Citrus Sinensis ID: 042458

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------65
MSPPAVNLLIQDRHVVLDNGILEVTFSYPGGIVTGIRYNDIDNLLEVLNDELNRGYWDLVWNAPGSTGTRGIFDVIQGTSFNVIVENEDQVEISFTRTWDSSLEGKLVPLNIDKRFVMLRGSSGFYTYSIYEHLEEWPGFNLGETRIAFKLRKDKFHYMAIADNRQRYMPLPDDRVPPRGQPLAYPEAVLLVNPVEPDFKGEVDDKYQYSCDNKDINVHGWICTDPPVGFWHITPSAEFRTGGPQKQNLTSHVGPTTLSVFVSAHYSGEDLVPKFNAGEAWKKVFGPVFVYCNSAFDGDDPLSLWDDAKMQMSVETESWPYSFPASDDFPKSDQRGNVSGRLLVQDEYISDDYISASGAYVGLAPPGDAGSWQRECKDYQFWTSADEDGYFSITAVRAGDYNLYAWVPGFIGDYRYDVVVNITPGFDIDMGDLVYEPPRNGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYLDQPDRFRQYGLWERYAELYPDGDLVYTVGSSDYTKDWFFVQVTRKKDNNTYQGSTWQIKFELDDVNQSSTYKLRVAIASANLSELQVRINDPSTNRPLFSSGLIGRDNSIARHGIHGLYWLFNVDVPGARLVSGDNTIFFIQPRSTSPFQGIMYDYIRFEGPSDTTSKKETSRLLEK
cccccEEEEEEccEEEEEccEEEEEEEcccEEEEEEEEccccccccccccccccccEEEEEccccccccccEEEEEccEEEEEEEEcccEEEEEEEEEcccccccccccccEEEEEEEEccccEEEEEEEEEccccccccccccEEEEEEEcccccccEEEEcccccccccccccccccccccccccEEEEccccccccccEEEccEEEEEEcccccEEEEEEccccEEEEEEccccccccccccEEcccccccccEEEEEEEcccccccEEEccccccccccccccEEEEEccccccccccccHHHHHHHHcccccccccccccccccccccccEEEEEEEEEEccccccccccccccEEEEccccccccccccccccEEEEEEcccccEEEccEEccEEEEEEEEccEEEEEEEEEEEEEccccEEEccccEEEccccccccEEEcccccccccccccccccccccccccccccHHHHcHHHHHHHcccccccEEEEEccccccccccEEEEEEEcccccccccEEEEEEEcccccccccEEEEEEEEcccccccEEEEcccccccccccccccccccEEEEcEEEEEEEEEEEEEEcccEEEcccEEEEEEEcccccccEEEEEEEEEEccccccccccccccccc
cccccEEEEEcccEEEEEccEEEEEEEccccEEEEEEEccccccccccccccccccEEEEEcccccccccccEEEEcccEEEEEEEcccEEEEEEEcccccccccccccEcEEEEEEEEcccccEEEEEEEcccccccccccccEEEEEEcccccccEEEEccccccccccccccccccccEEEcccEEEEcccccccccccEcccEEEccccccccEEEEEEccccEEEEEEEcccccccccccHHHcHccccccEEEEEEcccccccccccccccccccccccccEEEEEccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEEEcccccccccccccccEEEEEcccccccEEEEccccEEEEEEccccEEEEccccccEEEEEEEEcccccEEEEccEEEEEcccEEEcccEEEEccccccEEEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccEEEEEccccccccccEEEEEEEccccccccccEEEEEEccccccccccEEEEEEEHHHcccccEEEEcccccccccccccccccccEEEccEEccEEEEEEEEcHHHHEccccEEEEEEEcccccccEEEEEEEEEEccccccccccccEEccc
msppavnllIQDRHVVLdngilevtfsypggivtgirYNDIDNLLEVLNDELNRGYwdlvwnapgstgtrgiFDVIQGTSFNVIVENEDQVEISFtrtwdsslegklvplniDKRFVMlrgssgfytYSIYEHleewpgfnlgeTRIAFKLRKDKFHYMAIADnrqrymplpddrvpprgqplaypeavllvnpvepdfkgevddkyqyscdnkdinvhgwictdppvgfwhitpsaefrtggpqkqnltshvgpttLSVFVSAhysgedlvpkfnageawkKVFGPVFVycnsafdgddplslwddaKMQMsveteswpysfpasddfpksdqrgnvsgrllvqdeyisddyisasgayvglappgdagswqreckdyqfwtsadedgyfSITAvragdynlyawvpgfigdyryDVVVNitpgfdidmgdlvyepprngptlweigipdrsaaefyvpdpnpkyinklyldqpdrfrqYGLWERYaelypdgdlvytvgssdytkdWFFVQVTrkkdnntyqgsTWQIKFElddvnqssTYKLRVAIASANLSELQvrindpstnrplfssgligrdnsiarhgihglywlfnvdvpgarlvsgdntiffiqprstspfqgimydyirfegpsdttskkETSRLLEK
MSPPAVNLLIQDRHVVLDNGILEVTFSYPGGIVTGIRYNDIDNLLEVLNDELNRGYWDLVWNAPGSTGTRGIFDVIQGTSFNVIVENEDQVEISftrtwdsslegklvplnidkRFVMLRGSSGFYTYSIYEHLEEWPGFNLGETRIAFKLRKDKFHYMAIADNRQRYMPLPDDRVPPRGQPLAYPEAVLLVNPVEPDFKGEVDDKYQYSCDNKDINVHGWICTDPPVGFWHITPSAEFRTGGPQKQNLTSHVGPTTLSVFVSAHYSGEDLVPKFNAGEAWKKVFGPVFVYCNSAFDGDDPLSLWDDAKMQMSVETESWPYSFPASDDFPKSDQRGNVSGRLLVQDEYISDDYISASGAYVGLAPPGDAGSWQRECKDYQFWTSADEDGYFSITAVRAGDYNLYAWVPGFIGDYRYDVVVNITPGFDIDMGDLVYEPPRNGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYLDQPDRFRQYGLWERYAELYPDGDLVYTVGSSDYTKDWFFVQVTrkkdnntyqgstWQIKFELDDVNQSSTYKLRVAIASANLSELQVRINDPSTNRPLFSSGLIGRDNSIARHGIHGLYWLFNVDVPGARLVSGDNTIFFiqprstspfqGIMYDYIRfegpsdttskketsrllek
MSPPAVNLLIQDRHVVLDNGILEVTFSYPGGIVTGIRYndidnllevlndelnRGYWDLVWNAPGSTGTRGIFDVIQGTSFNVIVENEDQVEISFTRTWDSSLEGKLVPLNIDKRFVMLRGSSGFYTYSIYEHLEEWPGFNLGETRIAFKLRKDKFHYMAIADNRQRYMPLPDDRVPPRGQPLAYPEAVLLVNPVEPDFKGEVDDKYQYSCDNKDINVHGWICTDPPVGFWHITPSAEFRTGGPQKQNLTSHVGPTTLSVFVSAHYSGEDLVPKFNAGEAWKKVFGPVFVYCNSAFDGDDPLSLWDDAKMQMSVETESWPYSFPASDDFPKSDQRGNVSGRLLVQDEYISDDYISASGAYVGLAPPGDAGSWQRECKDYQFWTSADEDGYFSITAVRAGDYNLYAWVPGFIGDYRYDVVVNITPGFDIDMGDLVYEPPRNGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYLDQPDRFRQYGLWERYAELYPDGDLVYTVGSSDYTKDWFFVQVTRKKDNNTYQGSTWQIKFELDDVNQSSTYKLRVAIASANLSELQVRINDPSTNRPLFSSGLIGRDNSIARHGIHGLYWLFNVDVPGARLVSGDNTIFFIQPRSTSPFQGIMYDYIRFEGPSDTTSKKETSRLLEK
*****VNLLIQDRHVVLDNGILEVTFSYPGGIVTGIRYNDIDNLLEVLNDELNRGYWDLVWNAPGSTGTRGIFDVIQGTSFNVIVENEDQVEISFTRTWDSSLEGKLVPLNIDKRFVMLRGSSGFYTYSIYEHLEEWPGFNLGETRIAFKLRKDKFHYMAIADNRQRYM*************LAYPEAVLLVNPVEPDFKGEVDDKYQYSCDNKDINVHGWICTDPPVGFWHITPSAEFR*********TSHVGPTTLSVFVSAHYSGEDLVPKFNAGEAWKKVFGPVFVYCNSAFDGDDPLSLWDDAK******************************GRLLVQDEYISDDYISASGAYVGLAPPGDAGSWQRECKDYQFWTSADEDGYFSITAVRAGDYNLYAWVPGFIGDYRYDVVVNITPGFDIDMGDLVYEPPRNGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYLDQPDRFRQYGLWERYAELYPDGDLVYTVGSSDYTKDWFFVQVTRKKDNNTYQGSTWQIKFELDDVNQSSTYKLRVAIASANLSELQVRIN*****RPLFSSGLIGRDNSIARHGIHGLYWLFNVDVPGARLVSGDNTIFFIQPRSTSPFQGIMYDYIRF******************
****AVN*LIQDRHVVLDNGILEVTFSYPGGIVTGIRYNDIDNLLEVLNDELNRGYWDLVWNAPGSTGTRGIFDVIQGTSFNVIVENEDQVEISFTRTWDSSLEGKLVPLNIDKRFVMLRGSSGFYTYSIYEHLEEWPGFNLGETRIAFKLRKDKFHYMAIADNRQRYMPLPDDRVPPRGQPLAYPEAVLLVNPVEPDFKGEVDDKYQYSCDNKDINVHGWICTDPPVGFWHITPSAEFRTGGPQKQNLTSHVGPTTLSVFVSAHYSGEDLVPKFNAGEAWKKVFGPVFVYCNSAFDGDDPLSLWDDAKMQMSVETESWPYSFPASDDFPKSDQRGNVSGRLLVQDEYISDDYISASGAYVGLAPPGDAGSWQRECKDYQFWTSADEDGYFSITAVRAGDYNLYAWVPGFIGDYRYDVVVNITPGFDIDMGDLVYEPPRNGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYLDQPDRFRQYGLWERYAELYPDGDLVYTVGSSDYTKDWFFVQVTRKKDNNTYQGSTWQIKFELDDVNQSSTYKLRVAIASANLSELQVRINDPSTNRPLFSSGLIGRDNSIARHGIHGLYWLFNVDVPGARLVSGDNTIFFIQPRSTSPFQGIMYDYIRFEGP***************
MSPPAVNLLIQDRHVVLDNGILEVTFSYPGGIVTGIRYNDIDNLLEVLNDELNRGYWDLVWNAPGSTGTRGIFDVIQGTSFNVIVENEDQVEISFTRTWDSSLEGKLVPLNIDKRFVMLRGSSGFYTYSIYEHLEEWPGFNLGETRIAFKLRKDKFHYMAIADNRQRYMPLPDDRVPPRGQPLAYPEAVLLVNPVEPDFKGEVDDKYQYSCDNKDINVHGWICTDPPVGFWHITPSAEFRTGGPQKQNLTSHVGPTTLSVFVSAHYSGEDLVPKFNAGEAWKKVFGPVFVYCNSAFDGDDPLSLWDDAKMQMSVETESWPYSFPASDDFPKSDQRGNVSGRLLVQDEYISDDYISASGAYVGLAPPGDAGSWQRECKDYQFWTSADEDGYFSITAVRAGDYNLYAWVPGFIGDYRYDVVVNITPGFDIDMGDLVYEPPRNGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYLDQPDRFRQYGLWERYAELYPDGDLVYTVGSSDYTKDWFFVQVTRKKDNNTYQGSTWQIKFELDDVNQSSTYKLRVAIASANLSELQVRINDPSTNRPLFSSGLIGRDNSIARHGIHGLYWLFNVDVPGARLVSGDNTIFFIQPRSTSPFQGIMYDYIRFEGPS**************
***PAVNLLIQDRHVVLDNGILEVTFSYPGGIVTGIRYNDIDNLLEVLNDELNRGYWDLVWNAPGSTGTRGIFDVIQGTSFNVIVENEDQVEISFTRTWDSSLEGKLVPLNIDKRFVMLRGSSGFYTYSIYEHLEEWPGFNLGETRIAFKLRKDKFHYMAIADNRQRYMPLPDDRVPPRGQPLAYPEAVLLVNPVEPDFKGEVDDKYQYSCDNKDINVHGWICTDPPVGFWHITPSAEFRTGGPQKQNLTSHVGPTTLSVFVSAHYSGEDLVPKFNAGEAWKKVFGPVFVYCNSAFDGDDPLSLWDDAKMQMSVETESWPYSFPASDDFPKSDQRGNVSGRLLVQDEYISDDYISASGAYVGLAPPGDAGSWQRECKDYQFWTSADEDGYFSITAVRAGDYNLYAWVPGFIGDYRYDVVVNITPGFDIDMGDLVYEPPRNGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYLDQPDRFRQYGLWERYAELYPDGDLVYTVGSSDYTKDWFFVQVTRKKDNNTYQGSTWQIKFELDDVNQSSTYKLRVAIASANLSELQVRINDPSTNRPLFSSGLIGRDNSIARHGIHGLYWLFNVDVPGARLVSGDNTIFFIQPRSTSPFQGIMYDYIRFEGPS**************
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MSPPAVNLLIQDRHVVLDNGILEVTFSYPGGIVTGIRYNDIDNLLEVLNDELNRGYWDLVWNAPGSTGTRGIFDVIQGTSFNVIVENEDQVEISFTRTWDSSLEGKLVPLNIDKRFVMLRGSSGFYTYSIYEHLEEWPGFNLGETRIAFKLRKDKFHYMAIADNRQRYMPLPDDRVPPRGQPLAYPEAVLLVNPVEPDFKGEVDDKYQYSCDNKDINVHGWICTDPPVGFWHITPSAEFRTGGPQKQNLTSHVGPTTLSVFVSAHYSGEDLVPKFNAGEAWKKVFGPVFVYCNSAFDGDDPLSLWDDAKMQMSVETESWPYSFPASDDFPKSDQRGNVSGRLLVQDEYISDDYISASGAYVGLAPPGDAGSWQRECKDYQFWTSADEDGYFSITAVRAGDYNLYAWVPGFIGDYRYDVVVNITPGFDIDMGDLVYEPPRNGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYLDQPDRFRQYGLWERYAELYPDGDLVYTVGSSDYTKDWFFVQVTRKKDNNTYQGSTWQIKFELDDVNQSSTYKLRVAIASANLSELQVRINDPSTNRPLFSSGLIGRDNSIARHGIHGLYWLFNVDVPGARLVSGDNTIFFIQPRSTSPFQGIMYDYIRFEGPSDTTSKKETSRLLEK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query649 2.2.26 [Sep-21-2011]
Q8RJP2578 Rhamnogalacturonate lyase yes no 0.796 0.894 0.245 7e-24
Q5AZ85660 Rhamnogalacturonate lyase yes no 0.887 0.872 0.238 1e-15
Q0C7K7660 Probable rhamnogalacturon N/A no 0.875 0.860 0.238 1e-14
B8N5T6663 Probable rhamnogalacturon N/A no 0.730 0.714 0.230 5e-14
A5ABH4706 Probable rhamnogalacturon yes no 0.707 0.650 0.237 4e-13
Q4WR79658 Probable rhamnogalacturon no no 0.724 0.714 0.235 6e-09
B0XPA2658 Probable rhamnogalacturon N/A no 0.724 0.714 0.235 6e-09
Q5B5P1 1041 Probable rhamnogalacturon no no 0.622 0.388 0.234 1e-08
A1D144658 Probable rhamnogalacturon N/A no 0.727 0.717 0.234 3e-08
Q2U5P7695 Probable rhamnogalacturon no no 0.630 0.588 0.229 2e-07
>sp|Q8RJP2|RHIE_DICD3 Rhamnogalacturonate lyase OS=Dickeya dadantii (strain 3937) GN=rhiE PE=1 SV=1 Back     alignment and function desciption
 Score =  112 bits (281), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 152/619 (24%), Positives = 239/619 (38%), Gaps = 102/619 (16%)

Query: 5   AVNLLIQDRHVVLDNGILEVTFSYPGGI--VTGIRYNDIDNLLEVLND-ELNRGYWDLVW 61
           AV L +   +  LDNG+L+V F   G    V     N I  L     D + NR ++   +
Sbjct: 28  AVKLTLDGMNSTLDNGLLKVRFGADGSAKEVWKGGTNLISRLSGAARDPDKNRSFYLDYY 87

Query: 62  NAPGSTGTRGIFDVIQGTSFNVIVENEDQVEISFTRTWDSSLEGKLVPLNIDKRFVMLRG 121
           +        G+ + +      VI +  DQV +++       ++ +   L ++   +M R 
Sbjct: 88  SG-------GVNEFVP-ERLEVIKQTPDQVHLAY-------IDDQNGKLRLEYHLIMTRD 132

Query: 122 SSGFYTYSIYEHLEEWPGFNLGETRIAFKLRKDKFHYMAIADNRQRYMPLPDDRVPPRGQ 181
            SG Y+Y +  +    P   + E R  ++    +   +    N  R           RG 
Sbjct: 133 VSGLYSYVVAANTGSAP-VTVSELRNVYRFDATRLDTLF---NSIR-----------RGT 177

Query: 182 PLAYPEAVLLVNPVEPDFK---GEVDDKYQYSCDNKDINVHGWICTDPPVGFWHITPSAE 238
           PL Y E   L    +  ++   G V  KY ++   ++     W       G W +  S E
Sbjct: 178 PLLYDELEQLPKVQDETWRLPDGSVYSKYDFAGYQRESRY--WGVMGNGYGAWMVPASGE 235

Query: 239 FRTGGPQKQNLTSHVGPTTLSVFVSAHYSGEDLVPKFNAGEAWKKVFGPVFVYCNSAFDG 298
           + +G   KQ L  H     L+    +H+   D+V    A   ++K++GP  +Y N   D 
Sbjct: 236 YYSGDALKQELLVHQDAIILNYLTGSHFGTPDMV----AQPGFEKLYGPWLLYINQGNDR 291

Query: 299 DDPLSLWDDAKMQMSVETESWPYSFPASDDFPKSDQRGNVSGRLLVQDEYISDDYISASG 358
           +    L  D   +   E  SWPY +     +P+  QR  VSGRL  +          A  
Sbjct: 292 E----LVADVSRRAEHERASWPYRWLDDARYPR--QRATVSGRLRTE----------APH 335

Query: 359 AYVGLAPPGDAGSWQRECKDYQFWTSADEDGYFSITAVRAGDYNLYAWVPG--FIGDYRY 416
           A V L     A ++  +   Y F    + DG FS++ V  G+Y L A+  G   IG    
Sbjct: 336 ATVVLN--SSAENFDIQTTGYLFSARTNRDGRFSLSNVPPGEYRLSAYADGGTQIGLLAQ 393

Query: 417 DVVVNITPGFDIDMGDLVYEPPRNGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYLDQPD 476
             V     G    +G +    P   P  W IG  DR A EF             + D+P 
Sbjct: 394 QTVR--VEGKKTRLGQIDARQP--APLAWAIGQADRRADEFR------------FGDKPR 437

Query: 477 RFRQYGLWERYAELYPDGDLVYTVGSSDYTKDWFFVQVTRKKDNNTYQGSTWQIKFELDD 536
           ++R    W+         DL + +G S   KDW++ Q          Q  +W I F    
Sbjct: 438 QYR----WQTEVP----ADLTFEIGKSRERKDWYYAQT---------QPGSWHILFNTRT 480

Query: 537 VNQSSTYKLRVAIASANLSELQVRINDP----STNRPLFSSGLIGRDNSIARHGIH-GLY 591
             Q   Y L +AIA+A+ + +    + P      N  L ++     D SI R  +  G Y
Sbjct: 481 PEQP--YTLNIAIAAASNNGMTTPASSPQLAVKLNGQLLTTLKYDNDKSIYRGAMQSGRY 538

Query: 592 WLFNVDVPGARLVSGDNTI 610
              ++ +P   L  G N I
Sbjct: 539 HEAHIPLPAGALQQGGNRI 557
Degrades the rhamnogalacturonan I (RG-I) backbone of pectin. Is required for the full virulence of E.chrysanthemi strain 3937 as it is involved in rotting of plant tissue.
Dickeya dadantii (strain 3937) (taxid: 198628)
EC: 4EC: .EC: 2EC: .EC: 2EC: .EC: -
>sp|Q5AZ85|RGLB_EMENI Rhamnogalacturonate lyase B OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rglB PE=2 SV=2 Back     alignment and function description
>sp|Q0C7K7|RGLB_ASPTN Probable rhamnogalacturonate lyase B OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=rglB PE=3 SV=1 Back     alignment and function description
>sp|B8N5T6|RGLB_ASPFN Probable rhamnogalacturonate lyase B OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) GN=rglB PE=3 SV=1 Back     alignment and function description
>sp|A5ABH4|RGLB_ASPNC Probable rhamnogalacturonate lyase B OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=rglB PE=3 SV=1 Back     alignment and function description
>sp|Q4WR79|RGLB_ASPFU Probable rhamnogalacturonate lyase B OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rglB PE=3 SV=1 Back     alignment and function description
>sp|B0XPA2|RGLB_ASPFC Probable rhamnogalacturonate lyase B OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) GN=rglB PE=3 SV=1 Back     alignment and function description
>sp|Q5B5P1|RGLC_EMENI Probable rhamnogalacturonate lyase C OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rglC PE=3 SV=1 Back     alignment and function description
>sp|A1D144|RGLB_NEOFI Probable rhamnogalacturonate lyase B OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=rglB PE=3 SV=1 Back     alignment and function description
>sp|Q2U5P7|RGLC_ASPOR Probable rhamnogalacturonate lyase C OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=rglC PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query649
356515685643 PREDICTED: probable rhamnogalacturonate 0.989 0.998 0.799 0.0
356510088643 PREDICTED: rhamnogalacturonate lyase B-l 0.989 0.998 0.789 0.0
255572842642 lyase, putative [Ricinus communis] gi|22 0.986 0.996 0.786 0.0
359492972643 PREDICTED: probable rhamnogalacturonate 0.983 0.992 0.791 0.0
357466849651 Rhamnogalacturonate lyase [Medicago trun 0.983 0.980 0.774 0.0
302142095656 unnamed protein product [Vitis vinifera] 0.979 0.969 0.777 0.0
224063361626 predicted protein [Populus trichocarpa] 0.944 0.979 0.810 0.0
255572850639 lyase, putative [Ricinus communis] gi|22 0.984 1.0 0.740 0.0
449508935641 PREDICTED: rhamnogalacturonate lyase B-l 0.969 0.981 0.742 0.0
297849304633 hypothetical protein ARALYDRAFT_334271 [ 0.972 0.996 0.750 0.0
>gi|356515685|ref|XP_003526529.1| PREDICTED: probable rhamnogalacturonate lyase B-like [Glycine max] Back     alignment and taxonomy information
 Score = 1099 bits (2842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 513/642 (79%), Positives = 574/642 (89%)

Query: 1   MSPPAVNLLIQDRHVVLDNGILEVTFSYPGGIVTGIRYNDIDNLLEVLNDELNRGYWDLV 60
           MS P V L IQD HVV++NGIL+VT S PGGIVTGI+YNDIDNLLEVLNDE NRGYWDLV
Sbjct: 1   MSSPGVQLTIQDNHVVMENGILKVTLSNPGGIVTGIQYNDIDNLLEVLNDESNRGYWDLV 60

Query: 61  WNAPGSTGTRGIFDVIQGTSFNVIVENEDQVEISFTRTWDSSLEGKLVPLNIDKRFVMLR 120
           W++P STGT G FDVI+GT+F V+VENEDQVE+SFTRTWD S EGKLVPLNIDKRFVMLR
Sbjct: 61  WSSPTSTGTSGTFDVIKGTTFKVVVENEDQVELSFTRTWDVSREGKLVPLNIDKRFVMLR 120

Query: 121 GSSGFYTYSIYEHLEEWPGFNLGETRIAFKLRKDKFHYMAIADNRQRYMPLPDDRVPPRG 180
           GSSGFY+Y+IYEHLEEWP FNL ETRIAFKLRKDKFHYMA+ADNRQR MPLPDDR+PP+G
Sbjct: 121 GSSGFYSYAIYEHLEEWPAFNLDETRIAFKLRKDKFHYMAMADNRQRNMPLPDDRLPPKG 180

Query: 181 QPLAYPEAVLLVNPVEPDFKGEVDDKYQYSCDNKDINVHGWICTDPPVGFWHITPSAEFR 240
           + LAYPEAVLLVNP+EP+ KGEVDDKYQYSCDNKD  VHGWIC DP VGFW ITPS EFR
Sbjct: 181 KALAYPEAVLLVNPIEPELKGEVDDKYQYSCDNKDSQVHGWICMDPAVGFWLITPSNEFR 240

Query: 241 TGGPQKQNLTSHVGPTTLSVFVSAHYSGEDLVPKFNAGEAWKKVFGPVFVYCNSAFDGDD 300
           +GGP KQNLTSHVGPTTL+VF+SAHYSGEDLVPKFN+GEAWKKVFGPVF+Y NS +DG D
Sbjct: 241 SGGPLKQNLTSHVGPTTLAVFLSAHYSGEDLVPKFNSGEAWKKVFGPVFIYLNSPYDGTD 300

Query: 301 PLSLWDDAKMQMSVETESWPYSFPASDDFPKSDQRGNVSGRLLVQDEYISDDYISASGAY 360
           PL LW+DAK+QMSVE +SWPYSFP S+DF K D RGNVSGRLLV++ YI+DDY+SA GAY
Sbjct: 301 PLKLWEDAKLQMSVEVQSWPYSFPESEDFAKWDDRGNVSGRLLVRERYINDDYVSAKGAY 360

Query: 361 VGLAPPGDAGSWQRECKDYQFWTSADEDGYFSITAVRAGDYNLYAWVPGFIGDYRYDVVV 420
           VGLAPPGD GSWQRECK+YQFW  AD+DGYFS++ +RAGDYN+YAWVPGFIGDY+YDVV+
Sbjct: 361 VGLAPPGDVGSWQRECKNYQFWARADDDGYFSVSNIRAGDYNVYAWVPGFIGDYKYDVVI 420

Query: 421 NITPGFDIDMGDLVYEPPRNGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYLDQPDRFRQ 480
           NIT G DID+GDLVYEPPR+GPTLWEIGIPDRSAAEFYVPDPNPKYINKLY++ PD+FRQ
Sbjct: 421 NITEGCDIDLGDLVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYVNHPDKFRQ 480

Query: 481 YGLWERYAELYPDGDLVYTVGSSDYTKDWFFVQVTRKKDNNTYQGSTWQIKFELDDVNQS 540
           YGLWERYAELYPD DL+YT+G SDYTKDWFF QVTRKKD+NTYQG+TWQIKF+LD VN+S
Sbjct: 481 YGLWERYAELYPDKDLIYTIGVSDYTKDWFFAQVTRKKDDNTYQGTTWQIKFKLDSVNKS 540

Query: 541 STYKLRVAIASANLSELQVRINDPSTNRPLFSSGLIGRDNSIARHGIHGLYWLFNVDVPG 600
           S+YKLRVA+ASA LSELQVR+N+P   RPLFSSGLIGRDNSIARHGIHGLYWL+NV +PG
Sbjct: 541 SSYKLRVALASATLSELQVRVNNPKAPRPLFSSGLIGRDNSIARHGIHGLYWLYNVGIPG 600

Query: 601 ARLVSGDNTIFFIQPRSTSPFQGIMYDYIRFEGPSDTTSKKE 642
            +LV GDNTIF  Q R   PFQ IMYDYIR E P  ++  K+
Sbjct: 601 TQLVEGDNTIFLTQTRGNGPFQAIMYDYIRLEAPPSSSFNKK 642

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356510088|ref|XP_003523772.1| PREDICTED: rhamnogalacturonate lyase B-like [Glycine max] Back     alignment and taxonomy information
>gi|255572842|ref|XP_002527353.1| lyase, putative [Ricinus communis] gi|223533272|gb|EEF35025.1| lyase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359492972|ref|XP_002285626.2| PREDICTED: probable rhamnogalacturonate lyase B-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357466849|ref|XP_003603709.1| Rhamnogalacturonate lyase [Medicago truncatula] gi|355492757|gb|AES73960.1| Rhamnogalacturonate lyase [Medicago truncatula] Back     alignment and taxonomy information
>gi|302142095|emb|CBI19298.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224063361|ref|XP_002301112.1| predicted protein [Populus trichocarpa] gi|222842838|gb|EEE80385.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255572850|ref|XP_002527357.1| lyase, putative [Ricinus communis] gi|223533276|gb|EEF35029.1| lyase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449508935|ref|XP_004163448.1| PREDICTED: rhamnogalacturonate lyase B-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297849304|ref|XP_002892533.1| hypothetical protein ARALYDRAFT_334271 [Arabidopsis lyrata subsp. lyrata] gi|297338375|gb|EFH68792.1| hypothetical protein ARALYDRAFT_334271 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query649
TAIR|locus:2024427617 AT1G09890 [Arabidopsis thalian 0.947 0.996 0.732 4.7e-261
TAIR|locus:2024331675 AT1G09910 [Arabidopsis thalian 0.970 0.933 0.662 6.3e-243
TAIR|locus:2136007646 AT4G24430 [Arabidopsis thalian 0.970 0.975 0.634 1.9e-232
TAIR|locus:2024417631 AT1G09880 [Arabidopsis thalian 0.950 0.977 0.624 6.7e-223
TAIR|locus:2066040677 AT2G22620 [Arabidopsis thalian 0.947 0.908 0.576 2e-198
TAIR|locus:2121095667 AT4G38030 [Arabidopsis thalian 0.939 0.914 0.539 1.7e-187
TAIR|locus:2121090678 AT4G37950 [Arabidopsis thalian 0.959 0.918 0.540 1.7e-185
TAIR|locus:2200390248 AT1G65210 "AT1G65210" [Arabido 0.285 0.745 0.548 7.8e-62
ASPGD|ASPL0000007043660 rglB [Emericella nidulans (tax 0.796 0.783 0.247 2.6e-20
UNIPROTKB|Q5AZ85660 rglB "Rhamnogalacturonate lyas 0.796 0.783 0.247 2.6e-20
TAIR|locus:2024427 AT1G09890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2512 (889.3 bits), Expect = 4.7e-261, P = 4.7e-261
 Identities = 455/621 (73%), Positives = 521/621 (83%)

Query:    17 LDNGILEVTFSYPGGIVTGIRYXXXXXXXXXXXXXXXRGYWDLVWNAPGSTGTRGIFDVI 76
             +DNGI  VT S P GIVTGI Y               RGYWDLVW   G +GT G FDVI
Sbjct:     1 MDNGIARVTLSKPDGIVTGIEYNGIDNLLEVLNEEVNRGYWDLVW---GGSGTAGGFDVI 57

Query:    77 QGTSFNVIVENEDQVEISFTRTWDSSLEGKLVPLNIDKRFVMLRGSSGFYTYSIYEHLEE 136
             +G++F VIV+NE+Q+E+SFTR WD S EGK VPLNIDKRFVML GSSGFYTY+IYEHL+E
Sbjct:    58 KGSNFEVIVKNEEQIELSFTRKWDPSQEGKAVPLNIDKRFVMLSGSSGFYTYAIYEHLKE 117

Query:   137 WPGFNLGETRIAFKLRKDKFHYMAIADNRQRYMPLPDDRVPPRGQPLAYPEAVLLVNPVE 196
             WP F+L ETRIAFKLRK+KFHYMA+ D+RQR+MPLPDDR+P RGQ LAYPEAVLLVNP+E
Sbjct:   118 WPAFSLAETRIAFKLRKEKFHYMAVTDDRQRFMPLPDDRLPDRGQALAYPEAVLLVNPLE 177

Query:   197 PDFKGEVDDKYQYSCDNKDINVHGWICTDPP-VGFWHITPSAEFRTGGPQKQNLTSHVGP 255
               FKGEVDDKYQYSC+NKDI VHGWICT+ P VGFW ITPS E+RTGGPQKQNLTSHVGP
Sbjct:   178 SQFKGEVDDKYQYSCENKDITVHGWICTEQPSVGFWLITPSHEYRTGGPQKQNLTSHVGP 237

Query:   256 TTLSVFVSAHYSGEDLVPKFNAGEAWKKVFGPVFVYCNSAFDGD-DPLSLWDDAKMQMSV 314
             T L+VF+SAHY+GEDLVPKF+ GEAWKKVFGPVFVY NS+ D D DPL LW DAK QM+V
Sbjct:   238 TALAVFISAHYTGEDLVPKFSEGEAWKKVFGPVFVYLNSSTDDDNDPLWLWQDAKSQMNV 297

Query:   315 ETESWPYSFPASDDFPKSDQRGNVSGRLLVQDEYISDDYISASGAYVGLAPPGDAGSWQR 374
             E ESWPYSFPASDD+ K++QRGNV GRLLVQD Y+  D+I+A+  YVGLA PG AGSWQR
Sbjct:   298 EAESWPYSFPASDDYVKTEQRGNVVGRLLVQDRYVDKDFIAANRGYVGLAVPGAAGSWQR 357

Query:   375 ECKDYQFWTSADEDGYFSITAVRAGDYNLYAWVPGFIGDYRYDVVVNITPGFDIDMGDLV 434
             ECK+YQFWT  DE+G+F I+ +R G YNLYAW+PGFIGDY+YD V+ IT G  I + DLV
Sbjct:   358 ECKEYQFWTRTDEEGFFYISGIRPGQYNLYAWIPGFIGDYKYDDVITITSGCYIYVEDLV 417

Query:   435 YEPPRNGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYLDQPDRFRQYGLWERYAELYPDG 494
             Y+PPRNG TLWEIG PDRSAAEFYVPDPNPKYIN LY + PDRFRQYGLWERYAELYPD 
Sbjct:   418 YQPPRNGATLWEIGFPDRSAAEFYVPDPNPKYINNLYQNHPDRFRQYGLWERYAELYPDK 477

Query:   495 DLVYTVGSSDYTKDWFFVQVTRKKDNNTYQGSTWQIKFELDDVNQSSTYKLRVAIASANL 554
             DLVY VGSSDY KDWF+ QVTRKKDN TYQG+TWQIKFEL +++++ +Y LRVAIASA  
Sbjct:   478 DLVYVVGSSDYRKDWFYAQVTRKKDNKTYQGTTWQIKFELKNIDKNHSYTLRVAIASATF 537

Query:   555 SELQVRINDPSTNRPLFSSGLIGRDNSIARHGIHGLYWLFNVDVPGARLVSGDNTIFFIQ 614
             SELQ+R+N+ + + P+F+SGLIGRDNSIARHGIHGLYWLFNV+V G++L+ G+NT+F  Q
Sbjct:   538 SELQIRVNNANAS-PMFTSGLIGRDNSIARHGIHGLYWLFNVEVAGSKLLEGENTLFLTQ 596

Query:   615 PRSTSPFQGIMYDYIRFEGPS 635
             PRSTSPFQGIMYDYIRFE PS
Sbjct:   597 PRSTSPFQGIMYDYIRFEAPS 617
GO:0005576 "extracellular region" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0016829 "lyase activity" evidence=ISS
GO:0030246 "carbohydrate binding" evidence=IEA
TAIR|locus:2024331 AT1G09910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2136007 AT4G24430 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024417 AT1G09880 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2066040 AT2G22620 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121095 AT4G38030 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121090 AT4G37950 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200390 AT1G65210 "AT1G65210" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000007043 rglB [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|Q5AZ85 rglB "Rhamnogalacturonate lyase B" [Aspergillus nidulans FGSC A4 (taxid:227321)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00015069001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (643 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query649
pfam06045220 pfam06045, Rhamnogal_lyase, Rhamnogalacturonate ly 1e-105
cd10320265 cd10320, RGL4_N, N-terminal catalytic domain of rh 6e-75
cd10317161 cd10317, RGL4_C, C-terminal domain of rhamnogalact 4e-54
cd1031692 cd10316, RGL4_M, Middle domain of rhamnogalacturon 4e-32
pfam1362081 pfam13620, CarboxypepD_reg, Carboxypeptidase regul 0.001
>gnl|CDD|218870 pfam06045, Rhamnogal_lyase, Rhamnogalacturonate lyase family Back     alignment and domain information 
 Score =  316 bits (812), Expect = e-105
 Identities = 131/203 (64%), Positives = 156/203 (76%), Gaps = 4/203 (1%)

Query: 1   MSPPAVNLLIQDRHVVLDNGILEVTFSYPGGIVTGIRYNDIDNLLEVLNDELNRGYWDLV 60
           ++  +V+L + DRHVV+DNGI++VT S PGG +TGIRYN IDNLLE  + E NRGYWD+V
Sbjct: 22  LNGGSVSLHVDDRHVVVDNGIVQVTLSNPGGAITGIRYNGIDNLLEARDKEKNRGYWDVV 81

Query: 61  WNAPGSTGTRGIFDVIQGTSFNVIVENEDQVEISFTRTWDSSLEGKLVPLNIDKRFVMLR 120
           WN PG    + IFDVI GT F VI ++E+QVE+SF RTW        VPLNIDKR +MLR
Sbjct: 82  WNFPGV---KSIFDVIVGTEFEVITQDEEQVELSFIRTW-DPSRDNGVPLNIDKRLIMLR 137

Query: 121 GSSGFYTYSIYEHLEEWPGFNLGETRIAFKLRKDKFHYMAIADNRQRYMPLPDDRVPPRG 180
           G SGFY+Y+I+EHL  WP  NL ETR+ FKL KDKFHYMAI+D+RQR MP PDDR  PRG
Sbjct: 138 GVSGFYSYAIFEHLSGWPAVNLSETRLVFKLNKDKFHYMAISDDRQRIMPRPDDRDIPRG 197

Query: 181 QPLAYPEAVLLVNPVEPDFKGEV 203
            PLAYPEAVLLV+P EP F+GEV
Sbjct: 198 APLAYPEAVLLVDPQEPQFRGEV 220

Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. Length = 220
>gnl|CDD|199907 cd10320, RGL4_N, N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase Back     alignment and domain information
>gnl|CDD|199905 cd10317, RGL4_C, C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase Back     alignment and domain information
>gnl|CDD|199904 cd10316, RGL4_M, Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase Back     alignment and domain information
>gnl|CDD|222268 pfam13620, CarboxypepD_reg, Carboxypeptidase regulatory-like domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 649
PF06045203 Rhamnogal_lyase: Rhamnogalacturonate lyase family; 100.0
PF09284249 RhgB_N: Rhamnogalacturonase B, N-terminal; InterPr 100.0
PF14683167 CBM-like: Polysaccharide lyase family 4, domain II 100.0
PF1468695 fn3_3: Polysaccharide lyase family 4, domain II; P 99.85
PF1362082 CarboxypepD_reg: Carboxypeptidase regulatory-like 98.79
PF1371588 DUF4480: Domain of unknown function (DUF4480) 98.45
cd03863375 M14_CPD_II The second carboxypeptidase (CP)-like d 97.9
cd03864392 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, als 97.82
cd03865402 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (C 97.71
cd06245363 M14_CPD_III The third carboxypeptidase (CP)-like d 97.64
cd03868372 M14_CPD_I The first carboxypeptidase (CP)-like dom 97.51
cd03858374 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like sub 97.47
cd03867395 M14_CPZ Peptidase M14-like domain of carboxypeptid 97.13
cd03866376 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM 96.19
PF08400134 phage_tail_N: Prophage tail fibre N-terminal; Inte 95.45
PRK15036137 hydroxyisourate hydrolase; Provisional 94.81
PF0830871 PEGA: PEGA domain; InterPro: IPR013229 This domain 94.53
cd00421146 intradiol_dioxygenase Intradiol dioxygenases catal 93.49
PF03422125 CBM_6: Carbohydrate binding module (family 6); Int 93.17
cd03869405 M14_CPX_like Peptidase M14-like domain of carboxyp 92.83
PF09430123 DUF2012: Protein of unknown function (DUF2012); In 92.2
PF0573870 Cna_B: Cna protein B-type domain; InterPro: IPR008 92.06
KOG1948 1165 consensus Metalloproteinase-related collagenase pM 91.89
cd03463185 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4 91.68
cd03459158 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) 90.53
PF0721085 DUF1416: Protein of unknown function (DUF1416); In 90.04
COG3485226 PcaH Protocatechuate 3,4-dioxygenase beta subunit 89.09
TIGR02465246 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Memb 88.9
TIGR02423193 protocat_alph protocatechuate 3,4-dioxygenase, alp 88.23
cd03464220 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4- 87.76
PF00775183 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 Th 87.63
PF03170 605 BcsB: Bacterial cellulose synthase subunit; InterP 87.07
PF0749566 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This regi 86.76
TIGR02422220 protocat_beta protocatechuate 3,4-dioxygenase, bet 86.08
cd03458256 Catechol_intradiol_dioxygenases Catechol intradiol 85.92
cd03462247 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) 85.36
KOG1948 1165 consensus Metalloproteinase-related collagenase pM 84.98
smart00606129 CBD_IV Cellulose Binding Domain Type IV. 84.78
cd03460282 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyz 83.11
TIGR02439285 catechol_proteo catechol 1,2-dioxygenase, proteoba 82.83
PRK103401021 ebgA cryptic beta-D-galactosidase subunit alpha; R 82.79
TIGR02438281 catachol_actin catechol 1,2-dioxygenase, Actinobac 82.51
cd03461277 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) ca 81.07
>PF06045 Rhamnogal_lyase: Rhamnogalacturonate lyase family; InterPro: IPR010325 Rhamnogalacturonate lyase degrades the rhamnogalacturonan I (RG-I) backbone of pectin [] Back     alignment and domain information 
Probab=100.00  E-value=4.6e-58  Score=451.02  Aligned_cols=200  Identities=72%  Similarity=1.244  Sum_probs=195.0

Q ss_pred             CCCCceEEEEeCcEEEEECCeEEEEEeCCCeeEEEEEECCccchhhccccCCCcceeEEEecCCCCCCccceeeeeecce
Q 042458            1 MSPPAVNLLIQDRHVVLDNGILEVTFSYPGGIVTGIRYNDIDNLLEVLNDELNRGYWDLVWNAPGSTGTRGIFDVIQGTS   80 (649)
Q Consensus         1 ~~~~~v~l~~~g~~~vidNg~l~~tv~k~~G~itsi~y~G~enll~~~~~~~~~gY~d~~~~~~G~~~~~~~~~~~~gt~   80 (649)
                      ++.++|+|++++++|+||||+|+|||+||+|+||+|+|+|++||++..+++.++||||++|+.+|.   .++|+++.||+
T Consensus         4 ~~~~~V~L~~~~~~VvldNGiVqVtls~p~G~VtgIkYnGi~NLle~~n~e~nrGYwD~~W~~~G~---~~~~~~~~gt~   80 (203)
T PF06045_consen    4 SSSSGVTLTVQGRQVVLDNGIVQVTLSKPGGIVTGIKYNGIDNLLEVANKENNRGYWDLVWNEPGS---KGKFDRIKGTE   80 (203)
T ss_pred             ccCCCeEEEEcCCEEEEECCEEEEEEcCCCceEEEEEECCEehhhcccCcccCCceEEEecccCCc---cccccccCCcE
Confidence            367899999999999999999999999999999999999999999999999999999999999885   56899999999


Q ss_pred             EEEEEecCCEEEEEEEEeecCCCCCCcccceeeEEEEEecCCceEEEEEEeeccccCCCCCCcceEEEEecCCCCcccce
Q 042458           81 FNVIVENEDQVEISFTRTWDSSLEGKLVPLNIDKRFVMLRGSSGFYTYSIYEHLEEWPGFNLGETRIAFKLRKDKFHYMA  160 (649)
Q Consensus        81 ~~v~~~~~~~i~Vs~~~~~~~s~~g~~~~l~l~~~~v~r~G~sgiY~y~~~~~~~~~p~~~lge~R~v~Rl~~~~f~~~~  160 (649)
                      |+||++++++|||||+++|+||++++.+||+||+||||++|+||||+|+|++|+++||+++|+|+|+||||++++|++||
T Consensus        81 f~Vi~~te~qVevSF~r~w~~s~~~~~~plnIDkryVm~rG~SGfY~YAI~e~~~~~Pa~~l~q~R~vfKl~~d~F~yma  160 (203)
T PF06045_consen   81 FSVIEQTEEQVEVSFSRTWDPSLDGKSVPLNIDKRYVMLRGSSGFYSYAIFEHPAGWPAFDLGQTRIVFKLNKDKFHYMA  160 (203)
T ss_pred             EEEEEcCCCeEEEEEEcccCcCCCCCcceeEeeEEEEEecCCceEEEEEEEecCCCCCCcccceeEEEEECCccccceEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeccccccCCCCCCCCCCCCCcccccceEEeecCCCCCCCceE
Q 042458          161 IADNRQRYMPLPDDRVPPRGQPLAYPEAVLLVNPVEPDFKGEV  203 (649)
Q Consensus       161 ~~d~r~~~~P~~~d~~~~~g~~l~~~eav~l~~~~~~~~~G~~  203 (649)
                      ++|+||+.||+|+|+++++|++|+|||||+|++|.+|.++|||
T Consensus       161 i~d~rqr~mP~~~D~~~~~~~~l~y~eav~l~~p~~~~~~gev  203 (203)
T PF06045_consen  161 ISDDRQRIMPSPDDRDPARGQPLAYPEAVLLVNPINPQFRGEV  203 (203)
T ss_pred             ecccccccCCChHHccccCCCcccCchhhhcCCCCCccccccC
Confidence            9999999999999999999999999999999999999999986

This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi.
>PF09284 RhgB_N: Rhamnogalacturonase B, N-terminal; InterPro: IPR015364 This domain is found in prokaryotic enzyme rhamnogalacturonase B, it adopts a structure consisting of a beta supersandwich, with eighteen strands in two beta-sheets Back     alignment and domain information
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A Back     alignment and domain information
>PF14686 fn3_3: Polysaccharide lyase family 4, domain II; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A Back     alignment and domain information
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A Back     alignment and domain information
>PF13715 DUF4480: Domain of unknown function (DUF4480) Back     alignment and domain information
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3 Back     alignment and domain information
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3 Back     alignment and domain information
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3 Back     alignment and domain information
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3 Back     alignment and domain information
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3 Back     alignment and domain information
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs) Back     alignment and domain information
>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs) Back     alignment and domain information
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs) Back     alignment and domain information
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein Back     alignment and domain information
>PRK15036 hydroxyisourate hydrolase; Provisional Back     alignment and domain information
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins Back     alignment and domain information
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates Back     alignment and domain information
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity Back     alignment and domain information
>cd03869 M14_CPX_like Peptidase M14-like domain of carboxypeptidase (CP)-like protein X (CPX), CPX forms a distinct subgroup of the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs) Back     alignment and domain information
>PF09430 DUF2012: Protein of unknown function (DUF2012); InterPro: IPR019008 This domain is found in different proteins, including uncharacterised protein family UPF0480 and nodal modulators Back     alignment and domain information
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains Back     alignment and domain information
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit Back     alignment and domain information
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate Back     alignment and domain information
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length Back     alignment and domain information
>COG3485 PcaH Protocatechuate 3,4-dioxygenase beta subunit [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase Back     alignment and domain information
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit Back     alignment and domain information
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit Back     alignment and domain information
>PF00775 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases Back     alignment and domain information
>PF03170 BcsB: Bacterial cellulose synthase subunit; InterPro: IPR018513 An operon encoding 4 proteins required for bacterial cellulose biosynthesis (bcs) in Acetobacter xylinus (Gluconacetobacter xylinus) has been isolated via genetic complementation with strains lacking cellulose synthase activity [] Back     alignment and domain information
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators Back     alignment and domain information
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit Back     alignment and domain information
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols Back     alignment and domain information
>cd03462 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type II enzymes) are homodimeric intradiol dioxygenases that degrade chlorocatechols via the addition of molecular oxygen and the subsequent cleavage between two adjacent hydroxyl groups Back     alignment and domain information
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00606 CBD_IV Cellulose Binding Domain Type IV Back     alignment and domain information
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate Back     alignment and domain information
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial Back     alignment and domain information
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed Back     alignment and domain information
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial Back     alignment and domain information
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query649
1nkg_A508 Rhamnogalacturonase B; polysaccharide lyase, carbo 1e-125
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
>1nkg_A Rhamnogalacturonase B; polysaccharide lyase, carbohydrate active enzyme, pectin, LY; 1.50A {Aspergillus aculeatus} SCOP: b.3.1.2 b.18.1.25 b.30.5.10 PDB: 2xhn_A* 3njv_A* 3njx_A Length = 508 Back     alignment and structure
 Score =  378 bits (973), Expect = e-125
 Identities = 92/628 (14%), Positives = 176/628 (28%), Gaps = 137/628 (21%)

Query: 11  QDRHVVLDNGI---LEVTFSYPGGIVTGIRYNDIDNLLEVLNDELNRGYWDLVWNAPGST 67
                V+D      L+ T S     +T I +   +         +  G            
Sbjct: 7   SSSAYVIDTNAPNQLKFTVSRSSCDITSIIHYGTELQYSSQGSHIGSGL----------- 55

Query: 68  GTRGIFDVIQGTSFNVIVENEDQVEISFTRTWDSSLEGKLVPLNIDKRFVMLRGSSGFYT 127
                     G++     ++ D ++++                 + +  V+  G    + 
Sbjct: 56  ----------GSATVTATQSGDYIKVTCVTD------------TLTQYMVVHNGDPIIHM 93

Query: 128 YSIYEHLEEWPGFNLGETRIAFKLRKDKFHYMAIADNRQRYMPLPDDRVPPRGQPLAYPE 187
            +           ++GE R   +L  D         N + +  +            A   
Sbjct: 94  ATYITAE-----PSIGELRFIARLNSDLL------PNEEPFGDVSTT---------ADGT 133

Query: 188 AVLLVNPVEPDFKGEVDDKYQYSCDNKDINVHGWICTDPPVGFWHITPSAEFRTGGPQKQ 247
           A+   +        E   K+  S    D   H             I    E  +GGP  +
Sbjct: 134 AIEGSDVFLVG--SETRSKFYSSERFIDDQRHCI--AGDAHRVCMILNQYESSSGGPFHR 189

Query: 248 NLTSHVGPTTLSVFVSAHYSGEDLVPKFNAGEAWKKVFGPVFVYCNSAFDGDDPLSLWDD 307
           ++ S+ G +  +++   +                  + GP  +Y +       P +  D 
Sbjct: 190 DINSNNGGSYNALYWYMNSGHVQ------TESYRMGLHGPYSMYFS---RSGTPSTSIDT 240

Query: 308 AKMQMSVETESWPYSFPASDDFPKSDQRGNVSGRLLVQDEYISDDYISASGAYVGLAPPG 367
           +            ++      +  +  RG V+G                       A   
Sbjct: 241 SF-----------FADLDIKGYVAASGRGKVAGT-------------------ASGADSS 270

Query: 368 DAGSWQRECKDYQFWTSADEDGYFSITAVRAGDYNLYAWVPGFIGDYRYDVVVNITPGFD 427
                       Q+WT     G F+  A++ G Y +  +   +         V ++ G  
Sbjct: 271 MDWVVHWYNDAAQYWTYTSSSGSFTSPAMKPGTYTMVYYQGEYAV---ATSSVTVSAGST 327

Query: 428 IDMGDLVYEPPRNGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYLDQPDRFRQYGLWERY 487
                 +    + G T+++IG  D     F                   + R +    R 
Sbjct: 328 TTKN--ISGSVKTGTTIFKIGEWDGQPTGFRNAAN--------------QLRMHPSDSR- 370

Query: 488 AELYPDGDLVYTVGSSDYTKDWFFVQVTRKKDNNTYQGSTWQIKFELDDVNQSSTYKLRV 547
             +   G L YTVGSS    D+                +   IKF      Q+    LR+
Sbjct: 371 --MSSWGPLTYTVGSSAL-TDFPMAVFKSV-------NNPVTIKFTATSA-QTGAATLRI 419

Query: 548 AIASA-NLSELQVRINDPSTNRPLFSSGLIGRDNSIARHGIHGLYWLFNVDVPGARLVSG 606
               +      Q  IN  + + P   + L      + R    GL  +++V +P   +V+G
Sbjct: 420 GTTLSFAGGRPQATINSYTGSAPAAPTNLD--SRGVTRGAYRGLGEVYDVSIPSGTIVAG 477

Query: 607 DNTIFFIQPRSTSPF----QGIMYDYIR 630
            NTI       +S         ++D + 
Sbjct: 478 TNTITINVISGSSGDTYLSPNFIFDCVE 505
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query649
1nkg_A508 Rhamnogalacturonase B; polysaccharide lyase, carbo 100.0
2nsm_A439 Carboxypeptidase N catalytic chain; caroxypeptidas 97.86
1h8l_A380 Carboxypeptidase GP180 residues 503-882; hydrolase 97.74
3mn8_A435 LP15968P; catalytic domain of alpha/beta-hydrolase 97.67
1uwy_A426 Carboxypeptidase M; metallopeptidase, GPI-anchor, 97.64
1xpn_A170 Hypothetical protein PA1324; B-barrel, structural 96.37
3qec_A150 Putative carbohydrate binding protein; suramin bin 96.17
4aw7_A591 GH86A beta-porphyranase; hydrolase, porphyran-hexa 96.09
2w87_A139 Esterase D, XYL-CBM35; plant cell WALL degradation 96.0
2wz8_A156 Cellulosome protein dockerin type I; sugar binding 95.66
2w3j_A145 Carbohydrate binding module; sugar-binding protein 95.38
2w47_A144 Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1. 95.06
2bgo_A140 Endo-B1,4-mannanase 5C; carbohydrate binding prote 93.67
2vzp_A127 Aocbm35, EXO-beta-D-glucosaminidase; family 35, CS 92.86
3kcp_A321 Cellulosomal-scaffolding protein A; dockerin, X-mo 92.8
2xsu_A312 Catechol 1,2 dioxygenase; oxidoreductase; HET: PIE 89.18
2bum_B241 Protocatechuate 3,4-dioxygenase beta chain; oxidor 88.65
1uxz_A131 Cellulase B; carbohydrate binding module, CBM6, mi 87.98
2azq_A311 Catechol 1,2-dioxygenase; CTD, lipid, isozyme, int 87.79
2bum_A209 Protocatechuate 3,4-dioxygenase alpha chain; oxido 87.12
1tmx_A293 Hydroxyquinol 1,2-dioxygenase; beta barrel, oxidor 86.78
2boy_A254 3-chlorocatechol 1,2-dioxygenase; beta barrel, oxi 86.49
3th1_A260 Chlorocatechol 1,2-dioxygenase; catechol 1,2-dioxy 85.74
3t63_M238 3,4-PCD, protocatechuate 3,4-dioxygenase beta chai 84.57
1dmh_A311 1,2-CTD, catechol 1,2-dioxygenase; aromatic hydroc 84.0
2y8k_A491 Arabinoxylanase, carbohydrate binding family 6; hy 83.93
2cdp_A160 Beta-agarase 1; carbohydrate-binding module, hydro 83.88
3o5u_A257 Chlorocatechol 1,2-dioxygenase; beta barrel,oxidor 83.42
3n9t_A290 PNPC; phospholipid binds, N-terminal helix tunnel, 82.35
3t63_A200 3,4-PCD, protocatechuate 3,4-dioxygenase alpha cha 81.48
3hhy_A280 1,2-CTD, catechol 1,2-dioxygenase; beta-sandwich, 80.96
1ti6_B274 Pyrogallol hydroxytransferase small subunit; molyb 80.2
>1nkg_A Rhamnogalacturonase B; polysaccharide lyase, carbohydrate active enzyme, pectin, LY; 1.50A {Aspergillus aculeatus} SCOP: b.3.1.2 b.18.1.25 b.30.5.10 PDB: 2xhn_A* 3njv_A* 3njx_A Back     alignment and structure
Probab=100.00  E-value=2.8e-129  Score=1076.88  Aligned_cols=494  Identities=20%  Similarity=0.262  Sum_probs=433.5

Q ss_pred             ceEEEEeCcEEEEECC---eEEEEEeCCCeeEEEEEECCccchhhccccCCCcceeEEEecCCCCCCccceeeeeecceE
Q 042458            5 AVNLLIQDRHVVLDNG---ILEVTFSYPGGIVTGIRYNDIDNLLEVLNDELNRGYWDLVWNAPGSTGTRGIFDVIQGTSF   81 (649)
Q Consensus         5 ~v~l~~~g~~~vidNg---~l~~tv~k~~G~itsi~y~G~enll~~~~~~~~~gY~d~~~~~~G~~~~~~~~~~~~gt~~   81 (649)
                      +++++++|++||||||   +|+|+|+|++|+||||+|+|+|+|+  .++++|+|        +|.          ....+
T Consensus         1 ~~g~t~~~~~~vvd~g~n~~l~~tv~k~~G~itsi~y~G~e~~~--~~~~s~~g--------sg~----------G~~~~   60 (508)
T 1nkg_A            1 AFGITTSSSAYVIDTNAPNQLKFTVSRSSCDITSIIHYGTELQY--SSQGSHIG--------SGL----------GSATV   60 (508)
T ss_dssp             CCEEEECSSEEEEECCCTTCEEEEEETTTCCEEEEEETTEECBC--SSSCBEET--------TCC----------SSCEE
T ss_pred             CccEEecCCEEEEECCCCCEEEEEEeCCCceEEEEEECCEEccc--cCCCcccc--------cCC----------CcceE
Confidence            4789999999999655   8999999999999999999997444  68999999        442          11234


Q ss_pred             EEEEecCCEEEEEEEEeecCCCCCCcccceeeEEEEEecCCceEEEEEEeeccccCCCCCCcceEEEEecCCCCccccee
Q 042458           82 NVIVENEDQVEISFTRTWDSSLEGKLVPLNIDKRFVMLRGSSGFYTYSIYEHLEEWPGFNLGETRIAFKLRKDKFHYMAI  161 (649)
Q Consensus        82 ~v~~~~~~~i~Vs~~~~~~~s~~g~~~~l~l~~~~v~r~G~sgiY~y~~~~~~~~~p~~~lge~R~v~Rl~~~~f~~~~~  161 (649)
                      +++. ++++|+|||++       +     +||||||||+|++|||||+++++     +++|+|+|+|||||+++|++   
T Consensus        61 ~~~~-~~~~i~vs~~~-------~-----~l~~~~v~~~g~sg~Y~y~~~~~-----~~~lge~R~v~Rl~~~~f~~---  119 (508)
T 1nkg_A           61 TATQ-SGDYIKVTCVT-------D-----TLTQYMVVHNGDPIIHMATYITA-----EPSIGELRFIARLNSDLLPN---  119 (508)
T ss_dssp             EEEE-ETTEEEEEEEC-------S-----SEEEEEEEETTCCEEEEEEEESS-----CCTTSCEEEEEEECTTTCCE---
T ss_pred             EEEe-cCCEEEEEEEe-------C-----CceEEEEEeCCCceEEEEEeecc-----CCCCCceEEEEEcChhhCCC---
Confidence            4333 57999999997       3     89999999999999999999975     77999999999999999975   


Q ss_pred             eccccccCCCCCCCCCCCCCcccccceEEeecCCCCCCCceEeeeeeccccccccceEEEEeCCCCeEEEEEcCCCCccc
Q 042458          162 ADNRQRYMPLPDDRVPPRGQPLAYPEAVLLVNPVEPDFKGEVDDKYQYSCDNKDINVHGWICTDPPVGFWHITPSAEFRT  241 (649)
Q Consensus       162 ~d~r~~~~P~~~d~~~~~g~~l~~~eav~l~~~~~~~~~G~~~sKY~~s~~~~D~~vhG~~s~g~~vG~W~I~~s~E~~s  241 (649)
                         ++++||+|+++   .++++ +.|++..       ++|+++||||||+++||++||||+  +++||||||+|++||++
T Consensus       120 ---~~r~~~~p~~~---~~~~v-~~~d~~~-------l~G~~~~KY~~s~~~~D~~vhG~~--~~~vG~w~I~~s~E~~s  183 (508)
T 1nkg_A          120 ---EEPFGDVSTTA---DGTAI-EGSDVFL-------VGSETRSKFYSSERFIDDQRHCIA--GDAHRVCMILNQYESSS  183 (508)
T ss_dssp             ---EETTGGGGCCT---TCEEE-ETTTEEE-------ETTEEEEGGGGCCBGGGCSEEEEE--CSSCEEEEECCCCTTCS
T ss_pred             ---ccccCCCCccc---cCcEe-eecccee-------eCCEEccceeccccceecceEEEE--CCCeEEEEEcCCccccc
Confidence               26899999875   56553 4443322       389999999999999999999999  59999999999999999


Q ss_pred             CCcceecccccCCC---cEEEEEeeccccCCCccccccCCCCcceeeeeEEEEEcCCCCCCCCcccHHHHHHhhhhhccC
Q 042458          242 GGPQKQNLTSHVGP---TTLSVFVSAHYSGEDLVPKFNAGEAWKKVFGPVFVYCNSAFDGDDPLSLWDDAKMQMSVETES  318 (649)
Q Consensus       242 GGP~kqdL~~h~g~---~~l~y~~s~H~~g~~~~~~~~~Ge~w~kv~GP~~~y~N~g~~~~~~~~l~~DA~~~~~~E~~~  318 (649)
                      ||||||||++|++|   ++||||+|+|+++++++    .     |||||||||||+|++++                 ++
T Consensus       184 GGP~kqdL~~h~~~~~~~~~~y~~s~H~~t~~~~----~-----g~~GP~~~y~n~g~~~~-----------------~~  237 (508)
T 1nkg_A          184 GGPFHRDINSNNGGSYNALYWYMNSGHVQTESYR----M-----GLHGPYSMYFSRSGTPS-----------------TS  237 (508)
T ss_dssp             SCTTCBCCCEEECSSCEEEEEEEECSTTCCSCCC----C-----EEEEEEEEEEESSCCCC-----------------SC
T ss_pred             CCCcchhhhccCCcccceeeeeEeeccccccccc----c-----cccccEEEEECCCCCCC-----------------CC
Confidence            99999999999999   89999999998887644    4     69999999999998863                 58


Q ss_pred             CCCCCCCC---CCCCCCCCCeEEEEEEEeeccccccccccCCccEEEecCCCCCCCcccccccceeEEEeCCCcceEeCc
Q 042458          319 WPYSFPAS---DDFPKSDQRGNVSGRLLVQDEYISDDYISASGAYVGLAPPGDAGSWQRECKDYQFWTSADEDGYFSITA  395 (649)
Q Consensus       319 wpysf~~s---~~y~~~s~RGtVsG~v~~~d~~~~~~~~pa~~a~V~L~~~~~~g~wq~~~~~yqYwt~td~~G~FtI~n  395 (649)
                      |||+|++|   ++|||+++||+|+|+|+   +      .|+....|++        |  ++|+|||||+||++|+|+|++
T Consensus       238 wpysf~~s~~~~~y~~~~~RGtVsG~V~---G------~~~~~~avv~--------~--~~k~~qywt~td~~G~FtI~~  298 (508)
T 1nkg_A          238 IDTSFFADLDIKGYVAASGRGKVAGTAS---G------ADSSMDWVVH--------W--YNDAAQYWTYTSSSGSFTSPA  298 (508)
T ss_dssp             CCCGGGGGTTCTTCCCGGGCBEEEEEEE---S------SCTTSCEEEE--------E--ECSSCEEEEECCTTCEEECCC
T ss_pred             CCCccccccCccCCcCcccccEEEEEEc---C------ccCCceEEEE--------E--cCCCceeEEEECCCCcEEeCC
Confidence            99999999   99999999999999987   3      4444444444        2  578999999999999999999


Q ss_pred             ccCCceEEEEEECceeeeeeeeeEEEEcCCceeeccceEEeCCCCCCceeEEeccCCCccceecCCCCccccccccccCC
Q 042458          396 VRAGDYNLYAWVPGFIGDYRYDVVVNITPGFDIDMGDLVYEPPRNGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYLDQP  475 (649)
Q Consensus       396 VrpGtY~L~a~~~G~~G~~~~~~~VtV~aG~t~~l~~l~~~~~~~g~~LWeIGi~Drta~eF~~~d~~~~~~n~~~~~hp  475 (649)
                      ||||+|+|+||++|+   ...+..|+|+||++++++ |+|+++ ++++|||||+|||+|+||++||+.       ..|||
T Consensus       299 V~pGtY~L~a~~~G~---~~~~~~VtV~aG~t~~l~-i~~~~~-~g~~iW~IG~pDrta~eF~~~d~~-------~~~hp  366 (508)
T 1nkg_A          299 MKPGTYTMVYYQGEY---AVATSSVTVSAGSTTTKN-ISGSVK-TGTTIFKIGEWDGQPTGFRNAANQ-------LRMHP  366 (508)
T ss_dssp             BCSEEEEEEEEETTE---EEEEEEEEECTTCEEECC-EECCCC-CCSEEEEEECSSSSCTTSBTHHHH-------TTSCT
T ss_pred             cCCceEEEEEEECce---EEEEeEEEEcCCCeeEee-eEEecC-CCCeeEEeeCCCCCchhhcCCCcc-------cccCc
Confidence            999999999999987   356778999999999997 999876 799999999999999999999832       23599


Q ss_pred             chhhcchhhhhhcccCCCCCeEEEecccCCCCCeeeEEEeeeCCCCCCCCceEEEEEEecCCCCCccEEEEEEeecc-CC
Q 042458          476 DRFRQYGLWERYAELYPDGDLVYTVGSSDYTKDWFFVQVTRKKDNNTYQGSTWQIKFELDDVNQSSTYKLRVAIASA-NL  554 (649)
Q Consensus       476 ~~~R~yglW~~y~~~~P~~dl~ytVG~S~~~~Dw~ya~~~~~~~~~~~~~~~w~I~F~L~~~~~~~~~tLriala~a-~~  554 (649)
                      +|+||| +|+         ||+||||+|++ +|||||||+.       .+++|+|+|+|+++| .+++||||+||+| ++
T Consensus       367 ~~~r~~-~W~---------~l~ytVG~S~~-~Dw~ya~~~~-------~~~~w~I~F~l~~~~-~~~~tLri~la~a~a~  427 (508)
T 1nkg_A          367 SDSRMS-SWG---------PLTYTVGSSAL-TDFPMAVFKS-------VNNPVTIKFTATSAQ-TGAATLRIGTTLSFAG  427 (508)
T ss_dssp             TCTTSC-CCC---------SCEEETTTSCG-GGSBSEEETT-------TTCCEEEEEEECGGG-CSCEEEEEEEEEEETT
T ss_pred             chhccc-ccC---------CeEEEeCcCch-hcCCeEEECC-------CCCcEEEEEEcCccc-CCceEEEEEehhhccC
Confidence            999998 895         49999999999 7999999964       469999999999988 6799999999998 68


Q ss_pred             ceeEEEEcCCCCCCCCccccccCCCCeeeeeeEEeeeEEEEEEeeCCceeeeccEEEEEeecCCC--CCc--eEEEEEEE
Q 042458          555 SELQVRINDPSTNRPLFSSGLIGRDNSIARHGIHGLYWLFNVDVPGARLVSGDNTIFFIQPRSTS--PFQ--GIMYDYIR  630 (649)
Q Consensus       555 ~~~~V~vN~~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G~NtI~l~~~~gss--~f~--~vmyD~Ir  630 (649)
                      +++||+|||+...  ++.++.+++||||+||++||+|++++|+||+++|++|+|+|+|+|+++++  +|+  +|||||||
T Consensus       428 ~~~qV~VN~~~~~--~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G~NtI~lt~~~~s~~~~fls~~vmyD~I~  505 (508)
T 1nkg_A          428 GRPQATINSYTGS--APAAPTNLDSRGVTRGAYRGLGEVYDVSIPSGTIVAGTNTITINVISGSSGDTYLSPNFIFDCVE  505 (508)
T ss_dssp             CEEEEEETTEECC--CCCCCCCCCSCCGGGTCCCSCCCEEEEEECTTSSCSEEEEEEEEEECSCCCSGGGSSEEEEEEEE
T ss_pred             CCeEEEECCcCCc--CccccccCCCCeEEecceeeeeEEEEEEEcHHHeecCceEEEEEeccCCCCCccccccEEEEEEE
Confidence            9999999997654  55788999999999999999999999999999999999999999999986  588  99999999


Q ss_pred             Eec
Q 042458          631 FEG  633 (649)
Q Consensus       631 Le~  633 (649)
                      ||.
T Consensus       506 L~~  508 (508)
T 1nkg_A          506 LFQ  508 (508)
T ss_dssp             EEC
T ss_pred             ecC
Confidence            984
>2nsm_A Carboxypeptidase N catalytic chain; caroxypeptidase, zinc peptidase, transthyretin-like domain, processing, peptide modification, hydrolase; HET: NAG; 2.10A {Homo sapiens} Back     alignment and structure
>1h8l_A Carboxypeptidase GP180 residues 503-882; hydrolase, zinc-dependent protease; HET: NAG BMA NDG GEM; 2.6A {Lophonetta specularioides} SCOP: b.3.2.1 c.56.5.1 PDB: 1qmu_A* Back     alignment and structure
>3mn8_A LP15968P; catalytic domain of alpha/beta-hydrolase fold, C-terminal, A transthyretin-like domain, hydrolase; HET: NAG GEM; 2.70A {Drosophila melanogaster} Back     alignment and structure
>1uwy_A Carboxypeptidase M; metallopeptidase, GPI-anchor, metalloprotease, zinc, lipoprotein, hydrolase, structural proteomics in europe, spine; HET: NAG; 3.0A {Homo sapiens} SCOP: b.3.2.1 c.56.5.1 Back     alignment and structure
>1xpn_A Hypothetical protein PA1324; B-barrel, structural genomics, northeast structural genomics consortium, NESG, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: b.3.7.1 Back     alignment and structure
>3qec_A Putative carbohydrate binding protein; suramin binding, heparin binding, possible carbohydrate TRAN biofilm formation; HET: PGE; 2.61A {Pseudomonas aeruginosa} Back     alignment and structure
>4aw7_A GH86A beta-porphyranase; hydrolase, porphyran-hexa-oligosaccharide, complex; HET: GLA GAL L6S AAL; 1.33A {Bacteroides plebeius} Back     alignment and structure
>2w87_A Esterase D, XYL-CBM35; plant cell WALL degradation, carbohydrate protein binding, xylan, CMB35, glucuronic acid, hydrolase; HET: GCU; 1.60A {Cellvibrio japonicus} PDB: 2w46_A Back     alignment and structure
>2wz8_A Cellulosome protein dockerin type I; sugar binding protein; 1.50A {Clostridium thermocellum} Back     alignment and structure
>2w3j_A Carbohydrate binding module; sugar-binding protein, family 35, uronic acid sugars; 1.70A {Uncultured bacterium} Back     alignment and structure
>2w47_A Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1.40A {Clostridium thermocellum} PDB: 2w1w_A Back     alignment and structure
>2vzp_A Aocbm35, EXO-beta-D-glucosaminidase; family 35, CSXA, glucuronic acid, hydrolase; 1.05A {Amycolatopsis orientalis} PDB: 2vzq_A* 2vzr_A* Back     alignment and structure
>3kcp_A Cellulosomal-scaffolding protein A; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} PDB: 3p0d_C 4fl4_C 2b59_B Back     alignment and structure
>2xsu_A Catechol 1,2 dioxygenase; oxidoreductase; HET: PIE; 1.60A {Acinetobacter radioresistens} PDB: 2xsr_A* 2xsv_A* Back     alignment and structure
>2bum_B Protocatechuate 3,4-dioxygenase beta chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_B 1eoa_B 1eob_B* 1eoc_B* 1eo9_B 2buq_B 2bur_B* 2bux_B 2buy_B 2buz_B* 2bv0_B* 2buu_B* 2but_B* 2buv_B* 2buw_B* Back     alignment and structure
>1uxz_A Cellulase B; carbohydrate binding module, CBM6, mixted BETA1, 3-1, 4 linked glucan; 1.4A {Cellvibrio mixtus} SCOP: b.18.1.10 PDB: 1uy0_A* 1uyx_A* 1uyy_A* 1uyz_A* 1uz0_A* Back     alignment and structure
>2azq_A Catechol 1,2-dioxygenase; CTD, lipid, isozyme, intradiol, oxido; HET: PCF; 2.65A {Pseudomonas putida} Back     alignment and structure
>2bum_A Protocatechuate 3,4-dioxygenase alpha chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_A 1eob_A* 1eoc_A* 1eoa_A 2buq_A 2bur_A* 2but_A 2buu_A* 2buv_A* 2buw_A* 1eo9_A 2bux_A 2buy_A 2buz_A* 2bv0_A* Back     alignment and structure
>1tmx_A Hydroxyquinol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: HGX; 1.75A {Pimelobacter simplex} Back     alignment and structure
>2boy_A 3-chlorocatechol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: BHO LPP; 1.9A {Rhodococcus opacus} Back     alignment and structure
>3th1_A Chlorocatechol 1,2-dioxygenase; catechol 1,2-dioxygenase family, oxidoreductase, iron bindin; HET: 3PH GOL; 3.40A {Pseudomonas putida} Back     alignment and structure
>3t63_M 3,4-PCD, protocatechuate 3,4-dioxygenase beta chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 3mi1_M* 3mv4_M* 3mi5_M* 3mfl_M* 3mv6_M* 3t67_M 3pca_M* 3pcb_M* 2pcd_M* 3pce_M* 3pcf_M* 3pcc_M* 3pch_M* 3pci_M* 3pcj_M* 3pck_M* 3pcl_M* 3pcm_M* 3pcn_M* 3pcg_M ... Back     alignment and structure
>1dmh_A 1,2-CTD, catechol 1,2-dioxygenase; aromatic hydrocarbon degradation, alpha/beta FO metalloenzyme, substrate, oxidoreductase; HET: LIO; 1.70A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1dlq_A* 1dlm_A* 1dlt_A* Back     alignment and structure
>2y8k_A Arabinoxylanase, carbohydrate binding family 6; hydrolase; 1.47A {Clostridium thermocellum} Back     alignment and structure
>2cdp_A Beta-agarase 1; carbohydrate-binding module, hydrolase; HET: GAL AAL; 1.59A {Saccharophagus degradans} PDB: 2cdo_A* Back     alignment and structure
>3o5u_A Chlorocatechol 1,2-dioxygenase; beta barrel,oxidoreductase, oxidoreductase; HET: MYY DHB; 2.35A {Rhodococcus opacus} PDB: 3o32_A* 1s9a_A* 3o6j_A* 3o6r_A* Back     alignment and structure
>3n9t_A PNPC; phospholipid binds, N-terminal helix tunnel, oxidoreductase; HET: HGX FLC; 2.00A {Pseudomonas putida} Back     alignment and structure
>3t63_A 3,4-PCD, protocatechuate 3,4-dioxygenase alpha chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 1ykl_A* 1ykm_A* 1ykn_A* 1yko_A* 1ykp_A* 2pcd_A 1ykk_A* 3lmx_A* 3lxv_A* 3mfl_A* 3mi1_A* 3mi5_A* 3lkt_A* 3mv6_A* 3pca_A* 3pcb_A* 3pcc_A* 3pcd_A 3pce_A* 3pcf_A* ... Back     alignment and structure
>3hhy_A 1,2-CTD, catechol 1,2-dioxygenase; beta-sandwich, aromatic hydrocarbons catabolism, dioxygenase metal-binding, oxidoreductase; HET: 6PL; 1.55A {Rhodococcus opacus} PDB: 3hhx_A* 3hgi_A* 3hj8_A* 3hjq_A* 3hjs_A* 3i4v_A* 3hkp_A* 3i51_A* 3i4y_A* Back     alignment and structure
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 649
d1nkga2171 b.18.1.25 (A:338-508) Rhamnogalacturonase B, RhgB, 1e-55
d1nkga187 b.3.1.2 (A:251-337) Rhamnogalacturonase B, RhgB, m 0.002
>d1nkga2 b.18.1.25 (A:338-508) Rhamnogalacturonase B, RhgB, C-terminal domain {Aspergillus aculeatus [TaxId: 5053]} Length = 171 Back     information, alignment and structure

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Rhamnogalacturonase B, RhgB, C-terminal domain
domain: Rhamnogalacturonase B, RhgB, C-terminal domain
species: Aspergillus aculeatus [TaxId: 5053]

 Score =  184 bits (470), Expect = 1e-55
 Identities = 39/195 (20%), Positives = 61/195 (31%), Gaps = 33/195 (16%)

Query: 441 GPTLWEIGIPDRSAAEFYVPDPNPKYINKLYLDQPDRFRQYGLWERYAELYPDGDLVYTV 500
           G T+++IG  D     F                 P   R              G L YTV
Sbjct: 2   GTTIFKIGEWDGQPTGFRNAA-------NQLRMHPSDSRMSSW----------GPLTYTV 44

Query: 501 GSSDYTKDWFFVQVTRKKDNNTYQGSTWQIKFELDDVNQSSTYKLRVAIASANLS-ELQV 559
           GSS    D+                +   IKF      Q+    LR+    +      Q 
Sbjct: 45  GSSAL-TDFPMAVFKS-------VNNPVTIKFTATSA-QTGAATLRIGTTLSFAGGRPQA 95

Query: 560 RINDPSTNRPLFSSGLIGRDNSIARHGIHGLYWLFNVDVPGARLVSGDNTIFFIQPRSTS 619
            IN  + + P   +        + R    GL  +++V +P   +V+G NTI       +S
Sbjct: 96  TINSYTGSAPAAPT--NLDSRGVTRGAYRGLGEVYDVSIPSGTIVAGTNTITINVISGSS 153

Query: 620 PFQ----GIMYDYIR 630
                    ++D + 
Sbjct: 154 GDTYLSPNFIFDCVE 168
>d1nkga1 b.3.1.2 (A:251-337) Rhamnogalacturonase B, RhgB, middle domain {Aspergillus aculeatus [TaxId: 5053]} Length = 87 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query649
d1nkga3250 Rhamnogalacturonase B, RhgB, N-terminal domain {As 100.0
d1nkga2171 Rhamnogalacturonase B, RhgB, C-terminal domain {As 100.0
d1nkga187 Rhamnogalacturonase B, RhgB, middle domain {Asperg 99.48
d1h8la179 Carboxypeptidase D C-terminal domain {Crested duck 98.5
d1vlfn179 Transhydroxylase beta subunit, BthL, C-terminal do 98.24
d1uwya1107 Carboxypeptidase M C-terminal domain {Human (Homo 97.78
d1w9sa_134 Hypothetical protein BH0236 {Bacillus halodurans [ 94.27
d3pcca_200 Protocatechuate-3,4-dioxygenase, alpha chain {Pseu 92.83
d2burb1238 Protocatechuate-3,4-dioxygenase, beta chain {Acine 92.64
d2b59b296 Cellulosomal scaffolding protein A {Clostridium th 92.16
d3pccm_236 Protocatechuate-3,4-dioxygenase, beta chain {Pseud 91.86
d2bura1202 Protocatechuate-3,4-dioxygenase, alpha chain {Acin 91.46
d1dmha_309 Catechol 1,2-dioxygenase {Acinetobacter calcoaceti 91.23
d1xpna_170 Hypothetical protein PA1324 {Pseudomonas aeruginos 91.1
d1s9aa_256 Chlorocatechol 1,2-dioxygenase {Rhodococcus opacus 90.57
d1od3a_132 Putative xylanase {Clostridium stercorarium [TaxId 87.26
d1uxxx_125 Carbohydrate binding module from xylanase U {Clost 87.1
d1uxza_131 Cellulase B (lichenase 5a) {Cellvibrio mixtus [Tax 85.31
d1uy4a_132 Putative xylanase {Clostridium stercorarium [TaxId 84.52
d1jz8a4293 beta-Galactosidase, domain 5 {Escherichia coli [Ta 82.97
>d1nkga3 b.30.5.10 (A:1-250) Rhamnogalacturonase B, RhgB, N-terminal domain {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
class: All beta proteins
fold: Supersandwich
superfamily: Galactose mutarotase-like
family: Rhamnogalacturonase B, RhgB, N-terminal domain
domain: Rhamnogalacturonase B, RhgB, N-terminal domain
species: Aspergillus aculeatus [TaxId: 5053]

Probab=100.00  E-value=2.4e-51  Score=401.17  Aligned_cols=239  Identities=19%  Similarity=0.204  Sum_probs=203.1

Q ss_pred             ceEEEEeCcEEEEECCe---EEEEEeCCCeeEEEEEECCccchhhccccCCCcceeEEEecCCCCCCccceeeeeecceE
Q 042458            5 AVNLLIQDRHVVLDNGI---LEVTFSYPGGIVTGIRYNDIDNLLEVLNDELNRGYWDLVWNAPGSTGTRGIFDVIQGTSF   81 (649)
Q Consensus         5 ~v~l~~~g~~~vidNg~---l~~tv~k~~G~itsi~y~G~enll~~~~~~~~~gY~d~~~~~~G~~~~~~~~~~~~gt~~   81 (649)
                      +++++++|+++|||.|.   |+|+|++++|||+||+|+|+| || +.+|.+|++        ||.           |+..
T Consensus         1 aFG~T~sg~~yvVDtga~~~LvF~V~~s~gDitSi~Y~g~E-~Q-~~~k~ShI~--------SGL-----------Gsat   59 (250)
T d1nkga3           1 AFGITTSSSAYVIDTNAPNQLKFTVSRSSCDITSIIHYGTE-LQ-YSSQGSHIG--------SGL-----------GSAT   59 (250)
T ss_dssp             CCEEEECSSEEEEECCCTTCEEEEEETTTCCEEEEEETTEE-CB-CSSSCBEET--------TCC-----------SSCE
T ss_pred             CcceEecCCcEEEeCCCCcceEEEEecCCCceEEEEECCEE-ee-ccCccceec--------cCc-----------ccee
Confidence            47899999999999654   999999999999999999996 88 778999999        873           5555


Q ss_pred             EEEEecCCEEEEEEEEeecCCCCCCcccceeeEEEEEecCCceEEEEEEeeccccCCCCCCcceEEEEecCCCCccccee
Q 042458           82 NVIVENEDQVEISFTRTWDSSLEGKLVPLNIDKRFVMLRGSSGFYTYSIYEHLEEWPGFNLGETRIAFKLRKDKFHYMAI  161 (649)
Q Consensus        82 ~v~~~~~~~i~Vs~~~~~~~s~~g~~~~l~l~~~~v~r~G~sgiY~y~~~~~~~~~p~~~lge~R~v~Rl~~~~f~~~~~  161 (649)
                      ..+.+..++|+|+|+.       |     +|.||||+|+|++.|||+++.+.     +++|||||||+||+.++||+.. 
T Consensus        60 Vs~~~~~~yIkVT~~~-------~-----tLthYyv~r~G~~~IymaT~~~a-----epsvGelRfIaRL~~~~lPn~~-  121 (250)
T d1nkga3          60 VTATQSGDYIKVTCVT-------D-----TLTQYMVVHNGDPIIHMATYITA-----EPSIGELRFIARLNSDLLPNEE-  121 (250)
T ss_dssp             EEEEEETTEEEEEEEC-------S-----SEEEEEEEETTCCEEEEEEEESS-----CCTTSCEEEEEEECTTTCCEEE-
T ss_pred             EEeeccCCEEEEEEEe-------c-----CcEEEEEeecCCceEEEEeccCC-----CCCccceeEEEecccccCCCCC-
Confidence            5566777999999997       4     89999999999999999999877     4589999999999999999832 


Q ss_pred             eccccccCCCCCCCCCCCCCcccccceEEeecCCCCCCCceEeeeeeccccccccceEEEEeCCCCeEEEEEcCCCCccc
Q 042458          162 ADNRQRYMPLPDDRVPPRGQPLAYPEAVLLVNPVEPDFKGEVDDKYQYSCDNKDINVHGWICTDPPVGFWHITPSAEFRT  241 (649)
Q Consensus       162 ~d~r~~~~P~~~d~~~~~g~~l~~~eav~l~~~~~~~~~G~~~sKY~~s~~~~D~~vhG~~s~g~~vG~W~I~~s~E~~s  241 (649)
                              |..+.... .+     .+|++..|++-  ++|+++||||++.+++|+++|||+  |+.+++|||++++|.+|
T Consensus       122 --------p~~dvs~t-~~-----~taIEgsDVF~--vdG~TrSKfYSs~R~IDd~~~~vs--g~~v~v~mi~~~~E~SS  183 (250)
T d1nkga3         122 --------PFGDVSTT-AD-----GTAIEGSDVFL--VGSETRSKFYSSERFIDDQRHCIA--GDAHRVCMILNQYESSS  183 (250)
T ss_dssp             --------TTGGGGCC-TT-----CEEEETTTEEE--ETTEEEEGGGGCCBGGGCSEEEEE--CSSCEEEEECCCCTTCS
T ss_pred             --------CCcccccc-CC-----CcEEecccEEe--ECCEEehhhccccceecccEEEEe--cCCeEEEEEeCCccccC
Confidence                    11111110 22     25555555552  499999999999999999999997  89999999999999999


Q ss_pred             CCcceecccccCCCc---EEEEEeeccccCCCccccccCCCCcceeeeeEEEEEcCCCCCCCCcccHHHHHHhhhhhccC
Q 042458          242 GGPQKQNLTSHVGPT---TLSVFVSAHYSGEDLVPKFNAGEAWKKVFGPVFVYCNSAFDGDDPLSLWDDAKMQMSVETES  318 (649)
Q Consensus       242 GGP~kqdL~~h~g~~---~l~y~~s~H~~g~~~~~~~~~Ge~w~kv~GP~~~y~N~g~~~~~~~~l~~DA~~~~~~E~~~  318 (649)
                      ||||+|||++|.++.   ||+||+|+|.|+|+    ||.|     |||||.|+|+++++|++                 +
T Consensus       184 GGPFfRdI~~n~~~~~~~Ly~ymnsgH~QTE~----~R~G-----lhGPY~l~Ft~~g~Ps~-----------------~  237 (250)
T d1nkga3         184 GGPFHRDINSNNGGSYNALYWYMNSGHVQTES----YRMG-----LHGPYSMYFSRSGTPST-----------------S  237 (250)
T ss_dssp             SCTTCBCCCEEECSSCEEEEEEEECSTTCCSC----CCCE-----EEEEEEEEEESSCCCCS-----------------C
T ss_pred             CCCcchhhhhcCCCCccceeEEeecCcccchh----hhcc-----cCCceEEEEcCCCCCCC-----------------c
Confidence            999999999999774   99999999999996    5586     99999999999999863                 3


Q ss_pred             CCCCCCCC
Q 042458          319 WPYSFPAS  326 (649)
Q Consensus       319 wpysf~~s  326 (649)
                      .+.+||++
T Consensus       238 lDtsff~~  245 (250)
T d1nkga3         238 IDTSFFAD  245 (250)
T ss_dssp             CCCGGGGG
T ss_pred             cchhhhhh
Confidence            57889876
>d1nkga2 b.18.1.25 (A:338-508) Rhamnogalacturonase B, RhgB, C-terminal domain {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1nkga1 b.3.1.2 (A:251-337) Rhamnogalacturonase B, RhgB, middle domain {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1h8la1 b.3.2.1 (A:305-383) Carboxypeptidase D C-terminal domain {Crested duck (Lophonetta specularioides) [TaxId: 8836]} Back     information, alignment and structure
>d1vlfn1 b.3.5.1 (N:196-274) Transhydroxylase beta subunit, BthL, C-terminal domain {Pelobacter acidigallici [TaxId: 35816]} Back     information, alignment and structure
>d1uwya1 b.3.2.1 (A:297-403) Carboxypeptidase M C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w9sa_ b.18.1.10 (A:) Hypothetical protein BH0236 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d3pcca_ b.3.6.1 (A:) Protocatechuate-3,4-dioxygenase, alpha chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2burb1 b.3.6.1 (B:303-540) Protocatechuate-3,4-dioxygenase, beta chain {Acinetobacter calcoaceticus, adp1 [TaxId: 471]} Back     information, alignment and structure
>d2b59b2 b.3.2.2 (B:8-103) Cellulosomal scaffolding protein A {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d3pccm_ b.3.6.1 (M:) Protocatechuate-3,4-dioxygenase, beta chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2bura1 b.3.6.1 (A:4-200) Protocatechuate-3,4-dioxygenase, alpha chain {Acinetobacter calcoaceticus, adp1 [TaxId: 471]} Back     information, alignment and structure
>d1dmha_ b.3.6.1 (A:) Catechol 1,2-dioxygenase {Acinetobacter calcoaceticus [TaxId: 471]} Back     information, alignment and structure
>d1xpna_ b.3.7.1 (A:) Hypothetical protein PA1324 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1s9aa_ b.3.6.1 (A:) Chlorocatechol 1,2-dioxygenase {Rhodococcus opacus [TaxId: 37919]} Back     information, alignment and structure
>d1od3a_ b.18.1.10 (A:) Putative xylanase {Clostridium stercorarium [TaxId: 1510]} Back     information, alignment and structure
>d1uxxx_ b.18.1.10 (X:) Carbohydrate binding module from xylanase U {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1uxza_ b.18.1.10 (A:) Cellulase B (lichenase 5a) {Cellvibrio mixtus [TaxId: 39650]} Back     information, alignment and structure
>d1uy4a_ b.18.1.10 (A:) Putative xylanase {Clostridium stercorarium [TaxId: 1510]} Back     information, alignment and structure
>d1jz8a4 b.30.5.1 (A:731-1023) beta-Galactosidase, domain 5 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure