYSL-LEG-------INSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMK  236 (246)
Q Consensus       165 ~~~~~~~g~~~~~~~~~~~-~~~-------~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~  236 (246)
                       ...+..|+++++.++... ..+       .......+.+.|.++||.+.|+.    ...+|+++..+++++++++++|.
T Consensus       349 -~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----~~~~~~~~~~t~e~i~~~l~~l~  423 (429)
T 4e77_A          349 -LVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEEGVYLAPSA----FEAGFMSLAHSNEDIQKTVNAAR  423 (429)
T ss_dssp             -CEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHTTEECCSST----TSCEECCTTCCHHHHHHHHHHHH
T ss_pred             -eEEEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHHCCeEEeecC----CCCEEEeccCCHHHHHHHHHHHH
Confidence             223456888888876431 000       00012344555668899999875    34567776679999999999999


Q ss_pred             HHHHH
Q 042445          237 AFYDR  241 (246)
Q Consensus       237 ~~~~~  241 (246)
                      +++++
T Consensus       424 ~~l~~  428 (429)
T 4e77_A          424 RCFAK  428 (429)
T ss_dssp             HHHTT
T ss_pred             HHHHh
Confidence            98754

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=99.87  E-value=2.5e-22  Score=171.72  Aligned_cols=206  Identities=15%  Similarity=0.069  Sum_probs=139.6

Q ss_pred             cccCCcCC-CccCC-ChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEE
Q 042445           12 FSDFQVFH-VGSGF-SGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLG   89 (246)
Q Consensus        12 ~~~~p~NP-tG~~~-~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G   89 (246)
                      ++++|+|| ||.++ +.+++++|.++ ++||+++|+||+|+++ ..+.. .....++...+   +.||||.+++ |+|+|
T Consensus       203 vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~-~~g~~-~~~~~~~~~~d---i~s~sK~l~~-G~~~G  275 (424)
T 2e7u_A          203 IIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGF-RLAFG-GATELLGLKPD---LVTLGKILGG-GLPAA  275 (424)
T ss_dssp             EEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTT-TSSTT-HHHHHHTCCCS---EEEECGGGGT-TSSCE
T ss_pred             EEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcccc-ccchh-HHHHHhCCCcc---hhhhhhhhhC-CcceE
Confidence            77788776 89765 78999999999 9999999999999987 43322 22222222222   3389999974 99999


Q ss_pred             EEEeeCCCCCcchhhHHHHHHHH----hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcC---CC
Q 042445           90 WLVTSDPNGILQDSGIVDSIKIF----LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEI---PC  162 (246)
Q Consensus        90 ~i~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~  162 (246)
                      |+++++        ++++.+...    ...+++.|++++.++.++++...+  .++..+.++++++.+.+.|+++   .+
T Consensus       276 ~~~~~~--------~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~~l~~~L~~~~~~~~  345 (424)
T 2e7u_A          276 AYAGRR--------EIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEE--NPGYYAYLEDLGARLEAGLKEVLKEKG  345 (424)
T ss_dssp             EEEECH--------HHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHHH--CTHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEEcH--------HHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999998        888877652    122347899999999888874222  2445666777777777777653   13


Q ss_pred             CccccCCCCceEEEEEeccccccC-------CCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHH
Q 042445          163 ITCPKKPEGSMFVMVKLNYSLLEG-------INSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRM  235 (246)
Q Consensus       163 ~~~~~~~~~g~~~~~~~~~~~~~~-------~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l  235 (246)
                      +... .+..|.++|++++.....+       .......+.+.|.++||.+.|+..    .++|+++..+++++++++++|
T Consensus       346 ~~~~-~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~----~~~~~~~~~t~~~i~~~l~~l  420 (424)
T 2e7u_A          346 LPHT-VNRVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLDRGIYWPPSNF----EAAFLSVAHREEDVEKTLEAL  420 (424)
T ss_dssp             CCCE-EEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHTTTEECCSSSS----SCEECCTTCCHHHHHHHHHHH
T ss_pred             CceE-EEeeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHHCCeEEeccCC----CceEeeccCCHHHHHHHHHHH
Confidence            3211 2345678898886410000       000233344556689999999752    457777667999999999999


Q ss_pred             HHHH
Q 042445          236 KAFY  239 (246)
Q Consensus       236 ~~~~  239 (246)
                      .+++
T Consensus       421 ~~~l  424 (424)
T 2e7u_A          421 RKAL  424 (424)
T ss_dssp             HHHC
T ss_pred             HHhC
Confidence            8753

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=99.87  E-value=3.3e-22  Score=171.13  Aligned_cols=207  Identities=13%  Similarity=0.027  Sum_probs=134.2

Q ss_pred             cccCCcCCCccCCC-hhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSGFS-GSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~-~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      +++.++|++|.+.+ .+++++|.++|++||+++|+||+|.++ ..+..+ .....+..   ..+.|+||.++ +|+|+||
T Consensus       204 i~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~~-~~~~~~~~---~di~t~sK~~~-~G~~~G~  277 (427)
T 3fq8_A          204 ILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIAYGG-VQEKFGVT---PDLTTLGKIIG-GGLPVGA  277 (427)
T ss_dssp             EECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBTTH-HHHHTTCC---CSEEEECGGGG-TTSSCEE
T ss_pred             EEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcch-hhHhcCCC---CChhhhhhhhh-CCcceEE
Confidence            44444556676665 566999999999999999999999988 554322 22222211   12568999987 7999999


Q ss_pred             EEeeCCCCCcchhhHHHHHHHH----hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhh----cCCC
Q 042445           91 LVTSDPNGILQDSGIVDSIKIF----LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLK----EIPC  162 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~----~~~~  162 (246)
                      +++++        ++++.+...    ...+++.|+++++++.++++...+   +...+.++++.+.+.+.|+    +.+ 
T Consensus       278 ~~~~~--------~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~-  345 (427)
T 3fq8_A          278 YGGKR--------EIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQ---PGTYEYLDQITKRLSDGLLAIAQETG-  345 (427)
T ss_dssp             EEECH--------HHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred             EEEcH--------HHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCC-
Confidence            99988        888877642    223346799999999998874321   1233334444444444443    332 


Q ss_pred             CccccCCCCceEEEEEecccccc-----CCCC--hHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHH
Q 042445          163 ITCPKKPEGSMFVMVKLNYSLLE-----GINS--DMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRM  235 (246)
Q Consensus       163 ~~~~~~~~~g~~~~~~~~~~~~~-----~~~~--~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l  235 (246)
                      +. ...+..|+++++.+......     ...+  ....+.+.+.++||.+.|+..    .++|+++..+++++++++++|
T Consensus       346 ~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~v~~~~~----~r~~~~~~~t~e~i~~~l~~l  420 (427)
T 3fq8_A          346 HA-ACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQF----EAGFTSLAHTEEDIDATLAAA  420 (427)
T ss_dssp             CC-CEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTT----SCEECCTTCCHHHHHHHHHHH
T ss_pred             CC-eEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHHCCcEEecCCC----CCEEeeCcCCHHHHHHHHHHH
Confidence            22 12334578888877542110     0000  123455567788999998763    355666556999999999999


Q ss_pred             HHHHHH
Q 042445          236 KAFYDR  241 (246)
Q Consensus       236 ~~~~~~  241 (246)
                      .+++++
T Consensus       421 ~~~l~~  426 (427)
T 3fq8_A          421 RTVMSA  426 (427)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999865

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=99.87  E-value=3.2e-21  Score=166.24  Aligned_cols=213  Identities=18%  Similarity=0.133  Sum_probs=137.4

Q ss_pred             cccCCcC-CCccCCChhhHHHHHHHHHHcCCEEEEccccCC----------cccCCCCCcccc-ccCCcccEEEEccccc
Q 042445           12 FSDFQVF-HVGSGFSGSFVSPIAETAKKLGIMVIANEVYGH----------LAFGNTPFVSMG-VFGSIVPLLTLGSISK   79 (246)
Q Consensus        12 ~~~~p~N-PtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~----------~~~~~~~~~~~~-~~~~~~~~i~~~s~sK   79 (246)
                      ++++||| |||.+++.+++++|.++|++||+++|+||+|..          +.+.+..+.++. .++...+++++ |++|
T Consensus       179 ~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~-S~kk  257 (456)
T 2ez2_A          179 CLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTM-SGKK  257 (456)
T ss_dssp             EEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEE-ETTT
T ss_pred             EEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcccCCEEEE-eCcc
Confidence            7788999 999999999999999999999999999999986          345443221110 11122245555 6788


Q ss_pred             ccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhc------CCCCchHHHH-HHHHHhhchHHHH-HHHHHHHHHHHH
Q 042445           80 RGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNIS------SDPATFIQGA-VPQILEKTEEEFF-SKIIDILRETAD  151 (246)
Q Consensus        80 ~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~~~q~~-~~~~l~~~~~~~~-~~~~~~~~~~~~  151 (246)
                      . +++| +.||+++++.       ++++.+.......      .+.++....+ +...++     .+ ++..+..+++.+
T Consensus       258 ~-~~~~-~gG~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~-----~~~~~~~~~~~~~~~  323 (456)
T 2ez2_A          258 D-CLVN-IGGFLCMNDD-------EMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLRE-----AMQYEYIEHRVKQVR  323 (456)
T ss_dssp             T-TCCS-SCEEEEESCH-------HHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHH-----HTCHHHHHHHHHHHH
T ss_pred             c-CCCC-ceeEEEECCH-------HHHHHHHHHHhhccCcccccCcchhHHHHHHHHHHH-----HhHHHHHHHHHHHHH
Confidence            7 5567 7899998432       7888776543221      1233333222 222222     12 233344455566


Q ss_pred             HHHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHH-----HHHHHHhcCeEEec-CCCc------------CC
Q 042445          152 KCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEF-----ALKLAKEESVIVLP-GITV------------GL  213 (246)
Q Consensus       152 ~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-----~~~ll~~~gi~v~p-g~~f------------~~  213 (246)
                      .+.+.|++. ++. +..|.+++++|+.+..-. ++. +..++     ...++.++||.+.+ |..|            ..
T Consensus       324 ~l~~~L~~~-g~~-~~~p~~~~~~~~~~~~~~-~~~-~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~  399 (456)
T 2ez2_A          324 YLGDKLKAA-GVP-IVEPVGGHAVFLDARRFC-EHL-TQDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPK  399 (456)
T ss_dssp             HHHHHHHHT-TCC-BCSSCCSSEEEEEHHHHT-TTS-CGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCS
T ss_pred             HHHHHHhcC-CCc-cccCCCceEEEEEhHHhc-CCC-ChhhccHHHHHHHHHHhcCeeeecccccccccCccccccccCC
Confidence            777778775 665 456788999998874200 011 12223     44444788998776 4432            11


Q ss_pred             CCeEEEEee---cChHHHHHHHHHHHHHHHHHh
Q 042445          214 KDWLRITFA---VEPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       214 ~~~iRls~~---~~~~~l~~~~~~l~~~~~~~~  243 (246)
                      .+++|++++   .+++++++++++|.+++++..
T Consensus       400 ~~~iRis~~~~~~t~e~i~~~~~~l~~~l~~~~  432 (456)
T 2ez2_A          400 LETVRLTIPRRVYTYAHMDVVADGIIKLYQHKE  432 (456)
T ss_dssp             CCEEEEECCTTTCCHHHHHHHHHHHHHHHHTGG
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhhh
Confidence            479999999   589999999999999987644

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=99.87  E-value=5.9e-22  Score=170.85  Aligned_cols=207  Identities=14%  Similarity=0.058  Sum_probs=137.0

Q ss_pred             cccCCc-CCCccC-CChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEE
Q 042445           12 FSDFQV-FHVGSG-FSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLG   89 (246)
Q Consensus        12 ~~~~p~-NPtG~~-~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G   89 (246)
                      ++++|+ ||||.+ .+.+++++|.++|++||+++|+||+|+++ ..+. ......++-..+   +.|+||.+++ |+|+|
T Consensus       205 vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~-~~~~~~~~~~~d---i~s~sK~l~~-G~~~G  278 (453)
T 2cy8_A          205 FIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGN-HGMQALLDVQPD---LTCLAKASAG-GLPGG  278 (453)
T ss_dssp             EEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTT-TTCT-THHHHHHTCCCS---EEEEEGGGGT-TSSCE
T ss_pred             EEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcccc-ccCc-hhhhHHhCCCCc---EEEEChhhhC-CcceE
Confidence            666664 679975 47999999999999999999999999987 4442 222222221112   3489999875 99999


Q ss_pred             EEEeeCCCCCcchhhHHHHHHH------HhhhcCCCCchHHHHHHHHHhh-chHHHHHHHHHHHHHHHHHHHHHhhcCC-
Q 042445           90 WLVTSDPNGILQDSGIVDSIKI------FLNISSDPATFIQGAVPQILEK-TEEEFFSKIIDILRETADKCCDRLKEIP-  161 (246)
Q Consensus        90 ~i~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~-  161 (246)
                      |+++++        ++++.+..      ....+++.|++++.++.++|+. .    .++..+.++++++.+.+.|+++. 
T Consensus       279 ~v~~~~--------~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~----~~~~~~~~~~~~~~l~~~L~~~~~  346 (453)
T 2cy8_A          279 ILGGRE--------DVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTIL----EDDVCAKINDLGQFAREAMNHLFA  346 (453)
T ss_dssp             EEEECH--------HHHTTSSSCC---------CCCCHHHHHHHHHHHHHHH----HTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEechH--------HHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHHHHHHHh
Confidence            999998        88877654      1223447899999999888874 2    13344556666666666665431 


Q ss_pred             --CCccccCCCCceEEEEEecc-----c----cccCC--CC--hHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChH
Q 042445          162 --CITCPKKPEGSMFVMVKLNY-----S----LLEGI--NS--DMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPS  226 (246)
Q Consensus       162 --~~~~~~~~~~g~~~~~~~~~-----~----~~~~~--~~--~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~  226 (246)
                        ++. ...+..|.++|++++.     .    .++..  .+  ....+...|.++||.+.|+      +.+|+++..+++
T Consensus       347 ~~~~~-~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gv~v~~~------~~~~l~~~~t~~  419 (453)
T 2cy8_A          347 RKGLN-WLAYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALILEGVDIGGR------GSVFLSAQHERE  419 (453)
T ss_dssp             HTTCC-EEEECCTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHHTTEECBTT------TEEECCTTCCHH
T ss_pred             hCCCc-EEEEEeeeEEEEEEeccccccccccccccccccccHHHHHHHHHHHHHCCeEEeCC------CCEEeeccCCHH
Confidence              232 1134456788988864     1    00000  01  1233445566789999653      247777666999


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 042445          227 ALENGLGRMKAFYDRHA  243 (246)
Q Consensus       227 ~l~~~~~~l~~~~~~~~  243 (246)
                      ++++++++|.+++++..
T Consensus       420 ~i~~~l~~l~~~l~~~~  436 (453)
T 2cy8_A          420 HVEHLVTTFDRVLDRLA  436 (453)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999988764

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=99.86  E-value=1.1e-21  Score=168.97  Aligned_cols=207  Identities=14%  Similarity=0.163  Sum_probs=143.3

Q ss_pred             hhhhhc---cc---cccCC-cCCCc-cCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEc
Q 042445            4 INQDIT---RE---FSDFQ-VFHVG-SGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLG   75 (246)
Q Consensus         4 ~~~~~~---~~---~~~~p-~NPtG-~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~   75 (246)
                      +++.++   ++   ++.+| +|||| .+++.+++++|.++|++||+++|+||+|+++.+.+..+ ....++-..+   +.
T Consensus       221 le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~-~~~~~~~~~d---i~  296 (449)
T 2cjg_A          221 ARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAW-AYQQLDVAPD---IV  296 (449)
T ss_dssp             HHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS-THHHHTCCCS---EE
T ss_pred             HHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCccCcce-eecccCCCce---EE
Confidence            666663   22   55556 58999 59999999999999999999999999999887765422 2222222223   33


Q ss_pred             ccccccccCCceEEEEEeeCCCCCcchhhHHHHHH-----H-HhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 042445           76 SISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIK-----I-FLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRET  149 (246)
Q Consensus        76 s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~-----~-~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~  149 (246)
                      |+||.+     |+||+++++        ++++.+.     . ....+++.|++++.++.++|+...+   +...+.++++
T Consensus       297 t~sK~l-----~iG~~~~~~--------~~~~~l~~~~~~~~~~~~t~~~n~~~~~aa~aal~~~~~---~~~~~~~~~~  360 (449)
T 2cjg_A          297 AFGKKT-----QVCGVMAGR--------RVDEVADNVFAVPSRLNSTWGGNLTDMVRARRILEVIEA---EGLFERAVQH  360 (449)
T ss_dssp             EECGGG-----SSEEEEECG--------GGGGSTTCTTTSTTSSCCSSSSCHHHHHHHHHHHHHHHH---HTHHHHHHHH
T ss_pred             EecCcc-----cEEEEEECH--------HHhhhhhhcccCCcccccCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHH
Confidence            789997     789999988        6666421     1 1223457899999999998874322   2345666777


Q ss_pred             HHHHHHHhhc----CCC-CccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--
Q 042445          150 ADKCCDRLKE----IPC-ITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--  222 (246)
Q Consensus       150 ~~~l~~~L~~----~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--  222 (246)
                      ++.+.+.|++    ++. +. ...+. |.|++++++...     +..++.. .|.++||.+.|+.    .+++|++++  
T Consensus       361 ~~~l~~~L~~l~~~~~~~~~-~~~~~-g~~~~~~~~~~~-----~~~~~~~-~l~~~Gv~v~~~g----~~~iRi~~~~~  428 (449)
T 2cjg_A          361 GKYLRARLDELAADFPAVVL-DPRGR-GLMCAFSLPTTA-----DRDELIR-QLWQRAVIVLPAG----ADTVRFRPPLT  428 (449)
T ss_dssp             HHHHHHHHHHHHHHSTTTSE-EEEEE-TTEEEEECSSHH-----HHHHHHH-HHHHTTEECEEET----TTEEEECCCTT
T ss_pred             HHHHHHHHHHHHhhCCCcee-eEeec-cEEEEEEECChH-----HHHHHHH-HHHHCCeEEecCC----CCEEEEECCCC
Confidence            7777777764    344 43 23344 556667776421     1344544 4557899999964    689999776  


Q ss_pred             cChHHHHHHHHHHHHHHHHH
Q 042445          223 VEPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       223 ~~~~~l~~~~~~l~~~~~~~  242 (246)
                      .+++++++++++|.+++++.
T Consensus       429 ~t~e~i~~~l~~l~~~l~~~  448 (449)
T 2cjg_A          429 VSTAEIDAAIAAVRSALPVV  448 (449)
T ss_dssp             CCHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHh
Confidence            48999999999999998753

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=99.86  E-value=9e-21  Score=161.62  Aligned_cols=207  Identities=14%  Similarity=0.126  Sum_probs=141.3

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      |.+++.++++    ++++|+||||.+.+   +++|.++|+++|+++|+||+|.......    ++ .   ....+++.|+
T Consensus       157 ~~l~~ai~~~t~~v~le~p~NptG~~~~---l~~i~~la~~~g~~livDe~~~~~~~~~----~~-~---~g~div~~S~  225 (414)
T 3ndn_A          157 SQWERALSVPTQAVFFETPSNPMQSLVD---IAAVTELAHAAGAKVVLDNVFATPLLQQ----GF-P---LGVDVVVYSG  225 (414)
T ss_dssp             HHHHHHTSSCCSEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHCC----CG-G---GTCSEEEEET
T ss_pred             HHHHHhcCCCCeEEEEECCCCCCCcccc---HHHHHHHHHHcCCEEEEECCCcccccCC----ch-h---cCCCeEeccC
Confidence            4566666654    88999999999976   8899999999999999999998543221    11 1   1234889999


Q ss_pred             ccccccCC-ceEEEEEeeCCCCCcchhhHHH-HHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 042445           78 SKRGIVPG-LRLGWLVTSDPNGILQDSGIVD-SIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCC  154 (246)
Q Consensus        78 sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~-~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~  154 (246)
                      ||.++++| +++||+++++        +.+. .++.. ...+...++...+++.+.++     .+....+...++++.+.
T Consensus       226 sK~l~~~G~~~~G~vv~~~--------~~~~~~l~~~~~~~g~~~~~~~a~~~~~~l~-----~l~~r~~~~~~~a~~l~  292 (414)
T 3ndn_A          226 TKHIDGQGRVLGGAILGDR--------EYIDGPVQKLMRHTGPAMSAFNAWVLLKGLE-----TLAIRVQHSNASAQRIA  292 (414)
T ss_dssp             TTTTTCSSCCCCEEEEECH--------HHHTTHHHHHHHHHCCCCCHHHHHHHHHHGG-----GHHHHHHHHHHHHHHHH
T ss_pred             CccccCCCCceEEEEEECH--------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Confidence            99999988 8999999988        6665 56544 33344556666665555554     25556667788889999


Q ss_pred             HHhhcCCCCccccCCC----------------CceEEEEEeccc----cccCCCChHHHHHHHHHhcCeEEecCCCcC--
Q 042445          155 DRLKEIPCITCPKKPE----------------GSMFVMVKLNYS----LLEGINSDMEFALKLAKEESVIVLPGITVG--  212 (246)
Q Consensus       155 ~~L~~~~~~~~~~~~~----------------~g~~~~~~~~~~----~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~--  212 (246)
                      +.|++.|++..+..|.                .|..+++.++..    .     ...+.+.+.++..++.+.+|..+.  
T Consensus       293 ~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~-----~~~~~~~~~l~~~~~~~s~G~~~sl~  367 (414)
T 3ndn_A          293 EFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAK-----QRAFEVLDKMRLIDISNNLGDAKSLV  367 (414)
T ss_dssp             HHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHH-----HHHHHHHHHCSSSEECSCCSCSSCEE
T ss_pred             HHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccH-----HHHHHHHHhCccceEcCCCCCCCcee
Confidence            9998887765443432                577888888642    1     134444555666677777765432  


Q ss_pred             --------------------C-CCeEEEEeecChHHHHHHHHHHHHHH
Q 042445          213 --------------------L-KDWLRITFAVEPSALENGLGRMKAFY  239 (246)
Q Consensus       213 --------------------~-~~~iRls~~~~~~~l~~~~~~l~~~~  239 (246)
                                          . ++.||+|++.++  .+..++.|.+++
T Consensus       368 ~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~e~--~~dli~dl~~al  413 (414)
T 3ndn_A          368 THPATTTHRAMGPEGRAAIGLGDGVVRISVGLED--TDDLIADIDRAL  413 (414)
T ss_dssp             ECGGGTTTCTTHHHHHHHTTCCTTEEEEECCSSC--HHHHHHHHHHHH
T ss_pred             eCccccccccCCHHHHHhcCCCCCeEEEEeCcCC--HHHHHHHHHHhh
Confidence                                1 689999999732  234455555543

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=99.86  E-value=7.6e-21  Score=157.24  Aligned_cols=204  Identities=12%  Similarity=0.072  Sum_probs=135.0

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHH-cCCEEEEccccCCcccCCCCCccccccCCcccEEEEcc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKK-LGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGS   76 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s   76 (246)
                      +.+++.++++    ++++||||||.+++   +++|.++|++ +|+++|+||+|..+.+..    ++    ..+..+++.|
T Consensus        74 ~~l~~~i~~~~~~v~~~~~~nptG~~~~---~~~i~~~~~~~~~~~li~D~a~~~~~~~~----~~----~~~~d~~~~s  142 (331)
T 1pff_A           74 GNIEKHLKPNTRIVYFETPANPTLKVID---IEDAVKQARKQKDILVIVDNTFASPILTN----PL----DLGVDIVVHS  142 (331)
T ss_dssp             THHHHTCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHTTSSSCEEEEECTTTHHHHCC----GG----GGTCSEEEEE
T ss_pred             HHHHHhhcCCCeEEEEECCCCCcCcccC---HHHHHHHHhhhcCCEEEEECCCcccccCC----hh----hcCCcEEEEE
Confidence            4556666543    78899999999997   8999999999 999999999999765431    11    1346799999


Q ss_pred             cccccccCCce-EEEEEeeCCCCCcchhhHHHHHHHHhhh--cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 042445           77 ISKRGIVPGLR-LGWLVTSDPNGILQDSGIVDSIKIFLNI--SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKC  153 (246)
Q Consensus        77 ~sK~~~~~g~r-~G~i~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l  153 (246)
                      +||.|+++|.| +||+++++.       ++++.++.....  +.+.+++.+.++...+..     +....+...++.+.+
T Consensus       143 ~~K~~~~~~~r~~G~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~  210 (331)
T 1pff_A          143 ATKYINGHTDVVAGLVCSRAD-------IIAKVKSQGIKDITGAIISPHDAWLITRGTLT-----LDMRVKRAAENAQKV  210 (331)
T ss_dssp             TTTTTSSSSSCCCEEEEECHH-------HHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
T ss_pred             CccccCCCCCceEEEEEeCcH-------HHHHHHHHHHHhhcCCCCCHHHHHHHHcCcch-----HHHHHHHHHHHHHHH
Confidence            99999999999 799999753       677777765433  346788888776666652     333334445555555


Q ss_pred             HHHhhcCC--------------CCcccc--CCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCC--------
Q 042445          154 CDRLKEIP--------------CITCPK--KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGI--------  209 (246)
Q Consensus       154 ~~~L~~~~--------------~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~--------  209 (246)
                      .+.|++.+              ++..+.  ....+.++.+.++         +.+.+..++.++||.+++.+        
T Consensus       211 ~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~~gI~~~~~s~g~~~sl~  281 (331)
T 1pff_A          211 AEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD---------GLEKAKKVLDNCHVVSLAVSLGGPESLI  281 (331)
T ss_dssp             HHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS---------SHHHHHHHHHTCSSSEECSSCCSSSCEE
T ss_pred             HHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC---------CHHHHHHHHHhCCCceeccCCCCcceee
Confidence            55554322              221100  0113555666564         23446678889999886652        


Q ss_pred             -C----------------cCC-CCeEEEEeec--ChHHHHHHHHHHHH
Q 042445          210 -T----------------VGL-KDWLRITFAV--EPSALENGLGRMKA  237 (246)
Q Consensus       210 -~----------------f~~-~~~iRls~~~--~~~~l~~~~~~l~~  237 (246)
                       .                ++. ++++|+|++.  ++++++.+++.|.+
T Consensus       282 ~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~  329 (331)
T 1pff_A          282 QHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDL  329 (331)
T ss_dssp             ECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred             ecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHH
Confidence             1                112 5899999996  45556665555543

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=99.86  E-value=1.8e-20  Score=159.73  Aligned_cols=216  Identities=11%  Similarity=0.058  Sum_probs=145.4

Q ss_pred             hhhhhhhc-cc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccC-CcccCCCCCccccccCCcccEEEEc
Q 042445            2 ELINQDIT-RE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYG-HLAFGNTPFVSMGVFGSIVPLLTLG   75 (246)
Q Consensus         2 e~~~~~~~-~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~i~~~   75 (246)
                      +.+++.++ .+    ++++|+||+     ..++++|.++|++||+++|+||+|. ++.+.+..+..+..     .-+++.
T Consensus       162 ~~l~~~i~~~~~~~v~~~~~~~~~-----~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~~-----~di~~~  231 (425)
T 3ecd_A          162 DQVEALAQQHKPSLIIAGFSAYPR-----KLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVEH-----AHVVTS  231 (425)
T ss_dssp             HHHHHHHHHHCCSEEEEECSCCCS-----CCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGT-----CSEEEE
T ss_pred             HHHHHHHhhcCCcEEEEccccCCC-----cCCHHHHHHHHHHcCCEEEEECcChHhhhhcccccCchhc-----CcEEEe
Confidence            34555554 22    677788874     3457899999999999999999965 43444432222221     128899


Q ss_pred             ccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcC--CCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 042445           76 SISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISS--DPATFIQGAVPQILEKTEEEFFSKIIDILRETADKC  153 (246)
Q Consensus        76 s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l  153 (246)
                      |+||.+  +|.|.||+++++.       .+.+.+......+.  +.+.....++..++......++++.++.++++++.+
T Consensus       232 s~sK~l--~g~~~g~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l  302 (425)
T 3ecd_A          232 TTHKTL--RGPRGGFVLTNDE-------EIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQAL  302 (425)
T ss_dssp             ESSGGG--CCCSCEEEEESCH-------HHHHHHHHHHC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred             cCCccc--CCCCcEEEEeCCH-------HHHHHHHhhhCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            999996  6678999999862       56666665533221  333434444444444323456778888899999999


Q ss_pred             HHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEe----cCCCcCC--CCeEEEEeec----
Q 042445          154 CDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVL----PGITVGL--KDWLRITFAV----  223 (246)
Q Consensus       154 ~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~----pg~~f~~--~~~iRls~~~----  223 (246)
                      .+.|++. ++..+..+.+++++|+.++...     .+.+.+.+.|.++||.+.    ||..+..  .+++|+++..    
T Consensus       303 ~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~  376 (425)
T 3ecd_A          303 GDVLKAG-GVDLVTGGTDNHLLLVDLRPKG-----LKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTR  376 (425)
T ss_dssp             HHHHHHT-TCEEGGGSCSSSEEEEECGGGT-----CCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHT
T ss_pred             HHHHHhC-CCeeccCCCCceEEEEEeCCCC-----CCHHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheec
Confidence            9999885 5653333357888898876432     155667778889999999    4432222  5789999652    


Q ss_pred             --ChHHHHHHHHHHHHHHHHH
Q 042445          224 --EPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       224 --~~~~l~~~~~~l~~~~~~~  242 (246)
                        ++++++++++.|.+++++.
T Consensus       377 ~~~~e~i~~~~~~l~~~l~~~  397 (425)
T 3ecd_A          377 GFGAAEFREVGRLILEVFEAL  397 (425)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhcc
Confidence              3789999999999988765

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=99.85  E-value=3.9e-20  Score=156.96  Aligned_cols=203  Identities=13%  Similarity=0.105  Sum_probs=138.0

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      |.+++.++++    ++++|+||||.+++   +++|.++|+++|+++|+||+|..+.+..    ++ .   .+..+++.|+
T Consensus       141 ~~l~~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~~~~~~----~~-~---~~~d~~~~S~  209 (398)
T 1gc0_A          141 QALEAAMTPATRVIYFESPANPNMHMAD---IAGVAKIARKHGATVVVDNTYCTPYLQR----PL-E---LGADLVVHSA  209 (398)
T ss_dssp             HHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHGGGTCEEEEECTTTHHHHCC----GG-G---GTCSEEEEET
T ss_pred             HHHHHhcCCCCeEEEEECCCCCCccccc---HHHHHHHHHHcCCEEEEECCCcccccCC----ch-h---hCceEEEECC
Confidence            4455555544    78899999999986   8999999999999999999999766432    11 1   2345889999


Q ss_pred             ccccccCCceE-EEEEeeCCCCCcchhhHHH-HHHHHhh--hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 042445           78 SKRGIVPGLRL-GWLVTSDPNGILQDSGIVD-SIKIFLN--ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKC  153 (246)
Q Consensus        78 sK~~~~~g~r~-G~i~~~~~~~~~~~~~~~~-~l~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l  153 (246)
                      ||.++++|.|+ ||+++++        +.++ .++....  .+...+++.+.++.+.++.     +....+...++++.+
T Consensus       210 sK~~~~~~~~~~G~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~l  276 (398)
T 1gc0_A          210 TKYLSGHGDITAGIVVGSQ--------ALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKT-----LNLRMDRHCANAQVL  276 (398)
T ss_dssp             TTTTTCSSSCCCEEEEECH--------HHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHHH
T ss_pred             ccccCCCCCCeEEEEEECh--------HHHHHHHHHHhhccCCCCCCHHHHHHHHhccch-----HHHHHHHHHHHHHHH
Confidence            99999999998 9999987        6665 5554433  2346788888887777763     455566667778888


Q ss_pred             HHHhhcCCCCccccC----------------CCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEec---CCC----
Q 042445          154 CDRLKEIPCITCPKK----------------PEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLP---GIT----  210 (246)
Q Consensus       154 ~~~L~~~~~~~~~~~----------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p---g~~----  210 (246)
                      .+.|++++.+..+..                ...|.++.++++.        ..+.+..++.+.++.+..   |..    
T Consensus       277 ~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~l~~~~i~~~~~s~G~~~sl~  348 (398)
T 1gc0_A          277 AEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKG--------GIGAGRRFMNALQLFSRAVSLGDAESLA  348 (398)
T ss_dssp             HHHHHTCTTEEEEEEC----------------CCTTEEEEEETT--------HHHHHHHHHHHCSSSEECSCCSCSSCEE
T ss_pred             HHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECC--------CHHHHHHHHHhCCCceeccCCCCcceee
Confidence            888877544321111                1235555556652        334567788888888765   321    


Q ss_pred             --c----------------CC-CCeEEEEeec--ChHHHHHHHHHHH
Q 042445          211 --V----------------GL-KDWLRITFAV--EPSALENGLGRMK  236 (246)
Q Consensus       211 --f----------------~~-~~~iRls~~~--~~~~l~~~~~~l~  236 (246)
                        +                +. ++.||+|++.  ++++++.+.+.|.
T Consensus       349 ~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~  395 (398)
T 1gc0_A          349 QHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALK  395 (398)
T ss_dssp             ECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHH
T ss_pred             ecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHH
Confidence              0                11 4899999996  3444444444443

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=99.85  E-value=2.3e-20  Score=158.25  Aligned_cols=216  Identities=10%  Similarity=0.043  Sum_probs=148.8

Q ss_pred             hhhhhhhcc-c---cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITR-E---FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~-~---~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.+++ +   ++.+|+|+ |...   ++++|.++|++||+++|+||+|+.+.... +... ..+..  .-+++.|+
T Consensus       153 ~~l~~~i~~~~~~~v~~~~~~~-~~~~---~l~~i~~l~~~~~~~li~Dea~~~g~~~~-~~~~-~~~~~--~di~~~s~  224 (405)
T 2vi8_A          153 DDVREKARLHRPKLIVAAAAAY-PRII---DFAKFREIADEVGAYLMVDMAHIAGLVAA-GLHP-NPVPY--AHFVTTTT  224 (405)
T ss_dssp             HHHHHHHHHHCCSEEEECCSSC-CSCC---CHHHHHHHHHHHTCEEEEECTTTHHHHHT-TSSC-CSTTT--CSEEEEES
T ss_pred             HHHHHHHHhcCCeEEEEeCCCC-CccC---CHHHHHHHHHHcCCEEEEEcccccccccc-CcCC-Ccccc--CCEEEEec
Confidence            345555543 2   44455554 3332   48999999999999999999999543322 1111 11212  22889999


Q ss_pred             ccccc-cCCceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCC-CCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 042445           78 SKRGI-VPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSD-PATFIQGAVPQILEKTEEEFFSKIIDILRETADKCC  154 (246)
Q Consensus        78 sK~~~-~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~-~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~  154 (246)
                      ||.|+ ++|   ||+++++        ++++.+..... ...+ .++....++..++......++++.++.++++++.+.
T Consensus       225 sK~~~g~~g---G~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~  293 (405)
T 2vi8_A          225 HKTLRGPRG---GMILCQE--------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLA  293 (405)
T ss_dssp             SSTTCCCSC---EEEEECH--------HHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCCC---eEEEEcH--------HHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            99987 666   9999987        88888876542 2223 344455555566664233578889999999999999


Q ss_pred             HHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCC----cC--CCCeEEEEeec-----
Q 042445          155 DRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGIT----VG--LKDWLRITFAV-----  223 (246)
Q Consensus       155 ~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~----f~--~~~~iRls~~~-----  223 (246)
                      +.|+++ |+..+.++.+++++|+.++...   .  +...+.+.|.++||.+.||..    ++  .++++|++++.     
T Consensus       294 ~~L~~~-g~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~  367 (405)
T 2vi8_A          294 SALQNE-GFTLVSGGTDNHLLLVDLRPQQ---L--TGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRG  367 (405)
T ss_dssp             HHHHHT-TCEEGGGSCSSSEEEEECGGGT---C--CHHHHHHHHHHHTEECEEECCTTCSSCTTTCSEEEEECHHHHHTT
T ss_pred             HHHHhC-CCeEecCCCCceEEEEEccCCC---C--CHHHHHHHHHHcCceeccCcCccccCCCCCCCceEEeeeeeeecC
Confidence            999988 7763322356899999886421   1  344455667889999999863    22  25789999984     


Q ss_pred             -ChHHHHHHHHHHHHHHHHH
Q 042445          224 -EPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       224 -~~~~l~~~~~~l~~~~~~~  242 (246)
                       +++++++++++|.+++++.
T Consensus       368 ~~~~~i~~~~~~l~~~~~~~  387 (405)
T 2vi8_A          368 FGLEEMDEIAAIIGLVLKNV  387 (405)
T ss_dssp             CCHHHHHHHHHHHHHHHTCT
T ss_pred             CCHHHHHHHHHHHHHHHhcc
Confidence             7999999999999988654

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=99.85  E-value=3e-21  Score=163.43  Aligned_cols=216  Identities=11%  Similarity=-0.023  Sum_probs=128.0

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.++++    ++++||||||.+++   +++|.++|+++|+++|+||+|+.....    ..+...    ..+++.|+
T Consensus       150 ~~l~~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~----~~~~~~----~d~~~~s~  218 (400)
T 3vax_A          150 EGVMERLRPDTLLVSLMHVNNETGVIQP---VAELAQQLRATPTYLHVDAAQGYGKVP----GDLTTP----IDMISISG  218 (400)
T ss_dssp             HHHHTTCCTTEEEEECCSBCTTTCBBCC---HHHHHHHHTTSSCEEEEECTTTTTTSG----GGGGSC----CSEEEEET
T ss_pred             HHHHHhcCCCceEEEEECCCCCceeeCc---HHHHHHHHHhcCCEEEEEhhhhcCCCC----cChhhc----CcEEEEeH
Confidence            4455555544    88999999999988   789999999999999999999853321    111111    33889999


Q ss_pred             ccccccCCceEEEEE-eeCCCCCcchhhHHHHHH---HHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 042445           78 SKRGIVPGLRLGWLV-TSDPNGILQDSGIVDSIK---IFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADK  152 (246)
Q Consensus        78 sK~~~~~g~r~G~i~-~~~~~~~~~~~~~~~~l~---~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~  152 (246)
                      +|.++.+|  +|+++ +++..-...+..+...+.   .... ...+.+...+.++..++.. ...++++.++.++++++.
T Consensus       219 ~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~-~~~~~~~~~~~~~~~~~~  295 (400)
T 3vax_A          219 HKIGAPKG--VGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKI-FEAEHAQWQVAAQDLRSR  295 (400)
T ss_dssp             GGGTSCSS--CEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHH-HHHSHHHHHHHHHHHHHH
T ss_pred             HHhCCCCc--eEEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHH
Confidence            99876665  67776 665100000001111010   0011 1225577777777677763 244678899999999999


Q ss_pred             HHHHhhcCCCCccccCCCC---ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC----------------
Q 042445          153 CCDRLKEIPCITCPKKPEG---SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL----------------  213 (246)
Q Consensus       153 l~~~L~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----------------  213 (246)
                      +.+.|+ .+++.. ..+.+   +.++++.++..       +.+.+.+.|. +||.+.+|..|..                
T Consensus       296 l~~~L~-~~~~~~-~~~~~~~~~~~~~~~~~~~-------~~~~l~~~L~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~~  365 (400)
T 3vax_A          296 LLAGLA-STSFQV-NGDQDHVVPHILNLSFEDV-------DAEAFLVTLK-DLVAVATGSASTSASFTPSHVLRAMGLPE  365 (400)
T ss_dssp             HHHHHT-TTTCEE-CSCTTSBCTTEEEEECTTC-------CHHHHHHHHH-HHHHHTTTTEEEEEEECCHHHHHTTTCCH
T ss_pred             HHHhhC-CCCEEE-eCCcccCCCCEEEEEeCCC-------CHHHHHHHHh-cCcEEEecccccCCCCCccHHHHHcCCCc
Confidence            999999 778774 34443   45666656532       3344455666 9999999875532                


Q ss_pred             ---CCeEEEEe-ec--ChHHHHHHHHHHHHHHHH
Q 042445          214 ---KDWLRITF-AV--EPSALENGLGRMKAFYDR  241 (246)
Q Consensus       214 ---~~~iRls~-~~--~~~~l~~~~~~l~~~~~~  241 (246)
                         ++++|+++ +.  +++++++++++|++++++
T Consensus       366 ~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~  399 (400)
T 3vax_A          366 EAASKSLRFSWTPGQATDLDVEELARGVAKLKPS  399 (400)
T ss_dssp             HHHTSEEEEEEEEC--------------------
T ss_pred             cccCceEEEEccCCCCCHHHHHHHHHHHHHHhcc
Confidence               48999999 63  788899999999988754

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=99.85  E-value=5.8e-21  Score=159.80  Aligned_cols=196  Identities=15%  Similarity=0.086  Sum_probs=140.5

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      ++++|+||||.+++  ++++|      +|+++++|++|..+...   . .+.   ..  .+++.|+||.|+++|  +||+
T Consensus       147 ~~~~~~n~tG~~~~--~l~~i------~~~~vivD~a~~~~~~~---~-~~~---~~--d~~~~s~~K~~g~~G--~G~l  207 (362)
T 2c0r_A          147 HLTSNETIEGAQFK--AFPDT------GSVPLIGDMSSDILSRP---F-DLN---QF--GLVYAGAQKNLGPSG--VTVV  207 (362)
T ss_dssp             EEESEETTTTEECS--SCCCC------TTSCEEEECTTTTTSSC---C-CGG---GC--SEEEEETTTTTCCSS--CEEE
T ss_pred             EEeCCcCccceecc--ccccc------CCCEEEEEChhhccCCc---c-chh---HC--cEEEEeccccccCcC--cEEE
Confidence            78899999999755  34444      89999999999865421   1 122   12  277789999999888  9999


Q ss_pred             EeeCCCCCcchhhHHHHHHHH------------h-hhcCCCCchHHHHHHHHHhhchHH-HHHHHHHHHHHHHHHHHHHh
Q 042445           92 VTSDPNGILQDSGIVDSIKIF------------L-NISSDPATFIQGAVPQILEKTEEE-FFSKIIDILRETADKCCDRL  157 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~------------~-~~~~~~~~~~q~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L  157 (246)
                      ++++        ++++.+...            . ...++++...+.++..+++...+. .+++.++.++++++.+.+.|
T Consensus       208 ~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L  279 (362)
T 2c0r_A          208 IVRE--------DLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAI  279 (362)
T ss_dssp             EEEG--------GGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEcH--------HHHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence            9988        554433221            1 122367888899998888753333 68889999999999999999


Q ss_pred             hcCCCC-ccccCC--CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHH
Q 042445          158 KEIPCI-TCPKKP--EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGL  232 (246)
Q Consensus       158 ~~~~~~-~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~  232 (246)
                      ++++++ .....+  .++.++++.++...      +.+.+.+.|.++||.+.||..+  .+++|+|++.  +++++++++
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~L~~~gi~~~~g~~~--~~~iRis~~~~~~~e~i~~l~  351 (362)
T 2c0r_A          280 DQSGGFYRGCVDVDSRSDMNITFRLASEE------LEKEFVKASEQEGFVGLKGHRS--VGGLRASIYNAVPYESCEALV  351 (362)
T ss_dssp             HTSTTSSEESSCGGGBCSSEEEEECSCHH------HHHHHHHHHHHTTEESCBCCTT--TCSEEEECCTTSCHHHHHHHH
T ss_pred             HHcCCccccCCChHHcCCcEEEEEcCCcc------hHHHHHHHHHHCCCeeccCCCC--CCEEEEECCCCCCHHHHHHHH
Confidence            988535 422222  24556777775321      3344455678899999888766  5789999985  789999999


Q ss_pred             HHHHHHHHHH
Q 042445          233 GRMKAFYDRH  242 (246)
Q Consensus       233 ~~l~~~~~~~  242 (246)
                      +.|+++++++
T Consensus       352 ~~l~~~~~~~  361 (362)
T 2c0r_A          352 QFMEHFKRSR  361 (362)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999888764

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=99.85  E-value=1.2e-20  Score=160.50  Aligned_cols=208  Identities=12%  Similarity=0.069  Sum_probs=146.6

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.++++    ++++|+||||.+++   +++|.++|+++|+++|+||+|+....   +. .+..+   +..+++.|+
T Consensus       156 ~~l~~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~g~~---~~-~~~~~---~~d~~~~s~  225 (416)
T 1qz9_A          156 EELPQAIDQDTAVVMLTHVNYKTGYMHD---MQALTALSHECGALAIWDLAHSAGAV---PV-DLHQA---GADYAIGCT  225 (416)
T ss_dssp             GGHHHHCSTTEEEEEEESBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTTTTS---CC-CHHHH---TCSEEEECS
T ss_pred             HHHHHHhCCCceEEEEeccccCcccccC---HHHHHHHHHHcCCEEEEEccccccCc---CC-Chhhc---CCCEEEecC
Confidence            4566666544    88999999999988   78999999999999999999984221   11 12222   234888899


Q ss_pred             ccccccCCceE-EEEEeeCCCCCcchhhHHHHHHHH-----------------------hhh-cCCCCchHHHHHHHHHh
Q 042445           78 SKRGIVPGLRL-GWLVTSDPNGILQDSGIVDSIKIF-----------------------LNI-SSDPATFIQGAVPQILE  132 (246)
Q Consensus        78 sK~~~~~g~r~-G~i~~~~~~~~~~~~~~~~~l~~~-----------------------~~~-~~~~~~~~q~~~~~~l~  132 (246)
                      +|.+ ++|.++ ||+++++        ++++.+...                       ... .++.+...+.++..++.
T Consensus       226 ~K~l-~~g~~~~g~l~~~~--------~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~  296 (416)
T 1qz9_A          226 YKYL-NGGPGSQAFVWVSP--------QLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLD  296 (416)
T ss_dssp             SSTT-CCCTTCCCEEEECT--------TTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHH
T ss_pred             cccC-CCCCCCeEEEEECH--------HHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHH
Confidence            9995 556777 9999988        544444321                       011 12456777777767776


Q ss_pred             hchHHHHHHHHHHHHHHHHHHHHHhhcC-C--CCccccCCC----CceEEEEEeccccccCCCChHHHHHHHHHhcCeEE
Q 042445          133 KTEEEFFSKIIDILRETADKCCDRLKEI-P--CITCPKKPE----GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIV  205 (246)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~--~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v  205 (246)
                      .....++++.++.++++++.+.+.|+++ +  ++.. ..+.    .+.++|++++.        ..+ +.+.|.++||.+
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~--------~~~-l~~~l~~~gi~~  366 (416)
T 1qz9_A          297 VFAQTDMASLRRKSLALTDLFIELVEQRCAAHELTL-VTPREHAKRGSHVSFEHPE--------GYA-VIQALIDRGVIG  366 (416)
T ss_dssp             HHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEE-CSCSSGGGBCSEEEEECTT--------HHH-HHHHHHTTTEEC
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHHHHhhccCCCeEE-eCCCCHHHcCCEEEEecCC--------HHH-HHHHHHhCCcEe
Confidence            4223457788888999999999999884 6  6763 3442    35678877652        334 455566889987


Q ss_pred             ecCCCcCCCCeEEEEee---cChHHHHHHHHHHHHHHHHH
Q 042445          206 LPGITVGLKDWLRITFA---VEPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       206 ~pg~~f~~~~~iRls~~---~~~~~l~~~~~~l~~~~~~~  242 (246)
                      ...    ..+++|++++   .+++++++++++|.+++++.
T Consensus       367 ~~~----~~~~lRis~~~~~~t~~~i~~~~~~l~~~~~~~  402 (416)
T 1qz9_A          367 DYR----EPRIMRFGFTPLYTTFTEVWDAVQILGEILDRK  402 (416)
T ss_dssp             EEE----TTTEEEEECCTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             ccC----CCCeEEEeCcccCCCHHHHHHHHHHHHHHHhcc
Confidence            542    3689999997   28999999999999998764

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.85  E-value=8.9e-20  Score=155.18  Aligned_cols=216  Identities=12%  Similarity=0.058  Sum_probs=149.9

Q ss_pred             hhhhhhhc-cc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccC-CcccCCCCCccccccCCcccEEEEc
Q 042445            2 ELINQDIT-RE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYG-HLAFGNTPFVSMGVFGSIVPLLTLG   75 (246)
Q Consensus         2 e~~~~~~~-~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~i~~~   75 (246)
                      |.+++.++ .+    ++++|||  |.+.+   +++|.++|++||+++|+||+|. +..+.+.....+.     ...+++.
T Consensus       154 ~~l~~~i~~~~~~~v~~~~~~~--G~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~-----~~di~~~  223 (417)
T 3n0l_A          154 EKVREIAKKEKPKLIVCGASAY--ARVID---FAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFP-----YAHVVSS  223 (417)
T ss_dssp             HHHHHHHHHHCCSEEEECCSSC--CSCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCTT-----TCSEEEE
T ss_pred             HHHHHHHHhcCCeEEEECCccc--CccCC---HHHHHHHHHHcCCEEEEECccchhhhhcccCCCccc-----cceEEEe
Confidence            45555555 22    7677765  77777   8899999999999999999965 4444432222221     1338899


Q ss_pred             ccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhc--CCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 042445           76 SISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNIS--SDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKC  153 (246)
Q Consensus        76 s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l  153 (246)
                      |+||.+  +|.|.||+++++.       ++.+.+......+  .++++..+.++..++.......+++.++.++++++.+
T Consensus       224 s~sK~l--~g~~~G~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l  294 (417)
T 3n0l_A          224 TTHKTL--RGPRGGIIMTNDE-------ELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVL  294 (417)
T ss_dssp             ESSTTT--CSCSCEEEEESCH-------HHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred             eCcccc--CCCCeeEEEECCH-------HHHHHHhhhhCCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            999986  7788899999842       7888887664322  2344555555555555323356678888889999999


Q ss_pred             HHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC------CCeEEEEee-----
Q 042445          154 CDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL------KDWLRITFA-----  222 (246)
Q Consensus       154 ~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~------~~~iRls~~-----  222 (246)
                      .+.|++. ++.....+..++++|+.+....     .+.+.+.++|.++||.+.++..+..      .+.+|+++.     
T Consensus       295 ~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~  368 (417)
T 3n0l_A          295 ANVLMDR-KFKLVSDGTDNHLVLMSFLDRE-----FSGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTAR  368 (417)
T ss_dssp             HHHHHHT-TCEEGGGSCSSSEEEEECTTSS-----SCHHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHT
T ss_pred             HHHHHhC-CceeccCCCCceEEEEEcccCC-----CCHHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhC
Confidence            9999884 6654333456778888776432     1456677788899999987653321      467999976     


Q ss_pred             -cChHHHHHHHHHHHHHHHHH
Q 042445          223 -VEPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       223 -~~~~~l~~~~~~l~~~~~~~  242 (246)
                       .+++++++++++|.+++++.
T Consensus       369 ~~~~~~i~~~~~~l~~~l~~~  389 (417)
T 3n0l_A          369 GFKEKEMEIVSNYIADILDDV  389 (417)
T ss_dssp             TCCHHHHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHHHhcc
Confidence             25799999999999988653

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=99.85  E-value=6.1e-20  Score=158.09  Aligned_cols=216  Identities=13%  Similarity=0.069  Sum_probs=147.8

Q ss_pred             hhhhhhhc---cc--cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccC-CcccCCCCCccccccCCcccEEEEc
Q 042445            2 ELINQDIT---RE--FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYG-HLAFGNTPFVSMGVFGSIVPLLTLG   75 (246)
Q Consensus         2 e~~~~~~~---~~--~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~i~~~   75 (246)
                      |.+++.+.   .+  ++++|+||++.     ++++|.++|++||+++|+||+|. ++.+.+..+.++   ..  .-+++.
T Consensus       175 ~~l~~~i~~~~~~~i~~~~~~~~~~~-----~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~---~~--~di~~~  244 (447)
T 3h7f_A          175 DAVRATALEFRPKVIIAGWSAYPRVL-----DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPV---PH--ADVVST  244 (447)
T ss_dssp             HHHHHHHHHHCCSEEEEECSSCCSCC-----CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST---TT--CSEEEE
T ss_pred             HHHHHHHHhcCCeEEEEcCCCCCCcc-----CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCC---CC--CcEEEe
Confidence            34555553   23  66689999876     68999999999999999999975 444443222222   11  127799


Q ss_pred             ccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhh-cC-CCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 042445           76 SISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNI-SS-DPATFIQGAVPQILEKTEEEFFSKIIDILRETADKC  153 (246)
Q Consensus        76 s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~-~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l  153 (246)
                      |+||.+  +|+|.||+++++        ++++.+...... +. +++...+.++..++....+.++++.++.+.++++.+
T Consensus       245 s~sK~l--~G~~gG~i~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l  314 (447)
T 3h7f_A          245 TVHKTL--GGGRSGLIVGKQ--------QYAKAINSAVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARII  314 (447)
T ss_dssp             ESSGGG--CCCSCEEEEECG--------GGHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred             cCCcCC--CCCCeEEEEECH--------HHHHHHhhhcCCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Confidence            999986  478899999988        888888765332 22 233333555555555333446788888899999999


Q ss_pred             HHHhhcC----CCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEe----cCCC--cCCCCeEEEEee-
Q 042445          154 CDRLKEI----PCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVL----PGIT--VGLKDWLRITFA-  222 (246)
Q Consensus       154 ~~~L~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~----pg~~--f~~~~~iRls~~-  222 (246)
                      .+.|++.    +|+..+..+.+++++|+++....     .+.+.+..+++++||.+.    |+..  ...++++|++.. 
T Consensus       315 ~~~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~  389 (447)
T 3h7f_A          315 ADRLMAPDVAKAGVSVVSGGTDVHLVLVDLRDSP-----LDGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPA  389 (447)
T ss_dssp             HHHHTSHHHHHTTCEEGGGSCSSSEEEEECTTSS-----CCHHHHHHHHHHTTEECBC-------------CEEEEECHH
T ss_pred             HHHHHhccccCCCeEEecCCCCCCEEEEEcCCCC-----CCHHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHH
Confidence            9999875    45654334467888888876432     156667788888999998    6532  223788999875 


Q ss_pred             -----cChHHHHHHHHHHHHHHHHH
Q 042445          223 -----VEPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       223 -----~~~~~l~~~~~~l~~~~~~~  242 (246)
                           .++++++++++.|.+++++.
T Consensus       390 ~~~~~~~~eei~~~~~~l~~~l~~~  414 (447)
T 3h7f_A          390 LATRGFGDTEFTEVADIIATALATG  414 (447)
T ss_dssp             HHHHTCCHHHHHHHHHHHHHHHHSG
T ss_pred             HhhCCCCHHHHHHHHHHHHHHHhcc
Confidence                 36789999999999988654

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=99.84  E-value=2.8e-20  Score=157.83  Aligned_cols=213  Identities=15%  Similarity=0.150  Sum_probs=144.1

Q ss_pred             hhhhhhhccc--cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcc-cCCCCCccccccCCcccEEEEccc-
Q 042445            2 ELINQDITRE--FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLA-FGNTPFVSMGVFGSIVPLLTLGSI-   77 (246)
Q Consensus         2 e~~~~~~~~~--~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~-~~~~~~~~~~~~~~~~~~i~~~s~-   77 (246)
                      +.+++.++++  .+ .|+||||.+.+   +++|.++|+++|+++|+||+|+.+. +++..   +..+    ..+++.|+ 
T Consensus       142 ~~l~~~i~~~~~~v-~~~n~tG~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~---~~~~----~di~~~S~~  210 (399)
T 2oga_A          142 LLVEKAITPRTRAL-LPVHLYGHPAD---MDALRELADRHGLHIVEDAAQAHGARYRGRR---IGAG----SSVAAFSFY  210 (399)
T ss_dssp             HHHHHHCCTTEEEE-CCBCGGGCCCC---HHHHHHHHHHHTCEECEECTTCTTCEETTEE---TTCT----TCEEEEECC
T ss_pred             HHHHHhcCCCCeEE-EEeCCcCCccC---HHHHHHHHHHcCCEEEEECcccccCccCCee---cccc----cCEEEEeCC
Confidence            3455555543  22 26799999876   8999999999999999999998764 33221   1111    13778888 


Q ss_pred             -ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhh-------------cCCCCchHHHHHHHHHhhchHHHHHHHH
Q 042445           78 -SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNI-------------SSDPATFIQGAVPQILEKTEEEFFSKII  143 (246)
Q Consensus        78 -sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~~~q~~~~~~l~~~~~~~~~~~~  143 (246)
                       ||.++.+| |.||+++++.       ++++.+......             ...++++.+.++...++.     +++..
T Consensus       211 ~sK~~~~~G-~~g~~~~~~~-------~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~-----~~~~~  277 (399)
T 2oga_A          211 PGKNLGCFG-DGGAVVTGDP-------ELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAH-----LDSWN  277 (399)
T ss_dssp             TTSSSCCSS-CCEEEEESCH-------HHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHT-----HHHHH
T ss_pred             CCccCCcCC-ceEEEEeCCH-------HHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHH-----HHHHH
Confidence             79998889 9999999742       787777665332             124567777666666652     33445


Q ss_pred             HHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcC-----------
Q 042445          144 DILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG-----------  212 (246)
Q Consensus       144 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~-----------  212 (246)
                      +..+++++.+.+.|++++++.....|+++.++|+.++...     .+.+.+.+.|.++||.+.++....           
T Consensus       278 ~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~  352 (399)
T 2oga_A          278 GRRSALAAEYLSGLAGLPGIGLPVTAPDTDPVWHLFTVRT-----ERRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEA  352 (399)
T ss_dssp             HHHHHHHHHHHHHTTTCTTCBCCCCCTTEECCCSSEEEEC-----SSHHHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTS
T ss_pred             HHHHHHHHHHHHHhccCCCccccCCCCCCcceeEEEEEEC-----CCHHHHHHHHHHCCCceecCCCCccccchhhcccC
Confidence            5566778888889988877764345666776663332211     133445556778999998754211           


Q ss_pred             C------------CCeEEEEeec--ChHHHHHHHHHHHHHHHHHh
Q 042445          213 L------------KDWLRITFAV--EPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       213 ~------------~~~iRls~~~--~~~~l~~~~~~l~~~~~~~~  243 (246)
                      .            .+++|+++..  ++++++++++.|+++++++.
T Consensus       353 ~~~~~~p~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~l~  397 (399)
T 2oga_A          353 PPEGSLPRAESFARQVLSLPIGPHLERPQALRVIDAVREWAERVD  397 (399)
T ss_dssp             CCTTSCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHHHSCC
T ss_pred             CCCCCChhHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            0            2679999884  89999999999999987654

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=99.84  E-value=1.3e-19  Score=153.28  Aligned_cols=205  Identities=15%  Similarity=0.135  Sum_probs=139.2

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.++++    ++++|+||||.+++   +++|.++|+++|+++|+||+|..+.+..    ++.    .+..+++.|+
T Consensus       135 ~~l~~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~~~~~~~~~livD~~~~~~~~~~----~~~----~~~di~~~S~  203 (389)
T 3acz_A          135 EKVKAAWKPNTKMVYLESPANPTCKVSD---IKGIAVVCHERGARLVVDATFTSPCFLK----PLE----LGADIALHSV  203 (389)
T ss_dssp             HHHHHTCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTTCC----GGG----TTCSEEEEET
T ss_pred             HHHHHhcCCCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCccccccC----ccc----cCCeEEEECC
Confidence            4455556543    78899999999997   8999999999999999999999765421    121    2355899999


Q ss_pred             ccccccCCceE-EEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445           78 SKRGIVPGLRL-GWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD  155 (246)
Q Consensus        78 sK~~~~~g~r~-G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  155 (246)
                      ||.++++|.|+ ||+++++.       ++++.++.... .+...++..+.++.+.++.     +....+...++++.+.+
T Consensus       204 sK~~~~~~~~~~G~v~~~~~-------~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~-----l~~r~~~~~~~~~~l~~  271 (389)
T 3acz_A          204 SKYINGHGDVIGGVSSAKTA-------EDIATIKFYRKDAGSLMAPMDAFLCARGMKT-----LPIRMQIHMENGLKVAK  271 (389)
T ss_dssp             TTTTTCSSCCCCEEEEESSH-------HHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHH
T ss_pred             hhhccCCCCceeEEEEECcH-------HHHHHHHHHHHhcCCCCCHHHHHHHHcCccH-----HHHHHHHHHHHHHHHHH
Confidence            99999999998 99999763       56777766543 3445677877777777763     33334455566666677


Q ss_pred             HhhcCCCCccccC----------------CCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEec---C------CC
Q 042445          156 RLKEIPCITCPKK----------------PEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLP---G------IT  210 (246)
Q Consensus       156 ~L~~~~~~~~~~~----------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p---g------~~  210 (246)
                      .|++.+.+..+..                ...|.++.+.++.         .+.+..++.+.|+.+.+   |      ..
T Consensus       272 ~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~---------~~~~~~~l~~~~i~~~~~s~G~~~sl~~~  342 (389)
T 3acz_A          272 FLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKS---------FEAAKKLMEHLKVCTLAVSLGCVDTLIEH  342 (389)
T ss_dssp             HHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS---------HHHHHHHHTTCSSSEEBSCCCCSSCEEEC
T ss_pred             HHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECC---------HHHHHHHHHhCCCcEECcCCCCcccEeeC
Confidence            7765432221111                1124555666642         34456778888998877   3      22


Q ss_pred             cC----------------C-CCeEEEEeecChHHHHHHHHHHHHHHH
Q 042445          211 VG----------------L-KDWLRITFAVEPSALENGLGRMKAFYD  240 (246)
Q Consensus       211 f~----------------~-~~~iRls~~~~~~~l~~~~~~l~~~~~  240 (246)
                      |.                . ++.||+|++.+  +.++.++.|.++++
T Consensus       343 ~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~~--~~~~li~~l~~al~  387 (389)
T 3acz_A          343 PASMTHAAVPENIMRKQGITPELVRISVGIE--NVDDIIADLKQALE  387 (389)
T ss_dssp             TTTTTTSSSCHHHHHHHTCCTTEEEEECCSS--CHHHHHHHHHHHHT
T ss_pred             CcccccccCCHHHHHhcCCCcCeEEEEeccC--CHHHHHHHHHHHHh
Confidence            21                1 47999999864  45666777777664

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=99.84  E-value=2.3e-19  Score=152.45  Aligned_cols=207  Identities=14%  Similarity=0.170  Sum_probs=136.3

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcC-CEEEEccccCCcccCCCCCccccccCCcccEEEEcc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLG-IMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGS   76 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~-~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s   76 (246)
                      |.+++.++++    ++++|+||||.+++   +++|.++|+++| +++|+||+|..+.+.. +   +.    .+..+++.|
T Consensus       142 ~~l~~~i~~~t~~v~~~~p~nptG~~~~---l~~i~~la~~~g~~~livD~~~~~~~~~~-~---~~----~~~div~~S  210 (403)
T 3cog_A          142 KLLEAAITPETKLVWIETPTNPTQKVID---IEGCAHIVHKHGDIILVVDNTFMSPYFQR-P---LA----LGADISMYS  210 (403)
T ss_dssp             HHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHTSSSCCEEEEECTTTCTTTCC-T---TT----TTCSEEEEE
T ss_pred             HHHHHhcCcCCeEEEEECCCCCCCeeeC---HHHHHHHHHHcCCCEEEEECCCcccccCC-c---cc----cCCeEEEEc
Confidence            4455556544    88999999999997   899999999999 9999999999876431 1   11    235699999


Q ss_pred             cccccccCC-ceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 042445           77 ISKRGIVPG-LRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCC  154 (246)
Q Consensus        77 ~sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~  154 (246)
                      +||.++++| .|+||+++++.       ++++.++.... .+...+++.+.++.+.++.     +....+...++...+.
T Consensus       211 ~sK~~~g~~~~~~G~v~~~~~-------~l~~~l~~~~~~~g~~~~~~~~~~~~~~l~~-----l~~r~~~~~~n~~~l~  278 (403)
T 3cog_A          211 ATKYMNGHSDVVMGLVSVNCE-------SLHNRLRFLQNSLGAVPSPIDCYLCNRGLKT-----LHVRMEKHFKNGMAVA  278 (403)
T ss_dssp             TTTTTTCSSCCCCEEEEECCH-------HHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHH
T ss_pred             ChhhccCCCCCeEEEEEECcH-------HHHHHHHHHHHhcCCCCCHHHHHHHHhhhhH-----HHHHHHHHHHHHHHHH
Confidence            999999876 57999999642       78888876644 3445788888888887774     3333444455555555


Q ss_pred             HHhhcC--------------CCCcccc---CCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEec---CC-----
Q 042445          155 DRLKEI--------------PCITCPK---KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLP---GI-----  209 (246)
Q Consensus       155 ~~L~~~--------------~~~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p---g~-----  209 (246)
                      +.|++.              |++..+.   ...++++.| .++.        ..+...+++.+.||.+..   |.     
T Consensus       279 ~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~-~l~~--------~~~~~~~~l~~~~i~~~~~s~G~~~sl~  349 (403)
T 3cog_A          279 QFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTF-YIKG--------TLQHAEIFLKNLKLFTLAESLGGFESLA  349 (403)
T ss_dssp             HHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEE-EESS--------CHHHHHHHHHHCSSSEECSCCSSSSCEE
T ss_pred             HHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEE-EecC--------CHHHHHHHHHhCCcceEccCCCCcceee
Confidence            555443              2222110   112555555 5653        224456677788885542   21     


Q ss_pred             -----Cc------------CC-CCeEEEEeecChHHHHHHHHHHHHHHHHH
Q 042445          210 -----TV------------GL-KDWLRITFAVEPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       210 -----~f------------~~-~~~iRls~~~~~~~l~~~~~~l~~~~~~~  242 (246)
                           .+            +. ++++|+|++.+  +.++.++.|.+++++.
T Consensus       350 ~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e--~~~d~i~~l~~al~~~  398 (403)
T 3cog_A          350 ELPAIMTHASVLKNDRDVLGISDTLIRLSVGLE--DEEDLLEDLDQALKAA  398 (403)
T ss_dssp             ECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSS--CHHHHHHHHHHHHHHH
T ss_pred             ecccccccccCCHHHHHhcCCCcCeEEEEeCCC--CHHHHHHHHHHHHHHh
Confidence                 11            12 57999999972  2345566666666554

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=99.84  E-value=9e-20  Score=156.52  Aligned_cols=209  Identities=11%  Similarity=0.068  Sum_probs=142.2

Q ss_pred             hhhhhhhcc---c--cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcc
Q 042445            2 ELINQDITR---E--FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGS   76 (246)
Q Consensus         2 e~~~~~~~~---~--~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s   76 (246)
                      +.+++.+++   +  ++++|+||||.+.+   +++|.++|+++|+++|+|++|..+....    +. .+   +..+++.|
T Consensus       190 ~~l~~ai~~~tv~lV~le~p~NptG~v~d---l~~I~~la~~~g~~livD~a~~~~~~~~----~~-~~---g~Div~~S  258 (445)
T 1qgn_A          190 GALELALNQKKVNLFFTESPTNPFLRCVD---IELVSKLCHEKGALVCIDGTFATPLNQK----AL-AL---GADLVLHS  258 (445)
T ss_dssp             HHHHHHHHHSCEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC----TT-TT---TCSEEEEC
T ss_pred             HHHHHHhccCCCCEEEEeCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccCC----cc-cc---CCEEEEEC
Confidence            345555543   3  78999999999987   7899999999999999999998654221    11 12   23488999


Q ss_pred             cccccccCC-ceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 042445           77 ISKRGIVPG-LRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCC  154 (246)
Q Consensus        77 ~sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~  154 (246)
                      +||.++++| .++||+++++        ++++.+..... .+...+++...++.+.++.     +....+...++++.+.
T Consensus       259 ~sK~~gg~gd~~~G~l~~~~--------~l~~~l~~~~~~~g~~~~~~~a~~~~~~l~~-----l~~r~~~~~~~a~~l~  325 (445)
T 1qgn_A          259 ATKFLGGHNDVLAGCISGPL--------KLVSEIRNLHHILGGALNPNAAYLIIRGMKT-----LHLRVQQQNSTALRMA  325 (445)
T ss_dssp             TTTTTTCSSSCCCEEEEECH--------HHHHHHHHHHHHHCCCCCHHHHHHHHHHGGG-----HHHHHHHHHHHHHHHH
T ss_pred             CcccccccccceEEEEEECH--------HHHHHHHHHHHHhCCCCCHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHH
Confidence            999998766 5899999988        88888876543 3434577666666555552     4445556677788899


Q ss_pred             HHhhcCCCCccccCC----------------CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcC------
Q 042445          155 DRLKEIPCITCPKKP----------------EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG------  212 (246)
Q Consensus       155 ~~L~~~~~~~~~~~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~------  212 (246)
                      +.|+++|++..+..|                ..|.++++.++...     ++...+...++..++.+..|..+.      
T Consensus       326 ~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~-----~~~~~~l~~l~~~~i~~s~G~~~sl~~~p~  400 (445)
T 1qgn_A          326 EILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDL-----LTTAKFVDALKIPYIAPSFGGCESIVDQPA  400 (445)
T ss_dssp             HHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCH-----HHHHHHHHHCSSSEECSCCCSSSCEEECHH
T ss_pred             HHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCH-----HHHHHHHHhCCCceEeccCCCCceeeeccc
Confidence            999888776323333                14667777776321     122333333444467777776542      


Q ss_pred             ----------------C-CCeEEEEeecChHHHHHHHHHHHHHHHH
Q 042445          213 ----------------L-KDWLRITFAVEPSALENGLGRMKAFYDR  241 (246)
Q Consensus       213 ----------------~-~~~iRls~~~~~~~l~~~~~~l~~~~~~  241 (246)
                                      . ++.||+|++.  |+++.+++.|.+++++
T Consensus       401 ~~~h~~~~~~~~~~~g~~~~~iRlSvG~--Edid~li~~L~~al~~  444 (445)
T 1qgn_A          401 IMSYWDLSQSDRAKYGIMDNLVRFSFGV--EDFDDLKADILQALDS  444 (445)
T ss_dssp             HHHSTTSCHHHHHTTTCCSSEEEEECCS--SCHHHHHHHHHHHHHH
T ss_pred             ccccccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHHHhh
Confidence                            1 4799999994  3578888888887754

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=99.84  E-value=1.6e-20  Score=162.80  Aligned_cols=213  Identities=14%  Similarity=0.033  Sum_probs=150.0

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.+.++    ++++| ||||.+.  +++++|.++|++||+++|+|++|..+.++.  . ....+   +..+++.|+
T Consensus       194 ~~L~~~i~~~t~~v~~~~p-n~~G~~~--~~l~~i~~l~~~~g~~li~Dea~~~~~~g~--~-~~~~~---g~di~~~s~  264 (474)
T 1wyu_B          194 EALKRELGPHVAALMLTNP-NTLGLFE--RRILEISRLCKEAGVQLYYDGANLNAIMGW--A-RPGDM---GFDVVHLNL  264 (474)
T ss_dssp             HHHHHHCSTTEEEEEECSS-CTTSCCC--TTHHHHHHHHHHHTCEEEEEGGGGGGTTTT--C-CHHHH---TCSEEECCT
T ss_pred             HHHHHhhCCCceEEEEECC-CCCcccC--CCHHHHHHHHHHcCCEEEEeCchhhhhccC--C-CcccC---CCcEEEEeC
Confidence            4556666543    77888 7999872  469999999999999999999998665431  1 11112   245888899


Q ss_pred             ccccccC-C---ceEEEEEeeCCCCCcchhhHHHHHHH-Hh------------------h-hcCCCCchHHHHHHHHHhh
Q 042445           78 SKRGIVP-G---LRLGWLVTSDPNGILQDSGIVDSIKI-FL------------------N-ISSDPATFIQGAVPQILEK  133 (246)
Q Consensus        78 sK~~~~~-g---~r~G~i~~~~~~~~~~~~~~~~~l~~-~~------------------~-~~~~~~~~~q~~~~~~l~~  133 (246)
                      +|.|++| |   .|+||+++++        ++++.+.. ..                  . ..+..+++.+.++..++..
T Consensus       265 ~K~~~~p~g~gG~~~G~~~~~~--------~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~  336 (474)
T 1wyu_B          265 HKTFTVPHGGGGPGSGPVGVKA--------HLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRT  336 (474)
T ss_dssp             TTTTCCCCTTSCCCCCCEEECG--------GGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHH
T ss_pred             ccccccCCCCCCCCeEEEEEcH--------HHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHH
Confidence            9999877 4   5999999998        66655531 00                  0 1123577778888888875


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceE--EEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCc
Q 042445          134 TEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMF--VMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITV  211 (246)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f  211 (246)
                      ...+++++..+.+.++++.+.+.|+++ |+.. ..+. +.+  +|+.++..    . +..++. +.|.++||.+ |+..|
T Consensus       337 ~g~~~l~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~-~~~~~~~~~~~~~----~-~~~~l~-~~L~~~Gi~~-~~~~~  406 (474)
T 1wyu_B          337 LGLEGLKKAAALAVLNARYLKELLKEK-GYRV-PYDG-PSMHEFVAQPPEG----F-RALDLA-KGLLELGFHP-PTVYF  406 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHT-TCBC-SSCS-SCCSCEEEBCSTT----C-CHHHHH-HHHHHTTCCC-CEESC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhc-CcEe-cCCC-CcceEEEEEcCCC----C-CHHHHH-HHHHHCCccc-ccccc
Confidence            446778888999999999999999987 6663 2222 233  56555221    1 344554 4555779974 66666


Q ss_pred             CC--CCeEEEEeec--ChHHHHHHHHHHHHHHHH
Q 042445          212 GL--KDWLRITFAV--EPSALENGLGRMKAFYDR  241 (246)
Q Consensus       212 ~~--~~~iRls~~~--~~~~l~~~~~~l~~~~~~  241 (246)
                      +.  .+++|++++.  +.+++++++++|++++++
T Consensus       407 ~~~~~~~lRis~~~~~t~e~id~~~~~L~~~~~~  440 (474)
T 1wyu_B          407 PLIVKEALMVEPTETEAKETLEAFAEAMGALLKK  440 (474)
T ss_dssp             STTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTS
T ss_pred             ccccCCEEEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence            42  6899999996  889999999999988753

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=99.84  E-value=1.3e-19  Score=153.43  Aligned_cols=208  Identities=17%  Similarity=0.122  Sum_probs=144.1

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.++++    ++.+|+||||.+.+   +++|.++|+++|+++|+||+|+.+....    +. .+   ...+++.|+
T Consensus       142 ~~l~~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~g~~li~D~~~~~~~~~~----~~-~~---~~di~~~S~  210 (392)
T 3qhx_A          142 DAVRAAIRPTTRLIWVETPTNPLLSIAD---IAGIAQLGADSSAKVLVDNTFASPALQQ----PL-SL---GADVVLHST  210 (392)
T ss_dssp             HHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTTCC----GG-GG---TCSEEEEET
T ss_pred             HHHHHhhCCCCeEEEEECCCCCCcEEec---HHHHHHHHHHcCCEEEEECCCcccccCC----hH-Hh---CCcEEEEcC
Confidence            4556666554    78899999999977   8999999999999999999998543221    11 11   234889999


Q ss_pred             ccccccCC-ceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445           78 SKRGIVPG-LRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD  155 (246)
Q Consensus        78 sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  155 (246)
                      ||.++++| .++||+++++.       ++.+.+..... .+...+++.+.++.+.++.     +....+...++++.+.+
T Consensus       211 sK~lg~~g~~~~G~v~~~~~-------~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~-----l~~~~~~~~~~~~~l~~  278 (392)
T 3qhx_A          211 TKYIGGHSDVVGGALVTNDE-------ELDQSFAFLQNGAGAVPGPFDAYLTMRGLKT-----LVLRMQRHSENAAAVAE  278 (392)
T ss_dssp             TTTTTCSSCCCCEEEEESCH-------HHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHH
T ss_pred             ccccCCCCCceEEEEEECcH-------HHHHHHHHHHHhcCCCCCHHHHHHHHhhhhH-----HHHHHHHHHHHHHHHHH
Confidence            99999887 89999999853       77777776643 4557888888888877774     44555666788888888


Q ss_pred             HhhcCCCCccccCCC----------------CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcC-------
Q 042445          156 RLKEIPCITCPKKPE----------------GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG-------  212 (246)
Q Consensus       156 ~L~~~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~-------  212 (246)
                      .|++.+.+..+..|.                .|..+++.++...     ...+.+...++..|+.+..|..+.       
T Consensus       279 ~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~-----~~~~~~~~~l~~~~~~~s~G~~~sl~~~~~~  353 (392)
T 3qhx_A          279 FLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGR-----TAAEQLCAKTNIFILAESLGSVESLIEHPSA  353 (392)
T ss_dssp             HHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCH-----HHHHHHHHHCSSSEECSCCCCSSCEEECGGG
T ss_pred             HHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcH-----HHHHHHHHhCCCceECCCCCCCCceeeCccc
Confidence            888876654332221                2667788886421     134444555666677777665432       


Q ss_pred             -------------CCCeEEEEeecChHHHHHHHHHHHHHH
Q 042445          213 -------------LKDWLRITFAVEPSALENGLGRMKAFY  239 (246)
Q Consensus       213 -------------~~~~iRls~~~~~~~l~~~~~~l~~~~  239 (246)
                                   .++.||||++.+  +.++.++.|.+++
T Consensus       354 ~~~~~~~~~~~g~~~~~iRlSvg~e--~~~~~i~~l~~al  391 (392)
T 3qhx_A          354 MTHASTAGSQLEVPDDLVRLSVGIE--DVADLLDDLKQAL  391 (392)
T ss_dssp             TSCGGGBTTBCCCCTTEEEEECCSS--CHHHHHHHHHHHH
T ss_pred             ccccccCHHHcCCCCCeEEEEeccC--CHHHHHHHHHHHh
Confidence                         157799999863  3344555555544

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.84  E-value=9.5e-20  Score=154.40  Aligned_cols=137  Identities=14%  Similarity=0.075  Sum_probs=101.7

Q ss_pred             hhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHc----CCEEEEccccCCcccCCCCCccccccCCcccEEEE
Q 042445            3 LINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKL----GIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTL   74 (246)
Q Consensus         3 ~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~----~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~   74 (246)
                      .+++.++++    ++++||||||.+++   +++|.++|+++    |+++|+||+|..+.+. . +   ..+   +..+++
T Consensus       130 ~l~~~i~~~t~lv~~~~~~nptG~~~~---l~~i~~la~~~~~~~~~~livD~a~~~~~~~-~-~---~~~---~~di~~  198 (393)
T 1n8p_A          130 DLPQLIKENTKLVWIETPTNPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTFLSPYIS-N-P---LNF---GADIVV  198 (393)
T ss_dssp             HHHHHSCSSEEEEEECSSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTTTHHHHC-C-G---GGG---TCSEEE
T ss_pred             HHHHhcccCceEEEEECCCCCcceecC---HHHHHHHHHHhCCCCCCEEEEeCCccccccC-C-H---HHc---CCeEEE
Confidence            455556543    78899999999997   89999999999    9999999999987653 1 1   112   355999


Q ss_pred             cccccccccCCceE-EEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 042445           75 GSISKRGIVPGLRL-GWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADK  152 (246)
Q Consensus        75 ~s~sK~~~~~g~r~-G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~  152 (246)
                      .|+||.++++|+|+ ||+++++.       ++++.+..... .+...++..+.++...+..     +....+...++++.
T Consensus       199 ~S~sK~~g~~G~rigG~~~~~~~-------~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~  266 (393)
T 1n8p_A          199 HSATKYINGHSDVVLGVLATNNK-------PLYERLQFLQNAIGAIPSPFDAWLTHRGLKT-----LHLRVRQAALSANK  266 (393)
T ss_dssp             EETTTTTTCSSCCCCEEEEESCH-------HHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHH
T ss_pred             EECcccccCCCCceeEEEEeCCH-------HHHHHHHHHHHhcCCCCCHHHHHHHHhccch-----HHHHHHHHHHHHHH
Confidence            99999999999999 99998532       78888876643 3445677776666566653     44555666777888


Q ss_pred             HHHHhhcCCC
Q 042445          153 CCDRLKEIPC  162 (246)
Q Consensus       153 l~~~L~~~~~  162 (246)
                      +.+.|++.+.
T Consensus       267 l~~~L~~~~~  276 (393)
T 1n8p_A          267 IAEFLAADKE  276 (393)
T ss_dssp             HHHHHTSCTT
T ss_pred             HHHHHHhCCC
Confidence            8888877654

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=99.84  E-value=1.5e-19  Score=153.91  Aligned_cols=217  Identities=10%  Similarity=0.022  Sum_probs=143.1

Q ss_pred             hhhhhhhcc---c--cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcc-cCCCCCccccccCCcccEEEEc
Q 042445            2 ELINQDITR---E--FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLA-FGNTPFVSMGVFGSIVPLLTLG   75 (246)
Q Consensus         2 e~~~~~~~~---~--~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~-~~~~~~~~~~~~~~~~~~i~~~   75 (246)
                      |.+++.+++   +  ++++||||+  ..+   +++|.++|++||+++|+||+|.... ..+.....+.     ...+++.
T Consensus       159 ~~l~~~i~~~~~~~v~~~~~~~~~--~~~---l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~-----~~di~~~  228 (420)
T 3gbx_A          159 DEMAKLAKEHKPKMIIGGFSAYSG--VVD---WAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVP-----HAHVVTT  228 (420)
T ss_dssp             HHHHHHHHHHCCSEEEECCTTCCS--CCC---HHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCSTT-----TSSEEEE
T ss_pred             HHHHHHHHhcCCeEEEEecCccCC--ccC---HHHHHHHHHHcCCEEEEECCcchhceecccCCcccc-----cCCEEEe
Confidence            345555543   2  777898874  333   8899999999999999999986443 3332121111     1338899


Q ss_pred             ccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcC--CCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 042445           76 SISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISS--DPATFIQGAVPQILEKTEEEFFSKIIDILRETADKC  153 (246)
Q Consensus        76 s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l  153 (246)
                      |+||.++  |.+.||+++++.  ..   ++.+.+......+.  +.+...+.++..++....+.++++.++.++++++.+
T Consensus       229 s~sK~~~--g~~gg~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l  301 (420)
T 3gbx_A          229 TTHKTLA--GPRGGLILAKGG--DE---ELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAM  301 (420)
T ss_dssp             ESSGGGC--SCSCEEEEESSC--CH---HHHHHHHHHHC----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred             ecccCCC--CCCceEEEEcCC--cH---HHHHHhhhhcCCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Confidence            9999985  444599999861  00   55566655432221  333444444444444333456788889999999999


Q ss_pred             HHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEec-------CCCcCCCCeEEEEeec---
Q 042445          154 CDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLP-------GITVGLKDWLRITFAV---  223 (246)
Q Consensus       154 ~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p-------g~~f~~~~~iRls~~~---  223 (246)
                      .+.|++. ++..+..+.+++++|+.++...     .+.+.+.++|.++||.+.|       +..|+ .+.+|+++..   
T Consensus       302 ~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~-~~~iRi~~~~~~~  374 (420)
T 3gbx_A          302 VEVFLNR-GYKVVSGGTENHLFLLDLVDKN-----LTGKEADAALGRANITVNKNSVPNDPKSPFV-TSGIRIGSPAVTR  374 (420)
T ss_dssp             HHHHHHT-TCEEGGGSCSSSEEEEECGGGT-----CCHHHHHHHHHHTTEECEEECCTTCSSCTTT-CSEEEEECHHHHH
T ss_pred             HHHHHhc-CCeeccCCCCCeEEEEEcCCCC-----CCHHHHHHHHHHCCcEeccccCCCCccccCC-CcceEEecchhcc
Confidence            9999885 6664333367888888876432     1556677788899999998       33232 4569999873   


Q ss_pred             ---ChHHHHHHHHHHHHHHHHH
Q 042445          224 ---EPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       224 ---~~~~l~~~~~~l~~~~~~~  242 (246)
                         ++++++++++.|.+++++.
T Consensus       375 ~~~~~~~i~~~~~~l~~~l~~~  396 (420)
T 3gbx_A          375 RGFKEAEVKELAGWMCDVLDNI  396 (420)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHTT
T ss_pred             cCCCHHHHHHHHHHHHHHHhCc
Confidence               4688999999998887653

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=99.83  E-value=1.6e-19  Score=152.37  Aligned_cols=213  Identities=11%  Similarity=0.079  Sum_probs=142.0

Q ss_pred             hhhhhhhccc--cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcc-cCCCCCccccccCCcccEEEEcccc
Q 042445            2 ELINQDITRE--FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLA-FGNTPFVSMGVFGSIVPLLTLGSIS   78 (246)
Q Consensus         2 e~~~~~~~~~--~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~-~~~~~~~~~~~~~~~~~~i~~~s~s   78 (246)
                      +.+++.++++  .+. |+||||.+.+   +++|.++|++||+++|+|++|+.+. +.+.   .+..++    .+.+.|||
T Consensus       117 ~~l~~~i~~~~~~v~-~~n~tG~~~~---l~~i~~la~~~~~~li~D~a~~~g~~~~~~---~~~~~~----~i~~~S~s  185 (388)
T 1b9h_A          117 EAVAAAVTPRTKVIM-PVHMAGLMAD---MDALAKISADTGVPLLQDAAHAHGARWQGK---RVGELD----SIATFSFQ  185 (388)
T ss_dssp             HHHHHHCCTTEEEEC-CBCGGGCCCC---HHHHHHHHHHHTCCBCEECTTCTTCEETTE---EGGGSS----SCEEEECC
T ss_pred             HHHHHhcCcCceEEE-EeCCccCcCC---HHHHHHHHHHcCCEEEEecchhcCCccCCe---eccccc----ceEEEEcc
Confidence            3455555544  332 9999999865   7899999999999999999999643 3322   122221    47889999


Q ss_pred             cccccCCceEEEEEeeCCCCCcchhhH--HHHHHHHhhhc--------------C--CCCchHHHHHHHHHhhchHHHHH
Q 042445           79 KRGIVPGLRLGWLVTSDPNGILQDSGI--VDSIKIFLNIS--------------S--DPATFIQGAVPQILEKTEEEFFS  140 (246)
Q Consensus        79 K~~~~~g~r~G~i~~~~~~~~~~~~~~--~~~l~~~~~~~--------------~--~~~~~~q~~~~~~l~~~~~~~~~  140 (246)
                      |..+++|.|+||+++++.       .+  ++.++.....+              +  .++++...+   ++.  ..++++
T Consensus       186 ~~K~l~g~~~G~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~---~~~--~~~~l~  253 (388)
T 1b9h_A          186 NGKLMTAGEGGAVVFPDG-------ETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASV---LRA--QLARLD  253 (388)
T ss_dssp             TTSSSCSSSCEEEEECTT-------CHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHH---HHH--HHTTHH
T ss_pred             CCCcccCCCeEEEEECCH-------HHHHHHHHHHHHhCCCCccCccceeecccccCCcCHHHHHH---HHH--HHHHHH
Confidence            777677779999999872       35  56665432210              0  123332222   222  234566


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCccccC-----CCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcC---
Q 042445          141 KIIDILRETADKCCDRLKEIPCITCPKK-----PEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG---  212 (246)
Q Consensus       141 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~-----~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~---  212 (246)
                      +..+.++++++.+.+.|++++++.....     +.+++++|++++...    ..+.+.+.+.|.++||.+.++....   
T Consensus       254 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~L~~~gI~v~~~~~~~~~~  329 (388)
T 1b9h_A          254 EQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLT----EERRNALVDRLVEAGLPAFAAFRAIYRT  329 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCC----HHHHHHHHHHHHHTTCCEEECCCCGGGS
T ss_pred             HHHHHHHHHHHHHHHHhccCCCccccCCCcCCCccceEEEEEEeCCcC----cccHHHHHHHHHHCCCCcccccCccccC
Confidence            7778888899999999998877764321     356899999886420    0033445556668899998865321   


Q ss_pred             -------------------C-------CCeEEEEee--c-ChHHHHHHHHHHHHHHHH
Q 042445          213 -------------------L-------KDWLRITFA--V-EPSALENGLGRMKAFYDR  241 (246)
Q Consensus       213 -------------------~-------~~~iRls~~--~-~~~~l~~~~~~l~~~~~~  241 (246)
                                         .       .+.+|+++.  . ++++++.+++.|.+++++
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~edi~~~~~~l~~~~~~  387 (388)
T 1b9h_A          330 DAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADAVAR  387 (388)
T ss_dssp             HHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             hHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCCCHHHHHHHHHHHHHHHhh
Confidence                               0       236999987  4 789999999999988754

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=99.83  E-value=1.3e-19  Score=156.58  Aligned_cols=209  Identities=20%  Similarity=0.177  Sum_probs=132.9

Q ss_pred             cccCCcCCC-ccCCChhhHHHHHHHHHHcCCEEEEccccCC--c--------ccCCCCCccccccC----CcccEEEEcc
Q 042445           12 FSDFQVFHV-GSGFSGSFVSPIAETAKKLGIMVIANEVYGH--L--------AFGNTPFVSMGVFG----SIVPLLTLGS   76 (246)
Q Consensus        12 ~~~~p~NPt-G~~~~~~~~~~l~~~~~~~~~~ii~De~y~~--~--------~~~~~~~~~~~~~~----~~~~~i~~~s   76 (246)
                      ++++||||| |.+++.+++++|.++|++||+++|+||++..  .        .+.+.   ++..+.    .... +++.|
T Consensus       188 i~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~d-~~~~s  263 (467)
T 1ax4_A          188 VSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNA---TIKEVIFDMYKYAD-ALTMS  263 (467)
T ss_dssp             EEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTC---CHHHHHHHHGGGCS-EEEEE
T ss_pred             EEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCC---chhhhhhhhccccc-eEEEe
Confidence            788999999 8999999999999999999999999998653  1        12221   111111    1112 45689


Q ss_pred             cccccccC-CceEEEEEeeCCCCCcchhhHHHHHHHHhhh-----cCCC-CchHHHHHHHHHhhch-HHHHHHHHHHHHH
Q 042445           77 ISKRGIVP-GLRLGWLVTSDPNGILQDSGIVDSIKIFLNI-----SSDP-ATFIQGAVPQILEKTE-EEFFSKIIDILRE  148 (246)
Q Consensus        77 ~sK~~~~~-g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~-~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~  148 (246)
                      +||.++++ |   ||+++++..      ++++.+......     ..+. +.....++...+.... +..++    ...+
T Consensus       264 ~sK~~g~~~G---g~~~~~d~~------~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~----~~~~  330 (467)
T 1ax4_A          264 AKKDPLLNIG---GLVAIRDNE------EIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLH----YRIG  330 (467)
T ss_dssp             TTSTTCCSSC---EEEEESSCH------HHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTCHHHHH----HHHH
T ss_pred             ccccCCCCcc---eEEEeCCHH------HHHHHHHhhccccccccccCCccchHHHHHHHHHHHhhhhhHHH----HHHH
Confidence            99998876 5   677776410      355555443221     1122 2222233333444221 12222    2336


Q ss_pred             HHHHHHHHhhcCCCCccccCCCCceEEEEE-------eccccccCCCChHHHHHHHHHhcCeEEec-CCCc-------C-
Q 042445          149 TADKCCDRLKEIPCITCPKKPEGSMFVMVK-------LNYSLLEGINSDMEFALKLAKEESVIVLP-GITV-------G-  212 (246)
Q Consensus       149 ~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~-------~~~~~~~~~~~~~~~~~~ll~~~gi~v~p-g~~f-------~-  212 (246)
                      +++.+.+.|++ +++. +..|.+|+++|++       ++...   . +..+++..++.++||.+.| |..+       + 
T Consensus       331 ~~~~l~~~L~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~  404 (467)
T 1ax4_A          331 QVKYLGDRLRE-AGIP-IQYPTGGHAVFVDCKKLVPQIPGDQ---F-PAQAVINALYLESGVRAVEIGSFLLGRDPATGE  404 (467)
T ss_dssp             HHHHHHHHHHH-TTCC-BCSSCCSSEEEEESTTTCTTSCGGG---C-HHHHHHHHHHHHHCEECEEESHHHHCBCTTTCS
T ss_pred             HHHHHHHHHHh-CCCC-cccCCCceEEEEehhhhccccccCC---C-CHHHHHHHHHHhcCceeeecCcccccccccccc
Confidence            67788888877 4666 4578889999988       32111   1 2445555554899999999 5432       1 


Q ss_pred             ----CCCeEEEEee---cChHHHHHHHHHHHHHHHHHh
Q 042445          213 ----LKDWLRITFA---VEPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       213 ----~~~~iRls~~---~~~~~l~~~~~~l~~~~~~~~  243 (246)
                          ..+++||++.   .+++++++++++|.+++++..
T Consensus       405 ~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~~~  442 (467)
T 1ax4_A          405 QKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKFA  442 (467)
T ss_dssp             BCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHHT
T ss_pred             ccccccceEEEecccccCCHHHHHHHHHHHHHHHHhhh
Confidence                1379999998   489999999999999887643

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=99.83  E-value=1.4e-19  Score=158.34  Aligned_cols=218  Identities=11%  Similarity=0.071  Sum_probs=146.2

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccC-----CCCCccccccCCcccEE
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFG-----NTPFVSMGVFGSIVPLL   72 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~-----~~~~~~~~~~~~~~~~i   72 (246)
                      +.+++.++++    ++++|+||||.+.+   +++|.++|++||+++|+||+|+++.+.     +.+...+. ....+..+
T Consensus       230 ~~Le~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~-~~~~g~d~  305 (514)
T 3mad_A          230 AAMREAITPNTVVVAGSAPGYPHGVVDP---IPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFD-FRLEGVTS  305 (514)
T ss_dssp             HHHHHHCCTTEEEEEEETTCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCS-TTSTTCCE
T ss_pred             HHHHHHhccCCEEEEEeCCCCCCccccC---HHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCccc-ccCCCCcE
Confidence            4566666544    88999999999987   789999999999999999999987652     11111111 12223457


Q ss_pred             EEcccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHH-h---------hh--cCCCCchHHHHHHHHHhhchHHHHH
Q 042445           73 TLGSISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIF-L---------NI--SSDPATFIQGAVPQILEKTEEEFFS  140 (246)
Q Consensus        73 ~~~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~-~---------~~--~~~~~~~~q~~~~~~l~~~~~~~~~  140 (246)
                      ++.|++|. +.++.++||+++++        +........ .         ..  ..+.+.....++..++.......++
T Consensus       306 ~~~s~~K~-l~~~~~~g~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~~~~  376 (514)
T 3mad_A          306 VSADTHKY-GYGAKGTSVILYRR--------PDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYL  376 (514)
T ss_dssp             EEECTTTT-TCCCSSCEEEEESS--------HHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEECchhc-cCCCCCeEEEEEeC--------HHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHHHHH
Confidence            88899999 46778899999988        554432211 0         00  1122222223333344322345678


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEE
Q 042445          141 KIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRIT  220 (246)
Q Consensus       141 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls  220 (246)
                      +..+...++++.+.+.|++++++.. ..+.. .++++..+..       +...+.+.|.++||.+ +|..|  ++++|++
T Consensus       377 ~~~~~~~~~~~~l~~~L~~~~g~~~-~~~~~-~~~~~~~~~~-------~~~~l~~~L~~~Gi~v-~g~~~--~~~~Ri~  444 (514)
T 3mad_A          377 DATRRILQAADRLKAGVRAIPSLKI-LGDPL-WVIAVASDEL-------NIYQVMEEMAGRGWRL-NGLHR--PPAFHVA  444 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSTTCEE-SSCCS-SEEEEECSSS-------CHHHHHHHHHTTTCBC-EEETT--TTEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCeEE-eCCCe-EEEEEeCCCC-------CHHHHHHHHHhcCCEe-ccCCC--CCeEEEE
Confidence            8888889999999999999888874 33333 3666544321       3344556677889987 54443  6789999


Q ss_pred             eec---ChHHHHHHHHHHHHHHHHHhh
Q 042445          221 FAV---EPSALENGLGRMKAFYDRHAE  244 (246)
Q Consensus       221 ~~~---~~~~l~~~~~~l~~~~~~~~~  244 (246)
                      +..   +++++++++++|++++++..+
T Consensus       445 ~~~~~~~~e~i~~~l~~L~~~l~~~~~  471 (514)
T 3mad_A          445 LTLRHTEPGVVDRFLADLQDAVAQVRA  471 (514)
T ss_dssp             CCGGGGSTTHHHHHHHHHHHHHHHHHH
T ss_pred             EecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            983   568999999999999987653

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=99.82  E-value=1e-18  Score=151.80  Aligned_cols=221  Identities=12%  Similarity=0.056  Sum_probs=148.0

Q ss_pred             hhhhhhhc-cc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccC-CcccCCCCCccccccCCcccEEEEc
Q 042445            2 ELINQDIT-RE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYG-HLAFGNTPFVSMGVFGSIVPLLTLG   75 (246)
Q Consensus         2 e~~~~~~~-~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~i~~~   75 (246)
                      |.+++.++ ++    ++ +++||+ .+++   +++|.++|+++|+++++|++|. ++...+....++.   .  ..+++.
T Consensus       183 d~le~~i~~~~tklIi~-~~sn~~-~~~d---l~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~---~--~div~~  252 (483)
T 1rv3_A          183 DRLEENARLFHPKLIIA-GTSCYS-RNLD---YGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE---H--CHVVTT  252 (483)
T ss_dssp             HHHHHHHHHHCCSEEEE-CCSSCC-SCCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG---T--CSEEEE
T ss_pred             HHHHHHHhhcCCcEEEE-eCCcCC-CcCC---HHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCC---C--CcEEEe
Confidence            45666665 33    45 777888 7766   8899999999999999999987 3333332222221   1  237889


Q ss_pred             ccccccccCCceEEEEEeeCCCCCcc-------hhhHHHHHHHHhh--hcCCCCchHHHHHHHHHhhchHHHHHHHHHHH
Q 042445           76 SISKRGIVPGLRLGWLVTSDPNGILQ-------DSGIVDSIKIFLN--ISSDPATFIQGAVPQILEKTEEEFFSKIIDIL  146 (246)
Q Consensus        76 s~sK~~~~~g~r~G~i~~~~~~~~~~-------~~~~~~~l~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~  146 (246)
                      |++|.+  +|.|.||+++++......       .-++.+.+.....  ...+++.....++..++.......+++.++++
T Consensus       253 s~~K~l--~GprgG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~  330 (483)
T 1rv3_A          253 TTHKTL--RGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQV  330 (483)
T ss_dssp             ESSGGG--CCCSCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred             cCcccC--CCCCceEEEEcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHH
Confidence            999985  577889999987310000       0013334433321  12234444555556666643334678888899


Q ss_pred             HHHHHHHHHHhhcCCCCccccCCC-CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEe----cCCCcCC-CCeEEEE
Q 042445          147 RETADKCCDRLKEIPCITCPKKPE-GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVL----PGITVGL-KDWLRIT  220 (246)
Q Consensus       147 ~~~~~~l~~~L~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~----pg~~f~~-~~~iRls  220 (246)
                      .++++.+.+.|+++ |+.. ..+. +.+++|+.+....   .  +.+.+.++|.+.||.+.    ||..+.. ++++|++
T Consensus       331 ~~~~~~l~~~L~~~-g~~~-~~~~~~~~~~~v~~~~~g---~--~~~~~~~~L~~~gI~v~~~~~pg~~~~~~~~~iRis  403 (483)
T 1rv3_A          331 VANCRALSAALVEL-GYKI-VTGGSDNHLILVDLRSKG---T--DGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLG  403 (483)
T ss_dssp             HHHHHHHHHHHHHT-TCEE-GGGSCSSSEEEEEGGGGT---C--CHHHHHHHHHHTTEECEEECCSSCSCTTSCCEEEEE
T ss_pred             HHHHHHHHHHHHhc-CCEe-ccCCCCCceEEEeccCCC---C--CHHHHHHHHHhCCcEEecCCCCCCCcCCCCceEEee
Confidence            99999999999987 7764 3332 4578888886432   1  34445777889999999    8874332 7899999


Q ss_pred             eec--C----hHHHHHHHHHHHHHHHH
Q 042445          221 FAV--E----PSALENGLGRMKAFYDR  241 (246)
Q Consensus       221 ~~~--~----~~~l~~~~~~l~~~~~~  241 (246)
                      +..  +    +++++++++.|.++++.
T Consensus       404 ~~~~~t~g~~~edi~~~~~~l~~~l~~  430 (483)
T 1rv3_A          404 TPALTSRGLLEKDFQKVAHFIHRGIEL  430 (483)
T ss_dssp             CHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence            984  5    89999999999998865

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=99.82  E-value=1e-19  Score=157.25  Aligned_cols=225  Identities=16%  Similarity=0.160  Sum_probs=138.4

Q ss_pred             hhhhhhhcc----c----cccCCcCCC-ccCCChhhHHHHHHHHHHcCCEEEEccccCC----------cccCCCCCccc
Q 042445            2 ELINQDITR----E----FSDFQVFHV-GSGFSGSFVSPIAETAKKLGIMVIANEVYGH----------LAFGNTPFVSM   62 (246)
Q Consensus         2 e~~~~~~~~----~----~~~~p~NPt-G~~~~~~~~~~l~~~~~~~~~~ii~De~y~~----------~~~~~~~~~~~   62 (246)
                      |.+++.+++    +    ++++||||| |.+++.+++++|.++|++||+++|+|+++..          ..+.+.....+
T Consensus       170 ~~Le~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~  249 (467)
T 2oqx_A          170 EGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQI  249 (467)
T ss_dssp             HHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHH
T ss_pred             HHHHHHHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHH
Confidence            455666652    2    788899998 9999999999999999999999999965543          12222211111


Q ss_pred             cc--cCCcccEEEEcccccccccC-CceEEEEEeeCCCCCcchhh-HHH---HHHHHhhhcCC---CCchHHHHHHHHHh
Q 042445           63 GV--FGSIVPLLTLGSISKRGIVP-GLRLGWLVTSDPNGILQDSG-IVD---SIKIFLNISSD---PATFIQGAVPQILE  132 (246)
Q Consensus        63 ~~--~~~~~~~i~~~s~sK~~~~~-g~r~G~i~~~~~~~~~~~~~-~~~---~l~~~~~~~~~---~~~~~q~~~~~~l~  132 (246)
                      ..  .... . +++.|+||.++++ |   ||+++++        + +++   .++.....+.+   .+...+.++. ++.
T Consensus       250 ~~~~~~~~-d-~~~~s~sK~~g~~~G---g~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-al~  315 (467)
T 2oqx_A          250 TRETYKYA-D-MLAMSAKKDAMVPMG---GLLCMKD--------DSFFDVYTECRTLCVVQEGFPTYGGLEGGAME-RLA  315 (467)
T ss_dssp             HHHHGGGC-S-EEEEESSSTTCCSSC---EEEEECS--------GGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHH-HHH
T ss_pred             hhhhhccC-C-eEEEecccccCCCCc---eEEEecC--------hhHHHHHHHHHHhhhccCCcccccchhhhHHH-HHH
Confidence            10  0112 2 3478999999877 5   8888877        5 444   33332211111   1122222221 222


Q ss_pred             hchHHHHH-HHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEecc--ccccCCC-ChHHHHHHHHHhcCeEEecC
Q 042445          133 KTEEEFFS-KIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNY--SLLEGIN-SDMEFALKLAKEESVIVLPG  208 (246)
Q Consensus       133 ~~~~~~~~-~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~-~~~~~~~~ll~~~gi~v~pg  208 (246)
                      ...+.+++ +..+...++++.+.+.|+++ ++. +. |.+++++|++++.  ....... +..+++..++.++||.+.|+
T Consensus       316 ~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~  392 (467)
T 2oqx_A          316 VGLYDGMNLDWLAYRIAQVQYLVDGLEEI-GVV-CQ-QAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEI  392 (467)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHHHT-TCC-EE-EECSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEE
T ss_pred             HhhHhhhhHHHHHHHHHHHHHHHHHHHHC-CCe-ee-cCCceEEEEechhhcccCCcccccHHHHHHHHHHhcCceeccc
Confidence            11122221 23344567888899999887 676 34 7789999988752  1110000 02223444448999999995


Q ss_pred             CCc--C-----------CCCeEEEEee---cChHHHHHHHHHHHHHHHHHh
Q 042445          209 ITV--G-----------LKDWLRITFA---VEPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       209 ~~f--~-----------~~~~iRls~~---~~~~~l~~~~~~l~~~~~~~~  243 (246)
                      ..|  +           ..+++|++++   .+++++++++++|.+++++..
T Consensus       393 ~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~~~~  443 (467)
T 2oqx_A          393 GSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAA  443 (467)
T ss_dssp             SHHHHCBCTTTCSBCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHHHHSGG
T ss_pred             ccccccccccccccccCccCeEEEEecCCCCCHHHHHHHHHHHHHHHhhhh
Confidence            532  1           1379999998   679999999999999987654

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=99.82  E-value=5.1e-20  Score=153.45  Aligned_cols=203  Identities=10%  Similarity=0.053  Sum_probs=133.4

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccC-CcccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFG-SIVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      ++++| ||||.+++.+++++|.++|++||+++|+||+|.++.++..+. ....+. ....-++..|.+|. +.+ ..+|+
T Consensus       150 ~~~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~-~~~~~~~~~~~d~~~~s~~K~-g~~-~~~g~  225 (359)
T 1svv_A          150 YISNT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVN-DLTLADIARLTDMFYIGATKA-GGM-FGEAL  225 (359)
T ss_dssp             EEESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTC-CCCHHHHHHHCSEEEEECTTT-TCS-SCEEE
T ss_pred             EEEcC-CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCc-chhhhhhhhcCCEEEEecccC-CCC-CceEE
Confidence            77888 899999999999999999999999999999995543322111 111110 01122677789997 443 56899


Q ss_pred             EEeeCCCCCcchhhHHHHHHHHh---hhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccc
Q 042445           91 LVTSDPNGILQDSGIVDSIKIFL---NISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPK  167 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~  167 (246)
                      +++++        ++++.+....   ......+......+..++..   ...++.++.++++++.+.+.| +.+++. +.
T Consensus       226 l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~l~~~L-~~~~~~-~~  292 (359)
T 1svv_A          226 IILND--------ALKPNARHLIKQRGALMAKGWLLGIQFEVLMKD---NLFFELGAHSNKMAAILKAGL-EACGIR-LA  292 (359)
T ss_dssp             EECSG--------GGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTST---THHHHHHHHHHHHHHHHHHHH-HHTTCC-BS
T ss_pred             EEEcc--------cHHHHHHHHHhcCCcccccchhhHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHh-ccCCeE-Ec
Confidence            99877        6665555432   11112222233333445553   245678888899999999999 556776 45


Q ss_pred             CCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHH
Q 042445          168 KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       168 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~  242 (246)
                      .|.+++++|++++          .++...+++++||.+.+. ....++++|++++.  +++++++++++|++++++.
T Consensus       293 ~~~~~~~~~~~~~----------~~~~~~l~~~~gi~v~~~-~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  358 (359)
T 1svv_A          293 WPSASNQLFPILE----------NTMIAELNNDFDMYTVEP-LKDGTCIMRLCTSWATEEKECHRFVEVLKRLVAST  358 (359)
T ss_dssp             SCCSSSEECBEEE----------HHHHHHHTTTEECEEEEE-ETTTEEEEEEECCTTCCHHHHHHHHHHHHHC----
T ss_pred             cCCccceEEEEcC----------HHHHHHHHHhcCEEEEec-ccCCCceEEEEccCcCCHHHHHHHHHHHHHHHhcc
Confidence            6788999987653          245555444449998331 11136799999873  8999999999999887653

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=99.81  E-value=2.1e-18  Score=146.92  Aligned_cols=209  Identities=15%  Similarity=0.154  Sum_probs=134.5

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.++++    ++++|+||||.+.+   +++|.++|++||+++|+||+|+.+.+...   +.    ..+..+++.|+
T Consensus       131 ~~l~~~i~~~~~~v~~~~~~n~~G~~~~---l~~i~~l~~~~~~~li~D~~~~~~~~~~~---~~----~~~~di~~~S~  200 (412)
T 2cb1_A          131 EAVREALSAKTRAVFVETVANPALLVPD---LEALATLAEEAGVALVVDNTFGAAGALCR---PL----AWGAHVVVESL  200 (412)
T ss_dssp             HHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGGTTTTSCC---GG----GGTCSEEEEET
T ss_pred             HHHHHHhccCCeEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEECCCccccccCC---cc----ccCCeEEEECC
Confidence            4566666554    78899999999986   89999999999999999999987632211   11    12356899999


Q ss_pred             ccccccCCceEEEEEeeCCCCC------c--------------chhhHHHHHHHHh-h-hcCCCCchHHHHHHHHHhhch
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGI------L--------------QDSGIVDSIKIFL-N-ISSDPATFIQGAVPQILEKTE  135 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~------~--------------~~~~~~~~l~~~~-~-~~~~~~~~~q~~~~~~l~~~~  135 (246)
                      +|.++++|.|+|++++.+....      +              ...++.+.++... . .+...++...+++...++.  
T Consensus       201 ~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~--  278 (412)
T 2cb1_A          201 TKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVRTLGLSLCGMALSPFNAYLLFQGLET--  278 (412)
T ss_dssp             TTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHHHHHHHHTTTTCCCCCHHHHHHHHHHGGG--
T ss_pred             cccccCCCCcEEEEEEeccccccccccccccccccccchhhccchHHHHHHHHHHHHHhcCCCCChHHhHHHHcCCch--
Confidence            9999999999999988763100      0              0002344444432 2 2223455555554444442  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC----------------CCceEEEEEeccccccCCCChHHHHHHHHH
Q 042445          136 EEFFSKIIDILRETADKCCDRLKEIPCITCPKKP----------------EGSMFVMVKLNYSLLEGINSDMEFALKLAK  199 (246)
Q Consensus       136 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~  199 (246)
                         +....+...++.+.+.+.|.+.+++..+..|                ..+.++.+.+ .        +.+.+..++.
T Consensus       279 ---l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~-~--------~~~~~~~~l~  346 (412)
T 2cb1_A          279 ---VALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDL-G--------DLERASRFLG  346 (412)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEEC-S--------SHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEe-C--------CHHHHHHHHH
Confidence               3444455667888899999888777633222                2345566666 2        3445677788


Q ss_pred             hcCeEEecCC---------CcC----------------C-CCeEEEEeec--ChHHHHHHHHHH
Q 042445          200 EESVIVLPGI---------TVG----------------L-KDWLRITFAV--EPSALENGLGRM  235 (246)
Q Consensus       200 ~~gi~v~pg~---------~f~----------------~-~~~iRls~~~--~~~~l~~~~~~l  235 (246)
                      +.||.+ .++         .|.                . ++.||+|++.  ++++++.+.+.|
T Consensus       347 ~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~g~~~~~~~i~~l~~al  409 (412)
T 2cb1_A          347 AIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDPLDLLALFEEAL  409 (412)
T ss_dssp             HCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred             hCCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHH
Confidence            899998 663         221                0 5789999996  344455544444

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=99.81  E-value=3.8e-19  Score=155.04  Aligned_cols=216  Identities=9%  Similarity=0.010  Sum_probs=144.8

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccC-----CCCCccccccCCcccEE
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFG-----NTPFVSMGVFGSIVPLL   72 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~-----~~~~~~~~~~~~~~~~i   72 (246)
                      +.+++.+.++    ++++|+||||.+.+   +++|.++|++||+++|+|++|+++...     +.+..+.......+..+
T Consensus       197 ~~l~~~i~~~~~~v~~~~p~nptG~~~~---l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~d~  273 (497)
T 3mc6_A          197 GKVKKFINKNTVLLVGSAPNFPHGIADD---IEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTS  273 (497)
T ss_dssp             TTTGGGCCSSEEEEEEETTCTTTCCCCS---CTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTCCE
T ss_pred             HHHHHHHhhCCEEEEEECCCCCCCcCCC---HHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCCcE
Confidence            5566666654    88999999999977   668888999999999999999965432     11111101111222347


Q ss_pred             EEcccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHh-hhcC-----CCC---------chHHHHHHHHHhhchHH
Q 042445           73 TLGSISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFL-NISS-----DPA---------TFIQGAVPQILEKTEEE  137 (246)
Q Consensus        73 ~~~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~-~~~~-----~~~---------~~~q~~~~~~l~~~~~~  137 (246)
                      ++.|++|. +.++.++||+++++        +.+....... ..+.     ..+         ..++.++...+.   ..
T Consensus       274 ~~~s~~K~-l~~~~~~g~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~---~~  341 (497)
T 3mc6_A          274 ISCDTHKY-GFAPKGSSVIMYRN--------SDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMG---EN  341 (497)
T ss_dssp             EEEETTTT-TCCCSSCEEEECSS--------HHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHH---HH
T ss_pred             EEECchhh-cCCCCCceeEEecC--------HHHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHh---HH
Confidence            78889998 56778899999988        5554432211 1110     001         222444444433   44


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhc-CCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCe
Q 042445          138 FFSKIIDILRETADKCCDRLKE-IPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDW  216 (246)
Q Consensus       138 ~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~  216 (246)
                      .+++..+...++++.+.+.|++ ++++..+..|.++++.| ..+..       +...+.+.|.++||.+.++..   ++.
T Consensus       342 ~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~~~~~v~~-~~~~~-------~~~~l~~~L~~~Gi~v~~~~~---~~~  410 (497)
T 3mc6_A          342 GYIESCQEIVGAAMKFKKYIQENIPDLDIMGNPRYSVISF-SSKTL-------NIHELSDRLSKKGWHFNALQK---PVA  410 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCCCSSEEEE-ECTTT-------THHHHHHHHHTTTCBCEECCS---SCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCeeEEEE-eCCCC-------CHHHHHHHHHhCCEEEecCCC---CCe
Confidence            5677888888999999999998 78887544555555444 33321       344556667788998876543   457


Q ss_pred             EEEEeec-ChHHHHHHHHHHHHHHHHHh
Q 042445          217 LRITFAV-EPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       217 iRls~~~-~~~~l~~~~~~l~~~~~~~~  243 (246)
                      +|+++.. +.++++++++.|.+++++..
T Consensus       411 ~ri~~~~~t~e~i~~~~~~L~~~l~~~~  438 (497)
T 3mc6_A          411 LHMAFTRLSAHVVDEICDILRTTVQELK  438 (497)
T ss_dssp             EEEECCTTTTCTHHHHHHHHHHHHHHHT
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHHHH
Confidence            8999885 88899999999999988765

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=99.81  E-value=2.1e-19  Score=153.76  Aligned_cols=214  Identities=12%  Similarity=0.014  Sum_probs=140.3

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcC----------CEEEEccccCCcccCCCCCccccccCC
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLG----------IMVIANEVYGHLAFGNTPFVSMGVFGS   67 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~----------~~ii~De~y~~~~~~~~~~~~~~~~~~   67 (246)
                      +.+++.++++    ++++||||||.+++   +++|.++|+++|          +++|+||+|..+..    ...+...+.
T Consensus       166 ~~l~~~i~~~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~----~~~~~~~~~  238 (432)
T 3a9z_A          166 EDILAAVRPTTCLVTIMLANNETGVIMP---ISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKR----RVDVEDLGV  238 (432)
T ss_dssp             HHHHHTCCTTEEEEECCSBCTTTCBBCC---HHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTS----CCCHHHHCC
T ss_pred             HHHHHhccCCceEEEEECcccCcccccC---HHHHHHHHHhcCcccccccCCceEEEEEchhhhCCc----ccChhhcCC
Confidence            3455555543    88999999999999   567888899999          99999999976431    112222221


Q ss_pred             cccEEEEcccccccccCCceEEEEEeeCCCCCcchhhH-HHHHHH--------HhhhcCCCCchHHHHHHHHHhhchHHH
Q 042445           68 IVPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQDSGI-VDSIKI--------FLNISSDPATFIQGAVPQILEKTEEEF  138 (246)
Q Consensus        68 ~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~-~~~l~~--------~~~~~~~~~~~~q~~~~~~l~~~~~~~  138 (246)
                        + +++.|++|.+|   .|+||+++++        ++ ...+..        .....++.++..+.++.+++... ..+
T Consensus       239 --d-~~~~s~~K~~g---~~~G~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~-~~~  303 (432)
T 3a9z_A          239 --D-FLTIVGHKFYG---PRIGALYVRG--------VGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLV-SEN  303 (432)
T ss_dssp             --S-EEEEEGGGTTC---CSCEEEEETT--------BTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHH-HHH
T ss_pred             --C-EEEEehhHhcC---CcceEEEEcc--------ccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHH-Hhh
Confidence              2 56889999863   5699999987        32 111211        01112256788888887777742 346


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCccc-cCC-----CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcC
Q 042445          139 FSKIIDILRETADKCCDRLKEIPCITCP-KKP-----EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG  212 (246)
Q Consensus       139 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~  212 (246)
                      +++.++.++++++.+.+.|++++++... ..|     ..+..+++.++...   . +..++ ...+  .++.+.+|..|.
T Consensus       304 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~-~~~l--~~i~~~~G~~~~  376 (432)
T 3a9z_A          304 CETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQ---L-RGYMV-LAQC--QTLLASVGASCH  376 (432)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECSTT---C-CHHHH-HHHC--SSEECBSSCGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCCC---C-cHHHH-HHHh--cCeEEecccccc
Confidence            7888999999999999999885444311 122     22334555565311   0 23333 2223  367777665432


Q ss_pred             ---------------C-----CCeEEEEeec--ChHHHHHHHHHHHHHHHHHhh
Q 042445          213 ---------------L-----KDWLRITFAV--EPSALENGLGRMKAFYDRHAE  244 (246)
Q Consensus       213 ---------------~-----~~~iRls~~~--~~~~l~~~~~~l~~~~~~~~~  244 (246)
                                     .     .+++|++++.  +++++++++++|++++++..+
T Consensus       377 ~~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~~~~  430 (432)
T 3a9z_A          377 SDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQLEG  430 (432)
T ss_dssp             GGGTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence                           1     3799999996  899999999999999887653

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=99.80  E-value=1.6e-18  Score=147.05  Aligned_cols=209  Identities=13%  Similarity=0.096  Sum_probs=138.6

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.++++    ++.+|+||||.+++   +++|.++|++||+++|+||+|....+..    +.. +   +..+++.|+
T Consensus       143 ~~l~~~i~~~~~~v~~e~~~np~G~~~~---l~~i~~la~~~g~~livDe~~~~~~~~~----~~~-~---g~div~~S~  211 (400)
T 3nmy_A          143 AAFKAAIRADTKMVWIETPTNPMLKLVD---IAAIAVIARKHGLLTVVDNTFASPMLQR----PLS-L---GADLVVHSA  211 (400)
T ss_dssp             HHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHCC----GGG-G---TCSEEEEET
T ss_pred             HHHHHHhccCCCEEEEECCCCCCCeeec---HHHHHHHHHHcCCEEEEECCCcccccCC----hhh-c---CCcEEEecC
Confidence            4556666554    78899999999997   9999999999999999999998544321    111 1   244899999


Q ss_pred             ccccccCCceEEE--EEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 042445           78 SKRGIVPGLRLGW--LVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCC  154 (246)
Q Consensus        78 sK~~~~~g~r~G~--i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~  154 (246)
                      ||.++++|.++|+  +++.+.       ++.+.++.... .+...++...+++.+.++.     +..+.+...++++.+.
T Consensus       212 sK~l~g~g~~~gG~~vv~~~~-------~~~~~l~~~~~~~g~~~~~~~a~~~l~~l~~-----l~~r~~~~~~~a~~l~  279 (400)
T 3nmy_A          212 TKYLNGHSDMVGGIAVVGDNA-------ELAEQMAFLQNSIGGVQGPFDSFLALRGLKT-----LPLRMRAHCENALALA  279 (400)
T ss_dssp             TTTTTCSSSCCCEEEEECSCH-------HHHHHHHHHHHHHCCBCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHH
T ss_pred             ccccCCCCCcceeEEEEeCCH-------HHHHHHHHHHHhcCCCCCHHHHHHHHHhHhH-----HHHHHHHHHHHHHHHH
Confidence            9999999888766  444442       77787776633 4546788877777776663     5556667788899999


Q ss_pred             HHhhcCCCCccccCC----------------CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcC------
Q 042445          155 DRLKEIPCITCPKKP----------------EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG------  212 (246)
Q Consensus       155 ~~L~~~~~~~~~~~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~------  212 (246)
                      +.|++.|.+..+..|                ..|..++++++...     +....+.+.++-.++.+..|..+.      
T Consensus       280 ~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~~-----~~~~~~~~~l~~~~~~~s~G~~~sl~~~p~  354 (400)
T 3nmy_A          280 QWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGF-----DAAKRFCEKTELFTLAESLGGVESLVNHPA  354 (400)
T ss_dssp             HHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHH-----HHHHHHHHHCSSSEECSCCCSSSCEEECTT
T ss_pred             HHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCcH-----HHHHHHHHcCCcceEecCCCCCcceeeCcc
Confidence            999887766544333                24677888886321     122233333433344444443321      


Q ss_pred             -----------------CCCeEEEEeecChHHHHHHHHHHHHHHH
Q 042445          213 -----------------LKDWLRITFAVEPSALENGLGRMKAFYD  240 (246)
Q Consensus       213 -----------------~~~~iRls~~~~~~~l~~~~~~l~~~~~  240 (246)
                                       .++.+|+|++.++  .+..++.|.++++
T Consensus       355 ~~~~~~~~~~~~~~~gi~~~liRlsvGle~--~~dli~dl~~al~  397 (400)
T 3nmy_A          355 VMTHASIPVARREQLGISDALVRLSVGIED--LGDLRGDLERALV  397 (400)
T ss_dssp             TTTTTTSCHHHHHHHTCCTTEEEEECCSSC--HHHHHHHHHHHHC
T ss_pred             ccccccCCHHHHHhcCCCcCeEEEEeCcCC--HHHHHHHHHHHHh
Confidence                             1578999999732  2334555666664

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=99.80  E-value=3.2e-18  Score=145.87  Aligned_cols=139  Identities=10%  Similarity=0.033  Sum_probs=99.3

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHH--cCCEEEEccccCCcccCCCCCccccccCCcccEEEEc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKK--LGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLG   75 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~--~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~   75 (246)
                      |.+++.++++    ++.+|+||||.+.+   +++|.++|++  +|+++|+|++|+.+...    .++ .+   +..+++.
T Consensus       158 ~~le~ai~~~tklV~~e~~~NptG~v~d---l~~I~~la~~~~~g~~livD~a~a~~~~~----~p~-~~---g~Div~~  226 (415)
T 2fq6_A          158 ADIVKHLQPNTKIVFLESPGSITMEVHD---VPAIVAAVRSVVPDAIIMIDNTWAAGVLF----KAL-DF---GIDVSIQ  226 (415)
T ss_dssp             GGGGGGCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHCTTCEEEEECTTTTTTSS----CGG-GG---TCSEEEE
T ss_pred             HHHHHhhccCCcEEEEECCCCCCCEeec---HHHHHHHHHhhcCCCEEEEECCCcccccC----Ccc-cc---CCeEEEE
Confidence            5667777654    77899999999997   8899999999  99999999999865322    122 12   2348899


Q ss_pred             ccccccccCCce-EEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 042445           76 SISKRGIVPGLR-LGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKC  153 (246)
Q Consensus        76 s~sK~~~~~g~r-~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l  153 (246)
                      |++|.++++|.+ .||+++++        ++++.++.... .+...++....++...++     .+....+...++.+.+
T Consensus       227 S~sK~lg~~g~~~~G~l~~~~--------~~~~~l~~~~~~~G~~~~~~~a~~~~~~l~-----~l~~r~~~~~~n~~~l  293 (415)
T 2fq6_A          227 AATKYLVGHSDAMIGTAVCNA--------RCWEQLRENAYLMGQMVDADTAYITSRGLR-----TLGVRLRQHHESSLKV  293 (415)
T ss_dssp             ETTTTTTCSSSCCCEEEEECT--------TTHHHHHHHHHHTTCCCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
T ss_pred             eCccccCCCCCceEEEEEeCH--------HHHHHHHHHHHhcCCCCCHHHHHHHHhhhh-----HHHHHHHHHHHHHHHH
Confidence            999999998865 59999887        66777766543 333445554444444443     3555666677888888


Q ss_pred             HHHhhcCCCCc
Q 042445          154 CDRLKEIPCIT  164 (246)
Q Consensus       154 ~~~L~~~~~~~  164 (246)
                      .+.|++.|.+.
T Consensus       294 ~~~L~~~~~v~  304 (415)
T 2fq6_A          294 AEWLAEHPQVA  304 (415)
T ss_dssp             HHHHHTCTTEE
T ss_pred             HHHHHcCCCee
Confidence            88888765443

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=99.80  E-value=2e-18  Score=147.65  Aligned_cols=213  Identities=10%  Similarity=-0.002  Sum_probs=134.6

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.++++    ++++|+||||.+.+   +++|.++|+++|+++|+|++|+...+..    +. ..   +..+++.|+
T Consensus       158 ~~l~~ai~~~t~~v~~e~p~NptG~~~d---l~~i~~la~~~g~~livD~a~~~~~~~~----~~-~~---g~div~~S~  226 (430)
T 3ri6_A          158 LAVEHACDETTKLLFLETISNPQLQVAD---LEALSKVVHAKGIPLVVDTTMTPPYLLE----AK-RL---GVDIEVLSS  226 (430)
T ss_dssp             HHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTSCTTTCC----GG-GG---TCSEEEEEC
T ss_pred             HHHHHhhCCCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcccccCC----hH-Hc---CCEEEEECC
Confidence            4566666554    88899999999987   7889999999999999999998554311    11 11   234899999


Q ss_pred             ccccccCCceEEEEEeeCCC-CC-----cc-------hhhHHHHHHHH--hhhcCCCCchHHHHHHHHHhhchHHHHHHH
Q 042445           78 SKRGIVPGLRLGWLVTSDPN-GI-----LQ-------DSGIVDSIKIF--LNISSDPATFIQGAVPQILEKTEEEFFSKI  142 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~-~~-----~~-------~~~~~~~l~~~--~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~  142 (246)
                      ||.++++|..+|.+++.+.. ..     +.       ...++..++..  ...+..+++.....+.+.++     .+..+
T Consensus       227 sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~~g~~~~~~~a~l~l~~l~-----~l~~r  301 (430)
T 3ri6_A          227 TKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNLGPSLSPHNAYLQSLGLE-----TMALR  301 (430)
T ss_dssp             CCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHH-----HHHHH
T ss_pred             cccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHHhhhh-----hHHHH
Confidence            99999887666666653211 11     00       00123333322  22333455555444433333     35566


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCccccCCC----------------CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEe
Q 042445          143 IDILRETADKCCDRLKEIPCITCPKKPE----------------GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVL  206 (246)
Q Consensus       143 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~  206 (246)
                      .++..++++.+.+.|++.|++..+..|.                ||+.+|++++...      +...+.+.++-.++.+.
T Consensus       302 ~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~~~~------~~~~~~~~l~~~~~~~s  375 (430)
T 3ri6_A          302 IERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELESKE------ASYRFMDALKLIRRATN  375 (430)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSHH------HHHHHHHHCSSSEECSC
T ss_pred             HHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCHH------HHHHHHHhCCcceecCC
Confidence            6677899999999999888877555554                5658888887321      33344445555566666


Q ss_pred             cCCCcC-----------------------CCCeEEEEeec-ChHHHHHHHHHHHHHH
Q 042445          207 PGITVG-----------------------LKDWLRITFAV-EPSALENGLGRMKAFY  239 (246)
Q Consensus       207 pg~~f~-----------------------~~~~iRls~~~-~~~~l~~~~~~l~~~~  239 (246)
                      +|..+.                       .++.||+|++. +.++   .++.|++++
T Consensus       376 ~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG~E~~~d---l~~dl~~al  429 (430)
T 3ri6_A          376 IHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVGIEEIED---LKEDILQAL  429 (430)
T ss_dssp             CSCSSCEEECTGGGC---------CGGGSCTTEEEEECCSSCHHH---HHHHHHHHH
T ss_pred             CCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHH---HHHHHHHhh
Confidence            776543                       15899999997 4444   444444443

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=99.79  E-value=3.8e-18  Score=143.77  Aligned_cols=206  Identities=11%  Similarity=0.075  Sum_probs=144.8

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      ++++++||||.+++.+++++|.++|++||+++|+|++++ .   +.++ .+..+   +..+++.|++|.++++ ..+|++
T Consensus       140 ~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~-g---~~~~-~~~~~---~~d~~~~s~~K~l~~~-~g~g~~  210 (379)
T 3ke3_A          140 YAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS-G---CVWL-DMKEL---GIDVLISAPQKGWSST-PCAGLV  210 (379)
T ss_dssp             EEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC-T---TCCC-CHHHH---TCSEEEECTTTTTCSC-CCEEEE
T ss_pred             EEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc-C---Cccc-ccccc---CCCEEEecchhhcCCC-CceEEE
Confidence            667778999999999999999999999999999999976 2   2121 22212   2337888999987553 358999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHh--h---------------------hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHH
Q 042445           92 VTSDPNGILQDSGIVDSIKIFL--N---------------------ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRE  148 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~--~---------------------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~  148 (246)
                      ++++        ++++.+....  .                     +.++.++..++++.+++....+..+++.++++++
T Consensus       211 ~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~  282 (379)
T 3ke3_A          211 MLSA--------AAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQWE  282 (379)
T ss_dssp             EECH--------HHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             EECH--------HHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHH
Confidence            9988        7777765410  0                     1125566777777777764333336788888899


Q ss_pred             HHHHHHHHhhcCCCCccccCCC--CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC-----CCeEEEEe
Q 042445          149 TADKCCDRLKEIPCITCPKKPE--GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-----KDWLRITF  221 (246)
Q Consensus       149 ~~~~l~~~L~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-----~~~iRls~  221 (246)
                      +++.+.+.|+++ |+..+..+.  .+....+.++..       +... ...|.++||.+.+|..|..     .+.+|+|+
T Consensus       283 l~~~l~~~l~~~-g~~~~~~~~~~~~~i~~~~~~~~-------~~~~-~~~L~~~Gi~v~~g~~~~~~~~~~~~~lRis~  353 (379)
T 3ke3_A          283 LGNRVRKVLTDK-GIESVAAEGFEAPGVVVSYTERD-------DMHK-GSAFAEAGLQIAAGVPLKVGEPDNFKTFRLGL  353 (379)
T ss_dssp             HHHHHHHHHHHT-TCCBSBCTTCBCSSEEEEECSCH-------HHHS-SHHHHHTTCCCEECCCCSSCCCTTCCEEEEEC
T ss_pred             HHHHHHHHHHHc-CCEecCCccccCceEEEEccCCc-------chHH-HHHHHHCCeEEeCCccccccccCcCCEEEEeC
Confidence            999999999887 665433321  222222222211       2222 4567789999999886543     68999999


Q ss_pred             ec--ChHHHHHHHHHHHHHHHHHh
Q 042445          222 AV--EPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       222 ~~--~~~~l~~~~~~l~~~~~~~~  243 (246)
                      ..  ++++++++++.|+++++++.
T Consensus       354 ~~~~t~~di~~~~~~l~~~l~~~~  377 (379)
T 3ke3_A          354 FGLDKLTDIDGTVERFEKALDEVL  377 (379)
T ss_dssp             CSHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             CcCCCHHHHHHHHHHHHHHHHHhc
Confidence            84  88899999999999998765

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=99.79  E-value=4.4e-19  Score=153.38  Aligned_cols=200  Identities=11%  Similarity=0.032  Sum_probs=138.7

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccc-cCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGI-VPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~g~r~G~   90 (246)
                      ++++||||||.+++   +++|.++|++||+++|+|++|+.....    ..+..   .+..+++.|++|.++ +|+ ++|+
T Consensus       219 ~~~~~~n~tG~~~~---l~~i~~la~~~g~~vi~D~a~~~g~~~----~~~~~---~~~D~~~~s~~K~l~~gp~-~~g~  287 (465)
T 3e9k_A          219 LFSGVHFYTGQHFN---IPAITKAGQAKGCYVGFDLAHAVGNVE----LYLHD---WGVDFACWCSYKYLNAGAG-GIAG  287 (465)
T ss_dssp             EEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTTTTSC----CCHHH---HTCCEEEECSSSTTCCCTT-CCCE
T ss_pred             EEeCcccCcceeec---HHHHHHHHHHcCCEEEEEhhhhcCCcC----Cchhh---cCCCEEEECcccccccCCC-ceEE
Confidence            88999999999988   788999999999999999998853321    11111   223488899999984 444 7899


Q ss_pred             EEeeCCCCCcchhhHHHHHHHHh-------------------------hh-cCCCCchHHHHHHHHHhhchHHHHHHHHH
Q 042445           91 LVTSDPNGILQDSGIVDSIKIFL-------------------------NI-SSDPATFIQGAVPQILEKTEEEFFSKIID  144 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~~-------------------------~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~  144 (246)
                      +++++        ++.+.+....                         .+ .++++.+...++.+++....+..+++.++
T Consensus       288 l~~~~--------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~~  359 (465)
T 3e9k_A          288 AFIHE--------KHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRK  359 (465)
T ss_dssp             EEECG--------GGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             EEEcH--------HHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHHH
Confidence            99877        4443332110                         00 11456666666666666432334788999


Q ss_pred             HHHHHHHHHHHHhhcC----------CCCccccCCC----CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCC
Q 042445          145 ILRETADKCCDRLKEI----------PCITCPKKPE----GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGIT  210 (246)
Q Consensus       145 ~~~~~~~~l~~~L~~~----------~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~  210 (246)
                      ..+++++.+.+.|+++          +++.. ..|.    .|.+++++++..       ..+ +.+.|.++||.+..   
T Consensus       360 ~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~-~~p~~~~~~g~~~~~~~~~~-------~~~-l~~~L~~~Gi~v~~---  427 (465)
T 3e9k_A          360 KSVLLTGYLEYLIKHNYGKDKAATKKPVVNI-ITPSHVEERGCQLTITFSVP-------NKD-VFQELEKRGVVCDK---  427 (465)
T ss_dssp             HHHHHHHHHHHHHHHHCC---------CEEE-CSCSSGGGBCSCEEEEECCT-------TCC-HHHHHHTTTEECEE---
T ss_pred             HHHHHHHHHHHHHHhhccccccccCCCCeEE-eCCCCHhhcccEEEEEecCC-------HHH-HHHHHHHCCEEEec---
Confidence            9999999999999874          67763 3443    377778777621       233 44556688999873   


Q ss_pred             cCCCCeEEEEe-e-c-ChHHHHHHHHHHHHHHHHHh
Q 042445          211 VGLKDWLRITF-A-V-EPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       211 f~~~~~iRls~-~-~-~~~~l~~~~~~l~~~~~~~~  243 (246)
                       ..++++|+|+ . . +.++++++++.|++++++..
T Consensus       428 -~~~~~iRis~~~~~~t~edi~~~~~~l~~~l~~~~  462 (465)
T 3e9k_A          428 -RNPNGIRVAPVPLYNSFHDVYKFTNLLTSILDSAE  462 (465)
T ss_dssp             -ETTTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC--
T ss_pred             -CCCCEEEEeCcccCCCHHHHHHHHHHHHHHHHhcc
Confidence             2378999998 3 2 89999999999999987543

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=99.79  E-value=3.3e-18  Score=144.49  Aligned_cols=212  Identities=12%  Similarity=0.134  Sum_probs=137.0

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCc-ccCCCCCccccccCCcccEEEEcc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHL-AFGNTPFVSMGVFGSIVPLLTLGS   76 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~-~~~~~~~~~~~~~~~~~~~i~~~s   76 (246)
                      +.+++.++++    ++   +||||.+.+   +++|.++|+++|+++|+||+|+.+ .+.+.+      ++.  ..+++.|
T Consensus       118 ~~l~~~l~~~~~~v~~---~~~~G~~~~---~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~------~~~--~d~~~~S  183 (393)
T 1mdo_A          118 EHIEAAITPQTKAIIP---VHYAGAPAD---LDAIYALGERYGIPVIEDAAHATGTSYKGRH------IGA--RGTAIFS  183 (393)
T ss_dssp             HHHHHHCCTTEEEECC---BCGGGCCCC---HHHHHHHHHHHTCCBCEECTTCTTCEETTEE------TTS--SSEEEEE
T ss_pred             HHHHHhcCCCceEEEE---eCCCCCcCC---HHHHHHHHHHcCCeEEEECccccCCeECCee------cCC--CCeEEEe
Confidence            3455555443    33   369999865   899999999999999999999964 343221      111  5588999


Q ss_pred             cccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhc-------------------------CCCCchHHHHHHHHH
Q 042445           77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNIS-------------------------SDPATFIQGAVPQIL  131 (246)
Q Consensus        77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~-------------------------~~~~~~~q~~~~~~l  131 (246)
                      ++|..+++|.|+||+++++.       ++++.+......+                         +..+++...++...+
T Consensus       184 ~~k~K~l~~~~~g~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l  256 (393)
T 1mdo_A          184 FHAIKNITCAEGGIVVTDNP-------QFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQL  256 (393)
T ss_dssp             CCTTSSSCSSSCEEEEESCH-------HHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHH
T ss_pred             CCCCCccccccceEEEeCCH-------HHHHHHHHHHhcCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHH
Confidence            99333345568999999742       7888777543211                         113444444333333


Q ss_pred             hhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC-----CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEe
Q 042445          132 EKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKP-----EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVL  206 (246)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~  206 (246)
                      .     .+++..+..+++++.+.+.|++++ +..+..+     .+++++|++++.... +  .+.+.+.+.|.++||.+.
T Consensus       257 ~-----~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~-~--~~~~~l~~~l~~~gi~v~  327 (393)
T 1mdo_A          257 Q-----KLDALNARRAAIAAQYHQAMADLP-FQPLSLPSWEHIHAWHLFIIRVDEARC-G--ITRDALMASLKTKGIGTG  327 (393)
T ss_dssp             H-----THHHHHHHHHHHHHHHHHHHHTSS-CEECCCCSSCEECCCSCEEEECCHHHH-S--SCHHHHHHHHHHTTBCCB
T ss_pred             H-----HHHHHHHHHHHHHHHHHHHHhcCC-cccccCCCCCCCceeEEEEEEeccccc-c--cCHHHHHHHHHhCCCCcc
Confidence            3     245555666678888888998875 5432223     456788988863100 0  134445566778999999


Q ss_pred             cCCCc--------------CC-------CCeEEEEeec--ChHHHHHHHHHHHHHHHHHh
Q 042445          207 PGITV--------------GL-------KDWLRITFAV--EPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       207 pg~~f--------------~~-------~~~iRls~~~--~~~~l~~~~~~l~~~~~~~~  243 (246)
                      +|..+              ..       .+.+|+++..  ++++++++++.|+++++...
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~~  387 (393)
T 1mdo_A          328 LHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIAGQGS  387 (393)
T ss_dssp             CCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHHC---
T ss_pred             cccCccccChhhhccCCccCChhHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHhcCC
Confidence            98754              11       3479999984  89999999999999886654

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=99.78  E-value=4.4e-19  Score=153.71  Aligned_cols=200  Identities=10%  Similarity=0.062  Sum_probs=130.1

Q ss_pred             cccCCcCCCcc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      +++..+|++|. +++++++++|.++|++||+++|+||+|.++.+.+.. .....++-. ..+.+.||||.+ ++|   ||
T Consensus       263 ive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~-~~~~~~gv~-~~~Di~t~sK~~-l~G---G~  336 (472)
T 1ohv_A          263 IVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKF-WAHEHWGLD-DPADVMTFSKKM-MTG---GF  336 (472)
T ss_dssp             EECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSS-SGGGGGCCS-SCCSEEEECGGG-SSE---EE
T ss_pred             EEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCCCc-hhccccCCC-CCCCEEEEcccc-ccC---Cc
Confidence            33333578996 578999999999999999999999999987665532 222222211 012245899995 445   77


Q ss_pred             EEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcC----CC-Cc
Q 042445           91 LVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEI----PC-IT  164 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~-~~  164 (246)
                      ++ ++        ++. .+... ...+++.|++++.++.++|+...+   +...+.++++++.+.+.|+++    ++ +.
T Consensus       337 ~~-~~--------~~~-~~~~~~~~~T~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~  403 (472)
T 1ohv_A          337 FH-KE--------EFR-PNAPYRIFNTWLGDPSKNLLLAEVINIIKR---EDLLSNAAHAGKVLLTGLLDLQARYPQFIS  403 (472)
T ss_dssp             EE-CG--------GGS-CSSSSSSCCSSSSCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHHHCTTTCE
T ss_pred             cC-ch--------hhc-ccccccccCccCccHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHhhCCCcEE
Confidence            76 44        431 11111 223446799999999888873222   234566667777777766553    32 32


Q ss_pred             cccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHH
Q 042445          165 CPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       165 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~  242 (246)
                       ...+. |.+++++++...     +..+++. .|.++||.+.|+.    .++||++++.  +++++++++++|.++++++
T Consensus       404 -~~~~~-g~~~~~~~~~~~-----~~~~~~~-~l~~~Gv~~~~~g----~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~  471 (472)
T 1ohv_A          404 -RVRGR-GTFCSFDTPDES-----IRNKLIS-IARNKGVMLGGCG----DKSIRFRPTLVFRDHHAHLFLNIFSDILADF  471 (472)
T ss_dssp             -EEEEE-TTEEEEECSSHH-----HHHHHHH-HHHHTTEECEEET----TTEEEECCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred             -eecCC-ceEEEEEeCChh-----HHHHHHH-HHHHCCeEEecCC----CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence             13444 556666665321     1334444 4557899999853    6799998773  8999999999999998753

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=99.66  E-value=9.7e-21  Score=163.06  Aligned_cols=217  Identities=10%  Similarity=0.043  Sum_probs=142.8

Q ss_pred             hhhhhhhc---cc---cccCC-cCCCcc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEE
Q 042445            2 ELINQDIT---RE---FSDFQ-VFHVGS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLT   73 (246)
Q Consensus         2 e~~~~~~~---~~---~~~~p-~NPtG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~   73 (246)
                      +.+++.++   .+   ++..| +|++|. +.+.+++++|.++|++||+++|+||+|. +.. +. ......+   +....
T Consensus       221 ~~l~~~l~~~~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~-g~-~~a~~~~---gv~pD  294 (465)
T 2yky_A          221 EGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRL-SG-GGAQEML---GISAD  294 (465)
Confidence            44555555   22   44455 456995 4568899999999999999999999999 633 22 1122222   22234


Q ss_pred             EcccccccccCCceEEEEEeeCCCCCcchhhHHHHHHH------HhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHH
Q 042445           74 LGSISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKI------FLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILR  147 (246)
Q Consensus        74 ~~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~  147 (246)
                      +.||||.+++ |+|+||+++++        ++++.+..      ....+++.|+++++++.+.|+...+   +...+.++
T Consensus       295 i~t~sK~lg~-G~piG~v~~~~--------~i~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l~~---~~~~~~~~  362 (465)
T 2yky_A          295 LTTLGKYIGG-GMSFGAFGGRR--------DLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIYT---RQAASDLS  362 (465)
Confidence            5689999876 99999999998        88887765      2334558899999999888874322   23455555


Q ss_pred             HHHHHHHHHhhcCC---CCccccCCCCceEEEEEeccccccCC-------CChHHHHHHHHHhcCeEEecCCCcCCCCeE
Q 042445          148 ETADKCCDRLKEIP---CITCPKKPEGSMFVMVKLNYSLLEGI-------NSDMEFALKLAKEESVIVLPGITVGLKDWL  217 (246)
Q Consensus       148 ~~~~~l~~~L~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~-------~~~~~~~~~ll~~~gi~v~pg~~f~~~~~i  217 (246)
                      ++.+.+.+.|+++.   ++. ...+..|.++++.+......+.       ......+...+.++||.+.|+. |.  .  
T Consensus       363 ~~~~~l~~~L~~~~~~~~~~-~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~~GV~v~p~~-~~--~--  436 (465)
T 2yky_A          363 ASGDRFRANLNRIAVENQAP-LQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLRKGIYLAPRG-MY--A--  436 (465)
Confidence            66666666665421   222 2244568888887764110000       0012334445668999999976 22  1  


Q ss_pred             EEEeecChHHHHHHHHHHHHHHHHHh
Q 042445          218 RITFAVEPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       218 Rls~~~~~~~l~~~~~~l~~~~~~~~  243 (246)
                       +++..+++++++++++|.+++++.+
T Consensus       437 -~s~~~t~edid~~l~~l~~~l~~~~  461 (465)
T 2yky_A          437 -LSLEIADAGRDAFAEALADFIGEQR  461 (465)
Confidence             6766799999999999999987764

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=99.78  E-value=4.4e-18  Score=142.78  Aligned_cols=212  Identities=15%  Similarity=0.167  Sum_probs=133.8

Q ss_pred             hhhhhhhccc--cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCccc-CCCCCccccccCCcccEEEEcccc
Q 042445            2 ELINQDITRE--FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAF-GNTPFVSMGVFGSIVPLLTLGSIS   78 (246)
Q Consensus         2 e~~~~~~~~~--~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~-~~~~~~~~~~~~~~~~~i~~~s~s   78 (246)
                      +.+++.++++  .+. |+||||.+.+   +++|.++|+++|+++|+||+|+.+.. .+...   ..+    ..+++.|++
T Consensus       116 ~~l~~~~~~~~~~v~-~~n~~G~~~~---~~~i~~~~~~~~~~li~D~~~~~g~~~~~~~~---~~~----~d~~~~s~~  184 (374)
T 3uwc_A          116 EKIEAAITDKTKAIM-PVHYTGNIAD---MPALAKIAKKHNLHIVEDACQTILGRINDKFV---GSW----GQFACFSLH  184 (374)
T ss_dssp             GGTGGGCCTTEEEEC-CBCGGGCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEETTEET---TSS----SSEEEEECS
T ss_pred             HHHHHhCCCCceEEE-EeCCcCCcCC---HHHHHHHHHHcCCEEEEeCCCccCceeCCeec---ccc----ccEEEEeCC
Confidence            4555656554  222 8899999876   88999999999999999999996542 22111   111    136677766


Q ss_pred             --cccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhh-------------cCCCCchHHHHHHHHHhhchHHHHHHHH
Q 042445           79 --KRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNI-------------SSDPATFIQGAVPQILEKTEEEFFSKII  143 (246)
Q Consensus        79 --K~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~~~q~~~~~~l~~~~~~~~~~~~  143 (246)
                        |.++++|. .|++++++.       ++.+.+......             ....+++...+....+     ..+++..
T Consensus       185 ~~K~l~~~g~-~g~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~-----~~~~~~~  251 (374)
T 3uwc_A          185 PLKNLNVWSD-AGVIITHSD-------EYAEKLRLYRNHGLINRDVCVEYGINCRMDTIQAVIANRLM-----NQLETIT  251 (374)
T ss_dssp             SSSSSCCSSC-CEEEEESCH-------HHHHHHHHHTBTTEEETTEESSCCCBCBCCHHHHHHHHHHG-----GGHHHHH
T ss_pred             CCCcCCccce-eEEEEeCCH-------HHHHHHHHHHhcCccccCccccccccCCCCHHHHHHHHHHH-----HHHHHHH
Confidence              99877565 888888763       566666654321             1112333333322222     2355566


Q ss_pred             HHHHHHHHHHHHHhhcCCC-CccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC---------
Q 042445          144 DILRETADKCCDRLKEIPC-ITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---------  213 (246)
Q Consensus       144 ~~~~~~~~~l~~~L~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---------  213 (246)
                      ++.+++.+.+.+.|+++++ +.....+.++...|..+....     .+.+.+.+.|.++||.+.++.....         
T Consensus       252 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~~  326 (374)
T 3uwc_A          252 EKRRGIAHLYDQSFVDLSEFIDVPVRREGVYHVFHIYVLRV-----KYRDQLFQYLKDNGIEVKIHYPIAMHLQPAAKSL  326 (374)
T ss_dssp             HHHHHHHHHHHHHTGGGTTTEECCCCCTTEECCCSSEEEEE-----TTHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGG
T ss_pred             HHHHHHHHHHHHHhccCCCeEEeccCCCCCceeeEEEEEEc-----CCHHHHHHHHHHCCCccccCCCCccccChhhhhc
Confidence            6777888888899988876 653333343333321111110     1344556677888999998751100         


Q ss_pred             --------------CCeEEEEeec--ChHHHHHHHHHHHHHHHHH
Q 042445          214 --------------KDWLRITFAV--EPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       214 --------------~~~iRls~~~--~~~~l~~~~~~l~~~~~~~  242 (246)
                                    .+.+|+++..  ++++++++++.|.+++++.
T Consensus       327 ~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l~~~  371 (374)
T 3uwc_A          327 GYQQGDFPMAEKHGEAVITLPAHPYLTEEEINYIIKKVREFYLEK  371 (374)
T ss_dssp             CCCTTSCHHHHHHHHHEEEECCCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred             CCccCCCccHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHhh
Confidence                          2789999884  8999999999999998754

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=99.77  E-value=3.3e-17  Score=139.99  Aligned_cols=217  Identities=17%  Similarity=0.230  Sum_probs=136.7

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccC-CcccCCCCCccccccCCcccEEEEcc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYG-HLAFGNTPFVSMGVFGSIVPLLTLGS   76 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~i~~~s   76 (246)
                      +.+++.++++    ++   +||||..   .++++|.++|+++|+++|+||+|+ ++.+++.   ++..+.   + +++.|
T Consensus       129 ~~l~~~i~~~~~~v~~---~~~tG~~---~~l~~i~~la~~~~~~li~Dea~~~g~~~~~~---~~~~~~---d-i~~~S  195 (424)
T 2po3_A          129 DQVAAAVTPRTSAVVG---VHLWGRP---CAADQLRKVADEHGLRLYFDAAHALGCAVDGR---PAGSLG---D-AEVFS  195 (424)
T ss_dssp             HHHGGGCCTTEEEEEE---ECGGGCC---CCHHHHHHHHHHTTCEEEEECTTCTTCEETTE---ETTSSS---S-EEEEE
T ss_pred             HHHHHhhCcCCcEEEE---ECCCCCc---CCHHHHHHHHHHcCCEEEEECccccCCeECCe---eccccc---C-EEEEe
Confidence            3455555443    33   3699986   469999999999999999999999 5666542   222221   2 88999


Q ss_pred             cccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcC-C--------C-CchHHHHHHHHHhhchHHHHHHHHHHH
Q 042445           77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISS-D--------P-ATFIQGAVPQILEKTEEEFFSKIIDIL  146 (246)
Q Consensus        77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~-~--------~-~~~~q~~~~~~l~~~~~~~~~~~~~~~  146 (246)
                      |||..+++|.|+||+++++.       ++++.+........ .        . ..+.+.++...+.  ....+++..++.
T Consensus       196 ~sk~K~l~~~~~G~~v~~~~-------~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~--~~~~~~~~~~~~  266 (424)
T 2po3_A          196 FHATKAVNAFEGGAVVTDDA-------DLAARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLT--SLDAFPEVIDRN  266 (424)
T ss_dssp             CCTTSSSCCSSCEEEEESCH-------HHHHHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHH--HHHHHHHHHHHH
T ss_pred             CCCCCCccCCCCeEEEeCCH-------HHHHHHHHHHhcCccccccccccCcCCCcCHHHHHHHHH--HHHHHHHHHHHH
Confidence            99666677789999999832       78888876543210 0        0 0223333333333  234466677777


Q ss_pred             HHHHHHHHHHhhcCCCCccccCCCCc----eEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcC----------
Q 042445          147 RETADKCCDRLKEIPCITCPKKPEGS----MFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG----------  212 (246)
Q Consensus       147 ~~~~~~l~~~L~~~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~----------  212 (246)
                      +++++.+.+.|++++++..+..|+++    +++++.++.... +.  +.+.+.+.|.++||.+.+.....          
T Consensus       267 ~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~-~~--~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~  343 (424)
T 2po3_A          267 RRNHAAYREHLADLPGVLVADHDRHGLNNHQYVIVEIDEATT-GI--HRDLVMEVLKAEGVHTRAYFSPGCHELEPYRGQ  343 (424)
T ss_dssp             HHHHHHHHHHTCSCTTEEECCGGGGSCCCCCCEEEEECHHHH-SS--CHHHHHHHHHHTTEECBCTTCSCGGGSTTTTTS
T ss_pred             HHHHHHHHHHhccCCCccccCCCCCCccccEEEEEEECCccc-hh--hHHHHHHHHHHCCCceecccCCccccchhhhhc
Confidence            78888888899887777643224443    333366653100 01  34445667888999998732100          


Q ss_pred             ----CCCe-------EEEEee--cChHHHHHHHHHHHHHHHHHh
Q 042445          213 ----LKDW-------LRITFA--VEPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       213 ----~~~~-------iRls~~--~~~~~l~~~~~~l~~~~~~~~  243 (246)
                          .++.       +|+++.  .++++++++++.|.+++++..
T Consensus       344 g~~~~~~~~r~~~~~l~l~~~~~~t~e~i~~~~~~L~~~~~~~~  387 (424)
T 2po3_A          344 PHAPLPHTERLAARVLSLPTGTAIGDDDIRRVADLLRLCATRGR  387 (424)
T ss_dssp             CCCCCHHHHHHHTTEEEECCSTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCChhHHHHhcCEEEeeCCCCCCHHHHHHHHHHHHHHHhhhH
Confidence                0122       666633  389999999999999886643

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=99.76  E-value=5.3e-17  Score=138.39  Aligned_cols=222  Identities=20%  Similarity=0.177  Sum_probs=135.8

Q ss_pred             hhhhhhhccc-cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcc-cCCCCCccccccCCcccEEEEccc--
Q 042445            2 ELINQDITRE-FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLA-FGNTPFVSMGVFGSIVPLLTLGSI--   77 (246)
Q Consensus         2 e~~~~~~~~~-~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~-~~~~~~~~~~~~~~~~~~i~~~s~--   77 (246)
                      +.+++.++++ -...++||||..   .++++|.++|+++|+++|+||+|+.+. +++...   ..+.    .+.+.||  
T Consensus       121 ~~l~~~i~~~~~~v~~~~~~G~~---~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~---~~~~----~~~~~s~s~  190 (418)
T 2c81_A          121 QLIKSAITDKTKAIIPVHLFGSM---ANMDEINEIAQEHNLFVIEDCAQSHGSVWNNQRA---GTIG----DIGAFSCQQ  190 (418)
T ss_dssp             HHHGGGCCTTEEEECCBCCTTCC---CCHHHHHHHHHHTTCEEEEECTTCTTCEETTEET---TSSS----SEEEEECCT
T ss_pred             HHHHHhhCCCCeEEEEeCCcCCc---ccHHHHHHHHHHCCCEEEEECcccccCccCCEec---cccc----ceEEEeccC
Confidence            3455555544 111235799986   458999999999999999999999886 543221   1121    1677777  


Q ss_pred             ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCC-----------CC-------chH----HHHHHHHHhhch
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSD-----------PA-------TFI----QGAVPQILEKTE  135 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~-----------~~-------~~~----q~~~~~~l~~~~  135 (246)
                      ||.+++ | |.||+++++.       ++++.+......+..           ..       .++    ...+..++....
T Consensus       191 ~K~~~~-g-~~g~~~~~~~-------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~  261 (418)
T 2c81_A          191 GKVLTA-G-EGGIIVTKNP-------RLFELIQQLRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQ  261 (418)
T ss_dssp             TSSSCS-S-SCEEEEESCH-------HHHHHHHHHHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHH
T ss_pred             CcccCC-C-CeEEEEECCH-------HHHHHHHHHHHhCccccccccccccchhhccccccccCcCCCcCHHHHHHHHHH
Confidence            999877 8 9999999642       777777654322100           00       000    000111111111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC-ceE---EE-EEeccccccCCCChHHHHHHHHHhc-CeE---Ee
Q 042445          136 EEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG-SMF---VM-VKLNYSLLEGINSDMEFALKLAKEE-SVI---VL  206 (246)
Q Consensus       136 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-g~~---~~-~~~~~~~~~~~~~~~~~~~~ll~~~-gi~---v~  206 (246)
                      ...+++..+..+++++.+.+.|++++++.....+.+ +..   ++ +.++.....+. +..++. +.|.++ ||.   +.
T Consensus       262 l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~-~~L~~~~gI~~~~v~  339 (418)
T 2c81_A          262 LQELDDKNAIREKNAMFLNDALSKIDGIKVMKRPPQVSRQTYYGYVFRFDPVKFGGL-NADQFC-EILREKLNMGTFYLH  339 (418)
T ss_dssp             HTTHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCTTEEECCCSEEEEEECGGGTTTC-CHHHHH-HHHHHHHTCCTTTEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCcccccEEEEEEEcccccccc-CHHHHH-HHHHHcCCCCccccc
Confidence            223566667777788889999988888774335555 332   22 56653100011 244454 455566 999   88


Q ss_pred             cCCCcC-----------------------------C-------CCeEEEEee--c-ChHHHHHHHHHHHHHHHHHhh
Q 042445          207 PGITVG-----------------------------L-------KDWLRITFA--V-EPSALENGLGRMKAFYDRHAE  244 (246)
Q Consensus       207 pg~~f~-----------------------------~-------~~~iRls~~--~-~~~~l~~~~~~l~~~~~~~~~  244 (246)
                      ++....                             .       .+.+|+++.  . ++++++.+++.|++++++...
T Consensus       340 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~~~~~  416 (418)
T 2c81_A          340 PPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSERASGQSIVIHHAILLAEPSHLSLLVDAVAELARKFCV  416 (418)
T ss_dssp             CCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHTTC-
T ss_pred             ccccccccCchhcccccccccccccccccccccCCChHHHHHHhCEEEecCCccCCCHHHHHHHHHHHHHHHHhhcc
Confidence            875220                             0       158999997  4 889999999999999876544

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=99.74  E-value=7.5e-17  Score=138.95  Aligned_cols=223  Identities=15%  Similarity=0.020  Sum_probs=140.1

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHc------CCEEEEccccCCccc---CCCCCccccccCCc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKL------GIMVIANEVYGHLAF---GNTPFVSMGVFGSI   68 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~------~~~ii~De~y~~~~~---~~~~~~~~~~~~~~   68 (246)
                      +.+++.+.++    ++++|+||||.+.+   +++|.++|+++      |+++++|++|..+..   .+. . .. .+...
T Consensus       178 ~~l~~~i~~~t~~v~~~~~~n~tG~~~~---l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~-~-~~-~~~~~  251 (452)
T 2dgk_A          178 KRMIEACDENTIGVVPTFGVTYTGNYEF---PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPD-I-VW-DFRLP  251 (452)
T ss_dssp             HHHHHHCCTTEEEEECBBSCTTTCBBCC---HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTT-C-CC-STTST
T ss_pred             HHHHHHHhhCCEEEEEEcCCcCCcccCC---HHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCcc-c-hh-hcCCC
Confidence            4566666544    88999999999965   88888999985      999999999998753   221 1 11 11111


Q ss_pred             ccEEEEcccccccccCCceEEEEEeeCCCCCcchhhHH-HHHHHHhhh----------cCCC---CchHHHHHHHHHhhc
Q 042445           69 VPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQDSGIV-DSIKIFLNI----------SSDP---ATFIQGAVPQILEKT  134 (246)
Q Consensus        69 ~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~-~~l~~~~~~----------~~~~---~~~~q~~~~~~l~~~  134 (246)
                      .-..+..|.+|. ++++.++||+++.+.       +++ +.+.....+          ..+.   ..+.+.++...+   
T Consensus       252 ~~d~~~~~~hK~-~~~~~~~G~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~l---  320 (452)
T 2dgk_A          252 RVKSISASGHKF-GLAPLGCGWVIWRDE-------EALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRL---  320 (452)
T ss_dssp             TEEEEEEETTTT-TCCCSSCEEEEESSG-------GGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHH---
T ss_pred             CCcEEEECcccc-cCCCCCeEEEEEcCH-------HHHHHHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHH---
Confidence            223566778994 788899999999762       222 222111110          0011   223344443333   


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC---CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCC-
Q 042445          135 EEEFFSKIIDILRETADKCCDRLKEIPCITCPKKP---EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGIT-  210 (246)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~-  210 (246)
                      ....+++..+...++++.+.+.|++++++..+.+.   ....++.++++.......  +...+.+.|.++||.+..... 
T Consensus       321 g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~--~~~~l~~~L~~~Gi~v~~~~~~  398 (452)
T 2dgk_A          321 GREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGY--TLYDLSERLRLRGWQVPAFTLG  398 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEECCTTTBSSEEEEEECTTCCCSC--CHHHHHHHHHHTTCBCCEEECS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCCeEEEEEEecCcccccC--CHHHHHHHHHhcCCeeeeeeCC
Confidence            24567788888999999999999998777643221   234566666653210001  224445567788996543211 


Q ss_pred             --cCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHHh
Q 042445          211 --VGLKDWLRITFAV--EPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       211 --f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~~  243 (246)
                        ....+++|++++.  ++++++..++.|++++++..
T Consensus       399 ~~~~~~~~lRis~~~~~t~e~id~li~~l~~~~~~~~  435 (452)
T 2dgk_A          399 GEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLS  435 (452)
T ss_dssp             TTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence              1125689999995  78899999999998887654

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=99.74  E-value=4.5e-17  Score=141.94  Aligned_cols=212  Identities=14%  Similarity=0.053  Sum_probs=136.9

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCcc-ccccCCcccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVS-MGVFGSIVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~-~~~~~~~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      +.+.++||||.+-+   +++|.++|++||+++++|++|+++..... +.. +..+..  .-+++.|++|.+++| .++|+
T Consensus       263 v~~~~~~~tG~~~~---l~~I~~l~~~~~~~l~vD~a~~~~~~~~~-~~~~~~gi~~--~D~i~~s~hK~l~~p-~~~G~  335 (497)
T 2qma_A          263 VGTAGTTDHGAIDD---LDFIADMAVKHDMWMHVDGAYGGALILSS-HKSRLKGVER--AHSISVDFHKLFYQT-ISCGA  335 (497)
T ss_dssp             EEEBSCTTTCCBCC---HHHHHHHHHHHTCEEEEEETTGGGGGGST-TGGGGTTGGG--CSEEEEETTTTTCCC-SSCEE
T ss_pred             EEcCCCCCCCCCCC---HHHHHHHHHHcCCEEEEehhhhHHHHhCc-chHhhcCccc--CCEEEEcchhccCCC-cceEE
Confidence            67789999999655   89999999999999999999998776433 211 222211  225677899987776 69999


Q ss_pred             EEeeCCCCCcchhhHHHHHHHHhhh-cC----CC-------------CchHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 042445           91 LVTSDPNGILQDSGIVDSIKIFLNI-SS----DP-------------ATFIQGAVPQILEKTEEEFFSKIIDILRETADK  152 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~~~~-~~----~~-------------~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~  152 (246)
                      +++.+.       ..++.+.....+ ..    .+             ..+.+.++...+   ....+++..+...++++.
T Consensus       336 l~~~~~-------~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~l---g~~g~~~~~~~~~~~a~~  405 (497)
T 2qma_A          336 LLVNDK-------SNFKFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNV---GPKALGDMYDHLLAQTLE  405 (497)
T ss_dssp             EEESCG-------GGGGGGCC--------------------CCSCCCTHHHHHHHHHHT---CHHHHHHHHHHHHHHHHH
T ss_pred             EEEeCH-------HHHHHhcCCchhcCCccccCCCccccCCCCCCchhHHHHHHHHHHh---CHHHHHHHHHHHHHHHHH
Confidence            999763       222222110000 00    01             122233333333   245677788888899999


Q ss_pred             HHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEe-e--cChHHHH
Q 042445          153 CCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITF-A--VEPSALE  229 (246)
Q Consensus       153 l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~-~--~~~~~l~  229 (246)
                      +.+.|++++++..+..|..+ ++++++..... ....-...+...+.+.|+.+.++..+...+++|+++ .  .++++++
T Consensus       406 l~~~L~~~~~~~~~~~~~~~-~v~f~~~~~~~-~~~~l~~~l~~~l~~~G~~~~~~~~~~g~~~lRis~~~~~~t~edi~  483 (497)
T 2qma_A          406 VADMIRTNDQFELLAEPSLS-TVLFRATHETA-DLDELNKALRLEALTRGIAVLGETIVDGKTALKFTILNPCLTTSDFE  483 (497)
T ss_dssp             HHHHHHTCTTEEECSCCSSS-EEEEEECCSSS-CHHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHH
T ss_pred             HHHHHhhCCCeEEEcCCCce-EEEEEEcCCcc-CHHHHHHHHHHHHHhCCCEEEEeeEECCEEEEEEEecCCCCCHHHHH
Confidence            99999998887744455554 56666653210 000001234456678899887765555567999998 3  3899999


Q ss_pred             HHHHHHHHHHHHH
Q 042445          230 NGLGRMKAFYDRH  242 (246)
Q Consensus       230 ~~~~~l~~~~~~~  242 (246)
                      ++++.|.++++++
T Consensus       484 ~~~~~l~~~~~~~  496 (497)
T 2qma_A          484 SLLSKINMLAVEL  496 (497)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999988654

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=99.73  E-value=1.5e-16  Score=138.95  Aligned_cols=214  Identities=12%  Similarity=0.047  Sum_probs=139.1

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCC-ccccccCCcccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPF-VSMGVFGSIVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      ++++|+||||.+.+   +++|.++|++||+++++|++|+++.+....+ ..+..+..  .-+++.|++|.+++| .++|+
T Consensus       250 ~~~~~~~~tG~i~~---l~~I~~la~~~g~~lhvD~a~~~~~~~~~~~~~~~~g~~~--~D~i~~~~hK~~~~p-~~~g~  323 (504)
T 2okj_A          250 NATAGTTVYGAFDP---IQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIER--ANSVTWNPHKMMGVL-LQCSA  323 (504)
T ss_dssp             EECBSCSSSCCBCC---HHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGG--CSEEEECTTSTTCCC-SCCEE
T ss_pred             EEeCCCCCCCCcCC---HHHHHHHHHHcCCEEEEehhhhhHHHhCHhhHhhcCCccc--CCEEEECchhhcCCC-cceEE
Confidence            78999999999865   8899999999999999999999887643222 12222211  125667899998766 68999


Q ss_pred             EEeeCCCCCcchhhHHHHHHHH-hhhcC---------------------CCCchHHHHHHHHHhhchHHHHHHHHHHHHH
Q 042445           91 LVTSDPNGILQDSGIVDSIKIF-LNISS---------------------DPATFIQGAVPQILEKTEEEFFSKIIDILRE  148 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~-~~~~~---------------------~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~  148 (246)
                      +++.+.       +++...... .....                     ..+.+.+.++.+++.   ...+++..+...+
T Consensus       324 l~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg---~~g~~~~~~~~~~  393 (504)
T 2okj_A          324 ILVKEK-------GILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKG---TVGFENQINKCLE  393 (504)
T ss_dssp             EEESST-------THHHHHHCCCCSSSCCSCCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred             EEEECH-------HHHHHHhcCCCccccCCcccccCcCCcccCCCCCCCCccHHHHHHHHHHhh---HHHHHHHHHHHHH
Confidence            999873       455543221 11110                     113455555555554   3457778888899


Q ss_pred             HHHHHHHHhhcCCCCcccc--CCCCceEEEEEeccccccCCC----------ChHHHHHHHHHhcCeEEecCCCcCC-CC
Q 042445          149 TADKCCDRLKEIPCITCPK--KPEGSMFVMVKLNYSLLEGIN----------SDMEFALKLAKEESVIVLPGITVGL-KD  215 (246)
Q Consensus       149 ~~~~l~~~L~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~----------~~~~~~~~ll~~~gi~v~pg~~f~~-~~  215 (246)
                      +++.+.+.|++++++..+.  .|..+++.+...+... .+..          .....+.+.|.+.|+.+..+..+.. .+
T Consensus       394 ~a~~l~~~L~~~~~~~~~~~~~p~~~~v~f~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~  472 (504)
T 2okj_A          394 LAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSL-RGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKAN  472 (504)
T ss_dssp             HHHHHHHHHTTCTTEEESSSSCCSSSCEEEEECCGGG-SSCCCCHHHHHHHTTHHHHHHHHHHHHTSCEEEEEEETTEEE
T ss_pred             HHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCccc-cccccchhhHHHHHHHHHHHHHHHHhCCcEEEEeeEECCceE
Confidence            9999999999988887543  4777777654333210 0000          0123344556677754433223333 36


Q ss_pred             eEEEEee---cChHHHHHHHHHHHHHHHHH
Q 042445          216 WLRITFA---VEPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       216 ~iRls~~---~~~~~l~~~~~~l~~~~~~~  242 (246)
                      ++|++++   .++++++++++.|+++.+++
T Consensus       473 ~lRis~~~~~~t~edi~~~~~~l~~~~~~~  502 (504)
T 2okj_A          473 FFRMVISNPAATQSDIDFLIEEIERLGQDL  502 (504)
T ss_dssp             EEEECCCCTTCCHHHHHHHHHHHHHHHTC-
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            8999997   38899999999999887543

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=99.73  E-value=6.3e-17  Score=140.64  Aligned_cols=210  Identities=10%  Similarity=0.012  Sum_probs=135.7

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCcc-ccccCCcccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVS-MGVFGSIVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~-~~~~~~~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      +.++|+||||.+   +++++|.++|++||+++++|++|+.+.+....+.. +..+.. .. .+..+++|.+++| +++||
T Consensus       240 v~~~~~n~tG~~---~~l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~-ad-si~~~~hK~~~~p-~~~G~  313 (486)
T 1js3_A          240 VATLGTTSCCSF---DNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEF-AD-SFNFNPHKWLLVN-FDCSA  313 (486)
T ss_dssp             EEEBSCTTTCCB---CCHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGG-CS-EEEECHHHHSSCC-SSCEE
T ss_pred             EEeCCCCCCCCC---CCHHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccc-cC-eeEEchhhhcCCC-cceEE
Confidence            788999999987   46999999999999999999999986653222221 122221 13 3446789997766 89999


Q ss_pred             EEeeCCCCCcchhhH-HHHHHH---Hh-h-----------------hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHH
Q 042445           91 LVTSDPNGILQDSGI-VDSIKI---FL-N-----------------ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRE  148 (246)
Q Consensus        91 i~~~~~~~~~~~~~~-~~~l~~---~~-~-----------------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~  148 (246)
                      +++.+.       .. .+.+..   +. .                 .+.....+.+.++...+   ....+++..+...+
T Consensus       314 l~~~~~-------~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~---g~~g~~~~~~~~~~  383 (486)
T 1js3_A          314 MWVKRR-------TDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMY---GVKGLQAYIRKHVQ  383 (486)
T ss_dssp             EEESCH-------HHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred             EEEeCH-------HHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHH---hHHHHHHHHHHHHH
Confidence            999772       22 222211   10 0                 00012234444444443   24567888888899


Q ss_pred             HHHHHHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec---Ch
Q 042445          149 TADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV---EP  225 (246)
Q Consensus       149 ~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~---~~  225 (246)
                      +++.+.+.|++++++..+..|..+++.+ +++...  .  .+.++ .+.|.+.|+.+.++..+...+++|+++..   ++
T Consensus       384 ~a~~l~~~L~~~~~~~~~~~~~~~~v~f-~~~~~~--~--~~~~l-~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~  457 (486)
T 1js3_A          384 LSHEFEAFVLQDPRFEVCAEVTLGLVCF-RLKGSD--G--LNEAL-LERINSARKIHLVPCRLRGQFVLRFAICSRKVES  457 (486)
T ss_dssp             HHHHHHHHHHHCTTEEECSCCCSSEEEE-EESSCH--H--HHHHH-HHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCH
T ss_pred             HHHHHHHHHhcCCCeEEeCCCceeEEEE-EecChH--H--HHHHH-HHHHHhcCCEEEEEEEECCEEEEEEEeCCCCCCH
Confidence            9999999999988887544566555443 454210  0  03344 44555667654443445456799999863   68


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q 042445          226 SALENGLGRMKAFYDRHA  243 (246)
Q Consensus       226 ~~l~~~~~~l~~~~~~~~  243 (246)
                      +++++++++|++++++..
T Consensus       458 ~di~~~~~~l~~~~~~~~  475 (486)
T 1js3_A          458 GHVRLAWEHIRGLAAELL  475 (486)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            899999999999887654

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=99.73  E-value=2.6e-16  Score=131.80  Aligned_cols=210  Identities=11%  Similarity=0.059  Sum_probs=134.4

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.++++    +++   ||||.+.+   +++|.++|++||+++|+||+|+.+.... . .   .++... .+.+.|+
T Consensus       112 ~~l~~~i~~~~~~v~~~---~~tG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~~~-~-~---~~~~~~-~i~~~s~  179 (375)
T 2fnu_A          112 LALEKLINERTKAIVSV---DYAGKSVE---VESVQKLCKKHSLSFLSDSSHALGSEYQ-N-K---KVGGFA-LASVFSF  179 (375)
T ss_dssp             GGSGGGCCTTEEEEEEE---CGGGCCCC---HHHHHHHHHHHTCEEEEECTTCTTCEET-T-E---ETTSSS-SEEEEEC
T ss_pred             HHHHhhcCcCceEEEEe---CCcCCccC---HHHHHHHHHHcCCEEEEECccccCCeEC-C-e---eccccC-CeEEEeC
Confidence            4555555543    333   45999877   7899999999999999999998654321 1 1   122211 3778888


Q ss_pred             c--cccccCCceEEEEEee-CCCCCcchhhHHHHHHHHhhhc-----------------CCCCchHHHHHHHHHhhchHH
Q 042445           78 S--KRGIVPGLRLGWLVTS-DPNGILQDSGIVDSIKIFLNIS-----------------SDPATFIQGAVPQILEKTEEE  137 (246)
Q Consensus        78 s--K~~~~~g~r~G~i~~~-~~~~~~~~~~~~~~l~~~~~~~-----------------~~~~~~~q~~~~~~l~~~~~~  137 (246)
                      |  |.++. |  +|++++. +.       ++++.+......+                 +.++++...+....     ..
T Consensus       180 s~~K~~~~-g--~g~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-----~~  244 (375)
T 2fnu_A          180 HAIKPITT-A--EGGAVVTNDS-------ELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQ-----LK  244 (375)
T ss_dssp             CTTSSSCC-S--SCEEEEESCH-------HHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHH-----HT
T ss_pred             CCCCCccc-c--CceEEEeCCH-------HHHHHHHHHHhcCCccccccccccccccccCCCCHHHHHHHHHH-----HH
Confidence            8  99865 6  7888885 32       6777776653211                 02233322222211     23


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCccccCC----CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCC---
Q 042445          138 FFSKIIDILRETADKCCDRLKEIPCITCPKKP----EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGIT---  210 (246)
Q Consensus       138 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~---  210 (246)
                      ++++..+..+++++.+.+.|++++++.....+    ..++++++.++....    .+.+.+.+.|.++||.+..+..   
T Consensus       245 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~L~~~gi~v~~~~~p~~  320 (375)
T 2fnu_A          245 KAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKFF----TCKKLILESLHKRGILAQVHYKPIY  320 (375)
T ss_dssp             THHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGGGG----GGHHHHHHHHHHTTEECBCCCCCGG
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCCCcceEEEEEEeCcccc----chHHHHHHHHHHCCCCccccccccc
Confidence            46677888889999999999998777632221    124555777764210    0233445566788999983211   


Q ss_pred             ----cC-------C-------CCeEEEEeec--ChHHHHHHHHHHHHHHHHH
Q 042445          211 ----VG-------L-------KDWLRITFAV--EPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       211 ----f~-------~-------~~~iRls~~~--~~~~l~~~~~~l~~~~~~~  242 (246)
                          |+       .       .+++|+++..  ++++++++++.|.+++++.
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~  372 (375)
T 2fnu_A          321 QYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFESF  372 (375)
T ss_dssp             GSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Confidence                11       1       2689999995  8899999999999998764

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.73  E-value=5.6e-17  Score=138.57  Aligned_cols=214  Identities=14%  Similarity=0.093  Sum_probs=129.0

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.++++    ++++|+||||.+.+   +++|.++|+++|+++|+|++|..+.+.+.+   + ..   ...+++.|+
T Consensus       135 ~~l~~~i~~~~~~v~~~~~~n~~G~~~~---l~~i~~~a~~~g~~livD~~~~~~g~~~~~---~-~~---~~Di~~~s~  204 (421)
T 2ctz_A          135 EEFLALTDEKTRAWWVESIGNPALNIPD---LEALAQAAREKGVALIVDNTFGMGGYLLRP---L-AW---GAALVTHSL  204 (421)
T ss_dssp             HHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGGGGGTSCCG---G-GG---TCSEEEEET
T ss_pred             HHHHHhhccCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCcccccccCCc---c-cc---CCeEEEECC
Confidence            4556666554    88999999999998   899999999999999999999323332221   1 12   234889999


Q ss_pred             ccccccCCceEEEEEeeC-CCCC----cchhhH---------------------HHHHHH--HhhhcCCCCchHHHHHHH
Q 042445           78 SKRGIVPGLRLGWLVTSD-PNGI----LQDSGI---------------------VDSIKI--FLNISSDPATFIQGAVPQ  129 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~-~~~~----~~~~~~---------------------~~~l~~--~~~~~~~~~~~~q~~~~~  129 (246)
                      +|.++++|.++|++++.+ ....    ..  .+                     ....+.  ...++...+++..+++..
T Consensus       205 ~K~l~~~g~~~G~~~~~~~~~~~~~~~~~--~l~~~~~g~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~  282 (421)
T 2ctz_A          205 TKWVGGHGAVIAGAIVDGGNFPWEGGRYP--LLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLL  282 (421)
T ss_dssp             TTTTTCSSCCCCEEEEECSCSCCTTTTCH--HHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHH
T ss_pred             cccccCCCCcEEEEEEeccchhhcccchh--hhccccchhhhhhhhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHHc
Confidence            999999999999998863 1111    00  11                     111110  111333556666666555


Q ss_pred             HHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC-----------------CCceEEEEEeccccccCCCChHH
Q 042445          130 ILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKP-----------------EGSMFVMVKLNYSLLEGINSDME  192 (246)
Q Consensus       130 ~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-----------------~~g~~~~~~~~~~~~~~~~~~~~  192 (246)
                      .++.     +..+.+...++.+.+.+.|+++|++..+..|                 ..|..+.+.++...     .+..
T Consensus       283 ~l~~-----l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~~~~~~~~~~~~~~~~~~~g~ivsf~l~~~~-----~~~~  352 (421)
T 2ctz_A          283 GMET-----LSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKGGY-----EAAK  352 (421)
T ss_dssp             HHTT-----HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHHTTCCCSEEEEEETTHH-----HHHH
T ss_pred             Ccch-----HHHHHHHHHHhHHHHHHHHHhCCCeeEEECCCCCCCCCHHHHHHhccCCCceEEEEEeCCCH-----HHHH
Confidence            5552     4445555668889999999988877643222                 23445555665310     0222


Q ss_pred             HHHHHHHhcCeEEecCCCc----------------------CC-CCeEEEEeecChHHHHHHHHHHHHHH
Q 042445          193 FALKLAKEESVIVLPGITV----------------------GL-KDWLRITFAVEPSALENGLGRMKAFY  239 (246)
Q Consensus       193 ~~~~ll~~~gi~v~pg~~f----------------------~~-~~~iRls~~~~~~~l~~~~~~l~~~~  239 (246)
                      .+...++..++.+..|..+                      +. ++.||+|++.+  ++++.++.|.+++
T Consensus       353 ~~~~~l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~~vRlS~g~e--~~~~li~~l~~al  420 (421)
T 2ctz_A          353 RFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVGLE--HVEDLKAELKEAL  420 (421)
T ss_dssp             HHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEECCSS--CHHHHHHHHHHHT
T ss_pred             HHHHhCCcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeCCC--CHHHHHHHHHHHh
Confidence            2222233334444444211                      01 48999999863  4566777776654

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=99.72  E-value=7.9e-17  Score=135.23  Aligned_cols=209  Identities=19%  Similarity=0.190  Sum_probs=128.7

Q ss_pred             hhhhhhhccc--cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcc-cCCCCCccccccCCcccEEEEcccc
Q 042445            2 ELINQDITRE--FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLA-FGNTPFVSMGVFGSIVPLLTLGSIS   78 (246)
Q Consensus         2 e~~~~~~~~~--~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~-~~~~~~~~~~~~~~~~~~i~~~s~s   78 (246)
                      +.+++.++++  .+. |+||||...+   +++|.++|+++|+++|+|++|+.+. +++...   ..+.    -+.+.||+
T Consensus       115 ~~l~~~l~~~~~~v~-~~n~~G~~~~---l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~---~~~~----d~~~~S~~  183 (373)
T 3frk_A          115 SLIESAITEKTKAII-AVHLYGQPAD---MDEIKRIAKKYNLKLIEDAAQAHGSLYKGMKV---GSLG----DAAGFSFY  183 (373)
T ss_dssp             GGTGGGCCTTEEEEE-EECCTTCCCC---HHHHHHHHHHHTCEEEEECTTCTTCEETTEET---TSSS----SEEEEECC
T ss_pred             HHHHHhcCCCCeEEE-EECCCcCccc---HHHHHHHHHHcCCEEEEECCcccCCEECCEec---cccc----cEEEEeCc
Confidence            4556666554  222 8899999765   8899999999999999999998644 232211   1111    27778877


Q ss_pred             --cccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhc-------------CCCCchHHHHHHHHHhhchHHHHHHHH
Q 042445           79 --KRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNIS-------------SDPATFIQGAVPQILEKTEEEFFSKII  143 (246)
Q Consensus        79 --K~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~-------------~~~~~~~q~~~~~~l~~~~~~~~~~~~  143 (246)
                        |.++.+|. .|++++++.       ++.+.++.....+             +.++++..++....+     ..+++..
T Consensus       184 ~~K~l~~~g~-gg~~~~~~~-------~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~~-----~~~~~~~  250 (373)
T 3frk_A          184 PAKNLGSLGD-GGAVVTNDK-------DLAEKIKALSNYGSEKKYHHIYKGFNSRLDELQAGFLRVKL-----KYLDKWN  250 (373)
T ss_dssp             TTSSSCCSSS-CEEEEESCH-------HHHHHHHHHHBTTCSBTTBCCSCCCBCCCCHHHHHHHHHHH-----HTHHHHH
T ss_pred             CCCccCccce-eEEEEeCCH-------HHHHHHHHHHhcCcccCCccccccccCCCCHHHHHHHHHHH-----HHHHHHH
Confidence              98755353 788888763       5777776554311             122444333332222     2355666


Q ss_pred             HHHHHHHHHHHHHhhcCCCCccccCCCCceEEE--EEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--------
Q 042445          144 DILRETADKCCDRLKEIPCITCPKKPEGSMFVM--VKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--------  213 (246)
Q Consensus       144 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--------  213 (246)
                      ++.+++.+.+.+.|++++ +.....+.++...|  +.+...       +.+.+.+.|.++||.+.++.....        
T Consensus       251 ~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~  322 (373)
T 3frk_A          251 EERRKIAQKYIAGINNPN-VIIPVEADYAKHVWYTFVIRSE-------KRDELQKYLNNNGIGTLIHYPIPIHLQQAYKD  322 (373)
T ss_dssp             HHHHHHHHHHHHHCCCTT-EECCCCCTTEECCCSSEEEEES-------SHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGG
T ss_pred             HHHHHHHHHHHHHhccCc-eEeccCCCCCceeeEEEEEEeC-------CHHHHHHHHHHCCCCcccCcCCccccChHHHh
Confidence            677778888888888875 44322223222222  112211       345556677888999987652110        


Q ss_pred             ---------------CCeEEEEeec--ChHHHHHHHHHHHHHHHHH
Q 042445          214 ---------------KDWLRITFAV--EPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       214 ---------------~~~iRls~~~--~~~~l~~~~~~l~~~~~~~  242 (246)
                                     .+.+|+++..  +++++++.++.|+++..++
T Consensus       323 ~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~~~~  368 (373)
T 3frk_A          323 LGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINAWKLEH  368 (373)
T ss_dssp             GCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTCC---
T ss_pred             cCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHhhhh
Confidence                           2689999985  8999999999998876553

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=99.72  E-value=1.3e-16  Score=134.68  Aligned_cols=211  Identities=14%  Similarity=0.091  Sum_probs=129.6

Q ss_pred             hhhhhhhccc-cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcc-cCCCCCccccccCCcccEEEEcccc-
Q 042445            2 ELINQDITRE-FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLA-FGNTPFVSMGVFGSIVPLLTLGSIS-   78 (246)
Q Consensus         2 e~~~~~~~~~-~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~-~~~~~~~~~~~~~~~~~~i~~~s~s-   78 (246)
                      +.+++.++++ -...|+||||...+   +++|.++|+++|+++|+|++|+.+. +.+..   ...+.  +  +.+.||| 
T Consensus       135 ~~l~~~~~~~~~~v~~~n~tG~~~~---~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~---~~~~~--d--i~~~S~s~  204 (391)
T 3dr4_A          135 AKLEALITPRTKAIMPVHLYGQICD---MDPILEVARRHNLLVIEDAAEAVGATYRGKK---SGSLG--D--CATFSFFG  204 (391)
T ss_dssp             GGSGGGCCTTEEEECCBCGGGCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEETTEE---TTSSS--S--EEEEECBT
T ss_pred             HHHHHhcCCCceEEEEECCCCChhh---HHHHHHHHHHcCCEEEEECcccccceECCee---ecccC--C--EEEEECCC
Confidence            4455555544 11126799999765   8889999999999999999999644 22211   11111  1  6677777 


Q ss_pred             -cccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCC-------------CCchHHHHHHHHHhhchHHHHHHHHH
Q 042445           79 -KRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSD-------------PATFIQGAVPQILEKTEEEFFSKIID  144 (246)
Q Consensus        79 -K~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~-------------~~~~~q~~~~~~l~~~~~~~~~~~~~  144 (246)
                       |.+  +|.+.|++++++.       .+.+.+......+..             .+.....++.....   ...+++..+
T Consensus       205 ~K~l--~~g~gg~~~~~~~-------~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l~aa~~~~~---~~~~~~~~~  272 (391)
T 3dr4_A          205 NAII--TTGEGGMITTNDD-------DLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQ---LERVDEHLA  272 (391)
T ss_dssp             TSSS--CCBSCEEEEESCH-------HHHHHHHHHHBTTCCTTSTTCCSSCCCBCBCCHHHHHHHHHH---HHTHHHHHH
T ss_pred             CCcC--CcCCeEEEEECCH-------HHHHHHHHHHhcCCCCCCcccccccccccCCCHHHHHHHHHH---HHHHHHHHH
Confidence             765  4457899988873       577776655322111             12222222222221   234566667


Q ss_pred             HHHHHHHHHHHHhhcCCCCccccC--C----CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCc---C---
Q 042445          145 ILRETADKCCDRLKEIPCITCPKK--P----EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITV---G---  212 (246)
Q Consensus       145 ~~~~~~~~l~~~L~~~~~~~~~~~--~----~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f---~---  212 (246)
                      ..+++.+.+.+.|+++ ++.....  +    ...+.+++.++...  +.  +.+.+.+.|.++||.+.++...   .   
T Consensus       273 ~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~--~~~~l~~~L~~~GI~v~~~~~p~~~~~~~  347 (391)
T 3dr4_A          273 ARERVVGWYEQKLARL-GNRVTKPHVALTGRHVFWMYTVRLGEGL--ST--TRDQVIKDLDALGIESRPVFHPMHIMPPY  347 (391)
T ss_dssp             HHHHHHHHHHHHHGGG-TTSEECCCCCTTSCCCCSSEEEEECSSC--SS--CHHHHHHHHHHTTCCCEECCCCGGGSGGG
T ss_pred             HHHHHHHHHHHHhhcC-CccccCcCCCCCCcceeEEEEEEECCcc--ch--hHHHHHHHHHHCCCceeecCCccccChhh
Confidence            7778888888899887 6653222  1    12234566665410  11  3455566677889999987521   0   


Q ss_pred             -------C-------CCeEEEEeec--ChHHHHHHHHHHHHHH
Q 042445          213 -------L-------KDWLRITFAV--EPSALENGLGRMKAFY  239 (246)
Q Consensus       213 -------~-------~~~iRls~~~--~~~~l~~~~~~l~~~~  239 (246)
                             .       .+.+|+++..  ++++++++++.|++++
T Consensus       348 ~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l  390 (391)
T 3dr4_A          348 AHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQVL  390 (391)
T ss_dssp             GGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred             hhcCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence                   0       4679999884  8999999999887653

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=99.71  E-value=7.2e-16  Score=133.49  Aligned_cols=220  Identities=14%  Similarity=0.051  Sum_probs=143.9

Q ss_pred             hhhhhhhc---cc--cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccC-CcccCCCCCccccccCCcccEEEEc
Q 042445            2 ELINQDIT---RE--FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYG-HLAFGNTPFVSMGVFGSIVPLLTLG   75 (246)
Q Consensus         2 e~~~~~~~---~~--~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~i~~~   75 (246)
                      |.+++.++   ++  +++.|+||+  ..   ++++|.++|++||+++++|+++. ++...+..+.++.   .  --+++.
T Consensus       193 d~le~~l~~~~~klIi~~~s~~~~--~~---dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~---~--aDiv~~  262 (490)
T 2a7v_A          193 NQLALTARLFRPRLIIAGTSAYAR--LI---DYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK---H--ADIVTT  262 (490)
T ss_dssp             HHHHHHHHHHCCSEEEECCSSCCS--CC---CHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG---T--CSEEEE
T ss_pred             HHHHHHHhhcCCcEEEEcCCCCCC--cc---cHHHHHHHHHHcCCEEEEccccccccccCCcCCCCCC---C--CCEEEE
Confidence            44555553   23  567788885  22   48999999999999999999976 4444433222332   1  127889


Q ss_pred             ccccccccCCceEEEEEeeCCCC---------CcchhhHHHHHHHHhhhc--CCCCchHHHHHHHHHhhchHHHHHHHHH
Q 042445           76 SISKRGIVPGLRLGWLVTSDPNG---------ILQDSGIVDSIKIFLNIS--SDPATFIQGAVPQILEKTEEEFFSKIID  144 (246)
Q Consensus        76 s~sK~~~~~g~r~G~i~~~~~~~---------~~~~~~~~~~l~~~~~~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~  144 (246)
                      |++|.++  |.|.|++++++...         .+.  ++.++++.....+  ++++.....++..++........++.++
T Consensus       263 S~hK~l~--Gp~GG~i~~~~~~~~~~~~~~~~~~~--~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~  338 (490)
T 2a7v_A          263 TTHKTLR--GARSGLIFYRKGVKAVDPKTGREIPY--TFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSL  338 (490)
T ss_dssp             ESSGGGC--SCSCEEEEEECSEEEEETTTEEEEEC--CCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             CCcccCc--cccchheeeccchhcccccccchhhH--HHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            9999864  45679999987200         000  2455666553322  2344444455555555433234477788


Q ss_pred             HHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcC-----CCCeEEE
Q 042445          145 ILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG-----LKDWLRI  219 (246)
Q Consensus       145 ~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~-----~~~~iRl  219 (246)
                      ++.++++.+.+.|++. |+..+..+...+++|+++....+     +.+.+.+.|++.||.+..+..++     .+..||+
T Consensus       339 ~~~~na~~L~~~L~~~-G~~v~~~~t~t~lv~vdl~~~g~-----~~~~~~~~L~~~GI~v~~~~~p~d~~p~~~~~iRi  412 (490)
T 2a7v_A          339 QVLKNARAMADALLER-GYSLVSGGTDNHLVLVDLRPKGL-----DGARAERVLELVSITANKNTCPGDRSAITPGGLRL  412 (490)
T ss_dssp             HHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECTTTTC-----CHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEE
T ss_pred             HHHHHHHHHHHHHHHc-CcEEecCCCCCeEEEEEeCCCCC-----CHHHHHHHHHhCCeEEecCccCCCCCCCCCCceEe
Confidence            8899999999999987 67643333456888888865321     44556778889999998654333     1688999


Q ss_pred             Eee------cChHHHHHHHHHHHHHHHH
Q 042445          220 TFA------VEPSALENGLGRMKAFYDR  241 (246)
Q Consensus       220 s~~------~~~~~l~~~~~~l~~~~~~  241 (246)
                      +..      .++++++++++.|.++++.
T Consensus       413 g~~a~t~~g~~~~d~~~~~~~i~~~l~~  440 (490)
T 2a7v_A          413 GAPALTSRQFREDDFRRVVDFIDEGVNI  440 (490)
T ss_dssp             ESHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             cccccccCCCCHHHHHHHHHHHHHHHHh
Confidence            763      3788999999999888753

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=99.71  E-value=4e-16  Score=136.08  Aligned_cols=224  Identities=13%  Similarity=-0.018  Sum_probs=141.1

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHc------CCEEEEccccCCccc---CCCCCccccccCCc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKL------GIMVIANEVYGHLAF---GNTPFVSMGVFGSI   68 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~------~~~ii~De~y~~~~~---~~~~~~~~~~~~~~   68 (246)
                      |.+++.+.++    ++++|+||||.+.+   +++|.++|+++      |+++++|++|+++..   .+.....   +...
T Consensus       193 ~~l~~~i~~~t~~v~~~~~~n~tG~~~~---l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~---~~~~  266 (502)
T 3hbx_A          193 QQAVDMVDENTICVAAILGSTLNGEFED---VKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWD---FRLP  266 (502)
T ss_dssp             HHHHHHCCTTEEEEEEEBSCTTTCCBCC---HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCS---TTST
T ss_pred             HHHHHHHhhCCEEEEEecCCCCCCcccC---HHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccc---cCCC
Confidence            4556666654    67899999999966   88888889998      999999999997652   2211111   1111


Q ss_pred             ccEEEEcccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHH-hhh--------c--CCCCchHHHHHHHHHhhchHH
Q 042445           69 VPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIF-LNI--------S--SDPATFIQGAVPQILEKTEEE  137 (246)
Q Consensus        69 ~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~-~~~--------~--~~~~~~~q~~~~~~l~~~~~~  137 (246)
                      .-.++..|.+|. ++++.++||+++.+.       +.+...... ..+        .  ++.+.....+...++......
T Consensus       267 ~~D~v~~s~hK~-l~~p~g~G~~~~~~~-------~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~  338 (502)
T 3hbx_A          267 LVKSINVSGHKY-GLVYAGIGWVIWRNK-------EDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHE  338 (502)
T ss_dssp             TEEEEEEETTTT-TCCCSSCEEEEESSG-------GGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHH
T ss_pred             CceEEEECcccc-cCCCCCeEEEEEeCH-------HHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHHHH
Confidence            223566778898 566678999888763       222111110 010        0  111111222222233321234


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCccccCC-CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcC---C
Q 042445          138 FFSKIIDILRETADKCCDRLKEIPCITCPKKP-EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG---L  213 (246)
Q Consensus       138 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~---~  213 (246)
                      .+.+..+...++++.+.+.|++++++.. ..+ ....++.++++...  +  -+...+.+.|.++||.+.......   .
T Consensus       339 g~~~~~~~~~~~a~~l~~~L~~~~~~~~-~~~~~~~~~v~f~~~~~~--~--~~~~~l~~~L~~~Gi~v~~~~~p~~~~~  413 (502)
T 3hbx_A          339 GYRNVMENCRENMIVLREGLEKTERFNI-VSKDEGVPLVAFSLKDSS--C--HTEFEISDMLRRYGWIVPAYTMPPNAQH  413 (502)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTTCEEE-CSCSSSSSEEEEEESSCS--S--CCHHHHHHHHHTTTCBCCEEECCTTCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEE-EeCCCCceEEEEEecCCC--c--CCHHHHHHHHHhCCcEEeeccCCcccCC
Confidence            4677778888899999999999977874 333 45567777776421  0  134445667788999875432221   2


Q ss_pred             CCeEEEEeec--ChHHHHHHHHHHHHHHHHHhh
Q 042445          214 KDWLRITFAV--EPSALENGLGRMKAFYDRHAE  244 (246)
Q Consensus       214 ~~~iRls~~~--~~~~l~~~~~~l~~~~~~~~~  244 (246)
                      ..++|+++..  +.++++.+++.|+++++++.+
T Consensus       414 ~~~lRisv~~~~t~edid~li~~L~~~l~~l~~  446 (502)
T 3hbx_A          414 ITVLRVVIREDFSRTLAERLVIDIEKVMRELDE  446 (502)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            4689999994  889999999999999887654

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=99.69  E-value=5.3e-16  Score=129.99  Aligned_cols=205  Identities=17%  Similarity=0.132  Sum_probs=131.5

Q ss_pred             hhhhhhhccc-cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcc-cCCCCCccccccCCcccEEEEccc--
Q 042445            2 ELINQDITRE-FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLA-FGNTPFVSMGVFGSIVPLLTLGSI--   77 (246)
Q Consensus         2 e~~~~~~~~~-~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~-~~~~~~~~~~~~~~~~~~i~~~s~--   77 (246)
                      +.+++.++++ -...|+||||...+   +++|.++|+++|+++|+|++|+.+. +++....   .++    .+++.||  
T Consensus       114 ~~l~~~i~~~~~~v~~~~~~G~~~~---~~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~---~~~----di~~~Sf~~  183 (367)
T 3nyt_A          114 QLLEAAITPRTKAIIPVSLYGQCAD---FDAINAIASKYGIPVIEDAAQSFGASYKGKRSC---NLS----TVACTSFFP  183 (367)
T ss_dssp             GGTGGGCCTTEEEECCBCGGGCCCC---HHHHHHHHHHTTCCBEEECTTTTTCEETTEETT---SSS----SEEEEECCT
T ss_pred             HHHHHhcCcCCcEEEeeCCccChhh---HHHHHHHHHHcCCEEEEECccccCCeECCeecc---CCC----CEEEEECCC
Confidence            4566666554 11128899996654   8899999999999999999998543 3332211   122    3778887  


Q ss_pred             ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhh-------------cCCCCchHHHHHHHHHhhchHHHHHHHHH
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNI-------------SSDPATFIQGAVPQILEKTEEEFFSKIID  144 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~  144 (246)
                      +|.++++|. .|++++++.       ++.+.++.....             ++.++++..+++...+..     +++..+
T Consensus       184 ~K~l~~~g~-gg~~~~~~~-------~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~-----~~~~~~  250 (367)
T 3nyt_A          184 SAPLGCYGD-GGAIFTNDD-------ELATAIRQIARHGQDRRYHHIRVGVNSRLDTLQAAILLPKLEI-----FEEEIA  250 (367)
T ss_dssp             TSSSCCSSC-CEEEEESCH-------HHHHHHHHHTBTTEEETTEECSCCCBCCCCHHHHHHHHHHHHT-----HHHHHH
T ss_pred             CCcCCCcCc-eeEEEeCCH-------HHHHHHHHHHhcCCCcCceeeccCcCCCccHHHHHHHHHHHHH-----HHHHHH
Confidence            899887676 899998653       777777765331             235666666666555542     445555


Q ss_pred             HHHHHHHHHHHHhhcCCCCccccCCCCc----eEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcC--------
Q 042445          145 ILRETADKCCDRLKEIPCITCPKKPEGS----MFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG--------  212 (246)
Q Consensus       145 ~~~~~~~~l~~~L~~~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~--------  212 (246)
                      +.+++++.+.+.|+++ ++.....+.++    +.+.+.++         +.+.+.+.|.++||.+.++....        
T Consensus       251 ~~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~---------~~~~l~~~L~~~GI~~~~~~~~~~~~~~~~~  320 (367)
T 3nyt_A          251 LRQKVAAEYDLSLKQV-GIGTPFIEVNNISVYAQYTVRMD---------NRESVQASLKAAGVPTAVHYPIPLNKQPAVA  320 (367)
T ss_dssp             HHHHHHHHHHHHHHHT-TCCCCCCCTTEECCCSSEEEECS---------SHHHHHHHHHHHTCCCBCSCSSCGGGSGGGC
T ss_pred             HHHHHHHHHHHHhccC-CeeccCCCCCCceeeEEEEEEeC---------CHHHHHHHHHHCCCceeccCCCccccChhhh
Confidence            6667777888888876 34322222221    22333332         34455667888999998765311        


Q ss_pred             -------C-----CCeEEEEeec--ChHHHHHHHHHHHHHH
Q 042445          213 -------L-----KDWLRITFAV--EPSALENGLGRMKAFY  239 (246)
Q Consensus       213 -------~-----~~~iRls~~~--~~~~l~~~~~~l~~~~  239 (246)
                             .     .+.+|+++..  ++++++..++.|.+.-
T Consensus       321 ~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~~~  361 (367)
T 3nyt_A          321 DEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTNLE  361 (367)
T ss_dssp             CTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC--
T ss_pred             ccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence                   0     4678998884  8899999888887653

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=99.69  E-value=2.1e-16  Score=136.37  Aligned_cols=203  Identities=11%  Similarity=0.087  Sum_probs=129.5

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      +.++||||||.+.+   +++|.++|+++|+++++|++|+.+..+-.+. ....+....+ +++.|++|.+ +++.++||+
T Consensus       236 v~~~~nn~tG~i~~---l~~I~~la~~~g~~v~vD~A~~~~~~g~~~~-~~~~~~~~~D-~~~~s~hK~~-~~p~g~G~l  309 (456)
T 2z67_A          236 LSTLTFFPPRNSDD---IVEIAKICENYDIPHIINGAYAIQNNYYLEK-LKKAFKYRVD-AVVSSSDKNL-LTPIGGGLV  309 (456)
T ss_dssp             EEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHHHHHH-HHHHHTSCCS-EEEEEHHHHH-CCCSSCEEE
T ss_pred             EEeCCCCCCCCcCC---HHHHHHHHHHcCCcEEEECcchHHHHHhhHH-HHHhhCCCCC-EEEEcCCCCc-CCCCCeEEE
Confidence            57899999999965   8899999999999999999999776421000 1111111112 5678899974 555899999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhhhcCCCC-chHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCC---CCcccc
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLNISSDPA-TFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIP---CITCPK  167 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~  167 (246)
                      ++.+.       ++++.+......+...+ .+.+.++...+   ....+++..+...++++.+.+.|++++   |+. +.
T Consensus       310 ~~~~~-------~~~~~l~~~~~g~~~~~~~~~~~aal~~l---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~-v~  378 (456)
T 2z67_A          310 YSTDA-------EFIKEISLSYPGRASATPVVNTLVSLLSM---GSKNYLELVKNQKNSKKLLDELLNDLSKKTGGK-FL  378 (456)
T ss_dssp             EESCH-------HHHHHHHTTSCSCBCSHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCC-BC
T ss_pred             EEcCH-------HHHhhcCcCCCCCCCCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCE-ec
Confidence            99542       67776643211111111 22333333333   245678888889999999999998874   655 34


Q ss_pred             CCCCceEEEEEeccccccCCCChHHHHHHHHHhcCe---EEe------cCCCcCC--CCeEEEEeec--ChHHHHHHHHH
Q 042445          168 KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESV---IVL------PGITVGL--KDWLRITFAV--EPSALENGLGR  234 (246)
Q Consensus       168 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi---~v~------pg~~f~~--~~~iRls~~~--~~~~l~~~~~~  234 (246)
                      .|.  .++++.+....     ...++ .+.|.++||   .+.      +|..|..  .+++|+|++.  +++++++++++
T Consensus       379 ~~~--~~v~~~~~~~~-----~~~~l-~~~L~~~gi~~~rv~~~~g~f~G~~~~~~~~~~vr~s~~~~~t~eeid~~l~~  450 (456)
T 2z67_A          379 DVE--SPIASCISVNS-----DPVEI-AAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSK  450 (456)
T ss_dssp             CCC--CSSEEEEECSS-----CHHHH-HHHHHHTTEESCEEECTTCHHHHTCSSCCSCCEEEEECCTTCCHHHHHHHHHH
T ss_pred             CCC--CeEEEEEeccc-----HHHHH-HHHHHHcCCCcceEEeecCccccccccccCcchhhhhhhcCCCHHHHHHHHHH
Confidence            555  55565662111     02344 445667765   343      2334333  5799999983  89999999999


Q ss_pred             HHHHH
Q 042445          235 MKAFY  239 (246)
Q Consensus       235 l~~~~  239 (246)
                      |++++
T Consensus       451 L~~~~  455 (456)
T 2z67_A          451 LEKIL  455 (456)
T ss_dssp             HHTC-
T ss_pred             HHHHh
Confidence            98754

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=99.67  E-value=1.6e-15  Score=130.15  Aligned_cols=196  Identities=18%  Similarity=0.147  Sum_probs=122.8

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEcc--c-cCCcccCCCCCccccccCCcccEEEEccccccc----ccC
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANE--V-YGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRG----IVP   84 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De--~-y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~----~~~   84 (246)
                      ++++| ||||.+.+   +++|.++|+++|+++++|-  . |..+.       ....++.  + +++.| +|.|    ++.
T Consensus       201 ~i~~p-n~tG~~~~---l~~i~~la~~~g~~vivd~d~~a~g~~~-------~~~~~g~--D-~~~~s-~kk~~~~~~~~  265 (438)
T 1wyu_A          201 VVQNP-NFLGALED---LGPFAEAAHGAGALFVAVADPLSLGVLK-------PPGAYGA--D-IAVGD-GQSLGLPMGFG  265 (438)
T ss_dssp             EEESS-CTTSBCCC---HHHHHHHHHHTTCEEEEECCTTGGGTBC-------CHHHHTC--S-EEEEE-CTTTTCCCGGG
T ss_pred             EEECC-CCCeEEec---HHHHHHHHHHcCCEEEEEechhhccCcC-------CCccCCC--C-EEEEC-CcccCCCccCC
Confidence            78889 99999985   8999999999999999652  2 32211       1111221  2 44444 5543    355


Q ss_pred             CceEEEEEeeCCCCCcchhhHHHHHHHH-------------------------h--hhcCCC---CchHHHHHHHHHhhc
Q 042445           85 GLRLGWLVTSDPNGILQDSGIVDSIKIF-------------------------L--NISSDP---ATFIQGAVPQILEKT  134 (246)
Q Consensus        85 g~r~G~i~~~~~~~~~~~~~~~~~l~~~-------------------------~--~~~~~~---~~~~q~~~~~~l~~~  134 (246)
                      |.++||+++++        ++++.+...                         .  ..+.+.   +.+...++..++...
T Consensus       266 Gp~~G~l~~~~--------~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~  337 (438)
T 1wyu_A          266 GPHFGFLATKK--------AFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAAL  337 (438)
T ss_dssp             CSCCEEEEECG--------GGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHH
T ss_pred             CCCeeEEEEcH--------HHHHhCCCceeccccccCCCcceeeeccccccccchhcccCCccchHHHHHHHHHHHHHHh
Confidence            66899999987        554443110                         0  011122   111121122224432


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEE--ecCCCcC
Q 042445          135 EEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIV--LPGITVG  212 (246)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v--~pg~~f~  212 (246)
                      ....+++..+...++++.+.+.|++++|+.. ..+. .+|.++.+....     +..++.. .|.++||.+  .++.+|+
T Consensus       338 ~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~-~~~~-~~~~~~~~~~~~-----~~~~~~~-~L~~~gi~v~~~~~~~~~  409 (438)
T 1wyu_A          338 GPEGLREVALKSVEMAHKLHALLLEVPGVRP-FTPK-PFFNEFALALPK-----DPEAVRR-ALAERGFHGATPVPREYG  409 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSTTCEE-CSCS-SBCSEEEEECSS-----CHHHHHH-HHHHTTCCCCEECCTTSC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcCCCeEE-CCCC-CeEEEEEEeCCC-----CHHHHHH-HHHHCCceeccccccccC
Confidence            3456788888999999999999999888874 3332 444433343211     2445544 555789998  6776664


Q ss_pred             CCCeEEEEeec--ChHHHHHHHHHHHHHH
Q 042445          213 LKDWLRITFAV--EPSALENGLGRMKAFY  239 (246)
Q Consensus       213 ~~~~iRls~~~--~~~~l~~~~~~l~~~~  239 (246)
                       ++++|+|+..  +.++++++++.|++++
T Consensus       410 -~~~lRis~~~~~t~edi~~~~~~l~~~l  437 (438)
T 1wyu_A          410 -ENLALFAATELHEEEDLLALREALKEVL  437 (438)
T ss_dssp             -SSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred             -CCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence             7899999993  8899999999988764

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=99.67  E-value=6e-16  Score=133.10  Aligned_cols=197  Identities=10%  Similarity=0.024  Sum_probs=117.1

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCC-cccCCCCCccccccCCcccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGH-LAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~-~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      ++++| ||||.+++   +++|.++|++||+++|+||+|+. +.+.+. ..+....+.   -+++.|++|.++ ++.++||
T Consensus       151 ~~~~~-n~~G~~~~---l~~I~~l~~~~~~~livDea~~~~~~f~~~-~~~~~~~g~---Di~~~S~~K~l~-~~~g~g~  221 (446)
T 2x3l_A          151 VLTYP-NYYGETFN---VEEVIKSLHQLNIPVLIDEAHGAHFGLQGF-PDSTLNYQA---DYVVQSFHKTLP-ALTMGSV  221 (446)
T ss_dssp             EEESS-CTTSCCCC---HHHHHHHHHHTTCCEEEECTTCTTTTSTTS-CCCGGGGTC---SEEEECHHHHSS-SCTTCEE
T ss_pred             EEECC-CCCeEecC---HHHHHHHHHhcCCeEEEcchhhhhhccCCC-CCChHHcCC---CEEEECCccccc-cccccEE
Confidence            66776 77999988   78999999999999999999996 334443 222222332   288999999532 3345799


Q ss_pred             EEeeCCCCCcchhhHHHHHHHHhh-h-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccC
Q 042445           91 LVTSDPNGILQDSGIVDSIKIFLN-I-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKK  168 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~~~-~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~  168 (246)
                      +++++.  ..   + ...+..... . .++++.....++..++........++..+..++.++.+.+.     ++.. ..
T Consensus       222 l~~~~~--~i---~-~~~~~~~~~~~~~~s~~~~~~aal~~a~~~l~~~g~~~~~~~~~~l~~~l~~~-----g~~~-~~  289 (446)
T 2x3l_A          222 LYIHKN--AP---Y-RENIIEYLSYFQTSSPSYLIMASLESAAQFYKTYDSTLFFAKRAQLIECLENK-----GFEM-LQ  289 (446)
T ss_dssp             EEEETT--CT---T-HHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-----TCEE-EE
T ss_pred             EEEcCC--cC---C-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHc-----CCEE-Cc
Confidence            999882  11   2 233433222 1 22344443333333332100000111333333334444333     5543 33


Q ss_pred             CCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEe-cCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHH
Q 042445          169 PEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVL-PGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       169 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~-pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~  242 (246)
                      +.++.++|+.++..      +..+ +.+.|.++||.+. +|     .+++|++++.  +++++ ++++.|.++++++
T Consensus       290 ~~~~~~l~i~~~~~------~~~~-l~~~L~~~GI~v~~~g-----~~~iRi~~~~~~t~e~i-~l~~aL~~~~~~~  353 (446)
T 2x3l_A          290 VDDPLKLLIKYEGF------TGHD-IQNWFMNAHIYLELAD-----DYQALAILPLWHHDDTY-LFDSLLRKIEDMI  353 (446)
T ss_dssp             CSSTTEEEEECTTS------CHHH-HHHHHHHTTEEESEEC-----SSCEEEECCCCCTTCCC-CHHHHHHHHHTCC
T ss_pred             CCCCeEEEEEeCCc------CHHH-HHHHHHHCCCEEEecC-----CCEEEEEeecCCCHHHH-HHHHHHHHHHHhh
Confidence            44556788877521      2444 4555667799987 44     3789999985  77888 9999998887654

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=99.65  E-value=9.6e-15  Score=127.81  Aligned_cols=212  Identities=12%  Similarity=0.055  Sum_probs=133.5

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCc-cccccCCcccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFV-SMGVFGSIVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~-~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      ++++|+||||.+.+   +++|.++|+++|+++++|++|+.+......+. .+..+.  ..-+++.|++|.+++| .++|+
T Consensus       264 v~~~~~n~tG~i~~---l~~I~~la~~~g~~l~vD~a~~~~~~~~~~~~~~~~g~~--~aD~v~~s~hK~l~~p-~g~G~  337 (515)
T 2jis_A          264 SATSGTTVLGAFDP---LEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGIQ--RADSVAWNPHKLLAAG-LQCSA  337 (515)
T ss_dssp             EEEBSCTTTCCBCC---HHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGG--GCSEEEECTTSTTCCC-SCCEE
T ss_pred             EEeCCCCCCCCccC---HHHHHHHHHHcCCeEEEehhhhhHHHhChhhHhhcCCCc--cCCEEEECcccccCCC-CCeeE
Confidence            78899999999876   88999999999999999999998876543222 122221  2237788999997655 57999


Q ss_pred             EEeeCCCCCcchhh--HHHHHHH----Hh-h--------hc---------CCCCchHHHHHHHHHhhchHHHHHHHHHHH
Q 042445           91 LVTSDPNGILQDSG--IVDSIKI----FL-N--------IS---------SDPATFIQGAVPQILEKTEEEFFSKIIDIL  146 (246)
Q Consensus        91 i~~~~~~~~~~~~~--~~~~l~~----~~-~--------~~---------~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~  146 (246)
                      +++.+        +  +++....    +. .        ..         .....+.+.++.+++.   ...+++..+..
T Consensus       338 l~~~~--------~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~lg---~~g~~~~~~~~  406 (515)
T 2jis_A          338 LLLQD--------TSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQG---DQGLERRIDQA  406 (515)
T ss_dssp             EEESC--------CSCHHHHHHCC---------CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred             EEEeC--------hHHHHHHHhcCCchhccCCcccccccCCCCCCCCCCCCcccHHHHHHHHHHHh---HHHHHHHHHHH
Confidence            99987        4  4443211    11 0        00         0111333444444443   34577788888


Q ss_pred             HHHHHHHHHHhhcCCCCccccCCCCceEEEEEeccccccCC--CCh-HH-------HHHHHHHhcCeEEecCCCc-CCCC
Q 042445          147 RETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGI--NSD-ME-------FALKLAKEESVIVLPGITV-GLKD  215 (246)
Q Consensus       147 ~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~-~~-------~~~~ll~~~gi~v~pg~~f-~~~~  215 (246)
                      .++++.+.+.|++++++..+.+|..+.+.+..++.. +++.  ..+ .+       .+...+.+.|+.+...... +..+
T Consensus       407 ~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~p~~-~~~~~~~~~~~~~l~~~~~~l~~~l~~~G~~~~~~~~~~~~~~  485 (515)
T 2jis_A          407 FVLARYLVEEMKKREGFELVMEPEFVNVCFWFVPPS-LRGKQESPDYHERLSKVAPVLKERMVKEGSMMIGYQPHGTRGN  485 (515)
T ss_dssp             HHHHHHHHHHHHTSTTEEESSCCSSSEEEEEECCGG-GTTCTTSTTHHHHHHTHHHHHHHHHHHHTSCEEEEEEETTEEE
T ss_pred             HHHHHHHHHHHhcCCCEEEeCCCCeeEEEEEEeCcc-ccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEECCceE
Confidence            999999999999988887544555555444322321 1110  001 11       1344566778655321111 1257


Q ss_pred             eEEEEee---cChHHHHHHHHHHHHHHHH
Q 042445          216 WLRITFA---VEPSALENGLGRMKAFYDR  241 (246)
Q Consensus       216 ~iRls~~---~~~~~l~~~~~~l~~~~~~  241 (246)
                      ++|++++   .++++++++++.|++++++
T Consensus       486 ~lRis~~~~~~t~edid~~~~~l~~~~~~  514 (515)
T 2jis_A          486 FFRVVVANSALTCADMDFLLNELERLGQD  514 (515)
T ss_dssp             EEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence            8999994   3899999999999887643

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=99.61  E-value=2.4e-14  Score=125.12  Aligned_cols=216  Identities=11%  Similarity=0.021  Sum_probs=133.5

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCc-cccccCCcccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFV-SMGVFGSIVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~-~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      +.++|+||||.+   +++++|.++|++||+++++|++|+........+. .+....  .--.++.+.+|.++.| ..+|+
T Consensus       253 v~~~~~~~~G~v---d~l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~~~~~g~~--~aDsv~~~~hK~l~~p-~g~g~  326 (511)
T 3vp6_A          253 NATAGTTVYGAF---DPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIE--RANSVTWNPHKMMGVL-LQCSA  326 (511)
T ss_dssp             EEEBSCSSSCCB---CCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGG--GCSEEEECTTSTTCCC-SCCEE
T ss_pred             EEecCCCCCccc---ccHHHHHHHHHHcCCEEEEEccchhhHhhChhhhhhccCCc--cCCEEEECcccccCCC-cCeEE
Confidence            788999999998   4599999999999999999999997665332221 111111  1125567899998766 67899


Q ss_pred             EEeeCCCCCcchhhHHHHHHHHh-hhcC------------------CCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 042445           91 LVTSDPNGILQDSGIVDSIKIFL-NISS------------------DPATFIQGAVPQILEKTEEEFFSKIIDILRETAD  151 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~~-~~~~------------------~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~  151 (246)
                      +++.+.       .++....... .+..                  ...+.....+..++.......+++..++..++++
T Consensus       327 l~~~~~-------~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~  399 (511)
T 3vp6_A          327 ILVKEK-------GILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAE  399 (511)
T ss_dssp             EEESST-------THHHHHHCCCCTTTCCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeCH-------HHHHHHhccCCccccCcccccccccCccCCCCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            988774       5555543211 1100                  0001122223333332245678888999999999


Q ss_pred             HHHHHhhcCCCCcccc--CCCCceEEEEEeccccccCCCCh----------HHHHHHHHHhcCeEEecCCCcCC-CCeEE
Q 042445          152 KCCDRLKEIPCITCPK--KPEGSMFVMVKLNYSLLEGINSD----------MEFALKLAKEESVIVLPGITVGL-KDWLR  218 (246)
Q Consensus       152 ~l~~~L~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~----------~~~~~~ll~~~gi~v~pg~~f~~-~~~iR  218 (246)
                      .+.+.|+++|++..+.  .|..+.+.| ++.+..+++..++          ...+.+.|.++|+.+........ .+++|
T Consensus       400 ~l~~~L~~~pg~~l~~~~~p~~~~v~f-~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lR  478 (511)
T 3vp6_A          400 YLYAKIKNREEFEMVFNGEPEHTNVCF-WYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFR  478 (511)
T ss_dssp             HHHHHHHSCTTEEESSSSCCSSSCEEE-EECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEEEETTEEEEEE
T ss_pred             HHHHHHhcCCCEEEEecCCCCeEEEEE-EEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEeCCceEEEE
Confidence            9999999988887544  466565444 3433222111000          12345566677765543111111 35799


Q ss_pred             EEee-c--ChHHHHHHHHHHHHHHHH
Q 042445          219 ITFA-V--EPSALENGLGRMKAFYDR  241 (246)
Q Consensus       219 ls~~-~--~~~~l~~~~~~l~~~~~~  241 (246)
                      +++. .  +.++++.+++.|++.-++
T Consensus       479 i~~~~~~~t~~di~~ll~~i~~~~~~  504 (511)
T 3vp6_A          479 MVISNPAATQSDIDFLIEEIERLGQD  504 (511)
T ss_dssp             ECCCCTTCCHHHHHHHHHHHHHHHC-
T ss_pred             EEecCCCCCHHHHHHHHHHHHHHHHh
Confidence            9995 2  788899999888876543

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=99.59  E-value=2e-14  Score=124.82  Aligned_cols=210  Identities=10%  Similarity=-0.019  Sum_probs=133.0

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCcc-ccccCCcccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVS-MGVFGSIVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~-~~~~~~~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      +.+.++|+||.+   +++++|.++|++||+++++|.+|+.+.+....+.. +..+.. .. .+..+.+|.++.| .-+|+
T Consensus       246 v~~~~~t~~G~i---d~l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~-aD-si~~~~hK~l~~p-~g~g~  319 (481)
T 4e1o_A          246 CATLGTTGVCAF---DCLSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEY-AD-SFTFNPSKWMMVH-FDCTG  319 (481)
T ss_dssp             EEEBSCTTTCCB---CCHHHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGG-CS-EEEECHHHHSSCC-SSCEE
T ss_pred             EEecCCCCCcCc---CCHHHHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCccc-CC-EEEEChHHhcCCC-CceEE
Confidence            677888999987   45999999999999999999999976543221211 111211 12 4556899997766 45677


Q ss_pred             EEeeCCCCCcchhhHHHHHHHH-hhhc---------------C----CCCchHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 042445           91 LVTSDPNGILQDSGIVDSIKIF-LNIS---------------S----DPATFIQGAVPQILEKTEEEFFSKIIDILRETA  150 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~-~~~~---------------~----~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~  150 (246)
                      +++.+.       ..+...... ..+.               .    ....+.+.++...+   ....+++..+...+++
T Consensus       320 l~~~~~-------~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~---g~~g~~~~~~~~~~~a  389 (481)
T 4e1o_A          320 FWVKDK-------YKLQQTFSVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSF---GVKNLQAHVRHGTEMA  389 (481)
T ss_dssp             EEESBH-------HHHHTTTCCCCGGGCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred             EEEeCH-------HHHHHHhcCCchhccCcccCCCCCcccccccCCCCccHHHHHHHHHHh---HHHHHHHHHHHHHHHH
Confidence            777662       333221111 0000               0    11233334443333   3456778888889999


Q ss_pred             HHHHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcC-eEEecCCCcCCCCeEEEEeec---ChH
Q 042445          151 DKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEES-VIVLPGITVGLKDWLRITFAV---EPS  226 (246)
Q Consensus       151 ~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~g-i~v~pg~~f~~~~~iRls~~~---~~~  226 (246)
                      +.+.+.|++++++.. ..+.....++++++....    .+.++... +.+.| +.+.|+. .....++|+++..   +++
T Consensus       390 ~~l~~~L~~~~g~~~-~~~~~~~~v~f~~~~~~~----~~~~l~~~-L~~~g~~~~~~~~-~~g~~~lR~~~~~~~tt~~  462 (481)
T 4e1o_A          390 KYFESLVRNDPSFEI-PAKRHLGLVVFRLKGPNS----LTENVLKE-IAKAGRLFLIPAT-IQDKLIIRFTVTSQFTTRD  462 (481)
T ss_dssp             HHHHHHHHTCTTEEC-CSCCCSSEEEEEESSCHH----HHHHHHHH-HHHHCSSBCEEEE-ETTEEEEEEECCCTTCCHH
T ss_pred             HHHHHHHhcCCCeEE-ecCCceeEEEEEeCCchH----HHHHHHHH-HHhCCeEEEEeeE-ECCEEEEEEEeCCCCCCHH
Confidence            999999999988884 344456667777753210    13444444 55556 5555433 2335789999873   689


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 042445          227 ALENGLGRMKAFYDRHAE  244 (246)
Q Consensus       227 ~l~~~~~~l~~~~~~~~~  244 (246)
                      ++++++++|+++.+++.+
T Consensus       463 di~~~~~~i~~~~~~l~~  480 (481)
T 4e1o_A          463 DILRDWNLIRDAATLILS  480 (481)
T ss_dssp             HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhh
Confidence            999999999999887653

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=99.59  E-value=3.4e-14  Score=122.53  Aligned_cols=204  Identities=13%  Similarity=0.079  Sum_probs=135.3

Q ss_pred             Ccc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCC
Q 042445           20 VGS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNG   98 (246)
Q Consensus        20 tG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~   98 (246)
                      .|+ .++++++++|.++|++||+++|.||+..+|...|..+ ....++-...   +-+++|.++..++.+|.+++++   
T Consensus       249 gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG~~f-a~e~~gv~PD---i~t~~K~l~gG~~Pl~av~~~~---  321 (473)
T 4e3q_A          249 GGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTW-GCVTYDFTPD---AIISSKNLTAGFFPMGAVILGP---  321 (473)
T ss_dssp             TTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTSSSC-HHHHTTCCCS---EEEECGGGGTTSSCCEEEEECH---
T ss_pred             CCceeCCHHHHHHHHHHhcccceEEeccCccccCCcccchh-HHHhcCCCCC---hHHhcccccCCCCCcccccccH---
Confidence            454 4567899999999999999999999999998776544 2222322222   4457799765559999999999   


Q ss_pred             CcchhhHHHHHHHH--------hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhh---cCCCCcccc
Q 042445           99 ILQDSGIVDSIKIF--------LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLK---EIPCITCPK  167 (246)
Q Consensus        99 ~~~~~~~~~~l~~~--------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~---~~~~~~~~~  167 (246)
                           ++.+.+...        +..+++.||++.+++.+.|+...++.   ..+..++.-+++.+.|+   +.+.+.. +
T Consensus       322 -----~i~~~~~~~~~~~~~~~hg~T~~Gnpla~Aaala~L~~i~~~~---l~~~~~~~g~~l~~~L~~l~~~~~v~~-v  392 (473)
T 4e3q_A          322 -----ELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMNEG---LAENVRRLAPRFEERLKHIAERPNIGE-Y  392 (473)
T ss_dssp             -----HHHHHHHHHHHHHSCCCCCCTTTTCHHHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHTTSTTEEE-E
T ss_pred             -----HHHHHhccccccccccccCCCCCCCcchhhhhhhhhhhhcccc---HHHHHHHHHHHHHHHHHHHhcCCCeeE-E
Confidence                 888887643        23455889999999999888533221   22222333344444443   3344432 2


Q ss_pred             CCCCceEEEEEeccccc-----cCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHHHH
Q 042445          168 KPEGSMFVMVKLNYSLL-----EGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAFYD  240 (246)
Q Consensus       168 ~~~~g~~~~~~~~~~~~-----~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~~  240 (246)
                      . .-|+++-+++.....     +........+...+.++|+++.|..     +.+||+..  .+++++++++++|.++++
T Consensus       393 R-G~Gl~~gielv~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~g-----~~i~l~PPL~it~~eid~~~~~l~~al~  466 (473)
T 4e3q_A          393 R-GIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTDLGLICRPLG-----QSVVLCPPFILTEAQMDEMFDKLEKALD  466 (473)
T ss_dssp             E-EETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEEET-----TEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             e-ecceEEEEEEecCccccccccccHHHHHHHHHHHHHCCcEEEecC-----CEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence            2 235666666633210     0001224456677889999998743     67898866  399999999999999998


Q ss_pred             HHhhc
Q 042445          241 RHAEK  245 (246)
Q Consensus       241 ~~~~~  245 (246)
                      +..++
T Consensus       467 ~v~ae  471 (473)
T 4e3q_A          467 KVFAE  471 (473)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87643

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=99.59  E-value=2.5e-14  Score=123.94  Aligned_cols=213  Identities=13%  Similarity=0.060  Sum_probs=132.5

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCcc-ccccCCcccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVS-MGVFGSIVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~-~~~~~~~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      +.+.++|+||.+-   ++++|.++|++||+++++|++|+........+.. +..+..  --.+..+++|.++.| ..+|+
T Consensus       239 ~~~~~~t~~G~~~---~l~~I~~la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~--~Ds~~~~~hK~l~~p-~g~g~  312 (475)
T 3k40_A          239 VVTLGTTNSCAFD---YLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIES--ADSFNFNPHKWMLVN-FDCSA  312 (475)
T ss_dssp             EEEBSCTTTCCBC---CHHHHHHHHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGGG--CSEEEECHHHHSSCC-SSCEE
T ss_pred             EEEecCCCCcCcC---CHHHHHHHHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCccc--CCEEEECchhccCCC-CceEE
Confidence            6678889999984   5999999999999999999999875432211111 112211  125667899986554 45788


Q ss_pred             EEeeCCCCCcchhhHH-HHHHH---Hh------------hhcCCC----CchHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 042445           91 LVTSDPNGILQDSGIV-DSIKI---FL------------NISSDP----ATFIQGAVPQILEKTEEEFFSKIIDILRETA  150 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~-~~l~~---~~------------~~~~~~----~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~  150 (246)
                      +++.+.       ..+ +.+..   +.            ..+...    ..+.+.++...+   ....+++..+...+++
T Consensus       313 l~~~~~-------~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~---g~~g~~~~~~~~~~~a  382 (475)
T 3k40_A          313 MWLKDP-------SWVVNAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLY---GVENLQAHIRRHCNFA  382 (475)
T ss_dssp             EEESSG-------GGC---------------------------CCCGGGTHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred             EEEeCH-------HHHHHHhcCCccccCCCcCCCCCCcccccccCCCcccHHHHHHHHHHH---hHHHHHHHHHHHHHHH
Confidence            888763       221 11111   00            000001    122333333333   3456778888899999


Q ss_pred             HHHHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec---ChHH
Q 042445          151 DKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV---EPSA  227 (246)
Q Consensus       151 ~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~---~~~~  227 (246)
                      +.+.+.|++++++..+. +.....++++++....    ...++..++.++.++.+.|+... ...++|+++..   ++++
T Consensus       383 ~~l~~~L~~~~g~~l~~-~~~~~iv~f~~~~~~~----~~~~l~~~L~~~g~~~~~~~~~~-g~~~lR~~~~~~~tt~~d  456 (475)
T 3k40_A          383 KQFGDLCVADSRFELAA-EINMGLVCFRLKGSNE----RNEALLKRINGRGHIHLVPAKIK-DVYFLRMAICSRFTQSED  456 (475)
T ss_dssp             HHHHHHHHHSTTEEESS-CCBTTEEEEEESSCHH----HHHHHHHHHHHHTSCBCEEEEET-TEEEEEEECCCTTCCHHH
T ss_pred             HHHHHHHhcCCCEEEec-CCceEEEEEEeCCchH----HHHHHHHHHHhCCcEEEEeeEEC-CEEEEEEEeCCCCCCHHH
Confidence            99999999998888543 4445566666653210    13445555444444455554333 36789999873   7899


Q ss_pred             HHHHHHHHHHHHHHHhhcC
Q 042445          228 LENGLGRMKAFYDRHAEKQ  246 (246)
Q Consensus       228 l~~~~~~l~~~~~~~~~~~  246 (246)
                      +++++++|+++.+++.+.|
T Consensus       457 i~~~~~~i~~~~~~~~~~~  475 (475)
T 3k40_A          457 MEYSWKEVSAAADEMEQEQ  475 (475)
T ss_dssp             HHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHHhccC
Confidence            9999999999998876543

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=99.59  E-value=5.5e-14  Score=118.85  Aligned_cols=199  Identities=11%  Similarity=0.097  Sum_probs=120.7

Q ss_pred             CCCccCCChhhHHHHHHHHHHcCCEEEEccccC-CcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCC
Q 042445           18 FHVGSGFSGSFVSPIAETAKKLGIMVIANEVYG-HLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDP   96 (246)
Q Consensus        18 NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~   96 (246)
                      ||||..   .++++|.++|+++|+++|+||+|+ ++.+.+....+   +.   + +.+.|+||..+++|.|+||+++++.
T Consensus       130 ~~~G~~---~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~---~~---~-~~~~s~s~~K~l~~~~~G~~~~~~~  199 (394)
T 1o69_A          130 HLYGNA---AKMDEIVEICKENDIVLIEDAAEALGSFYKNKALGT---FG---E-FGVYSYNGNKIITTSGGGMLIGKNK  199 (394)
T ss_dssp             CGGGCC---CCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTS---SS---S-EEEEECCTTSSSCCSSCEEEEESCH
T ss_pred             CCCCCh---hhHHHHHHHHHHcCCEEEEECcCcccceeCCccccc---cc---C-cEEEEEeCCccCCCCCceEEEECCH
Confidence            489964   569999999999999999999999 55554321111   11   1 4555664443455678999999632


Q ss_pred             CCCcchhhHHHHHHHHhhhcC-C--------------CCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 042445           97 NGILQDSGIVDSIKIFLNISS-D--------------PATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIP  161 (246)
Q Consensus        97 ~~~~~~~~~~~~l~~~~~~~~-~--------------~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  161 (246)
                             ++++.++.....+. .              .+++...++...     ..++++..+..+++++.+.+.|+++ 
T Consensus       200 -------~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~-----l~~l~~~~~~~~~~~~~l~~~L~~~-  266 (394)
T 1o69_A          200 -------EKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQ-----MEVLEQRVLKKREIYEWYKEFLGEY-  266 (394)
T ss_dssp             -------HHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHH-----HTTHHHHHHHHHHHHHHHHHHHTTT-
T ss_pred             -------HHHHHHHHHHHhccccCccccccccCcccCcCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhccc-
Confidence                   78888876533221 1              122222222111     2346667788888999999999876 


Q ss_pred             CCccccCCC----Cce-EEEEEecccc-------------ccC--CCChHHHHHHHHHhcCeEEecCCCcC--C---C--
Q 042445          162 CITCPKKPE----GSM-FVMVKLNYSL-------------LEG--INSDMEFALKLAKEESVIVLPGITVG--L---K--  214 (246)
Q Consensus       162 ~~~~~~~~~----~g~-~~~~~~~~~~-------------~~~--~~~~~~~~~~ll~~~gi~v~pg~~f~--~---~--  214 (246)
                       +.. ..+.    +++ .+++.++...             ..+  ..-+.+.+.+.|.++||.+++|..+.  .   .  
T Consensus       267 -~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~  344 (394)
T 1o69_A          267 -FSF-LDELENSRSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGA  344 (394)
T ss_dssp             -EEC-CCCCTTEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTC
T ss_pred             -ccc-cCCCCCCcceeEEEEEEecchhhccccccccccccccccccccCHHHHHHHHHHcCCcccccCCccccchhhhcc
Confidence             432 2221    233 3666676320             000  00034556667788999999985331  0   1  


Q ss_pred             -------------CeEEEEee--cChHHHHHHHHHHHHHHHH
Q 042445          215 -------------DWLRITFA--VEPSALENGLGRMKAFYDR  241 (246)
Q Consensus       215 -------------~~iRls~~--~~~~~l~~~~~~l~~~~~~  241 (246)
                                   +.+|+...  .++++++.+++.|+++++.
T Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~t~edi~~~~~~l~~~~~~  386 (394)
T 1o69_A          345 KAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKSIKA  386 (394)
T ss_dssp             EEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHC-
T ss_pred             CCCCChHHHHHhcCeEEccCCCCCCHHHHHHHHHHHHHHHhc
Confidence                         33444444  2889999999999887653

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=99.58  E-value=1.5e-13  Score=124.16  Aligned_cols=218  Identities=11%  Similarity=0.066  Sum_probs=128.7

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCc-ccCCCC--Cccccc--cCC-cccEEEEcccccccccCC
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHL-AFGNTP--FVSMGV--FGS-IVPLLTLGSISKRGIVPG   85 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~-~~~~~~--~~~~~~--~~~-~~~~i~~~s~sK~~~~~g   85 (246)
                      ++++| ||+|.+.+   +++|.++|+++|+++++||+|..+ .+++..  ..++..  ++. ..+++++.|++|.++  |
T Consensus       286 iv~~p-n~~G~v~d---l~~I~~la~~~g~~livDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~--g  359 (730)
T 1c4k_A          286 VIQLG-TYDGTIYN---AHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQA--G  359 (730)
T ss_dssp             EEESB-CTTSEEEC---HHHHHHHHGGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSS--C
T ss_pred             EEECC-CCCCeecC---HHHHHHHHHHcCCeEEEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCCC--C
Confidence            78889 79999976   889999999999999999999853 343211  112211  122 336799999999854  4


Q ss_pred             ceE-EEEEeeCCC-----CCcchhhHHHHHHHHhh--hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh
Q 042445           86 LRL-GWLVTSDPN-----GILQDSGIVDSIKIFLN--ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRL  157 (246)
Q Consensus        86 ~r~-G~i~~~~~~-----~~~~~~~~~~~l~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L  157 (246)
                      .+. |++++++..     ...   + ...+.....  .+++++....+++..++.........+..+.+.++.+.+++.|
T Consensus       360 ~~~gg~I~v~~~~l~g~~~~i---~-~~~~~~~~~~~~stsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L  435 (730)
T 1c4k_A          360 FSQTSQIHKKDSHIKGQLRYC---D-HKHFNNSFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKL  435 (730)
T ss_dssp             CTTCEEEEEECGGGTTSTTCC---C-HHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEecchhhcCccccc---C-HHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence            444 556555420     001   0 123333322  1225555555554444442122233445566777778888888


Q ss_pred             hc-CCCCccccCCC------------------------------------Cc-eE-----EEEEecc-----ccccCCCC
Q 042445          158 KE-IPCITCPKKPE------------------------------------GS-MF-----VMVKLNY-----SLLEGINS  189 (246)
Q Consensus       158 ~~-~~~~~~~~~~~------------------------------------~g-~~-----~~~~~~~-----~~~~~~~~  189 (246)
                      ++ ++|+..+.+..                                    .+ ++     +.+.++.     ..+.+..-
T Consensus       436 ~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~  515 (730)
T 1c4k_A          436 IKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGV  515 (730)
T ss_dssp             HHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCC
T ss_pred             hhhCCCeEEccccccccccccccccccccccchhhccCccchhccccccCCcccccCCeEEEEEeCCcccccccccccCC
Confidence            77 66765322110                                    12 22     3444421     00001011


Q ss_pred             hHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHHh
Q 042445          190 DMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       190 ~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~~  243 (246)
                      +...+.+.|.++||.+.+..    .+.+|++++.  +.++++.+++.|.++.+++.
T Consensus       516 ~~~~l~~~L~e~GI~v~~~~----~~~ir~~~s~g~t~e~i~~Ll~aL~~i~~~~~  567 (730)
T 1c4k_A          516 PATIVANYLRDHGIIPEKSD----LNSILFLMTPAETPAKMNNLITQLLQLQRLIE  567 (730)
T ss_dssp             CHHHHHHHHHHTTCCCSEEC----SSEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHCCcEEEECC----CCeEEEEeCCCCCHHHHHHHHHHHHHHHHhcc
Confidence            44555667778899876532    5789999885  78899999999998876653

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=99.56  E-value=7.2e-14  Score=120.03  Aligned_cols=206  Identities=17%  Similarity=0.149  Sum_probs=132.9

Q ss_pred             Ccc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCC
Q 042445           20 VGS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNG   98 (246)
Q Consensus        20 tG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~   98 (246)
                      .|. .++++++++|.++|++||+++|.||+..++...|..+ ....++-...   +-+++|.+ ..|+.+|.+++.+   
T Consensus       239 gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~-a~e~~gv~PD---ivt~gK~l-ggg~P~~av~~~~---  310 (456)
T 4atq_A          239 GGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWF-AVDHEGVVPD---IITMAKGI-AGGLPLSAITGRA---  310 (456)
T ss_dssp             TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-GGGGTTCCCS---EEEECGGG-GTTSSCEEEEEEH---
T ss_pred             CCccccchhhhHHHHHHHhhcCCceEecccccccCCccccc-cccccCCCCc---hhhhhhcc-cCcCCceeeEecH---
Confidence            344 5667899999999999999999999999987776543 3333332223   44567995 5789999999998   


Q ss_pred             CcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHH-HHHHHHHHHHHHHHHHHHHhhcCC-----CCccccCCCC
Q 042445           99 ILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEE-FFSKIIDILRETADKCCDRLKEIP-----CITCPKKPEG  171 (246)
Q Consensus        99 ~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~-----~~~~~~~~~~  171 (246)
                           ++.+.+... +..+++.||++.+++.+.|+...++ .+++.++.-....+.+.+..++++     -+.. +. .-
T Consensus       311 -----~i~~~~~~~~~~~Tf~gnpla~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~-VR-G~  383 (456)
T 4atq_A          311 -----DLLDAVHPGGLGGTYGGNPVACAAALAAIDTMEQHDLNGRARHIEELALGKLRELAAELSAGGGSVVGD-IR-GR  383 (456)
T ss_dssp             -----HHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCC-----CEEE-EE-EE
T ss_pred             -----HHHhcccccCCCCCCCCChHHHHhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhcccccCCceEE-ee-ec
Confidence                 888777544 4456688999999999999854322 222222221112222222222232     1111 11 23


Q ss_pred             ceEEEEEeccccccCC-CChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHH
Q 042445          172 SMFVMVKLNYSLLEGI-NSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       172 g~~~~~~~~~~~~~~~-~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~  242 (246)
                      |+++-+++....-... .+-...+...+.++|+++.++...  .+.|||+...  +++++++++++|.++++.+
T Consensus       384 Gl~~giel~~~~~~~~~~~~~~~v~~~~~~~Gvl~~~~g~~--~~~irl~PpL~it~~~id~~l~~l~~al~a~  455 (456)
T 4atq_A          384 GAMLAIELVQPGSKEPNAELTKAVAAACLKEGVIILTCGTY--GNVIRLLPPLVISDELLIDGLEVLAAAIKAH  455 (456)
T ss_dssp             TTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECEEECTT--SCEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             ceEEEEEEecCCCCCcCHHHHHHHHHHHHHCCCEEEecCCC--CCEEEEECCCCCCHHHHHHHHHHHHHHHHhh
Confidence            6777777753321000 012334566677899998874322  5789999774  8999999999999999864

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=99.54  E-value=1.7e-15  Score=138.64  Aligned_cols=206  Identities=13%  Similarity=0.100  Sum_probs=135.4

Q ss_pred             cCCCccC-CChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCC-ceEEEEEee
Q 042445           17 VFHVGSG-FSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPG-LRLGWLVTS   94 (246)
Q Consensus        17 ~NPtG~~-~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g-~r~G~i~~~   94 (246)
                      .+..|.. ++++++++|.++|++||+++|+||++.++...|..+ ....++-...   +.++||.++. | +++|+++++
T Consensus       605 qg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~f-a~e~~gv~PD---iitlsK~L~g-G~~Plgav~~~  679 (831)
T 4a0g_A          605 HGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVET-TTELLGCKPD---IACFAKLLTG-GMVPLAVTLAT  679 (831)
T ss_dssp             ETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSS-THHHHSSCCS---EEEECGGGGT-TSSCCEEEEEC
T ss_pred             ccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCch-hhHhcCCCCc---EEEEeccccc-CccCcEEEEEC
Confidence            3666665 478899999999999999999999999988777544 3323332223   3379999765 6 899999999


Q ss_pred             CCCCCcchhhHHHHHHHH-------hhhcCCCCchHHHHHHHHHhhchH-HHHHHHH---HHHHH-HHHHHHHHhhcCCC
Q 042445           95 DPNGILQDSGIVDSIKIF-------LNISSDPATFIQGAVPQILEKTEE-EFFSKII---DILRE-TADKCCDRLKEIPC  162 (246)
Q Consensus        95 ~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~---~~~~~-~~~~l~~~L~~~~~  162 (246)
                      +        ++++.+...       ...+++.||++++++.+.|+...+ ...++..   +.+++ ..+.+.+.+++.+.
T Consensus       680 ~--------~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~l~~~l~~~l~~~l~~~~~  751 (831)
T 4a0g_A          680 D--------AVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNITSQGKTLRELWDEELVQQISSHSA  751 (831)
T ss_dssp             H--------HHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSBBCCCSCHHHHHHHHHSTT
T ss_pred             H--------HHHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence            8        888877542       234568899999999998874211 1111111   11111 01234455666665


Q ss_pred             CccccCCCCceEEEEEeccccc-cCC-CChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHH
Q 042445          163 ITCPKKPEGSMFVMVKLNYSLL-EGI-NSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAF  238 (246)
Q Consensus       163 ~~~~~~~~~g~~~~~~~~~~~~-~~~-~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~  238 (246)
                      +.. +. .-|+++.+++....- .+. ......+...+.++||.++|+     .+.+||+..  .+++++++++++|.++
T Consensus       752 v~~-vr-g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gv~v~p~-----g~~lrl~pp~~~t~e~id~~~~~l~~~  824 (831)
T 4a0g_A          752 VQR-VV-VIGTLFALELKADASNSGYASLYAKSLLIMLREDGIFTRPL-----GNVIYLMCGPCTSPEICRRLLTKLYKR  824 (831)
T ss_dssp             EEE-EE-EETTEEEEEEC---------CHHHHHHHHHHHHTTEECCCB-----TTEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred             cee-Ee-ecccEEEEEEecCccccccchHHHHHHHHHHHHCCcEEEec-----CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            542 23 346667677743210 000 012344566677899999875     378999965  4999999999999999


Q ss_pred             HHHH
Q 042445          239 YDRH  242 (246)
Q Consensus       239 ~~~~  242 (246)
                      ++++
T Consensus       825 l~~l  828 (831)
T 4a0g_A          825 LGEF  828 (831)
T ss_dssp             HTTT
T ss_pred             HHHh
Confidence            8765

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=99.54  E-value=1.4e-13  Score=117.59  Aligned_cols=159  Identities=14%  Similarity=0.148  Sum_probs=105.5

Q ss_pred             hhhhhhhccc----ccc-CCcCCCccCCChhhHHHHHHHHHH--cCCEEEEccccCCcccCCCCCccccccCCcccEEEE
Q 042445            2 ELINQDITRE----FSD-FQVFHVGSGFSGSFVSPIAETAKK--LGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTL   74 (246)
Q Consensus         2 e~~~~~~~~~----~~~-~p~NPtG~~~~~~~~~~l~~~~~~--~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~   74 (246)
                      |.+++.++++    +++ +||||+|.+.+.+++++|+++|++  +|+++|+||+|+.+.++..+.    .++   ..+++
T Consensus       156 e~l~~~l~~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~~~----~~g---~Di~~  228 (431)
T 3ht4_A          156 EAVAAAIHSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEPC----HVG---ADLMA  228 (431)
T ss_dssp             HHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCCGG----GTT---CSEEE
T ss_pred             HHHHhhcCCCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCCcc----ccC---CeEEE
Confidence            4455556544    444 699999999999999999999999  999999999999887654321    111   23899


Q ss_pred             ccccccccc-CCceEEEEEeeCCCCCcchhhHHHHHHHHhhh---cC--CCCchHHHHHHHHHhhchHHHHHHHHHHHHH
Q 042445           75 GSISKRGIV-PGLRLGWLVTSDPNGILQDSGIVDSIKIFLNI---SS--DPATFIQGAVPQILEKTEEEFFSKIIDILRE  148 (246)
Q Consensus        75 ~s~sK~~~~-~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~---~~--~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~  148 (246)
                      +|+||.+++ .+...||+++++        ++++.++.....   +.  +.+.....++...+.     .+....+...+
T Consensus       229 ~S~sK~lgg~~~~~GG~v~~~~--------~li~~l~~~~~~~~~g~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~  295 (431)
T 3ht4_A          229 GSLIKNPGGGIVKTGGYIVGKE--------QYVEACAYRLTSPGIGAEAGASLYSLQEMYQGFF-----LAPHVAGQALK  295 (431)
T ss_dssp             EETTSGGGTTTCSSCEEEEECH--------HHHHHHHHHHSCTTTTTSCSCCCSCSHHHHHHHH-----HHHHHHHHHHH
T ss_pred             cCccccCCCCCCCceEEEEecH--------HHHHHHHHHhccCCcccccCccHHHHHHHHhHhh-----hHHHHHHHHHH
Confidence            999999654 223339999988        999988775321   11  122222333333333     24556677788


Q ss_pred             HHHHHHHHhhcCCCCccc---cCCCCceEEEEEecc
Q 042445          149 TADKCCDRLKEIPCITCP---KKPEGSMFVMVKLNY  181 (246)
Q Consensus       149 ~~~~l~~~L~~~~~~~~~---~~~~~g~~~~~~~~~  181 (246)
                      +++.+.+.|+++ ++..+   ..+..+..+.+.++.
T Consensus       296 ~a~~l~~~L~~~-g~~v~p~~~~~~~~li~~i~l~~  330 (431)
T 3ht4_A          296 GAIFTAAFLEKL-GMNTSPAWNAPRTDLIQSVQFDD  330 (431)
T ss_dssp             HHHHHHHHHHHH-TCCEESCTTSCCSSSCCEEECCC
T ss_pred             HHHHHHHHHHhC-cCEecCCCCCCCccEEEEEEeCC
Confidence            888999999886 33321   112334456666653

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=99.53  E-value=1.5e-13  Score=117.23  Aligned_cols=154  Identities=16%  Similarity=0.078  Sum_probs=103.8

Q ss_pred             hhhhhhhc--cc----cccC----CcCCCccCCChhhHHHHHHHHHH--cCCEEEEccccCCcccCCCCCccccccCCcc
Q 042445            2 ELINQDIT--RE----FSDF----QVFHVGSGFSGSFVSPIAETAKK--LGIMVIANEVYGHLAFGNTPFVSMGVFGSIV   69 (246)
Q Consensus         2 e~~~~~~~--~~----~~~~----p~NPtG~~~~~~~~~~l~~~~~~--~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~   69 (246)
                      |.+++.++  ++    ++++    |+||||.+   .++++|+++|++  +|+++++|++|..+.+...+.    ..   +
T Consensus       165 e~l~~~l~~~~~tklV~i~~s~~~p~nptg~i---~dl~~i~~la~~~~~g~~livD~a~~~~~~~~~p~----~~---g  234 (427)
T 3i16_A          165 EEIEKVLKEDESITLVHIQRSTGYGWRRALLI---EDIKSIVDCVKNIRKDIICFVDNCYGEFMDTKEPT----DV---G  234 (427)
T ss_dssp             HHHHHHHHTCTTEEEEEEECSCCSSSSCCCCH---HHHHHHHHHHHHHCTTSEEEEECTTTTTSSSSCGG----GG---T
T ss_pred             HHHHHHhhCCCCCEEEEEEcCCCCCCCCcccH---HHHHHHHHHHHHhCCCCEEEEECCCccccccCCcc----cc---C
Confidence            45556665  33    5666    88898865   679999999999  999999999999876433221    11   2


Q ss_pred             cEEEEcccccccccCC-ceEEEEEeeCCCCCcchhhHHHHHHHHhh---hcCCCCc-hH-HHHHHHHHhhchHHHHHHHH
Q 042445           70 PLLTLGSISKRGIVPG-LRLGWLVTSDPNGILQDSGIVDSIKIFLN---ISSDPAT-FI-QGAVPQILEKTEEEFFSKII  143 (246)
Q Consensus        70 ~~i~~~s~sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~-~~-q~~~~~~l~~~~~~~~~~~~  143 (246)
                      ..++++|+||.++++| .+.||+++++        +++++++....   ....+++ +. ...+.+.+     ..+..+.
T Consensus       235 aDiv~~S~sK~lgg~g~~~gG~i~~~~--------~li~~l~~~~~~~~~g~~~~~~~~~a~~~l~gl-----~~~~~r~  301 (427)
T 3i16_A          235 ADLIAGSLIKNIGGGIAPTGGYLAGTK--------DCIEKTSYRLTVPGIGGECGSTFGVVRSMYQGL-----FLAPHIS  301 (427)
T ss_dssp             CSEEEEETTSGGGTTTCCSCEEEEECH--------HHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHH-----HHHHHHH
T ss_pred             CeEEEecCcccCCCCCCceEEEEEECH--------HHHHHHHHhcccCccCccCCccHHHHHHHHHHH-----HHHHHHH
Confidence            3389999999998877 6779999988        99999987422   2212233 22 22232333     3356677


Q ss_pred             HHHHHHHHHHHHHhhcCCCCccccCCCCce-----EEEEEecc
Q 042445          144 DILRETADKCCDRLKEIPCITCPKKPEGSM-----FVMVKLNY  181 (246)
Q Consensus       144 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~-----~~~~~~~~  181 (246)
                      +...+++..+.+.|++++ +.+  .|..+.     .+.+.+..
T Consensus       302 ~~~~~~a~~la~~L~~~g-~~V--~p~~~~~~~~~i~~i~l~~  341 (427)
T 3i16_A          302 MEALKGAILCSRIMELAG-FEV--MPKYDEKRSDIIQSIKFND  341 (427)
T ss_dssp             HHHHHHHHHHHHHHHHTT-CEE--ESCTTSCCSSSCEEEECSS
T ss_pred             HHHHHHHHHHHHHHHhCC-Cee--cCCCCCCCccEEEEEEECC
Confidence            788899999999999884 442  333333     66666653

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=99.53  E-value=1.4e-13  Score=116.83  Aligned_cols=139  Identities=14%  Similarity=0.038  Sum_probs=96.6

Q ss_pred             hhhhhhhccc----cccC----CcCCCccCCChhhHHHHHHHHHH--cCCEEEEccccCCcccCCCCCccccccCCcccE
Q 042445            2 ELINQDITRE----FSDF----QVFHVGSGFSGSFVSPIAETAKK--LGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPL   71 (246)
Q Consensus         2 e~~~~~~~~~----~~~~----p~NPtG~~~~~~~~~~l~~~~~~--~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~   71 (246)
                      |.+++.++++    ++++    |+||||.+   .++++|+++|++  +|+++++|++|..+.+...+.    ..   +..
T Consensus       150 e~l~~ai~~~tklV~i~~s~g~p~nptg~v---~~l~~I~~la~~~~~~~~livD~a~~~~~~~~~p~----~~---g~D  219 (409)
T 3jzl_A          150 PRIAKKMTPKTKMIGIQRSRGYADRPSFTI---EKIKEMIVFVKNINPEVIVFVDNCYGEFVEYQEPP----EV---GAD  219 (409)
T ss_dssp             HHHHHHCCTTEEEEEEECSCTTSSSCCCCH---HHHHHHHHHHHHHCTTCEEEEECTTCTTTSSCCSG----GG---TCS
T ss_pred             HHHHHhccCCCeEEEEECCCCCCCCCcCcc---ccHHHHHHHHHhhCCCCEEEEeCCcccccccCCcc----cc---CCe
Confidence            4556666544    6666    99999876   569999999999  999999999999876433221    11   234


Q ss_pred             EEEcccccccccCC-ceEEEEEeeCCCCCcchhhHHHHHHHHhh---h--cCCCCchHHHHHHHHHhhchHHHHHHHHHH
Q 042445           72 LTLGSISKRGIVPG-LRLGWLVTSDPNGILQDSGIVDSIKIFLN---I--SSDPATFIQGAVPQILEKTEEEFFSKIIDI  145 (246)
Q Consensus        72 i~~~s~sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~l~~~~~---~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~  145 (246)
                      ++++|+||.++++| .+.||+++++        ++++.++....   .  ..+.......++.+.+.     .+..++++
T Consensus       220 iv~~S~sK~lgg~~~~~GG~v~~~~--------~li~~l~~~~~~~~~g~~~g~~~~~~~~~l~gl~-----~~~~r~~~  286 (409)
T 3jzl_A          220 IIAGSLIKNPGGGLAKTGGYIAGKE--------ALVDLCGYRLTTPGIGREAGASLYSLLEMYQGFF-----LAPHVTAQ  286 (409)
T ss_dssp             EEEEETTSGGGTTTCSSCEEEEECH--------HHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHH-----HHHHHHHH
T ss_pred             EEEECccccCCccCCceEEEEEeCH--------HHHHHHHHHhccccccccccccHHHHHHHHHHHh-----hHHHHHHH
Confidence            89999999998776 4469999987        99999887432   1  11222222333333333     35566777


Q ss_pred             HHHHHHHHHHHhhcCCCCc
Q 042445          146 LRETADKCCDRLKEIPCIT  164 (246)
Q Consensus       146 ~~~~~~~l~~~L~~~~~~~  164 (246)
                      ..+++..+.+.|+++ |+.
T Consensus       287 ~~~~a~~la~~L~~~-g~~  304 (409)
T 3jzl_A          287 AIKGARFTAAMLAEF-GVE  304 (409)
T ss_dssp             HHHHHHHHHHHHHHT-TCE
T ss_pred             HHHHHHHHHHHHHhC-CCc
Confidence            888999999999988 444

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=99.51  E-value=3.2e-13  Score=113.64  Aligned_cols=196  Identities=11%  Similarity=0.053  Sum_probs=123.1

Q ss_pred             CcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCccc-CCCCCccc-cccCCcccEEEEccc--ccccccCCceEEEE
Q 042445           16 QVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAF-GNTPFVSM-GVFGSIVPLLTLGSI--SKRGIVPGLRLGWL   91 (246)
Q Consensus        16 p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~-~~~~~~~~-~~~~~~~~~i~~~s~--sK~~~~~g~r~G~i   91 (246)
                      |+||+|...+   +++|.++|+ +|+++|+|++|+.+.. .+.   .+ ..+.  +  +.+.||  +|.+++ | +.|++
T Consensus       135 ~~~~~G~~~~---~~~i~~la~-~~~~vi~D~a~a~g~~~~~~---~~g~~~~--d--~~~~S~~~~K~l~~-g-~gG~~  201 (377)
T 3ju7_A          135 PYATFGSWMN---LEEYEELEK-KGVPVVVDAAPGFGLMNGGM---HYGQDFS--G--MIIYSFHATKPFGI-G-EGGLI  201 (377)
T ss_dssp             CBCGGGBCCC---CHHHHHHHH-TTCCBEEECTTCTTCEETTE---ETTTTCS--S--EEEEECBTTSSSCC-B-SCEEE
T ss_pred             EECCCCCccC---HHHHHHHHh-cCCEEEEECCCccCCeECCE---eccCCCC--c--EEEEECCCCCcCCC-C-CcEEE
Confidence            7799999876   678888889 9999999999986542 221   11 0111  1  445554  699875 4 67888


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhhh-------------cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhh
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLNI-------------SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLK  158 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~  158 (246)
                      ++++.       ++.++++.....             .+.++.+..+++...+.     .++...++.+++++.+.+.|+
T Consensus       202 ~~~~~-------~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~-----~l~~~~~~~~~~~~~~~~~L~  269 (377)
T 3ju7_A          202 YSKNE-------EDIQRIKRMGNFGFDTNRECTMMGFNCKMSEYAAAIGIATMK-----KWDDKLKERTRISEWYKQLLQ  269 (377)
T ss_dssp             EESCH-------HHHHHHHHHTBTTBCTTSCBCSSCCBCCCCHHHHHHHHHHHH-----THHHHHHHHHHHHHHHHHHHH
T ss_pred             EECCH-------HHHHHHHHHHhcCCCCCCceeeccccCCCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhc
Confidence            88763       777777765431             23455665555544444     355566666777778888888


Q ss_pred             cCCCCccccCCCCc-----eEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCC--cC------------C------
Q 042445          159 EIPCITCPKKPEGS-----MFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGIT--VG------------L------  213 (246)
Q Consensus       159 ~~~~~~~~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~--f~------------~------  213 (246)
                      +++++.....+..+     .|+.+.++..      .+.+.+.+.|.++||.+..++.  +.            .      
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  343 (377)
T 3ju7_A          270 SNGLMKKGWQLQKTEAVIQQFMPILCPEE------VRNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKI  343 (377)
T ss_dssp             HTTTTTTTCBCCCCSCBCCSSEEEECCTT------SCHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHH
T ss_pred             CCCCccccccCCCCCcceEEEEEEEeCCh------hhHHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHH
Confidence            77654211222221     2334444432      1356667788899999987652  11            0      


Q ss_pred             -CCeEEEEeec--ChHHHHHHHHHHHHHHHHH
Q 042445          214 -KDWLRITFAV--EPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       214 -~~~iRls~~~--~~~~l~~~~~~l~~~~~~~  242 (246)
                       .+.+|+.+..  ++++++..++.|.+++...
T Consensus       344 ~~~~l~lp~~~~~t~~di~~v~~~l~~~~~~~  375 (377)
T 3ju7_A          344 AKRIVSLPLWEGMTKEIVEQIVICLGQKVVSA  375 (377)
T ss_dssp             HHHEEEECCCTTCCHHHHHHHHHHHTC-----
T ss_pred             HhCEEECCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence             4678999884  8999999999998887653

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=99.50  E-value=2.3e-13  Score=116.61  Aligned_cols=202  Identities=10%  Similarity=0.037  Sum_probs=122.5

Q ss_pred             Ccc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCC
Q 042445           20 VGS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNG   98 (246)
Q Consensus        20 tG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~   98 (246)
                      .|. .++++++++|.++|++||+++|.||++++  ..+..+ ....++-...   +-+++|.+ ..|+.+|.+++.+   
T Consensus       233 ~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tG--R~G~~~-a~e~~gv~PD---i~t~gK~l-ggG~Piga~~~~~---  302 (454)
T 4ao9_A          233 SGCIPGQPDFLQALRESATQVGALLVFDEVMTS--RLAPHG-LANKLGIRSD---LTTLGKYI-GGGMSFGAFGGRA---  302 (454)
T ss_dssp             TTCEECCHHHHHHHHHHHHHHTCEEEEECTTGG--GGSTTC-HHHHHTCCCS---EEEEEGGG-GTTSSCEEEEECH---
T ss_pred             CCccCCchhhHHHHHHHHhhcCCEEEEECCCcC--CCcccc-chhccCCCCc---EEEecccc-CCCCcceeeeeHH---
Confidence            454 45678999999999999999999999984  333222 1122222222   44678996 5679999999998   


Q ss_pred             CcchhhHHHHHHHH-----hhhcCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCc
Q 042445           99 ILQDSGIVDSIKIF-----LNISSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGS  172 (246)
Q Consensus        99 ~~~~~~~~~~l~~~-----~~~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g  172 (246)
                           ++++.+...     ...+++.||++.+++.+.|+... +...++..+.-...++.+.+..++.+-+. -+... |
T Consensus       303 -----ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~-~vrg~-G  375 (454)
T 4ao9_A          303 -----DVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFTPEAAGALAERGEALRARLNALCANEGVAM-QFTGI-G  375 (454)
T ss_dssp             -----HHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTBSC-EEEEE-T
T ss_pred             -----HHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHhhCCCCE-EEeee-c
Confidence                 888877532     22355789999999999887533 33333333332233333333333333121 12222 4


Q ss_pred             eEEEEEeccccccCC----C-C--hHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHHHHHHhh
Q 042445          173 MFVMVKLNYSLLEGI----N-S--DMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRHAE  244 (246)
Q Consensus       173 ~~~~~~~~~~~~~~~----~-~--~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~~~~~~  244 (246)
                      .++.+.+........    . +  -...+...+.++||++.|..      ++.++...++++++++++.|++++.++..
T Consensus       376 ~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~~Gv~~~p~~------~~~~s~~~T~~dId~~l~al~~~l~~~~a  448 (454)
T 4ao9_A          376 SLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLNEDIYSSPRG------FVVLSLPLTDADIDRYVAAIGSFIGGHGA  448 (454)
T ss_dssp             TEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHHTTEECCTTC------EEECCTTCCHHHHHHHHHHHHHHHHHSGG
T ss_pred             eEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHHCCEEEcCCC------CEEEeCCCCHHHHHHHHHHHHHHHHhccc
Confidence            444455533211100    0 1  11233445668999988743      34455556999999999999999988653

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=99.49  E-value=7.6e-13  Score=120.32  Aligned_cols=215  Identities=8%  Similarity=-0.009  Sum_probs=121.1

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcc-cCCC--CCccccc--cC-CcccEEEEcccccccccCC
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLA-FGNT--PFVSMGV--FG-SIVPLLTLGSISKRGIVPG   85 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~-~~~~--~~~~~~~--~~-~~~~~i~~~s~sK~~~~~g   85 (246)
                      ++++| ||+|.+.+   +++|.++|++||+++++||+|..+. +++.  +..++..  .+ ...+++++.|++|.+  +|
T Consensus       317 il~~p-n~~G~v~d---l~~I~~ia~~~~~~livDeA~~~~~~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L--~g  390 (755)
T 2vyc_A          317 VVTNC-TYDGVCYN---AKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLL--NA  390 (755)
T ss_dssp             EEESS-CTTSEEEC---HHHHHHHHTTTCSEEEEECTTCTTGGGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSS--SC
T ss_pred             EEECC-CCCceecC---HHHHHHHHHHcCCEEEEECcCchhcccCcccCCcchhcCCcCCccCCCeEEEECccccc--cC
Confidence            77889 89999976   8899999999999999999998543 3321  2223212  22 245788999999985  45


Q ss_pred             ce-EEEEEeeCCCCCcchhhHHHHHHHHhh-h-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 042445           86 LR-LGWLVTSDPNGILQDSGIVDSIKIFLN-I-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPC  162 (246)
Q Consensus        86 ~r-~G~i~~~~~~~~~~~~~~~~~l~~~~~-~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~  162 (246)
                      .+ .|++++++.....   + ...+..... . +++++....+++..++........++..+.+.++.+.+++.|+++++
T Consensus       391 ~~~g~~i~~~~~~~~i---~-~~~~~~~~~~~~s~sp~~~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~  466 (755)
T 2vyc_A          391 LSQASYIHVREGRGAI---N-FSRFNQAYMMHATTSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYK  466 (755)
T ss_dssp             CTTCEEEEEECCBTCC---C-HHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCeeeeeecCccccc---C-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence            44 4667776620011   1 123333221 1 23555555555444444211111233344444455555555544333


Q ss_pred             ---------CccccCC------------------------------------------CCce------EEEEEecccccc
Q 042445          163 ---------ITCPKKP------------------------------------------EGSM------FVMVKLNYSLLE  185 (246)
Q Consensus       163 ---------~~~~~~~------------------------------------------~~g~------~~~~~~~~~~~~  185 (246)
                               +..+.+.                                          ..+.      -+.+.++.....
T Consensus       467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~  546 (755)
T 2vyc_A          467 EFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGED  546 (755)
T ss_dssp             HHHTTTCCCCEESSCSEEECTTTCCEEEGGGSCHHHHHHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTT
T ss_pred             cccccccceeeccCchhccccccccccccccccchhccchhhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCC
Confidence                     2211110                                          0221      223333321111


Q ss_pred             ------CCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHH
Q 042445          186 ------GINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       186 ------~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~  242 (246)
                            |+  +...+.+.|+++||.+...    ..+.+|++++.  +.++++.+++.|.++.+.+
T Consensus       547 G~~~~~g~--~~~~l~~~L~~~gI~~e~~----~~~~v~~~~~~g~t~~~~~~l~~al~~~~~~~  605 (755)
T 2vyc_A          547 GELEETGV--PAALVTAWLGRHGIVPTRT----TDFQIMFLFSMGVTRGKWGTLVNTLCSFKRHY  605 (755)
T ss_dssp             SSBCSSCC--CHHHHHHHHHTTTCCCSEE----CSSEEEEECCTTCCTTTTHHHHHHHHHHHHHH
T ss_pred             CCccccCC--cHHHHHHHHHHCCCEEeec----CCCeEEEEECCCCCHHHHHHHHHHHHHHHHhh
Confidence                  12  3355566778899877442    26889999986  7888999888888886654

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=99.47  E-value=1.3e-12  Score=111.32  Aligned_cols=153  Identities=12%  Similarity=0.102  Sum_probs=101.5

Q ss_pred             hhhhhhhc--cc----cccC----CcCCCccCCChhhHHHHHHHHHH--cCCEEEEccccCCcccCCCCCccccccCCcc
Q 042445            2 ELINQDIT--RE----FSDF----QVFHVGSGFSGSFVSPIAETAKK--LGIMVIANEVYGHLAFGNTPFVSMGVFGSIV   69 (246)
Q Consensus         2 e~~~~~~~--~~----~~~~----p~NPtG~~~~~~~~~~l~~~~~~--~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~   69 (246)
                      |.+++.++  ++    ++++    |+||||.+   .++++|+++|++  +|+++++|++|..+.+...+.    ..   +
T Consensus       165 e~l~~~i~~~~~tklV~i~~s~gyp~nptg~v---~dl~~i~~ia~~~~~g~~livD~a~~~~~~~~~p~----~~---g  234 (427)
T 3hvy_A          165 NTVKEELKKDDSIKLIHIQRSTGYGWRKSLRI---AEIAEIIKSIREVNENVIVFVDNCYGEFVEEKEPT----DV---G  234 (427)
T ss_dssp             HHHHHHHHHCTTEEEEEEESSCCSSSSCCCCH---HHHHHHHHHHHHHCSSSEEEEECTTCTTTSSSCGG----GG---T
T ss_pred             HHHHHHhhCCCCCEEEEEECCCCCCCCccccH---HHHHHHHHHHHHhCCCCEEEEECCccccccCCCCc----cc---C
Confidence            45566565  33    6666    88998765   679999999999  899999999999776443221    11   1


Q ss_pred             cEEEEcccccccccCC-ceEEEEEeeCCCCCcchhhHHHHHHHHhh---hcCCCCc-hH-HHHHHHHHhhchHHHHHHHH
Q 042445           70 PLLTLGSISKRGIVPG-LRLGWLVTSDPNGILQDSGIVDSIKIFLN---ISSDPAT-FI-QGAVPQILEKTEEEFFSKII  143 (246)
Q Consensus        70 ~~i~~~s~sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~-~~-q~~~~~~l~~~~~~~~~~~~  143 (246)
                      ..++++|+||.++++| .+.||+++++        +++++++....   .....++ +. ...+.+.+.     .+..+.
T Consensus       235 aDiv~~S~sK~lgg~g~~~GG~i~~~~--------~li~~l~~~~~~~~~g~~~~~~~~~a~~~~~gl~-----~~~~r~  301 (427)
T 3hvy_A          235 ADIIAGSLIKNIGGGIATTGGYIAGKE--------EYVTQATFRVTVPGIGGECGSTFGVMRSLYEGLF-----MAPHVT  301 (427)
T ss_dssp             CSEEEEETTSGGGTTTCCSCEEEEECH--------HHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHH-----HHHHHH
T ss_pred             CeEEEECCcccccccccceEEEEEECH--------HHHHHHHHHhhcCCcccccCCCHHHHHHHHHhHh-----HHHHHH
Confidence            3389999999998766 4569999987        99999987532   2111222 22 333333333     345667


Q ss_pred             HHHHHHHHHHHHHhhcCCCCccccCCCCc-----eEEEEEec
Q 042445          144 DILRETADKCCDRLKEIPCITCPKKPEGS-----MFVMVKLN  180 (246)
Q Consensus       144 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~g-----~~~~~~~~  180 (246)
                      ++..+++..+.+.|++++ +..  .|..+     ..+.+.+.
T Consensus       302 ~~~~~~a~~la~~L~~~g-~~V--~p~~~~~~~~li~~~~l~  340 (427)
T 3hvy_A          302 IEAVKGAVFCARIMELAG-FDV--LPKYNDKRTDIIQAIKFN  340 (427)
T ss_dssp             HHHHHHHHHHHHHHHHTT-CEE--ESCTTSCCSSSEEEEECS
T ss_pred             HHHHHHHHHHHHHHHhCC-Cee--cCCCCCCCceEEEEEeCC
Confidence            778889999999999874 442  23222     25666665

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=99.37  E-value=2.1e-11  Score=102.73  Aligned_cols=205  Identities=14%  Similarity=0.076  Sum_probs=119.0

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEE-Ecc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLT-LGS   76 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~-~~s   76 (246)
                      +.+++.++++    +++   |++|..   .++++|.++|+++|+++|+|++|+.+.... .    ..++....+.. ...
T Consensus       119 ~~l~~~i~~~~~~v~~~---~~~g~~---~~~~~i~~l~~~~~~~li~D~a~~~g~~~~-~----~~~g~~~~~~~~s~~  187 (390)
T 3b8x_A          119 ESLKEAVTDSTKAILTV---NLLGNP---NNFDEINKIIGGRDIILLEDNCESMGATFN-N----KCAGTFGLMGTFSSF  187 (390)
T ss_dssp             HHHHHHCCTTEEEEEEE---CGGGCC---CCHHHHHHHHTTSCCEEEEECTTCTTCEET-T----EETTSSSSEEEEECC
T ss_pred             HHHHHHhCcCCeEEEEE---CCccCh---hhHHHHHHHHHHcCCEEEEECcCcccCEEC-C----cccccccceEEEEcc
Confidence            3455555543    443   345554   469999999999999999999999543221 1    11221111111 112


Q ss_pred             cccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhc--------------------------------CCCCchHH
Q 042445           77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNIS--------------------------------SDPATFIQ  124 (246)
Q Consensus        77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~--------------------------------~~~~~~~q  124 (246)
                      .+|.+++ | +.|++++++.       ++.+.++.....+                                +.++++..
T Consensus       188 ~~k~~~~-g-~gG~~~~~~~-------~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a  258 (390)
T 3b8x_A          188 YSNHIAT-M-EGGCIVTDDE-------EIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSG  258 (390)
T ss_dssp             TTSSSCS-S-SCEEEEESCH-------HHHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHH
T ss_pred             CCCCCcc-C-CceEEEeCCH-------HHHHHHHHHHhcCCCccccccccccccccccccccccceeccccccCcCHHHH
Confidence            3455432 3 3499998762       4555555432110                                11444544


Q ss_pred             HHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC-CCce-EEEEEeccccccCCCChHHHHHHHHHhcC
Q 042445          125 GAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKP-EGSM-FVMVKLNYSLLEGINSDMEFALKLAKEES  202 (246)
Q Consensus       125 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~g~-~~~~~~~~~~~~~~~~~~~~~~~ll~~~g  202 (246)
                      .++...+     +++++..+..+++++.+.+.|++++++.....+ ..++ .+++.++...  +.  +.+.+.+.|.++|
T Consensus       259 a~~l~~l-----~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~--~~~~l~~~L~~~g  329 (390)
T 3b8x_A          259 AIGIEQL-----KKLPRFISVRRKNAEYFLDKFKDHPYLDVQQETGESSWFGFSFIIKKDS--GV--IRKQLVENLNSAG  329 (390)
T ss_dssp             HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHTTCSSEEECCCCSBCCCCEEEEEECTTS--CC--CHHHHHHHHHHTT
T ss_pred             HHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCCCCcccEEEEEEecCcC--cc--cHHHHHHHHHHCC
Confidence            4443333     356777888888999999999988777632222 2233 3555665310  11  3445566677899


Q ss_pred             eEEecC---CCcCC----------------------CCeEEEEeec--ChHHHHHHHHHH
Q 042445          203 VIVLPG---ITVGL----------------------KDWLRITFAV--EPSALENGLGRM  235 (246)
Q Consensus       203 i~v~pg---~~f~~----------------------~~~iRls~~~--~~~~l~~~~~~l  235 (246)
                      |.+.+.   ..+..                      .+.+|+++..  ++++++.+++.|
T Consensus       330 I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~t~~di~~i~~~l  389 (390)
T 3b8x_A          330 IECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQIELFDEIDYLREVL  389 (390)
T ss_dssp             BCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHEEEEECCSSCCHHHHHHHHHHT
T ss_pred             CCeeeecCCchhhcchhhhcCCCCCcCCChHHHHHhcCEEEeeCCCCCCHHHHHHHHHhh
Confidence            999872   21111                      1469999885  889999888765

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=99.29  E-value=1.1e-10  Score=97.71  Aligned_cols=204  Identities=13%  Similarity=0.113  Sum_probs=128.0

Q ss_pred             ccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEE
Q 042445           13 SDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLV   92 (246)
Q Consensus        13 ~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~   92 (246)
                      +++-.|.||+..+.        +|+++|+++++|-+.+....+    ..+..+   +  +++.|.-|.+|.+|  +|+++
T Consensus       158 ~~h~et~tG~~~pi--------i~~~~~~~~~vD~~q~~g~~~----id~~~~---~--~~~~s~~K~~gp~G--~g~l~  218 (377)
T 3e77_A          158 YCANETVHGVEFDF--------IPDVKGAVLVCDMSSNFLSKP----VDVSKF---G--VIFAGAQKNVGSAG--VTVVI  218 (377)
T ss_dssp             EESEETTTTEECSS--------CCCCTTCCEEEECTTTTTSSC----CCGGGC---S--EEEEEGGGTTSCTT--CEEEE
T ss_pred             EeCccCchheEchh--------hhccCCCEEEEEcccccCCCC----Cchhhc---C--EEEEecccccCCCc--cEEEE
Confidence            33344677999885        367889999999988753321    122222   2  46678899998888  67887


Q ss_pred             eeCCCCCcc-----hhhHHH--HHHHHhhhcCCCCchHHHHHHHHHhhchHH-HHHHHHHHHHHHHHHHHHHhhcCCCCc
Q 042445           93 TSDPNGILQ-----DSGIVD--SIKIFLNISSDPATFIQGAVPQILEKTEEE-FFSKIIDILRETADKCCDRLKEIPCIT  164 (246)
Q Consensus        93 ~~~~~~~~~-----~~~~~~--~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~  164 (246)
                      ..+.  ...     .+.+++  ..........+++....+++..+++...+. -++...++.++..+.+.+.|++++|+.
T Consensus       219 ~~~~--~l~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~  296 (377)
T 3e77_A          219 VRDD--LLGFALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFY  296 (377)
T ss_dssp             EETT--SCSCCCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSE
T ss_pred             EcHH--HHhhccCCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCce
Confidence            7762  100     001111  011101112245666666677777643334 478888899999999999999988775


Q ss_pred             ccc-CC--CCceEEEEEeccccccCCCChH-HHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHH
Q 042445          165 CPK-KP--EGSMFVMVKLNYSLLEGINSDM-EFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAF  238 (246)
Q Consensus       165 ~~~-~~--~~g~~~~~~~~~~~~~~~~~~~-~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~  238 (246)
                      ... .+  ..+..+.+.++...  +. .+. ..+...+.++||.+++|...  .+.+|+|+..  ++++++.+++.|+++
T Consensus       297 ~~~~~~~~rs~~ivsf~~~~~~--~~-~~~~~~~l~~l~~~Gi~~~~g~~~--~g~iRiS~~~~~t~edId~l~~al~~~  371 (377)
T 3e77_A          297 VCPVEPQNRSKMNIPFRIGNAK--GD-DALEKRFLDKALELNMLSLKGHRS--VGGIRASLYNAVTIEDVQKLAAFMKKF  371 (377)
T ss_dssp             ECCSCGGGBCSSEEEEEESSTT--CC-HHHHHHHHHHHHHTTEESCBCCTT--TCSEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             ecCCCHHHcCCcEEEEEcCCCC--Cc-hhHHHHHHHHHHHCCcEEeCCCCc--CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            211 11  23444555565311  00 011 22344456889999887632  5679999985  899999999999999


Q ss_pred             HHHH
Q 042445          239 YDRH  242 (246)
Q Consensus       239 ~~~~  242 (246)
                      ++++
T Consensus       372 ~~~~  375 (377)
T 3e77_A          372 LEMH  375 (377)
T ss_dssp             HHHH
T ss_pred             HHHc
Confidence            8764

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=99.25  E-value=6.3e-10  Score=93.59  Aligned_cols=210  Identities=14%  Similarity=0.053  Sum_probs=127.7

Q ss_pred             hhhhhhccc----cccCCcCCCccC-CChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            3 LINQDITRE----FSDFQVFHVGSG-FSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         3 ~~~~~~~~~----~~~~p~NPtG~~-~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      .++..+.++    .+++-.|.||+. .+.+++   .     +|+++++|-+.+....    +..+..+   +  +.+.|.
T Consensus       158 ~~~~~l~~~t~lV~~~h~et~tG~~i~pi~~i---~-----~g~~~~vDa~qs~g~~----pidv~~~---~--~~~~s~  220 (386)
T 3qm2_A          158 MREWQLSDNAAYLHYCPNETIDGIAIDETPDF---G-----PEVVVTADFSSTILSA----PLDVSRY---G--VIYAGA  220 (386)
T ss_dssp             GGGCCCCTTCSCEEECSEETTTTEECCCCCCC---C-----TTCCEEEECTTTTTSS----CCCGGGC---S--EEEEET
T ss_pred             HHHhhcCCCCcEEEEECCcCCcCEecCchhhh---c-----CCCEEEEEcccccCCC----CCCcccc---C--EEEEec
Confidence            344445544    333333666996 554444   2     7999999998875331    1122222   2  456888


Q ss_pred             ccccccCCceEEEEEeeCCC-----CCcchhhHHH--HHHHHhhhcCCCCchHHHHHHHHHhhchHH-HHHHHHHHHHHH
Q 042445           78 SKRGIVPGLRLGWLVTSDPN-----GILQDSGIVD--SIKIFLNISSDPATFIQGAVPQILEKTEEE-FFSKIIDILRET  149 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~-----~~~~~~~~~~--~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~-~~~~~~~~~~~~  149 (246)
                      -|.+|.+|  +|+++..+.-     ....  .+++  ..........++|.....++..+++...+. -+++..++.++.
T Consensus       221 hK~lGP~G--~g~l~v~~~~~~~~~~~~p--~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l  296 (386)
T 3qm2_A          221 QKNIGPAG--LTLVIVREDLLGKAHESCP--SILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQK  296 (386)
T ss_dssp             TTTTCCTT--EEEEEEEGGGCSCCCTTSC--GGGCHHHHHHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred             ccccCCCc--cEEEEECHHHHhhhcccCC--cHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            99998777  8888887620     0000  1111  011111112255666777777777743334 488888899999


Q ss_pred             HHHHHHHhhcCCCC-ccccCC--CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--C
Q 042445          150 ADKCCDRLKEIPCI-TCPKKP--EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--E  224 (246)
Q Consensus       150 ~~~l~~~L~~~~~~-~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~  224 (246)
                      ++.+.+.|+++ ++ .....+  .....+.+.++...+     +.++ ...|.++||.+.+|..+  .+.+|+|+..  +
T Consensus       297 ~~~l~~~l~~~-~~~~~~~~~~~rs~~iv~f~~~~~~~-----~~~~-~~~L~~~gI~~~~g~~~--~~~iRiS~~~~~t  367 (386)
T 3qm2_A          297 AELLYGVIDNS-DFYRNDVAQANRSRMNVPFQLADNTL-----DKVF-LEESFAAGLHALKGHRV--VGGMRASIYNAMP  367 (386)
T ss_dssp             HHHHHHHHHTC-SSEECCBCGGGBCSSEEEEEESSGGG-----HHHH-HHHHHHTTEECCBCCTT--TCSEEEECCTTSC
T ss_pred             HHHHHHHHHHC-CCcccCCCHHHcCceEEEEECCCccc-----cHHH-HHHHHHCCCEEeCCCCC--cCeEEEEcCCCCC
Confidence            99999999987 44 211122  234556666764221     4444 44478899999887654  3569999985  7


Q ss_pred             hHHHHHHHHHHHHHHHHH
Q 042445          225 PSALENGLGRMKAFYDRH  242 (246)
Q Consensus       225 ~~~l~~~~~~l~~~~~~~  242 (246)
                      +++++.+++.|+++.+++
T Consensus       368 ~edId~l~~~l~~~~~~~  385 (386)
T 3qm2_A          368 IEGVKALTDFMIDFERRH  385 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            999999999999988764

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.18  E-value=6e-10  Score=92.93  Aligned_cols=195  Identities=15%  Similarity=0.118  Sum_probs=128.6

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      .+++-.|.||+..+.        +++ +|+++++|-+.+.....    ..+..   .+  +++.|.-|.+|.+|  +|++
T Consensus       145 ~~~~~e~~tG~~~~~--------i~~-~~~~~~vD~~q~~g~~~----id~~~---~d--~~~~s~~K~~gp~G--~g~l  204 (361)
T 3m5u_A          145 YICSNNTIYGTQYQN--------YPK-TKTPLIVDASSDFFSRK----VDFSN---IA--LFYGGVQKNAGISG--LSCI  204 (361)
T ss_dssp             EEESEETTTTEECSS--------CCC-CSSCEEEECGGGTTSSC----CCCTT---EE--EEEEETTTTSSCTT--CEEE
T ss_pred             EEeCCCCCcceeCCc--------ccc-cCCEEEEEcccccCCCC----CCccc---CC--EEEEechhccCCCc--cEEE
Confidence            334444677998762        233 49999999988753321    11221   22  67778999998777  7888


Q ss_pred             EeeCCCCCcchhhHHHHHHH-----------H--hh-hcCCCCchHHHHHHHHHhhchHH-HHHHHHHHHHHHHHHHHHH
Q 042445           92 VTSDPNGILQDSGIVDSIKI-----------F--LN-ISSDPATFIQGAVPQILEKTEEE-FFSKIIDILRETADKCCDR  156 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~-----------~--~~-~~~~~~~~~q~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~  156 (246)
                      +..+        ++++.+..           .  .. ...+++.....++..+++...+. -++...++.++..+.+.+.
T Consensus       205 ~~~~--------~~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~  276 (361)
T 3m5u_A          205 FIRK--------DMLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYEC  276 (361)
T ss_dssp             EEEH--------HHHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred             EEcH--------HHHhhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence            8887        77666542           1  01 11245666666666666632223 3788888889999999999


Q ss_pred             hhcCCCC-ccccCC--CCceEEEEEecc-ccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHH
Q 042445          157 LKEIPCI-TCPKKP--EGSMFVMVKLNY-SLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALEN  230 (246)
Q Consensus       157 L~~~~~~-~~~~~~--~~g~~~~~~~~~-~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~  230 (246)
                      |++++++ ..+..+  .....+.+.++. ..+     +.+ +...|.++||.+.+|...  .+.+|+|+..  +.++++.
T Consensus       277 L~~~~g~~~~~~~~~~rs~~ivsf~~~~~~~~-----~~~-~~~~L~~~gI~~~~g~~~--~g~iRiS~~~~~t~edId~  348 (361)
T 3m5u_A          277 IDLSNGFYKGHADKKDRSLMNVSFNIAKNKDL-----EPL-FVKEAEEAGMIGLKGHRI--LGGIRASIYNALNLDQVKT  348 (361)
T ss_dssp             HHTSTTSEEESSCGGGBCSSEEEEEESSCTTH-----HHH-HHHHHHHTTEECCBCCTT--TCSEEEECCTTSCHHHHHH
T ss_pred             HHHCCCeeeccCCHHHcCCeEEEEECCCchhh-----hHH-HHHHHHHCCCEEecCCCc--cCeEEEEccCCCCHHHHHH
Confidence            9998766 322222  223455555664 111     333 456778899999887643  3679999985  8999999


Q ss_pred             HHHHHHHHHHHH
Q 042445          231 GLGRMKAFYDRH  242 (246)
Q Consensus       231 ~~~~l~~~~~~~  242 (246)
                      +++.|+++.+++
T Consensus       349 l~~al~~~~~~~  360 (361)
T 3m5u_A          349 LCEFMKEFQGKY  360 (361)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc
Confidence            999999988764

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*

Probab=99.09  E-value=3e-09  Score=95.65  Aligned_cols=209  Identities=12%  Similarity=0.024  Sum_probs=114.9

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcc-cCCCC--CccccccC-Cccc-EEEEcccccccccCCc
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLA-FGNTP--FVSMGVFG-SIVP-LLTLGSISKRGIVPGL   86 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~-~~~~~--~~~~~~~~-~~~~-~i~~~s~sK~~~~~g~   86 (246)
                      ++++| ||+|.+++   +++|.++|++++  +++||+|..+. +++..  ...+. .+ ..+. +++++|++|.++++ -
T Consensus       302 ivt~p-n~~G~v~d---l~~I~ela~~~~--livDEAH~~~~~f~~~~~~~~al~-~g~~aD~vii~~~S~hKtL~gl-t  373 (715)
T 3n75_A          302 VITNS-TYDGLLYN---TDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGKCGMS-GGRVEGKVIYETQSTHKLLAAF-S  373 (715)
T ss_dssp             EEESS-CTTSEEEC---HHHHHHHCCCSE--EEEECTTCTTGGGSGGGTTSSTTS-SSCCTTCEEEEEECHHHHSSCC-T
T ss_pred             EEECC-CCCCccCC---HHHHHHHhCcCc--EEEccccccccccCCccccccccc-cCcCCCEEEEEEecccccccCC-C
Confidence            88899 99999997   667777777663  79999998654 43211  11221 11 1234 36799999996542 0


Q ss_pred             eEEEEEeeCCCCCcchhhHHHHHHHHhh--hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCC--
Q 042445           87 RLGWLVTSDPNGILQDSGIVDSIKIFLN--ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPC--  162 (246)
Q Consensus        87 r~G~i~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--  162 (246)
                      ..|++.+++.  +     ....+.....  .++++|.+..+++..++.......-.++++.+.++.+.+++.|+++++  
T Consensus       374 qgs~i~v~~~--i-----~~~~~~~~~~~~~STSpsy~~~AsldaA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~~~~  446 (715)
T 3n75_A          374 QASMIHVKGD--V-----NEETFNEAYMMHTTTSPHYGIVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTES  446 (715)
T ss_dssp             TCEEEEEESC--C-----CHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             CeeEEEeCch--h-----hHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence            2388888773  1     1223333322  233667777666666654221123344566666777777777665432  


Q ss_pred             ----CccccC------------C----------CCceE------EEEEecccccc------CCCChHHHHHHHHHhcCeE
Q 042445          163 ----ITCPKK------------P----------EGSMF------VMVKLNYSLLE------GINSDMEFALKLAKEESVI  204 (246)
Q Consensus       163 ----~~~~~~------------~----------~~g~~------~~~~~~~~~~~------~~~~~~~~~~~ll~~~gi~  204 (246)
                          +..+..            |          ..+.+      +.+.++.....      |+  +...+.+.|+++||.
T Consensus       447 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~~~~~~Dp~Kl~i~~~~~~~~G~~~~~Gi--~g~~~~~~L~~~~I~  524 (715)
T 3n75_A          447 DGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLTPGMEKDGTMSDFGI--PASIVAKYLDEHGIV  524 (715)
T ss_dssp             SSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCCSSSEEECTTEEEEECSCBCTTSCBCSSCC--CHHHHHHHHHHTTCC
T ss_pred             ccceeeccCcccccchhhhccCcccccccccccccCcccCCCeEEEEEcCCCCCCCccccCCC--cHHHHHHHHHHCCCE
Confidence                121111            0          01111      12222211000      12  344566778888987


Q ss_pred             EecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHH
Q 042445          205 VLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDR  241 (246)
Q Consensus       205 v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~  241 (246)
                      +--..    .+.+-+-++.  +.+.++.+++.|.++-+.
T Consensus       525 ~E~~d----~~~vl~l~s~g~~~~~~~~L~~aL~~~~~~  559 (715)
T 3n75_A          525 VEKTG----PYNLLFLFSIGIDKTKALSLLRALTDFKRA  559 (715)
T ss_dssp             CSEEE----TTEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEecC----CCcEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence            64322    4555555553  677777777777766543

>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}

Probab=98.95  E-value=1.6e-07  Score=79.27  Aligned_cols=198  Identities=15%  Similarity=0.057  Sum_probs=130.3

Q ss_pred             hHHHHHHHHHHcCCEEEEccccC-CcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCC--------
Q 042445           28 FVSPIAETAKKLGIMVIANEVYG-HLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNG--------   98 (246)
Q Consensus        28 ~~~~l~~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~--------   98 (246)
                      +++++.++|.+.|+++++|-+|. ++.-++-.+.|+...     -|+..|..|.|.  |=|-|.|.+.+...        
T Consensus       219 d~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~~A-----DvVTtTTHKTLr--GPrGG~Il~~~~~~~~~~k~~~  291 (490)
T 3ou5_A          219 DYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHA-----DIVTTTTHKTLR--GARSGLIFYRKGVKAVDPKTGR  291 (490)
T ss_dssp             CHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGTC-----SEEEEESSSTTC--SCSCEEEEEECSEEEECC--CC
T ss_pred             CHHHHHHHHhhcccEEEechhhhhhhhcccccCCccccc-----eEEecccccccc--CCCceEEEeccccccccccccc
Confidence            48888899999999999999987 555555444444321     177888999964  55668888765200        


Q ss_pred             -CcchhhHHHHHHHHhhhcCCCCch--HHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEE
Q 042445           99 -ILQDSGIVDSIKIFLNISSDPATF--IQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFV  175 (246)
Q Consensus        99 -~~~~~~~~~~l~~~~~~~~~~~~~--~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~  175 (246)
                       ...  ++.+++...-.++.-.+|.  ..++.+.++.+......+...++..+|++.|.+.|.+. |+..+........+
T Consensus       292 ~~~~--~~~kkin~aVFPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~-G~~vvsGgTdnHlv  368 (490)
T 3ou5_A          292 EIPY--TFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER-GYSLVSGGTDNHLV  368 (490)
T ss_dssp             EEEC--CCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEE
T ss_pred             hhHH--HHHHHHHhhcCccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCCCceEE
Confidence             000  3566777664433322332  23333334443334556777788889999999999886 66644444556788


Q ss_pred             EEEeccccccCCCChHHHHHHHHHhcCeEEe----cCCCcCC-CCeEEEEee------cChHHHHHHHHHHHHHHH
Q 042445          176 MVKLNYSLLEGINSDMEFALKLAKEESVIVL----PGITVGL-KDWLRITFA------VEPSALENGLGRMKAFYD  240 (246)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~----pg~~f~~-~~~iRls~~------~~~~~l~~~~~~l~~~~~  240 (246)
                      ++++....+     +-+.+..+|.+.||.+.    |+..-.. ++.|||+..      ..++++++..+.|.+++.
T Consensus       369 LvDl~~~g~-----tG~~ae~~Le~agItvNkN~iP~D~sp~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~~~l~  439 (490)
T 3ou5_A          369 LVDLRPKGL-----DGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN  439 (490)
T ss_dssp             EEECGGGTC-----CHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             EEeccccCC-----CHHHHHHHHHHcCcEECCCCCCCCCCCCCCCeeEECCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            888765432     56677888999999886    4332111 688999855      277889999988888764

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=98.86  E-value=2.2e-07  Score=78.72  Aligned_cols=205  Identities=13%  Similarity=0.112  Sum_probs=117.1

Q ss_pred             hhHHHHHHHHHHcCCEEEEccccCCcc-cCCCCCccccccCCcccEEEEcccccccccCCceEEEEE-eeCCCCCcchhh
Q 042445           27 SFVSPIAETAKKLGIMVIANEVYGHLA-FGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLV-TSDPNGILQDSG  104 (246)
Q Consensus        27 ~~~~~l~~~~~~~~~~ii~De~y~~~~-~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~-~~~~~~~~~~~~  104 (246)
                      +++++|.++|++||+++++||+|.... +....+.+...++.-  -+++.|..|.+.++ +. |+++ ..+.       +
T Consensus       233 ddI~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~GrA--D~vVqS~HK~llvp-IG-G~ii~~~d~-------e  301 (501)
T 3hl2_A          233 DRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRI--DAFVQSLDKNFMVP-VG-GAIIAGFND-------S  301 (501)
T ss_dssp             CCHHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHSCC--CEEEEEHHHHHCCC-SS-CEEEEESCH-------H
T ss_pred             ccHHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcCCC--cEEEecccccceee-cC-ceEEEeCCH-------H
Confidence            469999999999999999999999654 211111122222211  26788899997665 22 4444 4442       6


Q ss_pred             HHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCC---CCccccCCCCceEEEEEecc
Q 042445          105 IVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIP---CITCPKKPEGSMFVMVKLNY  181 (246)
Q Consensus       105 ~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~g~~~~~~~~~  181 (246)
                      +++++....+ +...+..+.......+.- ..+.++++.+...++.+.+.+.|+++.   |-.....|.-...+-+.+..
T Consensus       302 ~l~~~~~~yP-Gr~S~Spsldl~~tLL~l-Gr~Gy~~ll~e~~ela~~L~~~L~~la~~~ge~ll~~~~n~is~a~tl~~  379 (501)
T 3hl2_A          302 FIQEISKMYP-GRASASPSLDVLITLLSL-GSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKT  379 (501)
T ss_dssp             HHHHHHHTSC-SCBCSHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCBCCCTTCSSEEEEECTT
T ss_pred             HHHHHHHhCC-CCCCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhcCCCCCceeEEEeccc
Confidence            6666644322 212233333344444443 344456677777778888888887632   22223344344555555543


Q ss_pred             ccccCCCChHHHHHHHHHhcCe---EEe-cCC----------CcCC------CCeEEEEee--cChHHHHHHHHHHHHHH
Q 042445          182 SLLEGINSDMEFALKLAKEESV---IVL-PGI----------TVGL------KDWLRITFA--VEPSALENGLGRMKAFY  239 (246)
Q Consensus       182 ~~~~~~~~~~~~~~~ll~~~gi---~v~-pg~----------~f~~------~~~iRls~~--~~~~~l~~~~~~l~~~~  239 (246)
                      ..-.. ..+...+-..|-.++|   -|+ +|.          .|+.      ..|+-++-+  .+.++++..+++|.+++
T Consensus       380 ~~~~~-~~~~t~~gs~Lf~r~vsG~Rvv~~~~~~~i~g~~f~~~g~h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~  458 (501)
T 3hl2_A          380 LDEHR-DKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCL  458 (501)
T ss_dssp             SCTTT-SCHHHHHHHHHHHTTCCSCEEECTTCCEEETTEEESSTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred             ccccc-cccHHHHHHHHHhcCCCcceeecCCCceEECCeeecCcccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            21000 1234444445555544   333 344          3433      467777655  48999999999999999


Q ss_pred             HHHhhc
Q 042445          240 DRHAEK  245 (246)
Q Consensus       240 ~~~~~~  245 (246)
                      .++.++
T Consensus       459 ~~~~~~  464 (501)
T 3hl2_A          459 KAVRKE  464 (501)
T ss_dssp             HHHHC-
T ss_pred             HHHHHh
Confidence            988754

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=98.59  E-value=2e-06  Score=73.21  Aligned_cols=217  Identities=11%  Similarity=0.049  Sum_probs=110.8

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCcccccc--CCcccEEEEcccccccccCCceEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVF--GSIVPLLTLGSISKRGIVPGLRLG   89 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~--~~~~~~i~~~s~sK~~~~~g~r~G   89 (246)
                      ++.+| +-+| ....+++++|.++|++||+++++|++|+.......+. +-..+  +..|  .++.|..|.++.+ ...+
T Consensus       202 Vv~t~-t~~g-~g~~ddl~~Ia~ia~~~gi~l~VD~A~G~~~~~~~~l-~~~a~~~~~AD--~~v~S~HK~l~a~-~~~~  275 (450)
T 3bc8_A          202 LHSTT-ACFA-PRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHL-IQQGARVGRID--AFVQSLDKNFMVP-VGGA  275 (450)
T ss_dssp             EEEES-SCCT-TBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHH-HHHHHHHSCCC--EEEEEHHHHHSCC-SSCE
T ss_pred             EEEEC-CcCC-CceecCHHHHHHHHHHCCCeEEEECCCchhhhhhHhH-HHHHhcccCCC--EEEECCccCCCch-hccE
Confidence            66666 3333 1123569999999999999999999999644211111 10111  1111  4667899996443 3445


Q ss_pred             EEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCC---CCccc
Q 042445           90 WLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIP---CITCP  166 (246)
Q Consensus        90 ~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~~~~  166 (246)
                      ++...+.       +.++.+..... ....+.++.......+.. ..+.+.+..+...+..+.+.+.|++++   +....
T Consensus       276 ~l~~rd~-------~~~~~~~~~~~-g~~s~SpsL~l~~~l~~~-G~~g~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l  346 (450)
T 3bc8_A          276 IIAGFNE-------PFIQDISKMYP-GRASASPSLDVLITLLSL-GCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLL  346 (450)
T ss_dssp             EEEESCH-------HHHHHHHHHSC-SCBCSHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBC
T ss_pred             EEEecCH-------HHHHHHHHHhh-cCCcccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCceec
Confidence            6665442       55655544321 111223344444444443 333344444445566677777776654   55432


Q ss_pred             cCCCCceEEEEEeccccccCCCChHHHHHHHHHhcC---eEEec---------------CCCcCC--CCeEEEEeec--C
Q 042445          167 KKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEES---VIVLP---------------GITVGL--KDWLRITFAV--E  224 (246)
Q Consensus       167 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~g---i~v~p---------------g~~f~~--~~~iRls~~~--~  224 (246)
                      ..+.-+.-..+.++.-.- .-..+...+.-.+...|   .-+.+               |.....  ..++-+.++.  +
T Consensus       347 ~~~~~~~~~~~~l~~~~~-~~~~D~tkl~i~~~~~g~sG~~v~~~~~~~~~~~~~l~~~gi~~E~~~~~~i~~~~sig~~  425 (450)
T 3bc8_A          347 QTPHNPISLAMTLKTIDG-HHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMK  425 (450)
T ss_dssp             CCTTCSSEEEEECTTTSS-SSSCHHHHHHHHHHHTTCCSCEEECSCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTCC
T ss_pred             CCccCCCcceeecccccc-cccCCCceeEEEecCCCCccceeeecccccchhHHHHHHcCCeeecCCCCcEEEEecCCCC
Confidence            222211122222321100 00013333333343444   23321               111111  5677666664  8


Q ss_pred             hHHHHHHHHHHHHHHHHHhh
Q 042445          225 PSALENGLGRMKAFYDRHAE  244 (246)
Q Consensus       225 ~~~l~~~~~~l~~~~~~~~~  244 (246)
                      .+++++.+++|.+..+++++
T Consensus       426 ~~di~~l~~~L~~~~~~~~~  445 (450)
T 3bc8_A          426 MQDVDLFIKRLDKCLNIVRK  445 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            89999999999998776654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	246
d1j32a_	388	c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pho	1e-29
d1xi9a_	395	c.67.1.1 (A:) Putative alanine aminotransferase {P	3e-28
d1bw0a_	412	c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Try	8e-26
d1b5pa_	382	c.67.1.1 (A:) Aspartate aminotransferase, AAT {The	9e-24
d2hoxa1	425	c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativ	6e-22
d1gdea_	388	c.67.1.1 (A:) Aromatic aminoacid aminotransferase,	5e-21
d1wsta1	403	c.67.1.1 (A:13-415) Multiple substrate aminotransf	5e-17
d1m7ya_	431	c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy	6e-17
d1w7la_	418	c.67.1.1 (A:) Kynurenine--oxoglutarate transaminas	3e-15
d1o4sa_	375	c.67.1.1 (A:) Aspartate aminotransferase, AAT {The	1e-14
d1iaya_	428	c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy	1e-13
d1c7na_	394	c.67.1.3 (A:) Cystalysin {Treponema denticola [Tax	2e-12
d1u08a_	382	c.67.1.1 (A:) Putative methionine aminotransferase	8e-12
d1d2fa_	361	c.67.1.3 (A:) Modulator in mal gene expression, Ma	4e-11
d1vp4a_	420	c.67.1.1 (A:) Putative aminotransferase TM1131 {Th	4e-11
d2r5ea1	418	c.67.1.1 (A:12-429) Kynurenine--oxoglutarate trans	5e-11
d1yaaa_	412	c.67.1.1 (A:) Aspartate aminotransferase, AAT {Bak	2e-10
d1ajsa_	412	c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig	2e-09
d2gb3a1	389	c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotog	3e-09
d2q7wa1	396	c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT	7e-09
d1v2da_	368	c.67.1.1 (A:) Glutamine aminotransferase {Thermus	7e-09
d1fg7a_	354	c.67.1.1 (A:) Histidinol-phosphate aminotransferas	1e-07
d3tata_	397	c.67.1.1 (A:) Aromatic aminoacid aminotransferase,	1e-07
d7aata_	401	c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chi	3e-07
d2ay1a_	394	c.67.1.1 (A:) Aromatic aminoacid aminotransferase,	7e-06

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} Length = 388

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

 Score =  112 bits (280), Expect = 1e-29
 Identities = 46/220 (20%), Positives = 99/220 (45%), Gaps = 15/220 (6%)

Query: 21  GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVP--LLTLGSIS 78
           G  ++   V  IA+ A + G+ V+++E+Y  + + +   +S+G          +     +
Sbjct: 177 GMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFA 236

Query: 79  KRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEF 138
           K   + G R+G+L    P        +  + KI  + +S+  TF Q       E +++  
Sbjct: 237 KTYAMTGWRVGFLAGPVPL-------VKAATKIQGHSTSNVCTFAQYGAIAAYENSQD-C 288

Query: 139 FSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLA 198
             +++    E      D L  +P + CPK P+G+ ++   +     +   S ++F  +L 
Sbjct: 289 VQEMLAAFAERRRYMLDALNAMPGLECPK-PDGAFYMFPSIA----KTGRSSLDFCSELL 343

Query: 199 KEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAF 238
            +  V  +PG   G  D +R+++A +   ++ G+ R++ F
Sbjct: 344 DQHQVATVPGAAFGADDCIRLSYATDLDTIKRGMERLEKF 383

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} Length = 395

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

 Score =  108 bits (270), Expect = 3e-28
 Identities = 44/172 (25%), Positives = 71/172 (41%), Gaps = 9/172 (5%)

Query: 69  VPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVP 128
           VP++ +  +SK     G RLG++   DP   L +  + ++I     I   P T  Q A  
Sbjct: 227 VPVIVMNGLSKVYFATGWRLGYMYFVDPENKLSE--VREAIDRLARIRLCPNTPAQFAAI 284

Query: 129 QILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGIN 188
             L     ++  + +  L+E  D    RL EIP I+  K P+G+ ++  K+         
Sbjct: 285 AGLTG-PMDYLKEYMKKLKERRDYIYKRLNEIPGISTTK-PQGAFYIFPKIEVG---PWK 339

Query: 189 SDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKAF 238
           +D EF L +     V+ + G   G       R  F      LE  + R + F
Sbjct: 340 NDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLPPIEILEEAMDRFEKF 391

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} Length = 412

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

 Score =  102 bits (253), Expect = 8e-26
 Identities = 55/208 (26%), Positives = 98/208 (47%), Gaps = 7/208 (3%)

Query: 40  GIMVIANEVYGHLAFGNTPFVS----MGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSD 95
            + + ++E+Y  + F      +    +  F + VP + LG  +K  +VPG RLGWL+   
Sbjct: 207 RLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGWRLGWLLY-- 264

Query: 96  PNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD 155
            +        ++ +K    +   P T +Q A+ + L  T +E   +I+  + E+A    +
Sbjct: 265 VDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYN 324

Query: 156 RLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKD 215
            + E   +     P G+M++M +++      I +D+EF  KL +EE+V VLPG       
Sbjct: 325 HIGECIGLAPTM-PRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPG 383

Query: 216 WLRITFAVEPSALENGLGRMKAFYDRHA 243
           + R+T           + R+KAF  RHA
Sbjct: 384 FTRLTTTRPVEVYREAVERIKAFCQRHA 411

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} Length = 382

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

 Score = 96.0 bits (238), Expect = 9e-24
 Identities = 39/218 (17%), Positives = 77/218 (35%), Gaps = 14/218 (6%)

Query: 21  GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKR 80
           G+ +    +  +A  A +    ++++E+Y HL +    F    V       LT+   +K 
Sbjct: 178 GAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHT--LTVNGAAKA 235

Query: 81  GIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFS 140
             + G R+G+     P  +++    + S+      S D             ++    F  
Sbjct: 236 FAMTGWRIGYACG--PKEVIKA---MASVSRQSTTSPDTIAQWATLEALTNQEASRAFVE 290

Query: 141 KIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKE 200
              +  R   D   + L  +       +P G+ +V++  +      I  D   A +   E
Sbjct: 291 MAREAYRRRRDLLLEGLTALGLKAV--RPSGAFYVLMDTS-----PIAPDEVRAAERLLE 343

Query: 201 ESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAF 238
             V V+PG        +R+++A     L   L R    
Sbjct: 344 AGVAVVPGTDFAAFGHVRLSYATSEENLRKALERFARV 381

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} Length = 425

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

 Score = 91.3 bits (226), Expect = 6e-22
 Identities = 23/219 (10%), Positives = 62/219 (28%), Gaps = 30/219 (13%)

Query: 41  IMVIANEVYGHLAFGN--TPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNG 98
           ++     +Y  + +    TP             + L ++SK     G R GW +  D + 
Sbjct: 216 VIKGCKSIYDMVYYWPHYTPIKYKAD-----EDILLFTMSKFTGHSGSRFGWALIKDESV 270

Query: 99  ILQDSGIVDSIKIFLNISSDPATFIQGAVPQILE----------KTEEEFFSKIIDILRE 148
                     +      +       Q    ++L+           T  +  +     LRE
Sbjct: 271 YNNL------LNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRE 324

Query: 149 TADKCCDRLKEIPCITCPKKPEGSMFVMVKL------NYSLLEGINSDMEFALKLAKEES 202
                   L +    +  + P+       +       +Y+ ++    + +   +  +   
Sbjct: 325 RWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGR 384

Query: 203 VIVLPGITVGL-KDWLRITFAVEPSALENGLGRMKAFYD 240
           +    G+       ++R++        +  +  +K    
Sbjct: 385 INTQNGVGFEASSRYVRLSLIKTQDDFDQLMYYLKDMVK 423

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 388

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 88.4 bits (218), Expect = 5e-21
 Identities = 39/210 (18%), Positives = 80/210 (38%), Gaps = 15/210 (7%)

Query: 32  IAETAKKLGIMVIANEVYGHLAFGNTPFVSM-GVFGSIVPLLTLGSISKRGIVPGLRLGW 90
           IA+   +  ++VI++EVY H  + +    S+  + G     +T+   SK   + G RLG+
Sbjct: 184 IADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGF 243

Query: 91  LVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETA 150
           +                      N +         A   + ++   +   ++        
Sbjct: 244 VAAPSWIIERM------VKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRR 297

Query: 151 DKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGIT 210
                RL          KP+G+ ++  ++     +   +  +F+  + KE  V V+PG  
Sbjct: 298 KLVWKRL--NEMGLPTVKPKGAFYIFPRIR----DTGLTSKKFSELMLKEARVAVVPGSA 351

Query: 211 VGL--KDWLRITFAVEPSALENGLGRMKAF 238
            G   + ++RI++A     LE  + RM+  
Sbjct: 352 FGKAGEGYVRISYATAYEKLEEAMDRMERV 381

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} Length = 403

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

 Score = 77.4 bits (189), Expect = 5e-17
 Identities = 48/235 (20%), Positives = 87/235 (37%), Gaps = 23/235 (9%)

Query: 19  HVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSIS 78
             G   S      + E A +   +++ +  Y  L +   P   +  F     ++ LG+ S
Sbjct: 183 PAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDYGRVIYLGTFS 242

Query: 79  KRGIVPGLRLGWLVTSDP--NGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEE 136
           K  + PG R+GW+         +      +D        +        G + + + K  E
Sbjct: 243 KI-LAPGFRIGWVAAHPHLIRKMEIAKQSIDLCTNTFGQAIAWKYVENGYLDEHIPKIIE 301

Query: 137 EFFSKIIDILRETADKCCDRLKE-IPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFAL 195
            +  +         D   + L+E +P      KPEG MFV V L     EGI  D +  +
Sbjct: 302 FYKPRR--------DAMLEALEEYMPEGVEWTKPEGGMFVRVTLP----EGI--DTKLMM 347

Query: 196 KLAKEESVIVLPGITVGL----KDWLRITFA-VEPSALENGLGRMKAFYDRHAEK 245
           + A  + V  +PG    +    K+ +R+ F  V    +  G+ R+        ++
Sbjct: 348 ERAVAKGVAYVPGEAFFVHRDKKNTMRLNFTYVPEETIREGVRRLAETIKEEMKR 402

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} Length = 431

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

 Score = 77.0 bits (188), Expect = 6e-17
 Identities = 40/217 (18%), Positives = 80/217 (36%), Gaps = 22/217 (10%)

Query: 40  GIMVIANEVYGHLAFGNTPFVSM----------GVFGSIVPLLTLGSISKRGIVPGLRLG 89
           GI +I++E+Y   AF +  F+S+                  +  + S+SK   +PG R+G
Sbjct: 222 GIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVG 281

Query: 90  WLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRET 149
            + ++D         +V +     +     +         + +K   + +        + 
Sbjct: 282 AIYSNDDM-------VVAAATKMSSFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQ 334

Query: 150 ADKCCDRLKEIPCITCPKKPEGSMFVMVKL-NYSLLEGINSDMEFALKLAKEESVIVLPG 208
             K      +   I+C       +F  V + +        ++ME   K+  E  + + PG
Sbjct: 335 RQKKLVSGLQKSGISCLN-GNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPG 393

Query: 209 ITVGL--KDWLRITFAVEPSA-LENGLGRMKAFYDRH 242
            +       W R+ FA  P   L+  + R+KAF   +
Sbjct: 394 SSCHCTEPGWFRVCFANLPERTLDLAMQRLKAFVGEY 430

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} Length = 418

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.1 bits (175), Expect = 3e-15
 Identities = 30/236 (12%), Positives = 76/236 (32%), Gaps = 19/236 (8%)

Query: 19  HVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVP-LLTLGSI 77
            +G  FS   +  +A   ++  ++ I +EVY  + +     +S+     +    LT+GS 
Sbjct: 183 PLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSA 242

Query: 78  SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEE 137
            K     G ++GW++  D                  +  +     +  +  +      + 
Sbjct: 243 GKTFSATGWKVGWVLGPDHI---MKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQP 299

Query: 138 FFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLE--------GINS 189
               +         +             P  P+GS F++  ++    +            
Sbjct: 300 SSYFVQFPQAMQRCRDHMIRSLQSVGLKPLIPQGSYFLITDISDFKRKMPDLPGAVDEPY 359

Query: 190 DMEFALKLAKEESVIVLPGITVG-------LKDWLRITFAVEPSALENGLGRMKAF 238
           D  F   + K + ++ +P               ++R  F  + + L+    +++ +
Sbjct: 360 DRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEATLQAMDEKLRKW 415

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} Length = 375

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

 Score = 70.0 bits (170), Expect = 1e-14
 Identities = 35/207 (16%), Positives = 78/207 (37%), Gaps = 20/207 (9%)

Query: 32  IAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91
           +   AKK    +I++EVY  L + +     + V      ++ +   SK   + G R+G+L
Sbjct: 186 LVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYL 245

Query: 92  VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETAD 151
           ++S+                 +   +            +     +  +       R+   
Sbjct: 246 ISSEKVATAVS---------KIQSHTTSCINTVAQYAALKALEVDNSYMVQTFKERKNFV 296

Query: 152 KCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITV 211
               +   +  +    +PEG+ ++  K+          D++F  +L +E+ V ++PG   
Sbjct: 297 VERLKKMGVKFV----EPEGAFYLFFKVR-------GDDVKFCERLLEEKKVALVPGSAF 345

Query: 212 GLKDWLRITFAVEPSALENGLGRMKAF 238
               ++R++FA     L   L R++ F
Sbjct: 346 LKPGFVRLSFATSIERLTEALDRIEDF 372

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} Length = 428

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

 Score = 67.3 bits (163), Expect = 1e-13
 Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 5/90 (5%)

Query: 153 CCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLE-GINSDMEFALKLAKEESVIVLPGITV 211
                 E+  I C K     +F  + L   L E   +S+M     +  +  + V PG + 
Sbjct: 335 HFTNGLEVVGIKCLK-NNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSF 393

Query: 212 GL--KDWLRITFA-VEPSALENGLGRMKAF 238
                 W R+ FA ++   ++  L R++ F
Sbjct: 394 ECQEPGWFRVCFANMDDGTVDIALARIRRF 423

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} Length = 394

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

 Score = 63.7 bits (153), Expect = 2e-12
 Identities = 13/88 (14%), Positives = 22/88 (25%), Gaps = 7/88 (7%)

Query: 153 CCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG 212
                   P I  P   EG+    +                   +  +  +    G   G
Sbjct: 307 KDFFEVNHPEIKAPL-IEGTYLQWIDFR----ALKMDHKAMEEFMIHKAQIFFDEGYIFG 361

Query: 213 L--KDWLRITFAVEPSALENGLGRMKAF 238
                + RI  A   S ++  L R+   
Sbjct: 362 DGGIGFERINLAAPSSVIQESLERLNKA 389

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} Length = 382

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

 Score = 62.1 bits (149), Expect = 8e-12
 Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 9/105 (8%)

Query: 136 EEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFAL 195
            E +  + D  R+  D   + L E      P   EG+ F++V  +         D+EF  
Sbjct: 281 PEHYLALPDFYRQKRDILVNALNESRLEILP--CEGTYFLLVDYS---AVSTLDDVEFCQ 335

Query: 196 KLAKEESVIVLPGITVGL----KDWLRITFAVEPSALENGLGRMK 236
            L +E  V  +P             +R+ FA + S L     R++
Sbjct: 336 WLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAERLR 380

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} Length = 361

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

 Score = 59.9 bits (143), Expect = 4e-11
 Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 6/88 (6%)

Query: 153 CCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG 212
             D++         + P+ +    + L          D      L ++E V ++PG T G
Sbjct: 273 IADKMNAAFPELNWQIPQSTYLAWLDLR----PLNIDDNALQKALIEQEKVAIMPGYTYG 328

Query: 213 L--KDWLRITFAVEPSALENGLGRMKAF 238
              + ++R+      S LE G+  +   
Sbjct: 329 EEGRGFVRLNAGCPRSKLEKGVAGLINA 356

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} Length = 420

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

 Score = 59.8 bits (143), Expect = 4e-11
 Identities = 20/99 (20%), Positives = 44/99 (44%), Gaps = 12/99 (12%)

Query: 153 CCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG 212
             +   +IP +   K  EG +F+ + L     EG ++      + AK + V  +PG    
Sbjct: 326 LEEYFSDIPGVKWVK-SEGGLFIWLTLP----EGFDT--WEMFEYAKRKKVFYVPGRVFK 378

Query: 213 LKD----WLRITFAVEPSA-LENGLGRMKAFYDRHAEKQ 246
           + D     +R++F + P   +  G+ R++     + +++
Sbjct: 379 VYDEPSPSMRLSFCLPPDEKIVEGIKRLREVVLEYGKEK 417

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} Length = 418

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

 Score = 59.8 bits (143), Expect = 5e-11
 Identities = 14/106 (13%), Positives = 32/106 (30%), Gaps = 14/106 (13%)

Query: 147 RETADKCCDRLKEIPCITCPKKPEGSMFVMV-------KLNYSLLEGINSDMEFALKLAK 199
              A +             P  P+G  F++        K++ +       D  F   + K
Sbjct: 309 ELMAKRDYMASFLAEVGMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTK 368

Query: 200 EESVIVLPGITVGL-------KDWLRITFAVEPSALENGLGRMKAF 238
              +  +P             +D++R  F  +   L+     ++ +
Sbjct: 369 SVGLQGIPPSAFYSEPNKHLGEDFVRYCFFKKDENLQKAAEILRKW 414

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} Length = 412

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

 Score = 58.1 bits (139), Expect = 2e-10
 Identities = 29/208 (13%), Positives = 65/208 (31%), Gaps = 35/208 (16%)

Query: 32  IAETAKKLGIMVIANEVYGHLAFGNTPFVS------MGVFGSIVPLLTLGSISKRGIVPG 85
           I +       + + +  Y   A G+    +      +    ++ P+    S +K   + G
Sbjct: 201 IVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYG 260

Query: 86  LRLGWLVTSDP----NGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTE-----E 136
            R+G    +      N  ++ +      KI  +  S+P  +    V ++LE  E      
Sbjct: 261 ERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWH 320

Query: 137 EFFSKIIDILRETADKCCDRLKEI--PCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFA 194
           +    +   + +      D L ++  P        +  MF    L            +  
Sbjct: 321 KDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGL----------TPQMV 370

Query: 195 LKLAKEESVIVLPGITVGLKDWLRITFA 222
            +L +  +V ++           R + A
Sbjct: 371 KRLEETHAVYLVASG--------RASIA 390

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} Length = 412

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

 Score = 54.6 bits (130), Expect = 2e-09
 Identities = 32/212 (15%), Positives = 56/212 (26%), Gaps = 28/212 (13%)

Query: 21  GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVF---GSIVPLLTLGSI 77
           G+  +      IA   K+  +    +  Y   A GN    +  +         L    S 
Sbjct: 197 GTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSF 256

Query: 78  SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQI-----LE 132
           SK   +   R+G L             +    KI     S+P       V +      L 
Sbjct: 257 SKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELF 316

Query: 133 KTEEEFFSKIIDILRETADKCCDRLKEIPCITCPK--KPEGSMFVMVKLNYSLLEGINSD 190
                    + D +     +   RL+ +           +  MF    L          +
Sbjct: 317 HEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGL----------N 366

Query: 191 MEFALKLAKEESVIVLPGITVGLKDWLRITFA 222
            +    L  ++ + +LP          RI   
Sbjct: 367 PKQVEYLINQKHIYLLPSG--------RINMC 390

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} Length = 389

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

 Score = 54.4 bits (129), Expect = 3e-09
 Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 16/96 (16%)

Query: 153 CCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKE-----ESVIVLP 207
              +  E   +    KP G+ ++  +L       +    EFA  +  +     E+ +V P
Sbjct: 294 TVLKKLEEHGLKRFTKPSGAFYITAEL------PVEDAEEFARWMLTDFNMDGETTMVAP 347

Query: 208 GITVGL-----KDWLRITFAVEPSALENGLGRMKAF 238
                L     K  +RI   +E   L   +  +   
Sbjct: 348 LRGFYLTPGLGKKEIRIACVLEKDLLSRAIDVLMEG 383

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} Length = 396

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

 Score = 53.1 bits (126), Expect = 7e-09
 Identities = 31/212 (14%), Positives = 56/212 (26%), Gaps = 27/212 (12%)

Query: 20  VGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVS--MGVFGSIVPLLTLGSI 77
            G   +      +A+ + + G + + +  Y   A G                 L+   S 
Sbjct: 185 TGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSY 244

Query: 78  SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTE-- 135
           SK   +   R+G       +    D              S+P       V  IL      
Sbjct: 245 SKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALR 304

Query: 136 ---EEFFSKIIDILRETADKCCDRLKEIPCITCPK--KPEGSMFVMVKLNYSLLEGINSD 190
              E+  + +   ++       + L+E            +  MF    L           
Sbjct: 305 AIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLT---------- 354

Query: 191 MEFALKLAKEESVIVLPGITVGLKDWLRITFA 222
            E  L+L +E  V  +           R+  A
Sbjct: 355 KEQVLRLREEFGVYAVASG--------RVNVA 378

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} Length = 368

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

 Score = 53.2 bits (126), Expect = 7e-09
 Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 16/105 (15%)

Query: 138 FFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKL 197
           F+  + +  R   D     L+ +  +     PEG+ F+M +L            + A +L
Sbjct: 275 FYEALREGYRRRRDLLAGGLRAM-GLRVYV-PEGTYFLMAEL---------PGWD-AFRL 322

Query: 198 AKEESVIVLPGITVGL----KDWLRITFAVEPSALENGLGRMKAF 238
            +E  V ++P     L    KD  R  F      L   L R+   
Sbjct: 323 VEEARVALIPASAFYLEDPPKDLFRFAFCKTEEELHLALERLGRV 367

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} Length = 354

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

 Score = 49.4 bits (116), Expect = 1e-07
 Identities = 24/165 (14%), Positives = 52/165 (31%), Gaps = 19/165 (11%)

Query: 74  LGSISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEK 133
           L ++SK   + GLR G+ + ++    L            +      +T +     Q L  
Sbjct: 207 LRTLSKAFALAGLRCGFTLANEEVINLLMK---------VIAPYPLSTPVADIAAQALSP 257

Query: 134 TEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEF 193
                  + +  +    +     LKEIPC+        + +++ +          +    
Sbjct: 258 QGIVAMRERVAQIIAEREYLIAALKEIPCVEQVF-DSETNYILARFK--------ASSAV 308

Query: 194 ALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAF 238
              L  +  ++        L   LRIT        +  +  ++A 
Sbjct: 309 FKSLWDQGIILRDQNKQPSLSGCLRITVGT-REESQRVIDALRAE 352

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} Length = 397

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

 Score = 49.2 bits (116), Expect = 1e-07
 Identities = 27/200 (13%), Positives = 49/200 (24%), Gaps = 27/200 (13%)

Query: 32  IAETAKKLGIMVIANEVYGHLAFGNTPFVS--MGVFGSIVPLLTLGSISKRGIVPGLRLG 89
           + E  K   ++   +  Y     G          +  + +P L   S SK   + G R+G
Sbjct: 198 VIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVG 257

Query: 90  WLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTE-----EEFFSKIID 144
            L     +       +           S P  F    V  +L              ++  
Sbjct: 258 GLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRT 317

Query: 145 ILRETADKCCDRLKEI--PCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEES 202
            +     +    L              +  MF    L                +L +E  
Sbjct: 318 RILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGL----------SAAQVDRLREEFG 367

Query: 203 VIVLPGITVGLKDWLRITFA 222
           V ++           R+  A
Sbjct: 368 VYLIASG--------RMCVA 379

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} Length = 401

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

 Score = 48.1 bits (113), Expect = 3e-07
 Identities = 30/202 (14%), Positives = 54/202 (26%), Gaps = 28/202 (13%)

Query: 31  PIAETAKKLGIMVIANEVYGHLAFGNTPFVSMG---VFGSIVPLLTLGSISKRGIVPGLR 87
            +A   KK  ++   +  Y   A G+    +          + ++   S +K   + G R
Sbjct: 199 ELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGER 258

Query: 88  LGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTE-----EEFFSKI 142
            G       +             +   + S+P          IL   E           +
Sbjct: 259 AGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGM 318

Query: 143 IDILRETADKCCDRLKEI--PCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKE 200
            D +     +    LK+            +  MF    L            E   +L KE
Sbjct: 319 ADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLK----------PEQVERLTKE 368

Query: 201 ESVIVLPGITVGLKDWLRITFA 222
            S+ +            RI+ A
Sbjct: 369 FSIYMTKDG--------RISVA 382

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} Length = 394

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.2 bits (103), Expect = 7e-06
 Identities = 25/200 (12%), Positives = 53/200 (26%), Gaps = 27/200 (13%)

Query: 32  IAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSI--VPLLTLGSISKRGIVPGLRLG 89
           IA   +K G + + +  Y     G     +     +     +L   S SK   +   R G
Sbjct: 194 IASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERTG 253

Query: 90  WLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQI-----LEKTEEEFFSKIID 144
            L+    +   ++        +     S P       V  +     L          +  
Sbjct: 254 CLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRS 313

Query: 145 ILRETADKCCDRLKEIPCITCPK--KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEES 202
            +    ++    L+++              MF  +              E   ++ +E  
Sbjct: 314 GMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGATP----------EQVKRIKEEFG 363

Query: 203 VIVLPGITVGLKDWLRITFA 222
           + ++           RI  A
Sbjct: 364 IYMVGDS--------RINIA 375

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	246
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	100.0
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	100.0
d1bw0a_	412	Tyrosine aminotransferase (TAT) {Trypanosoma cruzi	100.0
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	100.0
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	100.0
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	100.0
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	100.0
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	100.0
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	100.0
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	100.0
d1w7la_	418	Kynurenine--oxoglutarate transaminase I {Human (Ho	100.0
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	100.0
d1vp4a_	420	Putative aminotransferase TM1131 {Thermotoga marit	100.0
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	100.0
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	100.0
d1u08a_	382	Putative methionine aminotransferase YdbL {Escheri	100.0
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	100.0
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	100.0
d1fg7a_	354	Histidinol-phosphate aminotransferase HisC {Escher	100.0
d1yaaa_	412	Aspartate aminotransferase, AAT {Baker's yeast (Sa	100.0
d7aata_	401	Aspartate aminotransferase, AAT {Chicken (Gallus g	100.0
d1ajsa_	412	Aspartate aminotransferase, AAT {Pig (Sus scrofa),	99.98
d2q7wa1	396	Aspartate aminotransferase, AAT {Escherichia coli	99.97
d2hoxa1	425	Alliinase {Garlic (Allium sativum) [TaxId: 4682]}	99.97
d2f8ja1	334	Histidinol-phosphate aminotransferase HisC {Thermo	99.97
d3tata_	397	Aromatic aminoacid aminotransferase, AroAT {Escher	99.97
d2ay1a_	394	Aromatic aminoacid aminotransferase, AroAT {Paraco	99.97
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	99.9
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	99.79
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	99.78
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	99.75
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	99.71
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	99.69
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	99.67
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	99.65
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	99.64
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	99.63
d1cs1a_	384	Cystathionine gamma-synthase, CGS {Escherichia col	99.62
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	99.62
d1ibja_	380	Cystathionine beta-lyase, CBL {Thale cress (Arabid	99.61
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	99.59
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.59
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	99.58
d1qgna_	398	Cystathionine gamma-synthase, CGS {Common tobacco	99.58
d1gc0a_	392	Methionine gamma-lyase, MGL {Pseudomonas putida [T	99.56
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	99.56
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	99.55
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	99.52
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	99.5
d1n8pa_	393	Cystathionine gamma-lyase (CYS3) {Baker's yeast (S	99.5
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	99.48
d2ctza1	421	O-acetyl-L-homoserine sulfhydrylase {Thermus therm	99.46
d1e5ea_	394	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.46
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	99.46
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	99.44
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	99.44
d1pffa_	331	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.41
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	99.37
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	99.37
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	99.35
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	99.35
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	99.34
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	99.32
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	99.3
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	99.29
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	99.23
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	99.21
d1dfoa_	416	Serine hydroxymethyltransferase {Escherichia coli	99.18
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	99.17
d1kl1a_	405	Serine hydroxymethyltransferase {Bacillus stearoth	99.15
d1iuga_	348	Subgroup IV putative aspartate aminotransferase {T	99.13
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	99.11
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	99.08
d1pmma_	450	Glutamate decarboxylase beta, GadB {Escherichia co	99.02
d1rv3a_	470	Serine hydroxymethyltransferase {Rabbit (Oryctolag	99.0
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	98.94
d2a7va1	463	Serine hydroxymethyltransferase {Human (Homo sapie	98.93
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	98.91
d1b9ha_	384	3-amino-5-hydroxybenzoic acid synthase (AHBA synth	98.75
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	98.73
d2fnua1	371	Spore coat polysaccharide biosynthesis protein C {	98.68
d1w23a_	360	Phosphoserine aminotransferase, PSAT {Bacillus alc	98.46
d1bjna_	360	Phosphoserine aminotransferase, PSAT {Escherichia	98.44
d1o69a_	374	Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam	98.1
d1wyua1	437	Glycine dehydrogenase (decarboxylating) subunit 1	97.99
d1wyub1	471	Glycine dehydrogenase subunit 2 (P-protein) {Therm	97.88

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=100.00  E-value=1.2e-42  Score=292.69  Aligned_cols=227  Identities=21%  Similarity=0.381  Sum_probs=197.5

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC--cccEEEEc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS--IVPLLTLG   75 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~--~~~~i~~~   75 (246)
                      +.+++.+.++    +++|||||||.++|.+++++|+++|+++|++||+||+|.++.+++..+.++....+  .+++++++
T Consensus       154 ~~l~~~~~~~~~~~~~~~P~NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~i~~~  233 (388)
T d1j32a_         154 EQIRQAITPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCS  233 (388)
T ss_dssp             HHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEE
T ss_pred             HHHHHhCCCCCeEEEECCCCCCCCcccchhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCHHHhCcccccceeEec
Confidence            3455555554    88999999999999999999999999999999999999999998877767655543  35899999


Q ss_pred             ccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 042445           76 SISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCC  154 (246)
Q Consensus        76 s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~  154 (246)
                      ||||.|++||+|+||+++++        ++++.+..... ...+++...|.++...+.. .++++++.++.++++++.+.
T Consensus       234 S~SK~~~~~GlRvG~~~~~~--------~~~~~~~~~~~~~~~~~~~~~q~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~  304 (388)
T d1j32a_         234 GFAKTYAMTGWRVGFLAGPV--------PLVKAATKIQGHSTSNVCTFAQYGAIAAYEN-SQDCVQEMLAAFAERRRYML  304 (388)
T ss_dssp             ESTTTTTCTTTCCEEEECCH--------HHHHHHHHHHHTTTCSCCHHHHHHHHHHHHS-CSHHHHHHHHHHHHHHHHHH
T ss_pred             CChhhhhcchhHeEEEEECH--------HHHHHHHHhhhhccccccHHHHHHHhhcccc-hHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998        88988876643 4457889999998888875 36789999999999999999


Q ss_pred             HHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHH
Q 042445          155 DRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGR  234 (246)
Q Consensus       155 ~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~  234 (246)
                      +.|++++++. +..|+||+|+|++++...    .++.+++.++++++||.+.||..|+.++++|++++.+++++++++++
T Consensus       305 ~~l~~~~g~~-~~~p~gg~~l~~~l~~~~----~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~Rls~~~~~e~l~~al~r  379 (388)
T d1j32a_         305 DALNAMPGLE-CPKPDGAFYMFPSIAKTG----RSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYATDLDTIKRGMER  379 (388)
T ss_dssp             HHHHTCTTCB-CCCCCBTTEECCBCGGGT----CCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECCSCHHHHHHHHHH
T ss_pred             HHHHhCCCCE-ecCCCceEEEEEECCCCC----CCHHHHHHHHHHhCCEEEEeccccCCCCeEEEEEeCCHHHHHHHHHH
Confidence            9999988887 678999999999887543    25778888899999999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 042445          235 MKAFYDRH  242 (246)
Q Consensus       235 l~~~~~~~  242 (246)
                      |+++++.+
T Consensus       380 l~~~l~~l  387 (388)
T d1j32a_         380 LEKFLHGI  387 (388)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99999864

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=9.3e-42  Score=287.26  Aligned_cols=228  Identities=21%  Similarity=0.360  Sum_probs=194.8

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEcc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGS   76 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s   76 (246)
                      |.+++.++++    +++|||||||.++|.+++++|+++|++||++||+||+|.++.+++.++.++..+.. .+++|+++|
T Consensus       150 ~~l~~~~~~~~~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S  229 (388)
T d1gdea_         150 DELKKYVTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNG  229 (388)
T ss_dssp             HHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEE
T ss_pred             HHHHHhCccCCeEEEECCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCCeEEEEeC
Confidence            3455555544    89999999999999999999999999999999999999999988777766666643 568999999


Q ss_pred             cccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHH
Q 042445           77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADKCC  154 (246)
Q Consensus        77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~  154 (246)
                      |||.|++||+|+||+++++        +++..+..... ...+.+.+.|.++..++.++. ..++.+.++.+++++..+.
T Consensus       230 ~SK~~~~~GlR~G~ii~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  301 (388)
T d1gdea_         230 FSKTFAMTGWRLGFVAAPS--------WIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVW  301 (388)
T ss_dssp             STTTTTCGGGCCEEEECCH--------HHHHHHHHHHHTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChhhccCccccEEEEEeec--------cchhhhhhccccccccccccchhhHHHHHhhccchhHHHHHHHHHHHhhhhhh
Confidence            9999999999999999998        88888877644 444778899999999998654 4678888899999999999


Q ss_pred             HHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHH
Q 042445          155 DRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGL  232 (246)
Q Consensus       155 ~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~  232 (246)
                      +.|+.. ++. +..|+||+|+|++++...    .++.+++..+++++||.+.||..|+.  ++++|+|++.+++++++++
T Consensus       302 ~~l~~~-~~~-~~~p~gg~fl~~~l~~~~----~~~~~~~~~ll~e~gV~v~PG~~F~~~~~~~iRis~~~~~e~l~~al  375 (388)
T d1gdea_         302 KRLNEM-GLP-TVKPKGAFYIFPRIRDTG----LTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAM  375 (388)
T ss_dssp             HHHHHT-TCC-CCCCCBTTEECCBCGGGT----CCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHH
T ss_pred             hhhhhc-ccc-ccCCCceEEEEEECCCCC----CCHHHHHHHHHHhCCEEEEechhhCCCCCCEEEEEecCCHHHHHHHH
Confidence            999886 455 568999999999887542    15778888888999999999999976  7899999998899999999


Q ss_pred             HHHHHHHHHHh
Q 042445          233 GRMKAFYDRHA  243 (246)
Q Consensus       233 ~~l~~~~~~~~  243 (246)
                      ++|.+++++++
T Consensus       376 ~rL~~~l~e~k  386 (388)
T d1gdea_         376 DRMERVLKERK  386 (388)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHhcC
Confidence            99999998864

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=100.00  E-value=1.1e-40  Score=282.84  Aligned_cols=229  Identities=29%  Similarity=0.474  Sum_probs=190.0

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccc----cCCcccEEEEcccccccccCCce
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGV----FGSIVPLLTLGSISKRGIVPGLR   87 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~----~~~~~~~i~~~s~sK~~~~~g~r   87 (246)
                      +++|||||||.+++.+++++|+++|++||++||+||+|.++.+++..+.+...    .....++++++|+||.|+++|+|
T Consensus       179 ~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~G~R  258 (412)
T d1bw0a_         179 IVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGWR  258 (412)
T ss_dssp             EEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGGC
T ss_pred             ccccccccccccchhhhccccccccccCCeeeechhhHHHhccCCCCCccccccccccccccccccccccCccCccCCCC
Confidence            88999999999999999999999999999999999999999998754433222    23345789999999999999999


Q ss_pred             EEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccc
Q 042445           88 LGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPK  167 (246)
Q Consensus        88 ~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~  167 (246)
                      +||+++++.....  ..++...........+.+...|.++...+....+.++.+.++.++++++.+.+.|.+.+|+. +.
T Consensus       259 vG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~g~~-~~  335 (412)
T d1bw0a_         259 LGWLLYVDPHGNG--PSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLA-PT  335 (412)
T ss_dssp             CEEEEEECTTCSC--HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEE-EC
T ss_pred             cccccccchhhcc--hhhhhhhccccccccCCchhhhhhcccccccccccccccccchhHHHHHHHHHHHHHhcCce-ec
Confidence            9999998732111  13444444444444466677777777776655678999999999999999999998877887 57


Q ss_pred             CCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHHHHHHh
Q 042445          168 KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       168 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~~~~~  243 (246)
                      .|+||+|+|++++.....+..++.+++.++++++||.+.||+.|+.++|+|||++.+++++++++++|++++++++
T Consensus       336 ~p~gg~~l~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~g~iRis~~~~~e~l~eal~Rl~~~l~~~~  411 (412)
T d1bw0a_         336 MPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTTRPVEVYREAVERIKAFCQRHA  411 (412)
T ss_dssp             CCCBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCSCHHHHHHHHHHHHHHHHHHB
T ss_pred             CCCCceEEEEeCChhhcCCCCCHHHHHHHHHHhCCEEEEeccccCCCCeEEEEEcCCHHHHHHHHHHHHHHHHhcC
Confidence            8999999999998655445557889999999999999999999999999999999999999999999999998875

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=5.4e-41  Score=283.27  Aligned_cols=231  Identities=25%  Similarity=0.372  Sum_probs=189.5

Q ss_pred             hhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccc
Q 042445            3 LINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSIS   78 (246)
Q Consensus         3 ~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~s   78 (246)
                      .+++.+.++    +++|||||||.+++.+++++|+++|++|+++||+||+|.++.+++... +...+...+++|+++|||
T Consensus       158 ~~~~~~~~~~~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~-~~~~~~~~~~vi~~~S~S  236 (395)
T d1xi9a_         158 DIRKKITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHI-SPGSLTKDVPVIVMNGLS  236 (395)
T ss_dssp             HHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCC-CHHHHCSSSCEEEEEEST
T ss_pred             HHHHhhcccccEEEecCCCCCccchhhHHHHHHHHhhhhhcCeeEEecccccccccccccc-chhhcCCCCCEEEEeCcc
Confidence            344444443    899999999999999999999999999999999999999999876433 444455667899999999


Q ss_pred             cccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhh
Q 042445           79 KRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLK  158 (246)
Q Consensus        79 K~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~  158 (246)
                      |.|++||+|+||+++++......  .+.+..........+++.++|.++..++.. .+.|+++.++.++++++.+.+.|+
T Consensus       237 K~~~~~GlRvG~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~  313 (395)
T d1xi9a_         237 KVYFATGWRLGYMYFVDPENKLS--EVREAIDRLARIRLCPNTPAQFAAIAGLTG-PMDYLKEYMKKLKERRDYIYKRLN  313 (395)
T ss_dssp             TTTCCGGGCCEEEEEECTTCTTH--HHHHHHHHHHHHTCCSCSHHHHHHHHHHHS-CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccchhhcEeeEecCHHHHHH--HHHHHHHHhhcCCCCcCHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998876433331  222222222334447899999999988875 467999999999999999999999


Q ss_pred             cCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHHH
Q 042445          159 EIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMK  236 (246)
Q Consensus       159 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l~  236 (246)
                      +++++. +..|+||+|+|++++...   ..++.+++.++++++||.+.||..|+.  ++|+||+++.+++++++++++|.
T Consensus       314 ~~~~~~-~~~p~gg~~~~~~l~~~~---~~~~~~~~~~ll~~~gV~v~PG~~Fg~~~~~~~Ris~~~~~e~l~eal~rl~  389 (395)
T d1xi9a_         314 EIPGIS-TTKPQGAFYIFPKIEVGP---WKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLPPIEILEEAMDRFE  389 (395)
T ss_dssp             TSTTEE-CCCCCBSSEECCEECSCS---CSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHH
T ss_pred             hCCCce-ecCCCeeEEEeEECCCCC---CCCHHHHHHHHHHhCCEEEEcChhhCCCCCCEEEEEecCCHHHHHHHHHHHH
Confidence            987666 578999999999987532   125788889999999999999999986  78999999989999999999999


Q ss_pred             HHHHH
Q 042445          237 AFYDR  241 (246)
Q Consensus       237 ~~~~~  241 (246)
                      +++++
T Consensus       390 ~~l~e  394 (395)
T d1xi9a_         390 KFMKE  394 (395)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            99875

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.8e-41  Score=283.83  Aligned_cols=221  Identities=19%  Similarity=0.305  Sum_probs=184.4

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      |.+++.++++    +++|||||||.++|.+++++|+++|++||++||+||+|.++.+++..+.+...  ..+++++++|+
T Consensus       155 ~~l~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~--~~~~~i~~~s~  232 (382)
T d1b5pa_         155 ERVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRV--APEHTLTVNGA  232 (382)
T ss_dssp             HHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGT--CTTTEEEEEES
T ss_pred             HHHHHhCCCCCeEEEECCCCCCcchhCCHHHHHHHHHHHHHcCeEEEEEccccceecCCCCCCHHHc--CCCCEEEEecc
Confidence            3445555544    88999999999999999999999999999999999999999998766555433  23589999999


Q ss_pred             ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhch--HHHHHHHHHHHHHHHHHHH
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTE--EEFFSKIIDILRETADKCC  154 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~  154 (246)
                      ||.|++||+|+||+++++        ++++.+..... ....++.+.|.++...+....  +.++...++.++++++.+.
T Consensus       233 SK~~~~~GlR~G~~~~~~--------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (382)
T d1b5pa_         233 AKAFAMTGWRIGYACGPK--------EVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLL  304 (382)
T ss_dssp             TTTTTCGGGCCEEEECCH--------HHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhccCcHhheEEEEECH--------HHHHHHHHHHHhcccCcccccccccccccccccchhHHHHHHHHHHHhhhhHHH
Confidence            999999999999999998        88888876643 344678888888877776433  5788889999999999999


Q ss_pred             HHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHH
Q 042445          155 DRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGR  234 (246)
Q Consensus       155 ~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~  234 (246)
                      +.+... ++. +..|+||+|+|++++...     .+...+.+++.++||.+.||..|+.++++|++++.+++++++++++
T Consensus       305 ~~l~~~-g~~-~~~p~gg~~~~~~~~~~~-----~~~~~~~~~l~e~gV~v~PG~~F~~~~~iRis~~~~~e~l~~al~r  377 (382)
T d1b5pa_         305 EGLTAL-GLK-AVRPSGAFYVLMDTSPIA-----PDEVRAAERLLEAGVAVVPGTDFAAFGHVRLSYATSEENLRKALER  377 (382)
T ss_dssp             HHHHHH-TCC-BCCCSBTTEEEEECTTTC-----SSHHHHHHHHHHTTEECEESGGGTCTTEEEEECCSCHHHHHHHHHH
T ss_pred             HHHhhc-CCe-EecCCceEEEeEeCCCCC-----CCHHHHHHHHHHCCEEEEeCcccCCCCeEEEEEcCCHHHHHHHHHH
Confidence            999886 566 578999999999886432     2555566678889999999999999999999999899999999999


Q ss_pred             HHHHH
Q 042445          235 MKAFY  239 (246)
Q Consensus       235 l~~~~  239 (246)
                      |.+++
T Consensus       378 l~~~L  382 (382)
T d1b5pa_         378 FARVL  382 (382)
T ss_dssp             GGGGC
T ss_pred             HHHhC
Confidence            98753

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=100.00  E-value=3.3e-39  Score=272.20  Aligned_cols=220  Identities=15%  Similarity=0.143  Sum_probs=179.8

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccC--CcccEEEEcccccccccCCceEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFG--SIVPLLTLGSISKRGIVPGLRLG   89 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~--~~~~~i~~~s~sK~~~~~g~r~G   89 (246)
                      +++|||||||.++|.+++++|+++|+++|++||+||+|.++.+++..+.+.....  ..++++++.|+||.|+++|+|+|
T Consensus       169 ~l~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~R~g  248 (394)
T d1c7na_         169 LFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMS  248 (394)
T ss_dssp             EEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCE
T ss_pred             EecccccccceeccHHHhhhhhccccccceeEeccccccccccCCccccchhhhhcccccceeecccccccccccccccc
Confidence            8999999999999999999999999999999999999999999876665544433  24689999999999999999999


Q ss_pred             EEEeeCCCCCcchhhHHHHHHHHhhhcCC-CCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc-CCCCcccc
Q 042445           90 WLVTSDPNGILQDSGIVDSIKIFLNISSD-PATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKE-IPCITCPK  167 (246)
Q Consensus        90 ~i~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~  167 (246)
                      |+++++.       .+.+.+......+.. .+...+.++........+.+.++.++.++++++.+.+.++. .+++. +.
T Consensus       249 ~~~~~~~-------~i~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~  320 (394)
T d1c7na_         249 NIIIKNP-------DIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIK-AP  320 (394)
T ss_dssp             EEECCCH-------HHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSB-CC
T ss_pred             cccccCh-------hhhhhhhhhhhhccccccccccchhhhhhhcchhhhhcccccccchhhhhhhhhhhcccccee-ec
Confidence            9999883       555666665544333 33343444433333334788999999999999999999986 55776 57


Q ss_pred             CCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHHHHHHHHHh
Q 042445          168 KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       168 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l~~~~~~~~  243 (246)
                      .|+||+|+|++++...    .++.+++..+++++||.+.||+.|+.  ++++|||++.+++++++++++|++++++++
T Consensus       321 ~p~g~~~~~~~~~~~~----~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~~~e~i~eal~rl~~~l~~Lk  394 (394)
T d1c7na_         321 LIEGTYLQWIDFRALK----MDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAPSSVIQESLERLNKALKDLK  394 (394)
T ss_dssp             CCSBSSEEEEECGGGC----CCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCceeEEEEECCCCC----CCHHHHHHHHHHhCCEEEEcchhhCCCCCCEEEEEEeCCHHHHHHHHHHHHHHHHhcC
Confidence            8999999999987532    15777888888888999999999976  789999999889999999999999998764

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=2.9e-39  Score=270.78  Aligned_cols=208  Identities=23%  Similarity=0.375  Sum_probs=179.6

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      +++|||||||.++|.+++++|+++|++|+++||+||+|.++.+++.....+...+..+++++++|+||.|++||+|+||+
T Consensus       166 ~l~nP~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~G~R~G~~  245 (375)
T d1o4sa_         166 LINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYL  245 (375)
T ss_dssp             EEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEE
T ss_pred             EEeCCCCCccCCCCHHHHHHHHHhHHHcCCceehHhhhccccccccccccccccCCCCCEEEEeechhhccCCccccccc
Confidence            89999999999999999999999999999999999999999988766666555667789999999999999999999999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCC
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPE  170 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~  170 (246)
                      ++++        ++++.+...... ....+...+......+..    +....++.++++++.+.+.|++. |+. +..|+
T Consensus       246 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~r~~~~~~~l~~~-g~~-~~~p~  311 (375)
T d1o4sa_         246 ISSE--------KVATAVSKIQSHTTSCINTVAQYAALKALEV----DNSYMVQTFKERKNFVVERLKKM-GVK-FVEPE  311 (375)
T ss_dssp             ECCH--------HHHHHHHHHHHHHTCSCCHHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHT-TCC-CCCCS
T ss_pred             cccc--------cchhhhhhhhccccccccccchhhhhhhccc----chhhhHHHHHHHHHHHHHHHHhc-Cce-EecCC
Confidence            9999        888888776443 335666666666555543    34556677899999999999987 677 57899


Q ss_pred             CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHHHH
Q 042445          171 GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYD  240 (246)
Q Consensus       171 ~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~~  240 (246)
                      ||+|+|++++.       ++.+++.++++++||.++||..|+.++|+|++++.+++++++++++|+++++
T Consensus       312 gg~f~~~~~~~-------~~~~~~~~ll~~~gV~v~pG~~F~~~g~iRis~~~~~e~l~~al~rl~~~l~  374 (375)
T d1o4sa_         312 GAFYLFFKVRG-------DDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFATSIERLTEALDRIEDFLN  374 (375)
T ss_dssp             BSSEEEEECSS-------CHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCSCHHHHHHHHHHHHHHHT
T ss_pred             ccEEEEEECCC-------CHHHHHHHHHHhCCEEEEEccccCCCCeEEEEEcCCHHHHHHHHHHHHHHhc
Confidence            99999998875       3788899999999999999999999999999999899999999999999874

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=100.00  E-value=5.6e-39  Score=273.74  Aligned_cols=221  Identities=19%  Similarity=0.281  Sum_probs=183.5

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccC----------CcccEEEEccccccc
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFG----------SIVPLLTLGSISKRG   81 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~----------~~~~~i~~~s~sK~~   81 (246)
                      +++|||||||.+++.+++++|+++|+++|++||+||+|.++.|++..+.++..+.          ..+++++++|+||.|
T Consensus       194 ~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~  273 (431)
T d1m7ya_         194 LVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDL  273 (431)
T ss_dssp             EEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSS
T ss_pred             EecCccccccccccccccccccccccccCcceeecccccccccCCCCCCCHHHHhhhcccccccccCceEEEEecCcccc
Confidence            8899999999999999999999999999999999999999999876665543321          235799999999999


Q ss_pred             ccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhch--HHHHHHHHHHHHHHHHHHHHHhhc
Q 042445           82 IVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTE--EEFFSKIIDILRETADKCCDRLKE  159 (246)
Q Consensus        82 ~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~~L~~  159 (246)
                      +++|+|+||+++++        +++............+++..|.++.+.+....  ++++.+.+..++++++.+.+.|++
T Consensus       274 ~~~G~RiG~~~~~~--------~~i~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  345 (431)
T d1m7ya_         274 GLPGFRVGAIYSND--------DMVVAAATKMSSFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQK  345 (431)
T ss_dssp             CCGGGCEEEEEESC--------HHHHHHHHHHGGGSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cCCCCccceeccch--------hhhHHHHHHHhccccccccccchhhhhhccchhhhhhhhhhhhhhhhhhhhhhhhhhc
Confidence            99999999999988        77666555544444677777777777776433  578999999999999999999988


Q ss_pred             CCCCccccCCCCceEEEEEecccccc-CCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeec-ChHHHHHHHHHH
Q 042445          160 IPCITCPKKPEGSMFVMVKLNYSLLE-GINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAV-EPSALENGLGRM  235 (246)
Q Consensus       160 ~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~-~~~~l~~~~~~l  235 (246)
                      . |+. +..|+||+|+|++++..... ...++.+++.++++++||.+.||+.|+.  ++|+|++++. +++++++++++|
T Consensus       346 ~-gi~-~~~p~gg~f~w~~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~F~~~~~~~~Ri~~a~~~e~~l~~al~rL  423 (431)
T d1m7ya_         346 S-GIS-CLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDLAMQRL  423 (431)
T ss_dssp             T-TCE-ECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECSSSCHHHHHHHHHHH
T ss_pred             C-CcE-EecCCceeEEEEECccccccCcccCHHHHHHHHHHHCCEEEEeccccCCCCCCEEEEEeCcCCHHHHHHHHHHH
Confidence            5 777 57899999999998753211 1113556788888899999999999986  7899999985 788999999999


Q ss_pred             HHHHHHH
Q 042445          236 KAFYDRH  242 (246)
Q Consensus       236 ~~~~~~~  242 (246)
                      +++++++
T Consensus       424 ~~~l~~~  430 (431)
T d1m7ya_         424 KAFVGEY  430 (431)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999886

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=100.00  E-value=4.5e-39  Score=273.32  Aligned_cols=219  Identities=19%  Similarity=0.302  Sum_probs=186.6

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCcccccc-CCcccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVF-GSIVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~-~~~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      ++++||||||.++|.+++++|+++|++||++||+||+|.++.+++....++..+ +...+++++.|+||.|++||+|+||
T Consensus       176 ~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~pGlRiG~  255 (418)
T d2r5ea1         176 IINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIGW  255 (418)
T ss_dssp             EEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGGCCEE
T ss_pred             ecCCcCccccccccHHHHHHHhhhhhcCCeeeecccchhhhccCCCccccccccccccceeeeeecCCccccCCCccccc
Confidence            889999999999999999999999999999999999999999987666565554 3467899999999999999999999


Q ss_pred             EEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhch------HHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 042445           91 LVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTE------EEFFSKIIDILRETADKCCDRLKEIPCI  163 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~------~~~~~~~~~~~~~~~~~l~~~L~~~~~~  163 (246)
                      +++++        ++++.+..... ...+++.+.|.++...+....      +.++.+.++.++.+++.+.+.|+++ |+
T Consensus       256 ~~~~~--------~~i~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~  326 (418)
T d2r5ea1         256 AYGPE--------ALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEV-GM  326 (418)
T ss_dssp             EESCH--------HHHHHHHHHHTTTTCSCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             ccccc--------hhhhhhhhcccccccccccchhhhccccccccccccccchhhHHHHHHHHHHhhhhHHhhHhhc-CC
Confidence            99999        99998887644 445778888888877775421      4689999999999999999999998 77


Q ss_pred             ccccCCCCceEEEEEecccc-------ccCCCChHHHHHHHHHhcCeEEecCCCcCC-------CCeEEEEeecChHHHH
Q 042445          164 TCPKKPEGSMFVMVKLNYSL-------LEGINSDMEFALKLAKEESVIVLPGITVGL-------KDWLRITFAVEPSALE  229 (246)
Q Consensus       164 ~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-------~~~iRls~~~~~~~l~  229 (246)
                      . +..|+||+|+|++++...       .....++.+++..+++++||.+.||..|+.       ++|+|+|++.++++++
T Consensus       327 ~-~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~g~~~iRis~~~~~e~l~  405 (418)
T d2r5ea1         327 N-PTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFKKDENLQ  405 (418)
T ss_dssp             E-EEECSBSSEEEEECGGGSTTCCGGGCCCSSHHHHHHHHHHHHHSEECBCGGGGSCGGGHHHHTTEEEEECCSCHHHHH
T ss_pred             c-ccCCCceeEEEEEcccccccccchhcccccCHHHHHHHHHHHCCEEEeCchhhCCCCCccCCCCEEEEEecCCHHHHH
Confidence            6 578999999999986421       012235778889999999999999999975       4899999988999999


Q ss_pred             HHHHHHHHHHH
Q 042445          230 NGLGRMKAFYD  240 (246)
Q Consensus       230 ~~~~~l~~~~~  240 (246)
                      +++++|++++.
T Consensus       406 ~a~~rl~~~lg  416 (418)
T d2r5ea1         406 KAAEILRKWKG  416 (418)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHc
Confidence            99999998863

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=100.00  E-value=1.8e-38  Score=268.38  Aligned_cols=218  Identities=23%  Similarity=0.381  Sum_probs=189.0

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      ++++||||||.++|.+++++|+++|++||++||+||+|.++.+++....++...+..+++++++|+||.+ +||+|+||+
T Consensus       176 ~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~G~RiG~~  254 (403)
T d1wsta1         176 TVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDYGRVIYLGTFSKIL-APGFRIGWV  254 (403)
T ss_dssp             ECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGGCSSSCEEEEEESTTTT-CGGGCCEEE
T ss_pred             cccccCCCCCccCCHHHHHHHHHHHHhcCceeccccchhheecCCCCCCcccccCCCCcEEEEcccccee-cCccccccc
Confidence            6789999999999999999999999999999999999999999987777777777778999999999997 599999999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhhc-CC-CCcccc
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADKCCDRLKE-IP-CITCPK  167 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~-~~-~~~~~~  167 (246)
                      ++++        ++++.+..... .+.+.+...|.+...++.... +.++++.++.++++++.+.+.|.+ ++ ++. +.
T Consensus       255 i~~~--------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~-~~  325 (403)
T d1wsta1         255 AAHP--------HLIRKMEIAKQSIDLCTNTFGQAIAWKYVENGYLDEHIPKIIEFYKPRRDAMLEALEEYMPEGVE-WT  325 (403)
T ss_dssp             EECH--------HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCE-EC
T ss_pred             ccch--------HHHHHHHHHHhhhccccccchhhhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhccCCeE-Ee
Confidence            9998        99988877643 455788888888888877654 688999999999999999999987 33 455 67


Q ss_pred             CCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC----CCeEEEEeec-ChHHHHHHHHHHHHHHHHH
Q 042445          168 KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL----KDWLRITFAV-EPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       168 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----~~~iRls~~~-~~~~l~~~~~~l~~~~~~~  242 (246)
                      .|+||+|+|++++...      +.+.+.++|.++||.+.||+.|+.    ++++||+++. +++++++++++|.+++++.
T Consensus       326 ~p~gg~~~~~~~~~~~------~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRi~~~~~~~~~l~~al~rl~~~l~~~  399 (403)
T d1wsta1         326 KPEGGMFVRVTLPEGI------DTKLMMERAVAKGVAYVPGEAFFVHRDKKNTMRLNFTYVPEETIREGVRRLAETIKEE  399 (403)
T ss_dssp             CCSBSSEEEEECCTTC------CTTTTHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSSSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCceeEEEEECCCCC------CHHHHHHHHHHCCEEEEechhhcCCCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHHH
Confidence            8999999999998643      444556678889999999998875    6899999985 8999999999999999988


Q ss_pred             hhc
Q 042445          243 AEK  245 (246)
Q Consensus       243 ~~~  245 (246)
                      .++
T Consensus       400 ~k~  402 (403)
T d1wsta1         400 MKR  402 (403)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            765

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-38  Score=270.81  Aligned_cols=218  Identities=18%  Similarity=0.320  Sum_probs=187.5

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccC-CcccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFG-SIVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      ++++||||||.++|.+++++|+++|+++|+++|+||+|.++.+++..+.++..+. ..++++++.|+||.|++||+|+||
T Consensus       176 ~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pG~RvG~  255 (418)
T d1w7la_         176 VLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWKVGW  255 (418)
T ss_dssp             EEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGGCCEE
T ss_pred             eccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHccccccccceecccCccccCCCCcccc
Confidence            8899999999999999999999999999999999999999999887666666664 356899999999999999999999


Q ss_pred             EEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhch------HHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 042445           91 LVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTE------EEFFSKIIDILRETADKCCDRLKEIPCI  163 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~------~~~~~~~~~~~~~~~~~l~~~L~~~~~~  163 (246)
                      +++++        +++..+..... ...+++.+.|.++..++....      ..++...++.++++++.+.+.|+++ |+
T Consensus       256 ~v~~~--------~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~  326 (418)
T d1w7la_         256 VLGPD--------HIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSV-GL  326 (418)
T ss_dssp             EECCH--------HHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT-TC
T ss_pred             cccch--------hhhhhhccccccccccccchhhHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhhhc-CC
Confidence            99999        99999888754 355789999999998887533      3678899999999999999999987 67


Q ss_pred             ccccCCCCceEEEEEecccc-----c---cCCCChHHHHHHHHHhcCeEEecCCCcCC-------CCeEEEEeecChHHH
Q 042445          164 TCPKKPEGSMFVMVKLNYSL-----L---EGINSDMEFALKLAKEESVIVLPGITVGL-------KDWLRITFAVEPSAL  228 (246)
Q Consensus       164 ~~~~~~~~g~~~~~~~~~~~-----~---~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-------~~~iRls~~~~~~~l  228 (246)
                      . +..|+||+|+|++++...     +   .+..++.+++.++|+++||.+.||+.|+.       ++|||+|++.+++++
T Consensus       327 ~-~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~~~~~iRis~~~~~~~l  405 (418)
T d1w7la_         327 K-PLIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEATL  405 (418)
T ss_dssp             E-EEECSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCCCHHHH
T ss_pred             c-ccCCCceeEEEEECcccccccchhccccccccHHHHHHHHHHHCCEEEEcchhhcCCCccCCCCCEEEEEEcCCHHHH
Confidence            7 578999999999986311     0   11123678899999999999999999974       589999998899999


Q ss_pred             HHHHHHHHHHH
Q 042445          229 ENGLGRMKAFY  239 (246)
Q Consensus       229 ~~~~~~l~~~~  239 (246)
                      ++++++|+++.
T Consensus       406 ~~a~~rl~~~~  416 (418)
T d1w7la_         406 QAMDEKLRKWK  416 (418)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998875

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=100.00  E-value=2.3e-38  Score=269.73  Aligned_cols=221  Identities=18%  Similarity=0.288  Sum_probs=182.1

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCcccccc--------CCcccEEEEccccccccc
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVF--------GSIVPLLTLGSISKRGIV   83 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~--------~~~~~~i~~~s~sK~~~~   83 (246)
                      +++|||||||.+++.+++++|+++|++||++||+||+|.++.|++..+.++..+        ...+++++++||||.|++
T Consensus       193 ~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~  272 (428)
T d1iaya_         193 ILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGL  272 (428)
T ss_dssp             EEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSC
T ss_pred             EEccCCCcccccccccccchhheeeccCcEEEEecccccccccCcccccccccccchhhccccccceEEEEecCCCcccC
Confidence            889999999999999999999999999999999999999999988766665433        234689999999999999


Q ss_pred             CCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhch--HHHHHHHHHHHHHHHHHHHHHhhcCC
Q 042445           84 PGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTE--EEFFSKIIDILRETADKCCDRLKEIP  161 (246)
Q Consensus        84 ~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~  161 (246)
                      +|+|+||++++++       .+.+.++...... .++...|.++.+.+....  +.++++.++.++++++.+.+.|+.. 
T Consensus       273 ~GlRiG~~~~~~~-------~l~~~~~~~~~~~-~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~l~~r~~~~~~~L~~~-  343 (428)
T d1iaya_         273 PGFRVGIIYSFND-------DVVNCARKMSSFG-LVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV-  343 (428)
T ss_dssp             GGGCEEEEEESCH-------HHHHHHHHHHTTS-CCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             CCccccccccccc-------chhhhhhhhhccc-ccccccccchhhhhhhhccccccccccccccchhHHHHHHHHHhC-
Confidence            9999999999772       5566665555443 677888888777776433  5789999999999999999999875 


Q ss_pred             CCccccCCCCceEEEEEecccccc-CCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeec-ChHHHHHHHHHHHH
Q 042445          162 CITCPKKPEGSMFVMVKLNYSLLE-GINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAV-EPSALENGLGRMKA  237 (246)
Q Consensus       162 ~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~-~~~~l~~~~~~l~~  237 (246)
                      |+. +..|+||+|+|++++..... ...++.+++..+++++||.+.||..|+.  ++|+|+|++. +++++++++++|++
T Consensus       344 gi~-~~~p~gg~f~w~~l~~~~~~~~~~~~~~l~~~Ll~~~gV~v~PG~~F~~~~~g~~Ris~a~~~~~~l~~al~Rl~~  422 (428)
T d1iaya_         344 GIK-CLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGTVDIALARIRR  422 (428)
T ss_dssp             TCC-BCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECSSSCHHHHHHHHHHHHH
T ss_pred             CCE-EecCCcceEEEEECccccccCCCCCHHHHHHHHHHhCCEEEEcchhcCCCCCCEEEEEeCCCCHHHHHHHHHHHHH
Confidence            777 57899999999998753211 1113456778888899999999999986  7999999985 77889999999999


Q ss_pred             HHHHH
Q 042445          238 FYDRH  242 (246)
Q Consensus       238 ~~~~~  242 (246)
                      ++...
T Consensus       423 ~l~~~  427 (428)
T d1iaya_         423 FVGVE  427 (428)
T ss_dssp             HHHTT
T ss_pred             HHhhc
Confidence            98654

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=6.3e-38  Score=266.39  Aligned_cols=218  Identities=20%  Similarity=0.306  Sum_probs=185.9

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      ++++||||||.+++.+++++|+++|++|++++|+||+|.++.+++....+.......+++++++|+||.+ ++|+|+||+
T Consensus       188 ~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~s~sk~~-~~G~RiG~~  266 (420)
T d1vp4a_         188 VVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVL-APGLRIGMV  266 (420)
T ss_dssp             EECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTT-CGGGCEEEE
T ss_pred             EecCCCCccchhhhhhhhhhhhhhhhcccccccccchhhhccccCcccccccccccccceeEEecccccc-ccccccccc
Confidence            6889999999999999999999999999999999999999999886666666666677899999999995 799999999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhhc----CCCCcc
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADKCCDRLKE----IPCITC  165 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~  165 (246)
                      ++++        ++++.+..... ...+.+.+.|.+++.++.... .+++++.++.++++++.+.+.|++    ++|+. 
T Consensus       267 ~~~~--------~~i~~l~~~~~~~~~~~~~~~q~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~g~~-  337 (420)
T d1vp4a_         267 AGSK--------EFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVK-  337 (420)
T ss_dssp             ECCH--------HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCE-
T ss_pred             cccc--------hhhhhhhhhhhhccccCchhhhhhhhhhcccccccccchhHHHHhhhhcccchhhhhhhhccCCCcE-
Confidence            9998        99999887744 345789999999998888655 578888888999999998888875    45676 


Q ss_pred             ccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC----CCeEEEEeec-ChHHHHHHHHHHHHHHH
Q 042445          166 PKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL----KDWLRITFAV-EPSALENGLGRMKAFYD  240 (246)
Q Consensus       166 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----~~~iRls~~~-~~~~l~~~~~~l~~~~~  240 (246)
                      +..|+||+|+|++++...     ++.++ .++|+++||.+.||..|+.    .+++|+|++. +++++++++++|.++++
T Consensus       338 ~~~p~gg~f~~~~~~~~~-----d~~~~-~~~l~~~gV~v~PG~~F~~~~~~~~~iRls~~~~~~e~l~~a~~rL~~~l~  411 (420)
T d1vp4a_         338 WVKSEGGLFIWLTLPEGF-----DTWEM-FEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKRLREVVL  411 (420)
T ss_dssp             ECCCSBSSEEEEECCTTC-----CTTTT-HHHHHHHTEECEEGGGGCTTCCCCSEEEEECSSSCHHHHHHHHHHHHHHHH
T ss_pred             EecCCceEEEEEECCCCC-----CHHHH-HHHHHHCCeEEEechhhCCCCCCCCEEEEEeCcCCHHHHHHHHHHHHHHHH
Confidence            578999999999997532     33444 5578899999999999975    5799999985 88999999999999999


Q ss_pred             HHhhc
Q 042445          241 RHAEK  245 (246)
Q Consensus       241 ~~~~~  245 (246)
                      ++.++
T Consensus       412 ~~~~~  416 (420)
T d1vp4a_         412 EYGKE  416 (420)
T ss_dssp             HHHHH
T ss_pred             HhhHh
Confidence            88753

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=4e-37  Score=258.86  Aligned_cols=214  Identities=20%  Similarity=0.268  Sum_probs=179.1

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      +++|||||||.++|.+++++|+++|++||++||+||+|.++.+++..+....  ...++++++.|+||.+++||+|+||+
T Consensus       164 ~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~--~~~~~~~v~~s~sK~~~~~GlRiG~~  241 (389)
T d2gb3a1         164 VLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALS--IESDKVVVIDSVSKKFSACGARVGCL  241 (389)
T ss_dssp             EEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGG--SCCTTEEEEEESTTTTTCGGGCCEEE
T ss_pred             EeCCCCccccccchHHHHHHHHhhcccCCEEEEEeccccccccccccccccc--cccccccccccccccccCcccceeee
Confidence            8899999999999999999999999999999999999999999875443332  23458889999999999999999999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG  171 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~  171 (246)
                      +++++       .+...+........+.+.+.|.++..++.. .+.++++.++.++++++.+.+.|+++++.. +..|++
T Consensus       242 ~~~~~-------~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~-~~~p~~  312 (389)
T d2gb3a1         242 ITRNE-------ELISHAMKLAQGRLAPPLLEQIGSVGLLNL-DDSFFDFVRETYRERVETVLKKLEEHGLKR-FTKPSG  312 (389)
T ss_dssp             ECSCH-------HHHHHHHHHHHHSCCCCHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHHHHHHHHHHTTCCC-BCCCSB
T ss_pred             eccch-------hHHHHHhhhhhccccccccccccccccccc-cchhcccccccccccchhhhhhhhhhcccc-ccCCCc
Confidence            99882       344444444444547778888887777763 578999999999999999999999985554 678999


Q ss_pred             ceEEEEEeccccccCCCChHHHHHHHHHh-----cCeEEecCCCcCC-----CCeEEEEeecChHHHHHHHHHHHHHHHH
Q 042445          172 SMFVMVKLNYSLLEGINSDMEFALKLAKE-----ESVIVLPGITVGL-----KDWLRITFAVEPSALENGLGRMKAFYDR  241 (246)
Q Consensus       172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~-----~gi~v~pg~~f~~-----~~~iRls~~~~~~~l~~~~~~l~~~~~~  241 (246)
                      |+|+|++++..      ++.+++..++.+     +||.+.||..|+.     ++++|+|++.+++++++++++|.+++++
T Consensus       313 g~~~~~~lp~~------~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~~~~~~~iRis~~~~~~~l~~a~~~L~~~lk~  386 (389)
T d2gb3a1         313 AFYITAELPVE------DAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRAIDVLMEGLKM  386 (389)
T ss_dssp             SSEEEEECSSS------CHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCC------CHHHHHHHHHHhhhhhhCCEEEEeCcccccCCCCCCCEEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence            99999998754      477788877765     5789999998864     5799999998999999999999999987


Q ss_pred             H
Q 042445          242 H  242 (246)
Q Consensus       242 ~  242 (246)
                      +
T Consensus       387 f  387 (389)
T d2gb3a1         387 F  387 (389)
T ss_dssp             H
T ss_pred             h
Confidence            6

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=9e-37  Score=254.30  Aligned_cols=218  Identities=16%  Similarity=0.212  Sum_probs=173.3

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      +++|||||||.++|.+++++|+++|+++|+++|+||+|.++.+++....++.... .++++++.|+||.++++|+|+||+
T Consensus       138 ~l~~p~NPTG~~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~-~~~~v~~~s~SK~~~~~g~R~g~~  216 (361)
T d1d2fa_         138 LLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVA-RGDWALLTSGSKSFNIPALTGAYG  216 (361)
T ss_dssp             EEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTC-CSSEEEEECSHHHHTCGGGCCEEE
T ss_pred             Eecccccccccccchhhhhhhhhhhhhhheeeeeccccccccccccccccccccc-ccccccccccccccccccccceee
Confidence            8899999999999999999999999999999999999999999876665655443 458899999999999999999999


Q ss_pred             EeeCCCCCcchhhHHHHHHHH-hhhcC--CCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc-CCCCcccc
Q 042445           92 VTSDPNGILQDSGIVDSIKIF-LNISS--DPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKE-IPCITCPK  167 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~-~~~~~--~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~  167 (246)
                      ++++.       ......... .....  +++...+.++...+. ..+.+.++.+..++++++.+.+.+.+ .+++. +.
T Consensus       217 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-~~  287 (361)
T d1d2fa_         217 IIENS-------SSRDAYLSALKGRDGLSSPSVLALTAHIAAYQ-QGAPWLDALRIYLKDNLTYIADKMNAAFPELN-WQ  287 (361)
T ss_dssp             EECSH-------HHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCC-CC
T ss_pred             ecchh-------HHHHHHhhhcccccccccchhhhHHHHHHHhh-ccchhhhcccccchhhHHHHHHHhhhhccccc-cc
Confidence            88762       333433333 22221  223333333333333 23678889999999999999888876 66776 57


Q ss_pred             CCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHHHHHHHHHh
Q 042445          168 KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       168 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l~~~~~~~~  243 (246)
                      .|+||+|+|++++...    .++.+++.++++++||.+.||+.|+.  ++++|+|++.+++++++++++|.+++++++
T Consensus       288 ~p~gg~~~~~~l~~~~----~~~~~~~~~Ll~~~gv~v~pG~~F~~~~~~~vRis~~~~~e~l~~al~rl~~~l~~lr  361 (361)
T d1d2fa_         288 IPQSTYLAWLDLRPLN----IDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGCPRSKLEKGVAGLINAIRAVR  361 (361)
T ss_dssp             CCSBCSEEEEECGGGC----CCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHHHHC
T ss_pred             ccCceeEEEEEccCCC----CCHHHHHHHHHHhCCEEEEeccccCCCCCCEEEEEEcCCHHHHHHHHHHHHHHHHhcC
Confidence            8999999999886432    25788888889999999999999986  689999999899999999999999998763

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.5e-37  Score=258.04  Aligned_cols=221  Identities=19%  Similarity=0.244  Sum_probs=186.5

Q ss_pred             hhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCcccccc-CCcccEEEEccc
Q 042445            3 LINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVF-GSIVPLLTLGSI   77 (246)
Q Consensus         3 ~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~-~~~~~~i~~~s~   77 (246)
                      .+++.++++    +++|||||||.+++.+++++|+++|.+++.+++.||+|..+.+.+....+.... ...+++|++.|+
T Consensus       151 ~l~~~~~~~~~~i~l~~P~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~  230 (382)
T d1u08a_         151 EFAALLSERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSF  230 (382)
T ss_dssp             HHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEH
T ss_pred             HHhhhhccCccEEEECCCCcccccccccccchhhhhhhccccceeeeecchhhccccccccccccccccccCcEEEEeec
Confidence            344444444    889999999999999999999999999999999999999988876444333222 345689999999


Q ss_pred             ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDR  156 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  156 (246)
                      ||.+++||+|+||+++++        ++++.+..... ...+++.+.|.++..++..+ +.++.+.++.++++++.+.+.
T Consensus       231 SK~~~~pG~RiG~~v~~~--------~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~  301 (382)
T d1u08a_         231 GKTYHMTGWKVGYCVAPA--------PISAEIRKVHQYLTFSVNTPAQLALADMLRAE-PEHYLALPDFYRQKRDILVNA  301 (382)
T ss_dssp             HHHTTCGGGCCEEEECCH--------HHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHC-THHHHTHHHHHHHHHHHHHHH
T ss_pred             cccccCCcccchhhhccc--------hhHHHHHhhhcccccccccccccccccccccc-hHHHHHHHHHHHhhhhhhhhh
Confidence            999999999999999998        89998877644 45588999999999999864 578999999999999999999


Q ss_pred             hhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC----CCeEEEEeecChHHHHHHH
Q 042445          157 LKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL----KDWLRITFAVEPSALENGL  232 (246)
Q Consensus       157 L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----~~~iRls~~~~~~~l~~~~  232 (246)
                      +... ++. +..|+||+|+|++++...   ..++.+++.++++++||.+.||+.|+.    .+++|||++.+++++++++
T Consensus       302 ~~~~-g~~-~~~p~gg~~~~~~~~~~~---~~d~~e~~~~ll~e~gV~v~PG~~F~~~~~~~~~~Ris~~~~~e~l~~al  376 (382)
T d1u08a_         302 LNES-RLE-ILPCEGTYFLLVDYSAVS---TLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAA  376 (382)
T ss_dssp             TTSS-SCE-ECCCCBSSEEEEECTTTC---CSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCSCHHHHHHHH
T ss_pred             hccC-CcE-EecCCceEEEEEecCCCC---CCCHHHHHHHHHHHCCEEEEcchhhCCCCCCCCEEEEEEeCCHHHHHHHH
Confidence            8765 676 678999999999987531   236788889999999999999999964    5789999998999999999


Q ss_pred             HHHHH
Q 042445          233 GRMKA  237 (246)
Q Consensus       233 ~~l~~  237 (246)
                      ++|++
T Consensus       377 ~RL~~  381 (382)
T d1u08a_         377 ERLRQ  381 (382)
T ss_dssp             HHHTT
T ss_pred             HHHhC
Confidence            99875

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=3.3e-36  Score=250.38  Aligned_cols=204  Identities=18%  Similarity=0.247  Sum_probs=167.5

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      +++|||||||.+++.+++++|+++|++|++++|+||+|.++.+.+.....  .....++++++.|+||.|++||+|+||+
T Consensus       149 ~l~nP~NPtG~~~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~--~~~~~~~~i~~~S~SK~~~l~GlR~G~~  226 (355)
T d1lc5a_         149 FLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIP--ALKDNPHIWVLRSLTKFYAIPGLRLGYL  226 (355)
T ss_dssp             EEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGG--GCTTCTTEEEEEESTTTTTCTTTCCEEE
T ss_pred             eeecccCcccccchhhhhhhhhhhccccccccccccceeeeeeecccccc--cccccccceeecccccccccccccccce
Confidence            88999999999999999999999999999999999999998876544332  2344568999999999999999999999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG  171 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~  171 (246)
                      +++++       .+...++..... ...+.++|.++..+++  +..+..+.++.++++++.+.+.|.+++++..  .|.+
T Consensus       227 i~~~~-------~~~~~~~~~~~~-~~~~~~~~~~a~~~l~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~p~~  294 (355)
T d1lc5a_         227 VNSDD-------AAMARMRRQQMP-WSVNALAALAGEVALQ--DSAWQQATWHWLREEGARFYQALCQLPLLTV--YPGR  294 (355)
T ss_dssp             ECCCH-------HHHHHHHHHSCT-TCSCHHHHHHHHHGGG--CHHHHHHHHHHHHHHHHHHHHHHHTSTTEEE--CCCS
T ss_pred             eccch-------hhhHHHHhhcCC-cccccccccccccccc--ccchhHHHHHHHHHHHHHHHHHHhhcCCcEE--CCCC
Confidence            99872       344555544433 3789999999999998  4677888899999999999999999877763  6889


Q ss_pred             ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHHHHH
Q 042445          172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKAF  238 (246)
Q Consensus       172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l~~~  238 (246)
                      |+|+|++++..       +.++ .+.|.++||.|+||..|+.  ++|+|||++ +++++++++++|+++
T Consensus       295 ~~f~~~~~~~~-------~~~~-~~~L~~~gv~vr~~~~f~~~~~~~iRis~~-~~~e~~~li~aL~~i  354 (355)
T d1lc5a_         295 ANYLLLRCERE-------DIDL-QRRLLTQRILIRSCANYPGLDSRYYRVAIR-SAAQNERLLAALRNV  354 (355)
T ss_dssp             SSEEEEEESCT-------TCCH-HHHHHTTTEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCC-------HHHH-HHHHHHCCcEEEeCccCCCCCCCEEEEEeC-CHHHHHHHHHHHHHh
Confidence            99999988752       4445 4456688999999998865  789999997 667778888887765

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.8e-35  Score=247.06  Aligned_cols=215  Identities=25%  Similarity=0.361  Sum_probs=178.8

Q ss_pred             hhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccc
Q 042445            3 LINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSIS   78 (246)
Q Consensus         3 ~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~s   78 (246)
                      .+++.+++.    +++|||||||.+++.+++++|+++|++||+++|+||+|..+.........  .....++.+++.|+|
T Consensus       144 ~l~~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~s  221 (368)
T d1v2da_         144 ALEKALTPRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRL--REFAPERTFTVGSAG  221 (368)
T ss_dssp             HHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCH--HHHCTTTEEEEEEHH
T ss_pred             HHHHhhccCceEEEEcCCCCcccccCCHHHHHHHHHHHHHcCCeeeechhhhhhccccccccc--ccccccccceeeccc
Confidence            344444443    88999999999999999999999999999999999999987766533322  223345788899999


Q ss_pred             cccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHH
Q 042445           79 KRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADKCCDR  156 (246)
Q Consensus        79 K~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~  156 (246)
                      |.++++|+|+||+++++        ++++.+..... ...+++++.|.++..++.... ..++++.++.++++++.+.+.
T Consensus       222 k~~~~~G~R~g~~~~~~--------~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~  293 (368)
T d1v2da_         222 KRLEATGYRVGWIVGPK--------EFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGG  293 (368)
T ss_dssp             HHTTCGGGCCEEEECCT--------TTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccc--------cccchhhhhhhccccccccccccccccccccccchhhHHHHHHHHHHhhhhhhhh
Confidence            99999999999999999        88888877754 344789999999999988654 468999999999999999999


Q ss_pred             hhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC----CCeEEEEeecChHHHHHHH
Q 042445          157 LKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL----KDWLRITFAVEPSALENGL  232 (246)
Q Consensus       157 L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----~~~iRls~~~~~~~l~~~~  232 (246)
                      |+++ |+. +..|++|+|+|++++..       +   ..++++++||.++||+.|+.    ++++|+|++.+++++++++
T Consensus       294 l~~~-g~~-~~~p~g~~~~~~~l~~~-------~---~~~ll~~~gI~v~pg~~F~~~~~~~~~iRis~~~~~e~i~~ai  361 (368)
T d1v2da_         294 LRAM-GLR-VYVPEGTYFLMAELPGW-------D---AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCKTEEELHLAL  361 (368)
T ss_dssp             HHHT-TCC-EECCSBSSEEEEECTTC-------C---HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCSCHHHHHHHH
T ss_pred             HHhc-CcE-EecCCceeEEEEeCCcc-------H---HHHHHHhCCEEEEechhhCCCCCCCCEEEEEecCCHHHHHHHH
Confidence            9988 777 57899999999988642       2   23468899999999999874    6899999998899999999


Q ss_pred             HHHHHHH
Q 042445          233 GRMKAFY  239 (246)
Q Consensus       233 ~~l~~~~  239 (246)
                      ++|++++
T Consensus       362 ~rL~~~l  368 (368)
T d1v2da_         362 ERLGRVV  368 (368)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhC
Confidence            9999864

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.9e-33  Score=231.02  Aligned_cols=201  Identities=15%  Similarity=0.182  Sum_probs=160.6

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      ++++||||||.+++.++++.+.+.++ ++.++|+||+|.++..+....   ......++++++.||||.|+++|+|+||+
T Consensus       149 ~~~~pnNPtG~~~~~~~~~~~~~~~~-~~~~~iidd~~~~f~~~~~~~---~~~~~~~~~iv~~S~SK~~~laGlRiGy~  224 (354)
T d1fg7a_         149 YVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLA---GWLAEYPHLAILRTLSKAFALAGLRCGFT  224 (354)
T ss_dssp             EEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSG---GGTTTCTTEEEEEESSSTTCCGGGCCEEE
T ss_pred             eccCCCccceeEeeeccccccccccc-ccccccccccchhhccccccc---hhhcccccceEEeCCccccCCCccccccc
Confidence            99999999999999999998887776 688888899998887554221   22345668999999999999999999999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG  171 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~  171 (246)
                      ++++        ++++.+.+....+ .+|.+.|.++..++......+.....+.+.++++.+.+.+.+++++. ...|++
T Consensus       225 i~~~--------~~i~~l~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~-~~~p~~  294 (354)
T d1fg7a_         225 LANE--------EVINLLMKVIAPY-PLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVE-QVFDSE  294 (354)
T ss_dssp             EECH--------HHHHHHHHHSCSS-CSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEE-EECCCS
T ss_pred             cccc--------hhhhhhhhhcCcc-chhhHHHHHHHHHHhhhccccccccchhhhhHHHHHHHHHHhCCCcc-eeCCCC
Confidence            9998        9999998876655 77888888888887754556677777778899999999999987765 357899


Q ss_pred             ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC-CCeEEEEeecChHHHHHHHHHHH
Q 042445          172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-KDWLRITFAVEPSALENGLGRMK  236 (246)
Q Consensus       172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~iRls~~~~~~~l~~~~~~l~  236 (246)
                      |+|+|++++.        +.++ .+.|.++||+|+++..|+. ++|+|+|++ ++++++++++.|+
T Consensus       295 ~~f~~~~~~~--------~~~~-~~~L~~~gIlvr~~~~~~~~~~~lRisig-t~ee~~~~l~aLk  350 (354)
T d1fg7a_         295 TNYILARFKA--------SSAV-FKSLWDQGIILRDQNKQPSLSGCLRITVG-TREESQRVIDALR  350 (354)
T ss_dssp             SSEEEEEETT--------HHHH-HHHHHHTTEECEECTTSTTCTTEEEEECC-CHHHHHHHHHHHH
T ss_pred             ceEEEEeCCC--------HHHH-HHHHHHCCcEEecCCCCCCCCCEEEEEeC-CHHHHHHHHHHHh
Confidence            9999998863        4444 4566789999999887754 899999997 5555666655553

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

Probab=100.00  E-value=1.3e-33  Score=239.08  Aligned_cols=212  Identities=14%  Similarity=0.138  Sum_probs=166.0

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccc------cccCCcccEEEEcccccccccCC
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSM------GVFGSIVPLLTLGSISKRGIVPG   85 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~------~~~~~~~~~i~~~s~sK~~~~~g   85 (246)
                      ++++||||||.++|.+++++|+++|+++++++|+||+|.++.+++....+.      ......++++++.|+||.|+++|
T Consensus       181 ~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G  260 (412)
T d1yaaa_         181 LHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYG  260 (412)
T ss_dssp             EECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGG
T ss_pred             EecCCCCCccccCCHHHHHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhccccCCCeEEEEecCCccccCc
Confidence            889999999999999999999999999999999999999999986433221      22344568999999999999999


Q ss_pred             ceEEEEEeeCCCCCcchhhHHHHHH----HH-hhhcCCCCchHHHHHHHHHhhch-----HHHHHHHHHHHHHHHHHHHH
Q 042445           86 LRLGWLVTSDPNGILQDSGIVDSIK----IF-LNISSDPATFIQGAVPQILEKTE-----EEFFSKIIDILRETADKCCD  155 (246)
Q Consensus        86 ~r~G~i~~~~~~~~~~~~~~~~~l~----~~-~~~~~~~~~~~q~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~l~~  155 (246)
                      +|+||++++... .....+....+.    .. ...+.+++.+.|.++..++.+..     ..+++..++.++++++.+.+
T Consensus       261 ~RiG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~  339 (412)
T d1yaaa_         261 ERVGCFHLALTK-QAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRD  339 (412)
T ss_dssp             GCEEEEEEECCS-CTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEEchhh-hhhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999731 100001111111    11 22455789999999999998653     46788899999999999999


Q ss_pred             HhhcCC--CCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee-cChHHHHHHH
Q 042445          156 RLKEIP--CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA-VEPSALENGL  232 (246)
Q Consensus       156 ~L~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~-~~~~~l~~~~  232 (246)
                      .|++++  +...+..|++|||+|+.+          +.+++.++++++||.+.||.        |||++ .++++++.+.
T Consensus       340 ~L~~~g~~~~~~~~~~~gG~F~~~~l----------s~e~~~~L~~e~~V~~~~g~--------Ris~~g~~~~~i~~l~  401 (412)
T d1yaaa_         340 HLVKLGTPGNWDHIVNQCGMFSFTGL----------TPQMVKRLEETHAVYLVASG--------RASIAGLNQGNVEYVA  401 (412)
T ss_dssp             HHHHHTCSSCCTHHHHCCSSEEECCC----------CHHHHHHHHHHHCEECCTTS--------EEEGGGCCTTTHHHHH
T ss_pred             HHHHhCCCCCCceeCCCceEEEecCc----------CHHHHHHHHHhCCEEECCCC--------EEEeccCCHHHHHHHH
Confidence            998852  222356889999999543          45678899999999999986        99998 4888899999


Q ss_pred             HHHHHHHHHH
Q 042445          233 GRMKAFYDRH  242 (246)
Q Consensus       233 ~~l~~~~~~~  242 (246)
                      ++|.++++.+
T Consensus       402 ~ai~~v~k~~  411 (412)
T d1yaaa_         402 KAIDEVVRFY  411 (412)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhh
Confidence            9998888754

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

Probab=100.00  E-value=4.3e-33  Score=235.03  Aligned_cols=202  Identities=16%  Similarity=0.058  Sum_probs=162.4

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCcccc---ccCCcccEEEEcccccccccCCceE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMG---VFGSIVPLLTLGSISKRGIVPGLRL   88 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~---~~~~~~~~i~~~s~sK~~~~~g~r~   88 (246)
                      ++++||||||.++|.+++++|+++|++||++||+||+|.++.+++....+..   .....++++++.|+||.++++|+|+
T Consensus       180 ii~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~Ri  259 (401)
T d7aata_         180 LHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGERA  259 (401)
T ss_dssp             EESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCE
T ss_pred             EecCCCCCccccCCHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhhhhcccceeEeccccceeecccc
Confidence            8899999999999999999999999999999999999999999864332221   1233457888999999999999999


Q ss_pred             EEEEeeCCCCCcchhhHHHHHHHH--------hhhcCCCCchHHHHHHHHHhhch-----HHHHHHHHHHHHHHHHHHHH
Q 042445           89 GWLVTSDPNGILQDSGIVDSIKIF--------LNISSDPATFIQGAVPQILEKTE-----EEFFSKIIDILRETADKCCD  155 (246)
Q Consensus        89 G~i~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~~~q~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~l~~  155 (246)
                      ||++++.        .+++.+...        ...+.+++.+.|.++..++.+..     ..+++..++.++++++.+.+
T Consensus       260 G~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~  331 (401)
T d7aata_         260 GAFTVIC--------RDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVS  331 (401)
T ss_dssp             EEEEEEC--------SSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeecch--------HHHHHHHHHHHHHHHHhhccccccchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999998        544433321        22345788899999999888653     36778888999999999999


Q ss_pred             HhhcCCC--CccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec-ChHHHHHHH
Q 042445          156 RLKEIPC--ITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV-EPSALENGL  232 (246)
Q Consensus       156 ~L~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~-~~~~l~~~~  232 (246)
                      .|+++..  ...+..|++|||+|+.+          +.+++.+|++++||++.||.        |||++. ++++++.++
T Consensus       332 ~L~~~~~~~~~~~~~~~~G~F~~~~l----------s~e~~~~L~~e~gV~~~pg~--------Ris~a~~~~~~i~~la  393 (401)
T d7aata_         332 NLKKEGSSHNWQHITDQIGMFCFTGL----------KPEQVERLTKEFSIYMTKDG--------RISVAGVASSNVGYLA  393 (401)
T ss_dssp             HHHHTTCCSCCHHHHHCCSSEEECCC----------CHHHHHHHHHHHCEECCTTC--------EEEGGGCCTTTHHHHH
T ss_pred             HHHHhCCCCCcceECCCCeEEEecCC----------CHHHHHHHHHhCCEEECCCc--------EEEeccCCHHHHHHHH
Confidence            9998532  22246789999999644          45678889999999999986        999984 888898888


Q ss_pred             HHHHHHH
Q 042445          233 GRMKAFY  239 (246)
Q Consensus       233 ~~l~~~~  239 (246)
                      ++|.+++
T Consensus       394 ~ai~~v~  400 (401)
T d7aata_         394 HAIHQVT  400 (401)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            8888775

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

Probab=99.98  E-value=1.7e-32  Score=232.14  Aligned_cols=205  Identities=17%  Similarity=0.096  Sum_probs=164.5

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCcc---ccccCCcccEEEEcccccccccCCceE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVS---MGVFGSIVPLLTLGSISKRGIVPGLRL   88 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~---~~~~~~~~~~i~~~s~sK~~~~~g~r~   88 (246)
                      ++++||||||.++|.+++++|+++|++||++||+||+|.++.+++....+   .......++++++.|+||.++++|+|+
T Consensus       188 l~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~  267 (412)
T d1ajsa_         188 LHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERV  267 (412)
T ss_dssp             EESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCE
T ss_pred             EecCCCCCcCCCCCHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhhhhhhhcccccccccccccccCCCCCc
Confidence            88899999999999999999999999999999999999999998633221   122234567899999999999999999


Q ss_pred             EEEEeeCCCCCcchhhHHHHHHHH--------hhhcCCCCchHHHHHHHHHhhch-----HHHHHHHHHHHHHHHHHHHH
Q 042445           89 GWLVTSDPNGILQDSGIVDSIKIF--------LNISSDPATFIQGAVPQILEKTE-----EEFFSKIIDILRETADKCCD  155 (246)
Q Consensus        89 G~i~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~~~q~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~l~~  155 (246)
                      ||++++.        ...+.+...        ...+.+++...|.++..++.+..     ..+++..++.++++++.+.+
T Consensus       268 G~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~l~~  339 (412)
T d1ajsa_         268 GNLTVVA--------KEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRA  339 (412)
T ss_dssp             EEEEEEC--------SSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccch--------hHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999987        433333221        22344788899999988887532     45688889999999999999


Q ss_pred             HhhcCC--CCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee-cChHHHHHHH
Q 042445          156 RLKEIP--CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA-VEPSALENGL  232 (246)
Q Consensus       156 ~L~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~-~~~~~l~~~~  232 (246)
                      .|++++  +...+..+.+|||.|+.+          +.+++.++++++||++.||.        ||+++ .++++++.++
T Consensus       340 ~L~~~~~~~~~~~i~~~~G~F~~~~l----------s~~~v~~L~~e~gV~~vpg~--------Ri~~ag~~~~~i~~~a  401 (412)
T d1ajsa_         340 RLEALKTPGTWNHITDQIGMFSFTGL----------NPKQVEYLINQKHIYLLPSG--------RINMCGLTTKNLDYVA  401 (412)
T ss_dssp             HHHHTTCSSCCHHHHHCCSSEEECCC----------CHHHHHHHHHTTCEECCTTS--------EEEGGGCCTTTHHHHH
T ss_pred             HHHHhCCCCCeeeecCCCeEEEecCC----------CHHHHHHHHHhCCEEEeCCC--------eEEeccCCHHHHHHHH
Confidence            998853  222245778999999543          45677889999999999986        99997 4889999999


Q ss_pred             HHHHHHHHHH
Q 042445          233 GRMKAFYDRH  242 (246)
Q Consensus       233 ~~l~~~~~~~  242 (246)
                      ++|.+++++.
T Consensus       402 ~aI~~av~~~  411 (412)
T d1ajsa_         402 TSIHEAVTKI  411 (412)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhc
Confidence            9999999875

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=5.3e-32  Score=227.97  Aligned_cols=200  Identities=17%  Similarity=0.113  Sum_probs=158.9

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccc-ccc-CCcccEEEEcccccccccCCceEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSM-GVF-GSIVPLLTLGSISKRGIVPGLRLG   89 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~-~~~-~~~~~~i~~~s~sK~~~~~g~r~G   89 (246)
                      ++++||||||.++|.+++++|+++|++|+++||+||+|.++.+++....+. ... ...++++++.|+||.|+++|+|+|
T Consensus       177 ~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G  256 (396)
T d2q7wa1         177 FHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNFGLYNERVG  256 (396)
T ss_dssp             EECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGGCCE
T ss_pred             EecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEeccccccccCCccCchHhhhhhhhcccccccccccccccccCCCcc
Confidence            889999999999999999999999999999999999999999876332222 211 234578999999999999999999


Q ss_pred             EEEeeCCCCCcchhhHHHHHHHH--------hhhcCCCCchHHHHHHHHHhhch-----HHHHHHHHHHHHHHHHHHHHH
Q 042445           90 WLVTSDPNGILQDSGIVDSIKIF--------LNISSDPATFIQGAVPQILEKTE-----EEFFSKIIDILRETADKCCDR  156 (246)
Q Consensus        90 ~i~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~~~q~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~  156 (246)
                      |++++.        ..++.+...        ...+.+.+...|.++..++.+..     .+++++.++.++++++.+.+.
T Consensus       257 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~  328 (396)
T d2q7wa1         257 ACTLVA--------ADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNT  328 (396)
T ss_dssp             EEEEEC--------SSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHH
T ss_pred             ccccch--------hHHHHHHHhhhhhhhhhhccccCCCHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998        444433322        22344778888888888887542     467888999999999999999


Q ss_pred             hhcCC--C-CccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec-ChHHHHHHH
Q 042445          157 LKEIP--C-ITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV-EPSALENGL  232 (246)
Q Consensus       157 L~~~~--~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~-~~~~l~~~~  232 (246)
                      |++++  + +. +..+.+|+|.|+.+          +.+++.+++.++||++.||+        |||++. ++++++.++
T Consensus       329 L~~~~~~~~~~-~~~~~~G~F~~~~l----------~~e~~~~L~~e~gV~~~~g~--------Ri~~a~l~~~~i~~~~  389 (396)
T d2q7wa1         329 LQEKGANRDFS-FIIKQNGMFSFSGL----------TKEQVLRLREEFGVYAVASG--------RVNVAGMTPDNMAPLC  389 (396)
T ss_dssp             HHHTTCCSCCT-HHHHCCSSEEECCC----------CHHHHHHHHHHHCEECCTTC--------EEEGGGCCTTTHHHHH
T ss_pred             HHHhCCCCCcc-eecCCCeEEEeeCC----------CHHHHHHHHHhCCEEECCCC--------EEEecCCCHHHHHHHH
Confidence            99853  2 23 45778999999644          35678889999999999987        999985 888898888


Q ss_pred             HHHHHH
Q 042445          233 GRMKAF  238 (246)
Q Consensus       233 ~~l~~~  238 (246)
                      ++|.++
T Consensus       390 ~ai~~v  395 (396)
T d2q7wa1         390 EAIVAV  395 (396)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            888775

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

Probab=99.97  E-value=2.4e-31  Score=224.43  Aligned_cols=199  Identities=13%  Similarity=0.120  Sum_probs=155.9

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      +++|||||||.+..          +..+++.+|.||+|.+..+.     ++  ....+++|++.||||.|+++|+|+||+
T Consensus       201 ~l~sPnNPtG~l~~----------~v~~~~~~I~DEaY~~~~f~-----~~--~~~~~~~Ivl~S~SK~fglaGlRiGw~  263 (425)
T d2hoxa1         201 MVTSPNNPEGLLRH----------AVIKGCKSIYDMVYYWPHYT-----PI--KYKADEDILLFTMSKFTGHSGSRFGWA  263 (425)
T ss_dssp             EEESSCTTTCCCCC----------CSSTTCEEEEECTTCSTTTS-----CC--CSCBCCSEEEEEHHHHTSCGGGCCEEE
T ss_pred             EEECCCCCCcchhh----------hhhhCCEEEEeccccCcccc-----ch--hhhcCCeEEEEeCHHhccCcchheeeE
Confidence            99999999998743          22358999999999754433     22  133468899999999999999999999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhch----------HHHHHHHHHHHHHHHHHHHHHhhcC
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTE----------EEFFSKIIDILRETADKCCDRLKEI  160 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~----------~~~~~~~~~~~~~~~~~l~~~L~~~  160 (246)
                      +++++       .+.+++...... +.++|.++|.++..+|....          .++.+..++.++++++.+.+.|++.
T Consensus       264 i~~~~-------~i~~~~~~~~~~~~~~vs~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~  336 (425)
T d2hoxa1         264 LIKDE-------SVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQS  336 (425)
T ss_dssp             EECCH-------HHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             EeCCH-------HHHHHHHHhhccCcccCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            88773       677778777553 45889999999999887532          2467778889999999999999886


Q ss_pred             CCCccc-------------cCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC-CCeEEEEeecChH
Q 042445          161 PCITCP-------------KKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-KDWLRITFAVEPS  226 (246)
Q Consensus       161 ~~~~~~-------------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~iRls~~~~~~  226 (246)
                      +.+...             ..+..+.|+|+++...       +.+++.++|+++||.++||..|+. ++++|+|+..+++
T Consensus       337 ~~~~l~~~p~~~~~~f~~~~~~~~~~f~wl~~~~~-------~~~~~~~lL~e~gI~v~pGs~FG~~~~yvRisl~~~~e  409 (425)
T d2hoxa1         337 DRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWE-------EDKDCYQTFQNGRINTQNGVGFEASSRYVRLSLIKTQD  409 (425)
T ss_dssp             SSEECCCCCSCEEETTTTEEECCCCSEEEEEECSG-------GGCSHHHHHHHTTEECEEGGGGTSCTTEEEEECSSCHH
T ss_pred             CCceeeccCCccceeeeeeccCCCcceeeeeCCCC-------hHHHHHHHHHhCCEEEEechhcCCCCCEEEEEecCCHH
Confidence            543211             1234456788877543       445677889999999999999986 7899999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 042445          227 ALENGLGRMKAFYDR  241 (246)
Q Consensus       227 ~l~~~~~~l~~~~~~  241 (246)
                      ++++++++|++++++
T Consensus       410 ~ld~~l~rL~~~v~a  424 (425)
T d2hoxa1         410 DFDQLMYYLKDMVKA  424 (425)
T ss_dssp             HHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999999863

>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Thermotoga maritima [TaxId: 2336]

Probab=99.97  E-value=2.2e-30  Score=213.34  Aligned_cols=191  Identities=18%  Similarity=0.192  Sum_probs=152.5

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      +++|||||||.+++.+++.++    .++++++|+||+|.++.+...    .......+++++++|+||.++++|+|+||+
T Consensus       143 ~l~nP~NPtG~~~s~~~l~~~----~~~~~~ii~Dd~~~~~~~~~~----~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~  214 (334)
T d2f8ja1         143 FIPNPNNPTGHVFEREEIERI----LKTGAFVALDEAYYEFHGESY----VDFLKKYENLAVIRTFSKAFSLAAQRVGYV  214 (334)
T ss_dssp             EEESSCTTTCCCCCHHHHHHH----HTTTCEEEEECTTGGGTCCCC----GGGGGTCSSEEEEEESTTTSSCTTTCEEEE
T ss_pred             EecccccccceeecHHHhhcc----ccceeEEeecccchhhccccc----ccccccCceEEEEecCccccchhhhhhhhc
Confidence            889999999999997776553    458999999999987654432    122334568999999999999999999999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG  171 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~  171 (246)
                      ++++        +++..+......+ ++|..+|.++.+++.  ..+++++.++.++++++.+.+.|+++ |+. +.+|+ 
T Consensus       215 ~~~~--------~~i~~l~~~~~~~-~~s~~~~~~a~~~l~--~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~-~~~~~-  280 (334)
T d2f8ja1         215 VASE--------KFIDAYNRVRLPF-NVSYVSQMFAKVALD--HREIFEERTKFIVEERERMKSALREM-GYR-ITDSR-  280 (334)
T ss_dssp             EECH--------HHHHHHHHHSCTT-CSCHHHHHHHHHHHH--THHHHHHHHHHHHHHHHHHHHHHHHH-TCE-ECCCC-
T ss_pred             ccch--------HHHHHHHHhhccc-ccchhhhhhcccccc--cccchhhHHHHHHHHHHHHHHHHHHC-CCe-ECCCC-
Confidence            9998        9999998876554 789999999988887  46788888999999999999999998 676 44555 


Q ss_pred             ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHH
Q 042445          172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKA  237 (246)
Q Consensus       172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~  237 (246)
                      |.|+|+.++..       +.+.+.+.|.++||.|+++     ++|+|+|++ +.+++++++++|++
T Consensus       281 g~f~~~~~~~~-------~~~~~~~~L~~~GI~vr~~-----~~~vRis~g-~~ee~~~l~~~l~~  333 (334)
T d2f8ja1         281 GNFVFVFMEKE-------EKERLLEHLRTKNVAVRSF-----REGVRITIG-KREENDMILRELEV  333 (334)
T ss_dssp             SSEEEEECCHH-------HHHHHHHHHHHTTEECEEE-----TTEEEEECC-CHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCC-------CHHHHHHHHHHCCCEECCC-----CCeEEEEcC-CHHHHHHHHHHHhc
Confidence            55789877654       4455566778899998753     589999997 55566777777664

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=4.1e-32  Score=228.73  Aligned_cols=203  Identities=15%  Similarity=0.080  Sum_probs=156.9

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCcc-ccc-cCCcccEEEEcccccccccCCceEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVS-MGV-FGSIVPLLTLGSISKRGIVPGLRLG   89 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~-~~~-~~~~~~~i~~~s~sK~~~~~g~r~G   89 (246)
                      +++|||||||.++|.+++++|+++|+++|+++|+||+|.++.+++....+ ... ....++++++.|+||.++++|+|+|
T Consensus       178 ~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG  257 (397)
T d3tata_         178 LHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVG  257 (397)
T ss_dssp             ECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHHHTBTTTCCB
T ss_pred             EecCCCCCCCeeCCHHHHHHHHHHHhhcCeeEEeehhhhhhccCCcccchhhhhhhhcCCceEEEecCcccccccCcccc
Confidence            88999999999999999999999999999999999999999987533222 222 2344689999999999999999999


Q ss_pred             EEEeeCCCCCcchhhHHHHHHH----H-hhhcCCCCchHHHHHHHHHhhch-----HHHHHHHHHHHHHHHHHHHHHhhc
Q 042445           90 WLVTSDPNGILQDSGIVDSIKI----F-LNISSDPATFIQGAVPQILEKTE-----EEFFSKIIDILRETADKCCDRLKE  159 (246)
Q Consensus        90 ~i~~~~~~~~~~~~~~~~~l~~----~-~~~~~~~~~~~q~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~  159 (246)
                      |++++..  ..   +...++..    . ...+++++...|.++..++....     .++++..+++++++++.+.+.|+.
T Consensus       258 ~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~  332 (397)
T d3tata_         258 GLSVMCE--DA---EAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRTRILAMRQELVKVLST  332 (397)
T ss_dssp             CCEEECS--ST---THHHHHHHHHHHHTTTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred             ccccchh--HH---HHHHHHHHHHHHHhhcccccccHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999873  11   22222222    1 22344778889988888887543     356677778888888999988877


Q ss_pred             C-CC--CccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec-ChHHHHHHHHHH
Q 042445          160 I-PC--ITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV-EPSALENGLGRM  235 (246)
Q Consensus       160 ~-~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~-~~~~l~~~~~~l  235 (246)
                      . ++  +. +..|.+|+|+|+.+          +.+++.+|++++||.+.||.        |||++. ++++++.+.++|
T Consensus       333 ~~~~~~~~-~~~~~~G~F~~~~l----------s~e~~~~L~~e~~V~l~~g~--------Ri~~a~~~~~~i~~~~~ai  393 (397)
T d3tata_         333 EMPERNFD-YLLNQRGMFSYTGL----------SAAQVDRLREEFGVYLIASG--------RMCVAGLNTANVQRVAKAF  393 (397)
T ss_dssp             TCTTSCTT-HHHHCCSSBCCCCC----------CHHHHHHHTTTTCEECCSSS--------CCBTTSCCTTTHHHHHHHH
T ss_pred             hCCCCceE-EEcCCCceEEecCc----------CHHHHHHHHHhCCEEeCCCC--------EEEeccCCHHHHHHHHHHH
Confidence            4 22  33 46789999999654          34667889999999999986        999975 888888888887


Q ss_pred             HHH
Q 042445          236 KAF  238 (246)
Q Consensus       236 ~~~  238 (246)
                      .++
T Consensus       394 ~~v  396 (397)
T d3tata_         394 AAV  396 (397)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            765

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.97  E-value=1.6e-30  Score=218.61  Aligned_cols=201  Identities=14%  Similarity=0.058  Sum_probs=157.2

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCcccccc--CCcccEEEEcccccccccCCceEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVF--GSIVPLLTLGSISKRGIVPGLRLG   89 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~--~~~~~~i~~~s~sK~~~~~g~r~G   89 (246)
                      ++++||||||.++|.+++++|+++|++|+++||+||+|.++.+++....+....  ....+++++.|+||.++++|+|+|
T Consensus       174 ~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G  253 (394)
T d2ay1a_         174 LHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERTG  253 (394)
T ss_dssp             EESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGCEE
T ss_pred             EeCCCCCCCCCCCCHHHHHHHHHHhhcceEEEEEeccchhhcccccccchhhhhhhhhcccccccccccccccCCccccc
Confidence            778999999999999999999999999999999999999999886433222221  223478999999999999999999


Q ss_pred             EEEeeCCCCCcchhhHHHHHHHH--------hhhcCCCCchHHHHHHHHHhhch-----HHHHHHHHHHHHHHHHHHHHH
Q 042445           90 WLVTSDPNGILQDSGIVDSIKIF--------LNISSDPATFIQGAVPQILEKTE-----EEFFSKIIDILRETADKCCDR  156 (246)
Q Consensus        90 ~i~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~~~q~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~  156 (246)
                      |++++.        ..++.....        ...+.+.+...|+.+...+.+..     ..+++..++.++++++.+.+.
T Consensus       254 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~  325 (394)
T d2ay1a_         254 CLLALC--------ADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGE  325 (394)
T ss_dssp             EEEEEC--------SSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhch--------hHHHHHHHhhhhhHhhhcccccchhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998        444333221        12344677788888887777543     467888888999999999999


Q ss_pred             hhcCC--CCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec-ChHHHHHHHH
Q 042445          157 LKEIP--CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV-EPSALENGLG  233 (246)
Q Consensus       157 L~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~-~~~~l~~~~~  233 (246)
                      |++++  +...+..|++|||+|+.+          +.+++.+++.++||++.||.        |||++. ++++++.+.+
T Consensus       326 L~~~~~~~~~~~~~~~~G~F~~~~l----------s~~~~~~L~~~~~V~~~~g~--------Ri~~a~l~~~~i~~l~~  387 (394)
T d2ay1a_         326 LRDLSGSDRFGFVAEHRGMFSRLGA----------TPEQVKRIKEEFGIYMVGDS--------RINIAGLNDNTIPILAR  387 (394)
T ss_dssp             HHHHHTSSTTTHHHHCCSSEEECCC----------CHHHHHHHHHHHCEECCTTC--------EEEGGGCCTTTHHHHHH
T ss_pred             HHHhCCCCceeeECCCceeEEecCc----------CHHHHHHHHHhCCEEecCCC--------EEEecCCCHHHHHHHHH
Confidence            98742  222256789999999644          45678889999999999986        999985 8888888777


Q ss_pred             HHHHH
Q 042445          234 RMKAF  238 (246)
Q Consensus       234 ~l~~~  238 (246)
                      +|.++
T Consensus       388 ai~~v  392 (394)
T d2ay1a_         388 AIIEV  392 (394)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            77653

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.90  E-value=1.5e-23  Score=174.13  Aligned_cols=224  Identities=16%  Similarity=0.081  Sum_probs=147.5

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      |.+++.++++    ++++|+||+  +++.+++++|+++|++||+++++||+|..+.++.....+....+   ..+++.|+
T Consensus       124 e~l~~~i~~~tk~i~~~~p~n~~--~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~~~~~~~~~---~di~~~S~  198 (366)
T d2aeua1         124 GEILNKIDKDTLVIITGSTMDLK--VIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLG---ADLVVTST  198 (366)
T ss_dssp             HHHHTTCCTTEEEEEECBCTTSC--BCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHT---CSEEEEET
T ss_pred             HHHHHhcCCCceEEEEEecCCCC--cCCHHHHHHHHHHhccCcEEEEEecCccccccccccCCCHhhcC---ceEEEecc
Confidence            5667777775    788999985  46788999999999999999999999997776543322221222   23888999


Q ss_pred             ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHH----HHHHH
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILR----ETADK  152 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~----~~~~~  152 (246)
                      ||.+  +|+|+||+++++        +++++++.... .+++++++.|.++.+.|+.-....+++..+..+    ...+.
T Consensus       199 sK~~--~g~~~G~i~~~~--------~~i~~~~~~~~~~g~~~~~~~~~a~~~aL~tl~~~r~~~~~~~~~~i~~~~~~~  268 (366)
T d2aeua1         199 DKLM--EGPRGGLLAGKK--------ELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEK  268 (366)
T ss_dssp             TSSS--SSCSCEEEEEEH--------HHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHH
T ss_pred             cccc--cccceeEEEecH--------HHHHHHHHHHhcccccCCHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhh
Confidence            9974  588999999999        99999987743 455788999999888887432222222222222    22233


Q ss_pred             HHHHhhcCCCCcc-ccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC-CCeEEEEeec-ChHH--
Q 042445          153 CCDRLKEIPCITC-PKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-KDWLRITFAV-EPSA--  227 (246)
Q Consensus       153 l~~~L~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~iRls~~~-~~~~--  227 (246)
                      +...+...++... ...+.+++++|............++.+++..+++++||.+.||..|+. ++++|||++. +.++  
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Ll~~~gV~~ip~~~~p~~~~~lRis~~~~~~~~i~  348 (366)
T d2aeua1         269 LNKELKAIDDNINIVYERTPTGFVIKRVYKDDTINIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERID  348 (366)
T ss_dssp             HHHHHTTTCTTEEEEEEECSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGSC
T ss_pred             hhccccccccccCcccccCccchhccCCCcceeecccCHHHHHHHHHHhCCEEEEECCCCCCCCCEEEEeccccchhhCC
Confidence            3333333333221 234456778876654321101113567888899999999999988854 7899999985 3222  


Q ss_pred             HHHHHHHHHHHHH
Q 042445          228 LENGLGRMKAFYD  240 (246)
Q Consensus       228 l~~~~~~l~~~~~  240 (246)
                      .+..++.|.+.++
T Consensus       349 ~d~l~~ai~~~lK  361 (366)
T d2aeua1         349 DNYIIKAIVESIK  361 (366)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            2444444544444

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.79  E-value=2.7e-18  Score=142.64  Aligned_cols=202  Identities=18%  Similarity=0.124  Sum_probs=142.2

Q ss_pred             CCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEcccccccccCCceEEEEEe
Q 042445           15 FQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGSISKRGIVPGLRLGWLVT   93 (246)
Q Consensus        15 ~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~g~r~G~i~~   93 (246)
                      .--+.+|.+.|   +++|+++|++||+++++||+|+...++..+-.....++. ....++++||||+||+.|   |++.+
T Consensus       185 gvySmdGd~ap---l~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~di~~gTlsKa~g~~G---g~v~~  258 (396)
T d2bwna1         185 SVYSMDGDFGP---IKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFG---GYIAA  258 (396)
T ss_dssp             SBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSCC---EEEEE
T ss_pred             eeccCcccccc---cHhHHHHhhhhcceeeeccceeeeeeccccccchhhcCCceeeeeeeecccccccccc---cccch
Confidence            33355787777   899999999999999999999998887654433333322 334689999999999999   99999


Q ss_pred             eCCCCCcchhhHHHHHHHH-hhh--cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCC
Q 042445           94 SDPNGILQDSGIVDSIKIF-LNI--SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPE  170 (246)
Q Consensus        94 ~~~~~~~~~~~~~~~l~~~-~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~  170 (246)
                      ++        ++++.++.. .++  +.+++|....++...+.-.......+.+..++.+.+.+.+.|..+ |+..  .+.
T Consensus       259 ~~--------~~i~~l~~~~~~~ifStalpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~~~~~l~~~-g~~~--~~~  327 (396)
T d2bwna1         259 SA--------RMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL-GMPI--IDH  327 (396)
T ss_dssp             CH--------HHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH-TCCB--CCC
T ss_pred             hH--------HHHHHHHhhcchhhhcccCcHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhc-CCCc--CCC
Confidence            88        999999877 332  324555555555555553233445666778888999999999876 4542  233


Q ss_pred             CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC---CCeEEEEeec--ChHHHHHHHHHHHHH
Q 042445          171 GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFAV--EPSALENGLGRMKAF  238 (246)
Q Consensus       171 ~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~iRls~~~--~~~~l~~~~~~l~~~  238 (246)
                      .+..+.+.+....     .......++|+++||.+.+..++..   ...+|++++.  +.++++++++.|++.
T Consensus       328 ~spIvpv~ig~~~-----~~~~~a~~lL~e~Gi~v~~i~~PtVp~g~~rlRi~lsa~ht~edId~l~~~L~~i  395 (396)
T d2bwna1         328 GSHIVPVVIGDPV-----HTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLL  395 (396)
T ss_dssp             SSSCEEEECCCHH-----HHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCHH-----HHHHHHHHHHHhCCEEEEEECCCcCCCCCeeEEEEeCccCCHHHHHHHHHHHHHh
Confidence            3444444454322     1445556678889999877554432   5679999995  899999999998864

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=2.3e-18  Score=143.23  Aligned_cols=202  Identities=12%  Similarity=0.049  Sum_probs=141.9

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      +....++++|.+.+   +++|.++|++||+++++||+|+.+.++..+.......+. ...+.+.|++|.+|++|   |++
T Consensus       172 v~e~v~s~~G~i~p---l~~l~~l~~~~~~~livDeah~~gv~G~~g~G~~~~~~~-~~~~~~~t~~ka~g~~G---g~v  244 (383)
T d1bs0a_         172 VTEGVFSMDGDSAP---LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKV-KPELLVVTFGKGFGVSG---AAV  244 (383)
T ss_dssp             EEESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTC-CCSEEEEESSSTTSSCC---EEE
T ss_pred             EecCCCCCCCcccc---hhHHHHHHHhcCcEEEeecceeeeecCCcccchHHHcCC-ccccccccccccccccc---ccc
Confidence            67777889999988   788888999999999999999988877543333322332 24466789999999998   999


Q ss_pred             EeeCCCCCcchhhHHHHHHHH-hh--hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccC
Q 042445           92 VTSDPNGILQDSGIVDSIKIF-LN--ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKK  168 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~-~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~  168 (246)
                      .++.        +.++.++.. ..  +++..+|....++..++.-......+..+.++.++...+.+.|+++ ++..  .
T Consensus       245 ~~~~--------~~~~~l~~~~~~~~~s~~~~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~-g~~~--~  313 (383)
T d1bs0a_         245 LCSS--------TVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDL-PFTL--A  313 (383)
T ss_dssp             EECH--------HHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTS-SCEE--C
T ss_pred             ccch--------hHHHHHHhhchhhhhcccccchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhc-CCcc--C
Confidence            9998        889988876 32  2324455555555555553223456677788889999999999887 4432  2


Q ss_pred             CCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC---CCeEEEEeec--ChHHHHHHHHHHHH
Q 042445          169 PEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFAV--EPSALENGLGRMKA  237 (246)
Q Consensus       169 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~iRls~~~--~~~~l~~~~~~l~~  237 (246)
                      +..+..+.+.+....      ....+.+.|.++||.+.+..++..   +..+|++++.  ++++++++++.|..
T Consensus       314 ~~~s~Ii~v~~g~~~------~a~~~~~~L~~~Gi~v~~~~~PtVp~g~~~lRi~~~a~ht~edid~l~~~L~~  381 (383)
T d1bs0a_         314 DSCSAIQPLIVGDNS------RALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHG  381 (383)
T ss_dssp             SCCSSBCCEEEESHH------HHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEECCHH------HHHHHHHHHHHCCceEEEEcCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHh
Confidence            233333333344321      334456677789999987544332   4579999995  89999999998865

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=6.6e-17  Score=135.02  Aligned_cols=200  Identities=15%  Similarity=0.095  Sum_probs=138.2

Q ss_pred             CCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEccccccccc-CCceEEEEEeeC
Q 042445           18 FHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGSISKRGIV-PGLRLGWLVTSD   95 (246)
Q Consensus        18 NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~-~g~r~G~i~~~~   95 (246)
                      +..|...+   ++++.++|++||+++|+||+++.+.++..+.......+. .+..++++|+||.+++ +|   |++.++.
T Consensus       188 s~~G~~~~---L~~l~~L~~~~~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~dii~~tl~Ka~gg~~G---g~v~g~~  261 (401)
T d1fc4a_         188 SMDGVIAN---LKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGASG---GYTAARK  261 (401)
T ss_dssp             TTTTEECC---HHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSSC---EEEEECH
T ss_pred             CCCCchhh---hhHHHHHHhhcCcEEEehhhhccccccCCCCccchhccCCCCCeEEEeecccccccCCc---ccccCCH
Confidence            34455544   899999999999999999999999887654433333332 2345889999999853 35   8888888


Q ss_pred             CCCCcchhhHHHHHHHH-hh--hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCc
Q 042445           96 PNGILQDSGIVDSIKIF-LN--ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGS  172 (246)
Q Consensus        96 ~~~~~~~~~~~~~l~~~-~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g  172 (246)
                              ++++.++.. ..  ++.+.+|....++...+.  ......+.+++++++.+.+.+.+... ++.. ...+ +
T Consensus       262 --------~~~~~l~~~~~~~~~s~~l~p~~~~aa~~~l~--~~~~~~~~~~~l~~~~~~~~~~l~~~-g~~~-~~~~-~  328 (401)
T d1fc4a_         262 --------EVVEWLRQRSRPYLFSNSLAPAIVAASIKVLE--MVEAGSELRDRLWANARQFREQMSAA-GFTL-AGAD-H  328 (401)
T ss_dssp             --------HHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHH--HHHTCHHHHHHHHHHHHHHHHHHHHT-TCCB-CCSS-S
T ss_pred             --------HHHHHHHcCChhhhhcCCCCHHHHHHHHhhhc--ccccCHHHHHHHHHHHHHHHhhhccc-CCcc-CCCC-C
Confidence                    999988765 33  233556656565555555  23345677888999999999999886 4442 2223 3


Q ss_pred             eEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC---CCeEEEEeec--ChHHHHHHHHHHHHHHHHH
Q 042445          173 MFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFAV--EPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~iRls~~~--~~~~l~~~~~~l~~~~~~~  242 (246)
                      ..+.+.+....      ....+.+.|.++||.+.+-.+...   ...+|++++.  ++++++++++.|.++.+++
T Consensus       329 pIv~v~~~~~~------~a~~~~~~L~~~Gi~v~~i~~PtVp~g~~~lRi~~~a~hT~edId~~v~al~ev~~~l  397 (401)
T d1fc4a_         329 AIIPVMLGDAV------VAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQL  397 (401)
T ss_dssp             SEEEEEEECHH------HHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             CEEEEEECCHH------HHHHHHHHHHHCCceEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence            33334454332      233455667789999877443322   4569999985  9999999999999998775

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.71  E-value=2.7e-17  Score=133.47  Aligned_cols=207  Identities=11%  Similarity=0.019  Sum_probs=133.5

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      +...++||.|.+++.+++++|.++|++++++++.|++|..+........... ........+.   +|..+..|...|++
T Consensus       134 ~~~~~~~~~~~~~~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~g~~~~~~  209 (343)
T d1m6sa_         134 IENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKE-YAGYADSVMF---CLSKGLCAPVGSVV  209 (343)
T ss_dssp             EESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHH-HHHTCSEEEE---ESSSTTCCSSCEEE
T ss_pred             cccccccCCceecCHHHHHHHHHHHHhcCeEEEeccccccccccccccchhh-hccccccccc---cccccccccccccc
Confidence            6677889999999999999999999999999999999987665432221111 1111122333   33334455566888


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCC
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPE  170 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~  170 (246)
                      +...        +.+......... ..+.+.....++.....   ........+...++...+.+.+.++++.. ...|.
T Consensus       210 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  277 (343)
T d1m6sa_         210 VGDR--------DFIERARKARKMLGGGMRQAGVLAAAGIIA---LTKMVDRLKEDHENARFLALKLKEIGYSV-NPEDV  277 (343)
T ss_dssp             EECH--------HHHHHHHHHHHHHTCCCSSTHHHHHHHHHH---HHHSSTTHHHHHHHHHHHHHHHHHHTCBC-CGGGC
T ss_pred             cccH--------HHHhhhHhhCcccccccchhHHHHHhhhhh---hhhhHHHHHHHHHHHHHhhhHHHHhccCc-cCCCC
Confidence            8877        777666655432 22334443333332222   11122223334455555666666554444 34566


Q ss_pred             CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHHh
Q 042445          171 GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       171 ~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~~  243 (246)
                      ++++++++++....     +.+.+.+.|+++||.+.|..    ++++|++++.  ++++++++++.|+++++++.
T Consensus       278 ~~~~v~~~~~~~~~-----~a~~l~~~L~~~Gi~v~~~~----~~~iRi~~~~~~t~edid~~v~~l~~v~~~~~  343 (343)
T d1m6sa_         278 KTNMVILRTDNLKV-----NAHGFIEALRNSGVLANAVS----DTEIRLVTHKDVSRNDIEEALNIFEKLFRKFS  343 (343)
T ss_dssp             CSSEEEEECTTSSS-----CHHHHHHHHHHHTEECEEEE----TTEEEEECCTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred             CceEEEEEeCCCcc-----cHHHHHHHHHHCCCEEecCC----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHhC
Confidence            78899988765431     34445666789999998854    6899999874  89999999999999998863

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=99.69  E-value=3.2e-16  Score=131.02  Aligned_cols=200  Identities=12%  Similarity=0.064  Sum_probs=140.2

Q ss_pred             Ccc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCC
Q 042445           20 VGS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNG   98 (246)
Q Consensus        20 tG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~   98 (246)
                      .|. .++++.+++|.++|++||+++|.||+++++...|..+ ....++-...   +-+++|.++..+..+|.+++.+   
T Consensus       199 ~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~~~-~~e~~gv~PD---ivt~gK~l~gG~~p~~~v~~~~---  271 (404)
T d1z7da1         199 AGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLL-CVHHYNVKPD---VILLGKALSGGHYPISAVLAND---  271 (404)
T ss_dssp             TTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS-GGGGGTCCCS---EEEECGGGGTTSSCCEEEEECH---
T ss_pred             CCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCcccccc-cccccCCCCC---EEEEcccccCCCCCcccccchH---
Confidence            454 4667889999999999999999999999887665433 3333333223   3368899776568999999998   


Q ss_pred             CcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEE
Q 042445           99 ILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVM  176 (246)
Q Consensus        99 ~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~  176 (246)
                           ++.+.+... ...+++.||++.+++.+.|+... +...+...+.-....+.+.+.+++.+.+.. +.. -|+++.
T Consensus       272 -----~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~-vrg-~Gl~~~  344 (404)
T d1z7da1         272 -----DIMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENLKRELKDSKIVRD-VRG-KGLLCA  344 (404)
T ss_dssp             -----HHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEE-EEE-ETTEEE
T ss_pred             -----HHHccCCCCCcCcCCCCCcchhhhhhhhhhhhhcchhhhhhccchhHHHHHHHHHHhcCCCeEE-EEe-eCcEEE
Confidence                 887776654 33455889999999999998533 344445545555555666666666654432 222 355566


Q ss_pred             EEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHHHHHH
Q 042445          177 VKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~~~~  242 (246)
                      +.+....     .....+...+.++||.+.|..    .+.|||+..  .+++++++++++|.++++++
T Consensus       345 i~~~~~~-----~~~~~~~~~l~~~Gl~~~~~~----~~~ir~~Ppl~it~~~id~~~~~l~~alk~~  403 (404)
T d1z7da1         345 IEFKNEL-----VNVLDICLKLKENGLITRDVH----DKTIRLTPPLCITKEQLDECTEIIVKTVKFF  403 (404)
T ss_dssp             EEECTTT-----CCHHHHHHHHHHTTEECCEET----TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEcCCc-----ccHHHHHHHHHhCCeEEecCC----CCEEEEECCcCCCHHHHHHHHHHHHHHHHhh
Confidence            6776542     133334556778999987643    578999866  49999999999999999875

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=99.67  E-value=6e-16  Score=128.27  Aligned_cols=205  Identities=10%  Similarity=0.122  Sum_probs=132.1

Q ss_pred             hhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHc----CCEEEEccccCCcccCCCCCccccccCCcccEEEEc
Q 042445            4 INQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKL----GIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLG   75 (246)
Q Consensus         4 ~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~----~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~   75 (246)
                      +++.++++    +++++|||||.+++   +++|.++|+++    ++++++|.+++.....    ..+..+   +.-+++.
T Consensus       138 l~~~i~~~t~~v~i~~~~n~tG~~~~---~~~I~~l~~~~~~~~~~~~~vD~~~~~g~~~----~~~~~~---~~D~~~~  207 (381)
T d1elua_         138 LANHLGPKTRLVILSHLLWNTGQVLP---LAEIMAVCRRHQGNYPVRVLVDGAQSAGSLP----LDFSRL---EVDYYAF  207 (381)
T ss_dssp             HHTTCCTTEEEEEEESBCTTTCCBCC---HHHHHHHHHHCCSSSCCEEEEECTTTBTTBC----CCTTTS---CCSEEEE
T ss_pred             HHhhhcccccccccccccccccccch---hhHHHHHHhhccccccccccccccccccccc----cccccc---ccccccc
Confidence            44455544    88899999999999   56677777764    6999999998754321    122222   2338888


Q ss_pred             ccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHH----------------------hh-hcCCCCchHHHHHHHHHh
Q 042445           76 SISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIF----------------------LN-ISSDPATFIQGAVPQILE  132 (246)
Q Consensus        76 s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~----------------------~~-~~~~~~~~~q~~~~~~l~  132 (246)
                      |+.|.+++| ..+|++...+        +..+.+...                      .. .....+.....++.+++.
T Consensus       208 s~~K~~~~p-~G~g~l~~~~--------~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~  278 (381)
T d1elua_         208 TGHKWFAGP-AGVGGLYIHG--------DCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQ  278 (381)
T ss_dssp             ESSSTTCCC-TTCEEEEECT--------TTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHH
T ss_pred             ccccccccc-chhhHHHhhH--------HHHHhcCcccccccccccccccccccccccccccccccccchhhhhhhhhhh
Confidence            999997654 4568888776        444333210                      00 111344555555555555


Q ss_pred             hchHH-HHHHHHHHHHHHHHHHHHHhhcCCCCcccc--CCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCC
Q 042445          133 KTEEE-FFSKIIDILRETADKCCDRLKEIPCITCPK--KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGI  209 (246)
Q Consensus       133 ~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~  209 (246)
                      ..... ..+...++..++++.+.+.|++++++..+.  .+.++ ++++.++..      ...+.+.+.|+++||.++.  
T Consensus       279 ~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~-~vsf~~~~~------~~~~~i~~~L~~~gi~v~~--  349 (381)
T d1elua_         279 LHQRQGTAEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAG-LVSFTVDSP------LGHRAIVQKLEEQRIYLRT--  349 (381)
T ss_dssp             HHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSS-EEEEEECSS------SCHHHHHHHHHHTTEECEE--
T ss_pred             hHHHhcccccchhhhhhHHHHHHHHHhcCCCeEecCCCCcccc-EEEEEcCCC------CCHHHHHHHHHhCCcEEEe--
Confidence            32221 234455677888899999999998876432  23444 455555433      2445567788899998864  


Q ss_pred             CcCCCCeEEEEeec--ChHHHHHHHHHHHH
Q 042445          210 TVGLKDWLRITFAV--EPSALENGLGRMKA  237 (246)
Q Consensus       210 ~f~~~~~iRls~~~--~~~~l~~~~~~l~~  237 (246)
                       ++.++++|+|++.  +.++++++++.|++
T Consensus       350 -~~~~~~lRis~~~~nt~edid~ll~~l~e  378 (381)
T d1elua_         350 -IADPDCIRACCHYITDEEEINHLLARLAD  378 (381)
T ss_dssp             -ETTTTEEEEECCTTCCHHHHHHHHHHHTT
T ss_pred             -cCCCCEEEEecCCCCCHHHHHHHHHHHHh
Confidence             2347899999985  78999999988865

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=4.6e-15  Score=124.73  Aligned_cols=206  Identities=18%  Similarity=0.181  Sum_probs=140.0

Q ss_pred             cCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCCCcc
Q 042445           22 SGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQ  101 (246)
Q Consensus        22 ~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~  101 (246)
                      ..++++.++.|.++|++||+++|.||+++++...+..+ ....++-...   +-+++|.+ ..|+.+|.+++++      
T Consensus       214 ~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~~~-a~~~~gv~PD---i~~~gK~l-~gG~P~~av~~~~------  282 (425)
T d1sffa_         214 YASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLF-AMEQMGVAPD---LTTFAKSI-AGGFPLAGVTGRA------  282 (425)
T ss_dssp             CBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-GGGGTTSCCS---EEEECGGG-GTSSCCEEEEEEH------
T ss_pred             ccCCHHHHHHHHHHHHHcCceEEeccccccCCCcchhh-HHHhcCCCcc---ceeccccc-CCCcceEEEEEcH------
Confidence            46788999999999999999999999999876665433 2223322222   55578997 4579999999998      


Q ss_pred             hhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEe
Q 042445          102 DSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEE-EFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKL  179 (246)
Q Consensus       102 ~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~  179 (246)
                        ++.+.+... ...+++.||++.+++.+.|+...+ ...++....-...++.+.+.+++.+.+.. +. .-|.++.+.+
T Consensus       283 --~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~-vr-g~Gl~~~i~f  358 (425)
T d1sffa_         283 --EVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGD-VR-GLGAMIAIEL  358 (425)
T ss_dssp             --HHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTCTTEEE-EE-EETTEEEEEE
T ss_pred             --HHHHhhCCCCCCCCCCcCHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhHhhCCceEE-EE-ccccEEEEEE
Confidence              888776544 445668899999999999986443 34444444444445555555556653332 22 2355555666


Q ss_pred             ccccccCCCC--hHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHHhh
Q 042445          180 NYSLLEGINS--DMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDRHAE  244 (246)
Q Consensus       180 ~~~~~~~~~~--~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~~~  244 (246)
                      .........+  ....+...+.++||++.++...  .+.+||+...  ++++++++++++++++++.+|
T Consensus       359 ~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~~g~~--~n~i~~~PpL~it~~eid~~l~~l~~al~eikk  425 (425)
T d1sffa_         359 FEDGDHNKPDAKLTAEIVARARDKGLILLSCGPY--YNVLRILVPLTIEDAQIRQGLEIISQCFDEAKQ  425 (425)
T ss_dssp             BGGGCTTSBCHHHHHHHHHHHHHTTEECEEESTT--SCEEEECCCTTCCHHHHHHHHHHHHHHHHHHCC
T ss_pred             eccCccCCccHHHHHHHHHHHHHCCCEEeccCCC--CCEEEEECCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            4322111111  1233455667899998875422  5789999763  999999999999999998764

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=2.2e-15  Score=125.31  Aligned_cols=213  Identities=12%  Similarity=0.078  Sum_probs=130.1

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.++++    ++++++||||.+++   +++|.++|+++|+++++|.+|......-    .+...+   .-+++.|.
T Consensus       134 ~~~~~~i~~~T~lv~is~~~n~tG~~~~---~~~I~~~~~~~~~~~ivD~~~~~g~~~~----d~~~~~---~D~~~~s~  203 (391)
T d1p3wa_         134 KELEAAMRDDTILVSIMHVNNEIGVVQD---IAAIGEMCRARGIIYHVDATQSVGKLPI----DLSQLK---VDLMSFSG  203 (391)
T ss_dssp             HHHHHHCCTTEEEEECCSBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTBTTBCC----CTTTSC---CSEEEEES
T ss_pred             HHHHHhCCCCcEEEEEECCCCCCeeECC---HHHHHHHhccCCcEEEEeeccccCCccc----cchhcc---cccccccc
Confidence            4566667766    88999999999998   6789999999999999999998544221    111222   23677889


Q ss_pred             ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHH-------hhhcC-CCCchHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIF-------LNISS-DPATFIQGAVPQILEKTEEEFFSKIIDILRET  149 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~-------~~~~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~  149 (246)
                      .|.+|.+|  +|++...+        +....+...       ..... ..+.....++...+.. .........+++++.
T Consensus       204 ~k~~g~~g--~g~~~~~~--------~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~  272 (391)
T d1p3wa_         204 HKIYGPKG--IGALYVRR--------KPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRI-AKEEMATEMERLRGL  272 (391)
T ss_dssp             TTTTSCSS--CEEEEECB--------TTBCCCCCSSCSSCTTTTTSCSCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred             ccccCCCc--eEEEEEec--------chhcccCCcccCCccccCcccCcchhhhhhhhhhhhhH-HHHHhhHHHHHHHHH
Confidence            99987777  57777765        222211111       11111 2233333333333332 233455555667777


Q ss_pred             HHHHHHHhhcCCCCcccc--CCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--------------
Q 042445          150 ADKCCDRLKEIPCITCPK--KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--------------  213 (246)
Q Consensus       150 ~~~l~~~L~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--------------  213 (246)
                      +..+.+.|..+++.....  .......+.+.++..      +...+ ...+  +++.++.|..|..              
T Consensus       273 ~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~~~l--~~i~v~~G~~c~~~~~~~~~~l~~~g~  343 (391)
T d1p3wa_         273 RNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNYV------EGESL-IMAL--KDLAVSSGSACTSASLEPSYVLRALGL  343 (391)
T ss_dssp             HHHHHHTTTTSTTEEECSCTTTSCTTEEEEEETTS------CHHHH-HHHT--TTEECBCCCC------CCCHHHHHHTC
T ss_pred             HHHHHHHHHhhcCeeecccccccCceEEEEEeCCC------ChHHH-HHHh--CCCEEEccccccCCccchhHHHHHcCC
Confidence            888888887765543211  112233333444432      23444 3334  4677766655421              


Q ss_pred             -----CCeEEEEeec--ChHHHHHHHHHHHHHHHHHhh
Q 042445          214 -----KDWLRITFAV--EPSALENGLGRMKAFYDRHAE  244 (246)
Q Consensus       214 -----~~~iRls~~~--~~~~l~~~~~~l~~~~~~~~~  244 (246)
                           .++||+|++.  ++++++.+++.|+++++++++
T Consensus       344 ~~~~~~g~iRiS~~~~nt~edid~l~~~l~~~l~~lr~  381 (391)
T d1p3wa_         344 NDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRD  381 (391)
T ss_dssp             CHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccccCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence                 2679999995  889999999999999988764

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=6e-15  Score=123.31  Aligned_cols=212  Identities=11%  Similarity=0.068  Sum_probs=142.8

Q ss_pred             hhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccc
Q 042445            3 LINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSIS   78 (246)
Q Consensus         3 ~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~s   78 (246)
                      .++..+.++    +++..+|.||..+|   +++|.++|+++|+++++|-+++.....    ..+..++.   -+++.|..
T Consensus       155 ~~~~~i~~~t~lv~~~~v~~~tG~~~p---i~~i~~~~~~~g~~~~vD~~q~~g~~~----id~~~~~~---D~~~~s~h  224 (405)
T d1jf9a_         155 TLPTLFDEKTRLLAITHVSNVLGTENP---LAEMITLAHQHGAKVLVDGAQAVMHHP----VDVQALDC---DFYVFSGH  224 (405)
T ss_dssp             GHHHHCCTTEEEEEEESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSC----CCHHHHTC---SEEEEEGG
T ss_pred             HHHHhccCCcEEEEEecCCCcccccCc---hHHhhhHHHHcCCeeecccceeccccc----cchhhcCC---ceeecccc
Confidence            445555555    77788899999999   888899999999999999988853321    12222322   28899999


Q ss_pred             cccccCCceEEEEEeeCCCCCcchhhHHHHHHHH----------------------hhh-cCCCCchHHHHHHHHHhhch
Q 042445           79 KRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIF----------------------LNI-SSDPATFIQGAVPQILEKTE  135 (246)
Q Consensus        79 K~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~----------------------~~~-~~~~~~~~q~~~~~~l~~~~  135 (246)
                      |.+|.+|  +|++...+        +..+.+...                      ..+ ..+.+.....++..+++...
T Consensus       225 K~~Gp~G--~g~l~v~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~  294 (405)
T d1jf9a_         225 KLYGPTG--IGILYVKE--------ALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVS  294 (405)
T ss_dssp             GTTSCSS--CEEEEECH--------HHHTTCCCSSCSSSSEEECCTTTCCEECCTTGGGCCSSCCHHHHHHHHHHHHHHH
T ss_pred             ccccCCC--ceeeeech--------hhhcccCcccccccccCccccccccccccchhhhcCCCCcHHHHHHHHHHHHHHH
Confidence            9987777  78888876        555433211                      001 12456666666666666433


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--
Q 042445          136 EEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--  213 (246)
Q Consensus       136 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--  213 (246)
                      +..++...+......+.+.+.++..+.+....+..-+..+.+.++..       ..+.+...|.++||.+..|..|..  
T Consensus       295 ~~g~~~i~~~~~~L~~~~~~~l~~~~~~~~~~~~~r~~ivsf~~~~~-------~~~~~~~~L~~~gI~v~~G~~c~~~~  367 (405)
T d1jf9a_         295 ALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNLGKH-------HAYDVGSFLDNYGIAVRTGHHCAMPL  367 (405)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCTTCCSEEEEEETTC-------CHHHHHHHHHHTTEECEEECTTCHHH
T ss_pred             HhChHHHHHHHHHHHHHHHhhhhcCCcccccCCcCcCcEEEEEcCCC-------CHHHHHHHHHHCCcEEEccchhhhhH
Confidence            33456666666777777888888876554322222233444556533       334456678899999998877642  


Q ss_pred             ------CCeEEEEeec--ChHHHHHHHHHHHHHHHH
Q 042445          214 ------KDWLRITFAV--EPSALENGLGRMKAFYDR  241 (246)
Q Consensus       214 ------~~~iRls~~~--~~~~l~~~~~~l~~~~~~  241 (246)
                            ++.+|+|++.  +.++++.+++.|+++++-
T Consensus       368 ~~~~~~~g~iRiS~~~ynt~eDid~l~~~l~~i~r~  403 (405)
T d1jf9a_         368 MAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHRL  403 (405)
T ss_dssp             HHHTTCSCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence                  6889999995  788999999988887653

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=7.5e-14  Score=114.61  Aligned_cols=144  Identities=15%  Similarity=0.224  Sum_probs=106.4

Q ss_pred             hhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccc
Q 042445            3 LINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSIS   78 (246)
Q Consensus         3 ~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~s   78 (246)
                      .++..+.++    ++-.|.|||..+.+   +++|.++|+++|+++|+|++|....+..    ++ .++.   -|+++|.|
T Consensus       127 ~~~~~~~~~t~~v~~EspsNP~l~v~D---i~~i~~ia~~~g~~~vVDNT~atP~~~~----Pl-~~Ga---DiVvhS~T  195 (384)
T d1cs1a_         127 ALRAALAEKPKLVLVESPSNPLLRVVD---IAKICHLAREVGAVSVVDNTFLSPALQN----PL-ALGA---DLVLHSCT  195 (384)
T ss_dssp             HHHHHHHTCCSEEEEECSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC----GG-GGTC---SEEEEETT
T ss_pred             HHHhhccccccEEEEeccccccceecc---HHHHhhhhhhcCcEEEEeccccCccccc----cc-ccCC---CEEEEccc
Confidence            344555554    88899999999887   8999999999999999999997433221    22 1222   29999999


Q ss_pred             cccccCC-ceEEEEEeeCCCCCcchhhHHHHHHHHh-hhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 042445           79 KRGIVPG-LRLGWLVTSDPNGILQDSGIVDSIKIFL-NISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDR  156 (246)
Q Consensus        79 K~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  156 (246)
                      |.+++.| +=.|.+++++.       .+.+.++... ..+..++|...+.+.+-|+.     +.-+.++..++...+.+.
T Consensus       196 Kyi~Ghsdv~~G~vv~~~~-------~~~~~~~~~~~~~G~~~~p~~a~ll~rgL~T-----L~lRm~~~~~nA~~lA~~  263 (384)
T d1cs1a_         196 KYLNGHSDVVAGVVIAKDP-------DVVTELAWWANNIGVTGGAFDSYLLLRGLRT-----LVPRMELAQRNAQAIVKY  263 (384)
T ss_dssp             TTTTCSSCCCCEEEEESSH-------HHHHHHHHHHHHHTCBCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHH
T ss_pred             cccccCCCcccccccCCch-------hhhhhhhhhhhhhhhccccccHHHHhhccch-----hHHHHHHHHHHHHHHHHh
Confidence            9998876 44455566552       5556666553 34557899999988888885     777777889999999999


Q ss_pred             hhcCCCCccccCC
Q 042445          157 LKEIPCITCPKKP  169 (246)
Q Consensus       157 L~~~~~~~~~~~~  169 (246)
                      |+..|.+..+..|
T Consensus       264 L~~hp~V~~V~yP  276 (384)
T d1cs1a_         264 LQTQPLVKKLYHP  276 (384)
T ss_dssp             HTTCTTEEEEECT
T ss_pred             cccCCceeeeeec
Confidence            9988777655555

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=7.1e-15  Score=122.63  Aligned_cols=196  Identities=12%  Similarity=0.052  Sum_probs=133.2

Q ss_pred             cCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCCCcc
Q 042445           22 SGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQ  101 (246)
Q Consensus        22 ~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~  101 (246)
                      ..++++.+++|.++|++||+++|.||++.+|...+..+ ....++-...   +-+++|.++...+.+|.+++++      
T Consensus       204 ~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~-a~~~~gv~PD---i~~~gK~l~gG~~p~~av~~~~------  273 (404)
T d2byla1         204 VVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWL-AVDYENVRPD---IVLLGKALSGGLYPVSAVLCDD------  273 (404)
T ss_dssp             BCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-GGGGGTCCCS---EEEECGGGGTTSSCCEEEEECH------
T ss_pred             ccCCHHHHHHHHHHHHhcCeEEEeeccccccccccccc-hhhhcCCCCC---EEEECchhhCCCccceeeeech------
Confidence            56778999999999999999999999999987766543 3333332223   3378899765558999999998      


Q ss_pred             hhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCC--CCccccCCCCceEEEEE
Q 042445          102 DSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIP--CITCPKKPEGSMFVMVK  178 (246)
Q Consensus       102 ~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--~~~~~~~~~~g~~~~~~  178 (246)
                        ++.+.+... ...+++.||++.+++.+.|+...+..   ..+..++..+.+.+.|+++.  .+.. +. .-|++.-+.
T Consensus       274 --~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~---l~~~~~~~g~~l~~~l~~l~~~~i~~-vR-g~Gl~~~i~  346 (404)
T d2byla1         274 --DIMLTIKPGEHFSTYGGNPLGCRVAIAALEVLEEEN---LAENADKLGIILRNELMKLPSDVVTA-VR-GKGLLNAIV  346 (404)
T ss_dssp             --HHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTSCTTTEEE-EE-EETTEEEEE
T ss_pred             --hhhhccCCCCCCcCCCcCHHHHHHHHHHHHHHHhcC---chhhhhHhhHHHHHHHHhhcccccee-ee-ecccEEEEE
Confidence              777766544 33455889999999999998543322   23334444555666666542  1211 11 234555555


Q ss_pred             eccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHHHHHH
Q 042445          179 LNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~~~~  242 (246)
                      +....   .....++ ...+.++||.+.|..    .+.+||+..  .+++++++++++|+++++++
T Consensus       347 ~~~~~---~~~~~~~-~~~l~~~Gvl~~~~~----~~~i~l~PpL~it~~~id~~~~~l~~al~~f  404 (404)
T d2byla1         347 IKETK---DWDAWKV-CLRLRDNGLLAKPTH----GDIIRFAPPLVIKEDELRESIEIINKTILSF  404 (404)
T ss_dssp             ECCCS---SCCHHHH-HHHHHHTTEECEEEE----TTEEEECCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred             EecCC---chhHHHH-HHHHHhCCeEEecCC----CCEEEEECCcCCCHHHHHHHHHHHHHHHHcC
Confidence            64321   1124444 445678999988743    578999866  39999999999999998753

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.61  E-value=3.3e-14  Score=116.71  Aligned_cols=145  Identities=14%  Similarity=0.082  Sum_probs=108.2

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      |.+++++.++    ++-.|.||+..+.+   +++|.++|+++|+++|+|++|+.....    .++. ++.   -|+++|+
T Consensus       124 ~~~~~ai~~~t~li~~EtpsNP~l~v~D---i~~i~~iA~~~g~~~vVDnT~atP~~~----~Pl~-~Ga---DiVvhS~  192 (380)
T d1ibja_         124 DEVAAAIGPQTKLVWLESPTNPRQQISD---IRKISEMAHAQGALVLVDNSIMSPVLS----RPLE-LGA---DIVMHSA  192 (380)
T ss_dssp             HHHHHHCCSSEEEEEECSSCTTTCCCCC---HHHHHHHHHTTTCEEEEECTTTCTTTC----CGGG-TTC---SEEEEET
T ss_pred             HHHHHHhccCccEEEecccccccccccc---HHHHHHHHHHcCCeEEeeccccccccc----cccc-cCC---CEEEecc
Confidence            3455555554    88999999999987   899999999999999999999854422    1221 222   2999999


Q ss_pred             ccccccCCc-eEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445           78 SKRGIVPGL-RLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD  155 (246)
Q Consensus        78 sK~~~~~g~-r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  155 (246)
                      +|.+++.+- =.|.++..+.       .+.+.++.... .+..++|.....+.+-++.     +..+.++..++...+.+
T Consensus       193 TKyi~GhsDv~~G~v~~~~~-------~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~T-----l~lRm~~~~~nA~~lA~  260 (380)
T d1ibja_         193 TKFIAGHSDVMAGVLAVKGE-------KLAKEVYFLQNSEGSGLAPFDCWLCLRGIKT-----MALRIEKQQENARKIAM  260 (380)
T ss_dssp             TTTTTCSSCCCCEEEEECSH-------HHHHHHHHHHHHTTCBCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHH
T ss_pred             cceeccccCccccccccchh-------hHHHHHHhhccccCCcCCHHHHHHHHhcchh-----hhhhHHHHHHHHHHHHH
Confidence            999998774 4455555542       56677766644 4446899999999888886     77788888999999999


Q ss_pred             HhhcCCCCccccCC
Q 042445          156 RLKEIPCITCPKKP  169 (246)
Q Consensus       156 ~L~~~~~~~~~~~~  169 (246)
                      .|++.|.+..+..|
T Consensus       261 ~L~~hp~V~~V~yP  274 (380)
T d1ibja_         261 YLSSHPRVKKVYYA  274 (380)
T ss_dssp             HHHTCTTCCEEECT
T ss_pred             HHHhCCCeeEEecc
Confidence            99988776654444

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.59  E-value=3.8e-15  Score=122.38  Aligned_cols=206  Identities=12%  Similarity=0.152  Sum_probs=121.5

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      ++++|+||||.+.+   +++|+++|++||+++++|++|+....+    ..+..++   ..+++.|++|.|+++| ++||+
T Consensus       145 ~i~~~~n~tG~~~~---l~~I~~ia~~~~i~livD~a~~~g~~~----~~~~~~g---~D~~~~S~~K~~~~~g-~~g~l  213 (364)
T d2e7ja1         145 LITYPDGNYGNLPD---VKKIAKVCSEYDVPLLVNGAYAIGRMP----VSLKEIG---ADFIVGSGHKSMAASG-PIGVM  213 (364)
T ss_dssp             EEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTTBTTBC----CCHHHHT---CSEEEEEHHHHSSCCS-SCEEE
T ss_pred             EeecCCCCCceeec---chhheeccccccchhhccccchhhhhh----hcccccc---cceeeeccccccCCCC-CEEEE
Confidence            78899999999987   789999999999999999999754322    1122222   2278889999998877 79999


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhh---------hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLN---------ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPC  162 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~  162 (246)
                      ++++        ++++.+.....         .....+.....++...+.. ..+++++..+. .++++.+.+.|++++ 
T Consensus       214 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~-~~~~~~~~~~l~~~g-  282 (364)
T d2e7ja1         214 GMKE--------EWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPH-VRERIKRWDEE-VEKARRFAAEMEKLG-  282 (364)
T ss_dssp             EECT--------TTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHH-HHHHGGGHHHH-HHHHHHHHHHHHHTT-
T ss_pred             EECH--------HHHHHHHhhccccCcccccccccccchhHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHHHHHcC-
Confidence            9988        55554432211         0112222333333344432 12333333333 345666777777763 


Q ss_pred             Cccc-cCCCCceEEEEEecccc-c-cCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEe-ecChHHHHHHHHHHHHH
Q 042445          163 ITCP-KKPEGSMFVMVKLNYSL-L-EGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITF-AVEPSALENGLGRMKAF  238 (246)
Q Consensus       163 ~~~~-~~~~~g~~~~~~~~~~~-~-~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~-~~~~~~l~~~~~~l~~~  238 (246)
                      +... ..|......+...+... + .............+...|+...   .++....+|++. +.+++++++++++|++.
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~g~~~~~~~~~~~~t~edid~~~~~l~ei  359 (364)
T d2e7ja1         283 IKQLGDNPHNHDLMFFHAEVLYEISKKAKGGRFFLYRELKSRKIHGI---KPGLTRYFKLSTYGLSDEEVDYVLNAFKEI  359 (364)
T ss_dssp             CEEESSSSCCSSEEEEECHHHHHHHHHSSSGGGHHHHHHHHTTEECS---CTTCCSEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred             CeecCCCCCCcceEEEeccchHHHHHHhhccchHHHHHHHhcCCcee---cCCCcceEEEeccCCCHHHHHHHHHHHHHH
Confidence            3321 23333334443332110 0 0000122334555666776432   223356777764 45889999999999999


Q ss_pred             HHHH
Q 042445          239 YDRH  242 (246)
Q Consensus       239 ~~~~  242 (246)
                      ++++
T Consensus       360 ~~~y  363 (364)
T d2e7ja1         360 IEKY  363 (364)
T ss_dssp             HHHC
T ss_pred             HHHh
Confidence            9875

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=1.5e-14  Score=121.43  Aligned_cols=197  Identities=12%  Similarity=0.062  Sum_probs=135.7

Q ss_pred             CCCcc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCC
Q 042445           18 FHVGS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDP   96 (246)
Q Consensus        18 NPtG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~   96 (246)
                      +-.|. .+|++.+++|.++|++||+++|.||++.++...+..+ ....++-...   +-+++|.++..++.+|.+++.+ 
T Consensus       216 ~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~-~~~~~~v~PD---i~~~gK~l~gG~~p~~av~~~~-  290 (429)
T d1s0aa_         216 GAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLF-ACEHAEIAPD---ILCLGKALTGGTMTLSATLTTR-  290 (429)
T ss_dssp             CTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-GGGGGTCCCS---EEEECGGGGTSSSCCEEEEECH-
T ss_pred             cCCCccCCCHHHHHHHHHHHHHcCcceehhhcccccccccccc-ccccceeccc---ccccccccccccccccchhhHH-
Confidence            33344 5788999999999999999999999999997666433 3333332222   4456799777779999999998 


Q ss_pred             CCCcchhhHHHHHHHHh------hhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc---CCCCcccc
Q 042445           97 NGILQDSGIVDSIKIFL------NISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKE---IPCITCPK  167 (246)
Q Consensus        97 ~~~~~~~~~~~~l~~~~------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~---~~~~~~~~  167 (246)
                             ++.+.+....      ..+++.||++.+++.+.|+...+.   ...+..++.-+.+.+.|++   .+.+.. +
T Consensus       291 -------~i~~~~~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~i~~~---~~~~~~~~~g~~l~~~L~~l~~~~~v~~-v  359 (429)
T d1s0aa_         291 -------EVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESG---DWQQQVADIEVQLREQLAPARDAEMVAD-V  359 (429)
T ss_dssp             -------HHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHGGGGGCTTEEE-E
T ss_pred             -------HHHhccCCCCCcceeecCCCCCCcccchhhhccccccccc---cccchhhHHHHHHHHHHHHhccCCceEE-E
Confidence                   8888776431      235578999999999999854321   2233334444455555544   333321 1


Q ss_pred             CCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHHHHHH
Q 042445          168 KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       168 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~~~~  242 (246)
                      . .-|++..+++..+.      ....+...+.++|+.+.|.     .+.+||+..  .+++++++++++|.+++++.
T Consensus       360 r-g~Gl~~~~e~~~~~------~~~~~~~~~~~~Gl~~~~~-----g~~i~~~Ppl~it~~eid~~~~~l~~al~e~  424 (429)
T d1s0aa_         360 R-VLGAIGVVETTHPV------NMAALQKFFVEQGVWIRPF-----GKLIYLMPPYIILPQQLQRLTAAVNRAVQDE  424 (429)
T ss_dssp             E-EETTEEEEEESSCB------CHHHHHHHHHHTTEECCCB-----TTEEEECCCTTCCHHHHHHHHHHHHHHTSSG
T ss_pred             e-ecccEEEEEecCcc------cHHHHHHHHHHCCcEEEec-----CCEEEEeCCcCCCHHHHHHHHHHHHHHHHhh
Confidence            2 23566666776442      4455667788899998763     368999866  39999999999999998653

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=99.58  E-value=3e-13  Score=111.28  Aligned_cols=145  Identities=15%  Similarity=0.135  Sum_probs=107.8

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.++++    ++-.|.||+..+.+   +++|+++|+++|+++++|.+|+.....    .++ .++.+   |+++|.
T Consensus       139 ~~~~~~i~~~Tklv~~Esp~NP~l~v~D---i~~i~~iA~~~gi~~vvDnT~atP~~~----~Pl-~~GaD---ivihS~  207 (397)
T d1y4ia1         139 EEIRAAMRPETKVVYIETPANPTLSLVD---IETVAGIAHQQGALLVVDNTFMSPYCQ----QPL-QLGAD---IVVHSV  207 (397)
T ss_dssp             HHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTC----CGG-GGTCS---EEEEET
T ss_pred             HHHHHhcCCCCcEEEecCCcccceeecc---cHHHHHHhhcCCceEEecCcccCcccC----cch-hcCCC---EEEEeh
Confidence            4566777665    88899999988877   899999999999999999998854322    122 12222   999999


Q ss_pred             ccccccCCceEEEEEeeCCCCCcchhhHHHHHH--HHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIK--IFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCC  154 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~--~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~  154 (246)
                      +|.+++.+--+|.+++.+.       +.+.+++  ..+. .+..++|...+.+.+-|+.     +.-+.++..++...+.
T Consensus       208 TKyi~Ghsdvl~G~v~~~~-------~~~~~~r~~~~~~~~G~~l~p~~a~l~~rgl~T-----L~lRm~~~~~nA~~lA  275 (397)
T d1y4ia1         208 TKYINGHGDVIGGIIVGKQ-------EFIDQARFVGLKDITGGCMSPFNAWLTLRGVKT-----LGIRMERHCENALKIA  275 (397)
T ss_dssp             TTTTTCSSCCCCEEEEECH-------HHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHH
T ss_pred             hhhcCCCcceeeeccCCCH-------HHHHHHHHHHHHhCcCCcCCHHHHHHHHcCcCc-----HHHHHHHHHHHHHHHH
Confidence            9999887755555444442       6666544  3333 3557899999999998885     7777778899999999


Q ss_pred             HHhhcCCCCccccCC
Q 042445          155 DRLKEIPCITCPKKP  169 (246)
Q Consensus       155 ~~L~~~~~~~~~~~~  169 (246)
                      +.|+++|.+..+..|
T Consensus       276 ~~L~~hp~V~~V~yP  290 (397)
T d1y4ia1         276 RFLEGHPSITRVYYP  290 (397)
T ss_dssp             HHHHTCTTEEEEECT
T ss_pred             HHHHhCCCcCeEeCC
Confidence            999998877654444

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.58  E-value=3.2e-13  Score=111.26  Aligned_cols=135  Identities=12%  Similarity=0.081  Sum_probs=103.5

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      ++-+|.|||..+.+   +++|.++|+++|+++|+|++|+......    ++ .++.+   |+++|++|.+++.+--+|-+
T Consensus       158 ~~EspsNP~l~v~D---i~~ia~ia~~~g~~~vVDnT~atP~~~~----Pl-~~GaD---iVihS~TKy~~Ghsdv~~G~  226 (398)
T d1qgna_         158 FTESPTNPFLRCVD---IELVSKLCHEKGALVCIDGTFATPLNQK----AL-ALGAD---LVLHSATKFLGGHNDVLAGC  226 (398)
T ss_dssp             EEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC----TT-TTTCS---EEEECTTTTTTCSSSCCCEE
T ss_pred             EccCccccccccch---HHHHHHHHhhcCCEEEecceeeccccCC----ch-hhCCC---EEEEechhhcCcccceeehh
Confidence            78999999998877   9999999999999999999997543221    21 12222   89999999999877544444


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKP  169 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~  169 (246)
                      ++.+.       +++..++.... .+..++|.....+.+-++.     +..+.++..++...+.+.|++.|.+..+..|
T Consensus       227 v~~~~-------~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~T-----L~lRm~~~~~nA~~lA~~L~~hp~V~~V~yP  293 (398)
T d1qgna_         227 ISGPL-------KLVSEIRNLHHILGGALNPNAAYLIIRGMKT-----LHLRVQQQNSTALRMAEILEAHPKVRHVYYP  293 (398)
T ss_dssp             EEECH-------HHHHHHHHHHHHHCCCCCHHHHHHHHHHGGG-----HHHHHHHHHHHHHHHHHHHHTCTTEEEEECT
T ss_pred             hcchh-------hhhhhhhhhcccCCCcCCHHHHHHHHhcchH-----HHHHHHHHHHHHHHHHHHHHhCCCeeecCCC
Confidence            44442       77787777643 4557899999999888885     7777888899999999999988877654444

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

Probab=99.56  E-value=2.6e-13  Score=111.62  Aligned_cols=144  Identities=16%  Similarity=0.169  Sum_probs=108.9

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.++++++++    ++-+|+|||..+.+   +++|+++|+++|+++++|.+|+...+..    ++ .++.+   |+++|.
T Consensus       135 ~~~~~ai~~~t~lv~~Esp~NP~l~v~D---i~~i~~ia~~~g~~~vvDnT~atP~~~~----Pl-~~GaD---ivihS~  203 (392)
T d1gc0a_         135 QALEAAMTPATRVIYFESPANPNMHMAD---IAGVAKIARKHGATVVVDNTYCTPYLQR----PL-ELGAD---LVVHSA  203 (392)
T ss_dssp             HHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHGGGTCEEEEECTTTHHHHCC----GG-GGTCS---EEEEET
T ss_pred             HHHHHhCCCCCeEEEecccccceeeecc---hHHHHHHHHhcCCEEEEecCccCccccC----hH-HhCCC---EEEEec
Confidence            4566777765    88999999999987   9999999999999999999998544321    22 22222   999999


Q ss_pred             ccccccCC-ceEEEEEeeCCCCCcchhhHHHHHH--HHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 042445           78 SKRGIVPG-LRLGWLVTSDPNGILQDSGIVDSIK--IFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKC  153 (246)
Q Consensus        78 sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~l~--~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l  153 (246)
                      +|.+++.+ .-.|.+++++        +.+.+++  ..+. .+..++|.....+.+-++.     +..+.++..++...+
T Consensus       204 TKyi~Ghsd~~~G~v~~~~--------~~~~~~r~~~~~~~~G~~~~p~da~ll~rgl~T-----L~lRm~~~~~nA~~l  270 (392)
T d1gc0a_         204 TKYLSGHGDITAGIVVGSQ--------ALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKT-----LNLRMDRHCANAQVL  270 (392)
T ss_dssp             TTTTTCSSSCCCEEEEECH--------HHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHHH
T ss_pred             ceeecCCcccccccccchh--------HHHHHHHHHHHHHccCCcCChhhHHHHHhcccc-----HHHHHHHHHHHHHHH
Confidence            99998755 5556666666        7776654  3333 3557899999999888885     777788889999999


Q ss_pred             HHHhhcCCCCccccCC
Q 042445          154 CDRLKEIPCITCPKKP  169 (246)
Q Consensus       154 ~~~L~~~~~~~~~~~~  169 (246)
                      .+.|++.|.+..+..|
T Consensus       271 A~~L~~hp~V~~V~yP  286 (392)
T d1gc0a_         271 AEFLARQPQVELIHYP  286 (392)
T ss_dssp             HHHHHTCTTEEEEEEC
T ss_pred             HHHHHhCCCccEEeec
Confidence            9999988766644443

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=99.56  E-value=1.1e-13  Score=115.71  Aligned_cols=213  Identities=12%  Similarity=0.109  Sum_probs=143.4

Q ss_pred             hhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccc
Q 042445            3 LINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSIS   78 (246)
Q Consensus         3 ~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~s   78 (246)
                      .+++.+.++    .++.-+|-||..++   +++|.++|+++|+++++|-+++.....    ..+..++.   -+++.|..
T Consensus       155 ~l~~~~~~~t~lv~i~~~~~~tG~~~p---~~~i~~~~~~~g~~~ivDa~q~~g~~~----id~~~~~~---D~~~~s~h  224 (408)
T d1t3ia_         155 HFKTLLSEKTKLVTVVHISNTLGCVNP---AEEIAQLAHQAGAKVLVDACQSAPHYP----LDVQLIDC---DWLVASGH  224 (408)
T ss_dssp             HHHHHCCTTEEEEEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTTTTSC----CCHHHHTC---SEEEEEGG
T ss_pred             HhhhccCCCceEEEEecccccccccCc---HHHHhhhhhccCceeeeccceeccccc----ccccccCC---ceEEeccc
Confidence            444555554    66677899999999   778889999999999999988753321    12222222   28889999


Q ss_pred             cccccCCceEEEEEeeCCCCCcchhhHHHHHHHHh---------------------hh-cCCCCchHHHHHHHHHhhchH
Q 042445           79 KRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFL---------------------NI-SSDPATFIQGAVPQILEKTEE  136 (246)
Q Consensus        79 K~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~---------------------~~-~~~~~~~~q~~~~~~l~~~~~  136 (246)
                      |.+|.+|  +|+++..+        +....+....                     .+ .++.+.....++..+++...+
T Consensus       225 K~~gp~G--~g~l~v~~--------~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~~~~~  294 (408)
T d1t3ia_         225 KMCAPTG--IGFLYGKE--------EILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTD  294 (408)
T ss_dssp             GTTSCTT--CEEEEECH--------HHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHH
T ss_pred             cccCCCC--ccccccch--------hhhhcCCceecCCcccccccccccccCCchhhhcCCcHHHHHHHHHHHHHHHHHH
Confidence            9876565  78888887        6655432110                     01 124455556666666653333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC----CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcC
Q 042445          137 EFFSKIIDILRETADKCCDRLKEIPCITCPKKP----EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG  212 (246)
Q Consensus       137 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~  212 (246)
                      .-+++.++...+..+.+.+.++..+++..+...    .-+..+.+.++..       +.+.+...|.++||.+..|..|.
T Consensus       295 ~g~~~i~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~iv~f~~~~~-------~~~~v~~~L~~~gI~v~~G~~c~  367 (408)
T d1t3ia_         295 LGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVAGL-------HASDVATMVDQDGIAIRSGHHCT  367 (408)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEETTB-------CHHHHHHHHHTTTEECBCSCTTC
T ss_pred             cCHHHHHHHHHHHHhHHhhhhccCccccccCCCccccCcceEEEEEeCCC-------CHHHHHHHHhhCCcEEecCcccc
Confidence            446667777777888888888887766532211    1233444445532       34445667889999999887764


Q ss_pred             --------CCCeEEEEeec--ChHHHHHHHHHHHHHHHHH
Q 042445          213 --------LKDWLRITFAV--EPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       213 --------~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~  242 (246)
                              .++.+|+|++.  +.++++.+++.|++.++.+
T Consensus       368 ~~~~~~~~~~g~vRiS~~~ynt~~did~li~~L~~~~~~f  407 (408)
T d1t3ia_         368 QPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATIRFF  407 (408)
T ss_dssp             HHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             cHHHHhhcCCccEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence                    26889999995  8999999999999998764

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=99.55  E-value=1.4e-13  Score=111.03  Aligned_cols=201  Identities=8%  Similarity=-0.006  Sum_probs=121.8

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCcccccc-CCcccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVF-GSIVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~-~~~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      +..+++|++|...+.++++++.++|++||+++++|+++..+.+..... .+... ..........+..|..++.+   +.
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  215 (345)
T d1v72a1         140 VSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGC-SPAEMTWKAGVDALSFGATKNGVLAA---EA  215 (345)
T ss_dssp             EEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTC-CTTTTTGGGTCCEEEECCGGGTCSSC---EE
T ss_pred             eeeeccccccccccchhhhhHHHHHHhcCceeeecccccceecccccc-CHHHhhccccccccccCccccccccc---cc
Confidence            555666899999999999999999999999999999998655443211 11111 11122233333444322222   33


Q ss_pred             EEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445           91 LVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKP  169 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~  169 (246)
                      ......       ......... .......+.....++..... ..+....+......++.+.+.+.+.+++++. ...|
T Consensus       216 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~-~~~p  286 (345)
T d1v72a1         216 IVLFNT-------SLATEMSYRRKRAGHLSSKMRFLSAQIDAY-LTDDLWLRNARKANAAAQRLAQGLEGLGGVE-VLGG  286 (345)
T ss_dssp             EEESSG-------GGHHHHHHHHHHTTCCCSSTHHHHHHHHHH-TSTTHHHHHHHHHHHHHHHHHHHHTTCTTEE-EESC
T ss_pred             cccchh-------hhhhhccccccccccccchhhHHhhhhHHH-HHHhhhhhhccchhhHHHHHHHHHHhcCCcE-eccC
Confidence            333331       222222222 22222333333333332222 2233444555556677778888888888887 4667


Q ss_pred             CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHH
Q 042445          170 EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAF  238 (246)
Q Consensus       170 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~  238 (246)
                      .++++++++++.          +. .+.|.++|+.+.++.  ..++.+||+++.  ++|+++++++.|+++
T Consensus       287 ~~~niv~~~~~~----------~~-~~~L~~~gi~v~~~~--~~~~~lR~~~~~~~T~edid~~le~lr~a  344 (345)
T d1v72a1         287 TEANILFCRLDS----------AM-IDALLKAGFGFYHDR--WGPNVVRFVTSFATTAEDVDHLLNQVRLA  344 (345)
T ss_dssp             CCSSEEEEEECH----------HH-HHHHHHTTCBCBCSS--SSTTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred             CCccEEEEEcCH----------HH-HHHHHHcCCCccccC--CCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            788899887752          23 334667898875432  237899999984  899999999988764

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=1.8e-12  Score=106.66  Aligned_cols=144  Identities=11%  Similarity=0.083  Sum_probs=104.2

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHH--cCCEEEEccccCCcccCCCCCccccccCCcccEEEEc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKK--LGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLG   75 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~--~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~   75 (246)
                      +.+++.+.++    ++-+|.||+..+.+   ++++.++|++  +|+++|+|++|+......    ++. ++.   -|+++
T Consensus       134 ~~~~~~i~~~t~~i~~EtpsNP~l~v~D---i~~i~~~a~~~~~g~~~vVDnT~atP~~~~----Pl~-~Ga---Divvh  202 (391)
T d1cl1a_         134 ADIVKHLQPNTKIVFLESPGSITMEVHD---VPAIVAAVRSVVPDAIIMIDNTWAAGVLFK----ALD-FGI---DVSIQ  202 (391)
T ss_dssp             GGGGGTCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHCTTCEEEEECTTTTTTSSC----GGG-GTC---SEEEE
T ss_pred             cccccccccccceeeecccCcccccccc---cHHHHHHHHhccCCcEEEEeccccchhhhc----ccc-ccc---ceEEe
Confidence            3455566654    88899999999887   7788888866  499999999998644321    221 222   29999


Q ss_pred             ccccccccCCce-EEEEEeeCCCCCcchhhHHHHHHHHh-hhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 042445           76 SISKRGIVPGLR-LGWLVTSDPNGILQDSGIVDSIKIFL-NISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKC  153 (246)
Q Consensus        76 s~sK~~~~~g~r-~G~i~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l  153 (246)
                      |.+|.+++.+-- .|.++.++        +..+.+.... ..+..++|.....+.+-++.     +..+.++..++...+
T Consensus       203 S~TKy~~GhsdvlgG~vv~~~--------~~~~~~~~~~~~~G~~~~p~~a~ll~rgl~T-----L~lR~~~~~~nA~~v  269 (391)
T d1cl1a_         203 AATKYLVGHSDAMIGTAVCNA--------RCWEQLRENAYLMGQMVDADTAYITSRGLRT-----LGVRLRQHHESSLKV  269 (391)
T ss_dssp             ETTTTTTCSSSCCCEEEEECT--------TTHHHHHHHHHHTTCCCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHHH
T ss_pred             ecchhccccccccccceeccc--------cccccchhhhhcccccCCchhhhhhhccchh-----HHHHHHHHHHHHHHH
Confidence            999999987644 45555554        6666666553 34547788888888887775     777777889999999


Q ss_pred             HHHhhcCCCCccccCC
Q 042445          154 CDRLKEIPCITCPKKP  169 (246)
Q Consensus       154 ~~~L~~~~~~~~~~~~  169 (246)
                      .+.|+++|.+..+..|
T Consensus       270 A~~L~~hp~V~~V~yP  285 (391)
T d1cl1a_         270 AEWLAEHPQVARVNHP  285 (391)
T ss_dssp             HHHHHTCTTEEEEECT
T ss_pred             HHHHHhcccccccccc
Confidence            9999988877654444

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=99.50  E-value=3e-13  Score=112.04  Aligned_cols=191  Identities=18%  Similarity=0.222  Sum_probs=131.8

Q ss_pred             Ccc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCC
Q 042445           20 VGS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNG   98 (246)
Q Consensus        20 tG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~   98 (246)
                      .|. .++++.+++|.++|++||+++|.||+++++...|..+ ....++-...   +-+++|.+ ..|+.++.+++.+   
T Consensus       190 ~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~-~~~~~~v~PD---i~~~gK~l-~gG~~~~~~~~~~---  261 (387)
T d1vefa1         190 GGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRF-AFEHFGIVPD---ILTLAKAL-GGGVPLGVAVMRE---  261 (387)
T ss_dssp             TTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-THHHHTCCCS---EEEECGGG-GTTSSCEEEEEEH---
T ss_pred             CCCccCCHHHHHHHHHHHHHcCceEEecccccccCccCCCc-ccccCCcCCc---eeeecccC-CCCccccccccce---
Confidence            354 5778999999999999999999999999987666433 2223332222   44567995 5678899999988   


Q ss_pred             CcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCC--CCccccCCCCceEE
Q 042445           99 ILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIP--CITCPKKPEGSMFV  175 (246)
Q Consensus        99 ~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--~~~~~~~~~~g~~~  175 (246)
                           ++++.+... ...+++.||++.+++.+.|+.-.+   ....+..++..+.+.+.|+++.  .+.. +. .-|++.
T Consensus       262 -----~~~~~~~~~~~g~T~~gnPla~aaa~a~L~~l~~---~~~~~~v~~~g~~l~~~L~~l~~~~v~~-vr-g~Gl~~  331 (387)
T d1vefa1         262 -----EVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLER---TRLWERAAELGPWFMEKLRAIPSPKIRE-VR-GMGLMV  331 (387)
T ss_dssp             -----HHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHH---HTTHHHHHHHHHHHHHHHHTSCCTTEEE-EE-EETTEE
T ss_pred             -----eeeeccccCCccccCCCCcchhhhcccchhhccc---ccccchHhhhhHHHHHHHHhcCCCceEE-Ee-ecceEE
Confidence                 777665443 344568899999999999985332   2233444555666777777642  2221 11 235666


Q ss_pred             EEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHHH
Q 042445          176 MVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAFY  239 (246)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~  239 (246)
                      -++++..       ....+..++.+.|+.+.+..    .+.+|++..  .+++++++++++|++++
T Consensus       332 ~ie~~~~-------~~~~~~~~~~~~g~l~~~~g----~~~ir~~Ppl~it~~~ld~~~~~i~~aL  386 (387)
T d1vefa1         332 GLELKEK-------AAPYIARLEKEHRVLALQAG----PTVIRFLPPLVIEKEDLERVVEAVRAVL  386 (387)
T ss_dssp             EEEESSC-------SHHHHHHHHHHHCEECEESS----TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             EEEEeCC-------chHHHHHHHHHCCCeEEecC----CCEEEEECCccCCHHHHHHHHHHHHHHh
Confidence            6777653       34555667778888877643    578999876  39999999999999886

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.50  E-value=2.3e-12  Score=106.06  Aligned_cols=140  Identities=15%  Similarity=0.155  Sum_probs=101.9

Q ss_pred             hhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHH----HcCCEEEEccccCCcccCCCCCccccccCCcccEEEE
Q 042445            3 LINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAK----KLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTL   74 (246)
Q Consensus         3 ~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~----~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~   74 (246)
                      .+++.++++    ++-.|.||+..+.+   +++|+++|+    ++|+++|+|++|.......    ++ .++.+   |++
T Consensus       130 ~~~~~i~~~t~lv~~EspsNP~l~v~D---i~~ia~~a~~~~~~~g~~lvVDnT~atP~~~~----Pl-~~GAD---iVv  198 (393)
T d1n8pa_         130 DLPQLIKENTKLVWIETPTNPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTFLSPYISN----PL-NFGAD---IVV  198 (393)
T ss_dssp             HHHHHSCSSEEEEEECSSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTTTHHHHCC----GG-GGTCS---EEE
T ss_pred             HHHHHhhhhcceeEecCcchhhhhccc---hhhhhhhhhhhcccCCceEEEecCccCcccCC----ch-hhCCC---EEE
Confidence            455666655    88899999999988   777777777    6789999999998544221    22 12222   999


Q ss_pred             cccccccccCC-ceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 042445           75 GSISKRGIVPG-LRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADK  152 (246)
Q Consensus        75 ~s~sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~  152 (246)
                      +|++|.+++.+ +-.|.++..+.       ++.++++.... .+..++|.....+.+-++.     +..+.++..++...
T Consensus       199 hS~TKyi~GhsDv~~G~v~~~~~-------~~~~~l~~~~~~~G~~~~p~~a~ll~rgl~T-----l~lR~~~~~~nA~~  266 (393)
T d1n8pa_         199 HSATKYINGHSDVVLGVLATNNK-------PLYERLQFLQNAIGAIPSPFDAWLTHRGLKT-----LHLRVRQAALSANK  266 (393)
T ss_dssp             EETTTTTTCSSCCCCEEEEESCH-------HHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHH
T ss_pred             EccccccCCCCccccceeeecch-------hHHHHHHHHHhhcCCCCChHHHHHHHhCCcc-----hhhHHHHHHHHHHH
Confidence            99999998866 55566555552       66777877644 4557899998888888885     77777778889999


Q ss_pred             HHHHhhcC-CCCcc
Q 042445          153 CCDRLKEI-PCITC  165 (246)
Q Consensus       153 l~~~L~~~-~~~~~  165 (246)
                      +.+.|+.. +.+..
T Consensus       267 lA~~L~~~~~~V~~  280 (393)
T d1n8pa_         267 IAEFLAADKENVVA  280 (393)
T ss_dssp             HHHHHTSCTTTEEE
T ss_pred             HHHHHHhccCcEEE
Confidence            99999753 44443

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=7.8e-13  Score=109.42  Aligned_cols=210  Identities=12%  Similarity=0.042  Sum_probs=135.7

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      ++++.+|.||+..+   +++|.++|+++|+++++|.+++.....    ..+   ...+.-+++.|..|.+++|+ .+|++
T Consensus       149 ~~~~~~n~tG~i~p---i~~i~~~~~~~g~~~~vD~~qs~g~~~----~d~---~~~~~D~~~~s~~K~~~gp~-g~~~~  217 (388)
T d1h0ca_         149 FLTHGESSTGVLQP---LDGFGELCHRYKCLLLVDSVASLGGTP----LYM---DRQGIDILYSGSQKALNAPP-GTSLI  217 (388)
T ss_dssp             EEESEETTTTEECC---CTTHHHHHHTTTCEEEEECTTTTTTSC----CCT---TTTTCSEEEEESSSTTCCCT-TCEEE
T ss_pred             EEeeeeeccccccC---HHHHHHHhhcccccceecccccccccc----ccc---cccccceecccccccccCCC-ceEEE
Confidence            66677899999988   778888899999999999988854322    111   22222377788888876654 35666


Q ss_pred             EeeCCCCCcchhhHHHHHHHH-----------------h------h-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHH
Q 042445           92 VTSDPNGILQDSGIVDSIKIF-----------------L------N-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILR  147 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~-----------------~------~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~  147 (246)
                      +.+.        ..++.+...                 .      . ....++.....++..++....+.-++...++.+
T Consensus       218 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~~~g~~~~~~~~~  289 (388)
T d1h0ca_         218 SFSD--------KAKKKMYSRKTKPFSFYLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHR  289 (388)
T ss_dssp             EECH--------HHHHHHTTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             eecH--------HHHHhhhhccccccccccccchhhhhhhhccccccccccccHHHHHHHHHHHHHHHHhcccccccccc
Confidence            6665        555444221                 0      0 111234444444444444322334667777777


Q ss_pred             HHHHHHHHHhhcCCCCccccCC--CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEE-eec-
Q 042445          148 ETADKCCDRLKEIPCITCPKKP--EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRIT-FAV-  223 (246)
Q Consensus       148 ~~~~~l~~~L~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls-~~~-  223 (246)
                      +..+.+.+.+++.+.......+  .....+.+.++...     +..++...++.++||.+..|..+...+.+|+| ++. 
T Consensus       290 ~l~~~l~~~~~~~g~~~~~~~~~~rs~~i~~~~~p~~~-----~~~~~~~~L~~~~gI~v~~G~~~~~~~~iRis~~g~~  364 (388)
T d1h0ca_         290 EAAAYLHGRLQALGLQLFVKDPALRLPTVTTVAVPAGY-----DWRDIVSYVIDHFDIEIMGGLGPSTGKVLRIGLLGCN  364 (388)
T ss_dssp             HHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECCTTC-----CHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGG
T ss_pred             chhHHHHHHHhhcCcccccCCHHHcCCeEEEEECCCCC-----CHHHHHHHHHhcCCEEEeCCchhhcCCEEEEeCCCCC
Confidence            8888888888775322211122  12234455565432     46677777778889999998776567899999 663 


Q ss_pred             -ChHHHHHHHHHHHHHHHHHhhc
Q 042445          224 -EPSALENGLGRMKAFYDRHAEK  245 (246)
Q Consensus       224 -~~~~l~~~~~~l~~~~~~~~~~  245 (246)
                       +.++++++++.|+++++++.++
T Consensus       365 ~t~edid~li~aL~~~L~~l~k~  387 (388)
T d1h0ca_         365 ATRENVDRVTEALRAALQHCPKK  387 (388)
T ss_dssp             CSHHHHHHHHHHHHHHHHHSCCC
T ss_pred             CCHHHHHHHHHHHHHHHHHhccc
Confidence             7889999999999999987754

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

Probab=99.46  E-value=6.6e-12  Score=103.95  Aligned_cols=142  Identities=14%  Similarity=0.103  Sum_probs=99.0

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCC-cccCCCCCccccccCCcccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGH-LAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~-~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      ++-+|.|||..+.+   +++|.++|+++|+++|+|++++. ....    .++ .++.+   |+++|.+|.+++.+--+|-
T Consensus       149 ~~EtpsNP~l~v~D---i~~i~~iA~~~g~~~vvDnT~a~tP~~~----~Pl-~~GaD---iVvhS~TKyl~GHsD~l~G  217 (421)
T d2ctza1         149 WVESIGNPALNIPD---LEALAQAAREKGVALIVDNTFGMGGYLL----RPL-AWGAA---LVTHSLTKWVGGHGAVIAG  217 (421)
T ss_dssp             EEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGGGGGTSC----CGG-GGTCS---EEEEETTTTTTCSSCCCCE
T ss_pred             EEcCCCcceeEecc---hHHHHHHHHhcCCceEecccccccceec----ccc-ccCCc---EEEEechhhccCCCCeEEE
Confidence            88899999999977   99999999999999999999873 2211    122 22222   9999999999987755555


Q ss_pred             EEeeCCCCCcc------------------------hhhHHHHHHH--HhhhcCCCCchHHHHHHHHHhhchHHHHHHHHH
Q 042445           91 LVTSDPNGILQ------------------------DSGIVDSIKI--FLNISSDPATFIQGAVPQILEKTEEEFFSKIID  144 (246)
Q Consensus        91 i~~~~~~~~~~------------------------~~~~~~~l~~--~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~  144 (246)
                      +++.+......                        ...++.+++.  ....+..++|.....+.+-|+.     +.-+.+
T Consensus       218 ~vv~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~sP~~a~l~~rgl~T-----L~lRm~  292 (421)
T d2ctza1         218 AIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMET-----LSLRAE  292 (421)
T ss_dssp             EEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHTT-----HHHHHH
T ss_pred             EEEcCCcchhhhcccccccCCchhhhhhHHHHHhccHHHHHHHHHHHHHhccCCCCHHHHHHHhcCCcc-----hhhHHH
Confidence            55433211100                        0011222221  1235667899999999998886     777788


Q ss_pred             HHHHHHHHHHHHhhcCCCCccccCC
Q 042445          145 ILRETADKCCDRLKEIPCITCPKKP  169 (246)
Q Consensus       145 ~~~~~~~~l~~~L~~~~~~~~~~~~  169 (246)
                      +..++...+.+.|++.|.+..+..|
T Consensus       293 ~~~~nA~~vA~~L~~hp~V~~V~yP  317 (421)
T d2ctza1         293 RHVENTLHLAHWLLEQPQVAWVNYP  317 (421)
T ss_dssp             HHHHHHHHHHHHHHTCTTEEEEECT
T ss_pred             HHHHHHHHHHhhhccCCCeeEEecC
Confidence            8899999999999998877554444

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

Probab=99.46  E-value=1e-11  Score=102.20  Aligned_cols=144  Identities=15%  Similarity=0.162  Sum_probs=104.1

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHH-HcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAK-KLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGS   76 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~-~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s   76 (246)
                      +.+++.++++    ++-.|.||+..+.+   ++++++.++ ++|+++|+|++|+......    ++ .++.+   |+++|
T Consensus       135 ~~~~~~i~~~t~lv~~Etp~NP~l~v~D---i~~~~~~~~~~~g~~vvvDnT~atP~~~~----Pl-~~GaD---iVvhS  203 (394)
T d1e5ea_         135 GEVKKHMKPNTKIVYFETPANPTLKIID---MERVCKDAHSQEGVLVIADNTFCSPMITN----PV-DFGVD---VVVHS  203 (394)
T ss_dssp             THHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHTSTTCEEEEECTTTCTTTCC----GG-GGTCS---EEEEE
T ss_pred             HHHHHhhcccccEEEEeccCCcceeeeh---hhhhhhccccccCeEEEecCcccCcccCC----ch-hcCCC---EEEec
Confidence            4556666665    88889999999877   777777665 4689999999998544321    22 22222   99999


Q ss_pred             cccccccCC-ceEEEEEeeCCCCCcchhhHHHHHHHH--hh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 042445           77 ISKRGIVPG-LRLGWLVTSDPNGILQDSGIVDSIKIF--LN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADK  152 (246)
Q Consensus        77 ~sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~l~~~--~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~  152 (246)
                      .||.+++.+ +-.|.+++++        +.+...+..  +. .+..++|...+.+.+-|+.     +.-+.++..+++..
T Consensus       204 ~TKy~~GhsDv~~G~v~~~~--------~~~~~~~~~~~~~~~G~~lsp~~a~ll~rgl~T-----L~lRm~r~~~nA~~  270 (394)
T d1e5ea_         204 ATKYINGHTDVVAGLICGKA--------DLLQQIRMVGIKDITGSVISPHDAWLITRGLST-----LNIRMKAESENAMK  270 (394)
T ss_dssp             TTTTTTCSSCCCCEEEEECH--------HHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHH
T ss_pred             hhhhcCCCcccccccccchh--------hHHHHHHHHHHHHhhCCCCChHHHHHHHhhchh-----HHHHHHHHHHHHHH
Confidence            999998866 4455566555        666665543  22 3446899999998888885     77788888999999


Q ss_pred             HHHHhhcCCCCccccCC
Q 042445          153 CCDRLKEIPCITCPKKP  169 (246)
Q Consensus       153 l~~~L~~~~~~~~~~~~  169 (246)
                      +.+.|++.|.+..+..|
T Consensus       271 lA~~L~~hp~V~~V~yP  287 (394)
T d1e5ea_         271 VAEYLKSHPAVEKVYYP  287 (394)
T ss_dssp             HHHHHHTCTTEEEEECT
T ss_pred             HHHHHhhcCCccEEeCC
Confidence            99999998877654444

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=99.46  E-value=1.2e-12  Score=110.07  Aligned_cols=206  Identities=13%  Similarity=0.134  Sum_probs=131.7

Q ss_pred             cCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCCCcc
Q 042445           22 SGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQ  101 (246)
Q Consensus        22 ~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~  101 (246)
                      ..+|++.+++|.++|++||+++|.||+++++...|..+ ....++-...   +-+++|.+ ..|+.++.+++.+      
T Consensus       217 ~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRtG~~~-~~~~~gv~PD---i~~~gK~l-~gG~p~~av~~~~------  285 (431)
T d1zoda1         217 IELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMF-ACQRDGVTPD---ILTLSKTL-GAGLPLAAIVTSA------  285 (431)
T ss_dssp             EECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-THHHHTCCCS---EEEECHHH-HTTSSCEEEEECH------
T ss_pred             cCCCHHHHHHHHHHHHhcCceEEecccccccccccccc-ccccCCCCcc---hhcccccc-ccccccceeeeee------
Confidence            35788999999999999999999999999987776544 2222332222   44567995 6678899999887      


Q ss_pred             hhhHHHHHHHH---hhhcCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEE
Q 042445          102 DSGIVDSIKIF---LNISSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMV  177 (246)
Q Consensus       102 ~~~~~~~l~~~---~~~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~  177 (246)
                        ++.+.....   ...+++.+|++.+++.+.+.... +..+++..+.-....+.+.+.+++.+-+.. +... |.++-+
T Consensus       286 --~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~~i~~-vrG~-Glm~~i  361 (431)
T d1zoda1         286 --AIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGD-VRGR-GLLLGV  361 (431)
T ss_dssp             --HHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEE-EEEE-TTEEEE
T ss_pred             --cchhhhhcccccccCCCCCCcchHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhhhhcCCCeEE-Eeec-ceEEEE
Confidence              777766543   22455889999999988887533 234444444444444445555555543331 2222 455545


Q ss_pred             Eeccccc--cCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHH
Q 042445          178 KLNYSLL--EGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       178 ~~~~~~~--~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~  242 (246)
                      ++....-  .........+...+.++|+....-...+..+.||++...  +++++++++++|.+++++.
T Consensus       362 e~~~~~~~~~~~~~~~~~i~~~~~~~Gl~~~~~~~~~~~~~i~l~Ppl~it~~eid~~~~~l~~al~~v  430 (431)
T d1zoda1         362 EIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIERA  430 (431)
T ss_dssp             EEEEETTTTEECTTHHHHHHHHHHHTTEECCEECCTTSCCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEecCCcccCccHHHHHHHHHHHHHhCcccCeeeecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence            5532110  000012344556677889864221111226789999774  9999999999999999874

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=99.44  E-value=3.4e-13  Score=113.18  Aligned_cols=200  Identities=12%  Similarity=0.043  Sum_probs=119.7

Q ss_pred             cCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCCCcc
Q 042445           22 SGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQ  101 (246)
Q Consensus        22 ~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~  101 (246)
                      ..++++.+++|.++|++||+++|.||+++++. .+.. .....++-...   +-+++|.+ ..|+.+|.+++.+      
T Consensus       215 ~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~r-~g~~-~~~~~~gi~PD---i~~~gK~l-ggG~p~~a~~~~~------  282 (427)
T d2gsaa_         215 IVPDAGFLEGLREITLEHDALLVFDEVMTGFR-IAYG-GVQEKFGVTPD---LTTLGKII-GGGLPVGAYGGKR------  282 (427)
T ss_dssp             BCCCTTHHHHHHHHHHHTTCEEEEECTTTBTT-TBTT-CHHHHTTCCCS---EEEECGGG-GTTSCCEEEEECH------
T ss_pred             ccCCHHHHHHHHHHHHHhceeeeeccccccce-eccc-chHHhcCCCHH---HHhhhhcc-CCCcceeeeeehH------
Confidence            45677899999999999999999999999874 3433 23333332223   34456985 4679999999988      


Q ss_pred             hhhHHHHHHHH----hhhcCCCCchHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEE
Q 042445          102 DSGIVDSIKIF----LNISSDPATFIQGAVPQILEKTEE-EFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVM  176 (246)
Q Consensus       102 ~~~~~~~l~~~----~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~  176 (246)
                        ++.+.+...    ...+++.||++.+++.+.|+...+ ...++.++.-...++.+.+..++.+... .+..-++++.+
T Consensus       283 --~i~~~~~~~~~~~~~~T~~gnpla~AAala~Le~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~-~v~~~ggm~~i  359 (427)
T d2gsaa_         283 --EIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAA-CGGQVSGMFGF  359 (427)
T ss_dssp             --HHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCC-EEEEETTEEEE
T ss_pred             --HHHHHhcccCCCcCCCCCCCCchhhHHHHHhhHHhhhhhHHhhhhHHHHHHHHHHHHHHhhcCCCc-EEcccCCeEEE
Confidence              888776542    223558899999999998885432 2233333322223333333333443222 12223444433


Q ss_pred             EEecccccc------CC-CChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHHHHH
Q 042445          177 VKLNYSLLE------GI-NSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDR  241 (246)
Q Consensus       177 ~~~~~~~~~------~~-~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~~~  241 (246)
                      . +......      .. .+....+...+.++||++.|+..   .. +-+++..++++++++++.|++++++
T Consensus       360 ~-~~~~~v~~~~~~~~~d~~~~~~~~~~ll~~Gv~l~p~~~---~~-~~~~l~~Te~dId~~l~al~~al~~  426 (427)
T d2gsaa_         360 F-FTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQF---EA-GFTSLAHTEEDIDATLAAARTVMSA  426 (427)
T ss_dssp             E-SSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTT---SC-EECCTTCCHHHHHHHHHHHHHHHTC
T ss_pred             E-EeccCCCCHHHhhcccHHHHHHHHHHHHHCCEEECCCCC---cc-eeCCCCCCHHHHHHHHHHHHHHHHh
Confidence            2 2111100      00 00112344456689999888542   11 2245556999999999999999865

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.44  E-value=6.3e-13  Score=112.49  Aligned_cols=194  Identities=9%  Similarity=0.019  Sum_probs=119.6

Q ss_pred             cCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCCCcc
Q 042445           22 SGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQ  101 (246)
Q Consensus        22 ~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~  101 (246)
                      ..++++.+++|.++|++||+++|.||++.++...|..+ ....++-. ....+-+++|.++  |   |+.....      
T Consensus       264 ~~~~~~fl~~lr~lc~~~gillI~DEV~tG~gRtG~~~-~~e~~gi~-~~PDiv~~gK~l~--~---g~~~~~~------  330 (461)
T d1ohwa_         264 NHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFW-AHEHWGLD-DPADVMTFSKKMM--T---GGFFHKE------  330 (461)
T ss_dssp             BCCCHHHHHHHHHHHHHTTCEEEEECTTTCSSTTSSSS-GGGGGCCS-SCCSEEEECGGGS--S---EEEEECG------
T ss_pred             cCchhhHHHHHHHHHHhhCcceeccccccccccccccc-cccccccc-cCchhhhhhhccc--c---ccccccc------
Confidence            56788999999999999999999999999998777533 33333221 0111336779853  2   4444433      


Q ss_pred             hhhHHHHHHH-HhhhcCCCCchHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEe
Q 042445          102 DSGIVDSIKI-FLNISSDPATFIQGAVPQILEKTEE-EFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKL  179 (246)
Q Consensus       102 ~~~~~~~l~~-~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~  179 (246)
                        . +..... ....+++.++++.+++.+.|+...+ ..+++.++.-+..++.+.+..++.|.+..-+. .-|+++-+++
T Consensus       331 --~-~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~~l~~~~~~~g~~l~~~l~~l~~~~~~~i~~vr-G~Gl~~~ie~  406 (461)
T d1ohwa_         331 --E-FRPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVR-GRGTFCSFDT  406 (461)
T ss_dssp             --G-GSCSSTTSSCCSCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEE-EETTEEEEEC
T ss_pred             --c-cccccccccccccccccccchhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEee-eeeEEEEEEc
Confidence              1 111111 1233457899999999998885432 22333332222222333333333443211112 2366666777


Q ss_pred             ccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHH
Q 042445          180 NYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       180 ~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~  242 (246)
                      +...      ..+.+...+.++||.+.+..    ++.|||....  +++++++++++|.++++++
T Consensus       407 ~~~~------~~~~i~~~~~~~Gll~~~~~----~~~ir~~PpL~it~~eid~~~~~l~~~l~ef  461 (461)
T d1ohwa_         407 PDES------IRNKLISIARNKGVMLGGCG----DKSIRFRPTLVFRDHHAHLFLNIFSDILADF  461 (461)
T ss_dssp             SSHH------HHHHHHHHHHHTTEECEEET----TTEEECCCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred             CCHH------HHHHHHHHHHHCCeEEeeCC----CCEEEEeCCcCCCHHHHHHHHHHHHHHHhcC
Confidence            6543      34455667778999998743    5789998663  9999999999999999763

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

Probab=99.41  E-value=9.2e-12  Score=100.40  Aligned_cols=144  Identities=13%  Similarity=0.106  Sum_probs=101.4

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHH-HHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETA-KKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGS   76 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~-~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s   76 (246)
                      |.++..++++    +.-+|.||+..+.+   ++++++++ +++|+++|+|+++.......    ++ .++.   -|+++|
T Consensus        74 ~~~~~~i~~~t~~i~~Es~~np~~~v~d---~~~~~~~~a~~~~~~~vVDnT~atp~~~~----pl-~~Ga---DiVv~S  142 (331)
T d1pffa_          74 GNIEKHLKPNTRIVYFETPANPTLKVID---IEDAVKQARKQKDILVIVDNTFASPILTN----PL-DLGV---DIVVHS  142 (331)
T ss_dssp             THHHHTCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHTTSSSCEEEEECTTTHHHHCC----GG-GGTC---SEEEEE
T ss_pred             hhHhhhcccccceeeeeccccccccccc---chhhhhhhhcccCceEEeecccccccccc----cc-ccCC---CEEEec
Confidence            4556666655    77788899998887   66677664 56899999999998544321    21 1222   289999


Q ss_pred             cccccccCC-ceEEEEEeeCCCCCcchhhHHHHHHHH--hh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 042445           77 ISKRGIVPG-LRLGWLVTSDPNGILQDSGIVDSIKIF--LN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADK  152 (246)
Q Consensus        77 ~sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~l~~~--~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~  152 (246)
                      ++|.+++.+ .-.|.+++++        +.....+..  .. .+..++|.....+.+-+++     +..+.++..++...
T Consensus       143 ~TKy~~Gh~d~~~G~v~~~~--------~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~T-----l~~Rm~~~~~nA~~  209 (331)
T d1pffa_         143 ATKYINGHTDVVAGLVCSRA--------DIIAKVKSQGIKDITGAIISPHDAWLITRGTLT-----LDMRVKRAAENAQK  209 (331)
T ss_dssp             TTTTTSSSSSCCCEEEEECH--------HHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
T ss_pred             chhhcCCCCccccccccccc--------cchhhhhhhhhhhccCCCCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence            999998866 4445555554        555554443  22 3446788888888777774     77778888999999


Q ss_pred             HHHHhhcCCCCccccCC
Q 042445          153 CCDRLKEIPCITCPKKP  169 (246)
Q Consensus       153 l~~~L~~~~~~~~~~~~  169 (246)
                      +.+.|+++|.+..+..|
T Consensus       210 lA~~L~~hp~V~~V~yP  226 (331)
T d1pffa_         210 VAEFLHEHKAVKKVYYP  226 (331)
T ss_dssp             HHHHHHHCTTCCCEECT
T ss_pred             HHHhhhhCCcEEeeccc
Confidence            99999998887655554

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=99.37  E-value=3.1e-12  Score=108.01  Aligned_cols=213  Identities=17%  Similarity=0.105  Sum_probs=128.4

Q ss_pred             cccCCcCCC-ccCCChhhHHHHHHHHHHcCCEEEEccccCCcc--c-----CCCCCccccc----cCCcccEEEEccccc
Q 042445           12 FSDFQVFHV-GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLA--F-----GNTPFVSMGV----FGSIVPLLTLGSISK   79 (246)
Q Consensus        12 ~~~~p~NPt-G~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~--~-----~~~~~~~~~~----~~~~~~~i~~~s~sK   79 (246)
                      ++.+|+|+. |++++.+++++|.++|++||+.++.|+++....  +     .+....++..    ...... ++..|++|
T Consensus       179 ~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad-~~s~s~~K  257 (456)
T d1c7ga_         179 CLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYAD-GCTMSGKK  257 (456)
T ss_dssp             EEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCS-EEEEETTT
T ss_pred             EeeecccccccceecHHHHHHHHHHHHHcCCEEEEEcchhhcchhhhcccccccCCCChhhhccccccccc-cEEEeccc
Confidence            677888875 688899999999999999999999999865321  0     1111111111    111112 44558999


Q ss_pred             ccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhh------cCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHH
Q 042445           80 RGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNI------SSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADK  152 (246)
Q Consensus        80 ~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~  152 (246)
                      .+++++  -|++++++.       ++.++++.....      ....+.....+++..+.... .+++    +...++.+.
T Consensus       258 ~~~~~~--GG~i~~~~~-------~l~~~~r~~~~~~~g~~~~g~~~~~~~~a~a~~l~e~~~~~~l----~~r~~~~~~  324 (456)
T d1c7ga_         258 DCLVNI--GGFLCMNDE-------EMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYI----EHRVKQVRY  324 (456)
T ss_dssp             TTCCSS--CEEEEESCH-------HHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTCHHHH----HHHHHHHHH
T ss_pred             cccccc--eeEEEcCCH-------HHHHHHHHhccccCCCcccchhhHHHHHHHHHHHHHhcCHHHH----HHHHHHHHH
Confidence            977664  267776663       666666654211      11223333333333333211 2232    223455677


Q ss_pred             HHHHhhcCCCCccccCCCCceEEEEEecccc--c--cCCCChHHHHHHHHHhcCeEEecCCCc-------------CCCC
Q 042445          153 CCDRLKEIPCITCPKKPEGSMFVMVKLNYSL--L--EGINSDMEFALKLAKEESVIVLPGITV-------------GLKD  215 (246)
Q Consensus       153 l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~--~--~~~~~~~~~~~~ll~~~gi~v~pg~~f-------------~~~~  215 (246)
                      +.+.|++. ++. +..|.+++.++++.....  +  ... .....+..++.+.||...+...+             ...+
T Consensus       325 L~e~L~~~-g~~-vv~p~g~~~v~vda~~~~~~i~~~~~-~~~~~~~~l~~~~GIr~~~~g~~~~~~~~~~g~~~~~~~e  401 (456)
T d1c7ga_         325 LGDKLREA-GVP-IVEPTGGHAVFLDARRFCPHLTQDQF-PAQSLAASIYMETGVRSMERGIVSAGRSKETGENHRPKLE  401 (456)
T ss_dssp             HHHHHHHT-TCC-BCSSCCSSEEEEEHHHHCTTSCGGGC-HHHHHHHHHHHHHSEECEEESHHHHCBCSSSCCBCCCSCC
T ss_pred             HHHHHHhc-cCC-cccCCCCcceeEechhhccCCCcccc-cHHHHHHHHHHHhCeeecccCccccccCCcccCccCCccc
Confidence            88888886 555 467888888887543110  0  001 24566777888899976542221             1135


Q ss_pred             eEEEEeec---ChHHHHHHHHHHHHHHHH
Q 042445          216 WLRITFAV---EPSALENGLGRMKAFYDR  241 (246)
Q Consensus       216 ~iRls~~~---~~~~l~~~~~~l~~~~~~  241 (246)
                      .+||++..   ++++++.+++.|+++.++
T Consensus       402 ~vRLaip~~~~T~e~iD~Vae~i~~v~~~  430 (456)
T d1c7ga_         402 TVRLTIPRRVYTYAHMDVVADGIIKLYQH  430 (456)
T ss_dssp             EEEEECCTTSCCHHHHHHHHHHHHHHHTT
T ss_pred             eEEEecCcccCCHHHHHHHHHHHHHHHhh
Confidence            69999873   889999999999988754

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=99.37  E-value=1e-12  Score=111.48  Aligned_cols=221  Identities=16%  Similarity=0.040  Sum_probs=121.6

Q ss_pred             cccCCcCCC-ccCCChhhHHHHHHHHHHcCCEEEEccccCCcccC-------CCCCccccccCC-cccEEEEcccccccc
Q 042445           12 FSDFQVFHV-GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFG-------NTPFVSMGVFGS-IVPLLTLGSISKRGI   82 (246)
Q Consensus        12 ~~~~p~NPt-G~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~-------~~~~~~~~~~~~-~~~~i~~~s~sK~~~   82 (246)
                      +...+||.. |.++|.+++++|.++|++||++++.|+++......       +....+.....+ -.....+.|+||..+
T Consensus       187 ~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~  266 (465)
T d1ax4a_         187 VSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKD  266 (465)
T ss_dssp             EEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTST
T ss_pred             eeccccccCceecCCHHHHHHHHHHHHHcCCEEEEECcchhhhhcccccccccccccchhhhccccccccceeEeecccC
Confidence            444444444 36689999999999999999999999998643211       000001111100 001112334444444


Q ss_pred             cCCceEEEEEeeCCCCCcchhhHHHHHHHH--hhhcC----CCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 042445           83 VPGLRLGWLVTSDPNGILQDSGIVDSIKIF--LNISS----DPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDR  156 (246)
Q Consensus        83 ~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~--~~~~~----~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  156 (246)
                      +.+.+.|++++++..      .+.......  ...+.    ........++...+....   .+...+...++.+.+.+.
T Consensus       267 ~~~~~~g~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~e~~---~~~~~~~~~~~~~~l~~~  337 (465)
T d1ax4a_         267 PLLNIGGLVAIRDNE------EIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGT---EEEYLHYRIGQVKYLGDR  337 (465)
T ss_dssp             TCCSSCEEEEESSCH------HHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHH
T ss_pred             cccccceeEeecchH------HHHHhhhccccccccCCCcchhhHHHHHHHhhhhHHhh---hHHHHHHHHHHHHHHHHH
Confidence            566667888887731      222222221  11111    222223333333332211   122333445567788888


Q ss_pred             hhcCCCCccccCCCCceEEEEEecccc--ccC-CCChHHHHHHHHHhcCeEEecCCC-------------cCCCCeEEEE
Q 042445          157 LKEIPCITCPKKPEGSMFVMVKLNYSL--LEG-INSDMEFALKLAKEESVIVLPGIT-------------VGLKDWLRIT  220 (246)
Q Consensus       157 L~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~-~~~~~~~~~~ll~~~gi~v~pg~~-------------f~~~~~iRls  220 (246)
                      |++. ++. ...+.+++++.+....-.  ..+ ..........++.+.||...+...             +...+.+||+
T Consensus       338 L~~~-g~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~GI~~~~~~~~~~~~~~~~g~~~~~~~~~vRla  415 (465)
T d1ax4a_         338 LREA-GIP-IQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLT  415 (465)
T ss_dssp             HHHT-TCC-BCSSCCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEE
T ss_pred             HHhh-cCc-cccCCCcceeeeehhhhcCCCccccchhHHHHHHHHHhcCceeccccccccccccccCCccCCCCCceEEe
Confidence            8886 555 456777888776543211  000 002455677788899987654221             1115689999


Q ss_pred             ee---cChHHHHHHHHHHHHHHHHHh
Q 042445          221 FA---VEPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       221 ~~---~~~~~l~~~~~~l~~~~~~~~  243 (246)
                      +.   .++++++.+++.|.+++++..
T Consensus       416 lP~~~~T~eeiD~vv~~l~~v~~~~~  441 (465)
T d1ax4a_         416 IARRVYTNDHMDYIADALIGLKEKFA  441 (465)
T ss_dssp             CCTTSSCHHHHHHHHHHHHTTHHHHT
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            75   289999999999999887543

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.35  E-value=7.2e-12  Score=103.12  Aligned_cols=218  Identities=11%  Similarity=-0.008  Sum_probs=120.3

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI   77 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~   77 (246)
                      +.+++.++++    ++++++|+||...+.+++.++++. ...++++++|.++......    ..+   ...+.-+++.|.
T Consensus       130 ~~l~~~i~~~t~lv~is~v~~~tG~~~~~~~i~~~~~~-~~~~~~~~vD~~q~~g~~~----~d~---~~~~~D~~~~s~  201 (376)
T d1eg5a_         130 EELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKK-KNKETLVHVDAVQTIGKIP----FSL---EKLEVDYASFSA  201 (376)
T ss_dssp             HHHHHHCCTTEEEEEEESBCTTTCBBCCHHHHHHHHHH-HCTTCEEEEECTTTTTTSC----CCC---TTTCCSEEEEEG
T ss_pred             HHHHHhcCCCceEEEEECCccccceeeeehhhhhhhhh-cccCceeEEEeeecccccc----ccc---cccCccceeccc
Confidence            4455666665    889999999999995554444322 3348999999988753322    111   122234899999


Q ss_pred             ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcC-CCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 042445           78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISS-DPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDR  156 (246)
Q Consensus        78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  156 (246)
                      .|.+|.+|..+.|+--..  ..-   .....-........ ..+......+...... ................+.+.+.
T Consensus       202 ~K~~gp~G~~~l~~~~~~--~~~---p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  275 (376)
T d1eg5a_         202 HKFHGPKGVGITYIRKGV--PIR---PLIHGGGQERGLRSGTQNVPGIVGAARAMEI-AVEELSEAAKHMEKLRSKLVSG  275 (376)
T ss_dssp             GGGTSCTTCEEEEECTTS--CCC---CSBCSSCTTTTTBCSCCCHHHHHHHHHHHHH-HHHTHHHHHHHHHHHHHHHHHH
T ss_pred             ceeecCCCceeEEeccCc--ccC---CcccCCCCcccccCCcccchhhhhHHHHhhc-cccchhhhhhhhhhhhhhhccc
Confidence            999988987776653221  000   00000000011111 2233444443333332 2223344444455566667777


Q ss_pred             hhcCCCCccc-cCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC-------------------CCe
Q 042445          157 LKEIPCITCP-KKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-------------------KDW  216 (246)
Q Consensus       157 L~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-------------------~~~  216 (246)
                      |+........ ............++..       ..+.+...|.++||.+++|..|..                   .+.
T Consensus       276 l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~L~~~gI~vr~G~~c~~~~~~~~~~l~~~gi~~~~~~~~  348 (376)
T d1eg5a_         276 LMNLGAHIITPLEISLPNTLSVSFPNI-------RGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGA  348 (376)
T ss_dssp             HHTTTCEECSCTTSBCTTEEEEECTTC-------CHHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHE
T ss_pred             cccccccccccccccccceeeeccCCC-------CHHHHHHHHhhCCeEEeCcchhcCCccchhHHHHHcCCCcccCCCE
Confidence            7664332211 1111122222334332       345556678899999998876532                   246


Q ss_pred             EEEEeec--ChHHHHHHHHHHHHHHH
Q 042445          217 LRITFAV--EPSALENGLGRMKAFYD  240 (246)
Q Consensus       217 iRls~~~--~~~~l~~~~~~l~~~~~  240 (246)
                      ||+|++.  ++++++.+++.|++.+.
T Consensus       349 iRiS~~~ynt~edid~l~~~L~~iv~  374 (376)
T d1eg5a_         349 IRISLCKYNTEEEVDYFLKKIEEILS  374 (376)
T ss_dssp             EEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             EEEecCCCCCHHHHHHHHHHHHHHHh
Confidence            9999995  89999999999999875

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=99.35  E-value=2.3e-12  Score=102.81  Aligned_cols=202  Identities=10%  Similarity=-0.006  Sum_probs=113.0

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      +...+ |++|.+.+.+++..+.+.|.+++.+++.|++|......................+...+.+|.  ..+...++.
T Consensus       136 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  212 (340)
T d1svva_         136 YISNT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKA--GGMFGEALI  212 (340)
T ss_dssp             EEESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTT--TCSSCEEEE
T ss_pred             eeccc-ccccccccHHHhhhhhcccccccceeeeeccceeeeecccccccccccccccceeeecCCccc--ccccccccc
Confidence            44444 677788888999999999999999999999998554433221111111111123334444444  333445555


Q ss_pred             EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445           92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG  171 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~  171 (246)
                      ....        .................+....+.++++............+...+++..+.+.|++. |+. ...|.+
T Consensus       213 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~-~~~p~~  282 (340)
T d1svva_         213 ILND--------ALKPNARHLIKQRGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEAC-GIR-LAWPSA  282 (340)
T ss_dssp             ECSG--------GGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHT-TCC-BSSCCS
T ss_pred             ccch--------hhhhhhhhhcccccCccchhhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHhcC-CCe-eecCCC
Confidence            5544        333333332221212222222222222221122334444556677888888888886 666 456777


Q ss_pred             ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHH
Q 042445          172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKA  237 (246)
Q Consensus       172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~  237 (246)
                      ++++++.++.          +...+++++..+...+.. -..++.+|||++.  ++++++++++.|++
T Consensus       283 ~~~v~~~~~~----------~~~~~l~~~~~~~~~~~~-~~~~~~vR~s~~~~~t~edid~~l~~l~~  339 (340)
T d1svva_         283 SNQLFPILEN----------TMIAELNNDFDMYTVEPL-KDGTCIMRLCTSWATEEKECHRFVEVLKR  339 (340)
T ss_dssp             SSEECBEEEH----------HHHHHHTTTEECEEEEEE-TTTEEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred             ceEEEEeCCH----------HHHHHHHHhhhhhccccc-CCCCcEEEEECCCCCCHHHHHHHHHHHhc
Confidence            8888877753          233334433222222211 1227889999874  89999999888875

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=1.5e-11  Score=103.53  Aligned_cols=217  Identities=12%  Similarity=0.027  Sum_probs=122.1

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCcc-ccccCCcccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVS-MGVFGSIVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~-~~~~~~~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      +.+.|+|++|.+-+   +++|.++|++||+++++|++|+.+......... ...+..  --++..|.+|.+++|. ..|+
T Consensus       199 ~~~~~~~~~G~~~~---~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~--vd~~~~s~hK~~~~p~-g~~~  272 (445)
T d3bc8a1         199 HSTTACFAPRVPDR---LEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGR--IDAFVQSLDKNFMVPV-GGAI  272 (445)
T ss_dssp             EEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHHHSC--CCEEEEEHHHHHSCCS-SCEE
T ss_pred             EEeCCCCCCeeehh---HHHHHHHHHHhCCcEEEEccchhhhhhccccchhccCcCC--cceEEecCccccccCC-CCce
Confidence            78889999999865   999999999999999999999865422101100 011111  1266778899866543 3566


Q ss_pred             EEeeCCCCCcchhhHHHHHHHHhhhcCCC-CchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcC---CCCccc
Q 042445           91 LVTSDPNGILQDSGIVDSIKIFLNISSDP-ATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEI---PCITCP  166 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~~~~  166 (246)
                      ++..+.       ...+.+......+... ....+.+....+   ...-..+..+...++.+.+.+.|+++   .+....
T Consensus       273 l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~l  342 (445)
T d3bc8a1         273 IAGFNE-------PFIQDISKMYPGRASASPSLDVLITLLSL---GCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLL  342 (445)
T ss_dssp             EEESCH-------HHHHHHHHHSCSCBCSHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBC
T ss_pred             eeeCCh-------HHHHHHHHHHhhcccCcchHHHHHHHHHH---hhhcchhhHHHHHHHHHHHHHHHHHHHhhcCceee
Confidence            666652       5566555443222111 112222222222   22233344444444555555555432   133323


Q ss_pred             cCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEec----CC-------C---cCC------CCeEEEEeec--C
Q 042445          167 KKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLP----GI-------T---VGL------KDWLRITFAV--E  224 (246)
Q Consensus       167 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p----g~-------~---f~~------~~~iRls~~~--~  224 (246)
                      ..+......++.+........ .+...+...|.+.||....    +.       .   |+.      ..++|++++.  +
T Consensus       343 ~~~~~~~~~~~~l~~~~~~~~-~~~~~l~~~L~~~gI~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~i~i~~~~~~T  421 (445)
T d3bc8a1         343 QTPHNPISLAMTLKTIDGHHD-KAVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMK  421 (445)
T ss_dssp             CCTTCSSEEEEECTTTSSSSS-CHHHHHHHHHHHTTCCSCEEECSCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTCC
T ss_pred             cCCCCCcceEEEeeeccccCC-CCHHHHHHHHHHcCCCcceeeccccccchhhhhhhhcCCCCccCCCCeEEEeCcCCCC
Confidence            345556666665543221111 2444445567777763221    11       0   111      3669998884  8


Q ss_pred             hHHHHHHHHHHHHHHHHHhhc
Q 042445          225 PSALENGLGRMKAFYDRHAEK  245 (246)
Q Consensus       225 ~~~l~~~~~~l~~~~~~~~~~  245 (246)
                      +++++..++.|.+++++++++
T Consensus       422 ~eDID~~v~~L~kilk~~rk~  442 (445)
T d3bc8a1         422 MQDVDLFIKRLDKCLNIVRKE  442 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhh
Confidence            899999999999999998765

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.32  E-value=9.2e-12  Score=104.51  Aligned_cols=201  Identities=11%  Similarity=0.060  Sum_probs=114.6

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCccc-CCCCCccccccCCcccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAF-GNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~-~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      +.++|++++|.+-+   +++|.++|++||+++++|++|+.+.. .+.........   .--+++.|++|.++.+. ..|+
T Consensus       216 ~~~~~~~~~g~~~~---l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~~~~~~~~~---~~D~~~~s~hK~l~~~~-g~~~  288 (434)
T d2z67a1         216 LSTLTFFPPRNSDD---IVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKY---RVDAVVSSSDKNLLTPI-GGGL  288 (434)
T ss_dssp             EEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTS---CCSEEEEEHHHHHCCCS-SCEE
T ss_pred             EeccCcCCCccccC---HHHHHHHHHHhCCeEEEeccchhhhhhccccccccccC---CcceEEEcCccccccCC-Cccc
Confidence            77788888998755   88999999999999999999975431 11011111111   12367889999866542 3455


Q ss_pred             EEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcC---CCCcccc
Q 042445           91 LVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEI---PCITCPK  167 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~~~~~  167 (246)
                      +...+.       ..++++......+.  +......+...+.........+..+...++++++.+.|+++   .+... .
T Consensus       289 ~~~~~~-------~~~~~~~~~~~~~~--~~~~~~~~~a~l~~~~~~g~~~~~~~~~~~a~~l~~~L~~l~~~~g~~l-l  358 (434)
T d2z67a1         289 VYSTDA-------EFIKEISLSYPGRA--SATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKF-L  358 (434)
T ss_dssp             EEESCH-------HHHHHHHTTSCSCB--CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCB-C
T ss_pred             cccCcH-------HHHHHHHhhccccc--ccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhhhhcCcee-c
Confidence            665552       66666655433221  22222222222222223445555556666667776666553   24442 2


Q ss_pred             CCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEec----C-------CCcCCCCeEEEEeec--ChHHHHHHHHH
Q 042445          168 KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLP----G-------ITVGLKDWLRITFAV--EPSALENGLGR  234 (246)
Q Consensus       168 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p----g-------~~f~~~~~iRls~~~--~~~~l~~~~~~  234 (246)
                      .+.....+.+.+..        +...+...|.+.||....    .       ..+...+++|++++.  +.++++..++.
T Consensus       359 ~~~~~~~~~~~~~~--------~~~~l~~~L~~~gI~g~~v~~~l~~~g~~~~~~~~~~~l~~~~s~~~T~edID~~i~~  430 (434)
T d2z67a1         359 DVESPIASCISVNS--------DPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSK  430 (434)
T ss_dssp             CCCCSSEEEEECSS--------CHHHHHHHHHHTTEESCEEECTTCHHHHTCSSCCSCCEEEEECCTTCCHHHHHHHHHH
T ss_pred             CCCCCceeeeecCC--------CHHHHHHHHHHcCCeeeehhhhccccCeeeecccCCCeEEEecCCCCCHHHHHHHHHH
Confidence            33333333333332        333445567788885321    1       111226889999884  88999988888


Q ss_pred             HHH
Q 042445          235 MKA  237 (246)
Q Consensus       235 l~~  237 (246)
                      |++
T Consensus       431 L~k  433 (434)
T d2z67a1         431 LEK  433 (434)
T ss_dssp             HHT
T ss_pred             Hhc
Confidence            865

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=99.30  E-value=9.5e-11  Score=97.06  Aligned_cols=208  Identities=12%  Similarity=0.017  Sum_probs=122.9

Q ss_pred             hhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccc
Q 042445            3 LINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSIS   78 (246)
Q Consensus         3 ~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~s   78 (246)
                      .+++.+.++    +++..+|.||..++   +++|.++|+++|+.+++|-++......    ..+...   +..++..|..
T Consensus       156 ~~~~~i~~~T~lV~i~~v~~~tG~~~p---v~~i~~~~~~~~~~~~vD~~q~~g~~~----~~~~~~---~~d~~~~s~~  225 (404)
T d1qz9a_         156 ELPQAIDQDTAVVMLTHVNYKTGYMHD---MQALTALSHECGALAIWDLAHSAGAVP----VDLHQA---GADYAIGCTY  225 (404)
T ss_dssp             GHHHHCSTTEEEEEEESBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTTTTSC----CCHHHH---TCSEEEECSS
T ss_pred             hHHHhcCCCceEEEEecccccccceec---HHHHhccccccccceeEEeeccccccc----cccccc---cceEEEEech
Confidence            445556655    77888999999998   889999999999999999998864422    122222   2336777788


Q ss_pred             cccccCCceEEEEEeeCCCCCcchhhHHHHHHHH-----------------------hhh-cCCCCchHHHHHHHHHh--
Q 042445           79 KRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIF-----------------------LNI-SSDPATFIQGAVPQILE--  132 (246)
Q Consensus        79 K~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~-----------------------~~~-~~~~~~~~q~~~~~~l~--  132 (246)
                      |.++++.--.|++..++        ...+.+...                       ... ....+..........+.  
T Consensus       226 K~~~~~~g~~g~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (404)
T d1qz9a_         226 KYLNGGPGSQAFVWVSP--------QLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVF  297 (404)
T ss_dssp             STTCCCTTCCCEEEECT--------TTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHH
T ss_pred             hhcccCCceEEEEEech--------hhhhhCCccccccCCccccccccccccccccchhhhhhhccchhHHHHHHHHHHH
Confidence            87654443456776665        332222110                       001 11233333333333333  


Q ss_pred             -hchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC---ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecC
Q 042445          133 -KTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG---SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPG  208 (246)
Q Consensus       133 -~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg  208 (246)
                       ......+++....+......+...+...+++..+.+...   +-.+.+.++         +...+.+.|.++||.+.. 
T Consensus       298 ~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~i~~p~~~~~r~~~vsf~~~---------~~~~v~~~L~~~gi~~~~-  367 (404)
T d1qz9a_         298 AQTDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHP---------EGYAVIQALIDRGVIGDY-  367 (404)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECT---------THHHHHHHHHTTTEECEE-
T ss_pred             HHhhHHHHHHHHHHhHHHHHHHHHhhccCCCEEEECCCCccceeeEEEEecC---------CHHHHHHHHHHCCCEEee-
Confidence             222344444444444555555555555567763322221   233444443         233455667899996532 


Q ss_pred             CCcCCCCeEEEEee--c-ChHHHHHHHHHHHHHHHH
Q 042445          209 ITVGLKDWLRITFA--V-EPSALENGLGRMKAFYDR  241 (246)
Q Consensus       209 ~~f~~~~~iRls~~--~-~~~~l~~~~~~l~~~~~~  241 (246)
                         ..++.||+|++  + ++++++++++.|++++++
T Consensus       368 ---r~~~~lRiS~~h~ynt~~did~~~~~L~~vl~~  400 (404)
T d1qz9a_         368 ---REPRIMRFGFTPLYTTFTEVWDAVQILGEILDR  400 (404)
T ss_dssp             ---ETTTEEEEECCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ---cCCCeEEEECCCCCCCHHHHHHHHHHHHHHHHh
Confidence               12578999996  3 789999999999999875

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=99.29  E-value=9.4e-11  Score=96.11  Aligned_cols=204  Identities=11%  Similarity=0.084  Sum_probs=126.6

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      .+++-+|.||+..+   ++++.++|+++|.++++|.+++.....    ..   ++..+..+++.|..|.+++|+ .+|++
T Consensus       148 ~~~~~~~~tg~~~~---i~~i~~~~~~~g~~~~vDa~~~~g~~~----~~---~~~~~~d~~~~s~~K~~~gp~-g~~~~  216 (377)
T d1vjoa_         148 ALVHAETSTGARQP---LEGVGELCREFGTLLLVDTVTSLGGVP----IF---LDAWGVDLAYSCSQKGLGCSP-GASPF  216 (377)
T ss_dssp             EEESEETTTTEECC---CTTHHHHHHHHTCEEEEECTTTTTTSC----CC---TTTTTCSEEECCSSSTTCSCS-SCEEE
T ss_pred             eeeeeeccceeeec---hhhhhhhhhhccceEEEecchhhhhhh----hc---ccccccceeeecccccccCCC-EEEEe
Confidence            45555689999888   778888889999999999998743321    11   222233477888888765543 35666


Q ss_pred             EeeCCCCCcchhhHHHHHHHHh------------------h--hcCCCCch-HHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 042445           92 VTSDPNGILQDSGIVDSIKIFL------------------N--ISSDPATF-IQGAVPQILEKTEEEFFSKIIDILRETA  150 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~------------------~--~~~~~~~~-~q~~~~~~l~~~~~~~~~~~~~~~~~~~  150 (246)
                      +..+        ..++......                  .  .+.....+ ...++..+.........+...+..+++.
T Consensus       217 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~  288 (377)
T d1vjoa_         217 TMSS--------RAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNV  288 (377)
T ss_dssp             EECH--------HHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             cchh--------hHHhhhhccCCCCcceeeccchhhhccCcccccccccceechhhhHHHHhhhhhcCchHHHHHHHHHh
Confidence            6655        5555433210                  0  11122222 2222223332212344667777778888


Q ss_pred             HHHHHHhhcCCCCccccCCC--CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEE-eec--Ch
Q 042445          151 DKCCDRLKEIPCITCPKKPE--GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRIT-FAV--EP  225 (246)
Q Consensus       151 ~~l~~~L~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls-~~~--~~  225 (246)
                      +.+.+.+... ++..+..+.  ....+.+.+++..     +..+++..++.++||.+..|.....++.+|+| ++.  ++
T Consensus       289 ~~l~~~l~~~-~~~~~~~~~~rs~~v~~~~~p~~~-----~~~~l~~~L~~~~gI~v~~G~~~~~~~~~Ris~~g~~~t~  362 (377)
T d1vjoa_         289 EYLWERLEDI-GLSLHVEKEYRLPTLTTVCIPDGV-----DGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRK  362 (377)
T ss_dssp             HHHHHHHHHT-TCCBSSCGGGBCSSEEEEECCTTC-----CHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSH
T ss_pred             hhhhhhhhcc-CceeecChHhcCCeEEEEECCCCC-----CHHHHHHHHHhcCCEEEecCcccccCCEEEEecCcCCCCH
Confidence            8888888775 333222332  2333444455432     46677777778889999988876557899999 563  68


Q ss_pred             HHHHHHHHHHHHHHH
Q 042445          226 SALENGLGRMKAFYD  240 (246)
Q Consensus       226 ~~l~~~~~~l~~~~~  240 (246)
                      +++++.++.|+++++
T Consensus       363 edi~~lv~al~~~l~  377 (377)
T d1vjoa_         363 ESVDQLIPALEQVLR  377 (377)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhC
Confidence            889999999988763

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.23  E-value=3e-10  Score=92.50  Aligned_cols=202  Identities=11%  Similarity=0.065  Sum_probs=125.3

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccccccccc-CCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIV-PGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-~g~r~G~   90 (246)
                      .++.-+|-||...+   +++|.++|+++|+++++|-+++.....    ..   ++..+..+++.|..|.+++ +|  +|+
T Consensus       132 ~~~~~~~~tG~~~~---i~~i~~~~~~~g~~~~vDa~qs~G~~~----~d---~~~~~~D~~~~s~~K~l~gp~G--~g~  199 (361)
T d1m32a_         132 AMVHSETTTGMLNP---IDEVGALAHRYGKTYIVDAMSSFGGIP----MD---IAALHIDYLISSANKCIQGVPG--FAF  199 (361)
T ss_dssp             EEESEETTTTEECC---HHHHHHHHHHHTCEEEEECTTTTTTSC----CC---TTTTTCSEEEEESSSTTCCCSS--EEE
T ss_pred             EEEeeecccccchh---hhhhhhhhcccceeeEeecccccCccc----cc---ccccccceEEeeecccccCCCC--ceE
Confidence            55666788999887   888899999999999999999864422    11   2222344888889998755 46  788


Q ss_pred             EEeeCCCCCcchhhHHHHHH------------------HHh-hhcCCCCchHHHHHHHHHhhchH-HHHHHHHHHHHHHH
Q 042445           91 LVTSDPNGILQDSGIVDSIK------------------IFL-NISSDPATFIQGAVPQILEKTEE-EFFSKIIDILRETA  150 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l~------------------~~~-~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~  150 (246)
                      ++..+        +..+...                  ... ....+++.....++...+....+ ........+..+..
T Consensus       200 l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  271 (361)
T d1m32a_         200 VIARE--------QKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQ  271 (361)
T ss_dssp             EEEEH--------HHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred             EEech--------hhhhhhccccccccccchhhhccccccccccCCCCCchhhhHHHHHHHHHHHhcchhhhHHHHHHHH
Confidence            87775        3221111                  111 12224555566665555553222 23445555666677


Q ss_pred             HHHHHHhhcCCCCccccCCC--CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee-c-ChH
Q 042445          151 DKCCDRLKEIPCITCPKKPE--GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA-V-EPS  226 (246)
Q Consensus       151 ~~l~~~L~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~-~-~~~  226 (246)
                      +.+.+.++..+ ......++  +...+.+.++...  +  .+...+...|.++||.+.+|... .++.+|+|.. . +++
T Consensus       272 ~~l~~~~~~~g-~~~~~~~~~rs~~v~~~~~p~~~--~--~~~~~~~~~l~~~gi~i~~G~~~-~~~~~Ris~~g~~~~~  345 (361)
T d1m32a_         272 RSLVAGMRALG-FNTLLDDELHSPIITAFYSPEDP--Q--YRFSEFYRRLKEQGFVIYPGKVS-QSDCFRIGNIGEVYAA  345 (361)
T ss_dssp             HHHHHHHHHTT-CCBSSCGGGBCSSEEEEECCCCT--T--CCHHHHHHHHHHTTEECEECCCS-SSCEEEEECCSSCCHH
T ss_pred             HHHHHHHhhcC-CcccCChhhcCCcEEEEECCCCC--C--CCHHHHHHHHHHCCcEEECCCcC-CCCEEEEeCCCCCCHH
Confidence            77777777663 33222221  2233344454321  1  13444566788999999887533 3688999953 3 888


Q ss_pred             HHHHHHHHHHHHH
Q 042445          227 ALENGLGRMKAFY  239 (246)
Q Consensus       227 ~l~~~~~~l~~~~  239 (246)
                      +++++++.|++++
T Consensus       346 di~~lv~al~~~L  358 (361)
T d1m32a_         346 DITALLTAIRTAM  358 (361)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHc
Confidence            8999999998875

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.21  E-value=2.6e-10  Score=93.81  Aligned_cols=200  Identities=16%  Similarity=0.083  Sum_probs=119.7

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHc--CCEEEEccccCCcccCCCCCccccccCCcccEEEEccccccc-ccCCceE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKL--GIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRG-IVPGLRL   88 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~--~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~g~r~   88 (246)
                      ++++-+|.||+..+   ++.+.+.|+++  ++++++|.+.+....+    ..+..+   +--+++.|-.|.+ |.+|  +
T Consensus       140 ~~~~~~~~tg~~~~---~~~~~~~~~~~~~~~~~~vDa~qs~g~~p----id~~~~---giD~~~~s~~K~l~gP~G--~  207 (382)
T d2bkwa1         140 TVTHVDTSTAVLSD---LKAISQAIKQTSPETFFVVDAVCSIGCEE----FEFDEW---GVDFALTASQKAIGAPAG--L  207 (382)
T ss_dssp             EEESEETTTTEECC---HHHHHHHHHHHCTTSEEEEECTTTTTTSC----CCTTTT---TCSEEEEESSSTTCCCSC--E
T ss_pred             eeeecccccccccc---chhhhhhccccccceeeeeeccccccccc----cccccc---CeeEEeecccccCcCCCc--h
Confidence            66666799999988   55555555555  6999999988854321    122222   2237888899988 5577  7


Q ss_pred             EEEEeeCCCCCcchhhHHHHHHHHh---------------------------hhcCCCCchHHHHHHHHHhhchHHHHHH
Q 042445           89 GWLVTSDPNGILQDSGIVDSIKIFL---------------------------NISSDPATFIQGAVPQILEKTEEEFFSK  141 (246)
Q Consensus        89 G~i~~~~~~~~~~~~~~~~~l~~~~---------------------------~~~~~~~~~~q~~~~~~l~~~~~~~~~~  141 (246)
                      |+++.++        +.++.+....                           ....+++....+++..+|+...+.-.+.
T Consensus       208 g~l~vs~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~~~~~g~~~  279 (382)
T d2bkwa1         208 SISLCSS--------RFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHK  279 (382)
T ss_dssp             EEEEECH--------HHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHH
T ss_pred             hhhhccH--------HHHhhhhhcccCCCcccchhhhhhhhhhhhcccccccccccCCcHHHHHHHHHHHHHHHHhhhhh
Confidence            8998887        6655442210                           0112445555666666776433445666


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCcccc-CCC-C-c-eEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC-CCe
Q 042445          142 IIDILRETADKCCDRLKEIPCITCPK-KPE-G-S-MFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-KDW  216 (246)
Q Consensus       142 ~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~-~-g-~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~  216 (246)
                      ..++.++.++.+.+.+....++..+. .+. . . ....+.++.        ..+ +..+|+++||.+..|..... .+.
T Consensus       280 ~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~s~~v~~~~~~~--------~~~-~~~~L~~~gi~i~~G~~~~~~~~~  350 (382)
T d2bkwa1         280 RWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYVAD--------PPD-VIAFLKSHGVVIAGGIHKDIGPKY  350 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEECSC--------HHH-HHHHHHHTTEECBCCCCTTTGGGE
T ss_pred             hHHHHHHHHHHHHHHhhhcccccccccCchhccCCcEEEEcCCC--------HHH-HHHHHHHCCeEEECCCChhhcCCE
Confidence            66667777888888877643332111 111 1 1 122333432        333 56678899999998865433 678


Q ss_pred             EEEE-eec--ChHHHHHHHHHHHHHHH
Q 042445          217 LRIT-FAV--EPSALENGLGRMKAFYD  240 (246)
Q Consensus       217 iRls-~~~--~~~~l~~~~~~l~~~~~  240 (246)
                      +|++ ++.  ++++++.+++.|....+
T Consensus       351 ~Ri~~~G~~~~~e~i~~l~~~l~~i~~  377 (382)
T d2bkwa1         351 IRIGHMGVTACNKNLPYMKNCFDLIKL  377 (382)
T ss_dssp             EEECCCGGGTSSTTCTHHHHHHHHHHH
T ss_pred             EEEeCCcCCCCHHHHHHHHHHHHHHHH
Confidence            9999 664  45555555555544433

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.18  E-value=2e-09  Score=87.90  Aligned_cols=196  Identities=12%  Similarity=0.051  Sum_probs=131.1

Q ss_pred             hHHHHHHHHHHcCCEEEEccccC-CcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCCCcchhhHH
Q 042445           28 FVSPIAETAKKLGIMVIANEVYG-HLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQDSGIV  106 (246)
Q Consensus        28 ~~~~l~~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~  106 (246)
                      +++++.++|.+.|++++.|.+|. ++..++....|+...     -++.+|+.|.|.+|  |-|.+.+.+.     +.++.
T Consensus       181 d~~~~reiad~vga~l~~D~aH~~GLIa~g~~~sP~~~a-----Dvvt~tThKtlrGP--rggiI~~~~~-----~~~~~  248 (416)
T d1dfoa_         181 DWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHA-----HVVTTTTHKTLAGP--RGGLILAKGG-----SEELY  248 (416)
T ss_dssp             CHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCCTTTS-----SEEEEESSSTTCCC--SCEEEEESSC-----CHHHH
T ss_pred             CHHHHHHHHHhcCceEEcchhhhhcceeccccCCccccc-----ceeeeehhhcccCC--CceEEEeccc-----hHhHH
Confidence            48889999999999999999988 444444333333321     18888999996554  5677777531     01666


Q ss_pred             HHHHHHhhhcC--CCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEeccccc
Q 042445          107 DSIKIFLNISS--DPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLL  184 (246)
Q Consensus       107 ~~l~~~~~~~~--~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~  184 (246)
                      +++.....++.  ++..-..++.+.++.+......+...++..++++.|.+.|.+. |+..+........+++++....+
T Consensus       249 ~~i~~avfPg~qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~~~-G~~iv~ggTdnHlvlvdl~~~~~  327 (416)
T d1dfoa_         249 KKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLER-GYKVVSGGTDNHLFLVDLVDKNL  327 (416)
T ss_dssp             HHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGGTC
T ss_pred             HHHHhhhCcccccCccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhC-CcccccCCCCCceeEEEecccCC
Confidence            77776644333  2222333333444443333455677788889999999999987 67644344456788888865432


Q ss_pred             cCCCChHHHHHHHHHhcCeEEe----cCCC--cCCCCeEEEEee------cChHHHHHHHHHHHHHHHH
Q 042445          185 EGINSDMEFALKLAKEESVIVL----PGIT--VGLKDWLRITFA------VEPSALENGLGRMKAFYDR  241 (246)
Q Consensus       185 ~~~~~~~~~~~~ll~~~gi~v~----pg~~--f~~~~~iRls~~------~~~~~l~~~~~~l~~~~~~  241 (246)
                           +-..+...|.+.||.+.    |+..  ...++.||++..      ..++++++..+.|.++++.
T Consensus       328 -----~G~~a~~~Le~~gI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~d~~~iA~~I~~~l~~  391 (416)
T d1dfoa_         328 -----TGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVLDS  391 (416)
T ss_dssp             -----CHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred             -----CHHHHHHHHHHcCeEEeCCcCCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence                 56777889999999875    3221  111689999865      2788999999999888764

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=99.17  E-value=9.6e-10  Score=90.40  Aligned_cols=208  Identities=13%  Similarity=0.007  Sum_probs=121.8

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      .+++-+|.||...+   ++++.++|+++|+++++|.+.+.+...      + .++..+-.+++.|--|.+++|+ -+|++
T Consensus       147 ~~~~~~t~tG~~~~---~~~i~~~~~~~~~~~~vD~~ss~g~~p------i-d~~~~~~d~~~~s~~K~~~gp~-G~g~~  215 (388)
T d2ch1a1         147 FLTHGDSSSGLLQP---LEGVGQICHQHDCLLIVDAVASLCGVP------F-YMDKWEIDAVYTGAQKVLGAPP-GITPI  215 (388)
T ss_dssp             EEESEETTTTEECC---CTTHHHHHHHTTCEEEEECTTTBTTBC------C-CTTTTTCCEEECCCC-CCCCCS-SCEEE
T ss_pred             eeeecccccccccc---hhhhcchhccccceeeeeeeecccccc------c-chhccCceEEEEccccccCCCC-eEEEE
Confidence            55566789999988   566777789999999999988854321      1 1222334477788888765433 25666


Q ss_pred             EeeCCCCCcchhhHHHHHHHHh------------------------hhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHH
Q 042445           92 VTSDPNGILQDSGIVDSIKIFL------------------------NISSDPATFIQGAVPQILEKTEEEFFSKIIDILR  147 (246)
Q Consensus        92 ~~~~~~~~~~~~~~~~~l~~~~------------------------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~  147 (246)
                      +..+        ..++.+....                        .....++.....++...+...............+
T Consensus       216 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~~~~~~~~~~~~~  287 (388)
T d2ch1a1         216 SISP--------KALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRI  287 (388)
T ss_dssp             EECH--------HHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             eccH--------HHHHhhhcccCccccccccchhhhhhhcccccccccCccchHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            6665        5555443210                        0111233333334444443222222333333334


Q ss_pred             HHHHHHHHHhhcCCCCccccCC--CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEE-eec-
Q 042445          148 ETADKCCDRLKEIPCITCPKKP--EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRIT-FAV-  223 (246)
Q Consensus       148 ~~~~~l~~~L~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls-~~~-  223 (246)
                      +........+...........+  .....+.+.++.+.     +..++...+++++||.+.+|.++..++.+|+| ++. 
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~~~~p~g~-----~~~~l~~~l~~~~gI~v~~G~~~~~~~~~RIs~~g~~  362 (388)
T d2ch1a1         288 ECAQILYEGLGKMGLDIFVKDPRHRLPTVTGIMIPKGV-----DWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGEC  362 (388)
T ss_dssp             HHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECCTTC-----CHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGG
T ss_pred             HHHHHHHhhhhhcccccccCCHHHhCCeEEEEECCCCC-----CHHHHHHHHhhcCCEEEeCCCccccCCEEEEcCCcCC
Confidence            4444444444443211111122  22334555665432     45677677777889999998876557889999 664 


Q ss_pred             -ChHHHHHHHHHHHHHHHHHh
Q 042445          224 -EPSALENGLGRMKAFYDRHA  243 (246)
Q Consensus       224 -~~~~l~~~~~~l~~~~~~~~  243 (246)
                       +.|+++.+++.|+++++...
T Consensus       363 ~t~edI~~ll~alke~L~~~~  383 (388)
T d2ch1a1         363 STVQKIQFYLYGFKESLKATH  383 (388)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHHHhhC
Confidence             68899999999999998754

>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.15  E-value=3.5e-09  Score=86.07  Aligned_cols=193  Identities=12%  Similarity=0.051  Sum_probs=131.4

Q ss_pred             hHHHHHHHHHHcCCEEEEccccC-CcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCCCcchhhHH
Q 042445           28 FVSPIAETAKKLGIMVIANEVYG-HLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQDSGIV  106 (246)
Q Consensus        28 ~~~~l~~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~  106 (246)
                      +++++.++|.+.|++++.|-+|. ++..++-.+.|+..    .. ++..|..|.|.+  =|-|.|.+.+        ++.
T Consensus       179 d~~~~reIad~vga~l~~D~aH~~GLIa~g~~~~P~~~----aD-vvt~tThKtlrG--Prgg~I~~~~--------~~~  243 (405)
T d1kl1a_         179 DFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPY----AH-FVTTTTHKTLRG--PRGGMILCQE--------QFA  243 (405)
T ss_dssp             CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTT----CS-EEEEESSSTTCC--CSCEEEEECH--------HHH
T ss_pred             ChHHHHHHHhhhCCEEecchhhHhhhhhhhhcCChhhh----hh-heeccccccccC--CCCceEEecc--------hhH
Confidence            48889999999999999999988 44545433334322    12 667789999654  4667777776        888


Q ss_pred             HHHHHHhhhcCCCCc--hHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEeccccc
Q 042445          107 DSIKIFLNISSDPAT--FIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLL  184 (246)
Q Consensus       107 ~~l~~~~~~~~~~~~--~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~  184 (246)
                      +++.....++.-.+|  -..++.+.++.+......+...++..++++.|.+.|.+. |+..+........+++++....+
T Consensus       244 ~~i~~avfPg~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~~-G~~vv~ggTd~H~vlvdl~~~~~  322 (405)
T d1kl1a_         244 KQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE-GFTLVSGGTDNHLLLVDLRPQQL  322 (405)
T ss_dssp             HHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGGTC
T ss_pred             HHHHhhhCcccccCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcC-CceeecCCCccceeeccccccCC
Confidence            888877544332222  223333334443223455677778889999999999886 67644333456888888865432


Q ss_pred             cCCCChHHHHHHHHHhcCeEEe----cCCC--cCCCCeEEEEee------cChHHHHHHHHHHHHHHHH
Q 042445          185 EGINSDMEFALKLAKEESVIVL----PGIT--VGLKDWLRITFA------VEPSALENGLGRMKAFYDR  241 (246)
Q Consensus       185 ~~~~~~~~~~~~ll~~~gi~v~----pg~~--f~~~~~iRls~~------~~~~~l~~~~~~l~~~~~~  241 (246)
                           +-..+.++|.+.||.+.    |+..  ...++.|||+..      ..++++++..+.|.++++.
T Consensus       323 -----~g~~ae~~Le~agI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~dm~~ia~~I~~~l~~  386 (405)
T d1kl1a_         323 -----TGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKN  386 (405)
T ss_dssp             -----CHHHHHHHHHHHTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTC
T ss_pred             -----cHHHHHHHHHHcCeEEcCCcCCCCCCCCCCCCceeecCHHHHhCCCCHHHHHHHHHHHHHHHhc
Confidence                 56667888999999886    3321  112589999865      2788999999999988853

>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Subgroup IV putative aspartate aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.13  E-value=3.7e-09  Score=85.82  Aligned_cols=203  Identities=13%  Similarity=0.050  Sum_probs=122.0

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHc--CCEEEEccccCCcccCCCCCccccccCCcccEEEEccccccc-ccCCceE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKL--GIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRG-IVPGLRL   88 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~--~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~g~r~   88 (246)
                      +.++..+.||+..+   +++|.++|+++  +.++++|.+.+.+...    ..+.   ...--+++.|.-|.+ |.||  +
T Consensus       125 ~~~h~eTstG~~~~---i~~i~~~~~~~~~~~l~~vDavss~g~~~----i~~d---~~~iD~~~~~sqK~l~gppG--~  192 (348)
T d1iuga_         125 LLVHSETSTGALAD---LPALARAFKEKNPEGLVGADMVTSLLVGE----VALE---AMGVDAAASGSQKGLMCPPG--L  192 (348)
T ss_dssp             EEESEETTTTEECC---HHHHHHHHHHHCTTCEEEEECTTTBTTBC----CCSG---GGTCSEEEEESSSTTCCCSC--E
T ss_pred             EEEecchhhhhhcc---HHHHHHHHHhhhccceeechhhhcccccc----cccc---cccCCEEEeccccceecCCc--e
Confidence            55566678999988   67777788877  4888999877643311    1222   222237788899988 6677  6


Q ss_pred             EEEEeeCCCCCcchhhHHHH-------------HHHHh-h-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 042445           89 GWLVTSDPNGILQDSGIVDS-------------IKIFL-N-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKC  153 (246)
Q Consensus        89 G~i~~~~~~~~~~~~~~~~~-------------l~~~~-~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l  153 (246)
                      |+++.++        +.+++             +.... . ..++++....+++..+|+...+. ..+..+..+..++.+
T Consensus       193 ~~v~~s~--------~~le~~~~~~~~~dl~~~~~~~~~~~~~~Tp~v~~i~~l~~aL~~~~~~-~~~~~~~~~~~~~~~  263 (348)
T d1iuga_         193 GFVALSP--------RALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPR-LEEHLALKAWQNALL  263 (348)
T ss_dssp             EEEEECH--------HHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGG-HHHHHHHHHHHHHHH
T ss_pred             eeeeech--------HHHhhhcccccccchhhhhhhhccCcccccccchHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHH
Confidence            8888876        44332             22221 1 12245555666667777643222 223333333334444


Q ss_pred             HHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee-c-ChHHHHHH
Q 042445          154 CDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA-V-EPSALENG  231 (246)
Q Consensus       154 ~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~-~-~~~~l~~~  231 (246)
                      ...+++. |+.........-...+.+|...     +..+ +...|.++||.+.+|...-....+|++.. . +.++++..
T Consensus       264 ~~~~~~~-gl~~~~~~~s~~v~~~~~P~g~-----~~~~-~~~~l~~~gi~i~~G~~~l~~~~~RIg~mG~~~~~d~~~~  336 (348)
T d1iuga_         264 YGVGEEG-GLRPVPKRFSPAVAAFYLPEGV-----PYAR-VKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGV  336 (348)
T ss_dssp             HHHHHHT-TCEESCSSBCTTCEEEECCTTC-----CHHH-HHHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHH
T ss_pred             hhhhhhh-hhccChhhcCCeEEEEECCCCC-----CHHH-HHHHHHHCCeEEEcCccccCCCEEEEeCCCCCCHHHHHHH
Confidence            4444444 5543211111223445566432     3444 45678899999998865433678999854 3 88899999


Q ss_pred             HHHHHHHHHHH
Q 042445          232 LGRMKAFYDRH  242 (246)
Q Consensus       232 ~~~l~~~~~~~  242 (246)
                      ++.|++++++.
T Consensus       337 ~~~l~~~l~~~  347 (348)
T d1iuga_         337 AGMFREVLEEI  347 (348)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999999875

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=4.4e-10  Score=94.99  Aligned_cols=211  Identities=13%  Similarity=0.039  Sum_probs=110.4

Q ss_pred             CCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcc----------cCCCCCccc-cccCCcccEEEEcccccccccCCc
Q 042445           18 FHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLA----------FGNTPFVSM-GVFGSIVPLLTLGSISKRGIVPGL   86 (246)
Q Consensus        18 NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~----------~~~~~~~~~-~~~~~~~~~i~~~s~sK~~~~~g~   86 (246)
                      ...|.+++.+++++|.++|++||+++++|+++....          +.+...... ..+... .-++..|.+|.+++++ 
T Consensus       195 ~~gg~~~~~~~l~~i~~ia~~~g~~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~d~~s~s~~K~~~~~~-  272 (467)
T d2v1pa1         195 SAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKY-ADMLAMSAKKDAMVPM-  272 (467)
T ss_dssp             GGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGG-CSEEEEESSSTTCCSS-
T ss_pred             ccccccCCHHHHHHHHHHHHHcCCEEEEechhhhccccccccccccccCCcccccchhhccc-CCEEEecCCCCCCCCC-
Confidence            345788899999999999999999999999975321          111111000 011111 2244556788865543 


Q ss_pred             eEEEEEeeCCCCCcchhhHHHHHHHHhh-----hcC-CCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcC
Q 042445           87 RLGWLVTSDPNGILQDSGIVDSIKIFLN-----ISS-DPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEI  160 (246)
Q Consensus        87 r~G~i~~~~~~~~~~~~~~~~~l~~~~~-----~~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  160 (246)
                       .|++++.+. ...   ......+....     ..+ +.......++...+....   ..+..+...++.+.+.+.|++.
T Consensus       273 -gg~i~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~l~~~L~~~  344 (467)
T d2v1pa1         273 -GGLLCMKDD-SFF---DVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGM---NLDWLAYRIAQVQYLVDGLEEI  344 (467)
T ss_dssp             -CEEEEECSG-GGH---HHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHHT
T ss_pred             -ceeEEecch-hhh---hHHHhhcccccccccCcchhhhHHHHHHHHHHHhHHhh---hHHHHHHHHHHHHHHHHHHHhc
Confidence             355555552 111   12222222211     111 222233333333333221   1223333456777888888876


Q ss_pred             CCCccccCCCCceEEEEEec----cccccCCCChHHHHHHHHHhcCeEEecCCC-------------cCCCCeEEEEeec
Q 042445          161 PCITCPKKPEGSMFVMVKLN----YSLLEGINSDMEFALKLAKEESVIVLPGIT-------------VGLKDWLRITFAV  223 (246)
Q Consensus       161 ~~~~~~~~~~~g~~~~~~~~----~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~-------------f~~~~~iRls~~~  223 (246)
                      + .. + .+.++....+...    ....... ........++.+.||.......             +...+.+||++..
T Consensus       345 ~-~~-v-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ll~~~Gi~~~~~g~~~~~~~~~~~~~~~~~~~~vRlaip~  420 (467)
T d2v1pa1         345 G-VV-C-QQAGGHAAFVDAGKLLPHIPADQF-PAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPR  420 (467)
T ss_dssp             T-CC-E-EEECSSCEEEEHHHHSTTSCGGGC-HHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCT
T ss_pred             C-Cc-c-cCCCccceeecchhhcCCcchhhh-hhHHHHHHHHHHcCCeeecccccccccccccCCccCCCcceEEEecCC
Confidence            3 32 2 2222333332211    1100011 1344567788899986542211             1125789999763


Q ss_pred             ---ChHHHHHHHHHHHHHHHHH
Q 042445          224 ---EPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       224 ---~~~~l~~~~~~l~~~~~~~  242 (246)
                         ++++++.+++.|++++++.
T Consensus       421 ~~~T~eeiD~vv~~l~~v~~~~  442 (467)
T d2v1pa1         421 ATYTQTHMDFIIEAFKHVKENA  442 (467)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHTG
T ss_pred             CCCCHHHHHHHHHHHHHHHHHH
Confidence               8899999999999998643

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=99.08  E-value=1.6e-09  Score=91.30  Aligned_cols=221  Identities=10%  Similarity=0.006  Sum_probs=120.9

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCC-CccccccCC-----cccEEEEcccccccccCC
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTP-FVSMGVFGS-----IVPLLTLGSISKRGIVPG   85 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~-~~~~~~~~~-----~~~~i~~~s~sK~~~~~g   85 (246)
                      ++..| |-.|.+.+   +++|+++|+++|+++++|+++......... ..+....+.     ...-+++.|++|.++.++
T Consensus       179 v~~~~-~~~G~~~d---l~~I~~ia~~~g~~l~vD~A~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~  254 (462)
T d1c4ka2         179 VIQLG-TYDGTIYN---AHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFS  254 (462)
T ss_dssp             EEESB-CTTSEEEC---HHHHHHHHGGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCT
T ss_pred             EEEee-eeccchhh---HHHHHHHHHHcCCEEEEechhhccccccCcCCcchhhccccccccCCccEEEEecCccccccc
Confidence            55555 78898877   889999999999999999999865432211 111111111     112588999999987654


Q ss_pred             ceEEEEEeeCCCCCcchhh--HHHHHHHHhhh--cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 042445           86 LRLGWLVTSDPNGILQDSG--IVDSIKIFLNI--SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIP  161 (246)
Q Consensus        86 ~r~G~i~~~~~~~~~~~~~--~~~~l~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  161 (246)
                        .|.++..+...+.....  -...++.....  +++++......+..+.........++..+...++.+.+++.+.+++
T Consensus       255 --~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~t~sp~~~~~asl~~a~~~~~~~~g~~l~~~~~~~a~~~r~~l~~~~  332 (462)
T d1c4ka2         255 --QTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAG  332 (462)
T ss_dssp             --TCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             --ceEEEEeccccccccchhhhHHHHHHhhhhcccCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence              25555443211100000  01223333221  2244444444444444322234455566666677777777776643


Q ss_pred             CCcccc---------------------------CC----------CCceE------EEEEecccc-----c--cCCCChH
Q 042445          162 CITCPK---------------------------KP----------EGSMF------VMVKLNYSL-----L--EGINSDM  191 (246)
Q Consensus       162 ~~~~~~---------------------------~~----------~~g~~------~~~~~~~~~-----~--~~~~~~~  191 (246)
                      +.....                           .|          ....+      +.+..+...     .  .+.  +.
T Consensus       333 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~k~~l~~~gi~~~~g~~~~~G~--~~  410 (462)
T d1c4ka2         333 SMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGV--PA  410 (462)
T ss_dssp             CSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCC--CH
T ss_pred             hhhhcccccccccccccccchHhhhcccchhccCCcchhccccccCccceecccceeEEecCCccccccchhhcCC--cH
Confidence            321000                           00          00111      122221110     0  011  34


Q ss_pred             HHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHHhh
Q 042445          192 EFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDRHAE  244 (246)
Q Consensus       192 ~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~~~  244 (246)
                      ..+.+.|.++||.+--.    ..+.+|++++.  ++++++.+++.|.++.+.+.+
T Consensus       411 ~~~~~~L~~~gI~~e~~----~~~~i~~~~s~~~T~edid~li~aL~ei~r~~~~  461 (462)
T d1c4ka2         411 TIVANYLRDHGIIPEKS----DLNSILFLMTPAETPAKMNNLITQLLQLQRLIEE  461 (462)
T ss_dssp             HHHHHHHHHTTCCCSEE----CSSEEEEECCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCeeecc----CCCeEEEEecCCCCHHHHHHHHHHHHHHHHHHhc
Confidence            55677788999854321    26789999985  899999999999998877654

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

Probab=99.02  E-value=3.3e-09  Score=88.97  Aligned_cols=230  Identities=14%  Similarity=0.011  Sum_probs=139.4

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHH---HHHHcCCEEEEccccCCccc--CCCCCccccccCCcccEE
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAE---TAKKLGIMVIANEVYGHLAF--GNTPFVSMGVFGSIVPLL   72 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~---~~~~~~~~ii~De~y~~~~~--~~~~~~~~~~~~~~~~~i   72 (246)
                      +.+++.+.++    +.+..+|.||.+=+.+++.+|++   .|+++|+++.+|-+|+++..  ......-...+  ..---
T Consensus       190 ~~L~~~i~~~t~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~~~~~~~~~--~~aDS  267 (450)
T d1pmma_         190 KRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRL--PRVKS  267 (450)
T ss_dssp             HHHHHHCCTTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTS--TTEEE
T ss_pred             HHHHHHhhhCceEEEeeeeeccCCCccccchhhHHHHHHHHHhccCcEEEeehhhccceeeeechhhhhhhcc--cceeE
Confidence            4556666655    77888999999988776666654   46778999999999987642  22111111111  11235


Q ss_pred             EEcccccccccCCceEEEEEeeCCCCCcchhhHHHHHHH---------HhhhcCCCCc--hHHHHHHHHHhhchHHHHHH
Q 042445           73 TLGSISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKI---------FLNISSDPAT--FIQGAVPQILEKTEEEFFSK  141 (246)
Q Consensus        73 ~~~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~---------~~~~~~~~~~--~~q~~~~~~l~~~~~~~~~~  141 (246)
                      +..|..|.+ ..-..+||++..+.       ........         ....+...+.  .........+......-+++
T Consensus       268 i~~s~HK~~-~~p~g~g~l~~r~~-------~~~~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~~~~~~l~~~G~~G~~~  339 (450)
T d1pmma_         268 ISASGHKFG-LAPLGCGWVIWRDE-------EALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTK  339 (450)
T ss_dssp             EEEETTTTT-CCCSSCEEEEESSG-------GGSCGGGCEEEEETTEEEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHH
T ss_pred             eecChhhcc-CCCCCeeEEEecCh-------hhhhhhcccccCcCCCCcCCCcccCccchHHHHHHHHHHhhhhHHHHHH
Confidence            566788984 43456899999773       21111110         0011112222  12222233333333566778


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCcccc--CCCCc-eEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC----C
Q 042445          142 IIDILRETADKCCDRLKEIPCITCPK--KPEGS-MFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL----K  214 (246)
Q Consensus       142 ~~~~~~~~~~~l~~~L~~~~~~~~~~--~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----~  214 (246)
                      ..+...+.++.+.+.|++.+++..+.  .|..+ ..+.+++......+.  +...+...|.++|..|. ...+..    .
T Consensus       340 ~~~~~~~la~~l~~~L~~~~~~el~~~~~p~~~l~~V~Fr~~~~~~~~~--~~~~l~~~L~~~Gw~v~-~~~~p~~~~~~  416 (450)
T d1pmma_         340 VQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGY--TLYDLSERLRLRGWQVP-AFTLGGEATDI  416 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCEEEEEECCTTTBSSEEEEEECTTCCCSS--CHHHHHHHHHTTTCBCC-EEECCTTCTTC
T ss_pred             HHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCCceEEEEEecCCcccCCC--CHHHHHHHHHHcCCeee-ccCcCCCcCCc
Confidence            88888999999999999988766432  23333 234555544322222  44456777889997653 222221    3


Q ss_pred             CeEEEEeec--ChHHHHHHHHHHHHHHHHHhh
Q 042445          215 DWLRITFAV--EPSALENGLGRMKAFYDRHAE  244 (246)
Q Consensus       215 ~~iRls~~~--~~~~l~~~~~~l~~~~~~~~~  244 (246)
                      ..+|+.+..  +.+.++..++.|+++++++++
T Consensus       417 ~~lRvvv~~~~t~e~~d~lv~dl~~~v~~l~~  448 (450)
T d1pmma_         417 VVMRIMCRRGFEMDFAELLLEDYKASLKYLSD  448 (450)
T ss_dssp             EEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            579999885  888999999999999988765

>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.00  E-value=4.4e-08  Score=81.08  Aligned_cols=198  Identities=14%  Similarity=0.061  Sum_probs=130.6

Q ss_pred             hHHHHHHHHHHcCCEEEEccccC-CcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCC---------
Q 042445           28 FVSPIAETAKKLGIMVIANEVYG-HLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPN---------   97 (246)
Q Consensus        28 ~~~~l~~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~---------   97 (246)
                      +++++.++|.+.|++++.|-+|. +|..++....|+...     -|+.+|..|.|.  |=|-|.|.+.+..         
T Consensus       196 d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sPl~~a-----Dvvt~tTHKtlr--GPrgGiI~~~~~~~~~~~~~~~  268 (470)
T d1rv3a_         196 DYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHC-----HVVTTTTHKTLR--GCRAGMIFYRRGVRSVDPKTGK  268 (470)
T ss_dssp             CHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGGTC-----SEEEEESSGGGC--CCSCEEEEEECSBCC-------
T ss_pred             CHHHHHHHHhccCCeEEecchhhhhhccccccCChhhee-----eeeeeehhhhcc--CCcceEEEEccccccccccccc
Confidence            48888999999999999999988 444454334444322     288889999964  4455777776520         


Q ss_pred             CCcchhhHHHHHHHHhhhcC--CCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEE
Q 042445           98 GILQDSGIVDSIKIFLNISS--DPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFV  175 (246)
Q Consensus        98 ~~~~~~~~~~~l~~~~~~~~--~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~  175 (246)
                      ....  ++.+++...-.++.  ++..-..++.+.++.+.......+..++..++++.|.+.|.+. |+..+........+
T Consensus       269 ~~~~--~~~~~i~~avFPg~qggph~~~IAa~Ava~~ea~~~~fk~Ya~qvv~NAk~La~~L~~~-G~~v~~ggTdnHlv  345 (470)
T d1rv3a_         269 EILY--NLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVEL-GYKIVTGGSDNHLI  345 (470)
T ss_dssp             CCBC--CHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEE
T ss_pred             hhHH--HHHHHHhhhcCccccccchhhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhC-CceeccCCCCCceE
Confidence            0000  36777777643332  2223333333334443333345777788889999999999886 66644444557888


Q ss_pred             EEEeccccccCCCChHHHHHHHHHhcCeEEe----cCCCcCC-CCeEEEEee------cChHHHHHHHHHHHHHHH
Q 042445          176 MVKLNYSLLEGINSDMEFALKLAKEESVIVL----PGITVGL-KDWLRITFA------VEPSALENGLGRMKAFYD  240 (246)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~----pg~~f~~-~~~iRls~~------~~~~~l~~~~~~l~~~~~  240 (246)
                      ++++....+     +-..+.+.|.+.||.+.    |+..... ++.|||+..      ..++++++..+.|.++++
T Consensus       346 lvdl~~~g~-----~g~~ae~~Le~~gI~~Nkn~iP~D~~~~~~sGiRiGT~alTtrG~~e~dm~~iA~~I~~~l~  416 (470)
T d1rv3a_         346 LVDLRSKGT-----DGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIE  416 (470)
T ss_dssp             EEEGGGGTC-----CHHHHHHHHHHTTEECEEECCSSCSCTTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             EEeecccCC-----cHHHHHHHHHHcCcEECCCcCCCCCCCCCCCeeEecCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            888765432     56667888999999875    4432112 688999865      278889999998888774

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.94  E-value=1.5e-08  Score=85.43  Aligned_cols=213  Identities=9%  Similarity=-0.021  Sum_probs=124.8

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCcc-ccccCCcccEEEEcccccccccCCceEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVS-MGVFGSIVPLLTLGSISKRGIVPGLRLGW   90 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~-~~~~~~~~~~i~~~s~sK~~~~~g~r~G~   90 (246)
                      +.+..++.||.+=+   +++|.++|++||+|+.+|-+|+++......... +..+..- . -+.-++.|.++.| ...|.
T Consensus       240 vataGtt~~G~iDp---l~~I~~i~~~~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~a-D-Sit~d~HK~l~~P-~~~g~  313 (476)
T d1js3a_         240 VATLGTTSCCSFDN---LLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFA-D-SFNFNPHKWLLVN-FDCSA  313 (476)
T ss_dssp             EEEBSCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGC-S-EEEECHHHHSSCC-SSCEE
T ss_pred             eecCCCccceeecc---HHHHHHHHHhcCcEEEEecccchhhhhhcchhhhhcCCccc-c-eeeecCccccccC-Cccee
Confidence            66667788998855   999999999999999999999976643222211 2222211 2 3334578996665 46678


Q ss_pred             EEeeCCCCCcchhhHHHHH--------HHHh----------hhcCC-CCchHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 042445           91 LVTSDPNGILQDSGIVDSI--------KIFL----------NISSD-PATFIQGAVPQILEKTEEEFFSKIIDILRETAD  151 (246)
Q Consensus        91 i~~~~~~~~~~~~~~~~~l--------~~~~----------~~~~~-~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~  151 (246)
                      ++..+.       ......        ....          ..+.. .-+.....+...+......-+++..+...+.++
T Consensus       314 ~l~r~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~al~lw~~l~~~G~~g~~~~i~~~~~lA~  386 (476)
T d1js3a_         314 MWVKRR-------TDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSH  386 (476)
T ss_dssp             EEESCH-------HHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecccch-------HHHHHHHhcChhhhccccccccccccccccccccchhhHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence            877662       211111        0000          00000 111111222233332235567777777788899


Q ss_pred             HHHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec---ChHHH
Q 042445          152 KCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV---EPSAL  228 (246)
Q Consensus       152 ~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~---~~~~l  228 (246)
                      .+.+.|++.|++..+.+|.-+ .+.+++....  .  -+.+...++.++..+.+.+.. .....++|+++..   +++++
T Consensus       387 ~l~~~l~~~~~fel~~~p~l~-iV~Fr~~~~d--~--~n~~l~~~l~~~G~~~~s~t~-~~g~~~lR~~i~n~~Tt~~di  460 (476)
T d1js3a_         387 EFEAFVLQDPRFEVCAEVTLG-LVCFRLKGSD--G--LNEALLERINSARKIHLVPCR-LRGQFVLRFAICSRKVESGHV  460 (476)
T ss_dssp             HHHHHHHHCTTEEECSCCCSS-EEEEEESSCH--H--HHHHHHHHHHHHTSCBCEEEE-ETTEEEEEEECCCTTCCHHHH
T ss_pred             HHHHHHhcCCCeEEECCCceE-EEEEEccCCh--H--HHHHHHHHHHhcCCEEEeeee-ECCEEEEEEEeCCCCCCHHHH
Confidence            999999998888755555544 3555554321  0  033444444433335554422 2224489999873   68889


Q ss_pred             HHHHHHHHHHHHHHh
Q 042445          229 ENGLGRMKAFYDRHA  243 (246)
Q Consensus       229 ~~~~~~l~~~~~~~~  243 (246)
                      +.+++.|++..+++.
T Consensus       461 d~~~~~i~~~a~~ll  475 (476)
T d1js3a_         461 RLAWEHIRGLAAELL  475 (476)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999887653

>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=98.93  E-value=8.8e-08  Score=79.02  Aligned_cols=200  Identities=15%  Similarity=0.063  Sum_probs=128.8

Q ss_pred             hHHHHHHHHHHcCCEEEEccccC-CcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCCCc------
Q 042445           28 FVSPIAETAKKLGIMVIANEVYG-HLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGIL------  100 (246)
Q Consensus        28 ~~~~l~~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~------  100 (246)
                      +++++.++|.+.|++++.|-+|. +|..++....|+...     -|+.+|..|.|.  |=|-|.|.+.+...-.      
T Consensus       192 d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sP~~~a-----Dvvt~tTHKTlr--GPrgGiIl~~~~~~~~~~~~~~  264 (463)
T d2a7va1         192 DYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHA-----DIVTTTTHKTLR--GARSGLIFYRKGVKAVDPKTGR  264 (463)
T ss_dssp             CHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGGTC-----SEEEEESSGGGC--SCSCEEEEEECSEEEEETTTEE
T ss_pred             CHHHHHHHhhcccceEEechhhhhHHhhhhhhcChhhhh-----hhhhchhhhhhc--CCCceEEEEcccccccccccCc
Confidence            48889999999999999999988 444454333344222     177789999964  5566777776520000      


Q ss_pred             -chhhHHHHHHHHhhhcC--CCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEE
Q 042445          101 -QDSGIVDSIKIFLNISS--DPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMV  177 (246)
Q Consensus       101 -~~~~~~~~l~~~~~~~~--~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~  177 (246)
                       ...++.+++...-.++.  ++..-..++.+.++.+......++..++..++++.|.+.|.+. |+..+........+++
T Consensus       265 ~~~~~~~~~i~~avFPg~qggph~h~iAa~Ava~~ea~~~~fk~Ya~qVv~NAk~La~~L~~~-G~~vv~ggTdnHlvlv  343 (463)
T d2a7va1         265 EIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER-GYSLVSGGTDNHLVLV  343 (463)
T ss_dssp             EEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEE
T ss_pred             cchhHHHHHhhhhcCcccchhhhhhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCCCCceeee
Confidence             00034567776643332  2222223333334443233456677777889999999999886 6664444555778888


Q ss_pred             EeccccccCCCChHHHHHHHHHhcCeEEe----cCCCcCC-CCeEEEEee------cChHHHHHHHHHHHHHHH
Q 042445          178 KLNYSLLEGINSDMEFALKLAKEESVIVL----PGITVGL-KDWLRITFA------VEPSALENGLGRMKAFYD  240 (246)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~ll~~~gi~v~----pg~~f~~-~~~iRls~~------~~~~~l~~~~~~l~~~~~  240 (246)
                      ++....+     +-..+...|.+.||.+.    |+...+. ++.|||+..      ..++++++..+.|.++++
T Consensus       344 dl~~~~~-----~G~~ae~~Le~~gI~~Nkn~iP~D~~~~~~sGiRiGT~a~TtrG~~e~dm~~iA~~I~~~l~  412 (463)
T d2a7va1         344 DLRPKGL-----DGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN  412 (463)
T ss_dssp             ECTTTTC-----CHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             eccccCC-----CHHHHHHHHHhccCccCCccCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            8755322     56677889999999886    3322111 678999865      267889999999888774

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=98.91  E-value=7.8e-09  Score=84.10  Aligned_cols=210  Identities=13%  Similarity=0.043  Sum_probs=111.9

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      .....+|.||...+..   ++.++|+++|+++++|.+.+....    ...+..+    . +.+.|.+|.++++|.-.+++
T Consensus       141 ~~~~v~~~tg~~~~~~---~i~~~~~~~~al~~vDavss~g~~----~id~~~~----d-i~~~s~~k~~~~~~~~~~~~  208 (361)
T d2c0ra1         141 NAAYLHLTSNETIEGA---QFKAFPDTGSVPLIGDMSSDILSR----PFDLNQF----G-LVYAGAQKNLGPSGVTVVIV  208 (361)
T ss_dssp             TEEEEEEESEETTTTE---ECSSCCCCTTSCEEEECTTTTTSS----CCCGGGC----S-EEEEETTTTTCCSSCEEEEE
T ss_pred             cceEEEEecccceecc---eEEEeeccCCceEEEEeecccccc----ccccccc----e-eEEEecccccccccCcEEEE
Confidence            4445568899998854   556788999999999998875331    1122222    2 45667899988877444333


Q ss_pred             EeeCCCCC---cchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhhcCCCCcc-c
Q 042445           92 VTSDPNGI---LQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADKCCDRLKEIPCITC-P  166 (246)
Q Consensus        92 ~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~  166 (246)
                      ........   ....................++....++...+.... ...........++++..+............ .
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (361)
T d2c0ra1         209 REDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGC  288 (361)
T ss_dssp             EGGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEES
T ss_pred             EhHHhhhCccccccccccccccccccccccccceeeehhhhHHHhhhhccchHHHHHHHHHHHHHhhhhhhhcccccccC
Confidence            32211000   000011111111111111222222222222222111 222334444445555555555554322211 1


Q ss_pred             cCC--CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHH
Q 042445          167 KKP--EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDR  241 (246)
Q Consensus       167 ~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~  241 (246)
                      ..+  .....+.+.++...      +.+.+...|+++||.+..|...  -+.+|+|+..  +.|+++++++.|+++.++
T Consensus       289 ~~~~~rS~~~~~~~~~~~~------~~~~~~~~L~~~GI~~~~G~~~--~g~~RIs~~~~~~~edv~~Lv~~l~~~~~~  359 (361)
T d2c0ra1         289 VDVDSRSDMNITFRLASEE------LEKEFVKASEQEGFVGLKGHRS--VGGLRASIYNAVPYESCEALVQFMEHFKRS  359 (361)
T ss_dssp             SCGGGBCSSEEEEECSCHH------HHHHHHHHHHHTTEESCBCCTT--TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             CChhhccceEEEEECCCcc------cHHHHHHHHHHCCCEEecCCCc--CCeEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence            122  12344555565432      4556678889999999888643  2459999885  889999999998887654

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

Probab=98.75  E-value=3.2e-07  Score=75.13  Aligned_cols=213  Identities=13%  Similarity=0.057  Sum_probs=121.6

Q ss_pred             hhhhhhccc-cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCccc-CCCCCccccccCCcccEEEEcccccc
Q 042445            3 LINQDITRE-FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAF-GNTPFVSMGVFGSIVPLLTLGSISKR   80 (246)
Q Consensus         3 ~~~~~~~~~-~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~-~~~~~~~~~~~~~~~~~i~~~s~sK~   80 (246)
                      .+++.++++ -...+.+..|...   +++++.++|+++|+++|+|.+++.++. .+..   +..++.  -.++-.+.+|.
T Consensus       114 ~~~~~i~~~tk~i~~~~~~g~~~---d~~~i~~~~~~~~i~lieD~a~a~ga~~~g~~---~g~~g~--~~~~Sf~~~K~  185 (384)
T d1b9ha_         114 AVAAAVTPRTKVIMPVHMAGLMA---DMDALAKISADTGVPLLQDAAHAHGARWQGKR---VGELDS--IATFSFQNGKL  185 (384)
T ss_dssp             HHHHHCCTTEEEECCBCGGGCCC---CHHHHHHHHHHHTCCBCEECTTCTTCEETTEE---GGGSSS--CEEEECCTTSS
T ss_pred             hhccccccccccccccccccccc---ccccchhhhhhhhhhhhhhhceecccccCCEe---cCcccc--cceeccccccc
Confidence            344445544 1112336666654   588999999999999999999986553 3321   112221  12333445788


Q ss_pred             cccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhh------------------cCCCCchHHHHHHHHHhhchHHHHHHH
Q 042445           81 GIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNI------------------SSDPATFIQGAVPQILEKTEEEFFSKI  142 (246)
Q Consensus        81 ~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~------------------~~~~~~~~q~~~~~~l~~~~~~~~~~~  142 (246)
                      +++.  .-|.++++++       ++.+.++.....                  .+.++.+..+.+..-|+     .+++.
T Consensus       186 i~~g--~GG~i~t~~~-------~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~n~rms~l~Aaig~~qL~-----~ld~~  251 (384)
T d1b9ha_         186 MTAG--EGGAVVFPDG-------ETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLA-----RLDEQ  251 (384)
T ss_dssp             SCSS--SCEEEEECTT-------CHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHT-----THHHH
T ss_pred             cccc--ccchhhhhhH-------HHHHHHHHHHhcCCCCccccccccccccccccccccchhhhhhhhhh-----hcccc
Confidence            6543  3577888775       666666655321                  12344454333333333     35555


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCccccCC-----CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCc------
Q 042445          143 IDILRETADKCCDRLKEIPCITCPKKP-----EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITV------  211 (246)
Q Consensus       143 ~~~~~~~~~~l~~~L~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f------  211 (246)
                      .+.-+++.+.+.+.|+.++++.....+     ...++..+.++...    .+..+.+.+.|+++||.+++....      
T Consensus       252 ~~~R~~~~~~y~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~----~~~Rd~l~~~L~~~GI~~~~~y~plh~~~~  327 (384)
T d1b9ha_         252 IAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLT----EERRNALVDRLVEAGLPAFAAFRAIYRTDA  327 (384)
T ss_dssp             HHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCC----HHHHHHHHHHHHHTTCCEEECCCCGGGSHH
T ss_pred             hhhhhhhhhhhhhhhhcccccccccccccccccccccccceecccc----cccHHHHHHHHHHCCCCeeeeCcchhcCHH
Confidence            555567778888888887765422111     11233333343221    013345677788999988765320      


Q ss_pred             ----CC-------------------CCeEEEEeec--C-hHHHHHHHHHHHHHHHH
Q 042445          212 ----GL-------------------KDWLRITFAV--E-PSALENGLGRMKAFYDR  241 (246)
Q Consensus       212 ----~~-------------------~~~iRls~~~--~-~~~l~~~~~~l~~~~~~  241 (246)
                          +.                   ++.+.|-...  + +++++..++.|++++++
T Consensus       328 ~~~~~~~~~~~~~~~~~~Pna~~l~~~~l~LP~~~~Lt~e~ei~~I~~~i~~~l~~  383 (384)
T d1b9ha_         328 FWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADAVAR  383 (384)
T ss_dssp             HHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCcccccccccCCHHHHHHHhCEEEccCCCCCCCHHHHHHHHHHHHHHHhh
Confidence                00                   2445565543  5 56899999999998865

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.73  E-value=5.9e-07  Score=73.00  Aligned_cols=209  Identities=11%  Similarity=0.072  Sum_probs=116.2

Q ss_pred             hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCccc-CCCCCccccccCCcccEEEEcc
Q 042445            2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAF-GNTPFVSMGVFGSIVPLLTLGS   76 (246)
Q Consensus         2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~-~~~~~~~~~~~~~~~~~i~~~s   76 (246)
                      |.+++.++++    +++   +..|...+   +++|.++|+++|+++|+|.+++.+.. .+.      ..+..+..++-..
T Consensus       110 ~~l~~~i~~~tkaIi~~---h~~G~~~~---~~~i~~i~~~~~i~vIeD~a~a~g~~~~~~------~~g~~g~~~~Sf~  177 (376)
T d1mdoa_         110 EHIEAAITPQTKAIIPV---HYAGAPAD---LDAIYALGERYGIPVIEDAAHATGTSYKGR------HIGARGTAIFSFH  177 (376)
T ss_dssp             HHHHHHCCTTEEEECCB---CGGGCCCC---HHHHHHHHHHHTCCBCEECTTCTTCEETTE------ETTSSSEEEEECC
T ss_pred             HHHHHhcCCCCeEEEEe---CCCCCccc---hhHHHHHHHhcCceEEeccchhccCeeCCe------ecccccCccccCC
Confidence            4566666665    333   56787654   88899999999999999999986542 221      1122222222233


Q ss_pred             cccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhc-------------------------CCCCchHHHHHHHHH
Q 042445           77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNIS-------------------------SDPATFIQGAVPQIL  131 (246)
Q Consensus        77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~-------------------------~~~~~~~q~~~~~~l  131 (246)
                      .+|.++.++  -|.+++.+.       ++.++++.....+                         ..++.+..+....-|
T Consensus       178 ~~K~l~~g~--GG~i~t~~~-------~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aai~~~qL  248 (376)
T d1mdoa_         178 AIKNITCAE--GGIVVTDNP-------QFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQL  248 (376)
T ss_dssp             TTSSSCSSS--CEEEEESCH-------HHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHH
T ss_pred             CcCCCCCCC--CCEEEEech-------hHHHHHHhhcccCCcccccccccccccccccchhcccccccchhhhhhhhhhh
Confidence            468865433  477777663       6666666553211                         122222222222222


Q ss_pred             hhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCC---CceEEEE-EeccccccCCCChHHHHHHHHHhcCeEEec
Q 042445          132 EKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPE---GSMFVMV-KLNYSLLEGINSDMEFALKLAKEESVIVLP  207 (246)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~---~g~~~~~-~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p  207 (246)
                           ..+++..++.+++++.+.+.|++++.+.......   ..++.++ .++.... +  .+.+.+...|+++||.+++
T Consensus       249 -----~~~~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~Rd~l~~~L~~~gI~~~~  320 (376)
T d1mdoa_         249 -----QKLDALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDEARC-G--ITRDALMASLKTKGIGTGL  320 (376)
T ss_dssp             -----HTHHHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEEEECCHHHH-S--SCHHHHHHHHHHTTBCCBC
T ss_pred             -----hhhhHHHHHHhhhhhhhhhhcccccccccccccccccccccccccccccccc-h--hhHHHHHHHHHHCCCCeee
Confidence                 2355555666777888888888775543211111   1222222 2222110 0  1334556778899998875


Q ss_pred             CCCc-----------CC----------CCeEEEEeec--ChHHHHHHHHHHHHHH
Q 042445          208 GITV-----------GL----------KDWLRITFAV--EPSALENGLGRMKAFY  239 (246)
Q Consensus       208 g~~f-----------~~----------~~~iRls~~~--~~~~l~~~~~~l~~~~  239 (246)
                      ....           ..          .+.+.+-+..  ++++++..++.|.+++
T Consensus       321 ~y~~~~~~~~~~~~~~~~~~p~a~~~~~~~i~LP~~~~lt~~ei~~I~~~i~~i~  375 (376)
T d1mdoa_         321 HFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIA  375 (376)
T ss_dssp             CCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             ECcchhcCHHHHhhCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHh
Confidence            4221           00          3556665443  7899999999988864

>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Spore coat polysaccharide biosynthesis protein C
species: Helicobacter pylori [TaxId: 210]

Probab=98.68  E-value=3.4e-07  Score=74.51  Aligned_cols=197  Identities=12%  Similarity=0.078  Sum_probs=115.6

Q ss_pred             CCCccCCChhhHHHHHHHHHHcCCEEEEccccCCccc-CCCCCccccccCCcccEEEEccc--ccccccCCceEEEEEee
Q 042445           18 FHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAF-GNTPFVSMGVFGSIVPLLTLGSI--SKRGIVPGLRLGWLVTS   94 (246)
Q Consensus        18 NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~-~~~~~~~~~~~~~~~~~i~~~s~--sK~~~~~g~r~G~i~~~   94 (246)
                      +.-|...+   +++|.++|+++|+++|+|.+++.++. .+...   ..++    .+.+.||  +|.+.+.+  -|.+++.
T Consensus       128 h~~G~~~~---~~~i~~~~~~~~i~lIEDaaqa~Ga~~~~~~~---G~~g----~~~~~Sf~~~K~l~~g~--GG~i~t~  195 (371)
T d2fnua1         128 DYAGKSVE---VESVQKLCKKHSLSFLSDSSHALGSEYQNKKV---GGFA----LASVFSFHAIKPITTAE--GGAVVTN  195 (371)
T ss_dssp             CGGGCCCC---HHHHHHHHHHHTCEEEEECTTCTTCEETTEET---TSSS----SEEEEECCTTSSSCCSS--CEEEEES
T ss_pred             cccccccc---cccccccccccchhhccchhhccCceeccccC---Cccc----ccccccccccccccccc--ceEEEee
Confidence            55666554   78899999999999999999997553 22111   1121    1334444  78865544  4777777


Q ss_pred             CCCCCcchhhHHHHHHHHhh-----------------hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh
Q 042445           95 DPNGILQDSGIVDSIKIFLN-----------------ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRL  157 (246)
Q Consensus        95 ~~~~~~~~~~~~~~l~~~~~-----------------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L  157 (246)
                      +.       ++.++++....                 ..+.++.+..+.+..-|+     .+++..+.-+++.+.+.+.|
T Consensus       196 ~~-------~~~~~~~~~~~~g~~~~~~~~~~~~~~G~n~r~sel~Aaigl~qL~-----~l~~~~~~R~~~~~~y~~~l  263 (371)
T d2fnua1         196 DS-------ELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLK-----KAPFLMQKREEAALTYDRIF  263 (371)
T ss_dssp             CH-------HHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHT-----THHHHHHHHHHHHHHHHHHH
T ss_pred             ch-------hhhhhcccccccccccccccccccccccccccccchhhhhhhhhhh-----hccchhhhhhhhhhhhcccc
Confidence            64       77777776532                 111344444444444443     24444444556666777778


Q ss_pred             hcCCCCccccCC----CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCc-----------CC---------
Q 042445          158 KEIPCITCPKKP----EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITV-----------GL---------  213 (246)
Q Consensus       158 ~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f-----------~~---------  213 (246)
                      ++++++....++    ...+...+.+....    ....+.+.+.|+++||.+++....           ..         
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~r~~~~~~L~~~gI~~~~~y~pl~~~~~~~~~~~~~~~pnae~~  339 (371)
T d2fnua1         264 KDNPYFTPLHPLLKDKSSNHLYPILMHQKF----FTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDF  339 (371)
T ss_dssp             TTCSSEEESGGGCSSCCCCSCEEEEECGGG----GGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHH
T ss_pred             cccccccccccccccccccccccccccccc----hhHHHHHHHHHHHCCCCcceeCcccccCHHHHhccccCCCHHHHHH
Confidence            777655422111    11122223344321    024456677788999998765431           00         


Q ss_pred             -CCeEEEEeec--ChHHHHHHHHHHHHHHHHH
Q 042445          214 -KDWLRITFAV--EPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       214 -~~~iRls~~~--~~~~l~~~~~~l~~~~~~~  242 (246)
                       .+.+.|-+..  ++++++..++.|.++++++
T Consensus       340 ~~~~l~LP~~~~lt~~di~~I~~~i~~~~~~~  371 (371)
T d2fnua1         340 YHAEISLPCHANLNLESVQNIAHSVLKTFESF  371 (371)
T ss_dssp             HHHEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HhCeEECcCCCCCCHHHHHHHHHHHHHHHHcC
Confidence             2445554443  8899999999999998764

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

Probab=98.46  E-value=7.7e-07  Score=71.76  Aligned_cols=206  Identities=15%  Similarity=0.008  Sum_probs=101.7

Q ss_pred             CCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEee
Q 042445           15 FQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTS   94 (246)
Q Consensus        15 ~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~   94 (246)
                      +-+|-||.+.+   +++|.++|+++|+++|+|-+.+.....    ..+..+   +  +.+.+++|.++++|. .|+++..
T Consensus       144 ~~~~~tg~~~~---~~~i~~~~~~~g~l~ivDavqs~g~~~----id~~~~---~--vd~~~~~~~k~~~~~-~~~~~~~  210 (360)
T d1w23a_         144 YLHITSNNTIY---GTQYQNFPEINHAPLIADMSSDILSRP----LKVNQF---G--MIYAGAQKNLGPSGV-TVVIVKK  210 (360)
T ss_dssp             EEEEESEETTT---TEECSSCCCCCSSCEEEECTTTTTSSC----CCGGGC---S--EEEEETTTTTSCTTC-EEEEEEH
T ss_pred             eeEecCCcccc---ceeeeeccccceeeEEeeccccccccc----cccccc---c--ceEEeeccccccCCc-ceeeEec
Confidence            34578898887   456677889999999999988754321    112222   2  556677787766553 3444322


Q ss_pred             CC----CCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHHHHHhhcCCCCcc-ccC
Q 042445           95 DP----NGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEE-EFFSKIIDILRETADKCCDRLKEIPCITC-PKK  168 (246)
Q Consensus        95 ~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~  168 (246)
                      ..    .............................+....+....+ .......+..++................. ...
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (360)
T d1w23a_         211 DLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAE  290 (360)
T ss_dssp             HHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSC
T ss_pred             hhhhcccccCCcchhhhhhhhhhhhcccccceeeechhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhcccccccCCC
Confidence            20    0000000111111111111112222222222222221111 11222223333333333333333222211 111


Q ss_pred             C--CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHH
Q 042445          169 P--EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDR  241 (246)
Q Consensus       169 ~--~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~  241 (246)
                      +  .+...+.+.+++..      ..+.+...|.++||.+..|..+.  +.+|+|+..  +.|+++.+++.|+++.++
T Consensus       291 ~~~rS~~vvsf~i~~~~------~~~~~~~~l~~~GI~~~~G~~~~--ggiRiS~~~~~t~e~V~~Li~~~~~~~~~  359 (360)
T d1w23a_         291 KGSRSLMNVTFNLRNEE------LNQQFLAKAKEQGFVGLNGHRSV--GGCRASIYNAVPIDACIALRELMIQFKEN  359 (360)
T ss_dssp             GGGBCSSEEEEECSSHH------HHHHHHHHHHHTTEESCBCCTTT--CSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             hhhcceeEEEEEcCCCc------cHHHHHHHHHHCCCeeeeCCCcc--CcEEEEeeCCCCHHHHHHHHHHHHHHHhc
Confidence            1  12234445555432      34445567889999988876542  469999864  788888888888887653

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

Probab=98.44  E-value=4.4e-06  Score=66.88  Aligned_cols=209  Identities=11%  Similarity=-0.061  Sum_probs=105.3

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL   91 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i   91 (246)
                      ..++.+|-||+..+...+     .+..+++.+++|-+.+....      .+   +.+.--+.+.|.+|.+++|+.-.+++
T Consensus       143 ~v~~~~~~t~~~~~~~~i-----~~~~~~~~v~vDa~~~~~~~------~v---d~~~~dv~~~ss~k~~~~~~~~~~~~  208 (360)
T d1bjna_         143 YMHYCPNETIDGIAIDET-----PDFGADVVVAADFSSTILSR------PI---DVSRYGVIYAGAQKNIGPAGLTIVIV  208 (360)
T ss_dssp             CEEECSEETTTTEECCCC-----CCCCTTCCEEEECTTTTTSS------CC---CGGGCSEEEEETTTTTSSTTCEEEEE
T ss_pred             EEEecccccccCccccce-----ecccccceeeeeeeccccce------ee---eeccceeEEEEcccccccCCCceeEe
Confidence            445556888877664332     24567899999976653221      11   11112266777888877766444444


Q ss_pred             EeeCCCCCcchh---hHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccc
Q 042445           92 VTSDPNGILQDS---GIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPK  167 (246)
Q Consensus        92 ~~~~~~~~~~~~---~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~  167 (246)
                      ............   ........... .....++....+....+........+...+...+....+...+..........
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (360)
T d1bjna_         209 REDLLGKANIACPSILDYSILNDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRNDV  288 (360)
T ss_dssp             EGGGCSCCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEECCB
T ss_pred             eehhhhhccccCCcchhhHHHHhhhhhccccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhccccccccC
Confidence            433321111000   00111111111 11122222222222222211123344444455555555555555443222111


Q ss_pred             CCC--CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHH
Q 042445          168 KPE--GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       168 ~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~  242 (246)
                      .+.  ....+.+.+++..      +.+.+...|.++||.+..|...  -+.+|+|+..  ++|+++++++.|+++.+++
T Consensus       289 ~~~~rs~~v~~f~~~~~~------~~~~~~~~l~~~Gi~~~~G~~~--~g~~Ris~~~~~t~edV~~li~~l~e~~~~~  359 (360)
T d1bjna_         289 AKRNRSRMNVPFQLADSA------LDKLFLEESFAAGLHALKGHRV--VGGMRASIYNAMPLEGVKALTDFMVEFERRH  359 (360)
T ss_dssp             CGGGBCSSEEEEEESSGG------GHHHHHHHHHHTTEECCBCCTT--TCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             CcccccceEEEEEcCCcc------cHHHHHHHHHHCCCEeecCCCc--cCeEEEEecCCCCHHHHHHHHHHHHHHHHHc
Confidence            111  1233445565442      4455567788999999887532  2469999874  8899999999999877654

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

Probab=98.10  E-value=8.2e-05  Score=59.98  Aligned_cols=198  Identities=13%  Similarity=0.085  Sum_probs=108.5

Q ss_pred             CCCccCCChhhHHHHHHHHHHcCCEEEEccccCCccc-CCCCCccccccCCcccEEEEccc--ccccccCCceEEEEEee
Q 042445           18 FHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAF-GNTPFVSMGVFGSIVPLLTLGSI--SKRGIVPGLRLGWLVTS   94 (246)
Q Consensus        18 NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~-~~~~~~~~~~~~~~~~~i~~~s~--sK~~~~~g~r~G~i~~~   94 (246)
                      +..|....   ++++.++|+++|+.||+|.+++.+.. .+..   +..++    .+.+.||  +|.++..|  -|.+++.
T Consensus       119 ~~~G~~~d---~~~i~~~~~~~~i~vIED~a~a~g~~~~~~~---~G~~g----d~~~fSf~~~K~l~tge--GG~i~tn  186 (374)
T d1o69a_         119 HLYGNAAK---MDEIVEICKENDIVLIEDAAEALGSFYKNKA---LGTFG----EFGVYSYNGNKIITTSG--GGMLIGK  186 (374)
T ss_dssp             CGGGCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEETTEE---TTSSS----SEEEEECCTTSSSCCSS--CEEEEES
T ss_pred             ccccchhh---hHHHHHHhhccCcchhhhhhhhhcceECCee---cCCCC----ceEEEeccCcccccccc--ceeehhh
Confidence            55666544   89999999999999999999986542 3321   11222    2445555  58876554  3777776


Q ss_pred             CCCCCcchhhHHHHHHHHhhh---------------cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc
Q 042445           95 DPNGILQDSGIVDSIKIFLNI---------------SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKE  159 (246)
Q Consensus        95 ~~~~~~~~~~~~~~l~~~~~~---------------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~  159 (246)
                      +.       ++.++++.....               .+.++.+..+.+..-|.     .+.+..+.-++.++.+.+.|.+
T Consensus       187 n~-------~~~~~~~~~~~~g~~~~~~~~~~~~G~N~rm~ei~Aaig~~qL~-----~l~~~i~~r~~i~~~y~~~L~~  254 (374)
T d1o69a_         187 NK-------EKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQME-----VLEQRVLKKREIYEWYKEFLGE  254 (374)
T ss_dssp             CH-------HHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHT-----THHHHHHHHHHHHHHHHHHHTT
T ss_pred             hH-------HHHHhhccccccccccccccccccCCccccccchhhhhhHHHHh-----hhhhhcchhHHHHHHHHhhccc
Confidence            64       777777665321               11344444444444443     2333334444555666667765


Q ss_pred             CCCCccccCC---CCceEEEEEec--cccc-------------cCCCChHHHHHHHHHhcCeEEecCCCcC-------C-
Q 042445          160 IPCITCPKKP---EGSMFVMVKLN--YSLL-------------EGINSDMEFALKLAKEESVIVLPGITVG-------L-  213 (246)
Q Consensus       160 ~~~~~~~~~~---~~g~~~~~~~~--~~~~-------------~~~~~~~~~~~~ll~~~gi~v~pg~~f~-------~-  213 (246)
                      ...+.. ..+   ...++..+-+.  ....             .......+.+...|+++||.+++....-       . 
T Consensus       255 ~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~gI~~r~~y~pl~~~~~~~~~  333 (374)
T d1o69a_         255 YFSFLD-ELENSRSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGA  333 (374)
T ss_dssp             TEECCC-CCTTEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTC
T ss_pred             cccccc-cccCCCCChhheeeeeccccccccccccccccchhhccchhhHHHHHHHHHHCCCCEEEeCcchhhChhhhcC
Confidence            322211 011   11122222121  1100             0011245556778899999987754210       0 


Q ss_pred             ------------CCeEEEEeec--ChHHHHHHHHHHHHHHH
Q 042445          214 ------------KDWLRITFAV--EPSALENGLGRMKAFYD  240 (246)
Q Consensus       214 ------------~~~iRls~~~--~~~~l~~~~~~l~~~~~  240 (246)
                                  ++.+.+-+..  ++++++..++.|.++++
T Consensus       334 ~~~~~pna~~~~~~~i~LP~~~~lt~~di~~I~~~I~~~lk  374 (374)
T d1o69a_         334 KAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKSIK  374 (374)
T ss_dssp             EEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHhCEEECcCCCCCCHHHHHHHHHHHHHHHC
Confidence                        2334443333  88999999999988763

>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase (decarboxylating) subunit 1
species: Thermus thermophilus [TaxId: 274]

Probab=97.99  E-value=0.00032  Score=57.52  Aligned_cols=196  Identities=18%  Similarity=0.141  Sum_probs=111.6

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcc---c--ccccccCCc
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGS---I--SKRGIVPGL   86 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s---~--sK~~~~~g~   86 (246)
                      ++.+| |=.|.+   ++++++.+++++.|.+++.|-.-  .....  ..+...++-+   |++++   |  ...||+|| 
T Consensus       201 mi~~P-nt~G~~---ed~~~i~~~~h~~G~l~~~~ad~--~al~~--l~~Pg~~GaD---i~~g~~q~fg~p~g~GGP~-  268 (437)
T d1wyua1         201 VVQNP-NFLGAL---EDLGPFAEAAHGAGALFVAVADP--LSLGV--LKPPGAYGAD---IAVGDGQSLGLPMGFGGPH-  268 (437)
T ss_dssp             EEESS-CTTSBC---CCHHHHHHHHHHTTCEEEEECCT--TGGGT--BCCHHHHTCS---EEEEECTTTTCCCGGGCSC-
T ss_pred             EEccc-cccccc---cchHHHHHHhhhccceEEeeech--hhhhc--cccccccccc---eEeeccceeccccCCCcCc-
Confidence            88999 888987   35899999999999987766321  12111  1111111111   33333   1  13333344 


Q ss_pred             eEEEEEeeCCCCCcchhhHHHH----------------------------HHHHhh-hcCCC-CchHHHHHHHHHhhchH
Q 042445           87 RLGWLVTSDPNGILQDSGIVDS----------------------------IKIFLN-ISSDP-ATFIQGAVPQILEKTEE  136 (246)
Q Consensus        87 r~G~i~~~~~~~~~~~~~~~~~----------------------------l~~~~~-~~~~~-~~~~q~~~~~~l~~~~~  136 (246)
                       .|++.+.+        ++...                            +++... .+.+. +.+....+..++.....
T Consensus       269 -~G~~a~~~--------~l~r~lPgrivg~s~d~~G~~~~~l~lqtreqhIrRekatsnict~q~l~a~~a~~Y~~~lG~  339 (437)
T d1wyua1         269 -FGFLATKK--------AFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGP  339 (437)
T ss_dssp             -CEEEEECG--------GGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHH
T ss_pred             -cccccccc--------hhhccccccccccccccCCcccceeecccccccccccccccchhhHHHHHHHHHHHHhhhcCc
Confidence             56666655        33222                            222211 11122 22222233344444346


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCC-cC--C
Q 042445          137 EFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGIT-VG--L  213 (246)
Q Consensus       137 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~-f~--~  213 (246)
                      +-+++..+....++.++.+.|.+++|+.. ..+ +.+|--+.+..+      .+.+.+.+.|.++|+..  |.. |.  .
T Consensus       340 ~GL~~ia~~a~~~A~yl~~~L~~~~g~~~-~~~-~~~f~ef~v~~~------~~~~~i~k~L~d~G~~~--~~~~~~~~~  409 (437)
T d1wyua1         340 EGLREVALKSVEMAHKLHALLLEVPGVRP-FTP-KPFFNEFALALP------KDPEAVRRALAERGFHG--ATPVPREYG  409 (437)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSTTCEE-CSC-SSBCSEEEEECS------SCHHHHHHHHHHTTCCC--CEECCTTSC
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhhcCCeec-cCC-CCeeeEEEEECC------CCHHHHHHHHHhCCCCC--CcccccCCC
Confidence            77899999999999999999999888763 333 333322223322      14455666788999842  221 22  2


Q ss_pred             CCeEEEEeec--ChHHHHHHHHHHHHH
Q 042445          214 KDWLRITFAV--EPSALENGLGRMKAF  238 (246)
Q Consensus       214 ~~~iRls~~~--~~~~l~~~~~~l~~~  238 (246)
                      ++.+.+++.-  +.+++++.++.|++.
T Consensus       410 ~~~lli~~TE~~tkeeiD~~v~al~ei  436 (437)
T d1wyua1         410 ENLALFAATELHEEEDLLALREALKEV  436 (437)
T ss_dssp             SSEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred             CCeEEEecCCCCCHHHHHHHHHHHHHh
Confidence            6888999984  788888888888765

>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase subunit 2 (P-protein)
species: Thermus thermophilus [TaxId: 274]

Probab=97.88  E-value=0.00017  Score=59.82  Aligned_cols=206  Identities=14%  Similarity=-0.032  Sum_probs=116.9

Q ss_pred             cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccc----cCCce
Q 042445           12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGI----VPGLR   87 (246)
Q Consensus        12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~----~~g~r   87 (246)
                      ++.+| |+.|..-  +..+.+.+++++.+..+++|-+-......-..      .+...--+++...++.||    ..|--
T Consensus       207 ~v~~p-~~~g~~e--~~~~~~~~~~h~~g~~~~~~~~~~~~~~~l~~------p~~~g~div~vg~~q~~G~P~~~GGP~  277 (471)
T d1wyub1         207 MLTNP-NTLGLFE--RRILEISRLCKEAGVQLYYDGANLNAIMGWAR------PGDMGFDVVHLNLHKTFTVPHGGGGPG  277 (471)
T ss_dssp             EECSS-CTTSCCC--TTHHHHHHHHHHHTCEEEEEGGGGGGTTTTCC------HHHHTCSEEECCTTTTTCCCCTTSCCC
T ss_pred             eeccC-CCccccc--chhhhhHHHHHhccccccccccchhhhhhccc------cCccccccccccccccccccccccccc
Confidence            78888 7777653  35778888889999877777543322211000      010111122233334332    23334


Q ss_pred             EEEEEeeCCCCCcchhhHHHHHHHH-------------------hhhcCCCC-chHHHHHHHHHhhchHHHHHHHHHHHH
Q 042445           88 LGWLVTSDPNGILQDSGIVDSIKIF-------------------LNISSDPA-TFIQGAVPQILEKTEEEFFSKIIDILR  147 (246)
Q Consensus        88 ~G~i~~~~~~~~~~~~~~~~~l~~~-------------------~~~~~~~~-~~~q~~~~~~l~~~~~~~~~~~~~~~~  147 (246)
                      +|++.+.+        +++..+...                   .....+.| .+...++..++.....+-+++..+...
T Consensus       278 ~G~~a~~~--------~~~R~~PGRiV~~~~~~~~~~~~REqhIrRe~actnqaL~al~A~vYlsllG~~GL~elA~~~~  349 (471)
T d1wyub1         278 SGPVGVKA--------HLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAV  349 (471)
T ss_dssp             CCCEEECG--------GGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccceeehh--------hhhccCCCceecCCCccccccCCCcccccchhhhhhhHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence            77787777        554443210                   00111222 233334444565545788999999999


Q ss_pred             HHHHHHHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeec--
Q 042445          148 ETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAV--  223 (246)
Q Consensus       148 ~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~--  223 (246)
                      .+..++.+.|+. +|+.. . ..+.+|--+.+....  ++  +...+.+.|.++|+.- |..+|+.  ++.+-++++-  
T Consensus       350 ~~A~Yla~~L~~-~G~~~-~-~~~~ff~EFvv~~~~--~~--~~~~i~k~L~~~G~~~-~~~~~p~~~~~~llv~vTE~~  421 (471)
T d1wyub1         350 LNARYLKELLKE-KGYRV-P-YDGPSMHEFVAQPPE--GF--RALDLAKGLLELGFHP-PTVYFPLIVKEALMVEPTETE  421 (471)
T ss_dssp             HHHHHHHHHHHH-TTCBC-S-SCSSCCSCEEEBCST--TC--CHHHHHHHHHHTTCCC-CEESCSTTSTTCEEECCCTTS
T ss_pred             HHHHHHHHHHhh-cCcee-c-cCcceeeEEeecCCC--CC--CHHHHHHHHHHcCCCC-CcccCcCCCCCeEEEecCCCC
Confidence            999999999976 57763 2 333333222232211  11  3344455566788843 3334442  6788888883  


Q ss_pred             ChHHHHHHHHHHHHHHHHH
Q 042445          224 EPSALENGLGRMKAFYDRH  242 (246)
Q Consensus       224 ~~~~l~~~~~~l~~~~~~~  242 (246)
                      +.++++..++.|++.+++.
T Consensus       422 tkedID~lv~aL~~i~~e~  440 (471)
T d1wyub1         422 AKETLEAFAEAMGALLKKP  440 (471)
T ss_dssp             CHHHHHHHHHHHHHHHTSC
T ss_pred             CHHHHHHHHHHHHHHHHhh
Confidence            8889999999999888754